Early bursts of body size and shape evolution are rare in comparative data.

PubMed

Harmon, Luke J; Losos, Jonathan B; Jonathan Davies, T; Gillespie, Rosemary G; Gittleman, John L; Bryan Jennings, W; Kozak, Kenneth H; McPeek, Mark A; Moreno-Roark, Franck; Near, Thomas J; Purvis, Andy; Ricklefs, Robert E; Schluter, Dolph; Schulte Ii, James A; Seehausen, Ole; Sidlauskas, Brian L; Torres-Carvajal, Omar; Weir, Jason T; Mooers, Arne Ø

2010-08-01

George Gaylord Simpson famously postulated that much of life's diversity originated as adaptive radiations-more or less simultaneous divergences of numerous lines from a single ancestral adaptive type. However, identifying adaptive radiations has proven difficult due to a lack of broad-scale comparative datasets. Here, we use phylogenetic comparative data on body size and shape in a diversity of animal clades to test a key model of adaptive radiation, in which initially rapid morphological evolution is followed by relative stasis. We compared the fit of this model to both single selective peak and random walk models. We found little support for the early-burst model of adaptive radiation, whereas both other models, particularly that of selective peaks, were commonly supported. In addition, we found that the net rate of morphological evolution varied inversely with clade age. The youngest clades appear to evolve most rapidly because long-term change typically does not attain the amount of divergence predicted from rates measured over short time scales. Across our entire analysis, the dominant pattern was one of constraints shaping evolution continually through time rather than rapid evolution followed by stasis. We suggest that the classical model of adaptive radiation, where morphological evolution is initially rapid and slows through time, may be rare in comparative data.

Ancestor-descendant relationships in evolution: origin of the extant pygmy right whale, Caperea marginata.

PubMed

Tsai, Cheng-Hsiu; Fordyce, R Ewan

2015-01-01

Ancestor-descendant relationships (ADRs), involving descent with modification, are the fundamental concept in evolution, but are usually difficult to recognize. We examined the cladistic relationship between the only reported fossil pygmy right whale, †Miocaperea pulchra, and its sole living relative, the enigmatic pygmy right whale Caperea marginata, the latter represented by both adult and juvenile specimens. †Miocaperea is phylogenetically bracketed between juvenile and adult Caperea marginata in morphologically based analyses, thus suggesting a possible ADR-the first so far identified within baleen whales (Cetacea: Mysticeti). The †Miocaperea-Caperea lineage may show long-term morphological stasis and, in turn, punctuated equilibrium. © 2015 The Author(s) Published by the Royal Society. All rights reserved.

Long-term morphological developments of river channels separated by a longitudinal training wall

NASA Astrophysics Data System (ADS)

Le, T. B.; Crosato, A.; Uijttewaal, W. S. J.

2018-03-01

Rivers have been trained for centuries by channel narrowing and straightening. This caused important damages to their ecosystems, particularly around the bank areas. We analyze here the possibility to train rivers in a new way by subdividing their channel in main and ecological channel with a longitudinal training wall. The effectiveness of longitudinal training walls in achieving this goal and their long-term effects on the river morphology have not been thoroughly investigated yet. In particular, studies that assess the stability of the two parallel channels separated by the training wall are still lacking. This work studies the long-term morphological developments of river channels subdivided by a longitudinal training wall in the presence of steady alternate bars. This type of bars, common in alluvial rivers, alters the flow field and the sediment transport direction and might affect the stability of the bifurcating system. The work comprises both laboratory experiments and numerical simulations (Delft3D). The results show that a system of parallel channels divided by a longitudinal training wall has the tendency to become unstable. An important factor is found to be the location of the upstream termination of the longitudinal wall with respect to a neighboring steady bar. The relative widths of the two parallel channels separated by the wall and variable discharge do not substantially change the final evolution of the system.

Styles of crater gradation in Southern Ismenius Lacus, Mars

NASA Technical Reports Server (NTRS)

Grant, J. A.; Schultz, P. H.

1991-01-01

Preserved morphology around selected impact craters together with results from study of long term gradational evolution are used to assess processes responsible for crater modification in southern Ismenius Lacus. Results are compared with the gradational styles of selected terrestrial craters. Although most craters in the region display complex primary morphologies, some first order comparisons with the gradational styles around simple terrestrial craters may be valid. Nearly complete high resolution coverage provides a basis for studying morphologic features at scales comparable to those observed in LANDSAT TM images of terrestrial craters. It is concluded that the relative importance of gradational processes differs around the terrestrial and Martian craters considered here: Martian rimless morphologies are produced by mass wasting, eolian deposition/erosion, and limited fluvial incisement resulting in downwasting and significant backwasting of crater walls.

Geomorphic Evolution of Sputnik Planum and Surrounding Terrain

NASA Astrophysics Data System (ADS)

Howard, A. D.; Moore, J. M.; White, O. L.; Umurhan, O. M.; Schenk, P.; Beyer, R. A.; McKinnon, W. B.; Singer, K. N.; Spencer, J. R.; Stern, A.; Weaver, H. A., Jr.; Young, L. A.; Ennico Smith, K.; Olkin, C.

2015-12-01

The informally-named Sputnik Planum is a vast expanse (about 835 km east-west and 1500 km north-south) of N2, CH4, and CO ices which appears craterless at current resolutions, but which gives evidence of both glacial and convective flow in the ices (Stern and the New Horizons Team, Science, 2015). This ice field is surrounded by uplands of varying morphology from hilly terrain to the northeast, plains of apparent ices interspersed with rough terrain to the east, and textured ice surrounding the mountainous terrain to the southwest. The morphology and composition of this bordering terrain will provide clues to the long-term evolution of Sputnik Planum as higher resolution visual and spectral imaging of this region are returned from the New Horizons spacecraft over the next few months. Interactions between Sputnik Planum and surrounding terrain may have involved glacial erosion and deposition. The geomorphic evolution of this region will be discussed in the context of newly-returned encounter data.

A modeling approach to assess coastal management effects on benthic habitat quality: A case study on coastal defense and navigability

NASA Astrophysics Data System (ADS)

Cozzoli, Francesco; Smolders, Sven; Eelkema, Menno; Ysebaert, Tom; Escaravage, Vincent; Temmerman, Stijn; Meire, Patrick; Herman, Peter M. J.; Bouma, Tjeerd J.

2017-01-01

The natural coastal hydrodynamics and morphology worldwide is altered by human interventions such as embankments, shipping and dredging, which may have consequences for ecosystem functionality. To ensure long-term ecological sustainability, requires capability to predict long-term large-scale ecological effects of altered hydromorphology. As empirical data sets at relevant scales are missing, there is need for integrating ecological modeling with physical modeling. This paper presents a case study showing the long-term, large-scale macrozoobenthic community response to two contrasting human alterations of the hydromorphological habitat: deepening of estuarine channels to enhance navigability (Westerschelde) vs. realization of a storm surge barrier to enhance coastal safety (Oosterschelde). A multidisciplinary integration of empirical data and modeling of estuarine morphology, hydrodynamics and benthic ecology was used to reconstruct the hydrological evolution and resulting long-term (50 years) large-scale ecological trends for both estuaries over the last. Our model indicated that hydrodynamic alterations following the deepening of the Westerschelde had negative implications for benthic life, while the realization of the Oosterschelde storm surge barriers had mixed and habitat-dependent responses, that also include unexpected improvement of environmental quality. Our analysis illustrates long-term trends in the natural community caused by opposing management strategies. The divergent human pressures on the Oosterschelde and Westerschelde are examples of what could happen in a near future for many global coastal ecosystems. The comparative analysis of the two basins is a valuable source of information to understand (and communicate) the future ecological consequences of human coastal development.

Constraining the fault slip rate using morphology of normal fault footwalls: insights from analog and numerical models (Invited)

NASA Astrophysics Data System (ADS)

Strak, V.; Dominguez, S.; Petit, C.; Meyer, B.; Loget, N.

2013-12-01

Relief evolution in active tectonic areas is controlled by the interactions between tectonics and surface processes (erosion, transport and sedimentation). These interactions lead to the formation of geomorphologic markers that remain stable during the equilibrium reached in the long-term between tectonics and erosion. In regions experiencing active extension, drainage basins and faceted spurs (triangular facets) are such long-lived morphologic markers and they can help in quantifying the competing effects between tectonics, erosion and sedimentation. We performed analog and numerical models simulating the morphologic evolution of a mountain range bounded by a normal fault. In each approach we imposed identical initial conditions. We carried out several models by varying the fault slip rate (V) and keeping a constant rainfall rate allowing us to study the effect of V on morphology. Both approaches highlight the main control of V on the topographic evolution of the footwall. The experimental approach shows that V controls erosion rates (incision rate, erosion rate of slopes and regressive erosion rate) and possibly the height of triangular facets. This approach indicates likewise that the parameter K of the stream power law depends on V even for non-equilibrium topography. The numerical approach corroborates the control of V on erosion rates and facet height. It also shows a correlation between the shape of drainage basins and V (slope-area relationship) and it suggests the same for the parameters of the stream power law. Therefore both approaches suggest the possibility of using the height of triangular facets and the slope-area relationship to infer the fault slip rate of normal faults situated in a given climatic context.

Pollinator-mediated selection on floral morphology: evidence for transgressive evolution in a derived hybrid lineage.

PubMed

Anton, K A; Ward, J R; Cruzan, M B

2013-03-01

Hybridization between closely related lineages is a mechanism that might promote substantive changes in phenotypic traits of descendants, resulting in transgressive evolution. Interbreeding between divergent but morphologically similar lineages can produce exceptional phenotypes, but the potential for transgressive variation to facilitate long-term trait changes in derived hybrid lineages has received little attention. We compare pollinator-mediated selection on transgressive floral traits in both early-generation and derived hybrid lineages of the Piriqueta cistoides ssp. caroliniana complex. The bowl-shaped flowers of morphotypes in this complex have similar gross morphologies and attract a common suite of small insect pollinators. However, they are defined by significant differences in characters that generate pollinator interest and visitation, including floral area and petal separation. In common garden experiments, patterns of pollen deposition in early-generation recombinant hybrids indicate that Piriqueta's pollinators favour flowers with greater area and reduced petal separation. Changes in floral morphology in derived hybrid lineages are consistent with predictions from selection gradients, but the magnitude of change is limited relative to the range of transgressive variation. These results suggest that hybridization provides variation for evolution of divergent floral traits. However, the potential for extreme transgressive variants to contribute to phenotypic shifts may be limited due to reduced heritability, evolutionary constraints or fitness trade-offs. © 2013 The Authors. Journal of Evolutionary Biology © 2013 European Society For Evolutionary Biology.

A multiscale climate emulator for long-term morphodynamics (MUSCLE-morpho)

NASA Astrophysics Data System (ADS)

Antolínez, José Antonio A.; Méndez, Fernando J.; Camus, Paula; Vitousek, Sean; González, E. Mauricio; Ruggiero, Peter; Barnard, Patrick

2016-01-01

Interest in understanding long-term coastal morphodynamics has recently increased as climate change impacts become perceptible and accelerated. Multiscale, behavior-oriented and process-based models, or hybrids of the two, are typically applied with deterministic approaches which require considerable computational effort. In order to reduce the computational cost of modeling large spatial and temporal scales, input reduction and morphological acceleration techniques have been developed. Here we introduce a general framework for reducing dimensionality of wave-driver inputs to morphodynamic models. The proposed framework seeks to account for dependencies with global atmospheric circulation fields and deals simultaneously with seasonality, interannual variability, long-term trends, and autocorrelation of wave height, wave period, and wave direction. The model is also able to reproduce future wave climate time series accounting for possible changes in the global climate system. An application of long-term shoreline evolution is presented by comparing the performance of the real and the simulated wave climate using a one-line model. This article was corrected on 2 FEB 2016. See the end of the full text for details.

Morphosedimentary evolution of carbonate sandy beaches at decadal scale : case study in Reunion Island , Indian Ocean

NASA Astrophysics Data System (ADS)

Mahabot, Marie-Myriam; Pennober, Gwenaelle; Suanez, Serge; Troadec, Roland; Delacourt, Christophe

2017-04-01

Global change introduce a lot of uncertainties concerning future trajectory of beaches by directly or indirectly modifying major driving factors. An improved understanding of the past shoreline evolution may help for anticipate future coastline response. However, in tropical environment, studies concerning carbonate beaches dynamics are scarce compared to open sandy beaches. Consequently, coral reef protected beaches morphological adjustment is still poorly understood and long-term evolution rate are poorly quantified in these specific environment. In this context, La Reunion Island, insular department of France located in Indian Ocean, constitute a favoured laboratory. This high volcanic island possesses 25 km of carbonate beaches which experience hydrodynamic forcing specific from tropical environment: cyclonic swell during summer and long period swell during winter. Because of degraded coral reef health and high anthropogenic pressure, 50% of the beaches are in erosion since 1970s. Beach survey has been conducted since 1990s by scientist and are now encompassed as pilot site within a French observatory network which guarantee long-term survey with high resolution observational techniques. Thus, La Reunion Island is one of the rare carbonate beach to be surveyed since 20 years. This study aims to examined and quantify beach response at decadal scale on carbonate sandy beaches of Reunion Island. The study focus on 12 km of beaches from Cap Champagne to the Passe de Trois-Bassins. The analyze of 15 beach profile data originated from historical and DGPS beach topographic data confirm long term trend to erosion. Sediment lost varies between 0.5 and 2 m3.yr-1 since 1998. However longshore current have led to accretion of some part of beach compartment with rate of 0.7 to 1.6 m3.yr-1. Wave climate was examined from in-situ measurement over 15 years and show that extreme waves associated with tropical cyclones and long period swell play a major role in beach dynamics. Swell frequency and intensity are both determinant for beach evolution.

Ecological succession in long-term experimentally evolved biofilms produces synergistic communities

PubMed Central

Poltak, Steffen R; Cooper, Vaughn S

2011-01-01

Many biofilm populations are known for their exceptional biodiversity, but the relative contributions of the forces that could produce this diversity are poorly understood. This uncertainty grows in the old, well-established communities found on many natural surfaces and in long-term, chronic infections. If the prevailing interactions among species within biofilms are positive, productivity should increase with diversity, but if they tend towards competition or antagonism, productivity should decrease. Here, we describe the parallel evolution of synergistic communities derived from a clone of Burkholderia cenocepacia during ∼1500 generations of biofilm selection. This long-term evolution was enabled by a new experimental method that selects for daily cycles of colonization, biofilm assembly and dispersal. Each of the six replicate biofilm populations underwent a common pattern of adaptive morphological diversification, in which three ecologically distinct morphotypes arose in the same order of succession and persisted. In two focal populations, mixed communities were more productive than any monoculture and each variant benefited from the mixture. These gains in output resulted from asymmetrical cross-feeding between ecotypes and the expansion and partitioning of biofilm space that constructed new niches. Therefore, even in the absence of starting genetic variation, prolonged selection for surface colonization generates a dynamic of ecological succession that enhances productivity. PMID:20811470

Ecological succession in long-term experimentally evolved biofilms produces synergistic communities.

PubMed

Poltak, Steffen R; Cooper, Vaughn S

2011-03-01

Many biofilm populations are known for their exceptional biodiversity, but the relative contributions of the forces that could produce this diversity are poorly understood. This uncertainty grows in the old, well-established communities found on many natural surfaces and in long-term, chronic infections. If the prevailing interactions among species within biofilms are positive, productivity should increase with diversity, but if they tend towards competition or antagonism, productivity should decrease. Here, we describe the parallel evolution of synergistic communities derived from a clone of Burkholderia cenocepacia during ~1500 generations of biofilm selection. This long-term evolution was enabled by a new experimental method that selects for daily cycles of colonization, biofilm assembly and dispersal. Each of the six replicate biofilm populations underwent a common pattern of adaptive morphological diversification, in which three ecologically distinct morphotypes arose in the same order of succession and persisted. In two focal populations, mixed communities were more productive than any monoculture and each variant benefited from the mixture. These gains in output resulted from asymmetrical cross-feeding between ecotypes and the expansion and partitioning of biofilm space that constructed new niches. Therefore, even in the absence of starting genetic variation, prolonged selection for surface colonization generates a dynamic of ecological succession that enhances productivity.

Solar radiation and landscape evolution: co-evolution of topography, vegetation, and erosion rates in a semi-arid ecosystem

NASA Astrophysics Data System (ADS)

Istanbulluoglu, Erkan; Yetemen, Omer

2016-04-01

In this study CHILD landscape evolution model (LEM) is used to study the role of solar radiation on the co-evolution of landscape morphology, vegetation patterns, and erosion rates in a central New Mexico catchment. In the study site north facing slopes (NFS) are characterized by steep diffusion-dominated planar hillslopes covered by co-exiting juniper pine and grass vegetation. South facing slopes (SFS) are characterized by shallow slopes and covered by sparse shrub vegetation. Measured short-term and Holocene-averaged erosion rates show higher soil loss on SFS than NFS. In this study CHILD LEM is first confirmed with ecohydrologic field data and used to systematically examine the co-evolution of topography, vegetation pattern, and erosion rates. Aspect- and network-control are identified as the two main topographic drivers of soil moisture and vegetation organization on the landscape. Landscape-scale and long-term implications of solar radiation driven ecohdrologic patterns emerged in modeled landscape: NFS supported denser vegetation cover and became steeper and planar, while on SFS vegetation grew sparser and slopes declined with more fluvial activity. At the landscape scale, these differential erosion processes led to asymmetric development of catchment forms, consistent with regional observations. While the general patterns of vegetation and topography were reproduced by the model using a stationary representation of the current climate, the observed differential Holocene erosion rates were captured by the model only when cyclic climate is used. This suggests sensitivity of Holocene erosion rates to long-term climate fluctuations.

Escarpment evolution on high-elevation rifted margins: Insights derived from a surface processes model that combines diffusion, advection and reaction

NASA Technical Reports Server (NTRS)

Kooi, Henk; Beaumont, Christopher

1994-01-01

Experiments with a surface processes model of large-scale (1-1000 km) long-term (1-100 m.y.) erosional denudation are used to establish the controls on the evolution of a model escarpment that is related to the rifting of a continent. The mdoel describes changes in topographic form as a result of sumultaneous short- and long-range mass transport representing hillslope (diffusive) processes and fluvial transport (advection), repsectively. Fluvial entrainment is modeled as a first-order kinetic reaction which reflects the erodibility of the substrate, and therefore the fluvial system is not necessarily carrying at capacity. One dimensional and planform models demonstrate that the principal controls on the evolution of an initially steep model escarpment are (1) antecedent topography/drainage; (2) the timesale (or equivalently a length scale) in the fluvial entrainment reaction; (3) the flexural response of the lithosphere to denudation; and (4) the relative efficiencies of the short- and long-range transport processes. When rainfall and substrate lithology are uniform, a significant amount of discharge draining over the escarpment top causes it to degrade. Only when the top of the model escarpment coincides with a drainage divide can escarpment retreat occur for these conditions. An additional requirement for retreat of a model escarpment without decline is a long reaction time scale for fluvial entrainment. This corresponds to a substrate that is hard to detach by flucial erosion, and therefore to fluvial erosion that is not transport limited. Coninuous backtilting of an escarpment due ot flexural isostatic uplift in response to denudational unloading helps maintain the scarp top as a divide. It is essntial if the escarpment gradient is to be preserved during retreat in a uniform lithology. Low flexural rigidieties propote steep and slowly retreating escarpments. For given rainfall and substrate conditions, the morphology of a retraeating model escarpment is determined by the ratio of hte short-range diffusive and long range advective transport efficiencies. A low ration (which is interpreted to correspond to a more humid, temperate climate) produces a convex upper slope, and concave lower slope morphology and only major escarpments are predicted to preserve a high scarp gradient. Lithological contrasts in hte model produce more complex morphologies and predict the formation of scarps crowned by an erosionaly resistant caprock. However, resistant caprocks are not an essential requirement for model scarps to retreat. We conclude that the inferred controls and model behavior are both consistent with the present-day morphology of rifted continental margins and with modern conceptual models of landscape evolution.

Influence of Fluoride Ion on the Performance of Pb-Ag Anode During Long-Term Galvanostatic Electrolysis

NASA Astrophysics Data System (ADS)

Zhong, Xiaocong; Yu, Xiaoying; Jiang, Liangxing; Lv, Xiaojun; Liu, Fangyang; Lai, Yanqing; Li, Jie

2015-09-01

Anodic potential, morphology and phase composition of the anodic layer, corrosion morphology of the metallic substrate, and oxygen evolution behavior of Pb-Ag anode in H2SO4 solution without/with fluoride ion were investigated and compared. The results showed that the presence of fluoride ions contributed to a smoother anodic layer with lower PbO2 concentration, which resulted in lower double layer capacity and higher charge transfer resistance for the oxygen evolution reaction. Consequently, the Pb-Ag anode showed a higher anodic potential (about 35 mV) in the fluoride-containing electrolyte. In addition, the fluoride ions accelerated the detachment of loose flakes on the anodic layer. It was demonstrated that the anodic layer formed in the fluoride-containing H2SO4 solution was thinner. Furthermore, fluoride ions aggravated the corrosion of the metallic substrate at interdendritic boundary regions. Hence, the presence of fluoride ions is detrimental to oxygen evolution reactivity and increases the corrosion of the Pb-Ag anode, which may further increase the energy consumption and capital cost of zinc plants.

Clownfishes evolution below and above the species level

PubMed Central

Litsios, Glenn; Faye, Laurélène; Salamin, Nicolas

2018-01-01

The difference between rapid morphological evolutionary changes observed in populations and the long periods of stasis detected in the fossil record has raised a decade-long debate about the exact role played by intraspecific mechanisms at the interspecific level. Although they represent different scales of the same evolutionary process, micro- and macroevolution are rarely studied together and few empirical studies have compared the rates of evolution and the selective pressures between both scales. Here, we analyse morphological, genetic and ecological traits in clownfishes at different evolutionary scales and demonstrate that the tempo of molecular and morphological evolution at the species level can be, to some extent, predicted from parameters estimated below the species level, such as the effective population size or the rate of evolution within populations. We also show that similar codons in the gene of the rhodopsin RH1, a light-sensitive receptor protein, are under positive selection at the intra and interspecific scales, suggesting that similar selective pressures are acting at both levels. PMID:29467260

Ecohydrologic role of solar radiation on landscape evolution

NASA Astrophysics Data System (ADS)

Yetemen, Omer; Istanbulluoglu, Erkan; Flores-Cervantes, J. Homero; Vivoni, Enrique R.; Bras, Rafael L.

2015-02-01

Solar radiation has a clear signature on the spatial organization of ecohydrologic fluxes, vegetation patterns and dynamics, and landscape morphology in semiarid ecosystems. Existing landscape evolution models (LEMs) do not explicitly consider spatially explicit solar radiation as model forcing. Here, we improve an existing LEM to represent coupled processes of energy, water, and sediment balance for semiarid fluvial catchments. To ground model predictions, a study site is selected in central New Mexico where hillslope aspect has a marked influence on vegetation patterns and landscape morphology. Model predictions are corroborated using limited field observations in central NM and other locations with similar conditions. We design a set of comparative LEM simulations to investigate the role of spatially explicit solar radiation on landscape ecohydro-geomorphic development under different uplift scenarios. Aspect-control and network-control are identified as the two main drivers of soil moisture and vegetation organization on the landscape. Landscape-scale and long-term implications of these short-term ecohdrologic patterns emerged in modeled landscapes. As north facing slopes (NFS) get steeper by continuing uplift they support erosion-resistant denser vegetation cover which leads to further slope steepening until erosion and uplift attains a dynamic equilibrium. Conversely, on south facing slopes (SFS), as slopes grow with uplift, increased solar radiation exposure with slope supports sparser biomass and shallower slopes. At the landscape scale, these differential erosion processes lead to asymmetric development of catchment forms, consistent with regional observations. Understanding of ecohydrogeomorphic evolution will improve to assess the impacts of past and future climates on landscape response and morphology.

Morphological characteristics and medium-term evolution of the beaches between Ceuta and Cabo Negro (Morocco)

NASA Astrophysics Data System (ADS)

Anfuso, G.; Martínez Del Pozo, J. A.; Nachite, D.; Benavente, J.; Macias, A.

2007-05-01

This work presents the results of a combined study on the beach morphology and the evolution at short- and medium-term of the littoral between Ceuta and Cabo Negro (Morocco). It is an interesting sector showing a great increase of human occupation and coastal structures. The monitoring program allowed for the reconstruction of the beach morphological behavior and the seasonal changes. The studied beaches presented reflective profiles recording little seasonality, with the most notable morphological changes being strictly related to storms. Surf Similarity and Surf Scaling parameters highlighted the existence of intermediate and reflective beach states, characterized by plunging breakers. Aerial photographs and a satellite image have been geo-referenced and elaborated with GIS tools to reconstruct the short- and medium-term evolution of the littoral and the sediment transport pathways. The littoral showed important erosion at short- and medium-term related to a negative sedimentary budget because of offshore transport. Sand accumulation was recorded close to the main ports, i.e., Marina Smir and Marina Kabila. These port structures constituted impermeable, fixed limits, which divided the studied area into littoral cells. Other free, transit limits were also observed.

Prediction of barrier island restoration response and its interactions with the natural environment

NASA Astrophysics Data System (ADS)

Plant, N. G.; Stockdon, H. F.; Flocks, J.; Sallenger, A. H.; Long, J. W.; Cormier, J. M.; Guy, K.; Thompson, D. M.

2012-12-01

A 2-meter high sand berm was constructed along Chandeleur Island, Louisiana, in an attempt to provide protection against the Deepwater Horizon oil spill. Berm construction started in June 2010 and ended in April 2011. Variations in both island morphology and construction of the 15-km long berm resulted in the development of four different morphologies: a berm built on a submerged island platform to the north of the existing island, a berm built seaward of the existing island, a berm built along the island shoreline, and portions of the island where no berm was constructed. These different morphologies provide a natural laboratory for testing the understanding of berm and barrier island response to storms. In particular, the ability to predict berm evolution using statistical modeling of the interactions between the island, berm, and oceanographic processes was tested. This particular test was part of a broader USGS research effort to understand processes that bridge the gap between short-term storm response and longer-term geologic and climate interactions that shape barrier-island systems. Berm construction and subsequent berm and island evolution were monitored using satellite and aerial remote sensing and topographic and bathymetric surveys. To date, significant berm evolution occurred in both the north (including terminal erosion, overwash, and a large breach), center (overwash and numerous breaches), and south (overwash). The response of the central portion of the berm to winter and tropical storms was significant such that none of the residual berm remained within its construction footprint. The evolution of the central portion of the berm was well predicted using a statistical modeling approach that used predicted and modeled wave conditions to identify the likelihood of overwash events. Comparison of different modeled evolution scenarios to the one that was observed showed that berm response was sensitive to the frequency and severity of winter and tropical storms. These findings demonstrate an observation and modeling approach that can be applied to understanding and managing other natural and restored barrier islands.

Solar-insolation-induced changes in the coma morphology of comet 67P/Churyumov-Gerasimenko. Optical monitoring with the Nordic Optical Telescope

NASA Astrophysics Data System (ADS)

Zaprudin, B.; Lehto, H. J.; Nilsson, K.; Somero, A.; Pursimo, T.; Snodgrass, C.; Schulz, R.

2017-07-01

Context. 67P/Churyumov-Gerasimenko (67P/C-G) is a short-period Jupiter family comet with an orbital period of 6.55 yr. Being the target comet of ESA's Rosetta mission, 67P/C-G has become one of the most intensively studied minor bodies of the solar system. The Rosetta Orbiter and the Philae Lander have brought us unique information about the structure and activity of the comet nucleus, as well as its activity along the orbit, composition of gas, and dust particles emitted into the coma. However, as Rosetta stayed in very close proximity to the cometary nucleus (less than 500 km with a few short excursions reaching up to 1500 km), it could not see the global picture of a coma at the scales reachable by telescopic observations (103 - 105 km). Aims: In this work we aim to connect in-situ observations made by Rosetta with the morphological evolution of the coma structures monitored by the ground-based observations. In particular, we concentrate on causal relationships between the coma morphology and evolution observed with the Nordic Optical Telescope (NOT) in the Canary Islands, and the seasonal changes of the insolation and the activity of the comet observed by the Rosetta instruments. Methods: Comet 67P/C-G was monitored with the NOT in imaging mode in two colors. Imaging optical observations were performed roughly on a weekly basis, which provides good coverage of short- and long-term variability. With the three dimensional modeling of the coma produced by active regions on the southern hemisphere, we aim to qualify the observed morphology by connecting it to the activity observed by Rosetta. Results: During our monitoring program, we detected major changes in the coma morphology of comet 67P/C-G. These were long-term and long-lasting changes. They do not represent any sudden outburst or short transient event, but are connected to seasonal changes of the surface insolation and the emergence of new active regions on the irregular shaped comet nucleus. We have also found significant deviations in morphological changes from the prediction models based on previous apparitions of 67P/C-G, like the time delay of the morphology changes and the reduced activity in the northern hemisphere. According to our modeling of coma structures and geometry of observations, the changes are clearly connected with the activity in the southern hemisphere observed by the Rosetta spacecraft.

Geologic control on the evolution of the inner shelf morphology offshore of the Mississippi barrier islands, northern Gulf of Mexico, USA

USGS Publications Warehouse

Flocks, James G.; Kindinger, Jack G.; Kelso, Kyle W.

2015-01-01

Between 2008 and 2013, high-resolution geophysical surveys were conducted around the Mississippi barrier islands and offshore. The sonar surveys included swath and single-beam bathymetry, sidescan, and chirp subbottom data collection. The geophysical data were groundtruthed using vibracore sediment collection. The results provide insight into the evolution of the inner shelf and the relationship between the near surface geologic framework and the morphology of the coastal zone. This study focuses on the buried Pleistocene fluvial deposits and late Holocene shore-oblique sand ridges offshore of Petit Bois Island and Petit Bois Pass. Prior to this study, the physical characteristics, evolution, and interrelationship of the ridges between both the shelf geology and the adjacent barrier island platform had not been evaluated. Numerous studies elsewhere along the coastal margin attribute shoal origin and sand-ridge evolution to hydrodynamic processes in shallow water (<20 m). Here we characterize the correlation between the geologic framework and surface morphology and demonstrate that the underlying stratigraphy must also be considered when developing an evolutionary conceptual model. It is important to understand this near surface, nearshore dynamic in order to understand how the stratigraphy influences the long-term response of the coastal zone to sea-level rise. The study also contributes to a growing body of work characterizing shore-oblique sand ridges which, along with the related geology, are recognized as increasingly important components to a nearshore framework whose origins and evolution must be understood and inventoried to effectively manage the coastal zone.

Geologic control on the evolution of the inner shelf morphology offshore of the Mississippi barrier islands, northern Gulf of Mexico, USA

NASA Astrophysics Data System (ADS)

Flocks, James G.; Kindinger, Jack L.; Kelso, Kyle W.

2015-06-01

Between 2008 and 2013, high-resolution geophysical surveys were conducted around the Mississippi barrier islands and offshore. The sonar surveys included swath and single-beam bathymetry, sidescan, and chirp subbottom data collection. The geophysical data were groundtruthed using vibracore sediment collection. The results provide insight into the evolution of the inner shelf and the relationship between the near surface geologic framework and the morphology of the coastal zone. This study focuses on the buried Pleistocene fluvial deposits and late Holocene shore-oblique sand ridges offshore of Petit Bois Island and Petit Bois Pass. Prior to this study, the physical characteristics, evolution, and interrelationship of the ridges between both the shelf geology and the adjacent barrier island platform had not been evaluated. Numerous studies elsewhere along the coastal margin attribute shoal origin and sand-ridge evolution to hydrodynamic processes in shallow water (<20 m). Here we characterize the correlation between the geologic framework and surface morphology and demonstrate that the underlying stratigraphy must also be considered when developing an evolutionary conceptual model. It is important to understand this near surface, nearshore dynamic in order to understand how the stratigraphy influences the long-term response of the coastal zone to sea-level rise. The study also contributes to a growing body of work characterizing shore-oblique sand ridges which, along with the related geology, are recognized as increasingly important components to a nearshore framework whose origins and evolution must be understood and inventoried to effectively manage the coastal zone.

Landslides control the spatial and temporal variation of channel width in southern Taiwan: implications for landscape evolution and cascading hazards in steep, tectonically active landscapes

NASA Astrophysics Data System (ADS)

Yanites, B.; Bregy, J. C.; Carlson, G.; Cataldo, K.; Holahan, M.; Johnston, G.; Mitchell, N. A.; Nelson, A.; Valenza, J.; Wanker, M.

2017-12-01

Intense precipitation or seismic events can generate clustered mass movement processes across a landscape. These rare events have significant impacts on the landscape, however, the rarity of such events leads to uncertainty in how these events impact the entire geomorphic system over a range of timescales. Taiwan is a steep, seismically active region and is highly prone to landslide and debris flows, especially when exposed to heavy rainfall events. Typhoon Morakot made landfall in Taiwan in August of 2009, delivering record-breaking rainfall and inducing more than 22,000 landslides in southern Taiwan. The topographic gradient in southern Taiwan leads to spatial variability in landslide susceptibility providing an opportunity to infer the long-term impact of landslides on channel morphology. The availability of pre and post typhoon imagery allows a quantitative reconstruction on the propagating impact of this event on channel width. The pre and post typhoon patterns of channel width to river and hillslope gradients in 20 basins in the study area reveal the importance of cascading hazards from landslides on landscape evolution. Prior to Typhoon Morakot, the river channels in the central part of the study area were about 3-10 times wider than the channels in the south. Aggradation and widening was also a maximum in these basins where hillslope gradients and channel steepness is high. The results further show that the narrowest channels are located where channel steepness is the lowest, an observation inconsistent with a detachment-limited model for river evolution. We infer this pattern is indicative of a strong role of sediment supply, and associated landslide events, on long-term channel evolution. These findings have implications across a range of spatial and temporal scales including understanding the cascade of hazards in steep landscapes and geomorphic interpretation of channel morphology.

Holocene Evolution of Incised Coastal Channels on the Isle of Wight, UK: Interpretation via Numerical Simulation.

NASA Astrophysics Data System (ADS)

Leyland, J.; Darby, S. E.

2006-12-01

Incised coastal channels are found in numerous locations around the world where the shoreline morphology consists of cliffs. The incised coastal channels found on the Isle of Wight, UK, are known locally as `Chines' and debouche (up to 45m) through the soft cliffs of the south west coast, maintaining steep side walls subject to deep-seated mass wasting. These canyons offer sheltered locations and bare substrate, providing habitat for plant (Philonotis marchica, Anthoceros punctatos) and invertebrate (Psen atratinus, Baris analis, Melitaea cinxi) species of international importance. The base level of the Chines is highly dynamic, with episodes of sea cliff erosion causing the rejuvenation of the channel network. Consequently a key factor in Chine evolution is the relative balance between rates of cliff retreat and headwards incision caused by knickpoint migration. Specifically, there is concern that if contemporary coastal retreat rates are higher than the corresponding rates of knickpoint recession, there will be long-term a reduction in the overall extent of the Chines and their associated habitats. In an attempt to provide a long-term context for these issues, in this poster we explore the Holocene erosional history of the Chines using a numerical landscape evolution model. The model includes a stochastic cliff recession function that controls the position of the outlet boundary. Knickpoint recession rates are simulated using a detachment-limited channel erosion law wherein erosion rate is a power function of drainage area and stream gradient with model parameters defined using empirically- derived data. Simulations are undertaken for a range of imposed boundary conditions representing different scenarios of long-term cliff retreat forced by Holocene sea-level rise, plausible scenarios corresponding to cases where simulated and observed Chine and landscape forms match. The study provides an example of how a landscape evolution model could be used to reconstruct Holocene coastal processes, as well as providing the long-term context necessary to manage Chine habitats appropriately. In particular a critical threshold drainage area is defined that provides knickpoint recession rates that are sufficient to generate self- sustaining Chines in relation to cliff recession rates.

Short- and long-term consequences of early developmental conditions: a case study on wild and domesticated zebra finches.

PubMed

Tschirren, B; Rutstein, A N; Postma, E; Mariette, M; Griffith, S C

2009-02-01

Divergent selection pressures among populations can result not only in significant differentiation in morphology, physiology and behaviour, but also in how these traits are related to each other, thereby driving the processes of local adaptation and speciation. In the Australian zebra finch, we investigated whether domesticated stock, bred in captivity over tens of generations, differ in their response to a life-history manipulation, compared to birds taken directly from the wild. In a 'common aviary' experiment, we thereto experimentally manipulated the environmental conditions experienced by nestlings early in life by means of a brood size manipulation, and subsequently assessed its short- and long-term consequences on growth, ornamentation, immune function and reproduction. As expected, we found that early environmental conditions had a marked effect on both short- and long-term morphological and life-history traits in all birds. However, although there were pronounced differences between wild and domesticated birds with respect to the absolute expression of many of these traits, which are indicative of the different selection pressures wild and domesticated birds were exposed to in the recent past, manipulated rearing conditions affected morphology and ornamentation of wild and domesticated finches in a very similar way. This suggests that despite significant differentiation between wild and domesticated birds, selection has not altered the relationships among traits. Thus, life-history strategies and investment trade-offs may be relatively stable and not easily altered by selection. This is a reassuring finding in the light of the widespread use of domesticated birds in studies of life-history evolution and sexual selection, and suggests that adaptive explanations may be legitimate when referring to captive bird studies.

Dinosaur morphological diversity and the end-Cretaceous extinction.

PubMed

Brusatte, Stephen L; Butler, Richard J; Prieto-Márquez, Albert; Norell, Mark A

2012-05-01

The extinction of non-avian dinosaurs 65 million years ago is a perpetual topic of fascination, and lasting debate has focused on whether dinosaur biodiversity was in decline before end-Cretaceous volcanism and bolide impact. Here we calculate the morphological disparity (anatomical variability) exhibited by seven major dinosaur subgroups during the latest Cretaceous, at both global and regional scales. Our results demonstrate both geographic and clade-specific heterogeneity. Large-bodied bulk-feeding herbivores (ceratopsids and hadrosauroids) and some North American taxa declined in disparity during the final two stages of the Cretaceous, whereas carnivorous dinosaurs, mid-sized herbivores, and some Asian taxa did not. Late Cretaceous dinosaur evolution, therefore, was complex: there was no universal biodiversity trend and the intensively studied North American record may reveal primarily local patterns. At least some dinosaur groups, however, did endure long-term declines in morphological variability before their extinction.

Biogeochemical control points in a water-limited critical zone

NASA Astrophysics Data System (ADS)

Chorover, J.; Brooks, P. D.; Gallery, R. E.; McIntosh, J. C.; Olshansky, Y.; Rasmussen, C.

2017-12-01

The routing of water and carbon through complex terrain is postulated to control structure evolution in the sub-humid critical zone of the southwestern US. By combining measurements of land-atmosphere exchange, ecohydrologic partitioning, and subsurface biogeochemistry, we seek to quantify how a heterogeneous (in time and space) distribution of "reactants" impacts both short-term (sub-)catchment response (e.g., pore and surface water chemical dynamics) and long-term landscape evolution (e.g., soil geochemistry/morphology and regolith weathering depth) in watersheds underlain by rhyolite and schist. Instrumented pedons in convergent, planar, and divergent landscape positions show distinct depth-dependent responses to precipitation events. Wetting front propagation, dissolved carbon flux and associated biogeochemical responses (e.g., pulses of CO2 production, O2 depletion, solute release) vary with topography, revealing the influence of lateral subsidies of water and carbon. The impacts of these episodes on the evolution of porous media heterogeneity is being investigated by statistical analysis of pore water chemistry, chemical/spectroscopic studies of solid phase organo-mineral products, sensor-derived water characteristic curves, and quantification of co-located microbial community activity/composition. Our results highlight the interacting effects of critical zone structure and convergent hydrologic flows in the evolution of biogeochemical control points.

Beyond neutral and forbidden links: morphological matches and the assembly of mutualistic hawkmoth-plant networks.

PubMed

Sazatornil, Federico D; Moré, Marcela; Benitez-Vieyra, Santiago; Cocucci, Andrea A; Kitching, Ian J; Schlumpberger, Boris O; Oliveira, Paulo E; Sazima, Marlies; Amorim, Felipe W

2016-11-01

A major challenge in evolutionary ecology is to understand how co-evolutionary processes shape patterns of interactions between species at community level. Pollination of flowers with long corolla tubes by long-tongued hawkmoths has been invoked as a showcase model of co-evolution. Recently, optimal foraging models have predicted that there might be a close association between mouthparts' length and the corolla depth of the visited flowers, thus favouring trait convergence and specialization at community level. Here, we assessed whether hawkmoths more frequently pollinate plants with floral tube lengths similar to their proboscis lengths (morphological match hypothesis) against abundance-based processes (neutral hypothesis) and ecological trait mismatches constraints (forbidden links hypothesis), and how these processes structure hawkmoth-plant mutualistic networks from five communities in four biogeographical regions of South America. We found convergence in morphological traits across the five communities and that the distribution of morphological differences between hawkmoths and plants is consistent with expectations under the morphological match hypothesis in three of the five communities. In the two remaining communities, which are ecotones between two distinct biogeographical areas, interactions are better predicted by the neutral hypothesis. Our findings are consistent with the idea that diffuse co-evolution drives the evolution of extremely long proboscises and flower tubes, and highlight the importance of morphological traits, beyond the forbidden links hypothesis, in structuring interactions between mutualistic partners, revealing that the role of niche-based processes can be much more complex than previously known. © 2016 The Authors. Journal of Animal Ecology © 2016 British Ecological Society.

Simulating the evolution of coastal morphology and stratigraphy with a new morphological-behaviour model (GEOMBEST)

USGS Publications Warehouse

Stolper, D.; List, J.H.; Thieler, E.R.

2005-01-01

A new morphological-behaviour model is used to simulate evolution of coastal morphology associated with cross-shore translations of the shoreface, barrier, and estuary. The model encapsulates qualitative principles drawn from established geological concepts that are parameterized to provide quantitative predictions of morphological change on geological time scales (order 10 3 years), as well as shorter time scales applicable for long-term coastal management (order 101 to 102 years). Changes in sea level, and sediment volume within the shoreface, barrier, and estuary, drive the model behaviour. Further parameters, defining substrate erodibility, sediment composition, and time-dependent shoreface response, constrain the evolution of the shoreface towards an equilibrium profile. Results from numerical experiments are presented for the low-gradient autochthonous setting of North Carolina and the steep allochthonous setting of the Washington shelf. Simulations in the Currituck region of North Carolina examined the influence of sediment supply, substrate composition, and substrate erodibility on barrier transgression. Results demonstrate that the presence of a lithified substrate reduces the rate of barrier transgression compared to scenarios where an erodible, sand-rich substrate exists. Simulations of the Washington coast, 20 km north of the Columbia River, confirmed that the model can reproduce complex stratigraphy involving regressive and transgressive phases of coastal evolution. Results suggest that the first major addition of sediment to the shelf occurred around 12 900 years ago and resulted from the rapid addition of sediment volume from the Columbia River attributed to the Missoula floods. This was followed by a period where little or no sediment was added (12 400-9100 BP) and a third period when most sediment was added to the shelf (9100 BP to present) from the Columbia River. Comparing results from each setting demonstrates an indirect control that substrate slope has on shoreface transgression rates. Shoreface transgression is shown to be sensitive to the rate of estuarine sedimentation, with the sensitivity increasing as substrate slope decreases. 

Comprehensive Representation of Hydrologic and Geomorphic Process Coupling in Numerical Models: Internal Dynamics and Basin Evolution

NASA Astrophysics Data System (ADS)

Istanbulluoglu, E.; Vivoni, E. R.; Ivanov, V. Y.; Bras, R. L.

2005-12-01

Landscape morphology has an important control on the spatial and temporal organization of basin hydrologic response to climate forcing, affecting soil moisture redistribution as well as vegetation function. On the other hand, erosion, driven by hydrology and modulated by vegetation, produces landforms over geologic time scales that reflect characteristic signatures of the dominant land forming process. Responding to extreme climate events or anthropogenic disturbances of the land surface, infrequent but rapid forms of erosion (e.g., arroyo development, landsliding) can modify topography such that basin hydrology is significantly influenced. Despite significant advances in both hydrologic and geomorphic modeling over the past two decades, the dynamic interactions between basin hydrology, geomorphology and terrestrial ecology are not adequately captured in current model frameworks. In order to investigate hydrologic-geomorphic-ecologic interactions at the basin scale we present initial efforts in integrating the CHILD landscape evolution model (Tucker et al. 2001) with the tRIBS hydrology model (Ivanov et al. 2004), both developed in a common software environment. In this talk, we present preliminary results of the numerical modeling of the coupled evolution of basin hydro-geomorphic response and resulting landscape morphology in two sets of examples. First, we discuss the long-term evolution of both the hydrologic response and the resulting basin morphology from an initially uplifted plateau. In the second set of modeling experiments, we implement changes in climate and land-use to an existing topography and compare basin hydrologic response to the model results when landscape form is fixed (e.g. no coupling between hydrology and geomorphology). Model results stress the importance of internal basin dynamics, including runoff generation mechanisms and hydrologic states, in shaping hydrologic response as well as the importance of employing comprehensive conceptualizations of hydrology in modeling landscape evolution.

Improving understanding of near-term barrier island evolution through multi-decadal assessment of morphologic change

USGS Publications Warehouse

Lentz, Erika E.; Hapke, Cheryl J.; Stockdon, Hilary F.; Hehre, Rachel E.

2013-01-01

Observed morphodynamic changes over multiple decades were coupled with storm-driven run-up characteristics at Fire Island, New York, to explore the influence of wave processes relative to the impacts of other coastal change drivers on the near-term evolution of the barrier island. Historical topography was generated from digital stereo-photogrammetry and compared with more recent lidar surveys to quantify near-term (decadal) morphodynamic changes to the beach and primary dune system between the years 1969, 1999, and 2009. Notably increased profile volumes were observed along the entirety of the island in 1999, and likely provide the eolian source for the steady dune crest progradation observed over the relatively quiescent decade that followed. Persistent patterns of erosion and accretion over 10-, 30-, and 40-year intervals are attributable to variations in island morphology, human activity, and variations in offshore bathymetry and island orientation that influence the wave energy reaching the coast. Areas of documented long-term historical inlet formation and extensive bayside marsh development show substantial landward translation of the dune–beach profile over the near-term period of this study. Correlations among areas predicted to overwash, observed elevation changes of the dune crestline, and observed instances of overwash in undeveloped segments of the barrier island verify that overwash locations can be accurately predicted in undeveloped segments of coast. In fact, an assessment of 2012 aerial imagery collected after Hurricane Sandy confirms that overwash occurred at the majority of near-term locations persistently predicted to overwash. In addition to the storm wave climate, factors related to variations within the geologic framework which in turn influence island orientation, offshore slope, and sediment supply impact island behavior on near-term timescales.

Bi-stage time evolution of nano-morphology on inductively coupled plasma etched fused silica surface caused by surface morphological transformation

NASA Astrophysics Data System (ADS)

Jiang, Xiaolong; Zhang, Lijuan; Bai, Yang; Liu, Ying; Liu, Zhengkun; Qiu, Keqiang; Liao, Wei; Zhang, Chuanchao; Yang, Ke; Chen, Jing; Jiang, Yilan; Yuan, Xiaodong

2017-07-01

In this work, we experimentally investigate the surface nano-roughness during the inductively coupled plasma etching of fused silica, and discover a novel bi-stage time evolution of surface nano-morphology. At the beginning, the rms roughness, correlation length and nano-mound dimensions increase linearly and rapidly with etching time. At the second stage, the roughening process slows down dramatically. The switch of evolution stage synchronizes with the morphological change from dual-scale roughness comprising long wavelength underlying surface and superimposed nano-mounds to one scale of nano-mounds. A theoretical model based on surface morphological change is proposed. The key idea is that at the beginning, etched surface is dual-scale, and both larger deposition rate of etch inhibitors and better plasma etching resistance at the surface peaks than surface valleys contribute to the roughness development. After surface morphology transforming into one-scale, the difference of plasma resistance between surface peaks and valleys vanishes, thus the roughening process slows down.

Secular trends in plume composition of Erebus volcano, Antarctica

NASA Astrophysics Data System (ADS)

Ilanko, Tehnuka; Oppenheimer, Clive; Kyle, Philip; Burgisser, Alain

2015-04-01

Long-lived active lava lakes, such as that in the summit crater of Erebus volcano, Antarctica, provide a rare insight into sustained magma convection and degassing over long timescales. Erebus lava lake has been persistently active since 1972, and potentially for several decades or more previously (Ross, 1847). Since the 1970s, regular scientific expeditions, lasting a few weeks in the austral summers, have made observations of the lake activity. Annual Fourier transform infrared (FTIR) spectroscopic gas measurements began in 2004 (Oppenheimer and Kyle, 2008; Oppenheimer et al., 2009), yielding an extensive, if discontinuous, time series of infrared absorption spectra. These data, once processed, provide insights into temporal evolution of the gas geochemistry in terms of seven molecular species: H2O, CO2, CO, SO2, HCl, HF, and OCS. FTIR spectroscopic data are now available over ten field seasons, totalling roughly 1.8 million spectra and increasing each year. This period spans changes to crater morphology, fluctuations in lava lake surface area (Jones et al., 2014), and two episodes of increased explosive activity (2005-06 and 2013). The dataset captures both long-term degassing trends and short-lived features, such as cyclicity in gas emissions during passive degassing (Ilanko et al., 2015) and compositions released by explosive bubble-burst eruptions. We consider the longer-term changes to gas ratios occurring within (i.e. over days to weeks) and between annual field seasons, their potential causes, and their relationship to observations of eruptive behaviour and crater morphology.

Dynamics of dental evolution in ornithopod dinosaurs.

PubMed

Strickson, Edward; Prieto-Márquez, Albert; Benton, Michael J; Stubbs, Thomas L

2016-07-14

Ornithopods were key herbivorous dinosaurs in Mesozoic terrestrial ecosystems, with a variety of tooth morphologies. Several clades, especially the 'duck-billed' hadrosaurids, became hugely diverse and abundant almost worldwide. Yet their evolutionary dynamics have been disputed, particularly whether they diversified in response to events in plant evolution. Here we focus on their remarkable dietary adaptations, using tooth and jaw characters to examine changes in dental disparity and evolutionary rate. Ornithopods explored different areas of dental morphospace throughout their evolution, showing a long-term expansion. There were four major evolutionary rate increases, the first among basal iguanodontians in the Middle-Late Jurassic, and the three others among the Hadrosauridae, above and below the split of their two major clades, in the middle of the Late Cretaceous. These evolutionary bursts do not correspond to times of plant diversification, including the radiation of the flowering plants, and suggest that dental innovation rather than coevolution with major plant clades was a major driver in ornithopod evolution.

Dynamics of dental evolution in ornithopod dinosaurs

NASA Astrophysics Data System (ADS)

Strickson, Edward; Prieto-Márquez, Albert; Benton, Michael J.; Stubbs, Thomas L.

2016-07-01

Ornithopods were key herbivorous dinosaurs in Mesozoic terrestrial ecosystems, with a variety of tooth morphologies. Several clades, especially the ‘duck-billed’ hadrosaurids, became hugely diverse and abundant almost worldwide. Yet their evolutionary dynamics have been disputed, particularly whether they diversified in response to events in plant evolution. Here we focus on their remarkable dietary adaptations, using tooth and jaw characters to examine changes in dental disparity and evolutionary rate. Ornithopods explored different areas of dental morphospace throughout their evolution, showing a long-term expansion. There were four major evolutionary rate increases, the first among basal iguanodontians in the Middle-Late Jurassic, and the three others among the Hadrosauridae, above and below the split of their two major clades, in the middle of the Late Cretaceous. These evolutionary bursts do not correspond to times of plant diversification, including the radiation of the flowering plants, and suggest that dental innovation rather than coevolution with major plant clades was a major driver in ornithopod evolution.

Numerical models of salt marsh evolution: ecological, geomorphic, and climatic factors

USGS Publications Warehouse

Fagherazzi, Sergio; Kirwan, Matthew L.; Mudd, Simon M.; Guntenspergen, Glenn R.; Temmerman, Stijn; D'Alpaos, Andrea; van de Koppel, Johan; Rybczyk, John; Reyes, Enrique; Craft, Chris; Clough, Jonathan

2012-01-01

Salt marshes are delicate landforms at the boundary between the sea and land. These ecosystems support a diverse biota that modifies the erosive characteristics of the substrate and mediates sediment transport processes. Here we present a broad overview of recent numerical models that quantify the formation and evolution of salt marshes under different physical and ecological drivers. In particular, we focus on the coupling between geomorphological and ecological processes and on how these feedbacks are included in predictive models of landform evolution. We describe in detail models that simulate fluxes of water, organic matter, and sediments in salt marshes. The interplay between biological and morphological processes often produces a distinct scarp between salt marshes and tidal flats. Numerical models can capture the dynamics of this boundary and the progradation or regression of the marsh in time. Tidal channels are also key features of the marsh landscape, flooding and draining the marsh platform and providing a source of sediments and nutrients to the marsh ecosystem. In recent years, several numerical models have been developed to describe the morphogenesis and long-term dynamics of salt marsh channels. Finally, salt marshes are highly sensitive to the effects of long-term climatic change. We therefore discuss in detail how numerical models have been used to determine salt marsh survival under different scenarios of sea level rise.

Numerical models of salt marsh evolution: Ecological, geomorphic, and climatic factors

USGS Publications Warehouse

Fagherazzi, S.; Kirwan, M.L.; Mudd, S.M.; Guntenspergen, G.R.; Temmerman, S.; D'Alpaos, A.; Van De Koppel, J.; Rybczyk, J.M.; Reyes, E.; Craft, C.; Clough, J.

2012-01-01

Salt marshes are delicate landforms at the boundary between the sea and land. These ecosystems support a diverse biota that modifies the erosive characteristics of the substrate and mediates sediment transport processes. Here we present a broad overview of recent numerical models that quantify the formation and evolution of salt marshes under different physical and ecological drivers. In particular, we focus on the coupling between geomorphological and ecological processes and on how these feedbacks are included in predictive models of landform evolution. We describe in detail models that simulate fluxes of water, organic matter, and sediments in salt marshes. The interplay between biological and morphological processes often produces a distinct scarp between salt marshes and tidal flats. Numerical models can capture the dynamics of this boundary and the progradation or regression of the marsh in time. Tidal channels are also key features of the marsh landscape, flooding and draining the marsh platform and providing a source of sediments and nutrients to the marsh ecosystem. In recent years, several numerical models have been developed to describe the morphogenesis and long-term dynamics of salt marsh channels. Finally, salt marshes are highly sensitive to the effects of long-term climatic change. We therefore discuss in detail how numerical models have been used to determine salt marsh survival under different scenarios of sea level rise. Copyright 2012 by the American Geophysical Union.

Effect of Ni content on the morphological evolution of Ni-YSZ solid oxide fuel cell electrodes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chen-Wiegart, Yu-chen Karen; Kennouche, David; Scott Cronin, J.

2016-02-22

The coarsening of Ni in Ni–yttria-stabilized zirconia (YSZ) anodes is a potential cause of long term solid oxide fuel cells (SOFC) performance degradation. The specifics of the Ni-YSZ structure—including Ni/YSZ ratio, porosity, and particle size distributions—are normally selected to minimize anode polarization resistance, but they also impact long-term stability. A better understanding of how these factors influence long-term stability is important for designing more durable anodes. The effect of structural details, e.g., Ni-YSZ ratio, on Ni coarsening has not been quantified. Furthermore, prior measurements have been done by comparing evolved structures with control samples, such that sample-to-sample variations introduce errors.more » Here, we report a four dimensional (three spatial dimensions and time) study of Ni coarsening in Ni-YSZ anode functional layers with different Ni/YSZ ratios, using synchrotron x-ray nano-tomography. The continuous structural evolution was observed and analyzed at sub-100 nm resolution. It is shown quantitatively that increasing the Ni/YSZ ratio increases the Ni coarsening rate. This is due to both increased pore volume and a decrease in the YSZ volume fraction, such that there is more free volume and a less obtrusive YSZ network, both of which allow greater Ni coarsening. The results are shown to be in good agreement with a power-law coarsening model. The finding is critical for informing the design of SOFC electrode microstructures that limit coarsening and performance degradation.« less

Effect of Ni content on the morphological evolution of Ni-YSZ solid oxide fuel cell electrodes

NASA Astrophysics Data System (ADS)

Chen-Wiegart, Yu-chen Karen; Kennouche, David; Scott Cronin, J.; Barnett, Scott A.; Wang, Jun

2016-02-01

The coarsening of Ni in Ni-yttria-stabilized zirconia (YSZ) anodes is a potential cause of long term solid oxide fuel cells (SOFC) performance degradation. The specifics of the Ni-YSZ structure—including Ni/YSZ ratio, porosity, and particle size distributions—are normally selected to minimize anode polarization resistance, but they also impact long-term stability. A better understanding of how these factors influence long-term stability is important for designing more durable anodes. The effect of structural details, e.g., Ni-YSZ ratio, on Ni coarsening has not been quantified. Furthermore, prior measurements have been done by comparing evolved structures with control samples, such that sample-to-sample variations introduce errors. Here, we report a four dimensional (three spatial dimensions and time) study of Ni coarsening in Ni-YSZ anode functional layers with different Ni/YSZ ratios, using synchrotron x-ray nano-tomography. The continuous structural evolution was observed and analyzed at sub-100 nm resolution. It is shown quantitatively that increasing the Ni/YSZ ratio increases the Ni coarsening rate. This is due to both increased pore volume and a decrease in the YSZ volume fraction, such that there is more free volume and a less obtrusive YSZ network, both of which allow greater Ni coarsening. The results are shown to be in good agreement with a power-law coarsening model. The finding is critical for informing the design of SOFC electrode microstructures that limit coarsening and performance degradation.

The effect of parity on morphological evolution among phrynosomatid lizards.

PubMed

Oufiero, C E; Gartner, G E A

2014-11-01

The shift from egg laying to live-bearing is one of the most well-studied transitions in evolutionary biology. Few studies, however, have assessed the effect of this transition on morphological evolution. Here, we evaluated the effect of reproductive mode on the morphological evolution of 10 traits, among 108 species of phrynosomatid lizards. We assess whether the requirement for passing shelled eggs through the pelvic girdle has led to morphological constraints in oviparous species and whether long gestation times in viviparous species have led to constraints in locomotor morphology. We fit models to the data that vary both in their tempo (strength and rate of selection) and mode of evolution (Brownian or Ornstein-Uhlenbeck) and estimates of trait optima. We found that most traits are best fit by a generalized multipeak OU model, suggesting differing trait optima for viviparous vs. oviparous species. Additionally, rates (σ(2) ) of both pelvic girdle and forelimb trait evolution varied with parity; viviparous species had higher rates. Hindlimb traits, however, exhibited no difference in σ(2) between parity modes. In a functional context, our results suggest that the passage of shelled eggs constrains the morphology of the pelvic girdle, but we found no evidence of morphological constraint of the locomotor apparatus in viviparous species. Our results are consistent with recent lineage diversification analyses, leading to the conclusion that transitions to viviparity increase both lineage and morphological diversification. © 2014 European Society For Evolutionary Biology. Journal of Evolutionary Biology © 2014 European Society For Evolutionary Biology.

Calculating the spatio-temporal variability of bedrock exposure on seasonal hydrograph timescales as a prerequisite to modeling bedrock river evolution

NASA Astrophysics Data System (ADS)

Hurst, A. A.; Anderson, R. S.; Tucker, G. E.

2017-12-01

Erosion of bedrock river channels exerts significant control on landscape evolution because it communicates climatic and tectonic signals across a landscape by setting the lower erosional boundaries for hillslopes. Hillslope erosion delivers sediment to the channels, which then either store or transport the sediment. At times of high storage, access to the bedrock floor of the channel is limited, inhibiting bedrock erosion. This affects the timescale of channel response to imposed base-level lowering, which in turn affects hillslope erosion. Because occasional exposure of the bedrock bed is a minimum prerequisite for bedrock erosion, we seek to understand the evolution of sediment cover, or scour history, with sufficient resolution to answer when and where the bed is exposed. The scour history at a site is governed by grain size, bed and channel morphology, sediment concentration in the water, and seasonal flow conditions (hydrograph). The transient nature of bedrock exposure during high-flow events implies that short-term sediment cover dynamics are important for predicting long-term bedrock incision rates. Models of channel profile evolution, or of landscape evolution, generally ignore evolution of sediment cover on the hydrograph timescale. To develop insight into the necessary and sufficient conditions for bedrock exposure followed by reburial, we have developed a 1-D model of the evolution of alluvial cover thickness in a long channel profile in response to a seasonal hydrograph. This model tracks erosion, deposition, and the concentration of sediment in the water column separately, and generates histories of scour and fill over the course of the hydrograph. We compare the model's predictions with net-scour measurements in tributaries of the Grand Canyon and with scour-chain and accelerometer measurements in the Cedar River, Washington. By addressing alluvial scour on short timescales, we acknowledge the processes required to allow bedrock incision and landscape evolution over longer timescales.

Faceting, composition and crystal phase evolution in III-V antimonide nanowire heterostructures revealed by combining microscopy techniques.

PubMed

Xu, Tao; Dick, Kimberly A; Plissard, Sébastien; Nguyen, Thanh Hai; Makoudi, Younes; Berthe, Maxime; Nys, Jean-Philippe; Wallart, Xavier; Grandidier, Bruno; Caroff, Philippe

2012-03-09

III-V antimonide nanowires are among the most interesting semiconductors for transport physics, nanoelectronics and long-wavelength optoelectronic devices due to their optimal material properties. In order to investigate their complex crystal structure evolution, faceting and composition, we report a combined scanning electron microscopy (SEM), transmission electron microscopy (TEM), and scanning tunneling microscopy (STM) study of gold-nucleated ternary InAs/InAs(1-x)Sb(x) nanowire heterostructures grown by molecular beam epitaxy. SEM showed the general morphology and faceting, TEM revealed the internal crystal structure and ternary compositions, while STM was successfully applied to characterize the oxide-free nanowire sidewalls, in terms of nanofaceting morphology, atomic structure and surface composition. The complementary use of these techniques allows for correlation of the morphological and structural properties of the nanowires with the amount of Sb incorporated during growth. The addition of even a minute amount of Sb to InAs changes the crystal structure from perfect wurtzite to perfect zinc blende, via intermediate stacking fault and pseudo-periodic twinning regimes. Moreover, the addition of Sb during the axial growth of InAs/InAs(1-x)Sb(x) heterostructure nanowires causes a significant conformal lateral overgrowth on both segments, leading to the spontaneous formation of a core-shell structure, with an Sb-rich shell.

Defining a relationship between incident wave parameters and morphologic evolution of shoals on ebb tidal deltas using long term X-band radar observation from RIOS

NASA Astrophysics Data System (ADS)

Humberston, J. L.; McNinch, J.; Lippmann, T. C.

2016-12-01

The morphology of tidal inlet ebb-shoals varies dynamically over time, particularly in response to large wave events. Understanding which wave qualities most influence shoals' evolution would support advancements in sediment bypassing models as well as targeted maintenance dredging for hydrographic purposes. Unfortunately, shallow and rapidly changing bathymetry, turbid waters and ambiguous wave speeds resulting from multiple shoaling and de-shoaling areas limits many traditional surveying techniques from obtaining the spatial and temporal resolution necessary to effectively characterize shoal development. The Radar Inlet Observing System (RIOS) is a uniquely designed mobile X-band radar system that can be deployed to inlet environments and, using roof-mounted solar panels and an automatically triggered highly efficient diesel generator, run automated hourly collections and wirelessly stream data for up to several months at a time in nearly all weather and water conditions. During 2015 and early 2016, RIOS was deployed to St. Augustine Inlet, FL., New River Inlet, N.C., and Oregon Inlet, N.C. for periods of one to six months to allow for measureable shoal evolution. During deployments, ten minute collections (at 1 Hz) were conducted every hour and the data gridded to a 5m alongshore/cross-shore grid. Raw intensity returns were time-averaged and analyzed to define three metrics of shoal evolution: movement direction, movement velocity and inferred bathymetry. For each location and time period, wave frequencies, wave directions and significant wave heights were collected from the nearest wave-buoy. Time lapse videos of shoal positions were inspected and used in concert with cross-correlations values from each pair of shoal and wave parameters to determine the incident wave qualities most strongly relating to shoal evolution. Preliminary results suggest wave height, more than frequency, controls shoal movement. Wave direction and size collaboratively appear to direct the shoal's alongshore movement direction as well as general trends of morphologic evolution.

Sediment Dynamics in Shallow Tidal Landscapes: The Role of Wind Waves and Tidal Currents

NASA Astrophysics Data System (ADS)

Carniello, L.; D'Alpaos, A.

2014-12-01

A precise description of sediment dynamics (resuspension and re-distribution of sediments) is crucial when investigating the long term evolution of the different morphological entities characterizing tidal landscapes. It has been demonstrated that wind waves are the main responsible for sediment resuspension in shallow micro-tidal lagoons where tidal currents, which produce shear stresses large enough to carry sediments into suspension only within the main channels, are mainly responsible for sediment redistribution. A mathematical model has been developed to describe sediment entrainment, transport and deposition due to the combined effect of tidal currents and wind waves in shallow lagoons considering both cohesive and non-cohesive sediments. The model was calibrated and tested using both in situ point observations and turbidity maps obtained analyzing satellite images. Once calibrated the model can integrate the high temporal resolution of point observations with the high spatial resolution of remote sensing, overcoming the intrinsic limitation of these two types of observations. The model was applied to the specific test case of the Venice lagoon simulating an entire year (2005) which was shown to be a "representative" year for wind and tide characteristics. The time evolution of the computed total bottom shear stresses (BSS) and suspended sediment concentration (SSC) was analyzed on the basis of a "Peaks Over Threshold" method once a critical value for shear stress and turbidity were chosen. The analyses of the numerical results enabled us to demonstrate that resuspension events can be modeled as marked Poisson processes: interarrival time, intensity of peak excesses and duration being exponentially distributed random variable. The probability distributions of the interarrival time of overthreshold exceedances in both BSS and SSC as well as their intensity and duration can be used in long-term morphodynamic studies to generate synthetic series statistically equivalent to real sequences through which MonteCarlo realizations of relevant morphological evolutions can be computed.

Cosmogenic nuclides application on French Mediterranean shore platform development

NASA Astrophysics Data System (ADS)

Giuliano, Jérémy; Lebourg, Thomas; Godard, Vincent; Dewez, Thomas; Braucher, Régis; Bourlès, Didier; Marçot, Nathalie

2014-05-01

Rocky shorelines are among the most common elements of the world's littoral zone, and the potential effects of rising sea level on the ever increasing populations require a better understanding of their dynamics. The sinuosity and heterogeneity of the shoreline morphology at large and intermediate wavelengths (1-100 km) results from their constant evolution under the combined influence of marine and continental forcings. This macro-scale organization is the expression of the action of elementary erosion processes acting at shorter wavelengths (<1 km) which lead to the development of shore platforms by landward retreat of cliff edges. Modern analytical techniques (laser-scaning, micro-erosion meters, aerial surveys) constitute appropriate methods to identify and quantify processes of cliff retreat to 1-100 yrs time-scales. But over this time frame, shore platform development appears imperceptible. Precise knowledge of long-term erosion rates are needed to understand rocky shore evolution, and develop quantitative modeling of platform development. Rocky coasts constitute a Quaternary sea level evolution archive that is partly preserved and progressively destroyed. One major challenges is to determine the degree to which coast morphologies are (i) contemporary, (ii) or ancient features inherited, (iii) or partly inherited from Quaternary interglacial stages. In order to fill the lack of long term coast morphodynamic data, we use cosmogenic nuclides (36Cl) to study abrasion surfaces carved in carbonates lithologies along the French Mediterranean coast, in a microtidal environment (Côte Bleue, West of Marseille). 36Cl concentration heritage influences strongly our interpretations in terms of age and denudation of the surfaces. We propose to constrain heritage in sampling oldest relic marine surfaces at 10m of altitude, and along recent cliff scarp. 36Cl concentrations show that the lowest platforms near sea level are contemporary and the highest ones (8-14 m above sea level) marine surfaces are associated to MIS 5.5. A total of 50 samples allows to investigate the variations through time in relative sea level, climate and tectonic activity. Key words: cosmogenic, shore platform, rocky coast, Mediterranean, erosion rate.

The Role of Actin Cytoskeleton in Dendritic Spines in the Maintenance of Long-Term Memory.

PubMed

Basu, Sreetama; Lamprecht, Raphael

2018-01-01

Evidence indicates that long-term memory formation involves alterations in synaptic efficacy produced by modifications in neural transmission and morphology. However, it is not clear how such alterations induced by learning, that encode memory, are maintained over long period of time to preserve long-term memory. This is especially intriguing as the half-life of most of the proteins that underlie such changes is usually in the range of hours to days and these proteins may change their location over time. In this review we describe studies that indicate the involvement of dendritic spines in memory formation and its maintenance. These studies show that learning leads to changes in the number and morphology of spines. Disruption in spines morphology or manipulations that lead to alteration in their number after consolidation are associated with impairment in memory maintenance. We further ask how changes in dendritic spines morphology, induced by learning and reputed to encode memory, are maintained to preserve long-term memory. We propose a mechanism, based on studies described in the review, whereby the actin cytoskeleton and its regulatory proteins involved in the initial alteration in spine morphology induced by learning are also essential for spine structural stabilization that maintains long-term memory. In this model glutamate receptors and other synaptic receptors activation during learning leads to the creation of new actin cytoskeletal scaffold leading to changes in spines morphology and memory formation. This new actin cytoskeletal scaffold is preserved beyond actin and its regulatory proteins turnover and dynamics by active stabilization of the level and activity of actin regulatory proteins within these memory spines.

An idealised study for the long term evolution of crescentic bars

NASA Astrophysics Data System (ADS)

Chen, W. L.; Dodd, N.; Tiessen, M. C. H.; Calvete, D.

2018-01-01

An idealised study that identifies the mechanisms in the long term evolution of crescentic bar systems in nature is presented. Growth to finite amplitude (i.e., equilibration, sometimes referred to as saturation) and higher harmonic interaction are hypothesised to be the leading nonlinear effects in long-term evolution of these systems. These nonlinear effects are added to a linear stability model and used to predict crescentic bar development along a beach in Duck, North Carolina (USA) over a 2-month period. The equilibration prolongs the development of bed patterns, thus allowing the long term evolution. Higher harmonic interaction enables the amplitude to be transferred from longer to shorter lengthscales, which leads to the dominance of shorter lengthscales in latter post-storm stages, as observed at Duck. The comparison with observations indicates the importance of higher harmonic interaction in the development of nearshore crescentic bar systems in nature. Additionally, it is concluded that these nonlinear effects should be included in models simulating the development of different bed patterns, and that this points a way forward for long-term morphodynamical modelling in general.

Subgrid Modeling Geomorphological and Ecological Processes in Salt Marsh Evolution

NASA Astrophysics Data System (ADS)

Shi, F.; Kirby, J. T., Jr.; Wu, G.; Abdolali, A.; Deb, M.

2016-12-01

Numerical modeling a long-term evolution of salt marshes is challenging because it requires an extensive use of computational resources. Due to the presence of narrow tidal creeks, variations of salt marsh topography can be significant over spatial length scales on the order of a meter. With growing availability of high-resolution bathymetry measurements, like LiDAR-derived DEM data, it is increasingly desirable to run a high-resolution model in a large domain and for a long period of time to get trends of sedimentation patterns, morphological change and marsh evolution. However, high spatial-resolution poses a big challenge in both computational time and memory storage, when simulating a salt marsh with dimensions of up to O(100 km^2) with a small time step. In this study, we have developed a so-called Pre-storage, Sub-grid Model (PSM, Wu et al., 2015) for simulating flooding and draining processes in salt marshes. The simulation of Brokenbridge salt marsh, Delaware, shows that, with the combination of the sub-grid model and the pre-storage method, over 2 orders of magnitude computational speed-up can be achieved with minimal loss of model accuracy. We recently extended PSM to include a sediment transport component and models for biomass growth and sedimentation in the sub-grid model framework. The sediment transport model is formulated based on a newly derived sub-grid sediment concentration equation following Defina's (2000) area-averaging procedure. Suspended sediment transport is modeled by the advection-diffusion equation in the coarse grid level, but the local erosion and sedimentation rates are integrated over the sub-grid level. The morphological model is based on the existing morphological model in NearCoM (Shi et al., 2013), extended to include organic production from the biomass model. The vegetation biomass is predicted by a simple logistic equation model proposed by Marani et al. (2010). The biomass component is loosely coupled with hydrodynamic and sedimentation models owing to the different time scales of the physical and ecological processes. The coupled model is being applied to Delaware marsh evolution in response to rising sea level and changing sediment supplies.

Assessing Multivariate Constraints to Evolution across Ten Long-Term Avian Studies

PubMed Central

Teplitsky, Celine; Tarka, Maja; Møller, Anders P.; Nakagawa, Shinichi; Balbontín, Javier; Burke, Terry A.; Doutrelant, Claire; Gregoire, Arnaud; Hansson, Bengt; Hasselquist, Dennis; Gustafsson, Lars; de Lope, Florentino; Marzal, Alfonso; Mills, James A.; Wheelwright, Nathaniel T.; Yarrall, John W.; Charmantier, Anne

2014-01-01

Background In a rapidly changing world, it is of fundamental importance to understand processes constraining or facilitating adaptation through microevolution. As different traits of an organism covary, genetic correlations are expected to affect evolutionary trajectories. However, only limited empirical data are available. Methodology/Principal Findings We investigate the extent to which multivariate constraints affect the rate of adaptation, focusing on four morphological traits often shown to harbour large amounts of genetic variance and considered to be subject to limited evolutionary constraints. Our data set includes unique long-term data for seven bird species and a total of 10 populations. We estimate population-specific matrices of genetic correlations and multivariate selection coefficients to predict evolutionary responses to selection. Using Bayesian methods that facilitate the propagation of errors in estimates, we compare (1) the rate of adaptation based on predicted response to selection when including genetic correlations with predictions from models where these genetic correlations were set to zero and (2) the multivariate evolvability in the direction of current selection to the average evolvability in random directions of the phenotypic space. We show that genetic correlations on average decrease the predicted rate of adaptation by 28%. Multivariate evolvability in the direction of current selection was systematically lower than average evolvability in random directions of space. These significant reductions in the rate of adaptation and reduced evolvability were due to a general nonalignment of selection and genetic variance, notably orthogonality of directional selection with the size axis along which most (60%) of the genetic variance is found. Conclusions These results suggest that genetic correlations can impose significant constraints on the evolution of avian morphology in wild populations. This could have important impacts on evolutionary dynamics and hence population persistence in the face of rapid environmental change. PMID:24608111

Effect of Ni content on the morphological evolution of Ni-YSZ solid oxide fuel cell electrodes

DOE PAGES

Chen-Wiegart, Yu-chen Karen; Kennouche, David; Scott Cronin, J.; ...

2016-02-25

The coarsening of Ni in Ni–yttria-stabilized zirconia (YSZ) anodes is a potential cause of long term solid oxide fuel cells (SOFC) performance degradation. The specifics of the Ni-YSZ structure—including Ni/YSZ ratio, porosity, and particle size distributions—are normally selected to minimize anode polarization resistance, but they also impact long-term stability. A better understanding of how these factors influence long-term stability is important for designing more durable anodes. The effect of structural details, e.g., Ni-YSZ ratio, on Ni coarsening has not been quantified. Furthermore, prior measurements have been done by comparing evolved structures with control samples, such that sample-to-sample variations introduce errors.more » Here in this paper, we report a four dimensional (three spatial dimensions and time) study of Ni coarsening in Ni-YSZ anode functional layers with different Ni/YSZ ratios, using synchrotron x-ray nano-tomography. The continuous structural evolution was observed and analyzed at sub-100 nm resolution. It is shown quantitatively that increasing the Ni/YSZ ratio increases the Ni coarsening rate. This is due to both increased pore volume and a decrease in the YSZ volume fraction, such that there is more free volume and a less obtrusive YSZ network, both of which allow greater Ni coarsening. The results are shown to be in good agreement with a power-law coarsening model. In conclusion, the finding is critical for informing the design of SOFC electrode microstructures that limit coarsening and performance degradation.« less

Effect of Ni content on the morphological evolution of Ni-YSZ solid oxide fuel cell electrodes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chen-Wiegart, Yu-chen Karen; Kennouche, David; Scott Cronin, J.

The coarsening of Ni in Ni–yttria-stabilized zirconia (YSZ) anodes is a potential cause of long term solid oxide fuel cells (SOFC) performance degradation. The specifics of the Ni-YSZ structure—including Ni/YSZ ratio, porosity, and particle size distributions—are normally selected to minimize anode polarization resistance, but they also impact long-term stability. A better understanding of how these factors influence long-term stability is important for designing more durable anodes. The effect of structural details, e.g., Ni-YSZ ratio, on Ni coarsening has not been quantified. Furthermore, prior measurements have been done by comparing evolved structures with control samples, such that sample-to-sample variations introduce errors.more » Here in this paper, we report a four dimensional (three spatial dimensions and time) study of Ni coarsening in Ni-YSZ anode functional layers with different Ni/YSZ ratios, using synchrotron x-ray nano-tomography. The continuous structural evolution was observed and analyzed at sub-100 nm resolution. It is shown quantitatively that increasing the Ni/YSZ ratio increases the Ni coarsening rate. This is due to both increased pore volume and a decrease in the YSZ volume fraction, such that there is more free volume and a less obtrusive YSZ network, both of which allow greater Ni coarsening. The results are shown to be in good agreement with a power-law coarsening model. In conclusion, the finding is critical for informing the design of SOFC electrode microstructures that limit coarsening and performance degradation.« less

Quaternary geomorphology and modern coastal development in response to an inherent geologic framework: An example from Charleston, South Carolina

USGS Publications Warehouse

Harris, M.S.; Gayes, P.T.; Kindinger, J.L.; Flocks, J.G.; Krantz, D.E.; Donovan, P.

2005-01-01

Coastal landscapes evolve over wide-ranging spatial and temporal scales in response to physical and biological pro-cesses that interact with a wide range of variables. To develop better predictive models for these dynamic areas, we must understand the influence of these variables on coastal morphologies and ultimately how they influence coastal processes. This study defines the influence of geologic framework variability on a classic mixed-energy coastline, and establishes four categorical scales of spatial and temporal influence on the coastal system. The near-surface, geologic framework was delineated using high-resolution seismic profiles, shallow vibracores, detailed geomorphic maps, historical shorelines, aerial photographs, and existing studies, and compared to the long- and short-term development of two coastal compartments near Charleston, South Carolina. Although it is clear that the imprint of a mixed-energy tidal and wave signal (basin-scale) dictates formation of drumstick barriers and that immediate responses to wave climate are dramatic, island size, position, and longer-term dynamics are influenced by a series of inherent, complex near-surface stratigraphic geometries. Major near-surface Tertiary geometries influence inlet placement and drainage development (island-scale) through multiple interglacial cycles and overall channel morphology (local-scale). During the modern marine transgression, the halo of ebb-tidal deltas greatly influence inlet region dynamics, while truncated beach ridges and exposed, differentially erodable Cenozoic deposits in the active system influence historical shoreline dynamics and active shoreface morphologies (blockscale). This study concludes that the mixed-energy imprint of wave and tide theories dominates general coastal morphology, but that underlying stratigraphic influences on the coast provide site-specific, long-standing imprints on coastal evolution.

Different evolutionary pathways underlie the morphology of wrist bones in hominoids

PubMed Central

2013-01-01

Background The hominoid wrist has been a focus of numerous morphological analyses that aim to better understand long-standing questions about the evolution of human and hominoid hand use. However, these same analyses also suggest various scenarios of complex and mosaic patterns of morphological evolution within the wrist and potentially multiple instances of homoplasy that would benefit from require formal analysis within a phylogenetic context. We identify morphological features that principally characterize primate – and, in particular, hominoid (apes, including humans) - wrist evolution and reveal the rate, process and evolutionary timing of patterns of morphological change on individual branches of the primate tree of life. Linear morphological variables of five wrist bones – the scaphoid, lunate, triquetrum, capitate and hamate – are analyzed in a diverse sample of extant hominoids (12 species, 332 specimens), Old World (8 species, 43 specimens) and New World (4 species, 26 specimens) monkeys, fossil Miocene apes (8 species, 20 specimens) and Plio-Pleistocene hominins (8 species, 18 specimens). Result Results reveal a combination of parallel and synapomorphic morphology within haplorrhines, and especially within hominoids, across individual wrist bones. Similar morphology of some wrist bones reflects locomotor behaviour shared between clades (scaphoid, triquetrum and capitate) while others (lunate and hamate) indicate clade-specific synapomorphic morphology. Overall, hominoids show increased variation in wrist bone morphology compared with other primate clades, supporting previous analyses, and demonstrate several occurrences of parallel evolution, particularly between orangutans and hylobatids, and among hominines (extant African apes, humans and fossil hominins). Conclusions Our analyses indicate that different evolutionary processes can underlie the evolution of a single anatomical unit (the wrist) to produce diversity in functional and morphological adaptations across individual wrist bones. These results exemplify a degree of evolutionary and functional independence across different wrist bones, the potential evolvability of skeletal morphology, and help to contextualize the postcranial mosaicism observed in the hominin fossil record. PMID:24148262

A Mechanobiological model for damage-induced growth in arterial tissue with application to in-stent restenosis

NASA Astrophysics Data System (ADS)

Fereidoonnezhad, B.; Naghdabadi, R.; Sohrabpour, S.; Holzapfel, G. A.

In-stent restenosis (ISR) is one of the main drawbacks of stent implementation which limits the long-term success of the procedure. Morphological changes occurring within the arterial wall due to stent-induced mechanical injury are a major cause for activation of vascular smooth muscle cells (VSMCs), and the subsequent development of ISR. Considering the theory of volumetric mass growth and adopting a multiplicative decomposition of the deformation gradient into an elastic part and a growth part, we present a mechanobiological model for ISR. An evolution equation is developed for mass growth of the neointima, in which the activation of VSMCs due to stent-induced damage (injury) and the proliferation rate of the activated cells are considered. By introducing the mass evolution into the mass balance equation, we obtain the evolution of the growth tensor over time. The model is implemented in a finite element code and the procedure of angioplasty is simulated, whereby the features of the proposed growth model are illustrated.

Polyallylamine-Rh nanosheet nanoassemblies-carbon nanotubes organic-inorganic nanohybrids: A electrocatalyst superior to Pt for the hydrogen evolution reaction

NASA Astrophysics Data System (ADS)

Bai, Juan; Xing, Shi-Hui; Zhu, Ying-Ying; Jiang, Jia-Xing; Zeng, Jing-Hui; Chen, Yu

2018-05-01

Rationally tailoring the surface/interface structures of noble metal nanostructures emerges as a highly efficient method for improving their electrocatalytic activity, selectivity, and long-term stability. Recently, hydrogen evolution reaction is attracting more and more attention due to the energy crisis and environment pollution. Herein, we successfully synthesize polyallylamine-functionalized rhodium nanosheet nanoassemblies-carbon nanotube nanohybrids via a facile one-pot hydrothermal method. Three-dimensionally branched rhodium nanosheet nanoassemblies are consisted of two dimensionally atomically thick ultrathin rhodium nanosheets. The as-prepared polyallylamine-functionalized rhodium nanosheet nanoassemblies-carbon nanotube nanohybrids show the excellent electrocatalytic activity for the hydrogen evolution reaction in acidic media, with a low onset reduction potential of -1 mV, a small overpotential of 5 mV at 10 mA cm-2, which is much superior to commercial platinum nanocrystals. Two dimensionally ultrathin morphology of rhodium nanosheet, particular rhodium-polyallylamine interface, and three-dimensionally networks induced by carbon nanotube are the key factors for the excellent hydrogen evolution reaction activity in acidic media.

MOF-Derived Ultrathin Cobalt Phosphide Nanosheets as Efficient Bifunctional Hydrogen Evolution Reaction and Oxygen Evolution Reaction Electrocatalysts

PubMed Central

Li, Hong; Ke, Fei; Zhu, Junfa

2018-01-01

The development of a highly efficient and stable bifunctional electrocatalyst for water splitting is still a challenging issue in obtaining clean and sustainable chemical fuels. Herein, a novel bifunctional catalyst consisting of 2D transition-metal phosphide nanosheets with abundant reactive sites templated by Co-centered metal−organic framework nanosheets, denoted as CoP-NS/C, has been developed through a facile one-step low-temperature phosphidation process. The as-prepared CoP-NS/C has large specific surface area and ultrathin nanosheets morphology providing rich catalytic active sites. It shows excellent electrocatalytic performances for hydrogen evolution reaction (HER) and oxygen evolution reaction (OER) in acidic and alkaline media, with the Tafel slopes of 59 and 64 mV/dec and a current density of 10 mA/cm2 at the overpotentials of 140 and 292 mV, respectively, which are remarkably superior to those of CoP/C, CoP particles, and comparable to those of commercial noble-metal catalysts. In addition, the CoP-NS/C also shows good durability after a long-term test. PMID:29414838

Complementing data-driven and physically-based approaches for predictive morphologic modeling: Results and implication from the Red River Basin, Vietnam

NASA Astrophysics Data System (ADS)

Schmitt, R. J.; Bernardi, D.; Bizzi, S.; Castelletti, A.; Soncini-Sessa, R.

2013-12-01

During the last 30 years, the delta of the Red River (Song Hong) in northern Vietnam experienced grave morphologic degradation processes which severely impact economic activities and endanger region-wide livelihoods. Rapidly progressing river bed incision, for example, threatens the irrigation of the delta's paddy rice crops which constitute 20% of Vietnam's annual rice production. Morphologic alteration is related to a drastically changed sediment balance due to major upstream impoundments, sediment mining and land use changes, further aggravated by changing hydro-meteorological conditions. Despite the severe impacts, river morphology was so far not included into the current efforts to optimize basin wide water resource planning for a lack of suitable, not overly resource demanding modeling strategies. This paper assesses the suitability of data-driven models to provide insights into complex hydromorphologic processes and to complement and enrich physically-based modeling strategies. Hence, to identify key drivers of morphological change while evaluating impacts of future socio-economic, management and climate scenarios on river morphology and the resulting effects on key social needs (e.g. water supply, energy production and flood mitigation). Most relevant drivers and time-scales for the considered processes (e.g. incision) - from days to decades - were identified from hydrologic and sedimentologic time-series using a feature ranking algorithm based on random trees. The feature ranking pointed out bimodal response characteristics, with important contributions of long-to-medium (5 - 15 yrs.) and rather short (10d - 6 months) timescales. An artificial neural network (ANN), built from identified variables, subsequently quantified in detail how these temporal components control long term trends, inter-seasonal fluctuations and day to day variations in morphologic processes. Whereas the general trajectory of incision relates, for example, to the overall regional sediment balance over an extended time-horizon (>15 yrs.), upstream impoundments induce a much more rapid adaptation (1-5 yrs.). The applicability of the ANN as predictive model was evaluated by comparing its results with a traditional, 1D bed evolution model. The next decade's morphologic evolution under an ensemble of scenarios, considering uncertainties in climatic change, socio-economic development and upstream reservoir release policies was derived from both models. The ANN greatly outperforms the 1D model in computational requirements and presents a powerful tool for effective assessment of scenario ensembles and quantification of uncertainties in river hydro-morphology. In contrast, the processes-based model provides detailed, spatio-temporally distributed outputs and validation of the ANN's results for selected scenarios. We conclude that the application of both approaches constitutes a mutually enriching strategy for modern, quantitative catchment management. We argue that physically based modeling can have specific spatial and temporal constrains (e.g. in terms of identifying key drivers and associated temporal and spatial domains) and that linking physically-based with data-driven approaches largely increases the potential for including hydro-morphology into basin-scale water resource management.

Long-Term Interactions of Streamflow Generation and River Basin Morphology

NASA Astrophysics Data System (ADS)

Huang, X.; Niemann, J.

2005-12-01

It is well known that the spatial patterns and dynamics of streamflow generation processes depend on river basin topography, but the impact of streamflow generation processes on the long-term evolution of river basins has not drawn as much attention. Fluvial erosion processes are driven by streamflow, which can be produced by Horton runoff, Dunne runoff, and groundwater discharge. In this analysis, we hypothesize that the dominant streamflow generation process in a basin affects the spatial patterns of fluvial erosion and that the nature of these patterns changes for storm events with differing return periods. Furthermore, we hypothesize that differences in the erosion patterns modify the topography over the long term in a way that promotes and/or inhibits the other streamflow generation mechanisms. In order to test these hypotheses, a detailed hydrologic model is imbedded into an existing landscape evolution model. Precipitation events are simulated with a Poisson process and have random intensities and durations. The precipitation is partitioned between Horton runoff and infiltration to groundwater using a specified infiltration capacity. Groundwater flow is described by a two-dimensional Dupuit equation for a homogeneous, isotropic, unconfined aquifer with an irregular underlying impervious layer. Dunne runoff occurs when precipitation falls on locations where the water table reaches the land surface. The combined hydrologic/geomorphic model is applied to the WE-38 basin, an experimental watershed in Pennsylvania that has substantial available hydrologic data. First, the hydrologic model is calibrated to reproduce the observed streamflow for 1990 using the observed rainfall as the input. Then, the relative roles of Horton runoff, Dunne runoff, and groundwater discharge are controlled by varying the infiltration capacity of the soil. For each infiltration capacity, the hydrologic and geomorphic behavior of the current topography is analyzed and the long-term evolution of the basin is simulated. The results indicate that the topography can be divided into three types of locations (unsaturated, saturated, and intermittently saturated) which control the patterns of streamflow generation for events with different return periods. The results also indicate that the streamflow generation processes can produce different geomorphic effective events at upstream and downstream locations. The model also suggests that a topography dominated by groundwater discharge evolves over a long period of time to a shape that tends to inhibit the development of saturated areas and Dunne runoff.

Identifying heterogeneity in rates of morphological evolution: discrete character change in the evolution of lungfish (Sarcopterygii; Dipnoi).

PubMed

Lloyd, Graeme T; Wang, Steve C; Brusatte, Stephen L

2012-02-01

Quantifying rates of morphological evolution is important in many macroevolutionary studies, and critical when assessing possible adaptive radiations and episodes of punctuated equilibrium in the fossil record. However, studies of morphological rates of change have lagged behind those on taxonomic diversification, and most authors have focused on continuous characters and quantifying patterns of morphological rates over time. Here, we provide a phylogenetic approach, using discrete characters and three statistical tests to determine points on a cladogram (branches or entire clades) that are characterized by significantly high or low rates of change. These methods include a randomization approach that identifies branches with significantly high rates and likelihood ratio tests that pinpoint either branches or clades that have significantly higher or lower rates than the pooled rate of the remainder of the tree. As a test case for these methods, we analyze a discrete character dataset of lungfish, which have long been regarded as "living fossils" due to an apparent slowdown in rates since the Devonian. We find that morphological rates are highly heterogeneous across the phylogeny and recover a general pattern of decreasing rates along the phylogenetic backbone toward living taxa, from the Devonian until the present. Compared with previous work, we are able to report a more nuanced picture of lungfish evolution using these new methods. © 2011 The Author(s). Evolution© 2011 The Society for the Study of Evolution.

Stratigraphy and morphology of the barrier platform of Breton Island, Louisiana: deltaic, marine and human influences

USGS Publications Warehouse

Flocks, James G.; Kindinger, Jack G.; Miselis, Jennifer L.; Locker, Stanley D.

2015-01-01

Breton Island, located at the southern end of the Chandeleur Islands, Louisiana, is part of the Breton National Wildlife Refuge (NWR). Breton NWR is recognized as an important bird habitat and is host to one of Louisiana's largest historical brown pelican nesting colonies. Loss of island area through relative sea-level rise, storm impact, and impeded and diminishing sediment supply is reducing the available habitat, and restoration is necessary if the island is to remain emergent. Physical investigation of the Breton Island platform has provided new insight into the geologic framework. The data reveal a complex system that is undergoing both long-term and short-term change. Results of the study help to resolve uncertainties in island evolution and will assist in effective restoration of the island.

Social evolution and genetic interactions in the short and long term.

PubMed

Van Cleve, Jeremy

2015-08-01

The evolution of social traits remains one of the most fascinating and feisty topics in evolutionary biology even after half a century of theoretical research. W.D. Hamilton shaped much of the field initially with his 1964 papers that laid out the foundation for understanding the effect of genetic relatedness on the evolution of social behavior. Early theoretical investigations revealed two critical assumptions required for Hamilton's rule to hold in dynamical models: weak selection and additive genetic interactions. However, only recently have analytical approaches from population genetics and evolutionary game theory developed sufficiently so that social evolution can be studied under the joint action of selection, mutation, and genetic drift. We review how these approaches suggest two timescales for evolution under weak mutation: (i) a short-term timescale where evolution occurs between a finite set of alleles, and (ii) a long-term timescale where a continuum of alleles are possible and populations evolve continuously from one monomorphic trait to another. We show how Hamilton's rule emerges from the short-term analysis under additivity and how non-additive genetic interactions can be accounted for more generally. This short-term approach reproduces, synthesizes, and generalizes many previous results including the one-third law from evolutionary game theory and risk dominance from economic game theory. Using the long-term approach, we illustrate how trait evolution can be described with a diffusion equation that is a stochastic analogue of the canonical equation of adaptive dynamics. Peaks in the stationary distribution of the diffusion capture classic notions of convergence stability from evolutionary game theory and generally depend on the additive genetic interactions inherent in Hamilton's rule. Surprisingly, the peaks of the long-term stationary distribution can predict the effects of simple kinds of non-additive interactions. Additionally, the peaks capture both weak and strong effects of social payoffs in a manner difficult to replicate with the short-term approach. Together, the results from the short and long-term approaches suggest both how Hamilton's insight may be robust in unexpected ways and how current analytical approaches can expand our understanding of social evolution far beyond Hamilton's original work. Copyright © 2015 Elsevier Inc. All rights reserved.

Astrobiology: exploring the origins, evolution, and distribution of life in the Universe.

PubMed

Des Marais, D J; Walter, M R

1999-01-01

The search for the origins of life and its presence beyond Earth is strengthened by new technology and by evidence that life tolerates extreme conditions and that planets are widespread. Astrobiologists learn how planets develop and maintain habitable conditions. They combine biological and information sciences to decipher the origins of life. They examine how biota, particularly microorganisms, evolve, at scales from the molecular to the biosphere level, including interactions with long-term planetary changes. Astrobiologists learn how to recognize the morphological, chemical, and spectroscopic signatures of life in order to explore both extraterrestrial samples and electromagnetic spectra reflected from extrasolar planets.

Astrobiology: exploring the origins, evolution, and distribution of life in the Universe

NASA Technical Reports Server (NTRS)

Des Marais, D. J.; Walter, M. R.

1999-01-01

The search for the origins of life and its presence beyond Earth is strengthened by new technology and by evidence that life tolerates extreme conditions and that planets are widespread. Astrobiologists learn how planets develop and maintain habitable conditions. They combine biological and information sciences to decipher the origins of life. They examine how biota, particularly microorganisms, evolve, at scales from the molecular to the biosphere level, including interactions with long-term planetary changes. Astrobiologists learn how to recognize the morphological, chemical, and spectroscopic signatures of life in order to explore both extraterrestrial samples and electromagnetic spectra reflected from extrasolar planets.

Correlated evolution of body and fin morphology in the cichlid fishes.

PubMed

Feilich, Kara L

2016-10-01

Body and fin shapes are chief determinants of swimming performance in fishes. Different configurations of body and fin shapes can suit different locomotor specializations. The success of any configuration is dependent upon the hydrodynamic interactions between body and fins. Despite the importance of body-fin interactions for swimming, there are few data indicating whether body and fin configurations evolve in concert, or whether these structures vary independently. The cichlid fishes are a diverse family whose well-studied phylogenetic relationships make them ideal for the study of macroevolution of ecomorphology. This study measured body, and caudal and median fin morphology from radiographs of 131 cichlid genera, using morphometrics and phylogenetic comparative methods to determine whether these traits exhibit correlated evolution. Partial least squares canonical analysis revealed that body, caudal fin, dorsal fin, and anal fin shapes all exhibited strong correlated evolution consistent with locomotor ecomorphology. Major patterns included the evolution of deep body profiles with long fins, suggestive of maneuvering specialization; and the evolution of narrow, elongate caudal peduncles with concave tails, a combination that characterizes economical cruisers. These results demonstrate that body shape evolution does not occur independently of other traits, but among a suite of other morphological changes that augment locomotor specialization. © 2016 The Author(s). Evolution © 2016 The Society for the Study of Evolution.

Early animal evolution: emerging views from comparative biology and geology

NASA Technical Reports Server (NTRS)

Knoll, A. H.; Carroll, S. B.

1999-01-01

The Cambrian appearance of fossils representing diverse phyla has long inspired hypotheses about possible genetic or environmental catalysts of early animal evolution. Only recently, however, have data begun to emerge that can resolve the sequence of genetic and morphological innovations, environmental events, and ecological interactions that collectively shaped Cambrian evolution. Assembly of the modern genetic tool kit for development and the initial divergence of major animal clades occurred during the Proterozoic Eon. Crown group morphologies diversified in the Cambrian through changes in the genetic regulatory networks that organize animal ontogeny. Cambrian radiation may have been triggered by environmental perturbation near the Proterozoic-Cambrian boundary and subsequently amplified by ecological interactions within reorganized ecosystems.

Stable aqueous based Cu nanoparticle ink for printing well-defined highly conductive features on a plastic substrate.

PubMed

Jeong, Sunho; Song, Hae Chun; Lee, Won Woo; Lee, Sun Sook; Choi, Youngmin; Son, Wonil; Kim, Eui Duk; Paik, Choon Hoon; Oh, Seok Heon; Ryu, Beyong-Hwan

2011-03-15

With the aim of inkjet printing highly conductive and well-defined Cu features on plastic substrates, aqueous based Cu ink is prepared for the first time using water-soluble Cu nanoparticles with a very thin surface oxide layer. Owing to the specific properties, high surface tension and low boiling point, of water, the aqueous based Cu ink endows a variety of advantages over conventional Cu inks based on organic solvents in printing narrow conductive patterns without irregular morphologies. It is demonstrated how the design of aqueous based ink affects the basic properties of printed conductive features such as surface morphology, microstructure, conductivity, and line width. The long-term stability of aqueous based Cu ink against oxidation is analyzed through an X-ray photoelectron spectroscopy (XPS) based investigation on the evolution of the surface oxide layer in the aqueous based ink.

The structure of anchovy outer retinae (Engraulididae, Clupeiformes) - a comparative light- and electron-microscopic study using museum-stored material.

PubMed

Hess, Martin; Melzer, Roland R; Eser, Roland; Smola, Ulrich

2006-11-01

The outer retinal architecture of Engraulididae is uncommon among vertebrates. In some anchovies, e.g., Anchoa, two cone types are arranged alternating in long photoreceptor chains, i.e., polycones. The cones have radially oriented outer segment lamellae in close contact with a complex guanine tapetum, most probably subserving polarization contrast vision. To clarify the distribution of the aberrant polycone architecture within the Engraulididae and to provide indications about polycone evolution, the outer retina morphology of 16 clupeoid species was investigated by light and electron microscopy, predominantly using museum-stored material. The outgroup representatives of four clupeid subfamilies (Clupeonella cultriventris, Dorosoma cepedianum, Ethmalosa fimbriata, Pellonula leonensis) show a row pattern of double cones, partially with single cones at defined positions and a pigment epithelium with lobopodial protrusions containing melanin. The pristigasterid Ilisha africana has double rows of single cones lying between linear curtains of pigment epithelium processes filled with minute crystallites and melanin concentrated near their vitreal tips. Within the Engraulididae, two main architectures are found: Coilia nasus and Thryssa setirostris have linear multiple cones or polycones separated by long pigment epithelium barriers containing tapetal crystallites and melanin in the tips (also found in Setipinna taty), whereas Anchoviella alleni, Encrasicholina heteroloba, Engraulis encrasicolus, Engraulis mordax, Lycengraulis batesii, and Stolephorus indicus exhibit the typical polycone architecture. Cetengraulis mysticetus and Lycothrissa crocodilus show cone patterns and pigment epithelium morphology differing from the other anchovy species. The sets of characters are compared, corroborated with the previous knowledge on clupeoid retinae and discussed in terms of functional morphology and visual ecology. A scenario on polycone evolution is developed that may serve as an aid for the reconstruction of engraulidid phylogeny. Furthermore, this study demonstrates the suitability of museum material for morphological studies, even at the electron microscopic level. Copyright 2006 Wiley-Liss, Inc.

Morphology and Evolution of Sublimation Pits on Pluto

NASA Astrophysics Data System (ADS)

Abu-Hashmeh, N.; Conrad, J. W.; Nimmo, F.; Moore, J. M.; Stern, A.; Olkin, C.; Weaver, H. A., Jr.; Ennico Smith, K.; Young, L. A.

2017-12-01

Pluto's Sputnik Planitia region hosts a geologically young surface of nitrogen ice that exhibits striking pitted terrain (Moore et al., Science 351, 2016). These pits are most likely formed by sublimation due to incident sunlight, similar to the southern polar cap of Mars (Byrne and Ingersoll, Science 299, 2003); however, their evolution over time has resulted in unique morphological characteristics. Motivated by this, we used the high-resolution mosaic strips captured by New Horizons' Long Range Reconnaissance Imager (LORRI) to map sublimation pits in the southernmost region of Sputnik Planitia. Statistical data shows pit orientations appearing North-South dominant; their morphology also indicates extensional evolution along the major axis caused by further sublimation and contact-coalescence processes. Qualitative analysis of the region yielded indications of an evolutionary path for individual pits that coalesce into each other and exhibit an elongated end-stage. Additionally, densely-pitted regions generally appear to correlate with regions containing longer pits, implying that coalescence may be an important process for elongation. We also model the evolution geometry through competing effects of diffusion (viscous relaxation) and retreat (sublimation) (Buhler and Ingersoll, LPSC Abstract #1746, 2017). The model demonstrates single-pit and coalescing-pit evolutions that influence overall length, as well as a potential ability for the pit center to move in space while the pit morphology evolves.

Long-term rocky coast erosion: the influence of structural pattern and lithological context, as evidenced in the chalk (NW Normandy) and granitic (SW Brittany) rocks, NW France

NASA Astrophysics Data System (ADS)

Duperret, Anne; Raimbault, Céline; Duguet, Timothée; Le Gall, Bernard; Costa, Stéphane; Vandycke, Sara

2017-04-01

During the EC2CO/DRIL/CROCODYL project, high-resolution land-sea DEM have been produced in NW Normandy and SW Brittany rocky coastal zone, using high-resolution bathymetry from shallow-water cruises CROCOLIT-1,-2,-3 (Duperret, 2013), SPLASHALIOT-3 (Maillet, 2014), THAPENFROM-1 (Duperret, 2015) and aerial topographic LiDAR data from the Litto3D project. Two study sites were selected to map detailed geomorphology of shore platforms in order to better understand rock coast evolution processes through time and long-term rates of rocky coastal erosion versus geological context. The eastern English Channel is made of coastal chalk cliffs that currently eroding with fast mean rates of the order of a few dm/year. In Normandy coast (NW France), this results to the generation of roughly linear coastal segments of about 20-30km long each. On coastal segments only made of Upper Cretaceous Chalk, erosion occurs by present-day sudden and repeated vertical failures and cliff collapses. Cliff collapse process is shaping vertical chalk cliffs in association with resulting roughly flat shore platforms. Even if shore platforms width are short and homogeneous (a few hundred meters in width), the detailed morphology observed on high-resolution bathymetry evidenced two main submarine geomorphological types. One is linear and regular and associated with linear coastal sections. This corresponds to homogeneous Chalk Formation and the lack of large-scale tectonic features. Coastal sections with chalk lithology variations, local folding, large-scale fractures transverse-oriented to the coastline and onshore valleys incision evidence chaotic shore platforms morphologies. They conduct to variations in coastline orientation and to meter-scale shoreline indentations The southwestern part of Brittany is made of low-lying granitic headland and indented bay cut into meta/granitic rocks. Erosion rates are poorly known, due to slow coastal evolutions through contemporary times. Land-Sea DEM evidence similar onshore and offshore morphologies, with flat and wide superposed plains, limited each one by 10m high scarps. In this case, shore platform extension reaches a few km in width and appears as superposed paleo-shore platforms generated since Pleistocene (Raimbault et al, in press). The erosive process is thus link to a long-term alteration of granitic rocks since Cenozoic, mainly clear and etched during recent past high sea levels. Coastal areas with large bays appear locally to be guided by large-scale Cenozoic fractures. In some places, km-scale fractures favor a spatial concentration of erosion. They are shaping coastline orientation and shore platform ending at km-scale.

Rates of molecular evolution in tree ferns are associated with body size, environmental temperature, and biological productivity.

PubMed

Barrera-Redondo, Josué; Ramírez-Barahona, Santiago; Eguiarte, Luis E

2018-05-01

Variation in rates of molecular evolution (heterotachy) is a common phenomenon among plants. Although multiple theoretical models have been proposed, fundamental questions remain regarding the combined effects of ecological and morphological traits on rate heterogeneity. Here, we used tree ferns to explore the correlation between rates of molecular evolution in chloroplast DNA sequences and several morphological and environmental factors within a Bayesian framework. We revealed direct and indirect effects of body size, biological productivity, and temperature on substitution rates, where smaller tree ferns living in warmer and less productive environments tend to have faster rates of molecular evolution. In addition, we found that variation in the ratio of nonsynonymous to synonymous substitution rates (dN/dS) in the chloroplast rbcL gene was significantly correlated with ecological and morphological variables. Heterotachy in tree ferns may be influenced by effective population size associated with variation in body size and productivity. Macroevolutionary hypotheses should go beyond explaining heterotachy in terms of mutation rates and instead, should integrate population-level factors to better understand the processes affecting the tempo of evolution at the molecular level. © 2018 The Author(s). Evolution © 2018 The Society for the Study of Evolution.

Numerical Simulations of Supernova Remnant Evolution in a Cloudy Interstellar Medium

DOE Office of Scientific and Technical Information (OSTI.GOV)

Slavin, Jonathan D.; Smith, Randall K.; Foster, Adam

The mixed morphology class of supernova remnants has centrally peaked X-ray emission along with a shell-like morphology in radio emission. White and Long proposed that these remnants are evolving in a cloudy medium wherein the clouds are evaporated via thermal conduction once being overrun by the expanding shock. Their analytical model made detailed predictions regarding temperature, density, and emission profiles as well as shock evolution. We present numerical hydrodynamical models in 2D and 3D including thermal conduction, testing the White and Long model and presenting results for the evolution and emission from remnants evolving in a cloudy medium. We findmore » that, while certain general results of the White and Long model hold, such as the way the remnants expand and the flattening of the X-ray surface brightness distribution, in detail there are substantial differences. In particular we find that the X-ray luminosity is dominated by emission from shocked cloud gas early on, leading to a bright peak, which then declines and flattens as evaporation becomes more important. In addition, the effects of thermal conduction on the intercloud gas, which is not included in the White and Long model, are important and lead to further flattening of the X-ray brightness profile as well as lower X-ray emission temperatures.« less

Genesis and geomorphic evolution of the Velké pinky stopes in the Zlatohorská Highlands, Eastern Sudetes

NASA Astrophysics Data System (ADS)

Lenart, Jan; Tichavský, Radek; Večeřa, Josef; Kapustová, Veronika; Šilhán, Karel

2017-11-01

Montanogenic landforms are commonly viewed as hazards by society, but they are also holders of specific and uncommon morphology with unique dynamics that act as remarks on landscape history. The Velké pinky stopes in the Zlatohorská Highlands, Eastern Sudetes, are naturally revitalized post-mining landforms with long-term geoecological succession. Their genetic origin is diverse but recent processes, such as deep-seated slope deformations, rockfalls and ground subsidence, have resulted in a distinct morphology dominated by rock walls and the accumulation of blocks and debris wedges. This morphology predisposes the stopes to become the core area of the most recent dynamic geomorphic activity within the wider, relatively homogenous area. By dendrogeomorphic techniques, we identified more than 20 rockfall events within three of the stopes with increased activity since the 1980s. Only the 1991 and 2006 events were identical for all three stopes. We obtained the years of exposures from 10 roots, revealing the ground subsidence and opening of tension cracks or even the lateral retreat of the flanks of minor depressions. The Schmidt hammer test revealed the most recent and fresh gravitational activity in one of the stopes. A relationship between the superficial morphology and underground structure was proven by electrical resistivity profiling. Compared to the previous studies engaged with the abandoned mines, we presented how complex their evolution can be. Our study brings new information about the historical development of anthropogenic relief forms. Moreover, our results suggest that standard research approaches can be successfully applied for development analysis of these specific forms.

Phylogeography and alpha taxonomy of the common dolphin (Delphinus sp.).

PubMed

Natoli, A; Cañadas, A; Peddemors, V M; Aguilar, A; Vaquero, C; Fernández-Piqueras, P; Hoelzel, A R

2006-05-01

The resolution of taxonomic classifications for delphinid cetaceans has been problematic, especially for species in the genera Delphinus, Tursiops and Stenella. The frequent lack of correspondence between morphological and genetic differentiation in these species raises questions about the mechanisms responsible for their evolution. In this study we focus on the genus Delphinus, and use molecular markers to address questions about speciation and the evolution of population structure. Delphinus species have a worldwide distribution and show a high degree of morphological variation. Two distinct morphotypes, long-beaked and short-beaked, have been considered different species named D. capensis and D. delphis, respectively. However, genetic differentiation between these two forms has only been demonstrated in the Pacific. We analysed samples from eight different geographical regions, including two morphologically defined long-beaked form populations, and compared these with the eastern North Pacific populations. We found high differentiation among the populations described as long-beaked instead of the expected monophyly, suggesting that these populations may have evolved from independent events converging on the same morphotype. We observed low genetic differentiation among the short-beaked populations across a large geographical scale. We interpret these phylogeographical patterns in the context of life history and population structure in related species.

Long-term environmental and health implications of morphological change and sediment transport with respect to contaminants

NASA Astrophysics Data System (ADS)

Sneddon, Christopher; Copplestone, David; Tyler, Andrew; Hunter, Peter; Smith, Nick

2014-05-01

The EPSRC-funded Adaptation and Resilience of Coastal Energy Supply (ARCoES) project encompasses four research strands, involving 14 institutions and six PhD studentships. ARCoES aims to determine the threats posed to future energy generation and the distribution network by flooding and erosion, changing patterns of coastal sedimentation, water temperature and the distribution of plants and animals in the coastal zone. Whilst this research has direct benefits for the operation of coastal power stations, ARCoES aims to have a wider stakeholder engagement through assessing how the resilience of coastal communities may be altered by five hundred years of coastal evolution. Coastal evolution will have substantial implications for the energy sector of the North West of England as former waste storage sites are eroded and remobilised within the intertidal environment. The current intertidal environmental stores of radioactivity will also experience reworking as ocean chemistry changes and saltmarsh chronologies are reworked in response to rising sea levels. There is a duel requirement to understand mass sediment movement along the North West coast of England as understanding the sediment transport dynamics is key to modelling long term coastal change and understanding how the environmental store of radioactivity will be reworked. The University of Stirling is researching the long-term environmental and health implications of remobilisation and transport of contaminated sediments around the UK coastline. Using a synergy of hyperspectral and topographic information the mobilisation of sediment bound contaminants within the coastal environment will be investigated. Potential hazards posed by contaminants are determined by a set of environmental impact test criteria which evaluate the bio-accessibility and ionising dose of contaminants. These test criteria will be used to comment on the likely environmental impact of modelled sediment transport and anticipated changes in ocean chemistry.

The long-term evolution of known resonant trans-Neptunian objects

NASA Astrophysics Data System (ADS)

Saillenfest, M.; Lari, G.

2017-07-01

Aims: Numerous trans-Neptunian objects are known to be in mean-motion resonance with Neptune. We aim to describe their long-term orbital evolution (both past and future) by means of a one-degree-of-freedom secular model. In this paper, we focus only on objects with a semi-major axis larger than 50 astronomical units (au). Methods: For each resonant object considered, a 500 000-year numerical integration is performed. The output is digitally filtered to get the parameters of the resonant secular model. Their long-term (Giga-year) orbital evolution is then represented by the level curves of the secular Hamiltonian. Results: For the majority of objects considered, the mean-motion resonance has little impact on the long-term trajectories (the secular dynamics is similar to a non-resonant one). However, a subset of objects is strongly affected by the resonance, producing moderately-high-amplitude oscillations of the perihelion distance and/or libration of the argument of perihelion around a fixed centre. Moreover, the high perihelion distance of the object 2015 FJ345 is plainly explained by long-term resonant dynamics, allowing us to also deduce its orbital elements at the time of capture in resonance (at least 15 million years ago). The same type of past evolution is expected for 2014 FZ71.

Course of alcoholic chronic pancreatitis: a prospective clinicomorphological long-term study.

PubMed

Ammann, R W; Heitz, P U; Klöppel, G

1996-07-01

The pathogenesis of alcoholic chronic pancreatitis and its relationship to alcoholic acute pancreatitis are debated. According to our recent clinical long-term study, alcoholic chronic pancreatitis seems to evolve from severe acute pancreatits. The aim of this study was to correlate clinical findings to the pancreatic histopathology at early and advanced stages of the disease. Morphological changes (pseudocysts, autodigestive necrosis, calcification, and perilobular and intralobular fibrosis) were recorded in 37 surgical and 46 postmortem pancreas specimens of 73 patients from our long-term series, who progressed from clinically acute to chronic pancreatitis (mean follow-up, 12 years). Pancreatic function was monitored at yearly intervals. Surgical interventions were performed at a mean of 4.1 years from onset. Histologically, focal necrosis (49%) and mild perilobular fibrosis (54%) predominated, Pseudocysts (n = 41, mostly postnecrotic) occurred in 88% within 6 years from onset. Autopsy specimens were obtained at a mean of 12 years. These pancreata often showed severe perilobular and intralobular fibrosis (85%) and calcifications (74%), but rarely necrosis (4%). Fibrosis correlated with progressive pancreatic dysfunction (P < 0.001), particularly in the 10 patients with two histological assessments (mean interval between biopsy and autopsy, 8 years). The data support an evolution from severe alcoholic acute pancreatitis to chronic pancreatitis.

Long-term phenotypic evolution of bacteria.

PubMed

Plata, Germán; Henry, Christopher S; Vitkup, Dennis

2015-01-15

For many decades comparative analyses of protein sequences and structures have been used to investigate fundamental principles of molecular evolution. In contrast, relatively little is known about the long-term evolution of species' phenotypic and genetic properties. This represents an important gap in our understanding of evolution, as exactly these proprieties play key roles in natural selection and adaptation to diverse environments. Here we perform a comparative analysis of bacterial growth and gene deletion phenotypes using hundreds of genome-scale metabolic models. Overall, bacterial phenotypic evolution can be described by a two-stage process with a rapid initial phenotypic diversification followed by a slow long-term exponential divergence. The observed average divergence trend, with approximately similar fractions of phenotypic properties changing per unit time, continues for billions of years. We experimentally confirm the predicted divergence trend using the phenotypic profiles of 40 diverse bacterial species across more than 60 growth conditions. Our analysis suggests that, at long evolutionary distances, gene essentiality is significantly more conserved than the ability to utilize different nutrients, while synthetic lethality is significantly less conserved. We also find that although a rapid phenotypic evolution is sometimes observed within the same species, a transition from high to low phenotypic similarity occurs primarily at the genus level.

Revealing the long-term landscape evolution of the South Atlantic passive continental margin, Brazil and Namibia, by thermokinematic numerical modeling using the software code Pecube.

NASA Astrophysics Data System (ADS)

Stippich, Christian; Glasmacher, Ulrich Anton; Hackspacher, Peter

2015-04-01

The aim of the research is to quantify the long-term landscape evolution of the South Atlantic passive continental margin (SAPCM) in SE-Brazil and NW-Namibia. Excellent onshore outcrop conditions and complete rift to post-rift archives between Sao Paulo and Porto Alegre and in the transition from Namibia to Angola (onshore Walvis ridge) allow a high precision quantification of exhumation, and uplift rates, influencing physical parameters, long-term acting forces, and process-response systems. Research will integrate the published and partly published thermochronological data from Brazil and Namibia, and test lately published new concepts on causes of long-term landscape evolution at rifted margins. The climate-continental margin-mantle coupled process-response system is caused by the interaction between endogenous and exogenous forces, which are related to the mantle-process driven rift - drift - passive continental margin evolution of the South Atlantic, and the climate change since the Early/Late Cretaceous climate maximum. Special emphasis will be given to the influence of long-living transform faults such as the Florianopolis Fracture Zone (FFZ) on the long-term topography evolution of the SAPCM's. A long-term landscape evolution model with process rates will be achieved by thermo-kinematic 3-D modeling (software code PECUBE1,2 and FastScape3). Testing model solutions obtained for a multidimensional parameter space against the real thermochronological and geomorphological data set, the most likely combinations of parameter rates, and values can be constrained. The data and models will allow separating the exogenous and endogenous forces and their process rates. References 1. Braun, J., 2003. Pecube: A new finite element code to solve the 3D heat transport equation including the effects of a time-varying, finite amplitude surface topography. Computers and Geosciences, v.29, pp.787-794. 2. Braun, J., van der Beek, P., Valla, P., Robert, X., Herman, F., Goltzbacj, C., Pedersen, V., Perry, C., Simon-Labric, T., Prigent, C. 2012. Quantifying rates of landscape evolution and tectonic processes by thermochronology and numerical modeling of crustal heat transport using PECUBE. Tectonophysics, v.524-525, pp.1-28. 3. Braun, J. and Willett, S.D., 2013. A very efficient, O(n), implicit and parallel method to solve the basic stream power law equation governing fluvial incision and landscape evolution. Geomorphology, v.180-181, 170-179.

Morphological, Structural and Optical Evolution of Ag Nanostructures on c-Plane GaN Through the Variation of Deposition Amount and Temperature

NASA Astrophysics Data System (ADS)

Sui, Mao; Li, Ming-Yu; Pandey, Puran; Zhang, Quanzhen; Kunwar, Sundar; Lee, Jihoon

2018-03-01

Owing to their tunable properties, Ag nanostructures have been widely adapted in various applications and the morphological control can determine their performance and effectiveness. In this work, we demonstrate the morphological and optical evolution of Ag nanostructures on GaN (0001) by the systematic control of deposition amount at two distinctive annealing temperatures. Based on the Volmer-Weber and coalescence growth models, the nanostructure growth commenced by the thermal solid-state-dewetting evolve in terms of size, density and configuration. At 450 °C, the round-dome shaped Ag nanoparticles (regime I), irregular Ag nano-mounds (regime II) and void-layer structures (regime III) are observed along with the gradually increased deposition amount. As a sharp distinction, the solid state dewetting process occur more radically at 700 °C and also, the Ag sublimation and the effect on the nanostructure formation are observed in a clear regime shift scaled by the deposition amount. Meanwhile, a strong dependency of reflectance spectra evolution on the Ag nanostructure morphology is witnessed for both sets. In particular, Ag dipolar resonance peaks are significantly red-shifted from VIS to NIR regions along with the nanostructure evolution. The reflectance, PL and Raman intensity variation are also observed and discussed based on the evolution of Ag nanostructures.

Formation and evolution of valley-bottom and channel features, Lower Deschutes River, Oregon

USGS Publications Warehouse

Curran, Janet H.; O'Conner, Jim E.; O'Conner, Jim E.; Grant, Gordon E.

2003-01-01

Primary geologic and geomorphic processes that formed valley-bottom and channel features downstream from the Pelton-Round Butte dam complex are inferred from a canyon-long analysis of feature morphology, composition, location, and spatial distribution. Major controls on valley-bottom morphology are regional tectonics, large landslides, and outsized floods (floods with return periods greater than 1000 yrs), which include the late Holocene Outhouse Flood and several Quaternary landslide dam failures. Floods with a return period on the order of 100 yrs, including historical floods in 1996, 1964, and 1861, contribute to fan building and flood plain formation only within the resistant framework established by the major controls. Key processes in the formation of channel features, in particular the 153 islands and 23 large rapids, include long-term bedrock erosion, outsized floods, and century-scale floods. Historical analysis of channel conditions since 1911 indicates that the largest islands, which are cored by outsized-flood deposits, locally control channel location, although their margins are substantially modified during annual- to century-scale floods. Islands cored by bedrock have changed little. Islands formed by annual- to century-scale floods are more susceptible to dynamic interactions between tributary sediment inputs, mainstem flow hydraulics, and perhaps riparian vegetation. Temporal patterns of island change in response to the sequence of 20th century flooding indicate that many islands accreted sediment during annual- to decadal-scale floods, but eroded during larger century-scale floods. There is, however, no clear trend of long-term changes in patterns of island growth, movement, or erosion either spatially or temporally within the lower Deschutes River.

The Montaguto earth flow: nine years of observation and analysis

USGS Publications Warehouse

Guerriero, L.; Revellino, R; Grelle, G.; Diodato, N; Guadagno, F.M.; Coe, Jeffrey A.

2016-01-01

This paper summarizes the methods, results, and interpretation of analyses carried out between 2006 and 2015 at the Montaguto earth flow in southern Italy. We conducted a multi-temporal analysis of earth-flow activity to reconstruct the morphological and structural evolution of the flow. Data from field mapping were combined with a geometric reconstruction of the basal slip surface in order to investigate relations between basal-slip surface geometry and deformation styles of earth-flow material. Moreover, we reconstructed the long-term pattern of earth-flow movement using both historical observations and modeled hydrologic and climatic data. Hydrologic and climatic data were used to develop a Landslide Hydrological Climatological (LHC) indicator model.

Demographic history, selection and functional diversity of the canine genome.

PubMed

Ostrander, Elaine A; Wayne, Robert K; Freedman, Adam H; Davis, Brian W

2017-12-01

The domestic dog represents one of the most dramatic long-term evolutionary experiments undertaken by humans. From a large wolf-like progenitor, unparalleled diversity in phenotype and behaviour has developed in dogs, providing a model for understanding the developmental and genomic mechanisms of diversification. We discuss pattern and process in domestication, beginning with general findings about early domestication and problems in documenting selection at the genomic level. Furthermore, we summarize genotype-phenotype studies based first on single nucleotide polymorphism (SNP) genotyping and then with whole-genome data and show how an understanding of evolution informs topics as different as human history, adaptive and deleterious variation, morphological development, ageing, cancer and behaviour.

Pityriasis rubra pilaris: evolution of challenges in promising treatment options.

PubMed

Sehgal, Virendra N; Srivastava, Govind; Verma, Prashant

2012-01-01

Pityriasis rubra pilaris is an uncommon inflammatory dermatosis that is well recognized across the globe. Erythroderma is a common presentation. A precise diagnosis of pityriasis rubra pilaris is based on morphologic features and is classified into 6 types: classic adult onset (type I), atypical adult (type II), classic juvenile (type III), circumscribed juvenile (type IV), atypical juvenile (type V), and human immunodeficiency virus-associated (type VI). Several conventional systemic and/or topical treatments are currently in use. Largely, their results are unsatisfactory and limited by long-term toxicity. The authors investigate the efficacy of a wide spectrum of drugs by examining historical (archive) and promising (modern) treatment modalities for the treatment of pityriasis rubra pilaris.

Probing the Evolution of the Galaxy Interaction/Merger Rate Using Distant Collisional Ring Galaxies

NASA Astrophysics Data System (ADS)

Lavery, Russell J.; Remijan, Anthony J.

We present the initial results from our long-term program of identifying distant collisional ring galaxies (CRGS) in deep HST WFPC-2 images. The unique morphological characteristics of these galaxies make them easily identifiable out to a redshift of z = 1. To date, we have visually scanned 100 WFPC-2 fields and identified 14 excellent collisional ring galaxy (CRG) candidates. Based on estimated redshifts, these 14 galaxies are expected to lie in the redshift interval of 0.1 to 1. We have used this sample of CRGs to estimate the evolution of the galaxy interaction/merger rate with redshift. To account for the number of CRGs we have identified in these fields, the galaxy interaction/merger rate, parameterized as (1 + z)m, must increase steeply with redshift, with m = 5.7 +/- 1.5. We can rule out a non-evolving galaxy merger rate (m = 0) at greater than the 3σ level. We compare our results with other programs to determine the value of m using the evolution of galaxy pairs.

Adaptation and Convergent Evolution within the Jamesonia-Eriosorus Complex in High-Elevation Biodiverse Andean Hotspots

PubMed Central

Sánchez-Baracaldo, Patricia; Thomas, Gavin H.

2014-01-01

The recent uplift of the tropical Andes (since the late Pliocene or early Pleistocene) provided extensive ecological opportunity for evolutionary radiations. We test for phylogenetic and morphological evidence of adaptive radiation and convergent evolution to novel habitats (exposed, high-altitude páramo habitats) in the Andean fern genera Jamesonia and Eriosorus. We construct time-calibrated phylogenies for the Jamesonia-Eriosorus clade. We then use recent phylogenetic comparative methods to test for evolutionary transitions among habitats, associations between habitat and leaf morphology, and ecologically driven variation in the rate of morphological evolution. Páramo species (Jamesonia) display morphological adaptations consistent with convergent evolution in response to the demands of a highly exposed environment but these adaptations are associated with microhabitat use rather than the páramo per se. Species that are associated with exposed microhabitats (including Jamesonia and Eriorsorus) are characterized by many but short pinnae per frond whereas species occupying sheltered microhabitats (primarily Eriosorus) have few but long pinnae per frond. Pinnae length declines more rapidly with altitude in sheltered species. Rates of speciation are significantly higher among páramo than non-páramo lineages supporting the hypothesis of adaptation and divergence in the unique Páramo biodiversity hotspot. PMID:25340770

Adaptation and convergent evolution within the Jamesonia-Eriosorus complex in high-elevation biodiverse Andean hotspots.

PubMed

Sánchez-Baracaldo, Patricia; Thomas, Gavin H

2014-01-01

The recent uplift of the tropical Andes (since the late Pliocene or early Pleistocene) provided extensive ecological opportunity for evolutionary radiations. We test for phylogenetic and morphological evidence of adaptive radiation and convergent evolution to novel habitats (exposed, high-altitude páramo habitats) in the Andean fern genera Jamesonia and Eriosorus. We construct time-calibrated phylogenies for the Jamesonia-Eriosorus clade. We then use recent phylogenetic comparative methods to test for evolutionary transitions among habitats, associations between habitat and leaf morphology, and ecologically driven variation in the rate of morphological evolution. Páramo species (Jamesonia) display morphological adaptations consistent with convergent evolution in response to the demands of a highly exposed environment but these adaptations are associated with microhabitat use rather than the páramo per se. Species that are associated with exposed microhabitats (including Jamesonia and Eriorsorus) are characterized by many but short pinnae per frond whereas species occupying sheltered microhabitats (primarily Eriosorus) have few but long pinnae per frond. Pinnae length declines more rapidly with altitude in sheltered species. Rates of speciation are significantly higher among páramo than non-páramo lineages supporting the hypothesis of adaptation and divergence in the unique Páramo biodiversity hotspot.

The double switch for atrioventricular discordance.

PubMed

Brawn, William J

2005-01-01

Conventional surgery for atrioventricular discordance usually associated with ventricular arterial discordance leaves the morphologic right ventricle in the systemic circulation. Long-term follow-up results with this approach reveal a high incidence of right ventricular failure. The double switch procedure was introduced to restore the morphologic left ventricle to the systemic circulation. This operation is performed in two main ways: the atrial-arterial switch and the atrial switch plus Rastelli procedure. This double switch approach has been successful at least in the medium term in abolishing morphologic right ventricular failure and its associated tricuspid valve regurgitation. In the atrial-arterial switch group, there is an incidence of morphologic left ventricular dysfunction, sometimes associated with neoaortic valve regurgitation, and the minority of cases need aortic valve replacement. The long-term function of the morphologic left ventricle and the aortic valve need careful surveillance in the future. The atrial-Rastelli group of patients has not in the medium term shown evidence of ventricular dysfunction but will require change on a regular basis of their ventricular to pulmonary artery valved conduits.

Long-term Culture of Human iPS Cell-derived Telencephalic Neuron Aggregates on Collagen Gel.

PubMed

Oyama, Hiroshi; Takahashi, Koji; Tanaka, Yoshikazu; Takemoto, Hiroshi; Haga, Hisashi

2018-01-01

It takes several months to form the 3-dimensional morphology of the human embryonic brain. Therefore, establishing a long-term culture method for neuronal tissues derived from human induced pluripotent stem (iPS) cells is very important for studying human brain development. However, it is difficult to keep primary neurons alive for more than 3 weeks in culture. Moreover, long-term adherent culture to maintain the morphology of telencephalic neuron aggregates induced from human iPS cells is also difficult. Although collagen gel has been widely used to support long-term culture of cells, it is not clear whether human iPS cell-derived neuron aggregates can be cultured for long periods on this substrate. In the present study, we differentiated human iPS cells to telencephalic neuron aggregates and examined long-term culture of these aggregates on collagen gel. The results indicated that these aggregates could be cultured for over 3 months by adhering tightly onto collagen gel. Furthermore, telencephalic neuronal precursors within these aggregates matured over time and formed layered structures. Thus, long-term culture of telencephalic neuron aggregates derived from human iPS cells on collagen gel would be useful for studying human cerebral cortex development.Key words: Induced pluripotent stem cell, forebrain neuron, collagen gel, long-term culture.

Morphological Evolution of Pit-Patterned Si(001) Substrates Driven by Surface-Energy Reduction

NASA Astrophysics Data System (ADS)

Salvalaglio, Marco; Backofen, Rainer; Voigt, Axel; Montalenti, Francesco

2017-09-01

Lateral ordering of heteroepitaxial islands can be conveniently achieved by suitable pit-patterning of the substrate prior to deposition. Controlling shape, orientation, and size of the pits is not trivial as, being metastable, they can significantly evolve during deposition/annealing. In this paper, we exploit a continuum model to explore the typical metastable pit morphologies that can be expected on Si(001), depending on the initial depth/shape. Evolution is predicted using a surface-diffusion model, formulated in a phase-field framework, and tackling surface-energy anisotropy. Results are shown to nicely reproduce typical metastable shapes reported in the literature. Moreover, long time scale evolutions of pit profiles with different depths are found to follow a similar kinetic pathway. The model is also exploited to treat the case of heteroepitaxial growth involving two materials characterized by different facets in their equilibrium Wulff's shape. This can lead to significant changes in morphologies, such as a rotation of the pit during deposition as evidenced in Ge/Si experiments.

Morphological Evolution of Pit-Patterned Si(001) Substrates Driven by Surface-Energy Reduction.

PubMed

Salvalaglio, Marco; Backofen, Rainer; Voigt, Axel; Montalenti, Francesco

2017-09-29

Lateral ordering of heteroepitaxial islands can be conveniently achieved by suitable pit-patterning of the substrate prior to deposition. Controlling shape, orientation, and size of the pits is not trivial as, being metastable, they can significantly evolve during deposition/annealing. In this paper, we exploit a continuum model to explore the typical metastable pit morphologies that can be expected on Si(001), depending on the initial depth/shape. Evolution is predicted using a surface-diffusion model, formulated in a phase-field framework, and tackling surface-energy anisotropy. Results are shown to nicely reproduce typical metastable shapes reported in the literature. Moreover, long time scale evolutions of pit profiles with different depths are found to follow a similar kinetic pathway. The model is also exploited to treat the case of heteroepitaxial growth involving two materials characterized by different facets in their equilibrium Wulff's shape. This can lead to significant changes in morphologies, such as a rotation of the pit during deposition as evidenced in Ge/Si experiments.

Genetic Drift, Not Life History or RNAi, Determine Long-Term Evolution of Transposable Elements

PubMed Central

Szitenberg, Amir; Cha, Soyeon; Opperman, Charles H.; Bird, David M.; Blaxter, Mark L.; Lunt, David H.

2016-01-01

Abstract Transposable elements (TEs) are a major source of genome variation across the branches of life. Although TEs may play an adaptive role in their host’s genome, they are more often deleterious, and purifying selection is an important factor controlling their genomic loads. In contrast, life history, mating system, GC content, and RNAi pathways have been suggested to account for the disparity of TE loads in different species. Previous studies of fungal, plant, and animal genomes have reported conflicting results regarding the direction in which these genomic features drive TE evolution. Many of these studies have had limited power, however, because they studied taxonomically narrow systems, comparing only a limited number of phylogenetically independent contrasts, and did not address long-term effects on TE evolution. Here, we test the long-term determinants of TE evolution by comparing 42 nematode genomes spanning over 500 million years of diversification. This analysis includes numerous transitions between life history states, and RNAi pathways, and evaluates if these forces are sufficiently persistent to affect the long-term evolution of TE loads in eukaryotic genomes. Although we demonstrate statistical power to detect selection, we find no evidence that variation in these factors influence genomic TE loads across extended periods of time. In contrast, the effects of genetic drift appear to persist and control TE variation among species. We suggest that variation in the tested factors are largely inconsequential to the large differences in TE content observed between genomes, and only by these large-scale comparisons can we distinguish long-term and persistent effects from transient or random changes. PMID:27566762

Extinction events can accelerate evolution.

PubMed

Lehman, Joel; Miikkulainen, Risto

2015-01-01

Extinction events impact the trajectory of biological evolution significantly. They are often viewed as upheavals to the evolutionary process. In contrast, this paper supports the hypothesis that although they are unpredictably destructive, extinction events may in the long term accelerate evolution by increasing evolvability. In particular, if extinction events extinguish indiscriminately many ways of life, indirectly they may select for the ability to expand rapidly through vacated niches. Lineages with such an ability are more likely to persist through multiple extinctions. Lending computational support for this hypothesis, this paper shows how increased evolvability will result from simulated extinction events in two computational models of evolved behavior. The conclusion is that although they are destructive in the short term, extinction events may make evolution more prolific in the long term.

User Acceptance of Long-Term Evolution (LTE) Services: An Application of Extended Technology Acceptance Model

ERIC Educational Resources Information Center

Park, Eunil; Kim, Ki Joon

2013-01-01

Purpose: The aim of this paper is to propose an integrated path model in order to explore user acceptance of long-term evolution (LTE) services by examining potential causal relationships between key psychological factors and user intention to use the services. Design/methodology/approach: Online survey data collected from 1,344 users are analysed…

Mitochondrial genomes suggest rapid evolution of dwarf California Channel Islands foxes (Urocyon littoralis).

PubMed

Hofman, Courtney A; Rick, Torben C; Hawkins, Melissa T R; Funk, W Chris; Ralls, Katherine; Boser, Christina L; Collins, Paul W; Coonan, Tim; King, Julie L; Morrison, Scott A; Newsome, Seth D; Sillett, T Scott; Fleischer, Robert C; Maldonado, Jesus E

2015-01-01

Island endemics are typically differentiated from their mainland progenitors in behavior, morphology, and genetics, often resulting from long-term evolutionary change. To examine mechanisms for the origins of island endemism, we present a phylogeographic analysis of whole mitochondrial genomes from the endangered island fox (Urocyon littoralis), endemic to California's Channel Islands, and mainland gray foxes (U. cinereoargenteus). Previous genetic studies suggested that foxes first appeared on the islands >16,000 years ago, before human arrival (~13,000 cal BP), while archaeological and paleontological data supported a colonization >7000 cal BP. Our results are consistent with initial fox colonization of the northern islands probably by rafting or human introduction ~9200-7100 years ago, followed quickly by human translocation of foxes from the northern to southern Channel Islands. Mitogenomes indicate that island foxes are monophyletic and most closely related to gray foxes from northern California that likely experienced a Holocene climate-induced range shift. Our data document rapid morphological evolution of island foxes (in ~2000 years or less). Despite evidence for bottlenecks, island foxes have generated and maintained multiple mitochondrial haplotypes. This study highlights the intertwined evolutionary history of island foxes and humans, and illustrates a new approach for investigating the evolutionary histories of other island endemics.

Mitochondrial Genomes Suggest Rapid Evolution of Dwarf California Channel Islands Foxes (Urocyon littoralis)

PubMed Central

Hofman, Courtney A.; Rick, Torben C.; Hawkins, Melissa T. R.; Funk, W. Chris; Ralls, Katherine; Boser, Christina L.; Collins, Paul W.; Coonan, Tim; King, Julie L.; Morrison, Scott A.; Newsome, Seth D.; Sillett, T. Scott; Fleischer, Robert C.; Maldonado, Jesus E.

2015-01-01

Island endemics are typically differentiated from their mainland progenitors in behavior, morphology, and genetics, often resulting from long-term evolutionary change. To examine mechanisms for the origins of island endemism, we present a phylogeographic analysis of whole mitochondrial genomes from the endangered island fox (Urocyon littoralis), endemic to California’s Channel Islands, and mainland gray foxes (U. cinereoargenteus). Previous genetic studies suggested that foxes first appeared on the islands >16,000 years ago, before human arrival (~13,000 cal BP), while archaeological and paleontological data supported a colonization >7000 cal BP. Our results are consistent with initial fox colonization of the northern islands probably by rafting or human introduction ~9200–7100 years ago, followed quickly by human translocation of foxes from the northern to southern Channel Islands. Mitogenomes indicate that island foxes are monophyletic and most closely related to gray foxes from northern California that likely experienced a Holocene climate-induced range shift. Our data document rapid morphological evolution of island foxes (in ~2000 years or less). Despite evidence for bottlenecks, island foxes have generated and maintained multiple mitochondrial haplotypes. This study highlights the intertwined evolutionary history of island foxes and humans, and illustrates a new approach for investigating the evolutionary histories of other island endemics. PMID:25714775

Chinese L1 children's English L2 verb morphology over time: individual variation in long-term outcomes.

PubMed

Paradis, Johanne; Tulpar, Yasemin; Arppe, Antti

2016-05-01

This study examined accuracy in production and grammaticality judgements of verb morphology by eighteen Chinese-speaking children learning English as a second language (L2) followed longitudinally from four to six years of exposure to English, and who began to learn English at age 4;2. Children's growth in accuracy with verb morphology reached a plateau by six years, where 11/18 children did not display native-speaker levels of accuracy for one or more morphemes. Variation in children's accuracy with verb morphology was predicted by their English vocabulary size and verbal short-term memories primarily, and quality and quantity of English input at home secondarily. This study shows that even very young L2 learners might not all catch up to native speakers in this time frame and that non-age factors play a role in determining individual variation in child L2 learners' long-term outcomes with English morphology.

Computer simulation of morphological evolution and rafting of {gamma}{prime} particles in Ni-based superalloys under applied stresses

DOE Office of Scientific and Technical Information (OSTI.GOV)

Li, D.Y.; Chen, L.Q.

Mechanical properties of Ni-based superalloys are strongly affected by the morphology, distribution, and size of {gamma}{prime} precipitates in the {gamma} matrix. The main purpose of this paper is to propose a continuum field approach for modeling the morphology and rafting kinetics of coherent precipitates under applied stresses. This approach can be used to simulate the temporal evolution of arbitrary morphologies and microstructures without any a priori assumption. Recently, the authors applied this approach to the selected variant growth in Ni-Ti alloys under applied stresses using an inhomogeneous modulus approximation. For the {gamma}{prime} precipitates in Ni-based superalloys, the eigenstrain is dilatational,more » and hence the {gamma}{prime} morphological evolution can be affected by applied stresses only when the elastic modulus is inhomogeneous. In the present work, the elastic inhomogeneity was taken into account by reformulating a sharp-interface elasticity theory developed recently by Khachaturyan et al. in terms of diffuse interfaces. Although the present work is for a {gamma}{prime} {minus} {gamma} system, this model is general in a sense that it can be applied to other alloy systems containing coherent ordered intermetallic precipitates with elastic inhomogeneity.« less

Dating human cultural capacity using phylogenetic principles

PubMed Central

Lind, J.; Lindenfors, P.; Ghirlanda, S.; Lidén, K.; Enquist, M.

2013-01-01

Humans have genetically based unique abilities making complex culture possible; an assemblage of traits which we term “cultural capacity”. The age of this capacity has for long been subject to controversy. We apply phylogenetic principles to date this capacity, integrating evidence from archaeology, genetics, paleoanthropology, and linguistics. We show that cultural capacity is older than the first split in the modern human lineage, and at least 170,000 years old, based on data on hyoid bone morphology, FOXP2 alleles, agreement between genetic and language trees, fire use, burials, and the early appearance of tools comparable to those of modern hunter-gatherers. We cannot exclude that Neanderthals had cultural capacity some 500,000 years ago. A capacity for complex culture, therefore, must have existed before complex culture itself. It may even originated long before. This seeming paradox is resolved by theoretical models suggesting that cultural evolution is exceedingly slow in its initial stages. PMID:23648831

The evolution of morphological diversity in continental assemblages of passerine birds.

PubMed

Jønsson, Knud Andreas; Lessard, Jean-Philippe; Ricklefs, Robert E

2015-04-01

Understanding geographic variation in the species richness and lineage composition of regional biotas is a long-standing goal in ecology. Why do some evolutionary lineages proliferate while others do not, and how do new colonists fit into an established fauna? Here, we analyze the morphological structure of assemblages of passerine birds in four biogeographic regions to examine the relative influence of colonization history and niche-based processes on continental communities of passerine birds. Using morphological traits related to habitat choice, foraging technique, and movement, we quantify the morphological spaces occupied by different groups of passerine birds. We further quantify morphological overlap between groups by multivariate discriminant analysis and null model analyses of trait dispersion. Finally, we use subclade disparity through time to assess the temporal component of morphological evolution. We find mixed support for the prediction, based on priority, that first colonizers constrain subsequent colonizers. Indeed, our results show that the assembly of continental communities is idiosyncratic with regards to the diversification of new clades and the filling of morphospace. © 2015 The Author(s).

Evolution of strategic risks under future scenarios for improved utility master plans.

PubMed

Luís, Ana; Lickorish, Fiona; Pollard, Simon

2016-01-01

Integrated, long-term risk management in the water sector is poorly developed. Whilst scenario planning has been applied to singular issues (e.g. climate change), it often misses a link to risk management because the likelihood of impacts in the long-term are frequently unaccounted for in these analyses. Here we apply the morphological approach to scenario development for a case study utility, Empresa Portuguesa das Águas Livres (EPAL). A baseline portfolio of strategic risks threatening the achievement of EPAL's corporate objectives was evolved through the lens of three future scenarios, 'water scarcity', 'financial resource scarcity' and 'strong economic growth', built on drivers such as climate, demographic, economic, regulatory and technological changes and validated through a set of expert workshops. The results represent how the baseline set of risks might develop over a 30 year period, allowing threats and opportunities to be identified and enabling strategies for master plans to be devised. We believe this to be the first combined use of risk and futures methods applied to a portfolio of strategic risks in the water utility sector. Copyright © 2015 Elsevier Ltd. All rights reserved.

The effects of short- and long-term air pollutants on plant phenology and leaf characteristics.

PubMed

Jochner, Susanne; Markevych, Iana; Beck, Isabelle; Traidl-Hoffmann, Claudia; Heinrich, Joachim; Menzel, Annette

2015-11-01

Pollution adversely affects vegetation; however, its impact on phenology and leaf morphology is not satisfactorily understood yet. We analyzed associations between pollutants and phenological data of birch, hazel and horse chestnut in Munich (2010) along with the suitability of leaf morphological parameters of birch for monitoring air pollution using two datasets: cumulated atmospheric concentrations of nitrogen dioxide and ozone derived from passive sampling (short-term exposure) and pollutant information derived from Land Use Regression models (long-term exposure). Partial correlations and stepwise regressions revealed that increased ozone (birch, horse chestnut), NO2, NOx and PM levels (hazel) were significantly related to delays in phenology. Correlations were especially high when rural sites were excluded suggesting a better estimation of long-term within-city pollution. In situ measurements of foliar characteristics of birch were not suitable for bio-monitoring pollution. Inconsistencies between long- and short-term exposure effects suggest some caution when interpreting short-term data collected within field studies. Copyright © 2015 Elsevier Ltd. All rights reserved.

Modeling Holocene Barrier Island Morphodynamics and Potential Future Response to Sea- Level Rise, Outer Banks, North Carolina

NASA Astrophysics Data System (ADS)

Moore, L. J.; List, J. H.; Williams, S. J.; Stolper, D.

2006-12-01

A morphological-behavior model, GEOMBEST, which simulates the evolution of coastal morphology and stratigraphy resulting from changes in sea level and sediment supply provides insight into how barriers evolve over time scales ranging from decades to millenia. The model is based upon behavior rules originating from "Bruun rule" concepts, with additional parameters to allow simulation of more complex real-world scenarios. Morphological evolution in the model is driven by disequilibrium between the shoreface and a user-specified theoretical equilibrium profile that maintains its vertical position relative to sea level. As sea level continues rising to an estimated 48 cm above current MSL by AD 2100 (IPCC 2001) and hurricanes of potentially greater intensity impact the coast, barrier islands will respond either by transgressing across underlying strata or by disintegrating and ultimately submerging. Recent studies suggest that some barriers along the U.S. East Coast will break up and become submerged within decades. Other studies show that barriers in Louisiana have already submerged while others are in the process of narrowing in place and submerging. Several factors determine barrier island response to sea-level rise. These include initial topography and morphology of the barrier, underlying geologic framework, availability and supply of sediment, rate of sea-level rise, frequency and intensity of coastal storms, and anthropogenic modifications to the coast. Sensitivity analyses conducted in GEOMBEST suggest that of these factors, barrier-island response is most sensitive to the rate of sea-level rise. The Holocene evolution of the Outer Banks and potential future responses to sea-level rise are explored for a 25-km stretch of coast between Rodanthe and Cape Hatteras, NC using GEOMBEST. An 8500-year hindcast simulation for the study area reproduces closely the morphology and stratigraphy of the modern barrier with approximately 5 x 109 m3 excavated from the Pleistocene substrate, liberating a volume of material sufficient to construct Diamond Shoals. This hindcast simulation serves as the basis for forward simulations of potential future barrier island evolution. A series of model runs based on the low- (0.09 m), mid- (0.48 m) and upper- (0.88 m) range of IPCC (2001) estimates for sea-level rise by the year 2100, suggest the barrier would migrate at rates of approximately 2, 6 and 10 m/yr, respectively. The latter two results would represent an increase over modern long-term erosion rates in the study area, which serve as a proxy for migration rates. Model simulations of barrier response to 4 and 6 m of sea-level rise by AD 2100 (Overpeck et al., 2006), result in model-generated migration rates of 43 and 68 m/yr, respectively. These rates far exceed the highest average long-term barrier island erosion rates observed today along the Louisiana Coast where the Chandeleur Islands disintegrated in response to Hurricane Katrina. If observations in Louisiana can be applied to barrier islands in North Carolina, then we can expect the Outer Banks to become vulnerable to disintegration when migration rates reach approximately 15-20 m/yr. The five forward simulations for the study area suggest rates in this range may be achieved in the Outer Banks if sea-level rise by AD 2100 exceeds IPCC (2001) estimates.

The coevolution of bed roughness, grain clustering, surface armoring, hydraulic roughness, and sediment transport rate in experimental coarse alluvial channels: implications for long-term effects of gravel augmentation

NASA Astrophysics Data System (ADS)

Johnson, J. P.; Aronovitz, A. C.

2012-12-01

We conducted laboratory flume experiments to quantify changes in multiple factors leading to mountain river bed stability (i.e., minimal bed changes in space and time), and to understand how stable beds respond to perturbations in sediment supply. Experiments were run in a small flume 4 m long by 0.1 m wide. We imposed an initial well-graded size distribution of sediment (from coarse sand to up to 4 cm clasts), a steady water discharge (0.9 L/s), and initial bed surface slopes (8% and 12%). We measured outlet sediment flux and size distribution, bed topography and surface size distributions, and water depths; from these we calculated total shear stress, form drag and skin friction stress partitioning, and hydraulic roughness. The bed was initially allowed to stabilize with no imposed upstream sediment flux. This stabilization occurred due to significant changes in all of the factors listed in the title, and resulted in incipient step-pool like bed morphologies. In addition, this study was designed to explore possible long-term effects of gravel augmentation on mountain channel morphology and surface grain size. While the short-term goal of gravel augmentation is usually to cause fining of surface sediment patches, we find that the long-term effects may be opposite. We perturbed the stabilized channels by temporarily imposing an upstream sediment flux of the finest sediment size fraction (sand to granules). Median surface sizes initially decreased due to fine sediment deposition, although transport rates of intermediate-sized grains increased. When the fine sediment supply was stopped, beds evolved to be both rougher and coarser than they had been previously, because the largest grains remained on the bed but intermediate-sized grains were preferentially transported out, leaving higher fractions of larger grains on the surface. Existing models for mixed grain size transport actually predict changes in mobilization reasonably well, but do not explicity account for surface roughness evolution. Our results indicate a nonlinear relationship between surface median grain size and bed roughness.

From the seismic cycle to long-term deformation: linking seismic coupling and Quaternary coastal geomorphology along the Andean megathrust

NASA Astrophysics Data System (ADS)

Saillard, M.; Audin, L.; Rousset, B.; Avouac, J. P.; Chlieh, M.; Hall, S. R.; Husson, L.; Farber, D.

2017-12-01

Measurement of interseismic strain along subduction zones reveals the location of both locked asperities, which might rupture during megathrust earthquakes, and creeping zones, which tend to arrest such seismic ruptures. The heterogeneous pattern of interseismic coupling presumably relates to spatial variations of frictional properties along the subduction interface and may also show up in the fore-arc morphology. To investigate this hypothesis, we compiled information on the extent of earthquake ruptures for the last 500 yrs and uplift rates derived from dated marine terraces along the South American coastline from central Peru to southern Chile. We additionally calculated a new interseismic coupling model for that same area based on a compilation of GPS data. We show that the coastline geometry, characterized by the distance between the coast and the trench; the latitudinal variations of long-term uplift rates; and the spatial pattern of interseismic coupling are correlated. Zones of faster and long-term permanent coastal uplift, evidenced by uplifted marine terraces, coincide with peninsulas and also with areas of creep on the megathrust where slip is mostly aseismic and tend to arrest seismic ruptures. This correlation suggests that these areas prevent elastic strain buildup and inhibit lateral seismic rupture propagation. Correlation between the location of these regions across and along strike of convergence and the long-term morphology of the subduction margin suggests that the barrier effect might be due to rheology, namely rate-strengthening friction, although geometric effects might also play a secondary role. Higher shear stress along creeping segments of the megathrust than along segments dominated by recurring large earthquakes would favor more rapid viscoplastic (permanent) deformation of the fore arc and thus uplift. Marine terrace sequences attest to frictional properties along the megathrust persisting for million-year time scales. Peninsulas are the surface expression of large subduction earthquakes segment boundaries and show evidence for their stability over multiple seismic cycles. We conclude spatial variations of frictional properties along the megathrust dictate the tectono-geomorphological evolution of the coastal zone and the extent of seismic ruptures along strike.

Speciation on oceanic islands: rapid adaptive divergence vs. cryptic speciation in a Guadalupe Island songbird (Aves: Junco).

PubMed

Aleixandre, Pau; Hernández Montoya, Julio; Milá, Borja

2013-01-01

The evolutionary divergence of island populations, and in particular the tempo and relative importance of neutral and selective factors, is of central interest to the study of speciation. The rate of phenotypic evolution upon island colonization can vary greatly among taxa, and cases of convergent evolution can further confound the inference of correct evolutionary histories. Given the potential lability of phenotypic characters, molecular dating of insular lineages analyzed in a phylogenetic framework provides a critical tool to test hypotheses of phenotypic divergence since colonization. The Guadalupe junco is the only insular form of the polymorphic dark-eyed junco (Junco hyemalis), and shares eye and plumage color with continental morphs, yet presents an enlarged bill and reduced body size. Here we use variation in mtDNA sequence, morphological traits and song variables to test whether the Guadalupe junco evolved rapidly following a recent colonization by a mainland form of the dark-eyed junco, or instead represents a well-differentiated "cryptic" lineage adapted to the insular environment through long-term isolation, with plumage coloration a result of evolutionary convergence. We found high mtDNA divergence of the island lineage with respect to both continental J. hyemalis and J. phaeonotus, representing a history of isolation of about 600,000 years. The island lineage was also significantly differentiated in morphological and male song variables. Moreover, and contrary to predictions regarding diversity loss on small oceanic islands, we document relatively high levels of both haplotypic and song-unit diversity on Guadalupe Island despite long-term isolation in a very small geographic area. In contrast to prevailing taxonomy, the Guadalupe junco is an old, well-differentiated evolutionary lineage, whose similarity to mainland juncos in plumage and eye color is due to evolutionary convergence. Our findings confirm the role of remote islands in driving divergence and speciation, but also their potential role as repositories of ancestral diversity.

Evolutionary model of stock markets

NASA Astrophysics Data System (ADS)

Kaldasch, Joachim

2014-12-01

The paper presents an evolutionary economic model for the price evolution of stocks. Treating a stock market as a self-organized system governed by a fast purchase process and slow variations of demand and supply the model suggests that the short term price distribution has the form a logistic (Laplace) distribution. The long term return can be described by Laplace-Gaussian mixture distributions. The long term mean price evolution is governed by a Walrus equation, which can be transformed into a replicator equation. This allows quantifying the evolutionary price competition between stocks. The theory suggests that stock prices scaled by the price over all stocks can be used to investigate long-term trends in a Fisher-Pry plot. The price competition that follows from the model is illustrated by examining the empirical long-term price trends of two stocks.

The genome of Mesobuthus martensii reveals a unique adaptation model of arthropods

PubMed Central

Cao, Zhijian; Yu, Yao; Wu, Yingliang; Hao, Pei; Di, Zhiyong; He, Yawen; Chen, Zongyun; Yang, Weishan; Shen, Zhiyong; He, Xiaohua; Sheng, Jia; Xu, Xiaobo; Pan, Bohu; Feng, Jing; Yang, Xiaojuan; Hong, Wei; Zhao, Wenjuan; Li, Zhongjie; Huang, Kai; Li, Tian; Kong, Yimeng; Liu, Hui; Jiang, Dahe; Zhang, Binyan; Hu, Jun; Hu, Youtian; Wang, Bin; Dai, Jianliang; Yuan, Bifeng; Feng, Yuqi; Huang, Wei; Xing, Xiaojing; Zhao, Guoping; Li, Xuan; Li, Yixue; Li, Wenxin

2013-01-01

Representing a basal branch of arachnids, scorpions are known as ‘living fossils’ that maintain an ancient anatomy and are adapted to have survived extreme climate changes. Here we report the genome sequence of Mesobuthus martensii, containing 32,016 protein-coding genes, the most among sequenced arthropods. Although M. martensii appears to evolve conservatively, it has a greater gene family turnover than the insects that have undergone diverse morphological and physiological changes, suggesting the decoupling of the molecular and morphological evolution in scorpions. Underlying the long-term adaptation of scorpions is the expansion of the gene families enriched in basic metabolic pathways, signalling pathways, neurotoxins and cytochrome P450, and the different dynamics of expansion between the shared and the scorpion lineage-specific gene families. Genomic and transcriptomic analyses further illustrate the important genetic features associated with prey, nocturnal behaviour, feeding and detoxification. The M. martensii genome reveals a unique adaptation model of arthropods, offering new insights into the genetic bases of the living fossils. PMID:24129506

The effect of wind waves on spring-neap variations in sediment transport in two meso-tidal estuarine basins with contrasting fetch

NASA Astrophysics Data System (ADS)

Hunt, Stephen; Bryan, Karin R.; Mullarney, Julia C.

2017-03-01

Higher-energy episodic wind-waves can substantially modify estuarine morphology over short timescales which are superimposed on lower-energy but long-term tidal asymmetry effects. Theoretically, wind waves and tidal currents change the morphology through their combined influence on the asymmetry between bed shear stress, τmax, on the flood and ebb tide, although the relative contribution of such wind-wave events in shaping the long-term morphological evolution in real estuaries is not well known. If the rising tide reaches sufficiently high water depths, τmax decreases as water depth increases because of the depth attenuation of wave orbital velocities. However, this effect is opposed by the increase in τmax associated with the longer fetch occurring at high tide, which allows the generation of larger waves. Additionally, these effects are superimposed on the spring-neap variations in current associated with changes to tidal range. By comparing two mesotidal basins in the same dendritic estuary, one with a large fetch aligned with the prevailing wind direction and one with only a small fetch, we show that for a sufficiently large fetch even the small and frequently occurring wind events are able to create waves that are capable of changing the morphology ('morphologically significant'). Conversely, in the basin with reduced fetch, these waves are generated less frequently and therefore are of reduced morphological significance. Here, we find that although tidal current should be stronger during spring tides and alter morphology more, on average the reduced fetch and increased water depth during spring tides mean that the basin-averaged intertidal τmax is similar during both spring and neap tides. Moreover, in the presence of wind waves, the duration of slack water is reduced during neap tides relative to spring tides, resulting in a reduced chance for accretion during neap tides. Finally, τmax is lower in the subtidal channels during neaps than springs but of a similar magnitude over the intertidal areas, and so sediment is more likely to be advected from the intertidal regions during neap tides rather than springs. This spring-neap cycle in sediment transport potential is in sharp contrast to that found previously in microtidal wave-dominated environments, where spring tides are expected to enhance erosion.

pyBadlands: A framework to simulate sediment transport, landscape dynamics and basin stratigraphic evolution through space and time

PubMed Central

2018-01-01

Understanding Earth surface responses in terms of sediment dynamics to climatic variability and tectonics forcing is hindered by limited ability of current models to simulate long-term evolution of sediment transfer and associated morphological changes. This paper presents pyBadlands, an open-source python-based framework which computes over geological time (1) sediment transport from landmasses to coasts, (2) reworking of marine sediments by longshore currents and (3) development of coral reef systems. pyBadlands is cross-platform, distributed under the GPLv3 license and available on GitHub (http://github.com/badlands-model). Here, we describe the underlying physical assumptions behind the simulated processes and the main options already available in the numerical framework. Along with the source code, a list of hands-on examples is provided that illustrates the model capabilities. In addition, pre and post-processing classes have been built and are accessible as a companion toolbox which comprises a series of workflows to efficiently build, quantify and explore simulation input and output files. While the framework has been primarily designed for research, its simplicity of use and portability makes it a great tool for teaching purposes. PMID:29649301

Skeletal muscle and fetal alcohol spectrum disorder.

PubMed

Myrie, Semone B; Pinder, Mark A

2018-04-01

Skeletal muscle is critical for mobility and many metabolic functions integral to survival and long-term health. Alcohol can affect skeletal muscle physiology and metabolism, which will have immediate and long-term consequences on health. While skeletal muscle abnormalities, including morphological, biochemical, and functional impairments, are well-documented in adults that excessively consume alcohol, there is a scarcity of information about the skeletal muscle in the offspring prenatally exposed to alcohol ("prenatal alcohol exposure"; PAE). This minireview examines the available studies addressing skeletal muscle abnormalities due to PAE. Growth restriction, fetal alcohol myopathy, and abnormalities in the neuromuscular system, which contribute to deficits in locomotion, are some direct, immediate consequences of PAE on skeletal muscle morphology and function. Long-term health consequences of PAE-related skeletal abnormalities include impaired glucose metabolism in the skeletal muscle, resulting in glucose intolerance and insulin resistance, leading to an increased risk of type 2 diabetes. In general, there is limited information on the morphological, biochemical, and functional features of skeletal abnormalities in PAE offspring. There is a need to understand how PAE affects muscle growth and function at the cellular level during early development to improve the immediate and long-term health of offspring suffering from PAE.

Distributed Emulation in Support of Large Networks

DTIC Science & Technology

2016-06-01

Provider LTE Long Term Evolution MB Megabyte MIPS Microprocessor without Interlocked Pipeline Stages MRT Multi-Threaded Routing Toolkit NPS Naval...environment, modifications to a network, protocol, or model can be executed – and the effects measured – without affecting real-world users or services...produce their results when analyzing performance of Long Term Evolution ( LTE ) gateways [3]. Many research scenarios allow problems to be represented

On the effects of cluster density and concentration on the horizontal branch morphology - The origin of the blue tails

NASA Technical Reports Server (NTRS)

Fusi Pecci, F.; Ferraro, F. R.; Bellazzini, M.; Djorgovski, S.; Piotto, G.; Buonanno, R.

1993-01-01

Possible relationships between horizontal branch (HB) morphology in Galactic globular clusters and the cluster structure and dynamical evolution are investigated. New HB observables are defined and determined using a theoretical framework deduced from HB models. Data for 53 Galactic globular clusters are used to obtain correlations between the observables. It is found that the net length of the HB and the presence and extent of blue tails in particular are correlated with the cluster density and concentrations, in the sense of more concentrated or denser clusters having bluer and longer HB morphologies. This effect is especially strong for the intermediate metallicity clusters. Thus, the cluster environment can affect the stellar evolution leading to the HB and therefore the HB morphology. This result is interpreted in terms of an enhanced mass removal from the HB progenitors.

Iterative adaptive radiations of fossil canids show no evidence for diversity-dependent trait evolution.

PubMed

Slater, Graham J

2015-04-21

A long-standing hypothesis in adaptive radiation theory is that ecological opportunity constrains rates of phenotypic evolution, generating a burst of morphological disparity early in clade history. Empirical support for the early burst model is rare in comparative data, however. One possible reason for this lack of support is that most phylogenetic tests have focused on extant clades, neglecting information from fossil taxa. Here, I test for the expected signature of adaptive radiation using the outstanding 40-My fossil record of North American canids. Models implying time- and diversity-dependent rates of morphological evolution are strongly rejected for two ecologically important traits, body size and grinding area of the molar teeth. Instead, Ornstein-Uhlenbeck processes implying repeated, and sometimes rapid, attraction to distinct dietary adaptive peaks receive substantial support. Diversity-dependent rates of morphological evolution seem uncommon in clades, such as canids, that exhibit a pattern of replicated adaptive radiation. Instead, these clades might best be thought of as deterministic radiations in constrained Simpsonian subzones of a major adaptive zone. Support for adaptive peak models may be diagnostic of subzonal radiations. It remains to be seen whether early burst or ecological opportunity models can explain broader adaptive radiations, such as the evolution of higher taxa.

Evidence for the involvement of Globosa-like gene duplications and expression divergence in the evolution of floral morphology in the Zingiberales.

PubMed

Bartlett, Madelaine E; Specht, Chelsea D

2010-07-01

*The MADS box transcription factor family has long been identified as an important contributor to the control of floral development. It is often hypothesized that the evolution of floral development across angiosperms and within specific lineages may occur as a result of duplication, functional diversification, and changes in regulation of MADS box genes. Here we examine the role of Globosa (GLO)-like genes, members of the B-class MADS box gene lineage, in the evolution of floral development within the monocot order Zingiberales. *We assessed changes in perianth and stamen whorl morphology in a phylogenetic framework. We identified GLO homologs (ZinGLO1-4) from 50 Zingiberales species and investigated the evolution of this gene lineage. Expression of two GLO homologs was assessed in Costus spicatus and Musa basjoo. *Based on the phylogenetic data and expression results, we propose several family-specific losses and gains of GLO homologs that appear to be associated with key morphological changes. The GLO-like gene lineage has diversified concomitant with the evolution of the dimorphic perianth and the staminodial labellum. *Duplications and expression divergence within the GLO-like gene lineage may have played a role in floral diversification in the Zingiberales.

Iterative adaptive radiations of fossil canids show no evidence for diversity-dependent trait evolution

NASA Astrophysics Data System (ADS)

Slater, Graham J.

2015-04-01

A long-standing hypothesis in adaptive radiation theory is that ecological opportunity constrains rates of phenotypic evolution, generating a burst of morphological disparity early in clade history. Empirical support for the early burst model is rare in comparative data, however. One possible reason for this lack of support is that most phylogenetic tests have focused on extant clades, neglecting information from fossil taxa. Here, I test for the expected signature of adaptive radiation using the outstanding 40-My fossil record of North American canids. Models implying time- and diversity-dependent rates of morphological evolution are strongly rejected for two ecologically important traits, body size and grinding area of the molar teeth. Instead, Ornstein-Uhlenbeck processes implying repeated, and sometimes rapid, attraction to distinct dietary adaptive peaks receive substantial support. Diversity-dependent rates of morphological evolution seem uncommon in clades, such as canids, that exhibit a pattern of replicated adaptive radiation. Instead, these clades might best be thought of as deterministic radiations in constrained Simpsonian subzones of a major adaptive zone. Support for adaptive peak models may be diagnostic of subzonal radiations. It remains to be seen whether early burst or ecological opportunity models can explain broader adaptive radiations, such as the evolution of higher taxa.

Chaos and unpredictability in evolution.

PubMed

Doebeli, Michael; Ispolatov, Iaroslav

2014-05-01

The possibility of complicated dynamic behavior driven by nonlinear feedbacks in dynamical systems has revolutionized science in the latter part of the last century. Yet despite examples of complicated frequency dynamics, the possibility of long-term evolutionary chaos is rarely considered. The concept of "survival of the fittest" is central to much evolutionary thinking and embodies a perspective of evolution as a directional optimization process exhibiting simple, predictable dynamics. This perspective is adequate for simple scenarios, when frequency-independent selection acts on scalar phenotypes. However, in most organisms many phenotypic properties combine in complicated ways to determine ecological interactions, and hence frequency-dependent selection. Therefore, it is natural to consider models for evolutionary dynamics generated by frequency-dependent selection acting simultaneously on many different phenotypes. Here we show that complicated, chaotic dynamics of long-term evolutionary trajectories in phenotype space is very common in a large class of such models when the dimension of phenotype space is large, and when there are selective interactions between the phenotypic components. Our results suggest that the perspective of evolution as a process with simple, predictable dynamics covers only a small fragment of long-term evolution. © 2014 The Author(s). Evolution © 2014 The Society for the Study of Evolution.

Extinction Events Can Accelerate Evolution

PubMed Central

Lehman, Joel; Miikkulainen, Risto

2015-01-01

Extinction events impact the trajectory of biological evolution significantly. They are often viewed as upheavals to the evolutionary process. In contrast, this paper supports the hypothesis that although they are unpredictably destructive, extinction events may in the long term accelerate evolution by increasing evolvability. In particular, if extinction events extinguish indiscriminately many ways of life, indirectly they may select for the ability to expand rapidly through vacated niches. Lineages with such an ability are more likely to persist through multiple extinctions. Lending computational support for this hypothesis, this paper shows how increased evolvability will result from simulated extinction events in two computational models of evolved behavior. The conclusion is that although they are destructive in the short term, extinction events may make evolution more prolific in the long term. PMID:26266804

Long-term dynamics of adaptive evolution in a globally important phytoplankton species to ocean acidification

PubMed Central

Schlüter, Lothar; Lohbeck, Kai T.; Gröger, Joachim P.; Riebesell, Ulf; Reusch, Thorsten B. H.

2016-01-01

Marine phytoplankton may adapt to ocean change, such as acidification or warming, because of their large population sizes and short generation times. Long-term adaptation to novel environments is a dynamic process, and phenotypic change can take place thousands of generations after exposure to novel conditions. We conducted a long-term evolution experiment (4 years = 2100 generations), starting with a single clone of the abundant and widespread coccolithophore Emiliania huxleyi exposed to three different CO2 levels simulating ocean acidification (OA). Growth rates as a proxy for Darwinian fitness increased only moderately under both levels of OA [+3.4% and +4.8%, respectively, at 1100 and 2200 μatm partial pressure of CO2 (Pco2)] relative to control treatments (ambient CO2, 400 μatm). Long-term adaptation to OA was complex, and initial phenotypic responses of ecologically important traits were later reverted. The biogeochemically important trait of calcification, in particular, that had initially been restored within the first year of evolution was later reduced to levels lower than the performance of nonadapted populations under OA. Calcification was not constitutively lost but returned to control treatment levels when high CO2–adapted isolates were transferred back to present-day control CO2 conditions. Selection under elevated CO2 exacerbated a general decrease of cell sizes under long-term laboratory evolution. Our results show that phytoplankton may evolve complex phenotypic plasticity that can affect biogeochemically important traits, such as calcification. Adaptive evolution may play out over longer time scales (>1 year) in an unforeseen way under future ocean conditions that cannot be predicted from initial adaptation responses. PMID:27419227

Historical evolution of a micro-tidal lagoon simulated by a 2-D schematic model

NASA Astrophysics Data System (ADS)

Bonaldo, D.; Di Silvio, G.

2013-11-01

Coastal transitional environments such as estuaries, coastal inlets and tidal lagoons are the result of the interaction of several exogenous forcing factors (e.g. tidal regime, local wind and wave climate, sea-level rise, sediment supply) many of which are, in principle, variable in time over historical and geological timescales. Besides the natural variability of the external constraints, human interventions in some components of the system can either directly or indirectly affect long-term sediment dynamics in the whole system. In this paper the evolution of a schematic tidal basin, with non-uniform sediments and subject to geological and anthropogenic processes, is reproduced by means of a two dimensional morphodynamic model and qualitatively compared to the events which historically took place in the Venice Lagoon during the last four centuries; the trend for the next 200 years is also investigated. In particular, the effect on both morphology and bottom composition of river diversion, jetty construction, human-induced subsidence and channel dredging are presented and discussed.

Evolutionary models of rotating dense stellar systems: challenges in software and hardware

NASA Astrophysics Data System (ADS)

Fiestas, Jose

2016-02-01

We present evolutionary models of rotating self-gravitating systems (e.g. globular clusters, galaxy cores). These models are characterized by the presence of initial axisymmetry due to rotation. Central black hole seeds are alternatively included in our models, and black hole growth due to consumption of stellar matter is simulated until the central potential dominates the kinematics in the core. Goal is to study the long-term evolution (~ Gyr) of relaxed dense stellar systems, which deviate from spherical symmetry, their morphology and final kinematics. With this purpose, we developed a 2D Fokker-Planck analytical code, which results we confirm by detailed N-Body techniques, applying a high performance code, developed for GPU machines. We compare our models to available observations of galactic rotating globular clusters, and conclude that initial rotation modifies significantly the shape and lifetime of these systems, and can not be neglected in studying the evolution of globular clusters, and the galaxy itself.

Temporal variations in the potential hydrological performance of extensive green roof systems

NASA Astrophysics Data System (ADS)

De-Ville, Simon; Menon, Manoj; Stovin, Virginia

2018-03-01

Existing literature provides contradictory information about variation in potential green roof hydrological performance over time. This study has evaluated a long-term hydrological monitoring record from a series of extensive green roof test beds to identify long-term evolutions and sub-annual (seasonal) variations in potential hydrological performance. Monitoring of nine differently-configured extensive green roof test beds took place over a period of 6 years in Sheffield, UK. Long-term evolutions and sub-annual trends in maximum potential retention performance were identified through physical monitoring of substrate field capacity over time. An independent evaluation of temporal variations in detention performance was undertaken through the fitting of reservoir-routing model parameters. Aggregation of the resulting retention and detention variations permitted the prediction of extensive green roof hydrological performance in response to a 1-in-30-year 1-h summer design storm for Sheffield, UK, which facilitated the comparison of multi and sub-annual hydrological performance variations. Sub-annual (seasonal) variation was found to be significantly greater than long-term evolution. Potential retention performance increased by up to 12% after 5-years, whilst the maximum sub-annual variation in potential retention was 27%. For vegetated roof configurations, a 4% long-term improvement was observed for detention performance, compared to a maximum 63% sub-annual variation. Consistent long-term reductions in detention performance were observed in unvegetated roof configurations, with a non-standard expanded-clay substrate experiencing a 45% reduction in peak attenuation over 5-years. Conventional roof configurations exhibit stable long-term hydrological performance, but are nonetheless subject to sub-annual variation.

Effect of simple shear flow on photosynthesis rate and morphology of micro algae

NASA Astrophysics Data System (ADS)

Mitsuhashi, S.; Fujimoto, M.; Muramatsu, H.; Tanishita, K.

The convective motion of micro algal suspension gives an advantageous effect on the photosynthetic rate in the bioreactor, however, the nature of convective effect on the photosynthesis has not been fully understood. The propose of this study concerns the nature of photosynthetic rate in a well-defined hydrodynamic shear flow of Spirulina platensis suspension, generated in a double rotating coaxial cylinders. The double rotating coaxial cylinders was installed in the incubator chamber with the controlled illumination intensity and temperature. Two kind of experiments, short and long term experiments, were performed to evaluate the direct effect of shear flow on the photosynthetic rate. The short term experiment indicates that the simple shear flow enables to augment the photosynthesis of Spirulina suspension and simultaneously causes the cell destruction due to the excessive shear stress. The long term experiment for 100 hours reveals that the growth rate and the morphology of Spirulina is sensitive to the external fluid mechanical stimulus. The long term application of mechanical stress on the algae may result in the adaptation of the photosynthetic function and morphology.

Evolution of the Corrosion Morphology on AZ31B Tracked Electrochemically and by In Situ Microscopy in Chloride-Containing Media

NASA Astrophysics Data System (ADS)

Melia, M. A.; Cain, T. W.; Briglia, B. F.; Scully, J. R.; Fitz-Gerald, J. M.

2017-11-01

The evolution of open-circuit corrosion morphology as a function of immersion time for Mg alloy AZ31B in 0.6-M NaCl solution was investigated. Real-time optical microscopy accompanied by simultaneous electrochemical characterization was used to characterize the filiform corrosion (FFC) of AZ31B. Specifically, the behavior of propagating corrosion filaments on the metal surface was observed, and correlations among polarization resistance, filament propagation rates, open-circuit potential, and active coverage of local corrosion sites were revealed. Three distinct stages of corrosion were observed in 0.6-M NaCl. An initial passive region, during which a slow potential rise occurred (termed stage I), a second FFC region (termed stage II) with shallow penetrating, distinct filaments, and a final FFC region (termed stage III) with deeper penetrating filaments, aligned to form a linear front. The electrochemical properties of each stage are discussed, providing insights into the penetration rates and corrosion model.

Beach and dune building processes: Linking nearshore to backshore and events to decades

NASA Astrophysics Data System (ADS)

Ruggiero, P.; Cohn, N.; Hacker, S.; Moore, L. J.; Duran Vinent, O.; de Vries, S.

2016-12-01

Due to the wide range of complex processes in the active coastal zone, individual studies have tended to focus on specific time scales (e.g., event-scale erosion) and/or specific morphological units, (e.g., the nearshore bar zone). As a result, the wet and dry portions of the beach have typically been studied independently. In nature, however, the nearshore and the backshore are highly interdependent and understanding the linkages between these units is critical to characterizing coastal evolution. For example, during periods of intense storm conditions (e.g., major El Niños on the U.S. West Coast), elevated water levels and large waves commonly lead to the scarping, or even destruction, of wind formed dunes. Given that dunes act as a form of green infrastructure and are a major asset to the coastal zone, it is critical to be able to forecast backshore evolution. Existing models for backshore recovery, however, are typically based on local historical trends rather than a mechanistic understanding including onshore sediment transport, dune growth, and the role of ecomorphodynamic feedbacks. Therefore, most likely as a result of the historical academic separation of wave and wind driven processes, geomorphology and ecology, and short- and long-term processes, our understanding of beach and dune building is still in its infancy. Here we describe SEDEX2, the Sandbar-aEolian-Dune EXchange Experiment, a comprehensive summer 2016 field campaign in which measurements of waves, currents, wind, dune ecology, subaqueous and aeolian sediment transport, and subsequent morphological changes were collected along the Long Beach Peninsula, WA. The data collected during the six-week experiment are contextualized by nearly two decades of focused research on the seasonal-centennial scale evolution of this rapidly prograding system. The findings of this study, actively bridging across disciplines, morphometric units, and temporal scales are informing conceptual and numerical models of beach-dune interaction and helping to improve management of vital backshore resources.

Canine tooth size and fitness in male mandrills (Mandrillus sphinx).

PubMed

Leigh, Steven R; Setchell, Joanna M; Charpentier, Marie; Knapp, Leslie A; Wickings, E Jean

2008-07-01

Sexual selection theory explains the evolution of exaggerated male morphologies and weaponry, but the fitness consequences of developmental and age-related changes in these features remain poorly understood. This long-term study of mandrill monkeys (Mandrillus sphinx) demonstrates how age-related changes in canine tooth weaponry and adult canine size correlate closely with male lifetime reproductive success. Combining long-term demographic and morphometric data reveals that male fitness covaries simply and directly with canine ontogeny, adult maximum size, and wear. However, fitness is largely independent of other somatometrics. Male mandrills sire offspring almost exclusively when their canines exceed approximately 30 mm, or two-thirds of average adult value (45 mm). Moreover, sires have larger canines than nonsires. The tooth diminishes through wear as animals age, corresponding with, and perhaps influencing, reproductive senescence. These factors combine to constrain male reproductive opportunities to a brief timespan, defined by the period of maximum canine length. Sexually-selected weaponry, especially when it is nonrenewable like the primate canine tooth, is intimately tied to the male life course. Our analyses of this extremely dimorphic species indicate that sexual selection is closely intertwined with growth, development, and aging, pointing to new directions for sexual selection theory. Moreover, the primate canine tooth has potential as a simple mammalian system for testing genetically-based models of aging. Finally, the tooth may record details of life histories in fossil primates, especially when sexual selection has played a role in the evolution of dimorphism.

TrOn: an anatomical ontology for the beetle Tribolium castaneum.

PubMed

Dönitz, Jürgen; Grossmann, Daniela; Schild, Inga; Schmitt-Engel, Christian; Bradler, Sven; Prpic, Nikola-Michael; Bucher, Gregor

2013-01-01

In a morphological ontology the expert's knowledge is represented in terms, which describe morphological structures and how these structures relate to each other. With the assistance of ontologies this expert knowledge is made processable by machines, through a formal and standardized representation of terms and their relations to each other. The red flour beetle Tribolium castaneum, a representative of the most species rich animal taxon on earth (the Coleoptera), is an emerging model organism for development, evolution, physiology, and pest control. In order to foster Tribolium research, we have initiated the Tribolium Ontology (TrOn), which describes the morphology of the red flour beetle. The content of this ontology comprises so far most external morphological structures as well as some internal ones. All modeled structures are consistently annotated for the developmental stages larva, pupa and adult. In TrOn all terms are grouped into three categories: Generic terms represent morphological structures, which are independent of a developmental stage. In contrast, downstream of such terms are concrete terms which stand for a dissectible structure of a beetle at a specific life stage. Finally, there are mixed terms describing structures that are only found at one developmental stage. These terms combine the characteristics of generic and concrete terms with features of both. These annotation principles take into account the changing morphology of the beetle during development and provide generic terms to be used in applications or for cross linking with other ontologies and data resources. We use the ontology for implementing an intuitive search function at the electronic iBeetle-Base, which stores morphological defects found in a genome wide RNA interference (RNAi) screen. The ontology is available for download at http://ibeetle-base.uni-goettingen.de.

Impact of surrounding environment evolution on long-term gas flux measurements in a temperate mixed forest

NASA Astrophysics Data System (ADS)

Hurdebise, Quentin; Rixen, Toma; De Ligne, Anne; Vincke, Caroline; Heinesch, Bernard; Aubinet, Marc

2016-04-01

With the development of eddy covariance networks like Fluxnet, ICOS or NEON, long-term data series of carbon dioxide, water vapor and other gas exchanges between terrestrial ecosystems and atmosphere will become more and more numerous. However, long-term analyses of such exchanges require a good understanding of measurement conditions during the investigated period. Independently of climate drivers, measurements may indeed be influenced by measurement conditions themselves subjected to long-term variability due to vegetation growth or set-up changes. The present research refers to the Vielsalm Terrestrial Observatory (VTO) where fluxes of momentum, carbon dioxide, latent and sensible heat have been continuously measured by eddy covariance during twenty years. VTO is an ICOS site installed in a mixed forest (beech, silver fir, Douglas fir, Norway spruce) in the Belgian Ardennes. A multidisciplinary approach was developed in order to investigate the spatial and temporal evolution of several site characteristics: -displacement height (d) and relative measurement height (z-d) were determined using a spectral approach that compared observed and theoretical cospectra; -turbulence statistics were analyzed in the context of Monin-Obukhov similarity theory; -tree height during the measurement period was obtained by combining tree height inventories, a LIDAR survey and tree growth models; -measurement footprint was determined by using a footprint model. A good agreement was found between the three first approaches. Results show notably that z-d was subjected to both temporal and spatial evolution. Temporal evolution resulted from continuous tree growth as well as from a tower raise, achieved in 2009. Spatial evolution, due to canopy heterogeneity, was also observed. The impacts of these changes on measurements are investigated. In particular, it was shown that they affect measurement footprint, flux spectral corrections and flux quality. All these effects must be taken into consideration in order to disentangle long-term flux evolutions due to climate or phenology from changes resulting from measurement set-up changes.

Helium runaways in white dwarfs

NASA Technical Reports Server (NTRS)

Taam, R. E.

1979-01-01

The long term evolution of an accreting carbon white dwarf was studied from the onset of accretion to the ignition of helium. The variations in the details of the helium shell flash examined with respect to variations in mass accretion rate. For intermediate rates the helium flash is potentially explosive whereas for high rates the shell flash is relatively weak. The results are discussed in the context of the long term evolution of novae.

Integration of ambient seismic noise monitoring, displacement and meteorological measurements to infer the temperature-controlled long-term evolution of a complex prone-to-fall cliff

NASA Astrophysics Data System (ADS)

Colombero, C.; Baillet, L.; Comina, C.; Jongmans, D.; Larose, E.; Valentin, J.; Vinciguerra, S.

2018-06-01

Monitoring the temporal evolution of resonance frequencies and velocity changes detected from ambient seismic noise recordings can help in recognizing reversible and irreversible modifications within unstable rock volumes. With this aim, the long-term ambient seismic noise data set acquired at the potentially unstable cliff of Madonna delSasso (NW Italian Alps) was analysed in this study, using both spectral analysis and cross-correlation techniques. Noise results were integrated and compared with direct displacement measurements and meteorological data, to understand the long-term evolution of the cliff. No irreversible modifications in the stability of the site were detected over the monitored period. Conversely, daily and seasonal air temperature fluctuations were found to control resonance frequency values, amplitudes and directivities and to induce reversible velocity changes within the fractured rock mass. The immediate modification in the noise parameters due to temperature fluctuations was interpreted as the result of rock mass thermal expansion and contraction, inducing variations in the contact stiffness along the fractures isolating two unstable compartments. Differences with previous case studies were highlighted in the long-term evolution of noise spectral amplitudes and directivities, due to the complex 3-D fracture setting of the site and to the combined effects of the two unstable compartments.

Morphological evolution of Bi2Se3 nanocrystalline materials synthesized by microwave assisted solvothermal method

NASA Astrophysics Data System (ADS)

Bera, Sumit; Behera, P.; Mishra, A. K.; Krishnan, M.; Patidar, M. M.; Singh, D.; Gangrade, M.; Venkatesh, R.; Deshpande, U. P.; Phase, D. M.; Ganesan, V.

2018-04-01

Structural, morphological and spectroscopic properties of Bi2Se3 nanoparticles synthesized by microwave assisted solvothermal method were investigated systematically. A controlled synthesis of different morphologies by a small variation in synthesis procedure is demonstrated. Powder X-ray diffraction (XRD) confirmed the formation of single phase. Crystallite and particle size reductions were studied with XRD and AFM (Atomic Force Microscopy). Different morphologies such as hexagonal nanoflakes with cross section of around˜6µm, nanoflower and octahedral agglomerated crystals of nearly ˜60 nm size have been observed in scanning electron microscope while varying the microwave assisted synthesis procedures. A significant blue shift observed in diffuse reflectance spectroscopy evidences the energy gap tuning as a result of morphological evolution. The difference in morphology observed in this three fast, facile and scalable synthesis is advantageous for tuning the thermoelectric figure of merit and for probing the surface states of these topological insulators. Low temperature resistivity remains similar for all three variants depicting a 2D character as evidenced by a -lnT term of localization.

Altered Gene Regulation and Synaptic Morphology in "Drosophila" Learning and Memory Mutants

ERIC Educational Resources Information Center

Guan, Zhuo; Buhl, Lauren K.; Quinn, William G.; Littleton, J. Troy

2011-01-01

Genetic studies in "Drosophila" have revealed two separable long-term memory pathways defined as anesthesia-resistant memory (ARM) and long-lasting long-term memory (LLTM). ARM is disrupted in "radish" ("rsh") mutants, whereas LLTM requires CREB-dependent protein synthesis. Although the downstream effectors of ARM and LLTM are distinct, pathways…

Evolution of the structure and function of the vertebrate tongue

PubMed Central

Iwasaki, Shin-ichi

2002-01-01

Abstract Studies of the comparative morphology of the tongues of living vertebrates have revealed how variations in the morphology and function of the organ might be related to evolutional events. The tongue, which plays a very important role in food intake by vertebrates, exhibits significant morphological variations that appear to represent adaptation to the current environmental conditions of each respective habitat. This review examines the fundamental importance of morphology in the evolution of the vertebrate tongue, focusing on the origin of the tongue and on the relationship between morphology and environmental conditions. Tongues of various extant vertebrates, including those of amphibians, reptiles, birds and mammals, were analysed in terms of gross anatomy and microanatomy by light microscopy and by scanning and transmission electron microscopy. Comparisons of tongue morphology revealed a relationship between changes in the appearance of the tongue and changes in habitat, from a freshwater environment to a terrestrial environment, as well as a relationship between the extent of keratinization of the lingual epithelium and the transition from a moist or wet environment to a dry environment. The lingual epithelium of amphibians is devoid of keratinization while that of reptilians is keratinized to different extents. Reptiles live in a variety of habitats, from seawater to regions of high temperature and very high or very low humidity. Keratinization of the lingual epithelium is considered to have been acquired concomitantly with the evolution of amniotes. The variations in the extent of keratinization of the lingual epithelium, which is observed between various amniotes, appear to be secondary, reflecting the environmental conditions of different species. PMID:12171472

Evolution of the structure and function of the vertebrate tongue.

PubMed

Iwasaki, Shin-ichi

2002-07-01

Studies of the comparative morphology of the tongues of living vertebrates have revealed how variations in the morphology and function of the organ might be related to evolutional events. The tongue, which plays a very important role in food intake by vertebrates, exhibits significant morphological variations that appear to represent adaptation to the current environmental conditions of each respective habitat. This review examines the fundamental importance of morphology in the evolution of the vertebrate tongue, focusing on the origin of the tongue and on the relationship between morphology and environmental conditions. Tongues of various extant vertebrates, including those of amphibians, reptiles, birds and mammals, were analysed in terms of gross anatomy and microanatomy by light microscopy and by scanning and transmission electron microscopy. Comparisons of tongue morphology revealed a relationship between changes in the appearance of the tongue and changes in habitat, from a freshwater environment to a terrestrial environment, as well as a relationship between the extent of keratinization of the lingual epithelium and the transition from a moist or wet environment to a dry environment. The lingual epithelium of amphibians is devoid of keratinization while that of reptilians is keratinized to different extents. Reptiles live in a variety of habitats, from seawater to regions of high temperature and very high or very low humidity. Keratinization of the lingual epithelium is considered to have been acquired concomitantly with the evolution of amniotes. The variations in the extent of keratinization of the lingual epithelium, which is observed between various amniotes, appear to be secondary, reflecting the environmental conditions of different species.

Morphological evolution of X-ray flare structures from the rise through the decay phase. [Skylab study of solar flares

NASA Technical Reports Server (NTRS)

Kahler, S. W.; Krieger, A. S.; Vaiana, G. S.

1975-01-01

The morphological evolution of 12 solar X-ray subflares from onset through the decay phase has been studied using photographic X-ray images obtained from Skylab. The spatial configurations are found to vary widely from flare to flare, but they appear to be composed of two basic kinds of structures. The first, termed 'X-ray kernels', are brightest during the rise phase; the second, looplike structures, appear during the maximum and decay phases of the event. The X-ray kernels are small pointlike structures which may be related to the nonthermal phases of flares.

How does a tidal embayment morphodynamically react on sea level rise?

NASA Astrophysics Data System (ADS)

van der Wegen, Mick

2010-05-01

Conditions for (assumed) equilibrium in tidal embayments have been studied extensively in the past years with morphodynamic 1D models (Van Dongeren and De Vriend, 1994; Schuttelaars and de Swart, 1996, 2000; Lanzoni and Seminara, 2002) and 2D models (Hibma et al. [2003], Van der Wegen and Roelvink [2008]) Van der Wegen et al 2008). The current research addresses the impact of sea level rise on tidal embayments. Although effects of sea level rise may only become apparent after decades, the character of the embayment can change considerably. Examples are the (dis)appearance or re-allocation of intertidal flats, increased tidal resonance, shift from sediment export to import, deepening of channel area and other related (ecological) parameters. The research applies a 2D morphodynamic model (Delft3D) in an idealized environment. The model is based on the 2 D shallow water equations, the Engelund -Hansen transport formula and includes bed slope effects, drying and flooding procedures and an advanced morphodynamic update scheme (Roelvink 2006). The initial condition of the bathymetry is generated by 3000 years of morphodynamic calculations in a 80 km long and 2.5 km wide rectangular tidal embayment under constant M2 tidal forcing conditions (Van der Wegen and Roelvink [2008]). After this period sea level rise gradually developing towards a rate of 0.4 m/century is added to the boundary conditions. Model results describe development towards less intertidal area and a transition from an exporting system to a importing system. Model results are evaluated in terms of M2, M4 and M6 tidal constituents as well as against Vs/Vc (shoal volume over channel volume) versus a/h (amplitude over water depth) relationship as proposed by Friedrichs and Aubrey (1988). Although the model describes morphodynamic development in a strongly idealized environment the results can provide an excellent tool to systematically study the impact of sea level rise in tidal embayments as well as the time scales of dominant underlying resulting transport mechanisms and processes. DISSANAYAKE, D.M.P.K; RANASINGHE, R. and ROELVINK, J.A., 2009. Effect of Sea Level Rise in tidal inlet evolution: a numerical modelling approach. Journal of Coastal Research, SI 56 (Proceedings of the 10th International Coastal Symposium), pg - pg. Lisbon, Portugal. Friedrichs, C. T., and D. G. Aubrey (1988), Non-linear tidal distortion in shallow well mixed estuaries: A synthesis, Estuarine Coastal Shelf Sci.,27, 521- 545, doi:10.1016/0272-7714(88)90082-0. Hibma, A., H.M. Schuttelaars, and H. J. de Vriend (2003b), Initial formation and long-term evolution of channel-shoal patterns in estuaries, in Proc. 3rd RCEM conf.edited by A. Sánchez -Acrilla and A. Bateman, pp. 740-760, IAHR., Barcelona, Spain. Lanzoni, S., and G. Seminara (2002), Long-term evolution and morphodynamic equilibrium of tidal channels, J. Geophys. Res., 107(C1), 3001, doi:10.1029/2000JC000468. Roelvink, J. A. (2006), Coastal morphodynamic evolution techniques, J. Coastal Eng., 53, 177-187. Schuttelaars, H. M., and H. E. De Swart (1996), An idealized long termmorphodynamic model of a tidal embayment, Eur. J. Mech. B Fluids, 15(1), 55-80. Schuttelaars, H. M., and H. E. De Swart (2000), Multiple morphodynamic equilibria in tidal embayments, J. Geophys. Res., 105(C10), 24,105 - 24,118. Van Dongeren, A. D., and H. J. De Vriend (1994), A model of morphological behaviour of tidal basins, Coastal Eng., 22, 287- 310. van der Wegen, M., and J. A. Roelvink (2008), Long-term morphodynamic evolution of a tidal embayment using a twodimensional, process-based model, J. Geophys. Res., 113, C03016, doi:10.1029/2006JC003983 van der Wegen, M., Z. B. Wang, H. H. G. Savenije, and J. A. Roelvink (2008), Long-term morphodynamic evolution and energy dissipation in a coastal plain, tidal embayment, J. Geophys. Res., 113, F03001, doi:10.1029/2007JF000898

Alternate pathways of body shape evolution translate into common patterns of locomotor evolution in two clades of lizards.

PubMed

Bergmann, Philip J; Irschick, Duncan J

2010-06-01

Body shape has a fundamental impact on organismal function, but it is unknown how functional morphology and locomotor performance and kinematics relate across a diverse array of body shapes. We showed that although patterns of body shape evolution differed considerably between lizards of the Phrynosomatinae and Lerista, patterns of locomotor evolution coincided between clades. Specifically, we found that the phrynosomatines evolved a stocky phenotype through body widening and limb shortening, whereas Lerista evolved elongation through body lengthening and limb shortening. In both clades, relative limb length played a key role in locomotor evolution and kinematic strategies, with long-limbed species moving faster and taking longer strides. In Lerista, the body axis also influenced locomotor evolution. Similar patterns of locomotor evolution were likely due to constraints on how the body can move. However, these common patterns of locomotor evolution between the two clades resulted in different kinematic strategies and levels of performance among species because of their morphological differences. Furthermore, we found no evidence that distinct body shapes are adaptations to different substrates, as locomotor kinematics did not change on loose or solid substrates. Our findings illustrate the importance of studying kinematics to understand the mechanisms of locomotor evolution and phenotype-function relationships.

Estimating long-term evolution of fine sediment budget in the Iffezheim reservoir using a simplified method based on classification of boundary conditions

NASA Astrophysics Data System (ADS)

Zhang, Qing; Hillebrand, Gudrun; Hoffmann, Thomas; Hinkelmann, Reinhard

2017-04-01

The Iffezheim reservoir is the last of a series of reservoirs on the Upper Rhine in Germany. Since its construction in 1977, approximately 115,000 m3 of fine sediments accumulate annually in the weir channel (WSA Freiburg, 2011). In order to obtain detailed information about the space-time development of the topography, the riverbed evolution was measured using echo sounding by the German Federal Waterways and Shipping Administration (WSV). 37 sets of sounding data, which have been obtained between July 2000 and February 2011, were used in this research. In a previous work, the morphodynamic processes in the Iffezheim reservoir were investigated using a high-resolution 3D model. The 3D computational fluid dynamic software SSIIM II (Olsen, 2014) was used for this purpose (Zhang et al., 2015). The model was calibrated using field measurements. A computational time of 14.5 hours, using 24 cores of a 2.4 GHz reference computer, was needed for simulating a period of three months on a grid of 238,013 cells. Thus, the long-term (e.g. 30 years) simulation of morphodynamics of the fine sediment budget in the Iffezheim reservoir with this model is not feasible. A low complexity approach of "classification of the boundary conditions of discharge and suspended sediment concentration" was applied in this research for a long-term numerical simulation. The basic idea of the approach is to replace instationary or quasi-steady simulations of deposition by a limited series of stationary ones. For these, daily volume changes were calculated considering representative discharge and concentration. Representative boundary conditions were determined by subdividing time series of discharge and concentration into classes and using central values per class. The amount of the deposition in the reservoir for a certain period can then be obtained by adding up the calculated daily depositions. This approach was applied to 10 short-term periods, between two successive echo sounding measurements, and 2 longer ones, which include several short-term periods. Short-term periods spread from 1 to 3 months, whereas long-term periods indicate 2 and 5 years. The simulation results showed an acceptable agreement with the measurements. It was also found that the long-term periods had less deviation to the measurements than the short ones. This simplified method exhibited clear savings in computational time compared to the instationary simulations; in this case only 3 hours of computational time were needed for 5 years simulation period using the reference computer mentioned above. Further research is needed with respect to the limits of this linear approach, i.e. with respect to the frequency with which the set of steady simulations has to be updated due to significant changes in morphology and in turn in hydraulics. Yet, the preliminary results are promising, suggesting that the developed approach is very suitable for a long-term simulation of riverbed evolution. REFERENCES Olsen, N.R.B. 2014. A three-dimensional numerical model for simulation of sediment movements in water intakes with multiblock option. Version 1 and 2. User's manual. Department of Hydraulic and Environmental Engineering. The Norwegian University of Science and Technology, Trondheim, Norway. Wasser- und Schifffahrtsamt (WSA) Freiburg. 2011. Sachstandsbericht oberer Wehrkanal Staustufe Iffezheim. Technical report - Upper weir channel of the Iffezheim hydropower reservoir. Zhang, Q., Hillebrand, G. Moser, H. & Hinkelmann, R. 2015. Simulation of non-uniform sediment transport in a German Reservoir with the SSIIM Model and sensitivity analysis. Proceedings of the 36th IAHR World Congress. The Hague, The Netherland.

Carbonate landscapes evolution: Insights from 36Cl

NASA Astrophysics Data System (ADS)

Godard, Vincent; Thomas, Franck; Ollivier, Vincent; Bellier, Olivier; Shabanian, Esmaeil; Miramont, Cécile; Fleury, Jules; Benedetti, Lucilla; Guillou, Valéry; Aster Team

2017-04-01

Carbonate landscapes cover a significant fraction of the Earth surface, but their long-term dynamics is still poorly understood. When comparing with the situation in areas underlain by quartz-rich lithologies, where the routine use of 10Be-derived denudation rates has delivered fundamental insights on landscape evolution processes, this knowledge gap is particularly notable. Recent advances in the measurement of 36Cl and better understanding of its production pathways has opened the way to the development of a similar physically-based and quantitative analysis of landscape evolution in carbonate settings. However, beyond these methodological considerations, we still face fundamental geomorphological open questions, as for example the assessment of the importance of congruent carbonate dissolution in long-wavelength topographic evolution. Such unresolved problems concerning the relative importance of physical and chemical weathering processes lead to question the applicability of standard slope-dependent Geomorphic Transport Laws in carbonate settings. These issues have been addressed studying the geomorphological evolution of selected limestone ranges in Provence, SE France, where 36Cl concentration measurements in bedrock and stream sediment samples allow constraining denudation over 10 ka time-scale. We first identify a significant denudation contrast between the summit surface and the flanks of the ranges, pointing to a substantial contribution of gravity-driven processes to the landscape evolution, in addition to dissolution. Furthermore, a detailed analysis of the relationships between hillslope morphology and hilltop denudation allow to identify a fundamental transition between two regimes: (1) a dynamics where hillslope evolution is controlled by linear diffusive downslope regolith transport; and, (2) a domain where denudation is limited by the rate at which physical and chemical weathering processes can produce clasts and lower the hilltop. Such an abrupt transition toward a weathering-limited dynamics may prevent hillslope denudation from balancing the rate of base level fall imposed by the river network and could potentially explain the development of high local relief observed in many Mediterranean carbonate landscapes.

Early development and replacement of the stickleback dentition

PubMed Central

Ellis, Nicholas A.; Donde, Nikunj N.; Miller, Craig T.

2017-01-01

Teeth have long served as a model system to study basic questions about vertebrate organogenesis, morphogenesis, and evolution. In non-mammalian vertebrates, teeth typically regenerate throughout adult life. Fish have evolved a tremendous diversity in dental patterning in both their oral and pharyngeal dentitions, offering numerous opportunities to study how morphology develops, regenerates, and evolves in different lineages. Threespine stickleback fish (Gasterosteus aculeatus) have emerged as a new system to study how morphology evolves, and provide a particularly powerful system to study the development and evolution of dental morphology. Here we describe the oral and pharyngeal dentitions of stickleback fish, providing additional morphological, histological, and molecular evidence for homology of oral and pharyngeal teeth. Focusing on the ventral pharyngeal dentition in a dense developmental time course of lab-reared fish, we describe the temporal and spatial consensus sequence of early tooth formation. Early in development, this sequence is highly stereotypical and consists of seventeen primary teeth forming the early tooth field, followed by the first tooth replacement event. Comparing this detailed morphological and ontogenetic sequence to that described in other fish reveals that major changes to how dental morphology arises and regenerates have evolved across different fish lineages. PMID:27145214

Evolution of collaboration within the US long term ecological research network

Treesearch

Jeffrey C. Johnson; Robert R. Christian; James W. Brunt; Caleb R. Hickman; Robert B. Waide

2010-01-01

The US Long Term Ecological Research (LTER) program began in 1980 with the mission of addressing long-term ecological phenomena through research at individual sites, as well as comparative and synthetic activities among sites. We applied network science measures to assess how the LTER program has achieved its mission using intersite publications as the measure of...

Evolution of the cosmic web

NASA Astrophysics Data System (ADS)

Cautun, Marius; van de Weygaert, Rien; Jones, Bernard J. T.; Frenk, Carlos S.

2014-07-01

The cosmic web is the largest scale manifestation of the anisotropic gravitational collapse of matter. It represents the transitional stage between linear and non-linear structures and contains easily accessible information about the early phases of structure formation processes. Here we investigate the characteristics and the time evolution of morphological components. Our analysis involves the application of the NEXUS Multiscale Morphology Filter technique, predominantly its NEXUS+ version, to high resolution and large volume cosmological simulations. We quantify the cosmic web components in terms of their mass and volume content, their density distribution and halo populations. We employ new analysis techniques to determine the spatial extent of filaments and sheets, like their total length and local width. This analysis identifies clusters and filaments as the most prominent components of the web. In contrast, while voids and sheets take most of the volume, they correspond to underdense environments and are devoid of group-sized and more massive haloes. At early times the cosmos is dominated by tenuous filaments and sheets, which, during subsequent evolution, merge together, such that the present-day web is dominated by fewer, but much more massive, structures. The analysis of the mass transport between environments clearly shows how matter flows from voids into walls, and then via filaments into cluster regions, which form the nodes of the cosmic web. We also study the properties of individual filamentary branches, to find long, almost straight, filaments extending to distances larger than 100 h-1 Mpc. These constitute the bridges between massive clusters, which seem to form along approximatively straight lines.

Morphology of fluvial levee series along a river under human influence, Maros River, Hungary

NASA Astrophysics Data System (ADS)

Kiss, Tímea; Balogh, Márton; Fiala, Károly; Sipos, György

2018-02-01

The development and morphometry of fluvial levees reflect the connection between channel and overbank processes, which can be altered by various human activities. The aims of this study are to investigate the morphology and spatial characteristics of fluvial levees and evaluate the role of some local- and catchment-scale human activities on their medium-term (150 years) development. This study applies LiDAR data along a 53-km-long reach of the Maros River in Hungary. Six fluvial levee types are identified based on the beginning and end of their evolution. These levee types were generated by local nineteenth century channel regulation works (cutoffs) and mid-twentieth century channel narrowing, which was caused by gravel mining and water impoundment in the upstream sections. However, other human activities also influenced the development of active fluvial levees because their horizontal evolution could have been limited by embanked flood-protection levees or the widening of low-lying floodplain benches that were generated by channel narrowing. Additionally, revetment constructions influenced their vertical parameters as higher fluvial levees developed along the fixed banks. Generally, the older active fluvial levees are wider, while the younger active levees are narrower with steeper slopes but not always lower. On the low-lying floodplain levels (benches), the youngest fluvial levees evolved quite rapidly and consist of coarser material. Currently, only 9.8- to 38-year return-period floods could cover the fluvial levees, contributing to their evolution. This fact and the development of fluvial levee series with two-three members reflect a gradual decoupling of the channel from the floodplain.

Asexual Reproduction Does Not Apparently Increase the Rate of Chromosomal Evolution: Karyotype Stability in Diploid and Triploid Clonal Hybrid Fish (Cobitis, Cypriniformes, Teleostei)

PubMed Central

Majtánová, Zuzana; Choleva, Lukáš; Symonová, Radka; Ráb, Petr; Kotusz, Jan; Pekárik, Ladislav; Janko, Karel

2016-01-01

Interspecific hybridization, polyploidization and transitions from sexuality to asexuality considerably affect organismal genomes. Especially the last mentioned process has been assumed to play a significant role in the initiation of chromosomal rearrangements, causing increased rates of karyotype evolution. We used cytogenetic analysis and molecular dating of cladogenetic events to compare the rate of changes of chromosome morphology and karyotype in asexually and sexually reproducing counterparts in European spined loach fish (Cobitis). We studied metaphases of three sexually reproducing species and their diploid and polyploid hybrid clones of different age of origin. The material includes artificial F1 hybrid strains, representatives of lineage originated in Holocene epoch, and also individuals of an oldest known age to date (roughly 0.37 MYA). Thereafter we applied GISH technique as a marker to differentiate parental chromosomal sets in hybrids. Although the sexual species accumulated remarkable chromosomal rearrangements after their speciation, we observed no differences in chromosome numbers and/or morphology among karyotypes of asexual hybrids. These hybrids possess chromosome sets originating from respective parental species with no cytogenetically detectable recombinations, suggesting their integrity even in a long term. The switch to asexual reproduction thus did not provoke any significant acceleration of the rate of chromosomal evolution in Cobitis. Asexual animals described in other case studies reproduce ameiotically, while Cobitis hybrids described here produce eggs likely through modified meiosis. Therefore, our findings indicate that the effect of asexuality on the rate of chromosomal change may be context-dependent rather than universal and related to particular type of asexual reproduction. PMID:26808475

Asexual Reproduction Does Not Apparently Increase the Rate of Chromosomal Evolution: Karyotype Stability in Diploid and Triploid Clonal Hybrid Fish (Cobitis, Cypriniformes, Teleostei).

PubMed

Majtánová, Zuzana; Choleva, Lukáš; Symonová, Radka; Ráb, Petr; Kotusz, Jan; Pekárik, Ladislav; Janko, Karel

2016-01-01

Interspecific hybridization, polyploidization and transitions from sexuality to asexuality considerably affect organismal genomes. Especially the last mentioned process has been assumed to play a significant role in the initiation of chromosomal rearrangements, causing increased rates of karyotype evolution. We used cytogenetic analysis and molecular dating of cladogenetic events to compare the rate of changes of chromosome morphology and karyotype in asexually and sexually reproducing counterparts in European spined loach fish (Cobitis). We studied metaphases of three sexually reproducing species and their diploid and polyploid hybrid clones of different age of origin. The material includes artificial F1 hybrid strains, representatives of lineage originated in Holocene epoch, and also individuals of an oldest known age to date (roughly 0.37 MYA). Thereafter we applied GISH technique as a marker to differentiate parental chromosomal sets in hybrids. Although the sexual species accumulated remarkable chromosomal rearrangements after their speciation, we observed no differences in chromosome numbers and/or morphology among karyotypes of asexual hybrids. These hybrids possess chromosome sets originating from respective parental species with no cytogenetically detectable recombinations, suggesting their integrity even in a long term. The switch to asexual reproduction thus did not provoke any significant acceleration of the rate of chromosomal evolution in Cobitis. Asexual animals described in other case studies reproduce ameiotically, while Cobitis hybrids described here produce eggs likely through modified meiosis. Therefore, our findings indicate that the effect of asexuality on the rate of chromosomal change may be context-dependent rather than universal and related to particular type of asexual reproduction.

The evolutionary history of Mimosa (Leguminosae): toward a phylogeny of the sensitive plants.

PubMed

Simon, Marcelo F; Grether, Rosaura; de Queiroz, Luciano P; Särkinen, Tiina E; Dutra, Valquíria F; Hughes, Colin E

2011-07-01

Large genera provide remarkable opportunities to investigate patterns of morphological evolution and historical biogeography in plants. A molecular phylogeny of the species-rich and morphologically and ecologically diverse genus Mimosa was generated to evaluate its infrageneric classification, reconstruct the evolution of a set of morphological characters, and establish the relationships of Old World species to the rest of the genus. We used trnD-trnT plastid sequences for 259 species of Mimosa (ca. 50% of the total) to reconstruct the phylogeny of the genus. Six morphological characters (petiolar nectary, inflorescence type, number of stamens, number of petals, pollen type, and seismonasty) were optimized onto the molecular tree. Mimosa was recovered as a monophyletic clade nested within the Piptadenia group and includes the former members of Schrankia, corroborating transfer of that genus to Mimosa. Although we found good support for several infrageneric groups, only one section (Mimadenia) was recovered as monophyletic. All but one of the morphological characters analyzed showed high levels of homoplasy. High levels of geographic structure were found, with species from the same area tending to group together in the phylogeny. Old World species of Mimosa form a monophyletic clade deeply nested within New World groups, indicating recent (6-10 Ma) long-distance dispersal. Although based on a single plastid region, our results establish a preliminary phylogenetic framework for Mimosa that can be used to infer patterns of morphological evolution and relationships and which provides pointers toward a revised infrageneric classification.

Disentangling the Dynamical Mechanisms for Cluster Galaxy Evolution

DTIC Science & Technology

2008-02-01

reversible energy and angular momentum exchange between the density wave and the disk matter and the outward transport of these exchanged energy and angular...elapsed time for a smaller z as well. Yet the argument should hold no matter what observation epoch one uses, as long as one concentrates to the regions... matter (CDM) paradigm, galaxy mergers are the preferred means of morphological evolution of galaxies in clusters (see, e.g., Kauffmann 1995). Even though

Long-term enteral arginine supplementation in rats with intestinal ischemia and reperfusion.

PubMed

Lee, Chien-Hsing; Hsiao, Chien-Chou; Hung, Ching-Yi; Chang, Yu-Jun; Lo, Hui-Chen

2012-06-01

The effects of short-term enteral arginine supplementation on intestinal ischemia-reperfusion (IR) injury have been widely studied, especially the ischemic preconditioning supplementation. The aim of this study was to investigate the effects of long-term intra-duodenal supplementation of arginine on intestinal morphology, arginine-associated amino acid metabolism, and inflammatory responses in rats with intestinal IR. Male Wistar rats with or without three hours of ileal ischemia underwent duodenal cannulation for continuous infusion of formula with 2% arginine or commercial protein powder for 7 d. The serological examinations, plasma amino acid and cytokine profiles, and intestinal morphology were assessed. Intestinal IR injury had significant impacts on the decreases in circulating red blood cells, hemoglobin, ileum mass, and villus height and crypt depth of the distal jejunum. In addition, arginine supplementation decreased serum cholesterol and increased plasma arginine concentrations. In rats with intestinal IR injury, arginine supplementation significantly decreased serum nitric oxide, plasma citrulline and ornithine, and the mucosal protein content of the ileum. These results suggest that long-term intra-duodenal arginine administration may not have observable benefits on intestinal morphology or inflammatory response in rats with intestinal ischemia and reperfusion injury. Therefore, the necessity of long-term arginine supplementation for patients with intestinal ischemia and reperfusion injury remains questionable and requires further investigation. Copyright © 2012 Elsevier Inc. All rights reserved.

Decoupled diversification dynamics of feeding morphology following a major functional innovation in marine butterflyfishes.

PubMed

Konow, Nicolai; Price, Samantha; Abom, Richard; Bellwood, David; Wainwright, Peter

2017-08-16

The diversity of fishes on coral reefs is influenced by the evolution of feeding innovations. For instance, the evolution of an intramandibular jaw joint has aided shifts to corallivory in Chaetodon butterflyfishes following their Miocene colonization of coral reefs. Today, over half of all Chaetodon species consume coral, easily the largest concentration of corallivores in any reef fish family. In contrast with Chaetodon , other chaetodontids, including the long-jawed bannerfishes, remain less intimately associated with coral and mainly consume other invertebrate prey. Here, we test (i) if intramandibular joint (IMJ) evolution in Chaetodon has accelerated feeding morphological diversification, and (ii) if cranial and post-cranial traits were affected similarly. We measured 19 cranial functional morphological traits, gut length and body elongation for 33 Indo-Pacific species. Comparisons of Brownian motion rate parameters revealed that cranial diversification was about four times slower in Chaetodon butterflyfishes with the IMJ than in other chaetodontids. However, the rate of gut length evolution was significantly faster in Chaetodon , with no group-differences for body elongation. The contrasting patterns of cranial and post-cranial morphological evolution stress the importance of comprehensive datasets in ecomorphology. The IMJ appears to enhance coral feeding ability in Chaetodon and represents a design breakthrough that facilitates this trophic strategy. Meanwhile, variation in gut anatomy probably reflects diversity in how coral tissues are procured and assimilated. Bannerfishes, by contrast, retain a relatively unspecialized gut for processing invertebrate prey, but have evolved some of the most extreme cranial mechanical innovations among bony fishes for procuring elusive prey. © 2017 The Author(s).

Modelling of the physico-chemical behaviour of clay minerals with a thermo-kinetic model taking into account particles morphology in compacted material.

NASA Astrophysics Data System (ADS)

Sali, D.; Fritz, B.; Clément, C.; Michau, N.

2003-04-01

Modelling of fluid-mineral interactions is largely used in Earth Sciences studies to better understand the involved physicochemical processes and their long-term effect on the materials behaviour. Numerical models simplify the processes but try to preserve their main characteristics. Therefore the modelling results strongly depend on the data quality describing initial physicochemical conditions for rock materials, fluids and gases, and on the realistic way of processes representations. The current geo-chemical models do not well take into account rock porosity and permeability and the particle morphology of clay minerals. In compacted materials like those considered as barriers in waste repositories, low permeability rocks like mudstones or compacted powders will be used : they contain mainly fine particles and the geochemical models used for predicting their interactions with fluids tend to misjudge their surface areas, which are fundamental parameters in kinetic modelling. The purpose of this study was to improve how to take into account the particles morphology in the thermo-kinetic code KINDIS and the reactive transport code KIRMAT. A new function was integrated in these codes, considering the reaction surface area as a volume depending parameter and the calculated evolution of the mass balance in the system was coupled with the evolution of reactive surface areas. We made application exercises for numerical validation of these new versions of the codes and the results were compared with those of the pre-existing thermo-kinetic code KINDIS. Several points are highlighted. Taking into account reactive surface area evolution during simulation modifies the predicted mass transfers related to fluid-minerals interactions. Different secondary mineral phases are also observed during modelling. The evolution of the reactive surface parameter helps to solve the competition effects between different phases present in the system which are all able to fix the chemical elements mobilised by the water-minerals interaction processes. To validate our model we simulated the compacted bentonite (MX80) studied for engineered barriers for radioactive waste confinement and mainly composed of Na-Ca-montmorillonite. The study of particles morphology and reactive surfaces evolutions reveals that aqueous ions have a complex behaviour, especially when competitions between various mineral phases occur. In that case, our model predicts a preferential precipitation of finest particles, favouring smectites instead of zeolites. This work is a part of a PhD Thesis supported by Andra, the French Radioactive Waste Management Agency.

On the long term evolution of white dwarfs in cataclysmic variables and their recurrence times

NASA Technical Reports Server (NTRS)

Sion, E. M.; Starrfield, S. G.

1985-01-01

The relevance of the long term quasi-static evolution of accreting white dwarfs to the outbursts of Z Andromeda-like symbiotics; the masses and accretion rates of classical nova white dwarfs; and the observed properties of white dwarfs detected optically and with IUE in low M dot cataclysmic variables is discussed. A surface luminosity versus time plot for a massive, hot white dwarf bears a remarkable similarity to the outburst behavior of the hot blue source in Z Andromeda. The long term quasi-static models of hot accreting white dwarfs provide convenient constraints on the theoretically permissible parameters to give a dynamical (nova-like) outburst of classic white dwarfs.

Adaptations of the vestibular system to short and long-term exposures to altered gravity

NASA Astrophysics Data System (ADS)

Bruce, L. L.

2003-10-01

Long-term space flight creates unique environmental conditions to which the vestibular system must adapt for optimal survival of a given organism. The development and maintenance of vestibular connections are controlled by environmental gravitational stimulation as well as genetically controlled molecular interactions. This paper describes the effects of hypergravity on axonal growth and dendritic morphology, respectively. Two aspects of this vestibular adaptation are examined: (1) How does long-term exposure to hypergravity affect the development of vestibular axons? (2) How does short-term exposure to extremely rapid changes in gravity, such as those that occur during shuttle launch and landing, affect dendrites of the vestibulocerebellar system? To study the effects of longterm exposures to altered gravity, embryonic rats that developed in hypergravity were compared to microgravity-exposed and control rats. Examination of the vestibular projections from epithelia devoted to linear and angular acceleration revealed that the terminal fields segregate differently in rat embryos that gestated in each of the gravitational environments.To study the effects of short-term exposures to altered gravity, mice were exposed briefly to strong vestibular stimuli and the vestibulocerebellum was examined for any resulting morphological changes. My data show that these stimuli cause intense vestibular excitation of cerebellar Purkinje cells, which induce up-regulation of clathrin-mediated endocytosis and other morphological changes that are comparable to those seen in long-term depression. This system provides a basis for studying how the vestibular environment can modify cerebellar function, allowing animals to adapt to new environments.

Long-Term Evolution of the Sun and our Biosphere: Causes and Effects?

NASA Astrophysics Data System (ADS)

Des Marais, D. J.

2000-05-01

The course of early biological evolution felt the environmental consequences of changes in the solar output (discussed here), as well as long-term decreases in planetary heat flow and the flux of extraterrestrial impactors. A large, early UV flux fueled the photodissociation of atmospheric water vapor, sustaining a significant hydrogen flux to space. This flux caused Earth's crust to become oxidized, relative to its mantle. Accordingly, reduced gases and aqueous solutes that were erupted volcanically into the relatively more oxidized surface environment created sources of chemical redox energy for the origin and early evolution of life. Although the solar constant has increased some 30 percent over Earth's lifetime, oceans remained remarkably stable for more than 3.8 billion years. Thus a very effective climate regulation was probably achieved by decreasing over time the atmospheric inventories of greenhouse gases such as carbon dioxide and methane. Such decreases probably had major consequences for the biosphere. Substantial early marine bicarbonate and carbon dioxide inventories sustained abundant abiotic precipitation of carbonates, with consequences for the stability and habitability of key aqueous environments. A long-term decline in carbon dioxide levels increased the bioenergetic requirements for carbon dioxide as well as other aspects of the physiology of photosynthetic microorganisms. The long-term trend of global mean surface temperature is still debated, as is the role of the sun's evolution in that trend. Future increases in the solar constant will drive atmospheric carbon dioxide levels down further, challenging plants to cope with ever-dwindling concentrations of carbon substrates. Climate regulation will be achieved by modulating an increasing abundance of high-albedo water vapor clouds. Future biological evolution defies precise predictions, however it is certain that the sun's continuing evolution will play a key role.

Investigation of the operating conditions to morphology evolution of β-L-glutamic acid during seeded cooling crystallization

NASA Astrophysics Data System (ADS)

Zhang, Fangkun; Liu, Tao; Huo, Yan; Guan, Runduo; Wang, Xue Z.

2017-07-01

In this paper the effects of operating conditions including cooling rate, initial supersaturation, and seeding temperature were investigated on the morphology evolution of β-L-glutamic acid (β-LGA) during seeded cooling crystallization. Based on the results of in-situ image acquisition of the crystal morphology evolution during the crystallization process, it was found that the crystal products tend to be plate-like or short rod-like under a slow cooling rate, low initial supersaturation, and low seeding temperature. In the opposite, the operating conditions of a faster cooling rate, higher initial supersaturation, and higher seeding temperature tend to produce long rod-like or needle-like crystals, and meanwhile, the length and width of crystal products will be increased together with a wider crystal size distribution (CSD). The aspect ratio of crystals, defined by the crystal length over width measured from in-situ or sample images, was taken as a shape index to analyze the crystal morphologies. Based on comparative analysis of the experimental results, guidelines on these operating conditions were given for obtaining the desired crystal shapes, along with the strategies for obtaining a narrower CSD for better product quality. Experimental verifications were performed to illustrate the proposed guidelines on the operating conditions for seeded cooling crystallization of LGA solution.

Long-Term Evolution of Email Networks: Statistical Regularities, Predictability and Stability of Social Behaviors.

PubMed

Godoy-Lorite, Antonia; Guimerà, Roger; Sales-Pardo, Marta

2016-01-01

In social networks, individuals constantly drop ties and replace them by new ones in a highly unpredictable fashion. This highly dynamical nature of social ties has important implications for processes such as the spread of information or of epidemics. Several studies have demonstrated the influence of a number of factors on the intricate microscopic process of tie replacement, but the macroscopic long-term effects of such changes remain largely unexplored. Here we investigate whether, despite the inherent randomness at the microscopic level, there are macroscopic statistical regularities in the long-term evolution of social networks. In particular, we analyze the email network of a large organization with over 1,000 individuals throughout four consecutive years. We find that, although the evolution of individual ties is highly unpredictable, the macro-evolution of social communication networks follows well-defined statistical patterns, characterized by exponentially decaying log-variations of the weight of social ties and of individuals' social strength. At the same time, we find that individuals have social signatures and communication strategies that are remarkably stable over the scale of several years.

Comparative evaluation of cast aluminum alloys for automotive cylinder heads: Part I Microstructure evolution

DOE Office of Scientific and Technical Information (OSTI.GOV)

Roy, Shibayan; Allard, Jr, Lawrence Frederick; Rodriguez, Andres

The present study stages a comparative evaluation of microstructure and associated mechanical and thermal response for common cast aluminum alloys that are used for manufacturing automotive cylinder heads. The systems considered are Al-Cu (206-T6), Al-Si-Cu (319-T7), and Al-Si (356-T6, A356-T6, and A356 + 0.5Cu-T6). The focus of the present manuscript is on the evaluation of microstructure at various length scales after aging, while the second manuscript will deal with the mechanical and thermal response of these alloys due to short-term (aging) and long-term (pre-conditioning) heat treatments. At the grain-scale, the Al-Cu alloy possessed an equiaxed microstructure as opposed to themore » dendritic structure for the Al-Si-Cu or Al-Si alloys which is related to the individual solidification conditions for these alloy systems. The composition and morphology of intermetallic precipitates within the grain and at the grain/dendritic boundary are dictated by the alloy chemistry, solidification, and heat treatment conditions. At the nanoscale, these alloys contain various metastable strengthening precipitates (GPI and θ''θ'' in Al-Cu alloy, θ'θ' in Al-Si-Cu alloy, and β'β' in Al-Si alloys) with varying size, morphology, coherency, and thermal stability.« less

Comparative evaluation of cast aluminum alloys for automotive cylinder heads: Part I Microstructure evolution

DOE PAGES

Roy, Shibayan; Allard, Jr, Lawrence Frederick; Rodriguez, Andres; ...

2017-03-06

The present study stages a comparative evaluation of microstructure and associated mechanical and thermal response for common cast aluminum alloys that are used for manufacturing automotive cylinder heads. The systems considered are Al-Cu (206-T6), Al-Si-Cu (319-T7), and Al-Si (356-T6, A356-T6, and A356 + 0.5Cu-T6). The focus of the present manuscript is on the evaluation of microstructure at various length scales after aging, while the second manuscript will deal with the mechanical and thermal response of these alloys due to short-term (aging) and long-term (pre-conditioning) heat treatments. At the grain-scale, the Al-Cu alloy possessed an equiaxed microstructure as opposed to themore » dendritic structure for the Al-Si-Cu or Al-Si alloys which is related to the individual solidification conditions for these alloy systems. The composition and morphology of intermetallic precipitates within the grain and at the grain/dendritic boundary are dictated by the alloy chemistry, solidification, and heat treatment conditions. At the nanoscale, these alloys contain various metastable strengthening precipitates (GPI and θ''θ'' in Al-Cu alloy, θ'θ' in Al-Si-Cu alloy, and β'β' in Al-Si alloys) with varying size, morphology, coherency, and thermal stability.« less

Comparative Evaluation of Cast Aluminum Alloys for Automotive Cylinder Heads: Part I—Microstructure Evolution

NASA Astrophysics Data System (ADS)

Roy, Shibayan; Allard, Lawrence F.; Rodriguez, Andres; Watkins, Thomas R.; Shyam, Amit

2017-05-01

The present study stages a comparative evaluation of microstructure and associated mechanical and thermal response for common cast aluminum alloys that are used for manufacturing automotive cylinder heads. The systems considered are Al-Cu (206-T6), Al-Si-Cu (319-T7), and Al-Si (356-T6, A356-T6, and A356 + 0.5Cu-T6). The focus of the present manuscript is on the evaluation of microstructure at various length scales after aging, while the second manuscript will deal with the mechanical and thermal response of these alloys due to short-term (aging) and long-term (pre-conditioning) heat treatments. At the grain-scale, the Al-Cu alloy possessed an equiaxed microstructure as opposed to the dendritic structure for the Al-Si-Cu or Al-Si alloys which is related to the individual solidification conditions for these alloy systems. The composition and morphology of intermetallic precipitates within the grain and at the grain/dendritic boundary are dictated by the alloy chemistry, solidification, and heat treatment conditions. At the nanoscale, these alloys contain various metastable strengthening precipitates (GPI and θ^'' in Al-Cu alloy, θ^' in Al-Si-Cu alloy, and β^' in Al-Si alloys) with varying size, morphology, coherency, and thermal stability.

Long-term evolution of the western South Atlantic passive continental margin in a key area of SE Brazil revealed by thermokinematic numerical modeling using the software code Pecube

NASA Astrophysics Data System (ADS)

Stippich, Christian; Krob, Florian; Glasmacher, Ulrich A.; Hackspacher, Peter C.

2016-04-01

The aim of the research is to quantify the long-term evolution of the western South Atlantic passive continental margin (SAPCM) in SE-Brazil. Excellent onshore outcrop conditions and extensive pre-rift to post-rift archives between São Paulo and Laguna allow a high precision quantification of exhumation, and rock uplift rates, influencing physical parameters, long-term acting forces, and process-response systems. Research will integrate published1 and partly published thermochronological data from Brazil, and test lately published new concepts on causes of long-term landscape and lithospheric evolution in southern Brazil. Six distinct lithospheric blocks (Laguna, Florianópolis, Curitiba, Ilha Comprida, Peruibe and Santos), which are separated by fracture zones1 are characterized by individual thermochronological age spectra. Furthermore, the thermal evolution derived by numerical modeling indicates variable post-rift exhumation histories of these blocks. In this context, we will provide information on the causes for the complex exhumation history of the Florianópolis, and adjacent blocks. The climate-continental margin-mantle coupled process-response system is caused by the interaction between endogenous and exogenous forces, which are related to the mantle-process driven rift - drift - passive continental margin evolution of the South Atlantic, and the climate change since the Early/Late Cretaceous climate maximum. Special emphasis will be given to the influence of long-living transform faults such as the Florianopolis Fracture Zone (FFZ) on the long-term topography evolution of the SAPCM's. A long-term landscape evolution model with process rates will be achieved by thermo-kinematic 3-D modeling (software code PECUBE2,3 and FastScape4). Testing model solutions obtained for a multidimensional parameter space against the real thermochronological and geomorphological data set, the most likely combinations of parameter rates, and values can be constrained. The data and models will allow separating the exogenous and endogenous forces and their process rates. References 1. Karl, M., Glasmacher, U.A., Kollenz, S., Franco-Magalhaes, A.O.B., Stockli, D.F., Hackspacher, P., 2013. Evolution of the South Atlantic passive continental margin in southern Brazil derived from zircon and apatite (U-Th-Sm)/He and fission-track data. Tectonophysics, Volume 604, Pages 224-244. 2. Braun, J., 2003. Pecube: A new finite element code to solve the 3D heat transport equation including the effects of a time-varying, finite amplitude surface topography. Computers and Geosciences, v.29, pp.787-794. 3. Braun, J., van der Beek, P., Valla, P., Robert, X., Herman, F., Goltzbacj, C., Pedersen, V., Perry, C., Simon-Labric, T., Prigent, C. 2012. Quantifying rates of landscape evolution and tectonic processes by thermochronology and numerical modeling of crustal heat transport using PECUBE. Tectonophysics, v.524-525, pp.1-28. 4. Braun, J. and Willett, S.D., 2013. A very efficient, O(n), implicit and parallel method to solve the basic stream power law equation governing fluvial incision and landscape evolution. Geomorphology, v.180-181, 170-179.

The evolution of vertebral formulae in Hominoidea.

PubMed

Thompson, Nathan E; Almécija, Sergio

2017-09-01

Primate vertebral formulae have long been investigated because of their link to locomotor behavior and overall body plan. Knowledge of the ancestral vertebral formulae in the hominoid tree of life is necessary to interpret the pattern of evolution among apes, and to critically evaluate the morphological adaptations involved in the transition to hominin bipedalism. Though many evolutionary hypotheses have been proposed based on living and fossil species, the application of quantitative phylogenetic methods for thoroughly reconstructing ancestral vertebral formulae and formally testing patterns of vertebral evolution is lacking. To estimate the most probable scenarios of hominoid vertebral evolution, we utilized an iterative ancestral state reconstruction approach to determine likely ancestral vertebral counts in apes, humans, and other anthropoid out-groups. All available ape and hominin fossil taxa with an inferred regional vertebral count were included in the analysis. Sensitivity iterations were performed both by changing the phylogenetic position of fossil taxa with a contentious placement, and by changing the inferred number of vertebrae in taxa with uncertain morphology. Our ancestral state reconstruction results generally support a short-backed hypothesis of human evolution, with a Pan-Homo last common ancestor possessing a vertebral formulae of 7:13:4:6 (cervical:thoracic:lumbar:sacral). Our results indicate that an initial reduction in lumbar vertebral count and increase in sacral count is a synapomorphy of crown hominoids (supporting an intermediate-backed hypothesis for the origins of the great ape-human clade). Further reduction in lumbar count occurs independently in orangutans and African apes. Our results highlight the complexity and homoplastic nature of vertebral count evolution, and give little support to the long-backed hypothesis of human evolution. Copyright © 2017 Elsevier Ltd. All rights reserved.

Using Decision Structures for Policy Analysis in Software Product-line Evolution - A Case Study

NASA Astrophysics Data System (ADS)

Sarang, Nita; Sanglikar, Mukund A.

Project management decisions are the primary basis for project success (or failure). Mostly, such decisions are based on an intuitive understanding of the underlying software engineering and management process and have a likelihood of being misjudged. Our problem domain is product-line evolution. We model the dynamics of the process by incorporating feedback loops appropriate to two decision structures: staffing policy, and the forces of growth associated with long-term software evolution. The model is executable and supports project managers to assess the long-term effects of possible actions. Our work also corroborates results from earlier studies of E-type systems, in particular the FEAST project and the rules for software evolution, planning and management.

Enhanced Corrosion Resistance of Superhydrophobic Layered Double Hydroxide Films with Long-Term Stability on Al Substrate.

PubMed

Cao, Yanhui; Zheng, Dajiang; Li, Xueliang; Lin, Jinyan; Wang, Cheng; Dong, Shigang; Lin, Changjian

2018-05-02

A superhydrophobic ZnAl-layered double hydroxide (LDH)-La film was prepared by a hydrothermal method and further modification by laurate anions in this work. Comprehensive characterizations of this film were performed in terms of morphology, composition, structure, roughness, and wettability by scanning electronic microscopy, energy-dispersive X-ray spectroscopy, X-ray diffraction, three-dimensional laser scanning confocal microscopy. The long-term corrosion protection effect of this superhydrophobic film was investigated deeply by monitoring the changes of the electrochemical impedance spectra for a long time of up to a month in 3.5 wt % NaCl solution. In the meantime, the changes of the contact angle were also recorded with the evolution of the immersion time. The result indicated that the stable superhydrophobic ZnAl-LDH-La film was able to provide efficient protection for the underlying Al substrate for a long time. In addition, the capability of the superhydrophobic surface against harsh conditions, including chemical damages and physical damages, was emphatically investigated. It was found that the superhydrophobic surface was chemically stable toward acid (pH ≥ 3), alkali, and heating, and it also exhibited high ultraviolet (UV) radiation resistance. This superhydrophobic coating maintained superhydrophobicity for 7 days of radiation in an UV chamber equipped with a 40 W UV lamp (λ = 254 nm), indicating superior ability of adapting to outdoor environment. This comprehensive investigation of the superhydrophobic ZnAl-LDH-La film is considerably helpful for researchers and engineers to get deep insight into its potential for practical applications in the field of corrosion and protection.

Cranial morphology of Javanese Homo erectus: new evidence for continuous evolution, specialization, and terminal extinction.

PubMed

Kaifu, Yousuke; Aziz, Fachroel; Indriati, Etty; Jacob, Teuku; Kurniawan, Iwan; Baba, Hisao

2008-10-01

Our current knowledge of the evolution of Homo during the early to middle Pleistocene is far from complete. This is not only because of the small number of fossil samples available, but also due to the scarcity of standardized datasets which are reliable in terms of landmark identification, interobserver error, and other distorting factors. This study aims to accurately describe the cranial morphological changes of H. erectus in Java using a standardized set of measurements taken by the authors from 18 adult crania from Sangiran, Trinil, Sambungmacan, and Ngandong. The identification of some obscure landmarks was aided by the use of micro-CT imaging. While recent studies tend to emphasize evolutionary conservatism in Javanese H. erectus, our results reinforce the theory that chronologically later groups experienced distinct morphological changes in a number of cranial traits. Some of these changes, particularly those related to brain size expansion, are similar to those observed for the genus Homo as a whole, whereas others are apparently unique specializations restricted to Javanese H. erectus. Such morphological specializations in Java include previously undescribed anteroposterior lengthening of the midcranial base and an anterior shift of the posterior temporal muscle, which might have influenced the morphology of the angular torus and supramastoid sulcus. Analyses of morphological variation indicate that the three crania from Sambungmacan variously fill the morphological gap between the chronologically earlier (Bapang-AG, Bapang Formation above the Grenzbank zone in Sangiran) and later (Ngandong) morphotypes of Java. At least one of the Bapang-AG crania, Sangiran 17, also exhibits a few characteristics which potentially indicate evolution toward the Ngandong condition. These strongly suggest the continuous, gradual morphological evolution of Javanese H. erectus from the Bapang-AG to Ngandong periods. The development of some unique features in later Javanese H. erectus supports the hypothesis that this Javanese lineage went extinct without making significant contributions to the ancestry of modern humans.

Linking offshore morphology and interplate kinematics along the Chilean subduction margin

NASA Astrophysics Data System (ADS)

Urrutia, I.; Oncken, O.; Moreno, M.; Cesca, S.

2016-12-01

The coastal morphology along subduction zones is understood to result from the interaction of the megathrust seismic cycle deformation with erosion and sedimentation. The variation of this interplay creates some areas that remain stable and other areas that accumulate permanent deformation over long time scales. However, the link between plate interface kinematics and geomorphology has not been fully explored and therefore a potentially valuable constraint on the long-term seismotectonic segmentation has been neglected. Here, by combining morphometric and statistic analysis with numerical modeling of the transient kinematics (constrained by GPS data along the Chilean margin), we validate that the morphological domains exhibiting conditional stability spatially correlate with locked areas and the rupture extents of recent great earthquakes, and that these domains are primarily related to forearc basins and marine terraces. This correlation, that likely integrates over a time window of several 103 to several 105 years, corroborates that earthquake cycle deformation has a strong imprint on the coastal morphology and that the instrumentally inferred locking has a long term memory across multiple seismic cycles. From this interrelationship we suggest that areas with gentle slopes and that have been identified geodetically as being locked indicate a quiescence process, which can be interpreted as the expression of spatial variations in friction that control the sizes and recurrence intervals of megathrust earthquakes. Our findings reveal that the width of the seismogenic zone is linked to both long and short-term deformations, opening up new avenues for inferring seismic scenarios of a margin by analysing its morphological domains.

[Adaptive adjustment of rhizome and root system on morphology, biomass and nutrient in Phyllostachys rivalis under long-term waterlogged condition].

PubMed

Liu, Yu-fang; Chen, Shuang-lin; Li Ying-chun; Guo, Zi-wu; Li, Ying-chun; Yang, Qing-ping

2015-12-01

The research was to approach the growth strategy of rhizome and roots based on the morphology, biomass and nutrient in Phyllostachys rivalis under long-term waterlogged conditions, and provided a theoretical basis for its application for vegetation restoration in wetland and water-level fluctuation belts. The morphological characteristics, physiological and biochemical indexes of annual bamboo rhizome and roots were investigated with an experiment using individually potted P. rivalis which was treated by artificial water-logging for 3, 6, and 12 months. Accordingly the morphological characteristics, biomass allocation, nutrient absorption and balance in rhizome and roots of P. rivalis were analyzed. The results showed that there was no obvious impact of long-term water-logging on the length and diameter of rhizomes, diameter of roots in P. rivalis. The morphological characteristics of rhizome had been less affected generally under water-logging for 3 months. And less rhizomes were submerged, while the growth of roots was inhibited to some extent. Furthermore, with waterlogging time extended, submerged roots and rhizomes grew abundantly, and the roots and rhizomes in soil were promoted. Moreover for ratios of rhizome biomass in soil and water, there were no obvious variations, the same for the root biomass in soil to total biomass. The ratio of root biomass in water to total biomass and the ratio of root biomass in water to root biomass in soil both increased significantly. The results indicated that P. rivalis could adapt to waterlogged conditions gradually through growth regulation and reasonable biomass distribution. However, the activity of rhizome roots in soil decreased and the nutrient absorption was inhibited by long-term water-logging, although it had no effect on stoichiometric ratios of root nutrient in soil. The activity of rhizome root in water increased and the stoichiometric ratios adjusted adaptively to waterlogged conditions, the ratio of N/P increased, while N/K and P/K decreased, which implied that roots in water absorbed oxygen and nutrients could help P. rivalis adapt to long-term waterlogged environment effectively.

The Planform Mobility of Large River Channel Confluences

NASA Astrophysics Data System (ADS)

Sambrook Smith, Greg; Dixon, Simon; Nicholas, Andrew; Bull, Jon; Vardy, Mark; Best, James; Goodbred, Steven; Sarker, Maminul

2017-04-01

Large river confluences are widely acknowledged as exerting a controlling influence upon both upstream and downstream morphology and thus channel planform evolution. Despite their importance, little is known concerning their longer-term evolution and planform morphodynamics, with much of the literature focusing on confluences as representing fixed, nodal points in the fluvial network. In contrast, some studies of large sand bed rivers in India and Bangladesh have shown large river confluences can be highly mobile, although the extent to which this is representative of large confluences around the world is unknown. Confluences have also been shown to generate substantial bed scours, and if the confluence location is mobile these scours could 'comb' across wide areas. This paper presents field data of large confluences morphologies in the Ganges-Brahmaputra-Meghna river basin, illustrating the spatial extent of large river bed scours and showing scour depth can extend below base level, enhancing long term preservation potential. Based on a global review of the planform of large river confluences using Landsat imagery from 1972 to 2014 this study demonstrates such scour features can be highly mobile and there is an array of confluence morphodynamic types: from freely migrating confluences, through confluences migrating on decadal timescales to fixed confluences. Based on this analysis, a conceptual model of large river confluence types is proposed, which shows large river confluences can be sites of extensive bank erosion and avulsion, creating substantial management challenges. We quantify the abundance of mobile confluence types by classifying all large confluences in both the Amazon and Ganges-Brahmaputra-Meghna basins, showing these two large rivers have contrasting confluence morphodynamics. We show large river confluences have multiple scales of planform adjustment with important implications for river management, infrastructure and interpretation of the rock record.

Wind-Driven Global Evolution of Protoplanetary Disks

NASA Astrophysics Data System (ADS)

Bai, Xue-Ning

It has been realized in the recent years that magnetized disk winds disk- likely play a decisive role in the global evolution of protoplanetary disks protoplanetary evolution (PPDs). Motivated by recent local simulations local , we first describe a global magnetized disk wind model, from which wind-driven accretion rate -rate wind-driven and wind mass loss rate can be reliably estimated. Both rates are shown to strongly depend on the amount of magnetic flux magnetic threading the disk. Wind kinematics is also affected by thermodynamics in the wind zone (particularly far UV heating/ionization), and the mass loss process loss- can be better termed as "magneto-photoevaporation." We then construct a framework of PPD global evolution global that incorporates wind-driven and viscously driven accretion viscously-driven as well as wind mass loss. For typical PPD accretion rates, the required field strength would lead to wind mass loss rate at least comparable to disk accretion rate, and mass loss is most significant in the outer disk (beyond ˜ 10 AU). Finally, we discuss the transport of magnetic flux in PPDs, which largely governs the long-term evolution long-term of PPDs.

Effect of Supragingival Irrigation with Aerosolized 0.5% Hydrogen Peroxide on Clinical Periodontal Parameters, Markers of Systemic Inflammation, and Morphology of Gingival Tissues in Patients with Periodontitis

PubMed Central

Žekonis, Gediminas; Žekonis, Jonas; Gleiznys, Alvydas; Noreikienė, Viktorija; Balnytė, Ingrida; Šadzevičienė, Renata; Narbutaitė, Julija

2016-01-01

Background Various studies have shown that non-surgical periodontal treatment is correlated with reduction in clinical parameters and plasma levels of inflammatory markers. The aim of this study was to evaluate the effect of long-term weekly supragingival irrigations with aerosolized 0.5% hydrogen peroxide as maintenance therapy followed by non-surgical periodontal treatment on clinical parameters, plasma levels of inflammatory markers, and morphological changes in gingival tissues of patients with periodontitis. Material/Methods In total, 43 patients with chronic periodontitis were randomly allocated to long-term maintenance therapy. The patients’ periodontal status was assessed using clinical parameters of approximal plaque index, modified gingival index, bleeding index, pocket probing depth, and plasma levels of inflammatory markers (high-sensitivity C-reactive protein and white blood cell count) at baseline and after 1, 2, and 3 years. The morphological status of gingival tissues (immediately after supragingival irrigation) was assessed microscopically. Results Complete data were obtained on 34 patients. A highly statistically significant and consistent reduction was observed in all long-term clinical parameters and plasma levels of inflammatory markers. Morphological data showed abundant spherical bubbles in gingival tissues. Conclusions 1. The present study showed that non-surgical periodontal treatment with long-term weekly supragingival irrigations with aerosolized 0.5% hydrogen peroxide improved clinical periodontal status and plasma levels of inflammatory markers and may be a promising method in periodontology. 2. We found that supragingival irrigation with aerosolized 0.5% hydrogen peroxide created large numbers of spherical bubbles in gingival tissues. PMID:27743448

The impact of long-term water stress on relative growth rate and morphology of needles and shoots of Metasequoia glyptostroboides seedlings: research toward identifying mechanistic models.

PubMed

Zhang, Yanxiang; Equiza, Maria Alejandra; Zheng, Quanshui; Tyree, Melvin T

2011-09-01

Leaf morphology in the upper canopy of trees tends to be different from that lower down. The effect of long-term water stress on leaf growth and morphology was studied in seedlings of Metasequoia glyptostroboides to understand how tree height might affect leaf morphology in larger trees. Tree height increases water stress on growing leaves through increased hydraulic resistance to water flow and increased gravitational potential, hence we assume that water stress imposed by soil dehydration will have an effect equivalent to stress induced by height. Seedlings were subjected to well-watered and two constant levels of long-term water stress treatments. Drought treatment significantly reduced final needle count, area and mass per area (leaf mass area, LMA) and increased needle density. Needles from water-stressed plants had lower maximum volumetric elastic modulus (ε(max)), osmotic potential at full turgor (Ψ¹⁰⁰(π)) (and at zero turgor (Ψ⁰(π)) (than those from well-watered plants. Palisade and spongy mesophyll cell size and upper epidermal cell size decreased significantly in drought treatments. Needle relative growth rate, needle length and cell sizes were linear functions of the daily average water potential at the time of leaf growth (r² 0.88-0.999). We conclude that water stress alone does mimic the direction and magnitude of changes in leaf morphology observed in tall trees. The results are discussed in terms of various models for leaf growth rate. Copyright © Physiologia Plantarum 2011.

Short- and Long-term Evolutionary Dynamics of Bacterial Insertion Sequences: Insights from Wolbachia Endosymbionts

PubMed Central

Cerveau, Nicolas; Leclercq, Sébastien; Leroy, Elodie; Bouchon, Didier; Cordaux, Richard

2011-01-01

Transposable elements (TE) are one of the major driving forces of genome evolution, raising the question of the long-term dynamics underlying their evolutionary success. Long-term TE evolution can readily be reconstructed in eukaryotes, thanks to many degraded copies constituting genomic fossil records of past TE proliferations. By contrast, bacterial genomes usually experience high sequence turnover and short TE retention times, thereby obscuring ancient TE evolutionary patterns. We found that Wolbachia bacterial genomes contain 52–171 insertion sequence (IS) TEs. IS account for 11% of Wolbachia wRi, which is one of the highest IS genomic coverage reported in prokaryotes to date. We show that many IS groups are currently expanding in various Wolbachia genomes and that IS horizontal transfers are frequent among strains, which can explain the apparent synchronicity of these IS proliferations. Remarkably, >70% of Wolbachia IS are nonfunctional. They constitute an unusual bacterial IS genomic fossil record providing direct empirical evidence for a long-term IS evolutionary dynamics following successive periods of intense transpositional activity. Our results show that comprehensive IS annotations have the potential to provide new insights into prokaryote TE evolution and, more generally, prokaryote genome evolution. Indeed, the identification of an important IS genomic fossil record in Wolbachia demonstrates that IS elements are not always of recent origin, contrary to the conventional view of TE evolution in prokaryote genomes. Our results also raise the question whether the abundance of IS fossils is specific to Wolbachia or it may be a general, albeit overlooked, feature of prokaryote genomes. PMID:21940637

Short- and long-term evolutionary dynamics of bacterial insertion sequences: insights from Wolbachia endosymbionts.

PubMed

Cerveau, Nicolas; Leclercq, Sébastien; Leroy, Elodie; Bouchon, Didier; Cordaux, Richard

2011-01-01

Transposable elements (TE) are one of the major driving forces of genome evolution, raising the question of the long-term dynamics underlying their evolutionary success. Long-term TE evolution can readily be reconstructed in eukaryotes, thanks to many degraded copies constituting genomic fossil records of past TE proliferations. By contrast, bacterial genomes usually experience high sequence turnover and short TE retention times, thereby obscuring ancient TE evolutionary patterns. We found that Wolbachia bacterial genomes contain 52-171 insertion sequence (IS) TEs. IS account for 11% of Wolbachia wRi, which is one of the highest IS genomic coverage reported in prokaryotes to date. We show that many IS groups are currently expanding in various Wolbachia genomes and that IS horizontal transfers are frequent among strains, which can explain the apparent synchronicity of these IS proliferations. Remarkably, >70% of Wolbachia IS are nonfunctional. They constitute an unusual bacterial IS genomic fossil record providing direct empirical evidence for a long-term IS evolutionary dynamics following successive periods of intense transpositional activity. Our results show that comprehensive IS annotations have the potential to provide new insights into prokaryote TE evolution and, more generally, prokaryote genome evolution. Indeed, the identification of an important IS genomic fossil record in Wolbachia demonstrates that IS elements are not always of recent origin, contrary to the conventional view of TE evolution in prokaryote genomes. Our results also raise the question whether the abundance of IS fossils is specific to Wolbachia or it may be a general, albeit overlooked, feature of prokaryote genomes.

[Seed geography: its concept and basic scientific issues].

PubMed

Yu, Shun-Li; Wang, Zong-Shuai; Zeren, Wangmu

2010-01-01

In this paper, a new concept 'seed geography' was provided, and its definition, research contents, and scientific issues were put forward. Seed geography is a newly developed interdisciplinary science from plant geography, seed ecology, and phytosociology, which studies the geographic variation patterns of seed biological traits as well as their relationships with environmental factors from macroscopic to microscopic, and the seed formation, development, and change trends. The main research contents would include geography of seed mass, geography of seed chemical components, geography of seed morphology, geography of seed cell biological characteristics, geography of seed physiological characteristics, geography of seed genetic characteristics, and geography of flower and fruit. To explore the scientific issues in seed geography would help us to better understand the long-term adaptation and evolution of seed characteristics to natural environments.

Convergence among cave catfishes: long-branch attraction and a Bayesian relative rates test.

PubMed

Wilcox, T P; García de León, F J; Hendrickson, D A; Hillis, D M

2004-06-01

Convergence has long been of interest to evolutionary biologists. Cave organisms appear to be ideal candidates for studying convergence in morphological, physiological, and developmental traits. Here we report apparent convergence in two cave-catfishes that were described on morphological grounds as congeners: Prietella phreatophila and Prietella lundbergi. We collected mitochondrial DNA sequence data from 10 species of catfishes, representing five of the seven genera in Ictaluridae, as well as seven species from a broad range of siluriform outgroups. Analysis of the sequence data under parsimony supports a monophyletic Prietella. However, both maximum-likelihood and Bayesian analyses support polyphyly of the genus, with P. lundbergi sister to Ictalurus and P. phreatophila sister to Ameiurus. The topological difference between parsimony and the other methods appears to result from long-branch attraction between the Prietella species. Similarly, the sequence data do not support several other relationships within Ictaluridae supported by morphology. We develop a new Bayesian method for examining variation in molecular rates of evolution across a phylogeny.

Evolution of neuroleptic-induced extrapyramidal syndromes under long-term neuroleptic treatment.

PubMed

Modestin, Jiri; Wehrli, Marianne Vogt; Stephan, Patrik Lukas; Agarwalla, Puspa

2008-03-01

The long-term evolution of neuroleptic-induced extrapyramidal syndromes (EPS) of Parkinsonism, akathisia and tardive dyskinesia (TD) is still a controversial issue worth exploring. A total of 200 inpatients on regular typical neuroleptics (NL) and/or clozapine were assessed in 1995 with regard to the prevalence of EPS. Altogether, 83 patients could be reassessed in 2003/04 (63 had died) using the same methods. Strict definitions of EPS were used. The complete account of NL therapy the patients were prescribed between 1995 and 2003/04 (including atypical NL other than clozapine) was considered. The prevalences found in 1995 and 2003/04 were 17% and 29% for Parkinsonism, 14% and 14% for akathisia, and 24% and 13% for TD. There were considerable intra-individual fluctuations in EPS occurrence even when the overall prevalence rate remained the same. In intra-individual comparisons of EPS ratings on both assessments, there was a tendency for worsening of Parkinsonism to be associated with a current (2003/04) therapy with typical NL; worsening of akathisia was associated with a current therapy with atypical NL other than clozapine, amelioration of akathisia with a current therapy with clozapine; and, basically, there were no significant associations found between the changes in TD ratings and the long-term therapy with typical NL, clozapine, and other atypical NL, considering cumulative doses of all these drugs. In a multivariate analysis, there was a tendency for the long-term evolution of TD to depend on illness duration as the only variable. There are intra-individual fluctuations in all EPS over longer time periods. The choice of current NL therapy has an impact on Parkinsonism and akathisia. The long-term evolution of TD appears independent of NL prescriptions.

Peripheral arteriovenous fistula as vascular access for long-term chemotherapy.

PubMed

Kovalyov, Oleksiy O; Kostyuk, Oleksandr G; Tkachuk, Tetyana V

To provide long-term vascular access in clinical oncology peripheral forearm veins (up to 95% of patients in Ukraine), central venous access and "complete implanted vascular systems" are used most often. Many oncology patients have contraindications to catheterization of superior vena cava. Besides, exploitation of central veins is associated with potential technical and infectious complications. The aim - to study short-term and long-term results of arteriovenous fistula exploitation as vascular access for continuous anticancer therapy. Peripheral venous bed status in 41 oncology patients taking long-term chemotherapy treatment is analyzed in the article. Doppler sonography, morphologic and immune histochemical analyses were used in the study. Doppler sonography found qualitative and quantitative changes in forearm veins at different time periods after initiation of chemotherapy in the majority of patients. The major morphologic manifestations of venous wall damage were chemical phlebitis, local or extended hardening of venous wall, venous thrombosis and extravasations with necrosis and subsequent paravasal tissue sclerosis. Alternative vascular access created in 12 patients completely met the adequacy criteria (safety, multiple use, longevity, realization of the designed therapy program). The conclusion was made about inapplicability of forearm veins for long-term administration of cytostatic agents. If it is impossible to use central veins, arteriovenous fistula can become an alternative vascular access.

Evaluating Quality Circles in U.S. Industry: A Feasibility Study.

DTIC Science & Technology

1982-06-30

are the following: whether the ,.-~. .- "i. 24 circle is cost-effective, whether it deals with long-range rather than crisis problems, whether the...Chapter 4. The evolution of the Japanese instruments took into consideration the nature of the Japanese work setting. To assist in the transculturation ...crises rather than implementing long-term change? Name____________________ Short-term, Long-Term, Title______________________ crisis on-going oriented

Solidification and Morphological Evolution of Al-Si Eutectics in Convector-Diffusive Conditions

NASA Technical Reports Server (NTRS)

Singh, N. B.; Su, Ching Hua; Arnold, Brad; Choa, Fow-Sen; Mandal, K. D.

2017-01-01

The Al-Si material system is an important and has been studied for over half century with a focus on industrial applications in high strength and high conductivity alloys. A great deal of researches have been focused on controlling the morphology and hence performance through the addition of small impurities and by processing conditions. Most of the structure-property correlations are based on the post solidified micromorphology and growth conditions. This material system is unique and has been explored for heat spreader, controlling coefficient of expansion by adjusting composition of silicon and in designing composites. The Al-Si system is very interesting system for understanding the dendritic (Al-rich side) eutectic transition. Recently this system has been of great interest because of its applications in designing heat spreader, low temperature flux to grow SiC large substrates and in controlling the coefficient of expansion of Al-based alloys. We have performed extensive experiments to understand eutectic transition and to understand the morphological evolution in presence of impurities. We will discuss the results of dendritic transition into faceted long grains in convector-diffusive conditions. In this presentation we will present morphological transition in presence of carbon impurity and development of novel morphology.

Plasticity first: molecular signatures of a complex morphological trait in filamentous cyanobacteria.

PubMed

Koch, Robin; Kupczok, Anne; Stucken, Karina; Ilhan, Judith; Hammerschmidt, Katrin; Dagan, Tal

2017-08-31

Filamentous cyanobacteria that differentiate multiple cell types are considered the peak of prokaryotic complexity and their evolution has been studied in the context of multicellularity origins. Species that form true-branching filaments exemplify the most complex cyanobacteria. However, the mechanisms underlying the true-branching morphology remain poorly understood despite of several investigations that focused on the identification of novel genes or pathways. An alternative route for the evolution of novel traits is based on existing phenotypic plasticity. According to that scenario - termed genetic assimilation - the fixation of a novel phenotype precedes the fixation of the genotype. Here we show that the evolution of transcriptional regulatory elements constitutes a major mechanism for the evolution of new traits. We found that supplementation with sucrose reconstitutes the ancestral branchless phenotype of two true-branching Fischerella species and compared the transcription start sites (TSSs) between the two phenotypic states. Our analysis uncovers several orthologous TSSs whose transcription level is correlated with the true-branching phenotype. These TSSs are found in genes that encode components of the septosome and elongasome (e.g., fraC and mreB). The concept of genetic assimilation supplies a tenable explanation for the evolution of novel traits but testing its feasibility is hindered by the inability to recreate and study the evolution of present-day traits. We present a novel approach to examine transcription data for the plasticity first route and provide evidence for its occurrence during the evolution of complex colony morphology in true-branching cyanobacteria. Our results reveal a route for evolution of the true-branching phenotype in cyanobacteria via modification of the transcription level of pre-existing genes. Our study supplies evidence for the 'plasticity-first' hypothesis and highlights the importance of transcriptional regulation in the evolution of novel traits.

Morphological Evolution of Gyroid-Forming Block Copolymer Thin Films with Varying Solvent Evaporation Rate.

PubMed

Wu, Yi-Hsiu; Lo, Ting-Ya; She, Ming-Shiuan; Ho, Rong-Ming

2015-08-05

In this study, we aim to examine the morphological evolution of block copolymer (BCP) nanostructured thin films through solvent evaporation at different rates for solvent swollen polystyrene-block-poly(l-lactide) (PS-PLLA). Interesting phase transitions from disorder to perpendicular cylinder and then gyroid can be found while using a partially selective solvent for PS to swell PS-PLLA thin film followed by solvent evaporation. During the transitions, gyroid-forming BCP thin film with characteristic crystallographic planes of (111)G, (110)G, and (211)G parallel to air surface can be observed, and will gradually transform into coexisting (110)G and (211)G planes, and finally transforms to (211)G plane due to the preferential segregation of constituted block to the surface (i.e., the thermodynamic origin for self-assembly) that affects the relative amount of each component at the air surface. With the decrease on the evaporation rate, the disorder phase will transform to parallel cylinder and then directly to (211)G without transition to perpendicular cylinder phase. Most importantly, the morphological evolution of PS-PLLA thin films is strongly dependent upon the solvent removal rate only in the initial stage of the evaporation process due to the anisotropy of cylinder structure. Once the morphology is transformed back to the isotropic gyroid structure after long evaporation, the morphological evolution will only relate to the variation of the surface composition. Similar phase transitions at the substrate can also be obtained by controlling the ratio of PLLA-OH to PS-OH homopolymers to functionalize the substrate. As a result, the fabrication of well-defined nanostructured thin films with controlled orientation can be achieved by simple swelling and deswelling with controlled evaporation rate.

On the tidal prism-channel area relations

NASA Astrophysics Data System (ADS)

D'Alpaos, Andrea; Lanzoni, Stefano; Marani, Marco; Rinaldo, Andrea

2010-03-01

We verify the broad applicability of tidal prism cross-sectional area relationships, originally proposed to relate the total water volume entering a lagoon during a characteristic tidal cycle (the tidal prism) to the size of its inlet, to arbitrary sheltered cross sections within a tidal network. We suggest, with reasonable approximation defining a statistical tendency rather than a pointwise equivalence, that the regime of tidal channels may be anywhere related to local landscape-forming prisms embedded in a characteristic spring tide oscillation. The importance of the proposed extension stems from its potential for quantitative predictions of the long-term morphological evolution of whole tidal landforms, in response to forcings affecting tidal prisms. This is the case, in particular, for alterations of relative mean sea levels possibly driven by climate change. Various 1-D and 2-D morphodynamic and hydrodynamic models are employed to evaluate peak flow rates, bottom shear stresses, and the ensuing local tidal prisms. One-dimensional morphodynamic models describing both the longitudinal and cross-sectional evolution of tidal channels are used to verify the validity of the relationship for sheltered sections. Relevant hydrodynamic features determined through accurate 2-D numerical models are compared with those obtained through time-invariant equivalents, defining a mean watershed by an energy landscape from averaged free surface gradients. Empirical evidence gathered within the lagoon of Venice (Italy) supports the proposed extension. We conclude that the geomorphic law relating tidal prisms to channel cross-sectional areas anywhere within a tidal landscape is a valuable tool for studies on long-term tidal geomorphology.

Evolution of long-toothed fishes and the changing nature of fish-benthos interactions on coral reefs.

PubMed

Bellwood, David R; Hoey, Andrew S; Bellwood, Orpha; Goatley, Christopher H R

2014-01-01

Interactions between fishes and the benthos have shaped the development of marine ecosystems since at least the early Mesozoic. Here, using the morphology of fish teeth as an indicator of feeding abilities, we quantify changes over the last 240 million years of reef fish evolution. Fossil and extant coral reef fish assemblages reveal exceptional stasis in tooth design over time, with one notable exception, a distinct long-toothed form. Arising only in the last 40 million years, these long-toothed fishes have bypassed the invertebrate link in the food chain, feeding directly on benthic particulate material. With the appearance of elongated teeth, these specialized detritivores have moved from eating invertebrates to eating the food of invertebrates. Over evolutionary time, fishes have slid back down the food chain.

How discordant morphological and molecular evolution among microorganisms can revise our notions of biodiversity on earth

PubMed Central

Lahr, Daniel J. G.; Laughinghouse, H. Dail; Oliverio, Angela; Gao, Feng; Katz, Laura A.

2014-01-01

Microscopy has revealed a tremendous diversity of bacterial and eukaryotic forms. More recent molecular analyses show discordance in estimates of biodiversity based on morphological analyses. Moreover, phylogenetic analyses of the diversity of microbial forms have revealed evidence of convergence at scales as large as interdomain – i.e. convergent forms shared between bacteria and eukaryotes. Here, we highlight examples of such discordance, focusing on exemplary lineages such as testate amoebae, ciliates and cyanobacteria, which have long histories of morphological study. We discuss examples in two categories: 1) morphologically identical (or highly similar) individuals that are genetically distinct and 2) morphologically distinct individuals that are genetically distinct. We argue that hypotheses about discordance can be tested using the concept of neutral morphologies, or more broadly neutral phenotypes, as a null hypothesis. PMID:25156897

Comparison of long-term outcomes between children with aplastic anemia and refractory cytopenia of childhood who received immunosuppressive therapy with antithymocyte globulin and cyclosporine.

PubMed

Hama, Asahito; Takahashi, Yoshiyuki; Muramatsu, Hideki; Ito, Masafumi; Narita, Atsushi; Kosaka, Yoshiyuki; Tsuchida, Masahiro; Kobayashi, Ryoji; Ito, Etsuro; Yabe, Hiromasa; Ohga, Shouichi; Ohara, Akira; Kojima, Seiji

2015-11-01

The 2008 World Health Organization classification proposed a new entity in childhood myelodysplastic syndrome, refractory cytopenia of childhood. However, it is unclear whether this morphological classification reflects clinical outcomes. We retrospectively reviewed bone marrow morphology in 186 children (median age 8 years; range 1-16 years) who were enrolled in the prospective study and received horse antithymocyte globulin and cyclosporine between July 1999 and November 2008. The median follow-up period was 87 months (range 1-146 months). Out of 186 patients, 62 (33%) were classified with aplastic anemia, 94 (49%) with refractory cytopenia of childhood, and 34 (18%) with refractory cytopenia with multilineage dysplasia. Aplastic anemia patients received granulocyte colony-stimulating factor more frequently and for longer durations than other patients (P<0.01). After six months, response rates to immunosuppressive therapy were not significantly different among the 3 groups. Acquisition of chromosomal abnormalities was observed in 5 patients with aplastic anemia, 4 patients with refractory cytopenia of childhood, and 3 patients with refractory cytopenia with multilineage dysplasia. Although the cumulative incidence of total clonal evolution at ten years was not significantly different among the 3 groups, the cumulative incidence of monosomy 7 development was significantly higher in aplastic anemia than in the other groups (P=0.02). Multivariate analysis revealed that only granulocyte colony-stimulating factor administration duration of 40 days or more was a significant risk factor for monosomy 7 development (P=0.02). These findings suggest that even the introduction of a strict morphological distinction from hypoplastic myelodysplastic syndrome cannot eradicate clonal evolution in children with aplastic anemia. Copyright© Ferrata Storti Foundation.

Space-for-time substitution and the evolution of submarine canyons in a passive, progradational margin.

NASA Astrophysics Data System (ADS)

Micallef, Aaron; Ribó, Marta; Canals, Miquel; Puig, Pere; Lastras, Galderic; Tubau, Xavier

2013-04-01

40% of submarine canyons worldwide are located in passive margins, where they constitute preferential conduits of sediment and biodiversity hotspots. Recent studies have presented evidence that submarine canyons incising passive, progradational margins can co-evolve with the adjacent continental slope during long-term margin construction. The stages of submarine canyon initiation and their development into a mature canyon-channel system are still poorly constrained, however, which is problematic when attempting to reconstruct the development of passive continental margins. In this study we analyse multibeam echosounder and seismic reflection data from the southern Ebro margin (western Mediterranean Sea) to document the stages through which a first-order gully develops into a mature, shelf-breaching canyon and, finally, into a canyon-channel system. This morphological evolution allows the application of a space-for-time substitution approach. Initial gully growth on the continental slope takes place via incision and downslope elongation, with limited upslope head retreat. Gravity flows are the main driver of canyon evolution, whereas slope failures are the main agent of erosion; they control the extent of valley widening, promote tributary development, and their influence becomes more significant with time. Breaching of the continental shelf by a canyon results in higher water/sediment loads that enhance canyon development, particularly in the upper reaches. Connection of the canyon head with a paleo-river changes evolution dynamics significantly, promoting development of a channel and formation of depositional landforms. Morphometric analyses demonstrate that canyons develop into geometrically self-similar systems that approach steady-state and higher drainage efficiency. Canyon activity in the southern Ebro margin is pulsating and enhanced during sea level lowstands. Rapid sedimentation by extension of the palaeo-Millars River into the outermost shelf and upper slope is inferred as the source of gravity flows driving canyon evolution. Canyon morphology is shown to be maintained over the course of more than one fall and rise in sea-level. Our model of canyon evolution is applicable to other passive margins (e.g. Argentine continental margin).

Flower Constancy, Insect Psychology, and Plant Evolution

NASA Astrophysics Data System (ADS)

Chittka, Lars; Thomson, James D.; Waser, Nickolas M.

Individuals of some species of pollinating insects tend to restrict their visits to only a few of the available plant species, in the process bypassing valuable food sources. The question of why this flower constancy exists is a rich and important one with implications for the organization of natural communities of plants, floral evolution, and our understanding of the learning processes involved in finding food. Some scientists have assumed that flower constancy is adaptive per se. Others argued that constancy occurs because memory capacity for floral features in insects is limited, but attempts to identify the limitations often remained rather simplistic. We elucidate now different sensory and motor memories from natural foraging tasks are stored and retrieved, using concepts from modern learning science and visual search, and conclude that flower constancy is likely to have multiple causes. Possible constraints favoring constancy are interference sensitivity of short-term memory, and temporal limitations on retrieving information from long-term memory as rapidly as from short-term memory, but further empirical evidence is needed to substantiate these possibilities. In addition, retrieving memories may be slower and more prone to errors when there are several options than when an insect copes with only a single task. In addition to memory limitations, we also point out alternative explanations for flower constancy. We then consider the way in which floral parameters, such as interplant distances, nectar rewards, flower morphology, and floral color (as seen through bees' eyes) affect constancy. Finally, we discuss the implications of pollinator constancy for plant evolution. To date there is no evidence that flowers have diverged to favor constancy, although the appropriate tests may not have yet been conducted. However, there is good evidence against the notion that pollinator constancy is involved in speciation or maintenance of plant species integrity.

Using High-Resolution Comparison of Bedrock Properties and Channel Morphology to Empirically Characterize Erodibility in Fluvial Settings

NASA Astrophysics Data System (ADS)

Chilton, K.; Spotila, J. A.

2017-12-01

Bedrock erodibility exerts a primary control on landscape evolution and fluvial morphodynamics, but the relationships between erodibility and the many factors that influence it (rock strength, spacing and orientation of discontinuities, weathering susceptibility, erosive process, etc.) remain poorly defined. This results in oversimplification of erodibility in landscape evolution models, the primary example being the stream power incision model, which groups together factors which may influence erodibility into a single coefficient. There is therefore need to better define how bedrock properties influence erodibility and, in turn, channel form and evolution. This study seeks to deconvolve the relationships between bedrock material properties and erodibility by quantifying empirical relationships between substrate characteristics and bedrock channel morphology (slope, steepness index, width, form) at a high spatial resolution (5-10 m scale) in continuous and mixed alluvial-bedrock channels. We specifically focus on slowly eroding channels with minimal evidence for landscape transience, such that variations in channel morphology are mainly due to bedrock properties. We also use channels cut into sedimentary rock, which exhibit extreme variation (yet predictability and continuity) in discontinuity spacing. Here we present preliminary data comparing the morphology and bedrock properties of 1st through 4th order channels in the tectonically inactive Valley and Ridge province of the Appalachian Mountains, SW Virginia. Field surveys of channel slope, width, substrate, and form consist of 0.5 km long, continuous stream reaches through different intervals of tilted Paleozoic siliciclastic stratigraphy. Some surveys exhibit nearly complete bedrock exposure, whereas others are predominantly mixed, with localized bedrock reaches in high-slope knickzones. We statistically analyze relationships between fluvial morphology and lithology, strength (based on field and laboratory measurements), and discontinuity spacing and orientation. Results are informative for models of landscape evolution, and specifically provide insight into the controls on erosive process dominance (i.e., plucking vs. abrasion) and on the development and evolution of knickpoints in non-transient settings.

Long-term variability of supratidal coastal boulder activation in Brittany (France)

NASA Astrophysics Data System (ADS)

Autret, Ronan; Dodet, Guillaume; Suanez, Serge; Roudaut, Gildas; Fichaut, Bernard

2018-03-01

High-energy supratidal coastal boulder deposit (SCBD) dynamics were investigated on Vierge Island and Pors Carn Point, north and south of western Brittany, France, respectively. Morphological changes induced by boulder transport and quarrying were quantified using high-resolution topographic survey data taken between 2012 and 2017. Additional in-situ wave parameters and water levels were also recorded over this period (2014-2017) in order to compute the maximum water levels and assess the relationship between SCBD morphological changes and specific hydrodynamic conditions. During extreme water levels (for maximum water levels exceeding a one in ten year event), SCBDs were broadly reworked (up to 40% of the total volume). During lower intensity events, for which maximum water levels were still very high, morphological changes represented 1% to 5% of the total volume. These morphological and hydrodynamic observations were then used to calibrate a chronology of SCBD activation events based on 70 years of hindcast winter maximum water levels. These long-term time-series showed great interannual variability in SCBD activation but no significant long-term trend. Winter-frequency SCBD activation was better correlated to the WEPA index (r = 0.46) than the NAO index (r = 0.1). Therefore, the WEPA index can be considered to be a more significant climate proxy for assessing storm-related geomorphic changes in the temperate latitudes of the N-E Atlantic basin (36°-52° N), including the Brittany coast. The potential of SCBDs as a morphological storm proxy for macrotidal high-energy rocky coasts is addressed.

Long term evolution and internal architecture of high-energy banner ridges of Mer d'Iroise (Western Brittany, France) : interplay of sea-level, basement morphology, biogenic productivity and hydrodynamics

NASA Astrophysics Data System (ADS)

Le Roy, P., Sr.; Le Dantec, N.; Franzetti, M.; Delacourt, C.; Ehrhold, A.

2016-12-01

The recent completion of a coupled seismic and swath bathymetric survey, conducted across the Mer d'Iroise (Atlantic continental shelf, France), provided new data for the study of the long term evolution of deep tidal sand ridges. Three major banner sand ridges composed of biogenic sands were investigated: the Banc du Four, the Haut Fond d'Ouessant and the Banc d'Ar Men. Seismic interpretation reveals a compound internal architecture of these sand ridges with a sedimentary core forming the lower units interpreted to be shoreface deposits and overlain by sandwaves. Sandwave climbing, which combines progradation and accretion, is the major process controlling the growth of the ridges. The elevation of the preserved dune foresets reaches values of about 20 to 30 m and indicate a combination of giant dunes characterized by numerous steep (up to 20°) clinoforms corresponding to a high-energy depositional environment. All of the radiocarbon ages of the biogenic surficial deposits of the Banc du Four range from 10,036 to 2,748 cal years B.P. and suggest it has grown during the last sea-level rise. The apparent absence of recent surface deposits could be caused by a change in benthic biogenic productivity or the non-conservation of recent deposits. The multiphase accretion of the ridge is closely linked to the progressive flooding of the coastal promontories and straits that structured the igneous basement. A comparable evolutionary scheme is observed for the Haut-Fond d'Ouessant where a counter-clock wise migration of dunes characterizes the surface of the ridge. In contrast, the Banc d'Ar Men located above a regular basement displays a simpler structure with a consistent Northwestward migration of steep clinoforms. Therefore, the sand ridges of the Mer d'Iroise should be thought of as a representative example of large-scale high-energy banner banks controlled by interaction of sea-level, basement morphology, biogenic productivity, tidal and wave hydrodynamics.

Taking the measure of a landscape: Comparing a simulated and natural landscape in the Virginia Coastal Plain

NASA Astrophysics Data System (ADS)

Howard, Alan D.; Tierney, Heather E.

2012-01-01

A landform evolution model is used to investigate the historical evolution of a fluvial landscape along the Potomac River in Virginia, USA. The landscape has developed on three terraces whose ages span 3.5 Ma. The simulation model specifies the temporal evolution of base level control by the river as having a high-frequency component of the response of the Potomac River to sea level fluctuations superimposed on a long-term epeirogenic uplift. The wave-cut benches are assumed to form instantaneously during sea level highstands. The region is underlain by relatively soft coastal plain sediments with high intrinsic erodibility. The survival of portions of these terrace surfaces, up to 3.5 Ma, is attributable to a protective cover of vegetation. The vegetation influence is parameterized as a critical shear stress to fluvial erosion whose magnitude decreases with increasing contributing area. The simulation model replicates the general pattern of dissection of the natural landscape, with decreasing degrees of dissection of the younger terrace surfaces. Channel incision and relief increase in headwater areas are most pronounced during the relatively brief periods of river lowstands. Imposition of the wave-cut terraces onto the simulated landscape triggers a strong incisional response. By qualitative and quantitative measures the model replicates, in a general way, the landform evolution and present morphology of the target region.

Animal evolution during domestication: the domesticated fox as a model.

PubMed

Trut, Lyudmila; Oskina, Irina; Kharlamova, Anastasiya

2009-03-01

We review the evolution of domestic animals, emphasizing the effect of the earliest steps of domestication on its course. Using the first domesticated species, the dog (Canis familiaris), for illustration, we describe the evolutionary peculiarities during the historical domestication, such as the high level and wide range of diversity. We suggest that the process of earliest domestication via unconscious and later conscious selection of human-defined behavioral traits may accelerate phenotypic variations. The review is based on the results of a long-term experiment designed to reproduce early mammalian domestication in the silver fox (Vulpes vulpes) selected for tameability or amenability to domestication. We describe changes in behavior, morphology and physiology that appeared in the fox during its selection for tameability, which were similar to those observed in the domestic dog. Based on the data of the fox experiment and survey of relevant data, we discuss the developmental, genetic and possible molecular genetic mechanisms underlying these changes. We ascribe the causative role in evolutionary transformation of domestic animals to the selection for behavior and to the neurospecific regulatory genes it affects.

In situ Visualization of State-of-Charge Heterogeneity within a LiCoO 2 Particle that Evolves upon Cycling at Different Rates

DOE PAGES

Xu, Yahong; Hu, Enyuan; Zhang, Kai; ...

2017-05-05

For designing new battery systems with higher energy density and longer cycle life, it is important to understand the degradation mechanism of the electrode material, especially at the individual particle level. Using in situ transmission X-ray microscopy (TXM) coupled to a pouch cell setup, the inhomogeneous Li distribution as well as the formation, population, and evolution of inactive domains in a single LiCoO 2 particle were visualized in this paper as it was cycled for many times. It is found that the percentage of the particle that fully recovered to the pristine state is strongly related to the cycling rate.more » Interestingly, we also observed the evolution of the inactive region within the particle during long-term cycling. The relationship between morphological degradation and chemical inhomogeneity, including the formation of unanticipated Co metal phase, is also observed. Finally, our work highlights the capability of in situ TXM for studying the degradation mechanism of materials in LIBs.« less

Animal evolution during domestication: the domesticated fox as a model

PubMed Central

Trut, Lyudmila; Oskina, Irina; Kharlamova, Anastasiya

2009-01-01

Summary We review the evolution of domestic animals, emphasizing the effect of the earliest steps of domestication on its course. Using the first domesticated species, the dog (Canis familiaris) as an illustration, we describe the evolutionary specificities of the historical domestication, such as the high level and wide range of diversity. We suggest that the process of earliest domestication via unconscious and later conscious selection of human-defined behavioral traits may accelerate phenotypic variations. The review is based on the results of the long-term experiment designed to reproduce early mammalian domestication in the silver fox (Vulpes vulpes) selected for tameability, or amenability to domestication. We describe changes in behavior, morphology and physiology that appeared in the fox during its selection for tameability and that were similar to those observed in the domestic dog. Based on the experimental fox data and survey of relevant data, we discuss the developmental, genetic and possible molecular-genetic mechanisms of these changes. We assign the causative role in evolutionary transformation of domestic animals to selection for behavior and to the neurospecific regulatory genes it affects. PMID:19260016

Contextualising primate origins--an ecomorphological framework.

PubMed

Soligo, Christophe; Smaers, Jeroen B

2016-04-01

Ecomorphology - the characterisation of the adaptive relationship between an organism's morphology and its ecological role - has long been central to theories of the origin and early evolution of the primate order. This is exemplified by two of the most influential theories of primate origins: Matt Cartmill's Visual Predation Hypothesis, and Bob Sussman's Angiosperm Co-Evolution Hypothesis. However, the study of primate origins is constrained by the absence of data directly documenting the events under investigation, and has to rely instead on a fragmentary fossil record and the methodological assumptions inherent in phylogenetic comparative analyses of extant species. These constraints introduce particular challenges for inferring the ecomorphology of primate origins, as morphology and environmental context must first be inferred before the relationship between the two can be considered. Fossils can be integrated in comparative analyses and observations of extant model species and laboratory experiments of form-function relationships are critical for the functional interpretation of the morphology of extinct species. Recent developments have led to important advancements, including phylogenetic comparative methods based on more realistic models of evolution, and improved methods for the inference of clade divergence times, as well as an improved fossil record. This contribution will review current perspectives on the origin and early evolution of primates, paying particular attention to their phylogenetic (including cladistic relationships and character evolution) and environmental (including chronology, geography, and physical environments) contextualisation, before attempting an up-to-date ecomorphological synthesis of primate origins. © 2016 Anatomical Society.

Competitive fitness during feast and famine: how SOS DNA polymerases influence physiology and evolution in Escherichia coli.

PubMed

Corzett, Christopher H; Goodman, Myron F; Finkel, Steven E

2013-06-01

Escherichia coli DNA polymerases (Pol) II, IV, and V serve dual roles by facilitating efficient translesion DNA synthesis while simultaneously introducing genetic variation that can promote adaptive evolution. Here we show that these alternative polymerases are induced as cells transition from exponential to long-term stationary-phase growth in the absence of induction of the SOS regulon by external agents that damage DNA. By monitoring the relative fitness of isogenic mutant strains expressing only one alternative polymerase over time, spanning hours to weeks, we establish distinct growth phase-dependent hierarchies of polymerase mutant strain competitiveness. Pol II confers a significant physiological advantage by facilitating efficient replication and creating genetic diversity during periods of rapid growth. Pol IV and Pol V make the largest contributions to evolutionary fitness during long-term stationary phase. Consistent with their roles providing both a physiological and an adaptive advantage during stationary phase, the expression patterns of all three SOS polymerases change during the transition from log phase to long-term stationary phase. Compared to the alternative polymerases, Pol III transcription dominates during mid-exponential phase; however, its abundance decreases to <20% during long-term stationary phase. Pol IV transcription dominates as cells transition out of exponential phase into stationary phase and a burst of Pol V transcription is observed as cells transition from death phase to long-term stationary phase. These changes in alternative DNA polymerase transcription occur in the absence of SOS induction by exogenous agents and indicate that cell populations require appropriate expression of all three alternative DNA polymerases during exponential, stationary, and long-term stationary phases to attain optimal fitness and undergo adaptive evolution.

Reduced swimming performance repeatedly evolves upon loss of migration in landlocked populations of Alewife

USGS Publications Warehouse

Velotta, Jonathan P.; McCormick, Stephen; Jones, Andrew W.; Schultz, Eric T.

2018-01-01

Whole-organism performance tasks are accomplished by the integration of morphological traits and physiological functions. Understanding how evolutionary change in morphology and physiology influences whole-organism performance will yield insight into the factors that shape its own evolution. We demonstrate that nonmigratory populations of alewife (Alosa pseudoharengus) have evolved reduced swimming performance in parallel, compared with their migratory ancestor. In contrast to theoretically and empirically based predictions, poor swimming among nonmigratory populations is unrelated to the evolution of osmoregulation and occurs despite the fact that nonmigratory alewives have a more fusiform (torpedo-like) body shape than their ancestor. Our results suggest that elimination of long-distance migration from the life cycle has shaped performance more than changes in body shape and physiological regulatory capacity.

X-Ray Enhancement and Long-term Evolution of Swift J1822.3-1606

NASA Astrophysics Data System (ADS)

Benli, Onur; Çalışkan, Ş.; Ertan, Ü.; Alpar, M. A.; Trümper, J. E.; Kylafis, N. D.

2013-12-01

We investigate the X-ray enhancement and the long-term evolution of the recently discovered second "low-B magnetar" Swift J1822.3-1606 in the frame of the fallback disk model. During a soft gamma burst episode, the inner disk matter is pushed back to larger radii, forming a density gradient at the inner disk. Subsequent relaxation of the inner disk could account for the observed X-ray enhancement light curve of Swift J1822.3-1606. We obtain model fits to the X-ray data with basic disk parameters similar to those employed to explain the X-ray outburst light curves of other anomalous X-ray pulsars and soft gamma repeaters. The long period (8.4 s) of the neutron star can be reached by the effect of the disk torques in the long-term accretion phase ((1-3) × 105 yr). The currently ongoing X-ray enhancement could be due to a transient accretion epoch, or the source could still be in the accretion phase in quiescence. Considering these different possibilities, we determine the model curves that could represent the long-term rotational and the X-ray luminosity evolution of Swift J1822.3-1606, which constrain the strength of the magnetic dipole field to the range of (1-2) × 1012 G on the surface of the neutron star.

Effect of PR interval prolongation on long-term outcomes in patients with left bundle branch block vs non-left bundle branch block morphologies undergoing cardiac resynchronization therapy.

PubMed

Rickard, John; Karim, Mohammad; Baranowski, Bryan; Cantillon, Daniel; Spragg, David; Tang, W H Wilson; Niebauer, Mark; Grimm, Richard; Trulock, Kevin; Wilkoff, Bruce; Varma, Niraj

2017-10-01

Although the influence of QRS duration (QRSd) and/or bundle branch block morphology on outcomes of cardiac resynchronization therapy (CRT) have been well studied, the effect of PR interval remains uncertain. The purpose of this study was to evaluate the impact of PR prolongation (PRp) before CRT on long-term outcomes, specifically taking into account bundle branch block morphology and QRSd. We extracted clinical data on consecutive patients undergoing CRT. Multivariate models were constructed to analyze the effect of PRp (≥200 ms) on the combined endpoint of death, heart transplant, or left ventricular assist device. Kaplan-Meier curves were constructed stratifying patients based on bundle branch block and QRSd (dichotomized by 150 ms). Of the 472 patients who met inclusion criteria, 197 (41.7%) had PR interval ≥200 ms. During follow-up (mean 5.1 ± 2.6 years) there were 214 endpoints, of which 109 (23.1%) occurred in patients with PRp. In multivariate analysis, PRp was independently associated with worsened outcomes (hazard ratio 1.34, 95% confidence interval 1.01-1.77, P = .04). When stratified by bundle branch block morphology, PRp was significantly associated with worsened outcomes (log-rank P <.001) in patients with LBBB but not in those with non-LBBB (log-rank P = .55). Among patients with LBBB, stratified by QRSd, patients without PRp had improved outcomes compared to those with PRp independent of QRSd (log-rank P <.001). PRp is an independent predictor of impaired long-term outcome after CRT among patients with LBBB but not in non-LBBB patients. Notably, among LBBB patients, PRp is a more important predictor than QRSd in assessing long-term outcomes. Copyright © 2017. Published by Elsevier Inc.

Anthropogenic influences on shoreline and nearshore evolution in the San Francisco Bay coastal system

USGS Publications Warehouse

Dallas, K.L.; Barnard, P.L.

2011-01-01

Analysis of four historical bathymetric surveys over a 132-year period has revealed significant changes to the morphology of the San Francisco Bar, an ebb-tidal delta at the mouth of San Francisco Bay estuary. From 1873 to 2005 the San Francisco Bar vertically-eroded an average of 80 cm over a 125 km2 area, which equates to a total volume loss of 100 ± 52 million m3 of fine- to coarse-grained sand. Comparison of the surveys indicates the entire ebb-tidal delta contracted radially, with the crest moving landward an average of 1 km. Long-term erosion of the ebb-tidal delta is hypothesized to be due to a reduction in the tidal prism of San Francisco Bay and a decrease in coastal sediment supply, both as a result of anthropogenic activities. Prior research indicates that the tidal prism of the estuary was reduced by 9% from filling, diking, and sedimentation. Compilation of historical records dating back to 1900 reveals that a minimum of 200 million m3 of sediment has been permanently removed from the San Francisco Bay coastal system through dredging, aggregate mining, and borrow pit mining. Of this total, ~54 million m3 of sand-sized or coarser sediment was removed from central San Francisco Bay. With grain sizes comparable to the ebb-tidal delta, and its direct connection to the bay mouth, removal of sediments from central San Francisco Bay may limit the sand supply to the delta and open coast beaches. SWAN wave modeling illustrates that changes to the morphology of the San Francisco Bar have altered the alongshore wave energy distribution at adjacent Ocean Beach, and thus may be a significant factor in a persistent beach erosion ‘hot spot’ occurring in the area. Shoreline change analyses show that the sandy shoreline in the shadow of the ebb-tidal delta experienced long-term (1850s/1890s to 2002) and short-term (1960s/1980s to 2002) accretion while the adjacent sandy shoreline exposed to open-ocean waves experienced long-term and short-term erosion. Therefore, the recently observed accelerating rates of bay sediment removal, ebb-tidal delta erosion, and open coast beach erosion are all correlated temporally.

The Role of Deformation Energetics in Long-Term Tectonic Modeling

NASA Astrophysics Data System (ADS)

Ahamed, S.; Choi, E.

2017-12-01

The deformation-related energy budget is usually considered in the simplest form or even entirely omitted from the energy balance equation. We derive a full energy balance equation that accounts not only for heat energy but also for mechanical (elastic, plastic and viscous) work. The derived equation is implemented in DES3D, an unstructured finite element solver for long-term tectonic deformation. We verify the implementation by comparing numerical solutions to the corresponding semi-analytic solutions in three benchmarks extended from the classical oedometer test. We also investigate the long-term effects of deformation energetics on the evolution of large offset normal faults. We find that the models considering the full energy balance equation tend to produce more secondary faults and an elongated core complex. Our results for the normal fault system confirm that persistent inelastic deformation has a significant impact on the long-term evolution of faults, motivating further exploration of the role of the full energy balance equation in other geodynamic systems.

Rapid response of tidal channel networks to sea-level variations (Venice Lagoon, Italy)

NASA Astrophysics Data System (ADS)

Rizzetto, Federica; Tosi, Luigi

2012-07-01

The aim of the present paper is to examine the effects of long- and short-term sea-level fluctuations (i.e. relative sea-level rise and tides) on the geomorphologic evolution of modern tidal channels through the joint interpretation of channel modifications, the 1938-2010 yearly time series of relative sea-level rise, and the variations of strength and frequency of high tides which occurred in the same period. We analyzed a salt marsh area not particularly modified by human interventions, located in the northern Venice Lagoon, Italy. The availability of a long historical record of high-resolution aerial photographs provided us the opportunity to reconstruct in detail the evolution of the drainage patterns from 1938 to the present. Results from our analyses gave us information about the degree of control of long- and short-term sea-level fluctuations on planimetric development of tidal channels and provided demonstration of the rapid response of the drainage network to these oscillations. We found that both relative sea-level rise and high tide frequency greatly influenced salt marsh margin shift and meander evolution of tidal channels in the long term, but short-term sinuosity changes of creeks were often also closely related to tide variations. Channels nearer the marsh margin were more exposed to the action of the increasing tides.

Energetic benefits and adaptations in mammalian limbs: Scale effects and selective pressures.

PubMed

Kilbourne, Brandon M; Hoffman, Louwrens C

2015-06-01

Differences in limb size and shape are fundamental to mammalian morphological diversity; however, their relevance to locomotor costs has long been subject to debate. In particular, it remains unknown if scale effects in whole limb morphology could partially underlie decreasing mass-specific locomotor costs with increasing limb length. Whole fore- and hindlimb inertial properties reflecting limb size and shape-moment of inertia (MOI), mass, mass distribution, and natural frequency-were regressed against limb length for 44 species of quadrupedal mammals. Limb mass, MOI, and center of mass position are negatively allometric, having a strong potential for lowering mass-specific locomotor costs in large terrestrial mammals. Negative allometry of limb MOI results in a 40% reduction in MOI relative to isometry's prediction for our largest sampled taxa. However, fitting regression residuals to adaptive diversification models reveals that codiversification of limb mass, limb length, and body mass likely results from selection for differing locomotor modes of running, climbing, digging, and swimming. The observed allometric scaling does not result from selection for energetically beneficial whole limb morphology with increasing size. Instead, our data suggest that it is a consequence of differing morphological adaptations and body size distributions among quadrupedal mammals, highlighting the role of differing limb functions in mammalian evolution. © 2015 The Author(s). Evolution © 2015 The Society for the Study of Evolution.

Unpredictable evolution in a 30-year study of Darwin's finches.

PubMed

Grant, Peter R; Grant, B Rosemary

2002-04-26

Evolution can be predicted in the short term from a knowledge of selection and inheritance. However, in the long term evolution is unpredictable because environments, which determine the directions and magnitudes of selection coefficients, fluctuate unpredictably. These two features of evolution, the predictable and unpredictable, are demonstrated in a study of two populations of Darwin's finches on the Galápagos island of Daphne Major. From 1972 to 2001, Geospiza fortis (medium ground finch) and Geospiza scandens (cactus finch) changed several times in body size and two beak traits. Natural selection occurred frequently in both species and varied from unidirectional to oscillating, episodic to gradual. Hybridization occurred repeatedly though rarely, resulting in elevated phenotypic variances in G. scandens and a change in beak shape. The phenotypic states of both species at the end of the 30-year study could not have been predicted at the beginning. Continuous, long-term studies are needed to detect and interpret rare but important events and nonuniform evolutionary change.

Evolution of a short-term study of lodgepole pine dwarf mistletoe vectors that turned into a long-term study of the remarkable gray jay on the Fraser Experimental Forest,Colorado, 1982-2009

Treesearch

Thomas H. Nicholls

2014-01-01

This is a summary of a 5-year short-term study that evolved into 28 years of long-term research on the US Department of Agriculture, Forest Service's Fraser Experimental Forest in Colorado. The study was begun in 1982 by Forest Service Research Scientists Thomas H. Nicholls and Frank G. Hawksworth to determine the importance of mammal and bird vectors in the long-...

Progressive Loss of Function in a Limb Enhancer during Snake Evolution.

PubMed

Kvon, Evgeny Z; Kamneva, Olga K; Melo, Uirá S; Barozzi, Iros; Osterwalder, Marco; Mannion, Brandon J; Tissières, Virginie; Pickle, Catherine S; Plajzer-Frick, Ingrid; Lee, Elizabeth A; Kato, Momoe; Garvin, Tyler H; Akiyama, Jennifer A; Afzal, Veena; Lopez-Rios, Javier; Rubin, Edward M; Dickel, Diane E; Pennacchio, Len A; Visel, Axel

2016-10-20

The evolution of body shape is thought to be tightly coupled to changes in regulatory sequences, but specific molecular events associated with major morphological transitions in vertebrates have remained elusive. We identified snake-specific sequence changes within an otherwise highly conserved long-range limb enhancer of Sonic hedgehog (Shh). Transgenic mouse reporter assays revealed that the in vivo activity pattern of the enhancer is conserved across a wide range of vertebrates, including fish, but not in snakes. Genomic substitution of the mouse enhancer with its human or fish ortholog results in normal limb development. In contrast, replacement with snake orthologs caused severe limb reduction. Synthetic restoration of a single transcription factor binding site lost in the snake lineage reinstated full in vivo function to the snake enhancer. Our results demonstrate changes in a regulatory sequence associated with a major body plan transition and highlight the role of enhancers in morphological evolution. PAPERCLIP. Copyright © 2016 Elsevier Inc. All rights reserved.

Long-Term Evolution of a Long-Term Evolution Model

DTIC Science & Technology

2011-01-01

equations for the movement of the dune toe yD and the berm crest location yB are dyD/dt=(qw-qo)/DD and dyB/dt=-(qw-qo)/(DB+DC) respectively, where qw...and sand properties, yB and yD = distances to the seaward end of the berm and the dune toe , respectively, with the y-axis pointing offshore, y50...relative to mean sea level, MSL); zD = dune toe elevation (with respect to MSL); T = swash period (taken to be the same as the wave period); and Cs

The D/H ratio and the evolution of water in the terrestrial planets.

PubMed

de Bergh, C

1993-02-01

The presence of liquid water at the surface of the Earth has played a major role in the biological evolution of the Earth. None of the other terrestrial planets--Mercury, Venus and Mars--has liquid water at its surface. However, it has been suggested, since the early seventies, from both geological and atmospheric arguments that, although Venus and Mars are presently devoid of liquid water, their surfaces could have been partially or completely covered by water at some time of their evolution. There are many possible diagnostics of the long-term evolution of the planets, either from the present characteristics of their surfaces or from their present atmospheric compositions. Among them, the present value of the D/H ratio is of particular interest, although its significance in terms of long term evolution has been challenged by some authors. Recent progress has been made in this field. We now have evidence for higher D/H ratios on Mars and Venus than on Earth, with an enrichment factor of the order of 5 on Mars, and about 100 on Venus. Any scenario for the evolution of these planets must take this into The most recent models on the evolution of Mars and Venus are reviewed in light of these new measurements.

Fifty million years of herbivory on coral reefs: fossils, fish and functional innovations

PubMed Central

Bellwood, D. R.; Goatley, C. H. R.; Brandl, S. J.; Bellwood, O.

2014-01-01

The evolution of ecological processes on coral reefs was examined based on Eocene fossil fishes from Monte Bolca, Italy and extant species from the Great Barrier Reef, Australia. Using ecologically relevant morphological metrics, we investigated the evolution of herbivory in surgeonfishes (Acanthuridae) and rabbitfishes (Siganidae). Eocene and Recent surgeonfishes showed remarkable similarities, with grazers, browsers and even specialized, long-snouted forms having Eocene analogues. These long-snouted Eocene species were probably pair-forming, crevice-feeding forms like their Recent counterparts. Although Eocene surgeonfishes likely played a critical role as herbivores during the origins of modern coral reefs, they lacked the novel morphologies seen in modern Acanthurus and Siganus (including eyes positioned high above their low-set mouths). Today, these forms dominate coral reefs in both abundance and species richness and are associated with feeding on shallow, exposed algal turfs. The radiation of these new forms, and their expansion into new habitats in the Oligocene–Miocene, reflects the second phase in the development of fish herbivory on coral reefs that is closely associated with the exploitation of highly productive short algal turfs. PMID:24573852

Fifty million years of herbivory on coral reefs: fossils, fish and functional innovations.

PubMed

Bellwood, D R; Goatley, C H R; Brandl, S J; Bellwood, O

2014-04-22

The evolution of ecological processes on coral reefs was examined based on Eocene fossil fishes from Monte Bolca, Italy and extant species from the Great Barrier Reef, Australia. Using ecologically relevant morphological metrics, we investigated the evolution of herbivory in surgeonfishes (Acanthuridae) and rabbitfishes (Siganidae). Eocene and Recent surgeonfishes showed remarkable similarities, with grazers, browsers and even specialized, long-snouted forms having Eocene analogues. These long-snouted Eocene species were probably pair-forming, crevice-feeding forms like their Recent counterparts. Although Eocene surgeonfishes likely played a critical role as herbivores during the origins of modern coral reefs, they lacked the novel morphologies seen in modern Acanthurus and Siganus (including eyes positioned high above their low-set mouths). Today, these forms dominate coral reefs in both abundance and species richness and are associated with feeding on shallow, exposed algal turfs. The radiation of these new forms, and their expansion into new habitats in the Oligocene-Miocene, reflects the second phase in the development of fish herbivory on coral reefs that is closely associated with the exploitation of highly productive short algal turfs.

Evaluating Long-Term Disability Insurance Plans.

ERIC Educational Resources Information Center

Powell, Jan

1992-01-01

This report analyzes the factors involved in reviewing benefits and services of employer-sponsored group long-term disability plans for higher education institutions. Opening sections describe the evolution of disability insurance and its shape today. Further sections looks at the complex nature of "value" within a plan, relationship…

Vascular proliferation and enhanced expression of endothelial nitric oxide synthase in human peritoneum exposed to long-term peritoneal dialysis.

PubMed

Combet, S; Miyata, T; Moulin, P; Pouthier, D; Goffin, E; Devuyst, O

2000-04-01

Long-term peritoneal dialysis (PD) is associated with alterations in peritoneal permeability and loss of ultrafiltration. These changes originate from increased peritoneal surface area, but the morphologic and molecular mechanisms involved remain unknown. The hypothesis that modifications of activity and/or expression of nitric oxide synthase (NOS) isozymes might play a role in these modifications, via enhanced local production of nitric oxide, was tested in this study. NOS activities were measured by the L-citrulline assay in peritoneal biopsies from seven control subjects, eight uremic patients immediately before the onset of PD, and 13 uremic patients on short-term (<18 mo, n = 6) or long-term(>18 mo, n = 7) PD. Peritoneal NOS activity is increased fivefold in long-term PD patients compared with control subjects. In uremic patients, NOS activity is positively correlated with the duration of PD. Increased NOS activity is mediated solely by Ca(2+)-dependent NOS and, as shown by immunoblotting, an upregulation of endothelial NOS. The biologic relevance of increased NOS in long-term PD was demonstrated by enhanced nitrotyrosine immunoreactivity and a significant increase in vascular density and endothelial area in the peritoneum. Immunoblotting and immunostaining studies demonstrated an upregulation of vascular endothelial growth factor (VEGF) mostly along the endothelium lining peritoneal blood vessels in long-term PD patients. In the latter, VEGF colocalized with the advanced glycation end product pentosidine deposits. These data provide a morphologic (angiogenesis and increased endothelial area) and molecular (enhanced NOS activity and endothelial NOS upregulation) basis for explaining the permeability changes observed in long-term PD. They also support the implication of local advanced glycation end product deposits and liberation of VEGF in that process.

Nitrifying moving bed biofilm reactor (MBBR) biofilm and biomass response to long term exposure to 1 °C.

PubMed

Hoang, V; Delatolla, R; Abujamel, T; Mottawea, W; Gadbois, A; Laflamme, E; Stintzi, A

2014-02-01

This study aims to investigate moving bed biofilm reactor (MBBR) nitrification rates, nitrifying biofilm morphology, biomass viability as well as bacterial community shifts during long-term exposure to 1 °C. Long-term exposure to 1 °C is the key operational condition for potential ammonia removal upgrade units to numerous northern region treatment systems. The average laboratory MBBR ammonia removal rate after long-term exposure to 1 °C was measured to be 18 ± 5.1% as compared to the average removal rate at 20 °C. Biofilm morphology and specifically the thickness along with biomass viability at various depths in the biofilm were investigated using variable pressure electron scanning microscope (VPSEM) imaging and confocal laser scanning microscope (CLSM) imaging in combination with viability live/dead staining. The biofilm thickness along with the number of viable cells showed significant increases after long-term exposure to 1 °C. Hence, this study observed nitrifying bacteria with higher activities at warm temperatures and a slightly greater quantity of nitrifying bacteria with lower activities at cold temperatures in nitrifying MBBR biofilms. Using DNA sequencing analysis, Nitrosomonas and Nitrosospira (ammonia oxidizers) as well as Nitrospira (nitrite oxidizer) were identified and no population shift was observed between 20 °C and after long-term exposure to 1 °C. Copyright © 2013 Elsevier Ltd. All rights reserved.

Short-term effects of fertilization on photosynthesis and leaf morphology of field-grown loblolly pine following long-term exposure to elevated CO2 concentration

Treesearch

Chris A. Maier; Sari Palmroth; Eric Ward

2008-01-01

We examined effects of a first nitrogen (N) fertilizer application on upper-canopy needle morphology and gas exchange in ~20-m-tall loblolly pine (Pinus taeda L.) exposed to elevated carbon dioxide concentration ([CO2]) for 9 years. Duke Forest free-air CO2 enrichment (FACE) plots were split and half of...

Influence of long-term treatment of the rat with clebopride on the morphology of the mammary gland.

PubMed

de Lima, T C; Morato, G S; Loch, S; Tames, D R

1990-01-01

The substituted benzamides or orthopramides are used to treat gastrointestinal and psychotic disorders. The orthopramide clebopride, a potent dopaminergic antagonist, blocks emesis in dogs and stereotyped behavior in rodents. Since the release of prolactin is inhibited by dopamine, antidopaminergic drugs may be useful to increase lactation in nursing mothers. The present work examines the morphological and histological alterations produced by long-term treatment of puerperal and virgin female rats with clebopride. Clebopride induced significant hyperplasia of parenchymal secretory units and stimulated milk secretion in both groups of rats. However, only in virgin rats was mammary weight significantly increased.

Convergent Metabolic Specialization through Distinct Evolutionary Paths in Pseudomonas aeruginosa

PubMed Central

Johansen, Helle Krogh; Molin, Søren

2018-01-01

ABSTRACT Evolution by natural selection under complex and dynamic environmental conditions occurs through intricate and often counterintuitive trajectories affecting many genes and metabolic solutions. To study short- and long-term evolution of bacteria in vivo, we used the natural model system of cystic fibrosis (CF) infection. In this work, we investigated how and through which trajectories evolution of Pseudomonas aeruginosa occurs when migrating from the environment to the airways of CF patients, and specifically, we determined reduction of growth rate and metabolic specialization as signatures of adaptive evolution. We show that central metabolic pathways of three distinct Pseudomonas aeruginosa lineages coevolving within the same environment become restructured at the cost of versatility during long-term colonization. Cell physiology changes from naive to adapted phenotypes resulted in (i) alteration of growth potential that particularly converged to a slow-growth phenotype, (ii) alteration of nutritional requirements due to auxotrophy, (iii) tailored preference for carbon source assimilation from CF sputum, (iv) reduced arginine and pyruvate fermentation processes, and (v) increased oxygen requirements. Interestingly, although convergence was evidenced at the phenotypic level of metabolic specialization, comparative genomics disclosed diverse mutational patterns underlying the different evolutionary trajectories. Therefore, distinct combinations of genetic and regulatory changes converge to common metabolic adaptive trajectories leading to within-host metabolic specialization. This study gives new insight into bacterial metabolic evolution during long-term colonization of a new environmental niche. PMID:29636437

Evolution of double white dwarf binaries undergoing direct-impact accretion: Implications for gravitational wave astronomy

NASA Astrophysics Data System (ADS)

Kremer, Kyle; Breivik, Katelyn; Larson, Shane L.; Kalogera, Vassiliki

2017-01-01

For close double white dwarf binaries, the mass-transfer phenomenon known as direct-impact accretion (when the mass transfer stream impacts the accretor directly rather than forming a disc) may play a pivotal role in the long-term evolution of the systems. In this analysis, we explore the long-term evolution of white dwarf binaries accreting through direct-impact and explore implications of such systems to gravitational wave astronomy. We cover a broad range of parameter space which includes initial component masses and the strength of tidal coupling, and show that these systems, which lie firmly within the LISA frequency range, show strong negative chirps which can last as long as several million years. Detections of double white dwarf systems in the direct-impact phase by detectors such as LISA would provide astronomers with unique ways of probing the physics governing close compact object binaries.

An embodied view of octopus neurobiology.

PubMed

Hochner, Binyamin

2012-10-23

Octopuses have a unique flexible body and unusual morphology, but nevertheless they are undoubtedly a great evolutionary success. They compete successfully with vertebrates in their ecological niche using a rich behavioral repertoire more typical of an intelligent predator which includes extremely effective defensive behavior--fast escape swimming and an astonishing ability to adapt their shape and color to their environment. The most obvious characteristic feature of an octopus is its eight long and flexible arms, but these pose a great challenge for achieving the level of motor and sensory information processing necessary for their behaviors. First, coordinating motion is a formidable task because of the infinite degrees of freedom that have to be controlled; and second, it is hard to use body coordinates in this flexible animal to represent sensory information in a central control system. Here I will review experimental results suggesting that these difficulties, arising from the animal's morphology, have imposed the evolution of unique brain/body/behavior relationships best explained as intelligent behavior which emerges from the octopus's embodied organization. The term 'intelligent embodiment' comes from robotics and refers to an approach to designing autonomous robots in which the behavior emerges from the dynamic physical and sensory interactions of the agent's materials, morphology and environment. Consideration of the unusual neurobiology of the octopus in the light of its unique morphology suggests that similar embodied principles are instrumental for understanding the emergence of intelligent behavior in all biological systems. Copyright © 2012 Elsevier Ltd. All rights reserved.

Groundwater controls on river channel pattern

NASA Astrophysics Data System (ADS)

Bätz, Nico; Colombini, Pauline; Cherubini, Paolo; Lane, Stuart N.

2017-04-01

Braided rivers are characterized by high rates of morphological change. However, despite the potential for frequent disturbance, vegetated patches may develop within this system and influence long-term channel dynamics and channel patterns through the "engineering effects" of vegetation. The stabilizing effect of developing vegetation on morphological change has been widely shown by flume experiments and (historic) aerial pictures analysis. Thus, there is a balance between disturbance and stabilization, mediated through vegetation, that may determine the long-term geomorphic and biogeomorphic evolution of the river. It follows that with a change in disturbance frequency relative to the rate of vegetation establishment, a systematic geomorphological shift could occur. Research has addressed how changes in disturbance frequency affect river channel pattern, but has rarely addressed the way in which the stabilizing effects of biogeomorphic succession interact with disturbance frequency to maintain a river in a more dynamic or a less dynamic state. Here, we quantify how the interplay between groundwater access, disturbance frequency and vegetation succession, drive changes in channel pattern. We studied this complex interplay on a transitional gravel-bed river system (braided, wandering, meandering) close to Geneva (Switzerland) - the Allondon River. Dendroecological analysis demonstrate that vegetation growth is driven by groundwater access. Groundwater access conditions the rate of vegetation stabilization at the sub-reach scale and, due to a reduction in flood-related disturbance frequency over the last 50 years, drives a change in channel pattern. Where groundwater is shallower, vegetation encroachment rates were high and as flood-related disturbance decreased, the river has shifted towards a meandering state. Where groundwater was deeper, vegetation growth was limited by water-access and thus vegetation encroachment rates were low. Even though there was a reduction in flood disturbance, it was still sufficient to maintain a wandering/braided state. Thus, it appears that access to groundwater can control river channel pattern through its impact upon the "engineering effects" of vegetation. The results are important for river management as they highlight the non-linearity of developing vegetation in dynamic alluvial floodplains and the importance of considering the wider environmental setting and associated feedbacks between biotic and abiotic river components in defining long-term geomorphological river response.

Leaf Evolution: Gases, Genes and Geochemistry

PubMed Central

BEERLING, DAVID J.

2005-01-01

• Aims This Botanical Briefing reviews how the integration of palaeontology, geochemistry and developmental biology is providing a new mechanistic framework for interpreting the 40- to 50-million-year gap between the origination of vascular land plants and the advent of large (megaphyll) leaves, a long-standing puzzle in evolutionary biology. • Scope Molecular genetics indicates that the developmental mechanisms required for leaf production in vascular plants were recruited long before the advent of large megaphylls. According to theory, this morphogenetic potential was only realized as the concentration of atmospheric CO2 declined during the late Palaeozoic. Surprisingly, plants effectively policed their own evolution since the decrease in CO2 was brought about as terrestrial floras evolved accelerating the rate of silicate rock weathering and enhancing sedimentary organic carbon burial, both of which are long-term sinks for CO2. • Conclusions The recognition that plant evolution responds to and influences CO2 over millions of years reveals the existence of an intricate web of vegetation feedbacks regulating the long-term carbon cycle. Several of these feedbacks destabilized CO2 and climate during the late Palaeozoic but appear to have quickened the pace of terrestrial plant and animal evolution at that time. PMID:15965270

Leaf evolution: gases, genes and geochemistry.

PubMed

Beerling, David J

2005-09-01

This Botanical Briefing reviews how the integration of palaeontology, geochemistry and developmental biology is providing a new mechanistic framework for interpreting the 40- to 50-million-year gap between the origination of vascular land plants and the advent of large (megaphyll) leaves, a long-standing puzzle in evolutionary biology. Molecular genetics indicates that the developmental mechanisms required for leaf production in vascular plants were recruited long before the advent of large megaphylls. According to theory, this morphogenetic potential was only realized as the concentration of atmospheric CO2 declined during the late Palaeozoic. Surprisingly, plants effectively policed their own evolution since the decrease in CO2 was brought about as terrestrial floras evolved accelerating the rate of silicate rock weathering and enhancing sedimentary organic carbon burial, both of which are long-term sinks for CO2. The recognition that plant evolution responds to and influences CO(2) over millions of years reveals the existence of an intricate web of vegetation feedbacks regulating the long-term carbon cycle. Several of these feedbacks destabilized CO2 and climate during the late Palaeozoic but appear to have quickened the pace of terrestrial plant and animal evolution at that time.

The changing flow of management information systems in long-term care facilities.

PubMed

Stokes, D F

1997-08-01

Over the past three decades, the long-term care community has seen continual increases in the complexity and sophistication of management information systems. These changes have been brought about by the ever-increasing demands on owners and managers to provide accurate and timely data to both regulators and financial investors. The evolution of these systems has increased rapidly in recent years as the nation attempts to reinvent the funding mechanisms for long-term care.

Implications for the tectonic transition zone of active orogeny in Hoping drainage basin, by landscape evolution at the multi-temporal timescale

NASA Astrophysics Data System (ADS)

Chang, Q.; Chen, R. F.; Lin, W.; Hsieh, P. S.

2015-12-01

In an actively orogeny the landscape are transient state of disequilibrium in response to climatic and tectonic inputs. At the catchment scale, sensitivity of river systems plays an important role in landscape evolution. Hoping drainage basin is located at the tectonic transition zone in the north-eastern Taiwan, where the behavior of Philippine Sea plate switches from overriding above the east-dipping Eurasian Continental plate to northward subducting under the Ryukyu arc. However, extensive deep-seated landslides, debris flow, and numerous large alluvial terraces can be observed, suggesting strong surface processes in this watershed. This effect on regional climate fundamentally changed the landscape by reconfiguring drainage patterns and creating a vast influx of sediments into the basin. In this study we review the morphological evidence from multi-temporal timescale, including in-situ cosmogenic nuclides denudation rate and suspension load data, coupled with the analysis of the longitudinal profiles. The main goal of this study is to compare Holocene erosion rates with thermochronology and radiometric dating of river terraces to investigate the erosion history of Hoping area. The result shows that short-term erosion rate is around twice as large as the long-term denudation rate, which might due to the climate-driven erosion events such as typhoon-induced landslide. We've also mapped detail morphological features by using the high-resolution LiDAR image, which help us to identify not only the landslide but also tectonic features such as lineation, fault scarps, and fracture zones. The tectonic surface features and field investigation results show that the drainage basin is highly fractured, suggesting that even though the vertical tectonic activity rate is small, the horizontal shortening influenced by both southward opening of the back-arc Okinawa trough and the north-western collision in this area is significant. This might cause the reducing in rock strength and increase the hillslope erosion during heavy rainfall. By studying the erosion rate of Hoping River watershed we can understand more about surface processes in dynamic landscape, and more over, to establish a comprehensive understanding about the evolution of the ongoing Taiwan arc-continental collision process.

Long-Term Dynamics of Autonomous Fractional Differential Equations

NASA Astrophysics Data System (ADS)

Liu, Tao; Xu, Wei; Xu, Yong; Han, Qun

This paper aims to investigate long-term dynamic behaviors of autonomous fractional differential equations with effective numerical method. The long-term dynamic behaviors predict where systems are heading after long-term evolution. We make some modification and transplant cell mapping methods to autonomous fractional differential equations. The mapping time duration of cell mapping is enlarged to deal with the long memory effect. Three illustrative examples, i.e. fractional Lotka-Volterra equation, fractional van der Pol oscillator and fractional Duffing equation, are studied with our revised generalized cell mapping method. We obtain long-term dynamics, such as attractors, basins of attraction, and saddles. Compared with some existing stability and numerical results, the validity of our method is verified. Furthermore, we find that the fractional order has its effect on the long-term dynamics of autonomous fractional differential equations.

Functional chloroplasts in metazoan cells - a unique evolutionary strategy in animal life

PubMed Central

2009-01-01

Background Among metazoans, retention of functional diet-derived chloroplasts (kleptoplasty) is known only from the sea slug taxon Sacoglossa (Gastropoda: Opisthobranchia). Intracellular maintenance of plastids in the slug's digestive epithelium has long attracted interest given its implications for understanding the evolution of endosymbiosis. However, photosynthetic ability varies widely among sacoglossans; some species have no plastid retention while others survive for months solely on photosynthesis. We present a molecular phylogenetic hypothesis for the Sacoglossa and a survey of kleptoplasty from representatives of all major clades. We sought to quantify variation in photosynthetic ability among lineages, identify phylogenetic origins of plastid retention, and assess whether kleptoplasty was a key character in the radiation of the Sacoglossa. Results Three levels of photosynthetic activity were detected: (1) no functional retention; (2) short-term retention lasting about one week; and (3) long-term retention for over a month. Phylogenetic analysis of one nuclear and two mitochondrial loci revealed reciprocal monophyly of the shelled Oxynoacea and shell-less Plakobranchacea, the latter comprising a monophyletic Plakobranchoidea and paraphyletic Limapontioidea. Only species in the Plakobranchoidea expressed short- or long-term kleptoplasty, most belonging to a speciose clade of slugs bearing parapodia (lateral flaps covering the dorsum). Bayesian ancestral character state reconstructions indicated that functional short-term retention arose once in the last common ancestor of Plakobranchoidea, and independently evolved into long-term retention in four derived species. Conclusion We propose a sequential progression from short- to long-term kleptoplasty, with different adaptations involved in each step. Short-term kleptoplasty likely arose as a deficiency in plastid digestion, yielding additional energy via the release of fixed carbon. Functional short-term retention was an apomorphy of the Plakobranchoidea, but the subsequent evolution of parapodia enabled slugs to protect kleptoplasts against high irradiance and further prolong plastid survival. We conclude that functional short-term retention was necessary but not sufficient for an adaptive radiation in the Plakobranchoidea, especially in the genus Elysia which comprises a third of all sacoglossan species. The adaptations necessary for long-term chloroplast survival arose independently in species feeding on different algal hosts, providing a valuable study system for examining the parallel evolution of this unique trophic strategy. PMID:19951407

Bioflumology: Microbial mat growth in flumes

NASA Astrophysics Data System (ADS)

Airo, A.; Weigert, S.; Beck, C.

2014-04-01

The emergence of oxygenic photosynthesis resulted in a transformational change of Earth's geochemical cycles and the subsequent evolution of life. However, it remains vigorously debated when this metabolic ability had evolved in cyanobacteria. This is largely because studies of Archean microfossil morphology, molecular biomarkers, and isotopic characteristics are frequently ambiguous. However, the high degree of morphological similarities between modern photosynthetic and Archean fossil mats has been interpreted to indicate phototactic microbial behavior or oxygenic photosynthesis. In order to better evaluate the relationship between mat morphology and metabolism, we here present a laboratory set-up for conducting month-long experiments in several sterilizable circular flumes designed to allow single-species cyanobacterial growth under adjustable fluid-flow conditions and protected from contamination.

Microstructural Evolution of Thor™ 115 Creep-Strength Enhanced Ferritic Steel

NASA Astrophysics Data System (ADS)

Ortolani, Matteo; D'Incau, Mirco; Ciancio, Regina; Scardi, Paolo

2017-12-01

A new ferritic steel branded as Thor™ 115 has been developed to enhance high-temperature resistance. The steel design combines an improved oxidation resistance with long-term microstructural stability. The new alloy, cast to different product forms such as plates and tubes, was extensively tested to assess the high-temperature time-dependent mechanical behavior (creep). The main strengthening mechanism is precipitation hardening by finely dispersed carbide and nitride phases. Information on the evolution of secondary phases and time-temperature-precipitation behavior of the alloy, essential to ensure long-term property stability, was obtained by scanning transmission electron microscopy with energy dispersive spectroscopy, and by X-ray Powder Diffraction on specimens aged up to 50,000 hours. A thermodynamic modeling supports presentation and evaluation of the experimental results. The evolution of precipitates in the new alloy confirms the retention of the strengthening by secondary phases, even after long-term exposure at high temperature. The deleterious conversion of nitrides into Z phase is shown to be in line with, or even slower than that of the comparable ASME grade 91 steel.

Exploring the role of trees in the evolution of meander bends: The Tagliamento River, Italy

NASA Astrophysics Data System (ADS)

Zen, Simone; Gurnell, Angela M.; Zolezzi, Guido; Surian, Nicola

2017-07-01

To date, the role of riparian trees in the formation of scroll bars, ridges, and swales during the evolution of meandering channels has been inferred largely from field observations with support from air photographs. In situ field observations are usually limited to relatively short periods of time, whereas the evolution of these morphological features may take decades. By combining field observations of inner bank morphology and overlying riparian woodland structure with a detailed historical analysis of airborne LiDAR data, panchromatic, and color images, we reconstruct the spatial and temporal evolution of the morphology and vegetation across four meander bends of the Tagliamento River, Italy. Specifically we reveal (i) the appearance of deposited trees and elongated vegetated patches on the inner bank of meander bends following flood events; (ii) temporal progression from deposited trees, through small to larger elongated vegetated patches (pioneer islands), to their coalescence into long, linear vegetated features that eventually become absorbed into the continuous vegetation cover of the riparian forest; and (iii) a spatial correspondence between the resulting scrolls and ridge and swale topography, and tree cover development and persistence. We provide a conceptual model of the mechanisms by which vegetation can contribute to the formation of sequence of ridges and swales on the convex bank of meander bends. We discuss how these insights into the biomorphological processes that control meander bends advance can inform modeling activities that aim to describe the lateral and vertical accretion of the floodplain during the evolution of vegetated river meanders.

An early Oligocene fossil demonstrates treeshrews are slowly evolving "living fossils".

PubMed

Li, Qiang; Ni, Xijun

2016-01-14

Treeshrews are widely considered a "living model" of an ancestral primate, and have long been called "living fossils". Actual fossils of treeshrews, however, are extremely rare. We report a new fossil species of Ptilocercus treeshrew recovered from the early Oligocene (~34 Ma) of China that represents the oldest definitive fossil record of the crown group of treeshrews and nearly doubles the temporal length of their fossil record. The fossil species is strikingly similar to the living Ptilocercus lowii, a species generally recognized as the most plesiomorphic extant treeshrew. It demonstrates that Ptilocercus treeshrews have undergone little evolutionary change in their morphology since the early Oligocene. Morphological comparisons and phylogenetic analysis support the long-standing idea that Ptilocercus treeshrews are morphologically conservative and have probably retained many characters present in the common stock that gave rise to archontans, which include primates, flying lemurs, plesiadapiforms and treeshrews. This discovery provides an exceptional example of slow morphological evolution in a mammalian group over a period of 34 million years. The persistent and stable tropical environment in Southeast Asia through the Cenozoic likely played a critical role in the survival of such a morphologically conservative lineage.

An early Oligocene fossil demonstrates treeshrews are slowly evolving “living fossils”

PubMed Central

Li, Qiang; Ni, Xijun

2016-01-01

Treeshrews are widely considered a “living model” of an ancestral primate, and have long been called “living fossils”. Actual fossils of treeshrews, however, are extremely rare. We report a new fossil species of Ptilocercus treeshrew recovered from the early Oligocene (~34 Ma) of China that represents the oldest definitive fossil record of the crown group of treeshrews and nearly doubles the temporal length of their fossil record. The fossil species is strikingly similar to the living Ptilocercus lowii, a species generally recognized as the most plesiomorphic extant treeshrew. It demonstrates that Ptilocercus treeshrews have undergone little evolutionary change in their morphology since the early Oligocene. Morphological comparisons and phylogenetic analysis support the long-standing idea that Ptilocercus treeshrews are morphologically conservative and have probably retained many characters present in the common stock that gave rise to archontans, which include primates, flying lemurs, plesiadapiforms and treeshrews. This discovery provides an exceptional example of slow morphological evolution in a mammalian group over a period of 34 million years. The persistent and stable tropical environment in Southeast Asia through the Cenozoic likely played a critical role in the survival of such a morphologically conservative lineage. PMID:26766238

Origin and evolution of Petrocosmea (Gesneriaceae) inferred from both DNA sequence and novel findings in morphology with a test of morphology-based hypotheses.

PubMed

Qiu, Zhi-Jing; Lu, Yuan-Xue; Li, Chao-Qun; Dong, Yang; Smith, James F; Wang, Yin-Zheng

2015-07-03

Petrocosmea Oliver (Gesneriaceae) currently comprises 38 species with four non-nominate varieties, nearly all of which have been described solely from herbarium specimens. However, the dried specimens have obscured the full range of extremely diverse morphological variation that exists in the genus and has resulted in a poor subgeneric classification system that does not reflect the evolutionary history of this group. It is important to develop innovative methods to find new morphological traits and reexamine and reevaluate the traditionally used morphological data based on new hypothesis. In addition, Petrocosmea is a mid-sized genus but exhibits extreme diverse floral variants. This makes the genus of particular interest in addressing the question whether there are any key factors that is specifically associated with their evolution and diversification. Here we present the first phylogenetic analyses of the genus based on dense taxonomic sampling and multiple genes combined with a comprehensive morphological investigation. Maximum-parsimony, maximum likelihood and Bayesian analyses of molecular data from two nuclear DNA and six cpDNA regions support the monophyly of Petrocosmea and recover five major clades within the genus, which is strongly corroborated by the reconstruction of ancestral states for twelve new morphological characters directly observed from living material. Ancestral area reconstruction shows that its most common ancestor was likely located east and southeast of the Himalaya-Tibetan plateau. The origin of Petrocosmea from a potentially Raphiocarpus-like ancestor might have involved a series of morphological modifications from caulescent to acaulescent habit as well as from a tetrandrous flower with a long corolla-tube to a diandrous flower with a short corolla-tube, also evident in the vestigial caulescent habit and transitional floral form in clade A that is sister to the remainder of the genus. Among the five clades in Petrocosmea, the patterns of floral morphological differentiation are consistent with discontinuous lineage-associated morphotypes as a repeated adaptive response to alternative environments. Our results suggest that the lineage-specific morphological differentiations reflected in the upper lip, a functional organ for insect pollination, are likely adaptive responses to pollinator shifts. We further recognize that the floral morphological diversification in Petrocosmea involves several evolutionary phenomena, i.e. evolutionary successive specialization, reversals, parallel evolution, and convergent evolution, which are probably associated with adaptation to pollination against the background of heterogeneous abiotic and biotic environments in the eastern wing regions of Himalaya-Tibetan plateau.

Quantifying long-term evolution of intra-urban spatial interactions

PubMed Central

Sun, Lijun; Jin, Jian Gang; Axhausen, Kay W.; Lee, Der-Horng; Cebrian, Manuel

2015-01-01

Understanding the long-term impact that changes in a city's transportation infrastructure have on its spatial interactions remains a challenge. The difficulty arises from the fact that the real impact may not be revealed in static or aggregated mobility measures, as these are remarkably robust to perturbations. More generally, the lack of longitudinal, cross-sectional data demonstrating the evolution of spatial interactions at a meaningful urban scale also hinders us from evaluating the sensitivity of movement indicators, limiting our capacity to understand the evolution of urban mobility in depth. Using very large mobility records distributed over 3 years, we quantify the impact of the completion of a metro line extension: the Circle Line (CCL) in Singapore. We find that the commonly used movement indicators are almost identical before and after the project was completed. However, in comparing the temporal community structure across years, we do observe significant differences in the spatial reorganization of the affected geographical areas. The completion of CCL enables travellers to re-identify their desired destinations collectively with lower transport cost, making the community structure more consistent. These changes in locality are dynamic and characterized over short timescales, offering us a different approach to identify and analyse the long-term impact of new infrastructures on cities and their evolution dynamics. PMID:25551142

Long-term cryopreservation of Greek fir embryogenic cell lines: recovery, maturation and genetic fidelity.

PubMed

Krajňáková, Jana; Sutela, Suvi; Aronen, Tuija; Gömöry, Dušan; Vianello, Angelo; Häggman, Hely

2011-08-01

In coniferous species, including Greek fir (Abies cephalonica Loud), the involvement of somatic embryo plants in breeding and reforestation programs is dependent on the success of long-term cryostorage of embryogenic cultures during clonal field testing. In the present study on Greek fir, we assayed the recovery, morphological characteristics and genetic fidelity of embryogenic cell lines 6 and 8 during proliferation and maturation after long-term cryostorage. Our results indicate successful recovery of both cell lines after 6 years in cryostorage. In the maturation phase, both cell lines were capable of producing somatic embryos although some differences were detected among experiments. However, these changes were more dependent on the differences in the components of the maturation media or in the experimental set-up than on the long-term cryostorage. During both proliferation and maturation phases, the morphological fidelity of the embryogenic cultures as well as of the somatic embryos were alike before and after cryopreservation. The genetic fidelity of the cryopreserved cell line 6 that was assayed by random amplified polymorphic DNA (i.e. RAPD) markers demonstrated some changes in the RAPD profiles. The results indicate possible genetic aberrations caused by long-term cryopreservation or somaclonal variation during the proliferation stage. However, in spite of these changes the embryogenic cultures did not lose their proliferation or maturation abilities. Copyright © 2011 Elsevier Inc. All rights reserved.

Darwinian Evolution of Mutualistic RNA Replicators with Different Genes

NASA Astrophysics Data System (ADS)

Mizuuchi, R.; Ichihashi, N.

2017-07-01

We report a sustainable long-term replication and evolution of two distinct cooperative RNA replicators encoding different genes. One of the RNAs evolved to maintain or increase the cooperativity, despite selective advantage of selfish mutations.

Long-term nitrogen addition causes the evolution of less-cooperative mutualists.

PubMed

Weese, Dylan J; Heath, Katy D; Dentinger, Bryn T M; Lau, Jennifer A

2015-03-01

Human activities have altered the global nitrogen (N) cycle, and as a result, elevated N inputs are causing profound ecological changes in diverse ecosystems. The evolutionary consequences of this global change have been largely ignored even though elevated N inputs are predicted to cause mutualism breakdown and the evolution of decreased cooperation between resource mutualists. Using a long-term (22 years) N-addition experiment, we find that elevated N inputs have altered the legume-rhizobium mutualism (where rhizobial bacteria trade N in exchange for photosynthates from legumes), causing the evolution of less-mutualistic rhizobia. Plants inoculated with rhizobium strains isolated from N-fertilized treatments produced 17-30% less biomass and had reduced chlorophyll content compared to plants inoculated with strains from unfertilized control plots. Because the legume-rhizobium mutualism is the major contributor of naturally fixed N to terrestrial ecosystems, the evolution of less-cooperative rhizobia may have important environmental consequences. © 2015 The Author(s).

Auxology: when auxin meets plant evo-devo.

PubMed

Finet, Cédric; Jaillais, Yvon

2012-09-01

Auxin is implicated throughout plant growth and development. Although the effects of this plant hormone have been recognized for more than a century, it is only in the past two decades that light has been shed on the molecular mechanisms that regulate auxin homeostasis, signaling, transport, crosstalk with other hormonal pathways as well as its roles in plant development. These discoveries established a molecular framework to study the role of auxin in land plant evolution. Here, we review recent advances in auxin biology and their implications in both micro- and macro-evolution of plant morphology. By analogy to the term 'hoxology', which refers to the critical role of HOX genes in metazoan evolution, we propose to introduce the term 'auxology' to take into account the crucial role of auxin in plant evo-devo. Copyright © 2012 Elsevier Inc. All rights reserved.

Characterizing floodplain evolution by joint analysis of SAR, GOES IR and local precipitation data: Case study of Rio Colorado, Bolivia

NASA Astrophysics Data System (ADS)

Koenders, R.; Oyen, A. M.; Weltje, G.; Sarna, K.; Donselaar, R.

2013-12-01

Dryland rivers in an endorheic basin experience downstream decrease of channel width and depth as the consequence of transmission losses by percolation and evapo-transpiration. Major changes in the river morphology take place during short peak discharge periods when the volume of water and sediment by far exceeds the river capacity and, as a consequence, meander bends are cut off, and the river path may change position by avulsion. Successive avulsions create a complex network of cross-cutting abandoned river channels. The Río Colorado, located in the southeast part of the Altiplano basin in Bolivia, is such a river system. This system consists of a very low-gradient lacustrine coastal plain onto which is deposited a 400 km2 sheet of fluvial sediment over the last 4000 year. Traditional studies to monitor the morphological changes at the terminus of the river system are based on field data acquisition of the fluvial sediments. This is time consuming and only covers a small area of the total fluvial morphology. The combination of field measurements and remote sensing imagery allows for the analysis of the development of the entire river system terminus at a longer temporal scale. Changes of alluvial surfaces affect the reflectance of objects and patterns on the ground, which is recorded by satellite images. In this study we show the response of the delta to rainfall events of various intensities in the Rio Colorado watershed. We combine precipitation data in the watershed with spaceborne synthetic aperture radar (SAR) data. We use two data sets that contain precipitation information: rainfall estimates based on Geostationary Operational Environmental Satellite (GOES) weather satellite IR window brightness temperatures and direct measures of rainfall from rain gauges in the vicinity of the delta. To detect changes on the surface water content we use the backscatter intensity or amplitude images from the European Remote Sensing Satellite (ERS) Synthetic Aperture Radar (SAR) dataset. Our analysis shows that the response of the radar intensity to a major rainfall event consists of three phases. Just after a major rainfall event the radar intensity in inundated areas of the delta drops significantly with respect to its mean amplitude. As the time after inundation increases the radar signal is brighter than the long term average, after 10-20 days the region has generally reverted to its long term average radar intensity. This first phase corresponds well with the physical response of radar signals. When the delta is inundated the radar signal bounces away from the sensor, reducing the backscatter. The reason for the increased amount of backscatter during the second phase is less straightforward. Our fieldwork in the region suggests it correlates with an increase in roughness of the terrain possibly due to evaporation leaving a layer of salts. In the final phase, the return to the long term average is possibly achieved by aeolian erosion of the surface, reducing the roughness and thereby the amount of backscatter. In this study we demonstrate the feasibility of augmenting in-situ measurements with several types of spaceborne remote sensing data to monitor and characterize the evolution of the Rio Colorado floodplain in terms of spatial and temporal resolution, and report our results on the join analysis.

Mechanical properties and microstructural evolution of modified 9Cr-1Mo steel after long-term aging for 50,000 h

NASA Astrophysics Data System (ADS)

Baek, Jong-Hyuk; Kim, Sung-Ho; Lee, Chan-Bock; Hahn, Do-Hee

2009-08-01

The mechanical properties and microstructural evolution of modified 9Cr-1Mo steel have been studied to investigate steel property changes after long-term isothermal aging at 600 °C for 50,000 h. The microhardness and strength were maintained constantly after aging but the impact energy was dramatically reduced by 62 % during the aging period. From the viewpoint of microstructural evolution after the aging process, Cr-enrichment and Fe-depletion took place within the M23C6-type precipitates in the as-aged steel and V-depletion also happened within the VX-type precipitates after aging. In addition, the precipitates of the M2Mo-type Laves phase and the segregation of the impurity atoms would be formed during the long-term aging period. It was considered that the sharp reduction of the impact energy could be related to the formation of the Laves phases and the impurity segregation after aging at 600 °C. The phase stability was also verified by the specific heat results up to 950 °C from a DSC test. It was concluded from this study that the modified 9Cr-1Mo steel would keep its microstructural stability at 600 °C during the long-term aging period of 50,000 h, which was equivalent to the in-service life of the SFR fuel cladding.

Boulder aprons indicate long-term gradual and non-catastrophic evolution of cliffed escarpments, Stołowe Mts, Poland

NASA Astrophysics Data System (ADS)

Duszyński, Filip; Migoń, Piotr

2015-12-01

Caprock-crowned escarpments are characteristic geomorphic features of the sandstone tableland of the Stołowe Mountains (SW Poland). Their mid- and lower slopes truncate weaker sedimentary formations but are littered with sandstone boulders of various size, often more than 5 m long, which form nearly continuous aprons. A model of escarpment retreat by rock fall has been widely accepted in literature but in the Stołowe Mountains it has never been tested against field evidence; in addition no rock fall events except one minor fall in 1921 have been recorded in historical times. In this paper we erected five hypotheses of how escarpments may have evolved through time to result in widespread boulder presence on the slopes. Mapping boulder extent and slope morphology, run-out distance simulations using Conefall software, and rock strength determinations using the Schmidt hammer carried out on boulders along eight representative slope profiles provide data about characteristics of the boulder covers. Systematic decrease in intact rock strength with an increasing distance from the sandstone cliffs suggests that the boulder aprons are diachronic and record long-term retreat of escarpments. There exists no conclusive evidence of widespread boulder downslope movement, although in a few localities shallow landslides have rafted boulders far away from the cliff lines. Modelling exercise shows that the actual extent of boulders is 2-3 times bigger than suggested by Conefall predictions. These findings, coupled with observations along the cliff lines themselves, lead us to propose a model of free face in situ disintegration as the most likely hypothesis to explain block detachment and release from rock faces. As cliff lines recede and the slope surface below is lowered, remnant boulders occupy a position increasingly further away from escarpment rims, but experience little actual movement. This model complements the existing models of tableland evolution which tend to emphasize catastrophic mass movement processes on cliffed escarpments.

Transport phenomena of graded sediments in tidal environments

NASA Astrophysics Data System (ADS)

Bonaldo, Davide; Dall'Angelo, Chiara; di Silvio, Giampaolo

2010-05-01

A long-term morphodynamic model simulating the ontogenesis and evolution of a tidal lagoon has been undergoing a continuous improvement in order to enrich its predictive ability and assess the relative importance of different factors, of both natural and anthropogenic origin, in defining the equilibrium configuration of such systems. A significant step forward in this direction is achieved by introducing the possibility to extend the analysis from uniform to graded sediments. In the latter case the representation of long-term phenomena is conceptually the same as for a sediment characterized by a single granulometric class, as far as it concerns the temporal averaging and the splitting of the transport in a dispersive component (mainly given by tidal action) and an eulerian residual convective component (resulting from rivers, long-shore currents, and asymmetry between flood and ebb flow fields). The horizontal sediment budget, however, is now coupled with a sediment budget among the different granulometric classes in the bottom, and precisely in a "mixing layer" whose thickness has to be properly defined. This new enhancement of the model allows, beside a more precise description of the morphodynamic processes, a certain number of further investigations. As a first point, it makes it possible to study the effect of the initial stratigraphic conditions on the genesis and evolution of the tidal basin, thus obtaining some informations about the persistence of "geological memory" in the system. Another matter, of environmental interest rather than strictly morphodynamic, concerns the possibility of creating "auxiliary classes" among the grainsize classes in order to label and track contaminated sediments, providing a prediction tool and a decisional support in case of environmental accidents. Such a sediment tracking could also be used to distinguish the sediments according to their fluvial or maritime origin, defining in this way a criterion for the classification of the various morphological features which can be found within the system. A sensitivity analysis of the main parameters is under way.

Long-term strength and damage accumulation in laminates

NASA Astrophysics Data System (ADS)

Dzenis, Yuris A.; Joshi, Shiv P.

1993-04-01

A modified version of the probabilistic model developed by authors for damage evolution analysis of laminates subjected to random loading is utilized to predict long-term strength of laminates. The model assumes that each ply in a laminate consists of a large number of mesovolumes. Probabilistic variation functions for mesovolumes stiffnesses as well as strengths are used in the analysis. Stochastic strains are calculated using the lamination theory and random function theory. Deterioration of ply stiffnesses is calculated on the basis of the probabilities of mesovolumes failures using the theory of excursions of random process beyond the limits. Long-term strength and damage accumulation in a Kevlar/epoxy laminate under tension and complex in-plane loading are investigated. Effects of the mean level and stochastic deviation of loading on damage evolution and time-to-failure of laminate are discussed. Long-term cumulative damage at the time of the final failure at low loading levels is more than at high loading levels. The effect of the deviation in loading is more pronounced at lower mean loading levels.

Everolimus-eluting stents in interventional cardiology

PubMed Central

Townsend, Jacob C; Rideout, Phillip; Steinberg, Daniel H

2012-01-01

Bare metal stents have a proven safety record, but limited long-term efficacy due to in-stent restenosis. First-generation drug-eluting stents successfully countered the restenosis rate, but were hampered by concerns about their long-term safety. Second generation drug-eluting stents have combined the low restenosis rate of the first generation with improved long-term safety. We review the evolution of drug-eluting stents with a focus on the safety, efficacy, and unique characteristics of everolimus-eluting stents. PMID:22910420

Space Life Sciences Research: The Importance of Long-Term Space Experiments

NASA Technical Reports Server (NTRS)

1993-01-01

This report focuses on the scientific importance of long-term space experiments for the advancement of biological science and the benefit of humankind. It includes a collection of papers that explore the scientific potential provided by the capability to manipulate organisms by removing a force that has been instrumental in the evolution and development of all organisms. Further, it provides the scientific justification for why the long-term space exposure that can be provided by a space station is essential to conduct significant research.

The long-term carbon cycle, fossil fuels and atmospheric composition.

PubMed

Berner, Robert A

2003-11-20

The long-term carbon cycle operates over millions of years and involves the exchange of carbon between rocks and the Earth's surface. There are many complex feedback pathways between carbon burial, nutrient cycling, atmospheric carbon dioxide and oxygen, and climate. New calculations of carbon fluxes during the Phanerozoic eon (the past 550 million years) illustrate how the long-term carbon cycle has affected the burial of organic matter and fossil-fuel formation, as well as the evolution of atmospheric composition.

Morphodynamic modeling of a large inside sandbar and its dextral morphology in a convergent estuary: Qiantang Estuary, China

NASA Astrophysics Data System (ADS)

Xie, Dongfeng; Gao, Shu; Wang, Zheng Bing; Pan, Cunhong; Wu, Xiuguang; Wang, Qiushun

2017-08-01

We investigate the evolution of a large-scale sand body, a unique type of sandbars in a convergent estuary. Specifically, we analyze and simulate the sand deposition system (defined as an inside bar) in the Qiantang Estuary (QE) in China. The deposit is 130 km long and up to 10 m thick and is characterized by a dextral morphology in the lower QE. Numerical simulation is carried out using an idealized horizontal 2-D morphodynamic model mimicking the present QE settings. Our results indicate that the morphological evolution is controlled by the combination of river discharge and tides. The seasonal and interannual cycles of river discharges play a major role on the inside bar evolution. The bar is eroding during high river discharge periods, but accretion prevails during low river discharge periods. Meanwhile, the highest part of the sand body can move downstream or upstream by several kilometers, modifying the seasonal sediment exchange patterns. We also show that the Coriolis force plays an important role on the dextral morphology patterns in wide, convergent estuaries. It induces a significant lateral water level difference and a large-scale gyre of residual sediment transport. Subsequently, the seaward tail of the inside bar shifts southward to help create a condition for the development of tidal flats in the lower reach of the estuary. The lateral bed level differences induced by Coriolis force are up to several meters. Coriolis effects also modify the behavior of flood and ebb tidal channels.

Non-linear hydrodynamical evolution of rotating relativistic stars: numerical methods and code tests

NASA Astrophysics Data System (ADS)

Font, José A.; Stergioulas, Nikolaos; Kokkotas, Kostas D.

2000-04-01

We present numerical hydrodynamical evolutions of rapidly rotating relativistic stars, using an axisymmetric, non-linear relativistic hydrodynamics code. We use four different high-resolution shock-capturing (HRSC) finite-difference schemes (based on approximate Riemann solvers) and compare their accuracy in preserving uniformly rotating stationary initial configurations in long-term evolutions. Among these four schemes, we find that the third-order piecewise parabolic method scheme is superior in maintaining the initial rotation law in long-term evolutions, especially near the surface of the star. It is further shown that HRSC schemes are suitable for the evolution of perturbed neutron stars and for the accurate identification (via Fourier transforms) of normal modes of oscillation. This is demonstrated for radial and quadrupolar pulsations in the non-rotating limit, where we find good agreement with frequencies obtained with a linear perturbation code. The code can be used for studying small-amplitude or non-linear pulsations of differentially rotating neutron stars, while our present results serve as testbed computations for three-dimensional general-relativistic evolution codes.

Maintaining the Link to The Floodplain: Scour Dynamics in Crevasses

NASA Astrophysics Data System (ADS)

Esposito, C. R.; Liang, M.; Yuill, B. T.; Meselhe, E. A.

2017-12-01

In river deltas, crevasses are the primary geomorphic feature that traverse the levee, connecting the river to its floodplain and facilitating the transfer of water, sediment, and chemical constituents from the trunk channel. Despite their fundamental position linking river and floodplain, the factors that are important to crevasse evolution are not well understood, and their enumeration is the subject of active research across multiple earth surface process subfields. Crevasses are often associated with a zone of intense scour proximal to the trunk channel. Surprisingly little is known about the morphological dynamics in this zone, but there is evidence from studies of river avulsion that scour zone evolution plays an important role in determining crevasse sustainability. Here we use Delft3D to simulate the development of managed crevasse splays - river diversions - for the purpose of landscape management in the Mississippi River Delta. Our model runs vary the erodibility of the substrate in the receiving basin and the extent and location of erosion protection along the conveyance channel. We find that substrate erodibility in the basin plays a critical role in determining the long-term performance of sediment diversions. Crevasses that create large scours tend to maintain their performance over several decades, but those that only create small scours are subject to rapidly declining performance as the scour pit fills in with coarse sediments. Finally, we compare the evolution of our modeled scour zone to the West Bay Sediment Diversion, where regular bathymetric surveys have documented the evolution of the scour zone since 2004.

Long-term dopamine transporter expression and normal cellular distribution of mitochondria in dopaminergic neuron transplants in Parkinson’s disease patients

PubMed Central

Hallett, Penelope J; Cooper, Oliver; Sadi, Damaso; Robertson, Harold; Mendez, Ivar; Isacson, Ole

2014-01-01

Summary To determine the long-term health and function of transplanted dopamine neurons in Parkinson’s disease (PD) patients, the expression of dopamine transporters (DAT) and mitochondrial morphology was examined in human fetal midbrain cellular transplants. DAT was robustly expressed in transplanted dopamine neuron terminals in the reinnervated host putamen and caudate, for at least 14 years after transplantation. The transplanted dopamine neurons showed a healthy and non-atrophied morphology at all time points. Labeling of the mitochondrial outer membrane protein Tom20 and alpha-synuclein showed typical cellular pathology in the patients’ own substantia nigra, which was not observed in transplanted dopamine neurons. These results show that the vast majority of transplanted neurons remain healthy long-term in PD patients, consistent with the clinically maintained function of fetal dopamine neuron transplants for up to 15–18 years in patients. These findings are critically important for the rational development of stem cell-based dopamine neuronal replacement therapies for PD. PMID:24910427

Long-term health of dopaminergic neuron transplants in Parkinson's disease patients.

PubMed

Hallett, Penelope J; Cooper, Oliver; Sadi, Damaso; Robertson, Harold; Mendez, Ivar; Isacson, Ole

2014-06-26

To determine the long-term health and function of transplanted dopamine neurons in Parkinson's disease (PD) patients, the expression of dopamine transporters (DATs) and mitochondrial morphology were examined in human fetal midbrain cellular transplants. DAT was robustly expressed in transplanted dopamine neuron terminals in the reinnervated host putamen and caudate for at least 14 years after transplantation. The transplanted dopamine neurons showed a healthy and nonatrophied morphology at all time points. Labeling of the mitochondrial outer membrane protein Tom20 and α-synuclein showed a typical cellular pathology in the patients' own substantia nigra, which was not observed in transplanted dopamine neurons. These results show that the vast majority of transplanted neurons remain healthy for the long term in PD patients, consistent with clinical findings that fetal dopamine neuron transplants maintain function for up to 15-18 years in patients. These findings are critically important for the rational development of stem-cell-based dopamine neuronal replacement therapies for PD. Copyright © 2014 The Authors. Published by Elsevier Inc. All rights reserved.

A dynamic monitoring approach for the surface morphology evolution measurement of plasma facing components by means of speckle interferometry

NASA Astrophysics Data System (ADS)

Wang, Hongbei; Cui, Xiaoqian; Feng, Chunlei; Li, Yuanbo; Zhao, Mengge; Luo, Guangnan; Ding, Hongbin

2017-11-01

Plasma Facing Components (PFCs) in a magnetically confined fusion plasma device will be exposed to high heat load and particle fluxes, and it would cause PFCs' surface morphology to change due to material erosion and redeposition from plasma wall interactions. The state of PFCs' surface condition will seriously affect the performance of long-pulse or steady state plasma discharge in a tokamak; it will even constitute an enormous threat to the operation and the safety of fusion plasma devices. The PFCs' surface morphology evolution measurement could provide important information about PFCs' real-time status or damage situation and it would help to a better understanding of the plasma wall interaction process and mechanism. Meanwhile through monitoring the distribution of dust deposition in a tokamak and providing an upper limit on the amount of loose dust, the PFCs' surface morphology measurement could indirectly contribute to keep fusion operational limits and fusion device safety. Aiming at in situ dynamic monitoring PFCs' surface morphology evolution, a laboratory experimental platform DUT-SIEP (Dalian University of Technology-speckle interferometry experimental platform) based on the speckle interferometry technique has been constructed at Dalian University of Technology (DUT) in China. With directional specific designing and focusing on the real detection condition of EAST (Experimental Advanced Superconducting Tokamak), the DUT-SIEP could realize a variable measurement range, widely increased from 0.1 μm to 300 μm, with high spatial resolution (<1 mm) and ultra-high time resolution (<2 s for EAST measuring conditions). Three main components of the DUT-SIEP are all integrated and synchronized by a time schedule control and data acquisition terminal and coupled with a three-dimensional phase unwrapping algorithm, the surface morphology information of target samples can be obtained and reconstructed in real-time. A local surface morphology of the real divertor tiles adopted from EAST has been measured, and the feasibility and reliability of this new experimental platform have been demonstrated.

Biosynthesis of Pd-Au alloys on carbon fiber paper: Towards an eco-friendly solution for catalysts fabrication

NASA Astrophysics Data System (ADS)

Zhuang, Zechao; Wang, Feifeng; Naidu, Ravendra; Chen, Zuliang

2015-09-01

Bimetallic nanomaterials with enhanced activity and stability have been extensively studied as emerging catalysts for hydrogen evolution reaction (HER). Expensive and environmentally unfriendly chemical synthesis routes inhibit their large-scale applications. In this work, we developed a facile and green synthesis of Pd-Au alloy nanoparticles (NPs) dispersed on carbon fiber paper (CFP) by plant-mediated bioreduction coupled with self-assembly. Engineering the morphology and composition of bimetallic catalysts synthesized by plant extracts on complex substrate is achieved. The resulting NPs are uniform in shape and have a spherical morphology with an average diameter of ∼180 nm, in which the molar ratio of Au/Pd is near 75:25 and the catalysts loading is about 0.5 mg cm-2. The Pd-Au/CFP hybrid electrode exhibits an excellent HER performance with a Tafel slope of 47 mV dec-1 and an exchange current density of 0.256 mA cm-2. Electrochemical stability tests through long-term potential cycles and potentiostatic electrolysis further confirm the high durability of the electrode. This development offers an efficient and eco-friendly catalysts synthesis route for constructing water-splitting cells and other electrocatalytic devices.

On modeling the organization of landscapes and vegetation patterns controlled by solar radiation

NASA Astrophysics Data System (ADS)

Istanbulluoglu, E.; Yetemen, O.

2014-12-01

Solar radiation is a critical driver of ecohydrologic processes and vegetation dynamics. Patterns of runoff generation and vegetation dictate landscape geomorphic response. Distinct patterns in the organization of soil moisture, vegetation type, and landscape morphology have been documented in close relation to aspect in a range of climates. Within catchments, from north to south facing slopes, studies have shown ecotone shifts from forest to shrub species, and steep diffusion-dominated landforms to fluvial landforms. Over the long term differential evolution of ecohydrology and geomorphology leads to observed asymmetric structure in the planform of channel network and valley morphology. In this talk we present examples of coupled modeling of ecohydrology and geomorphology driven by solar radiation. In a cellular automata model of vegetation dynamics we will first show how plants organize in north and south facing slopes and how biodiversity changes with elevation. When vegetation-erosion feedbacks are coupled emergent properties of the coupled system are observed in the modeled elevation and vegetation fields. Integrating processes at a range of temporal and spatial scales, coupled models of ecohydrologic and geomorphic dynamics enable examination of global change impacts on landscapes and ecosystems.

Stasis and convergence characterize morphological evolution in eupolypod II ferns.

PubMed

Sundue, Michael A; Rothfels, Carl J

2014-01-01

Patterns of morphological evolution at levels above family rank remain underexplored in the ferns. The present study seeks to address this gap through analysis of 79 morphological characters for 81 taxa, including representatives of all ten families of eupolypod II ferns. Recent molecular phylogenetic studies demonstrate that the evolution of the large eupolypod II clade (which includes nearly one-third of extant fern species) features unexpected patterns. The traditional 'athyrioid' ferns are scattered across the phylogeny despite their apparent morphological cohesiveness, and mixed among these seemingly conservative taxa are morphologically dissimilar groups that lack any obvious features uniting them with their relatives. Maximum-likelihood and maximum-parsimony character optimizations are used to determine characters that unite the seemingly disparate groups, and to test whether the polyphyly of the traditional athyrioid ferns is due to evolutionary stasis (symplesiomorphy) or convergent evolution. The major events in eupolypod II character evolution are reviewed, and character and character state concepts are reappraised, as a basis for further inquiries into fern morphology. Characters were scored from the literature, live plants and herbarium specimens, and optimized using maximum-parsimony and maximum-likelihood, onto a highly supported topology derived from maximum-likelihood and Bayesian analysis of molecular data. Phylogenetic signal of characters were tested for using randomization methods and fitdiscrete. The majority of character state changes within the eupolypod II phylogeny occur at the family level or above. Relative branch lengths for the morphological data resemble those from molecular data and fit an ancient rapid radiation model (long branches subtended by very short backbone internodes), with few characters uniting the morphologically disparate clades. The traditional athyrioid ferns were circumscribed based upon a combination of symplesiomorphic and homoplastic characters. Petiole vasculature consisting of two bundles is ancestral for eupolypods II and a synapomorphy for eupolypods II under deltran optimization. Sori restricted to one side of the vein defines the recently recognized clade comprising Rhachidosoraceae through Aspleniaceae, and sori present on both sides of the vein is a synapomorphy for the Athyriaceae sensu stricto. The results indicate that a chromosome base number of x =41 is synapomorphic for all eupolypods, a clade that includes over two-thirds of extant fern species. The integrated approach synthesizes morphological studies with current phylogenetic hypotheses and provides explicit statements of character evolution in the eupolypod II fern families. Strong character support is found for previously recognized clades, whereas few characters support previously unrecognized clades. Sorus position appears to be less complicated than previously hypothesized, and linear sori restricted to one side of the vein support the clade comprising Aspleniaceae, Diplaziopsidaceae, Hemidictyaceae and Rachidosoraceae - a lineage only recently identified. Despite x =41 being a frequent number among extant species, to our knowledge it has not previously been demonstrated as the ancestral state. This is the first synapomorphy proposed for the eupolypod clade, a lineage comprising 67 % of extant fern species. This study provides some of the first hypotheses of character evolution at the family level and above in light of recent phylogenetic results, and promotes further study in an area that remains open for original observation.

Stasis and convergence characterize morphological evolution in eupolypod II ferns

PubMed Central

Sundue, Michael A.; Rothfels, Carl J.

2014-01-01

Background and Aims Patterns of morphological evolution at levels above family rank remain underexplored in the ferns. The present study seeks to address this gap through analysis of 79 morphological characters for 81 taxa, including representatives of all ten families of eupolypod II ferns. Recent molecular phylogenetic studies demonstrate that the evolution of the large eupolypod II clade (which includes nearly one-third of extant fern species) features unexpected patterns. The traditional ‘athyrioid’ ferns are scattered across the phylogeny despite their apparent morphological cohesiveness, and mixed among these seemingly conservative taxa are morphologically dissimilar groups that lack any obvious features uniting them with their relatives. Maximum-likelihood and maximum-parsimony character optimizations are used to determine characters that unite the seemingly disparate groups, and to test whether the polyphyly of the traditional athyrioid ferns is due to evolutionary stasis (symplesiomorphy) or convergent evolution. The major events in eupolypod II character evolution are reviewed, and character and character state concepts are reappraised, as a basis for further inquiries into fern morphology. Methods Characters were scored from the literature, live plants and herbarium specimens, and optimized using maximum-parsimony and maximum-likelihood, onto a highly supported topology derived from maximum-likelihood and Bayesian analysis of molecular data. Phylogenetic signal of characters were tested for using randomization methods and fitdiscrete. Key Results The majority of character state changes within the eupolypod II phylogeny occur at the family level or above. Relative branch lengths for the morphological data resemble those from molecular data and fit an ancient rapid radiation model (long branches subtended by very short backbone internodes), with few characters uniting the morphologically disparate clades. The traditional athyrioid ferns were circumscribed based upon a combination of symplesiomorphic and homoplastic characters. Petiole vasculature consisting of two bundles is ancestral for eupolypods II and a synapomorphy for eupolypods II under deltran optimization. Sori restricted to one side of the vein defines the recently recognized clade comprising Rhachidosoraceae through Aspleniaceae, and sori present on both sides of the vein is a synapomorphy for the Athyriaceae sensu stricto. The results indicate that a chromosome base number of x =41 is synapomorphic for all eupolypods, a clade that includes over two-thirds of extant fern species. Conclusions The integrated approach synthesizes morphological studies with current phylogenetic hypotheses and provides explicit statements of character evolution in the eupolypod II fern families. Strong character support is found for previously recognized clades, whereas few characters support previously unrecognized clades. Sorus position appears to be less complicated than previously hypothesized, and linear sori restricted to one side of the vein support the clade comprising Aspleniaceae, Diplaziopsidaceae, Hemidictyaceae and Rachidosoraceae – a lineage only recently identified. Despite x =41 being a frequent number among extant species, to our knowledge it has not previously been demonstrated as the ancestral state. This is the first synapomorphy proposed for the eupolypod clade, a lineage comprising 67 % of extant fern species. This study provides some of the first hypotheses of character evolution at the family level and above in light of recent phylogenetic results, and promotes further study in an area that remains open for original observation. PMID:24197753

Long-Term Morphological and Microarchitectural Stability of Tissue-Engineered, Patient-Specific Auricles In Vivo

PubMed Central

Cohen, Benjamin Peter; Hooper, Rachel C.; Puetzer, Jennifer L.; Nordberg, Rachel; Asanbe, Ope; Hernandez, Karina A.; Spector, Jason A.

2016-01-01

Current techniques for autologous auricular reconstruction produce substandard ear morphologies with high levels of donor-site morbidity, whereas alloplastic implants demonstrate poor biocompatibility. Tissue engineering, in combination with noninvasive digital photogrammetry and computer-assisted design/computer-aided manufacturing technology, offers an alternative method of auricular reconstruction. Using this method, patient-specific ears composed of collagen scaffolds and auricular chondrocytes have generated auricular cartilage with great fidelity following 3 months of subcutaneous implantation, however, this short time frame may not portend long-term tissue stability. We hypothesized that constructs developed using this technique would undergo continued auricular cartilage maturation without degradation during long-term (6 month) implantation. Full-sized, juvenile human ear constructs were injection molded from high-density collagen hydrogels encapsulating juvenile bovine auricular chondrocytes and implanted subcutaneously on the backs of nude rats for 6 months. Upon explantation, constructs retained overall patient morphology and displayed no evidence of tissue necrosis. Limited contraction occurred in vivo, however, no significant change in size was observed beyond 1 month. Constructs at 6 months showed distinct auricular cartilage microstructure, featuring a self-assembled perichondrial layer, a proteoglycan-rich bulk, and rounded cellular lacunae. Verhoeff's staining also revealed a developing elastin network comparable to native tissue. Biochemical measurements for DNA, glycosaminoglycan, and hydroxyproline content and mechanical properties of aggregate modulus and hydraulic permeability showed engineered tissue to be similar to native cartilage at 6 months. Patient-specific auricular constructs demonstrated long-term stability and increased cartilage tissue development during extended implantation, and offer a potential tissue-engineered solution for the future of auricular reconstructions. PMID:26847742

Long-term effects of user preference-oriented recommendation method on the evolution of online system

NASA Astrophysics Data System (ADS)

Shi, Xiaoyu; Shang, Ming-Sheng; Luo, Xin; Khushnood, Abbas; Li, Jian

2017-02-01

As the explosion growth of Internet economy, recommender system has become an important technology to solve the problem of information overload. However, recommenders are not one-size-fits-all, different recommenders have different virtues, making them be suitable for different users. In this paper, we propose a novel personalized recommender based on user preferences, which allows multiple recommenders to exist in E-commerce system simultaneously. We find that output of a recommender to each user is quite different when using different recommenders, the recommendation accuracy can be significantly improved if each user is assigned with his/her optimal personalized recommender. Furthermore, different from previous works focusing on short-term effects on recommender, we also evaluate the long-term effect of the proposed method by modeling the evolution of mutual feedback between user and online system. Finally, compared with single recommender running on the online system, the proposed method can improve the accuracy of recommendation significantly and get better trade-offs between short- and long-term performances of recommendation.

Long-term adaptation of the influenza A virus by escaping cytotoxic T-cell recognition

NASA Astrophysics Data System (ADS)

Woolthuis, Rutger G.; van Dorp, Christiaan H.; Keşmir, Can; de Boer, Rob J.; van Boven, Michiel

2016-09-01

The evolutionary adaptation of the influenza A virus (IAV) to human antibodies is well characterised. Much less is known about the long-term evolution of cytotoxic T lymphocyte (CTL) epitopes, which are important antigens for clearance of infection. We construct an antigenic map of IAVs of all human subtypes using a compendium of 142 confirmed CTL epitopes, and show that IAV evolved gradually in the period 1932-2015, with infrequent antigenic jumps in the H3N2 subtype. Intriguingly, the number of CTL epitopes per virus decreases with more than one epitope per three years in the H3N2 subtype (from 84 epitopes per virus in 1968 to 64 in 2015), mostly attributed to the loss of HLA-B epitopes. We confirm these observations with epitope predictions. Our findings indicate that selection pressures imposed by CTL immunity shape the long-term evolution of IAV.

Individuals and populations: the role of long-term, individual-based studies of animals in ecology and evolutionary biology.

PubMed

Clutton-Brock, Tim; Sheldon, Ben C

2010-10-01

Many important questions in ecology and evolutionary biology can only be answered with data that extend over several decades and answering a substantial proportion of questions requires records of the life histories of recognisable individuals. We identify six advantages that long-term, individual based studies afford in ecology and evolution: (i) analysis of age structure; (ii) linkage between life history stages; (iii) quantification of social structure; (iv) derivation of lifetime fitness measures; (v) replication of estimates of selection; (vi) linkage between generations, and we review their impact on studies in six key areas of evolution and ecology. Our review emphasises the unusual opportunities and productivity of long-term, individual-based studies and documents the important role that they play in research on ecology and evolutionary biology as well as the difficulties they face. Copyright © 2010 Elsevier Ltd. All rights reserved.

The "Athlete's Heart": relation to gender and race.

PubMed

Di Paolo, F M; Pelliccia, Antonio

2007-08-01

Long-term athletic training is associated with changes in cardiac morphology, commonly described as "athlete's heart." Although numerous studies have investigated the effects of training on cardiac dimensions, most are limited to male Caucasian athletes, and few data are available regarding the effect of long-term exercise training on the woman's heart. This article reviews the athlete's heart in relation to gender and race.

Long-term Morphological Modeling at Coastal Inlets

DTIC Science & Technology

2015-05-15

the Coriolis effect which in this case deflects the ebb jet towards the north. a. Initial b. 10 years Figure 3. Idealized inlet representing...In order to quantify the physical effects of long-term, regional climactic changes in the environment, numerical morphodynamic models must be able...atmospheric pressure, wave, river, and tidal forcing; and Coriolis -Stokes force. The sediment transport model simulates nonequilibrium total-load

α6β1- and αV-integrins are required for long-term self-renewal of murine embryonic stem cells in the absence of LIF.

PubMed

Cattavarayane, Sandhanakrishnan; Palovuori, Riitta; Tanjore Ramanathan, Jayendrakishore; Manninen, Aki

2015-02-27

The growth properties and self-renewal capacity of embryonic stem (ES) cells are regulated by their immediate microenvironment such as the extracellular matrix (ECM). Integrins, a central family of cellular ECM receptors, have been implicated in these processes but their specific role in ES cell self-renewal remains unclear. Here we have studied the effects of different ECM substrates and integrins in mouse ES cells in the absence of Leukemia Inhibitory Factor (LIF) using short-term assays as well as long-term cultures. Removal of LIF from ES cell culture medium induced morphological differentiation of ES cells into polarized epistem cell-like cells. These cells maintained epithelial morphology and expression of key stemness markers for at least 10 passages in the absence of LIF when cultured on laminin, fibronectin or collagen IV substrates. The specific functional roles of α6-, αV- and β1-integrin subunits were dissected using stable lentivirus-mediated RNAi methodology. β1-integrins were required for ES cell survival in long-term cultures and for the maintenance of stem cell marker expression. Inhibition of α6-integrin expression compromised self-renewal on collagen while αV-integrins were required for robust ES cell adhesion on laminin. Analysis of the stemness marker expression revealed subtle differences between α6- and αV-depleted ES cells but the expression of both was required for optimal self-renewal in long-term ES cell cultures. In the absence of LIF, long-term ES cell cultures adapt an epistem cell-like epithelial phenotype and retain the expression of multiple stem cell markers. Long-term maintenance of such self-renewing cultures depends on the expression of β1-, α6- and αV-integrins.

Variability analysis of the reconstructed daily global solar radiation under all-sky and cloud-free conditions in Madrid during the period 1887-1950

NASA Astrophysics Data System (ADS)

Antón, M.; Román, R.; Sanchez-Lorenzo, A.; Calbó, J.; Vaquero, J. M.

2017-07-01

This study focuses on the analysis of the daily global solar radiation (GSR) reconstructed from sunshine duration measurements at Madrid (Spain) from 1887 to 1950. Additionally, cloud cover information recorded simultaneously by human observations for the study period was also analyzed and used to select cloud-free days. First, the day-to-day variability of reconstructed GSR data was evaluated, finding a strong relationship between GSR and cloudiness. The second step was to analyze the long-term evolution of the GSR data which exhibited two clear trends with opposite sign: a marked negative trend of - 36 kJ/m2 per year for 1887-1915 period and a moderate positive trend of + 13 kJ/m2 per year for 1916-1950 period, both statistically significant at the 95% confidence level. Therefore, there is evidence of "early dimming" and "early brightening" periods in the reconstructed GSR data for all-sky conditions in Madrid from the late 19th to the mid-20th centuries. Unlike the long-term evolution of GSR data, cloud cover showed non-statistically significant trends for the two analyzed sub-periods, 1887-1915 and 1916-1950. Finally, GSR trends were analyzed exclusively under cloud-free conditions in summer by means of the determination of the clearness index for those days with all cloud cover observations equal to zero oktas. The long-term evolution of the clearness index was in accordance with the "early dimming" and "early brightening" periods, showing smaller trends but still statistically significant. This result points out that aerosol load variability could have had a non-negligible influence on the long-term evolution of GSR even as far as from the late 19th century.

Molecular phylogeny of choanoflagellates, the sister group to Metazoa

PubMed Central

Carr, M.; Leadbeater, B. S. C.; Hassan, R.; Nelson, M.; Baldauf, S. L.

2008-01-01

Choanoflagellates are single-celled aquatic flagellates with a unique morphology consisting of a cell with a single flagellum surrounded by a “collar” of microvilli. They have long interested evolutionary biologists because of their striking resemblance to the collared cells (choanocytes) of sponges. Molecular phylogeny has confirmed a close relationship between choanoflagellates and Metazoa, and the first choanoflagellate genome sequence has recently been published. However, molecular phylogenetic studies within choanoflagellates are still extremely limited. Thus, little is known about choanoflagellate evolution or the exact nature of the relationship between choanoflagellates and Metazoa. We have sequenced four genes from a broad sampling of the morphological diversity of choanoflagellates including most species currently available in culture. Phylogenetic analyses of these sequences, alone and in combination, reject much of the traditional taxonomy of the group. The molecular data also strongly support choanoflagellate monophyly rejecting proposals that Metazoa were derived from a true choanoflagellate ancestor. Mapping of a complementary matrix of morphological and ecological traits onto the phylogeny allows a reinterpretation of choanoflagellate character evolution and predicts the nature of their last common ancestor. PMID:18922774

Evolution of neurocognitive function in long-term survivors of childhood acute lymphoblastic leukemia treated with chemotherapy only.

PubMed

Liu, Wei; Cheung, Yin Ting; Conklin, Heather M; Jacola, Lisa M; Srivastava, DeoKumar; Nolan, Vikki G; Zhang, Hongmei; Gurney, James G; Huang, I-Chan; Robison, Leslie L; Pui, Ching-Hon; Hudson, Melissa M; Krull, Kevin R

2018-06-01

The purpose of this study was to determine the evolution of neurocognitive problems from therapy completion to long-term follow-up in survivors of childhood acute lymphoblastic leukemia treated with chemotherapy only. We evaluated whether attention problems observed at therapy completion evolve into long-term executive dysfunction in 158 survivors treated on a single institution protocol. Treatment data (high-dose intravenous methotrexate exposure [serum concentration] and triple intrathecal chemotherapy injections) were collected. Parent report of behavior and direct cognitive testing of survivors was conducted at end of therapy, and survivors completed neurocognitive testing when > 5 years post-diagnosis. At the end of chemotherapy, survivors (52% female; mean age 9.2 years) demonstrated higher frequency of impairment in sustained attention (38%) and parent-reported inattention (20%) compared to population expectations (10%). At long-term follow-up, survivors (mean age 13.7 years; 7.6 years post-diagnosis) demonstrated higher impairment in executive function (flexibility 24%, fluency 21%), sustained attention (15%), and processing speed (15%). Sustained attention improved from end of therapy to long-term follow-up (p < 0.001). Higher methotrexate AUC and greater number of intrathecal injections were associated with attention problems (p = 0.009, p = 0.002, respectively) at the end of chemotherapy and executive function (p < 0.001, p = 0.02, respectively) problems at long-term follow-up. Attention problems at the end of therapy were not associated with executive function problems at long-term follow-up (p's > 0.05). The direct effect of chemotherapy exposure predicted outcomes at both time points. Survivors should be monitored for neurocognitive problems well into long-term survivorship, regardless of whether they show attention problems at the end of therapy. Treatment exposures are the best predictor of long-term complications.

Long-term sequelae of perinatal asphyxia in the aging rat.

PubMed

Weitzdoerfer, R; Gerstl, N; Hoeger, H; Mosgoeller, W; Dreher, W; Engidawork, E; Overgaard-Larsen, J; Lubec, B

2002-03-01

Information on the consequences of perinatal asphyxia (PA) on brain morphology and function in the aging rat is missing although several groups have hypothesized that PA may be responsible for neurological and psychiatric deficits in the adult. We therefore decided to study the effects of PA on the central nervous system (CNS) in terms of morphology, immunohistochemistry, neurology and behavior in the aging animal. Hippocampus and cerebellum were evaluated morphologically by histological, immunohistochemical and magnetic resonance imaging and cerebellum also by stereological tests. Neurological function was tested by an observational test battery and rota rod test. Cognitive functions were examined by multiple-T-maze and the Morris water maze (MWM). Increased serotonin transporter (SERT) immunoreactivity in the CA2 region of the hippocampus and a significant difference in the escape latency, when the platform of the MWM was moved to a new location, were observed in asphyxiated rats. We showed that deteriorated cognitive functions accompanied by aberrant expression of hippocampal SERT and impaired relearning are long-term sequelae of perinatal asphyxia, a finding that may form the basis for understanding CNS pathology in the aging subject, animal or human.

Genetic evolution of bacteriophage. I. Hybrids between unrelated bacteriophages P22 and Fels 2.

PubMed

Yamamoto, N

1969-01-01

A new bacteriophage species, designated F22, was isolated from phage P22 stocks grown on Salmonella typhimurium Q1 lysogenic for Fels 2 at a frequency of less than 10(-11). P22 has a very short tail with a hexagonal base plate and six spikes. Phage Fels 2 is morphologically similar to E. coli T-even phages, having a long tail with a contractile sheath and carrying no genetic region related to P22. Phage F22 is morphologically and serologically indistinguishable from Fels 2, but carries the c(c(1), c(2), and c(3)) markers of P22. The color markers h(21), g, and m(3) of P22 do not appear in F22. Thus, F22 is evidently a recombinant between the unrelated bacteriophages P22 and Fels 2. The recombination between unrelated bacteriophages could play an important role in the evolution of bacteriophages.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kvon, Evgeny Z.; Kamneva, Olga K.; Melo, Uirá S.

The evolution of body shape is thought to be tightly coupled to changes in regulatory sequences, but specific molecular events associated with major morphological transitions in vertebrates have remained elusive. In this paper, we identified snake-specific sequence changes within an otherwise highly conserved long-range limb enhancer of Sonic hedgehog (Shh). Transgenic mouse reporter assays revealed that the in vivo activity pattern of the enhancer is conserved across a wide range of vertebrates, including fish, but not in snakes. Genomic substitution of the mouse enhancer with its human or fish ortholog results in normal limb development. In contrast, replacement with snake orthologsmore » caused severe limb reduction. Synthetic restoration of a single transcription factor binding site lost in the snake lineage reinstated full in vivo function to the snake enhancer. Our results demonstrate changes in a regulatory sequence associated with a major body plan transition and highlight the role of enhancers in morphological evolution.« less

Functional constraints on the evolution of long butterfly proboscides: lessons from Neotropical skippers (Lepidoptera: Hesperiidae)

PubMed Central

Bauder, J A S; Morawetz, L; Warren, A D; Krenn, H W

2015-01-01

Extremely long proboscides are rare among butterflies outside of the Hesperiidae, yet representatives of several genera of skipper butterflies possess proboscides longer than 50 mm. Although extremely elongated mouthparts can be regarded as advantageous adaptations to gain access to nectar in deep-tubed flowers, the scarcity of long-proboscid butterflies is a phenomenon that has not been adequately accounted for. So far, the scarceness was explained by functional costs arising from increased flower handling times caused by decelerated nectar intake rates. However, insects can compensate for the negative influence of a long proboscis through changes in the morphological configuration of the feeding apparatus. Here, we measured nectar intake rates in 34 species representing 21 Hesperiidae genera from a Costa Rican lowland rainforest area to explore the impact of proboscis length, cross-sectional area of the food canal and body size on intake rate. Long-proboscid skippers did not suffer from reduced intake rates due to their large body size and enlarged food canals. In addition, video analyses of the flower-visiting behaviour revealed that suction times increased with proboscis length, suggesting that long-proboscid skippers drink a larger amount of nectar from deep-tubed flowers. Despite these advantages, we showed that functional costs of exaggerated mouthparts exist in terms of longer manipulation times per flower. Finally, we discuss the significance of scaling relationships on the foraging efficiency of butterflies and why some skipper taxa, in particular, have evolved extremely long proboscides. PMID:25682841

Phylogeny of Selaginellaceae: There is value in morphology after all!

PubMed

Weststrand, Stina; Korall, Petra

2016-12-01

The cosmopolitan lycophyte family Selaginellaceae, dating back to the Late Devonian-Early Carboniferous, is notorious for its many species with a seemingly undifferentiated gross morphology. This morphological stasis has for a long time hampered our understanding of the evolutionary history of the single genus Selaginella. Here we present a large-scale phylogenetic analysis of Selaginella, and based on the resulting phylogeny, we discuss morphological evolution in the group. We sampled about one-third of the approximately 750 recognized Selaginella species. Evolutionary relationships were inferred from both chloroplast (rbcL) and single-copy nuclear gene data (pgiC and SQD1) using a Bayesian inference approach. The morphology of the group was studied and important features mapped onto the phylogeny. We present an overall well-supported phylogeny of Selaginella, and the phylogenetic positions of some previously problematic taxa (i.e., S. sinensis and allies) are now resolved with strong support. We show that even though the evolution of most morphological characters involves reversals and/or parallelisms, several characters are phylogenetically informative. Seven major clades are identified, which each can be uniquely diagnosed by a suite of morphological features. There is value in morphology after all! Our hypothesis of the evolutionary relationships of Selaginella is well founded based on DNA sequence data, as well as morphology, and is in line with previous findings. It will serve as a firm basis for further studies on Selaginella with respect to, e.g., the poorly known alpha taxonomy, as well as evolutionary questions such as historical biogeographic reconstructions. © 2016 Weststrand and Korall. Published by the Botanical Society of America. This work is licensed under a Creative Commons Attribution License (CC-BY 4.0).

Modelling of sediment transport and morphological evolution under the combined action of waves and currents

NASA Astrophysics Data System (ADS)

Franz, Guilherme; Delpey, Matthias T.; Brito, David; Pinto, Lígia; Leitão, Paulo; Neves, Ramiro

2017-09-01

Coastal defence structures are often constructed to prevent beach erosion. However, poorly designed structures may cause serious erosion problems in the downdrift direction. Morphological models are useful tools to predict such impacts and assess the efficiency of defence structures for different scenarios. Nevertheless, morphological modelling is still a topic under intense research effort. The processes simulated by a morphological model depend on model complexity. For instance, undertow currents are neglected in coastal area models (2DH), which is a limitation for simulating the evolution of beach profiles for long periods. Model limitations are generally overcome by predefining invariant equilibrium profiles that are allowed to shift offshore or onshore. A more flexible approach is described in this paper, which can be generalised to 3-D models. The present work is based on the coupling of the MOHID modelling system and the SWAN wave model. The impacts of different designs of detached breakwaters and groynes were simulated in a schematic beach configuration following a 2DH approach. The results of bathymetry evolution are in agreement with the patterns found in the literature for several existing structures. The model was also tested in a 3-D test case to simulate the formation of sandbars by undertow currents. The findings of this work confirmed the applicability of the MOHID modelling system to study sediment transport and morphological changes in coastal zones under the combined action of waves and currents. The same modelling methodology was applied to a coastal zone (Costa da Caparica) located at the mouth of a mesotidal estuary (Tagus Estuary, Portugal) to evaluate the hydrodynamics and sediment transport both in calm water conditions and during events of highly energetic waves. The MOHID code is available in the GitHub repository.

Sedimentation and erosion trends over 50 years in the macrotidal Gironde estuary

NASA Astrophysics Data System (ADS)

Sottolichio, Aldo; Hanquiez, Vincent; Arriagada, Joselyn; Jalon-Rojas, Isabel

2017-04-01

Recent studies have emphasized on the drastic morphodynamic evolution of many european urbanized estuaries, which have become more turbid during the XXth century because of human-induced deepening and narrowing. For some systems, the availability of data has allowed detailed analysis of evolution, while for some other estuaries, knowledge remains limited. For the latter, it is difficult to elucidate any effect due to climate change, extreme events or human activities. Among them, the Gironde estuary is a macrotidal funnel-shape system, the largest estuary of Western Europe, and characterized by high levels of turbidity. Despite numerous investigations on sedimentary processes carried out in this estuary in the past, there is poor knowledge on the evolution of its morphology and tides over the XXth century. Recently, an investigation on tidal patterns has started in the Garonne tidal river, where it is known that gravel extraction during the sixties has deeply modified the mean depth of the channel. In the meantime, there is evidence of a long-term shift of the turbidity maximum in this area, mainly due to a reduction of river flow in the last 40 years. However, for the main estuarine portion, which represents 80% of the total surface, morphology evolution and associated physical processes remain under-investigated. In this study the morphological evolution of the Gironde estuary has been documented and investigated for the first time, based on some bathymetric and tidal data collected from the archives of the port of Bordeaux. Six bathymetric maps covering a period of 50 years, from the 1953 to year 2000 were compared, highlighting areas of accretion and erosion. Results show that the zone of maximum volume of deposited sediment has migrated continuously towards the upstream portion of the estuary, which is coherent with the intensification of the low river flow periods and the upstream shift of the turbidity maximum zone to the riverine sections. In the meantime, despite relative weak visible transformation of the general morphology of the estuary, cross section areas have experimented high variation rate (up to 40% in some locations) with contrasted patterns between the upstream and the downstream portion of the estuary. While in the period 1962-1970 the downstream estuary experiences accretion and the upstream experiences erosion, the period 1980-1994 shows opposite trend, with a shift around an area at approximately km 45 downtream from Bordeaux, which acts as a nodal zone, where no net trend is observed. On the basis of available data, little effect of human activity (mainly channel dredging and gravel extraction) and extreme events are observed, and the averaged position of the turbidity maximum seems to be the main driver of changes in sections. Changes on tidal range as a response of change on morphology are relatively weak, with little tidal amplification through 50 years between the mouth and Bordeaux. However differences on tidal asymmetry (rate of flood duration / ebb duration) seem more significant, and could explain the contrasted areas and the shift around km 45.

A Case of Successful Teaching Policy: Connecticut's Long-Term Efforts To Improve Teaching and Learning. A Research Report.

ERIC Educational Resources Information Center

Wilson, Suzanne M.; Darling-Hammond, Linda; Berry, Barnett

In this monograph, the authors describe Connecticut's long-term efforts to implement a comprehensive set of teaching quality policies to support improved student learning. The authors begin by describing the 15-year evolution of policies designed to recruit, prepare, and support teachers, while also creating greater accountability for the…

A synthesis of the theories and concepts of early human evolution.

PubMed

Maslin, Mark A; Shultz, Susanne; Trauth, Martin H

2015-03-05

Current evidence suggests that many of the major events in hominin evolution occurred in East Africa. Hence, over the past two decades, there has been intensive work undertaken to understand African palaeoclimate and tectonics in order to put together a coherent picture of how the environment of Africa has varied over the past 10 Myr. A new consensus is emerging that suggests the unusual geology and climate of East Africa created a complex, environmentally very variable setting. This new understanding of East African climate has led to the pulsed climate variability hypothesis that suggests the long-term drying trend in East Africa was punctuated by episodes of short alternating periods of extreme humidity and aridity which may have driven hominin speciation, encephalization and dispersals out of Africa. This hypothesis is unique as it provides a conceptual framework within which other evolutionary theories can be examined: first, at macro-scale comparing phylogenetic gradualism and punctuated equilibrium; second, at a more focused level of human evolution comparing allopatric speciation, aridity hypothesis, turnover pulse hypothesis, variability selection hypothesis, Red Queen hypothesis and sympatric speciation based on sexual selection. It is proposed that each one of these mechanisms may have been acting on hominins during these short periods of climate variability, which then produce a range of different traits that led to the emergence of new species. In the case of Homo erectus (sensu lato), it is not just brain size that changes but life history (shortened inter-birth intervals, delayed development), body size and dimorphism, shoulder morphology to allow thrown projectiles, adaptation to long-distance running, ecological flexibility and social behaviour. The future of evolutionary research should be to create evidence-based meta-narratives, which encompass multiple mechanisms that select for different traits leading ultimately to speciation.

A synthesis of the theories and concepts of early human evolution

PubMed Central

Maslin, Mark A.; Shultz, Susanne; Trauth, Martin H.

2015-01-01

Current evidence suggests that many of the major events in hominin evolution occurred in East Africa. Hence, over the past two decades, there has been intensive work undertaken to understand African palaeoclimate and tectonics in order to put together a coherent picture of how the environment of Africa has varied over the past 10 Myr. A new consensus is emerging that suggests the unusual geology and climate of East Africa created a complex, environmentally very variable setting. This new understanding of East African climate has led to the pulsed climate variability hypothesis that suggests the long-term drying trend in East Africa was punctuated by episodes of short alternating periods of extreme humidity and aridity which may have driven hominin speciation, encephalization and dispersals out of Africa. This hypothesis is unique as it provides a conceptual framework within which other evolutionary theories can be examined: first, at macro-scale comparing phylogenetic gradualism and punctuated equilibrium; second, at a more focused level of human evolution comparing allopatric speciation, aridity hypothesis, turnover pulse hypothesis, variability selection hypothesis, Red Queen hypothesis and sympatric speciation based on sexual selection. It is proposed that each one of these mechanisms may have been acting on hominins during these short periods of climate variability, which then produce a range of different traits that led to the emergence of new species. In the case of Homo erectus (sensu lato), it is not just brain size that changes but life history (shortened inter-birth intervals, delayed development), body size and dimorphism, shoulder morphology to allow thrown projectiles, adaptation to long-distance running, ecological flexibility and social behaviour. The future of evolutionary research should be to create evidence-based meta-narratives, which encompass multiple mechanisms that select for different traits leading ultimately to speciation. PMID:25602068

Separators for Li-Ion and Li-Metal Battery Including Ionic Liquid Based Electrolytes Based on the TFSI− and FSI− Anions

PubMed Central

Kirchhöfer, Marija; von Zamory, Jan; Paillard, Elie; Passerini, Stefano

2014-01-01

The characterization of separators for Li-ion or Li-metal batteries incorporating hydrophobic ionic liquid electrolytes is reported herein. Ionic liquids made of N-butyl-N-methylpyrrolidinium (PYR14+) or N-methoxyethyl-N-methylpyrrolidinium (PYR12O1+), paired with bis(trifluoromethanesulfonyl)imide (TFSI−) or bis(fluorosulfonyl)imide (FSI−) anions, were tested in combination with separators having different chemistries and morphologies in terms of wetting behavior, Gurley and McMullin number, as well as Li/(Separator + Electrolyte) interfacial properties. It is shown that non-functionalized microporous polyolefin separators are poorly wetted by FSI−-based electrolytes (contrary to TFSI−-based electrolytes), while the ceramic coated separator Separion® allows good wetting with all electrolytes. Furthermore, by comparing the lithium solid electrolyte interphase (SEI) resistance evolution at open circuit and during cycling, depending on separator morphologies and chemistries, it is possible to propose a scale for SEI forming properties in the order: PYR12O1FSI > PYR14FSI > PYR14TFSI > PYR12O1TFSI. Finally, the impact the separator morphology is evidenced by the SEI resistance evolution and by comparing Li electrodes cycled using separators with two different morphologies. PMID:25153637

Photoluminescent Au-Ge composite nanodots formation on SiO2 surface by ion induced dewetting

NASA Astrophysics Data System (ADS)

Datta, D. P.; Siva, V.; Singh, A.; Kanjilal, D.; Sahoo, P. K.

2017-09-01

Medium energy ion irradiation on a bilayer of Au and Ge on SiO2 is observed to result in gradual morphological evolution from an interconnected network to a nanodot array on the insulator surface. Structural and compositional analyses reveal composite nature of the nanodots, comprising of both Au and Ge. The growing nanostructures are found to be photoluminescent at room temperature where the emission intensity and wavelengths vary with morphology. The growth of such nanostructures can be understood in terms of dewetting of the metal layer under ion irradiation due to ion-induced melting along the ion tracks. The visible PL emission is found to be related with evolution of the Au-Ge nanodots. The study indicates a route towards single step synthesis of metal-semiconductor nanodots on insulator surface.

Malagasy cichlids differentially limit impacts of body shape evolution on oral jaw functional morphology.

PubMed

Martinez, Christopher M; Sparks, John S

2017-09-01

Patterns of trait covariation, such as integration and modularity, are vital factors that influence the evolution of vertebrate body plans. In functional systems, decoupling of morphological modules buffers functional change in one trait by reducing correlated variation with another. However, for complex morphologies with many-to-one mapping of form to function (MTOM), resistance to functional change may also be achieved by constraining morphological variation within a functionally stable region of morphospace. For this research, we used geometric morphometrics to evaluate the evolution of body shape and its relationship with jaw functional morphology in two independent radiations of endemic Malagasy cichlid (Teleostei: Cichlidae). Our results suggested that the two subfamilies used different strategies to mitigate impacts of body shape variation on a metric of jaw function, maxillary kinematic transmission (MKT): (1) modularity between cranial and postcranial morphologies, and (2) integration of body and jaw evolution, with jaw morphologies varying in a manner that limits change in MKT. This research shows that, unlike modularity, MTOM allows traits to retain strong evolutionary covariation while still reducing impacts on functionality. These results suggest that MTOM, and its influence on the evolution of correlated traits, is likely much more widespread than is currently understood. © 2017 The Author(s). Evolution © 2017 The Society for the Study of Evolution.

Dynamic evolutionary change in post-Paleozoic echinoids and the importance of scale when interpreting changes in rates of evolution.

PubMed

Hopkins, Melanie J; Smith, Andrew B

2015-03-24

How ecological and morphological diversity accrues over geological time has been much debated by paleobiologists. Evidence from the fossil record suggests that many clades reach maximal diversity early in their evolutionary history, followed by a decline in evolutionary rates as ecological space fills or due to internal constraints. Here, we apply recently developed methods for estimating rates of morphological evolution during the post-Paleozoic history of a major invertebrate clade, the Echinoidea. Contrary to expectation, rates of evolution were lowest during the initial phase of diversification following the Permo-Triassic mass extinction and increased over time. Furthermore, although several subclades show high initial rates and net decreases in rates of evolution, consistent with "early bursts" of morphological diversification, at more inclusive taxonomic levels, these bursts appear as episodic peaks. Peak rates coincided with major shifts in ecological morphology, primarily associated with innovations in feeding strategies. Despite having similar numbers of species in today's oceans, regular echinoids have accrued far less morphological diversity than irregular echinoids due to lower intrinsic rates of morphological evolution and less morphological innovation, the latter indicative of constrained or bounded evolution. These results indicate that rates of evolution are extremely heterogenous through time and their interpretation depends on the temporal and taxonomic scale of analysis.

Objectification of Public Bus Stop's Pavement Surface Morphology

NASA Astrophysics Data System (ADS)

Decký, Martin; Kováč, Matúš; Mužík, Juraj; Mičechová, Lenka; Ďuriš, Lukáš

2018-06-01

The article deals with the road pavement surface morphology objectification in term of the surface unevenness degradation during the life cycle of bus stop pavements. The article presents the results of long-term rut depth measurements performed during 25 years on selected bus stops which were intended to determine correlation dependences of pavement rut depth on a number of design axles. The article also presents different methods for rut depth measurements including the straightedge test, Profilograph GE, TRIMBLE CX, and dynamic Road Scanner.

THE EVOLUTION OF CIRCUMPLANETARY DISKS AROUND PLANETS IN WIDE ORBITS: IMPLICATIONS FOR FORMATION THEORY, OBSERVATIONS, AND MOON SYSTEMS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shabram, Megan; Boley, Aaron C.

2013-04-10

Using radiation hydrodynamics simulations, we explore the evolution of circumplanetary disks around wide-orbit proto-gas giants. At large distances from the star ({approx}100 AU), gravitational instability followed by disk fragmentation can form low-mass substellar companions (massive gas giants and/or brown dwarfs) that are likely to host large disks. We examine the initial evolution of these subdisks and their role in regulating the growth of their substellar companions, as well as explore consequences of their interactions with circumstellar material. We find that subdisks that form in the context of GIs evolve quickly from a very massive state. Long-term accretion rates from themore » subdisk onto the proto-gas giant reach {approx}0.3 Jupiter masses kyr{sup -1}. We also find consistency with previous simulations, demonstrating that subdisks are truncated at {approx}1/3 of the companion's Hill radius and are thick, with (h/r) of {approx}> 0.2. The thickness of subdisks draws to question the use of thin-disk approximations for understanding the behavior of subdisks, and the morphology of subdisks has implications for the formation and extent of satellite systems. These subdisks create heating events in otherwise cold regions of the circumstellar disk and serve as planet formation beacons that can be detected by instruments such as ALMA.« less

Urban driven phenotypic changes: empirical observations and theoretical implications for eco-evolutionary feedback

PubMed Central

Marzluff, John

2017-01-01

Emerging evidence that cities drive micro-evolution raises the question of whether rapid urbanization of Earth might impact ecosystems by causing systemic changes in functional traits that regulate urban ecosystems' productivity and stability. Intraspecific trait variation—variation in organisms' morphological, physiological or behavioural characteristics stemming from genetic variability and phenotypic plasticity—has significant implications for ecological functions such as nutrient cycling and primary productivity. While it is well established that changes in ecological conditions can drive evolutionary change in species' traits that, in turn, can alter ecosystem function, an understanding of the reciprocal and simultaneous processes associated with such interactions is only beginning to emerge. In urban settings, the potential for rapid trait change may be exacerbated by multiple selection pressures operating simultaneously. This paper reviews evidence on mechanisms linking urban development patterns to rapid phenotypic changes, and differentiates phenotypic changes for which there is evidence of micro-evolution versus phenotypic changes which may represent plasticity. Studying how humans mediate phenotypic trait changes through urbanization could shed light on fundamental concepts in ecological and evolutionary theory. It can also contribute to our understanding of eco-evolutionary feedback and provide insights for maintaining ecosystem function over the long term. This article is part of the themed issue ‘Human influences on evolution, and the ecological and societal consequences’. PMID:27920374

Surface Engineering of Polycrystalline Silicon for Long-Term Mechanical Stress Endurance Enhancement in Flexible Low-Temperature Poly-Si Thin-Film Transistors.

PubMed

Chen, Bo-Wei; Chang, Ting-Chang; Chang, Kuan-Chang; Hung, Yu-Ju; Huang, Shin-Ping; Chen, Hua-Mao; Liao, Po-Yung; Lin, Yu-Ho; Huang, Hui-Chun; Chiang, Hsiao-Cheng; Yang, Chung-I; Zheng, Yu-Zhe; Chu, Ann-Kuo; Li, Hung-Wei; Tsai, Chih-Hung; Lu, Hsueh-Hsing; Wang, Terry Tai-Jui; Chang, Tsu-Chiang

2017-04-05

The surface morphology in polycrystalline silicon (poly-Si) film is an issue regardless of whether conventional excimer laser annealing (ELA) or the newer metal-induced lateral crystallization (MILC) process is used. This paper investigates the stress distribution while undergoing long-term mechanical stress and the influence of stress on electrical characteristics. Our simulated results show that the nonuniform stress in the gate insulator is more pronounced near the polysilicon/gate insulator edge and at the two sides of the polysilicon protrusion. This stress results in defects in the gate insulator and leads to a nonuniform degradation phenomenon, which affects both the performance and the reliability in thin-film transistors (TFTs). The degree of degradation is similar regardless of bending axis (channel-length axis, channel-width axis) or bending type (compression, tension), which means that the degradation is dominated by the protrusion effects. Furthermore, by utilizing long-term electrical bias stresses after undergoing long-tern bending stress, it is apparent that the carrier injection is severe in the subchannel region, which confirms that the influence of protrusions is crucial. To eliminate the influence of surface morphology in poly-Si, three kinds of laser energy density were used during crystallization to control the protrusion height. The device with the lowest protrusions demonstrates the smallest degradation after undergoing long-term bending.

Intrinsic vs. extrinsic controls on channel evolution in a sub-tropical river, Australia

NASA Astrophysics Data System (ADS)

Daley, James; Croke, Jacky; Thompson, Chris; Cohen, Tim; Macklin, Mark; Sharma, Ashneel

2016-04-01

Palaeohydrological research provides valuable insights to the understanding of short- and long-term fluvial dynamics in response to climate change and tectonic activity. In landscapes where tectonic activity is minimal fluvial archives record long-term changes in sediment and discharge dynamics related to either intrinsic or extrinsic controls. Isolating the relative controls of these factors is an important frontier in this area of research. Advances in geochronology, the acquisition of high resolution topographic data and geomorphological techniques provide an opportunity to assess the relative importance of intrinsic and extrinsic controls on terrace and floodplain formation. This study presents the results of detailed chrono-stratigraphic research in a partly confined river valley in subtropical southeast Queensland. River systems within this region are characterized by high hydrological variability and have a near-ubiquitous compound channel morphology (macrochannel) where Holocene deposits are inset within late Pleistocene terraces. These macrochannels can accommodate floods up to and beyond the predicted 100-year flood. Using single grain optically stimulated luminescence and radiocarbon analyses, combined with high resolution spatial datasets, we demonstrate the nature of fluvial response to major late Quaternary climate change. A large proportion of the valley floor is dominated by terrace alluvium deposited after the Last Glacial Maximum (LGM) (17 - 13 ka) and overlies basal older Pleistocene alluvium. Preliminary results suggest a phase of incision occurred at 10 ka with the formation of the large alluvial trench. The Holocene floodplain is dominated by processes of catastrophic vertical accretion and erosion (cut-and-fill) and oblique accretion at the macrochannel margins. The consistency in ages for the terraces and subsequent incision suggests a uniform network response. Alluvial sediments and channel configuration in this compound and complex landscape represent a discernable response to long-term climate change, high climate variability and extreme weather events.

A multiplex culture system for the long-term growth of fission yeast cells.

PubMed

Callens, Céline; Coelho, Nelson C; Miller, Aaron W; Sananes, Maria Rosa Domingo; Dunham, Maitreya J; Denoual, Matthieu; Coudreuse, Damien

2017-08-01

Maintenance of long-term cultures of yeast cells is central to a broad range of investigations, from metabolic studies to laboratory evolution assays. However, repeated dilutions of batch cultures lead to variations in medium composition, with implications for cell physiology. In Saccharomyces cerevisiae, powerful miniaturized chemostat setups, or ministat arrays, have been shown to allow for constant dilution of multiple independent cultures. Here we set out to adapt these arrays for continuous culture of a morphologically and physiologically distinct yeast, the fission yeast Schizosaccharomyces pombe, with the goal of maintaining constant population density over time. First, we demonstrated that the original ministats are incompatible with growing fission yeast for more than a few generations, prompting us to modify different aspects of the system design. Next, we identified critical parameters for sustaining unbiased vegetative growth in these conditions. This requires deletion of the gsf2 flocculin-encoding gene, along with addition of galactose to the medium and lowering of the culture temperature. Importantly, we improved the flexibility of the ministats by developing a piezo-pump module for the independent regulation of the dilution rate of each culture. This made it possible to easily grow strains that have different generation times in the same assay. Our system therefore allows for maintaining multiple fission yeast cultures in exponential growth, adapting the dilution of each culture over time to keep constant population density for hundreds of generations. These multiplex culture systems open the door to a new range of long-term experiments using this model organism. © 2017 The Authors. Yeast published by John Wiley & Sons, Ltd. © 2017 The Authors. Yeast published by John Wiley & Sons, Ltd.

Population Dynamics of Genetic Regulatory Networks

NASA Astrophysics Data System (ADS)

Braun, Erez

2005-03-01

Unlike common objects in physics, a biological cell processes information. The cell interprets its genome and transforms the genomic information content, through the action of genetic regulatory networks, into proteins which in turn dictate its metabolism, functionality and morphology. Understanding the dynamics of a population of biological cells presents a unique challenge. It requires to link the intracellular dynamics of gene regulation, through the mechanism of cell division, to the level of the population. We present experiments studying adaptive dynamics of populations of genetically homogeneous microorganisms (yeast), grown for long durations under steady conditions. We focus on population dynamics that do not involve random genetic mutations. Our experiments follow the long-term dynamics of the population distributions and allow to quantify the correlations among generations. We focus on three interconnected issues: adaptation of genetically homogeneous populations following environmental changes, selection processes on the population and population variability and expression distributions. We show that while the population exhibits specific short-term responses to environmental inputs, it eventually adapts to a robust steady-state, largely independent of external conditions. Cycles of medium-switch show that the adapted state is imprinted in the population and that this memory is maintained for many generations. To further study population adaptation, we utilize the process of gene recruitment whereby a gene naturally regulated by a specific promoter is placed under a different regulatory system. This naturally occurring process has been recognized as a major driving force in evolution. We have recruited an essential gene to a foreign regulatory network and followed the population long-term dynamics. Rewiring of the regulatory network allows us to expose their complex dynamics and phase space structure.

Modeling the Long-term Planform Evolution of Meandering Rivers in Confined Alluvial Valleys: Etsch-Adige River, NE Italy.

NASA Astrophysics Data System (ADS)

Zen, S.; Bogoni, M.; Zolezzi, G.; Lanzoni, S.; Scorpio, V.

2016-12-01

We combine the use of a morphodynamic model for river meander planform evolution with a geological dataset to investigate the influence of external confinements on the long-term evolution of a meandering river flowing in an Alpine valley. The analysis focuses on a 100 km reach of the Adige River, NE Italy, which had several sinuous/meandering sections before being extensively channelized in the 1800s. Geological surveys and historical maps revealed that many sections of the study reach impinge on the borders of the valley during its evolution. Moreover, a marked spatial heterogeneity in floodplain vertical accretion rates likely reflects preferential positions of the river channel in the floodplain. Valley confinements are represented by bedrock outcrops and by alluvial fans created by lateral tributaries, and were extracted from the geological and historical maps to build the computational domain for the meander morphodynamic model. The model predicts the long-term planform evolution of a meandering river based on a linear solution of the 2D De St Venant-Exner differential system and can manage changes in floodplain erodibility. Model applications allow to isolate the effects of valley bedrock and of alluvial fans in constraining the lateral channel migration. Modeled river channel persistence maps are compared with the available geological information. The present work allows further insights into the role of external confinements to river meander belts, which have been conducted so far mostly assuming the channel to evolve in unconfined floodplains. Future research shall incorporate model components for floodplain vertical accretion rates and for the advancement of alluvial fans occurring at the same time scale considered for meander evolution.

Stable interstitial layer to alleviate fatigue fracture of high nickel cathode for lithium-ion batteries

NASA Astrophysics Data System (ADS)

Yang, Chengkai; Shao, Ruiwen; Mi, Yingying; Shen, Lanyao; Zhao, Binglu; wang, Qian; Wu, Kai; Lui, Wen; Gao, Peng; Zhou, Henghui

2018-02-01

High nickel cathodes can deliver higher capacity with lower cost than conventional LiCoO2, however, the irreversible structural and morphology degradation with long-term cycling hinder their further application. In this paper, LiNi0.815Co0.15Al0.035O2 agglomerates are treated by LiNi0.333Co0.333Mn0.333O2 coating to get a stable interstitial layer without capacity loss. The interstitial layer is about 10 nm in thickness and has a layered (R-3m) structure, which can improve the chemical and mechanical stability of cathode materials with capacity retention of 88.5% after 200 cycles. The structural analysis and in-situ compression test proves that the morphology degradation is a fatigue process within long-term electrochemical reaction, and the coated sample has an excellent elastic recovery capacity thus leading to long cycle life.

Long term evolution of planetary systems with a terrestrial planet and a giant planet.

NASA Astrophysics Data System (ADS)

Georgakarakos, Nikolaos; Dobbs-Dixon, Ian; Way, Michael J.

2017-06-01

We study the long term orbital evolution of a terrestrial planet under the gravitational perturbations of a giant planet. In particular, we are interested in situations where the two planets are in the same plane and are relatively close. We examine both possible configurations: the giant planet orbit being either outside or inside the orbit of the smaller planet. The perturbing potential is expanded to high orders and an analytical solution of the terrestrial planetary orbit is derived. The analytical estimates are then compared against results from the numerical integration of the full equations of motion and we find that the analytical solution works reasonably well. An interesting finding is that the new analytical estimates improve greatly the predictions for the timescales of the orbital evolution of the terrestrial planet compared to an octupole order expansion.

Corolla morphology influences diversification rates in bifid toadflaxes (Linaria sect. Versicolores)

PubMed Central

Fernández-Mazuecos, Mario; Blanco-Pastor, José Luis; Gómez, José M.; Vargas, Pablo

2013-01-01

Background and Aims The role of flower specialization in plant speciation and evolution remains controversial. In this study the evolution of flower traits restricting access to pollinators was analysed in the bifid toadflaxes (Linaria sect. Versicolores), a monophyletic group of ∼30 species and subspecies with highly specialized corollas. Methods A time-calibrated phylogeny based on both nuclear and plastid DNA sequences was obtained using a coalescent-based method, and flower morphology was characterized by means of morphometric analyses. Directional trends in flower shape evolution and trait-dependent diversification rates were jointly analysed using recently developed methods, and morphological shifts were reconstructed along the phylogeny. Pollinator surveys were conducted for a representative sample of species. Key Results A restrictive character state (narrow corolla tube) was reconstructed in the most recent common ancestor of Linaria sect. Versicolores. After its early loss in the most species-rich clade, this character state has been convergently reacquired in multiple lineages of this clade in recent times, yet it seems to have exerted a negative influence on diversification rates. Comparative analyses and pollinator surveys suggest that the narrow- and broad-tubed flowers are evolutionary optima representing divergent strategies of pollen placement on nectar-feeding insects. Conclusions The results confirm that different forms of floral specialization can lead to dissimilar evolutionary success in terms of diversification. It is additionally suggested that opposing individual-level and species-level selection pressures may have driven the evolution of pollinator-restrictive traits in bifid toadflaxes. PMID:24142920

Rapid evolution mitigates the ecological consequences of an invasive species (Bythotrephes longimanus) in lakes in Wisconsin.

PubMed

Gillis, Michael K; Walsh, Matthew R

2017-07-12

Invasive species have extensive negative consequences for biodiversity and ecosystem health. Novel species also drive contemporary evolution in many native populations, which could mitigate or amplify their impacts on ecosystems. The predatory zooplankton Bythotrephes longimanus invaded lakes in Wisconsin, USA, in 2009. This invasion caused precipitous declines in zooplankton prey ( Daphnia pulicaria ), with cascading impacts on ecosystem services (water clarity). Here, we tested the link between Bythotrephes invasion, evolution in Daphnia and post-invasion ecological dynamics using 15 years of long-term data in conjunction with comparative experiments. Invasion by Bythotrephes is associated with rapid increases in the body size of Daphnia Laboratory experiments revealed that such shifts have a genetic component; third-generation laboratory-reared Daphnia from 'invaded' lakes are significantly larger and exhibit greater reproductive effort than individuals from 'uninvaded' lakes. This trajectory of evolution should accelerate Daphnia population growth and enhance population persistence. We tested this prediction by comparing analyses of long-term data with laboratory-based simulations, and show that rapid evolution in Daphnia is associated with increased population growth in invaded lakes. © 2017 The Authors.

Outbursts and Gradualism: Megaflood erosion consistent with long-term landscape evolution

NASA Astrophysics Data System (ADS)

Garcia-Castellanos, Daniel; O'Connor, Jim

2017-04-01

Existing models for the development of topography and relief over geological timescales are fundamentally based on semi-empirical laws of the erosion and sediment transport performed by rivers. The prediction power of these laws is hindered by limitations in measuring river incision and by the scant knowledge of the past hydrological conditions, specifically average water flow and its variability. Consequently, models adopt 'gradualistic' (time-averaged) assumptions and the erodability values derived from modelling long-term erosion rates in rivers remain ambiguously tied not only to the lithology and nature of the bedrock but also to uncertainties in the quantification of past climate. This prevents the use of those erodabilities to predict the landscape evolution in different scenarios. Here, we apply the fundamentals of river erosion models to outburst floods triggered by overtopping lakes, for which the hydrograph is intrinsically known from the geomorphological record or from direct measures. We obtain the outlet erodability from the peak water discharge and lake area observed in 86 floods that span over 16 orders of magnitude in water volume. The obtained erodability-lithology correlation is consistent with that seen in 22 previous long-term river incision quantifications, showing that outburst floods can be used to estimate erodability values that remain valid for a wide range of hydrological regimes and for erosion timescales spanning from hours-long outburst floods to million-year-scale landscape evolution. The results constrain the conditions leading to the runaway erosion responsible for outburst floods triggered by overtopping lakes. They also call for the explicit incorporation of climate episodicity to the landscape evolution models. [Funded by CGL2014-59516].

Food load manipulation ability shapes flight morphology in females of central-place foraging Hymenoptera

PubMed Central

2013-01-01

Background Ecological constraints related to foraging are expected to affect the evolution of morphological traits relevant to food capture, manipulation and transport. Females of central-place foraging Hymenoptera vary in their food load manipulation ability. Bees and social wasps modulate the amount of food taken per foraging trip (in terms of e.g. number of pollen grains or parts of prey), while solitary wasps carry exclusively entire prey items. We hypothesized that the foraging constraints acting on females of the latter species, imposed by the upper limit to the load size they are able to transport in flight, should promote the evolution of a greater load-lifting capacity and manoeuvrability, specifically in terms of greater flight muscle to body mass ratio and lower wing loading. Results Our comparative study of 28 species confirms that, accounting for shared ancestry, female flight muscle ratio was significantly higher and wing loading lower in species taking entire prey compared to those that are able to modulate load size. Body mass had no effect on flight muscle ratio, though it strongly and negatively co-varied with wing loading. Across species, flight muscle ratio and wing loading were negatively correlated, suggesting coevolution of these traits. Conclusions Natural selection has led to the coevolution of resource load manipulation ability and morphological traits affecting flying ability with additional loads in females of central-place foraging Hymenoptera. Release from load-carrying constraints related to foraging, which took place with the evolution of food load manipulation ability, has selected against the maintenance of a powerful flight apparatus. This could be the case since investment in flight muscles may have to be traded against other life-history traits, such as reproductive investment. PMID:23805850

Origin and dynamics of depositionary subduction margins

USGS Publications Warehouse

Vannucchi, Paola; Morgan, Jason P.; Silver, Eli; Kluesner, Jared W.

2016-01-01

Here we propose a new framework for forearc evolution that focuses on the potential feedbacks between subduction tectonics, sedimentation, and geomorphology that take place during an extreme event of subduction erosion. These feedbacks can lead to the creation of a “depositionary forearc,” a forearc structure that extends the traditional division of forearcs into accretionary or erosive subduction margins by demonstrating a mode of rapid basin accretion during an erosive event at a subduction margin. A depositionary mode of forearc evolution occurs when terrigenous sediments are deposited directly on the forearc while it is being removed from below by subduction erosion. In the most extreme case, an entire forearc can be removed by a single subduction erosion event followed by depositionary replacement without involving transfer of sediments from the incoming plate. We need to further recognize that subduction forearcs are often shaped by interactions between slow, long-term processes, and sudden extreme events reflecting the sudden influences of large-scale morphological variations in the incoming plate. Both types of processes contribute to the large-scale architecture of the forearc, with extreme events associated with a replacive depositionary mode that rapidly creates sections of a typical forearc margin. The persistent upward diversion of the megathrust is likely to affect its geometry, frictional nature, and hydrogeology. Therefore, the stresses along the fault and individual earthquake rupture characteristics are also expected to be more variable in these erosive systems than in systems with long-lived megathrust surfaces.

Evolution of Akaganeite in Rust Layers Formed on Steel Submitted to Wet/Dry Cyclic Tests

PubMed Central

Ye, Wei; Song, Xiaoping; Ma, Yuantai; Li, Ying

2017-01-01

The evolution of akaganeite in rust layers strongly impacts the atmospheric corrosion behavior of steel during long-term exposure; however, the factors affecting the evolution of akaganeite and its mechanism of formation are vague. In this work, wet-dry cyclic corrosion tests were conducted to simulate long-term exposure. Quantitative X-ray diffraction analysis was employed to analyze variations in the relative amounts of akaganeite; scanning electron microscopy and electron probe microanalysis were used to study the migration of relevant elements in the rust layer, which could help elucidate the mechanism of akaganeite evolution. The results indicate that the fraction of akaganeite tends to decrease as the corrosion process proceeded, which is a result of the decrease in the amount of soluble chloride available and the ability of the thick rust layer to block the migration of relevant ions. This work also explores the location of akaganeite formation within the rust layer. PMID:29099061

Towards an Ecological Understanding of Dinoflagellate Cyst Functions

PubMed Central

Bravo, Isabel; Figueroa, Rosa Isabel

2014-01-01

The life cycle of many dinoflagellates includes at least one nonflagellated benthic stage (cyst). In the literature, the different types of dinoflagellate cysts are mainly defined based on morphological (number and type of layers in the cell wall) and functional (long- or short-term endurance) differences. These characteristics were initially thought to clearly distinguish pellicle (thin-walled) cysts from resting (double-walled) dinoflagellate cysts. The former were considered short-term (temporal) and the latter long-term (resting) cysts. However, during the last two decades further knowledge has highlighted the great intricacy of dinoflagellate life histories, the ecological significance of cyst stages, and the need to clarify the functional and morphological complexities of the different cyst types. Here we review and, when necessary, redefine the concepts of resting and pellicle cysts, examining both their structural and their functional characteristics in the context of the life cycle strategies of several dinoflagellate species. PMID:27694774

Osseointegration of Plateau Root Form Implants: Unique Healing Pathway Leading to Haversian-Like Long-Term Morphology.

PubMed

Coelho, Paulo G; Suzuki, Marcelo; Marin, Charles; Granato, Rodrigo; Gil, Luis F; Tovar, Nick; Jimbo, Ryo; Neiva, Rodrigo; Bonfante, Estevam A

2015-01-01

Endosteal dental implants have been utilized as anchors for dental and orthopedic rehabilitations for decades with one of the highest treatment success rates in medicine. Such success is due to the phenomenon of osseointegration where after the implant surgical placement, bone healing results into an intimate contact between bone and implant surface. While osseointegration is an established phenomenon, the route which osseointegration occurs around endosteal implants is related to various implant design factors including surgical instrumentation and implant macro, micro, and nanometer scale geometry. In an implant system where void spaces (healing chambers) are present between the implant and bone immediately after placement, its inherent bone healing pathway results in unique opportunities to accelerate the osseointegration phenomenon at the short-term and its maintenance on the long-term through a haversian-like bone morphology and mechanical properties.

The Place of Assisted Living in Long-Term Care and Related Service Systems

ERIC Educational Resources Information Center

Stone, Robyn I.; Reinhard, Susan C.

2007-01-01

Purpose: The purpose of this article is to describe how assisted living (AL) fits with other long-term-care services. Design and Methods: We analyzed the evolution of AL, including the populations served, the services offered, and federal and state policies that create various incentives or disincentives for using AL to replace other forms of care…

Dynamics of clade diversification on the morphological hypercube

PubMed Central

Gavrilets, S.

1999-01-01

Understanding the relationship between taxonomic and morphological changes is important in identifying the reasons for accelerated morphological diversification early in the history of animal phyla. Here, a simple general model describing the joint dynamics of taxonomic diversity and morphological disparity is presented and applied to the data on the diversification of blastozoans. I show that the observed patterns of deceleration in clade diversification can be explicable in terms of the geometric structure of the morphospace and the effects of extinction and speciation on morphological disparity without invoking major declines in the size of morphological transitions or taxonomic turnover rates. The model allows testing of hypotheses about patterns of diversification and estimation of rates of morphological evolution. In the case of blastozoans, I find no evidence that major changes in evolutionary rates and mechanisms are responsible for the deceleration of morphological diversification seen during the period of this clade's expansion. At the same time, there is evidence for a moderate decline in overall rates of morphological diversification concordant with a major change (from positive to negative values) in the clade's growth rate.

Evolution with Reinforcement Learning in Negotiation

PubMed Central

Zou, Yi; Zhan, Wenjie; Shao, Yuan

2014-01-01

Adaptive behavior depends less on the details of the negotiation process and makes more robust predictions in the long term as compared to in the short term. However, the extant literature on population dynamics for behavior adjustment has only examined the current situation. To offset this limitation, we propose a synergy of evolutionary algorithm and reinforcement learning to investigate long-term collective performance and strategy evolution. The model adopts reinforcement learning with a tradeoff between historical and current information to make decisions when the strategies of agents evolve through repeated interactions. The results demonstrate that the strategies in populations converge to stable states, and the agents gradually form steady negotiation habits. Agents that adopt reinforcement learning perform better in payoff, fairness, and stableness than their counterparts using classic evolutionary algorithm. PMID:25048108

Evolution with reinforcement learning in negotiation.

PubMed

Zou, Yi; Zhan, Wenjie; Shao, Yuan

2014-01-01

Adaptive behavior depends less on the details of the negotiation process and makes more robust predictions in the long term as compared to in the short term. However, the extant literature on population dynamics for behavior adjustment has only examined the current situation. To offset this limitation, we propose a synergy of evolutionary algorithm and reinforcement learning to investigate long-term collective performance and strategy evolution. The model adopts reinforcement learning with a tradeoff between historical and current information to make decisions when the strategies of agents evolve through repeated interactions. The results demonstrate that the strategies in populations converge to stable states, and the agents gradually form steady negotiation habits. Agents that adopt reinforcement learning perform better in payoff, fairness, and stableness than their counterparts using classic evolutionary algorithm.

Are CORNER and BROTHER Morphologically Complex? Not in the Long Term

ERIC Educational Resources Information Center

Rueckl, Jay G.; Aicher, Karen A.

2008-01-01

Previous studies haves shown that under masked priming conditions, CORNER primes CORN as strongly as TEACHER primes TEACH and more strongly than BROTHEL primes BROTH. This result has been taken as evidence of a purely structural level of representation at which words are decomposed into morphological constituents in a manner that is independent of…

Dynamic evolutionary change in post-Paleozoic echinoids and the importance of scale when interpreting changes in rates of evolution

PubMed Central

Hopkins, Melanie J.; Smith, Andrew B.

2015-01-01

How ecological and morphological diversity accrues over geological time has been much debated by paleobiologists. Evidence from the fossil record suggests that many clades reach maximal diversity early in their evolutionary history, followed by a decline in evolutionary rates as ecological space fills or due to internal constraints. Here, we apply recently developed methods for estimating rates of morphological evolution during the post-Paleozoic history of a major invertebrate clade, the Echinoidea. Contrary to expectation, rates of evolution were lowest during the initial phase of diversification following the Permo-Triassic mass extinction and increased over time. Furthermore, although several subclades show high initial rates and net decreases in rates of evolution, consistent with “early bursts” of morphological diversification, at more inclusive taxonomic levels, these bursts appear as episodic peaks. Peak rates coincided with major shifts in ecological morphology, primarily associated with innovations in feeding strategies. Despite having similar numbers of species in today’s oceans, regular echinoids have accrued far less morphological diversity than irregular echinoids due to lower intrinsic rates of morphological evolution and less morphological innovation, the latter indicative of constrained or bounded evolution. These results indicate that rates of evolution are extremely heterogenous through time and their interpretation depends on the temporal and taxonomic scale of analysis. PMID:25713369

A plastid phylogeny and character evolution of the Old World fern genus Pyrrosia (Polypodiaceae) with the description of a new genus: Hovenkampia (Polypodiaceae).

PubMed

Zhou, Xin-Mao; Zhang, Liang; Chen, Cheng-Wei; Li, Chun-Xiang; Huang, Yao-Moan; Chen, De-Kui; Lu, Ngan Thi; Cicuzza, Daniele; Knapp, Ralf; Luong, Thien Tam; Nitta, Joel H; Gao, Xin-Fen; Zhang, Li-Bing

2017-09-01

The Old World fern genus Pyrrosia (Polypodiaceae) offers a rare system in ferns to study morphological evolution because almost all species of this genus are well studied for their morphology, anatomy, and spore features, and various hypotheses have been proposed in terms of the phylogeny and evolution in this genus. However, the molecular phylogeny of the genus lags behind. The monophyly of the genus has been uncertain and a modern phylogenetic study of the genus based on molecular data has been lacking. In the present study, DNA sequences of five plastid markers of 220 accessions of Polypodiaceae representing two species of Drymoglossum, 14 species of Platycerium, 50 species of Pyrrosia, and the only species of Saxiglossum (subfamily Platycerioideae), and 12 species of other Polypodiaceae representing the remaining four subfamilies are used to infer a phylogeny of the genus. Major results and conclusions of this study include: (1) Pyrrosia as currently circumscribed is paraphyletic in relation to Platycerium and can be divided into two genera: Pyrrosia s.s. and Hovenkampia (gen. nov.), with Hovenkampia and Platycerium forming a strongly supported clade sister to Pyrrosia s.s.; (2) Subfamily Platycerioideae should contain three genera only, Hovenkampia, Platycerium, and Pyrrosia s.s.; (3) Based on the molecular phylogeny, macromorphology, anatomical features, and spore morphology, four major clades in the genus are identified and three of the four are further resolved into four, four, and six subclades, respectively; (4) Three species, P. angustissima, P. foveolata, and P. mannii, not assigned to any groups by Hovenkamp (1986) because of their unusual morphology, each form monospecific clades; (5) Drymoglossum is not monophyletic and those species previously assigned to this genus are resolved in two different subclades; (6) Saxiglossum is resolved as the first lineage in the Niphopsis clade; and (7) The evolution of ten major morphological characters in the subfamily is inferred based on the phylogeny and various morphological synapomorphies for various clades and subclades are identified. Copyright © 2017 Elsevier Inc. All rights reserved.

Phylogeny, character evolution, and biogeography of Cuscuta (dodders; Convolvulaceae) inferred from coding plastid and nuclear sequences.

PubMed

García, Miguel A; Costea, Mihai; Kuzmina, Maria; Stefanović, Saša

2014-04-01

The parasitic genus Cuscuta, containing some 200 species circumscribed traditionally in three subgenera, is nearly cosmopolitan, occurring in a wide range of habitats and hosts. Previous molecular studies, on subgenera Grammica and Cuscuta, delimited major clades within these groups. However, the sequences used were unalignable among subgenera, preventing the phylogenetic comparison across the genus. We conducted a broad phylogenetic study using rbcL and nrLSU sequences covering the morphological, physiological, and geographical diversity of Cuscuta. We used parsimony methods to reconstruct ancestral states for taxonomically important characters. Biogeographical inferences were obtained using statistical and Bayesian approaches. Four well-supported major clades are resolved. Two of them correspond to subgenera Monogynella and Grammica. Subgenus Cuscuta is paraphyletic, with section Pachystigma sister to subgenus Grammica. Previously described cases of strongly supported discordance between plastid and nuclear phylogenies, interpreted as reticulation events, are confirmed here and three new cases are detected. Dehiscent fruits and globose stigmas are inferred as ancestral character states, whereas the ancestral style number is ambiguous. Biogeographical reconstructions suggest an Old World origin for the genus and subsequent spread to the Americas as a consequence of one long-distance dispersal. Hybridization may play an important yet underestimated role in the evolution of Cuscuta. Our results disagree with scenarios of evolution (polarity) previously proposed for several taxonomically important morphological characters, and with their usage and significance. While several cases of long-distance dispersal are inferred, vicariance or dispersal to adjacent areas emerges as the dominant biogeographical pattern.

Feedbacks between subglacial dynamics and long-term glacial landscape evolution (Invited)

NASA Astrophysics Data System (ADS)

Brædstrup, C. F.; Egholm, D. L.; Ugelvig, S. V.; Christensen, A. D.; Andersen, J. L.

2011-12-01

Several well-known glacial landforms (such as U-shaped troughs and cirques) are associated with characteristic length scales, indicating that the viscosity of the ice and the stress gradients associated with ice flow exert first-order controls on their formation. The evolution of these glacial landforms has so far mostly been explored using phenomenological models that simply link the subglacial erosion rate to sliding or ice discharge. In order to improve our understanding of the causal links between the glacial landforms and the physics of the subglacial environment, we have performed computational experiments with a higher-order ice sheet model (Egholm et al., 2009) capable of simulating the long-term evolution of subglacial dynamics at a high spatial resolution. The orientation and magnitude of subglacial stress components depend not only on ice thickness and ice surface gradients, but also on the details of the bed topography and the regional variations in ice flow velocity. As glaciers erode their beds and modify the morphology of glaciated valleys, the subglacial dynamics therefore change with important implications for the sliding patterns and the continued erosion rates. We focus this presentation on feedbacks between the evolving bed topography and the subglacial erosion patterns. We have performed our experiments with different sliding and erosion laws, including highly non-linear rules representing coulomb-type slip at the bed (Schoof, 2010) and a quarrying model associated to the level of cavitation (Iverson, 2012). The highly non-linear computational experiments are made possible by new and very efficient GPU-accelerated multigrid algorithms. The computational experiments show that higher-order stress effects associated with local changes to the bed gradient provide important stabilizing effects for example in overdeepenings and near topographic steps. The experiments also show how a narrow and meandering pre-glacial valley represents a much more stable environment for a glacier than a glacially eroded valley where slip instabilities can readily propagate upstream. References: Egholm, D. L. et al. Modeling the flow of glaciers in steep terrains: The integrated second-order shallow ice approximation (iSOSIA). Journal of Geophysical Research, 116, F02012 (2011). Iverson, N. R. A theory of glacial quarrying for landscape evolution models. Geology, v. 40, no. 8, 679-682 (2012). Schoof, C. The effect of cavitation on glacier sliding. Proc. R. Soc. A , 461, 609-627 (2005).

Feedbacks between subglacial dynamics and long-term glacial landscape evolution (Invited)

NASA Astrophysics Data System (ADS)

Brædstrup, C. F.; Egholm, D. L.; Ugelvig, S. V.; Christensen, A. D.; Andersen, J. L.

2013-12-01

Several well-known glacial landforms (such as U-shaped troughs and cirques) are associated with characteristic length scales, indicating that the viscosity of the ice and the stress gradients associated with ice flow exert first-order controls on their formation. The evolution of these glacial landforms has so far mostly been explored using phenomenological models that simply link the subglacial erosion rate to sliding or ice discharge. In order to improve our understanding of the causal links between the glacial landforms and the physics of the subglacial environment, we have performed computational experiments with a higher-order ice sheet model (Egholm et al., 2009) capable of simulating the long-term evolution of subglacial dynamics at a high spatial resolution. The orientation and magnitude of subglacial stress components depend not only on ice thickness and ice surface gradients, but also on the details of the bed topography and the regional variations in ice flow velocity. As glaciers erode their beds and modify the morphology of glaciated valleys, the subglacial dynamics therefore change with important implications for the sliding patterns and the continued erosion rates. We focus this presentation on feedbacks between the evolving bed topography and the subglacial erosion patterns. We have performed our experiments with different sliding and erosion laws, including highly non-linear rules representing coulomb-type slip at the bed (Schoof, 2010) and a quarrying model associated to the level of cavitation (Iverson, 2012). The highly non-linear computational experiments are made possible by new and very efficient GPU-accelerated multigrid algorithms. The computational experiments show that higher-order stress effects associated with local changes to the bed gradient provide important stabilizing effects for example in overdeepenings and near topographic steps. The experiments also show how a narrow and meandering pre-glacial valley represents a much more stable environment for a glacier than a glacially eroded valley where slip instabilities can readily propagate upstream. References: Egholm, D. L. et al. Modeling the flow of glaciers in steep terrains: The integrated second-order shallow ice approximation (iSOSIA). Journal of Geophysical Research, 116, F02012 (2011). Iverson, N. R. A theory of glacial quarrying for landscape evolution models. Geology, v. 40, no. 8, 679-682 (2012). Schoof, C. The effect of cavitation on glacier sliding. Proc. R. Soc. A , 461, 609-627 (2005).

The Funding of Long-Term Care in Canada: What Do We Know, What Should We Know?

PubMed

Grignon, Michel; Spencer, Byron G

2018-06-01

ABSTRACTLong-term care is a growing component of health care spending but how much is spent or who bears the cost is uncertain, and the measures vary depending on the source used. We drew on regularly published series and ad hoc publications to compile preferred estimates of the share of long-term care spending in total health care spending, the private share of long-term care spending, and the share of residential care within long-term care. For each series, we compared estimates obtainable from published sources (CIHI [Canadian Institute for Health Information] and OECD [Organization for Economic Cooperation and Development]) with our preferred estimates. We conclude that using published series without adjustment would lead to spurious conclusions on the level and evolution of spending on long-term care in Canada as well as on the distribution of costs between private and public funders and between residential and home care.

Capacity Fading Mechanism of the Commercial 18650 LiFePO4-Based Lithium-Ion Batteries: An in Situ Time-Resolved High-Energy Synchrotron XRD Study.

PubMed

Liu, Qi; Liu, Yadong; Yang, Fan; He, Hao; Xiao, Xianghui; Ren, Yang; Lu, Wenquan; Stach, Eric; Xie, Jian

2018-02-07

In situ high-energy synchrotron XRD studies were carried out on commercial 18650 LiFePO 4 cells at different cycles to track and investigate the dynamic, chemical, and structural changes in the course of long-term cycling to elucidate the capacity fading mechanism. The results indicate that the crystalline structural deterioration of the LiFePO 4 cathode and the graphite anode is unlikely to happen before capacity fades below 80% of the initial capacity. Rather, the loss of the active lithium source is the primary cause for the capacity fade, which leads to the appearance of inactive FePO 4 that is proportional to the absence of the lithium source. Our in situ HESXRD studies further show that the lithium-ion insertion and deinsertion behavior of LiFePO 4 continuously changed with cycling. For a fresh cell, the LiFePO 4 experienced a dual-phase solid-solution behavior, whereas with increasing cycle numbers, the dynamic change, which is characteristic of the continuous decay of solid solution behavior, is obvious. The unpredicted dynamic change may result from the morphology evolution of LiFePO 4 particles and the loss of the lithium source, which may be the cause of the decreased rate capability of LiFePO 4 cells after long-term cycling.

Jovian Vortices and Barges: HST observations 1994-1998

NASA Astrophysics Data System (ADS)

Morales, R.; Sanchez-Lavega, A.; Lecacheux, J.; Colas, F.; Miyazaki, I.

2000-10-01

We have used the HST-WFPC2 archived images of Jupiter in the period 1994-1998 to study the zonal and meridional distributions, long-term motions, lifetimes, interactions and other properties of the vortices larger than 2 degrees. The latitude range covered spans from +75 to -75 degrees. High-resolution images obtained with the 890nm, 410nm and 953nm wavelength filters allowed us to make a morphological classification based on their appearance in each filter. The vortices are anticyclones, and their long-term motions have been completed with ground-based images and are compared to the mean Jovian zonal wind profile. Significant differences are found between the vortex velocities and the mean zonal winds. Some vortices exhibited important drift changes in short period times. We analyze a possible correlation between their size and zonal wind velocity. On the other hand, the "barges" lie in the cyclone domains of the wind-profile and have been identified in several latitudes. Their latitudinal size is similar in all of them (typically 1.6 degrees) but their longitudinal size ranges from 1 to 32 degrees. We discuss the temporal evolution of some of these cyclonic regions. The Spanish team was supported by Gobierno Vasco PI 034/97. The French team was supported by the "Programme National de Planetologie." RM acknowledges a fellowship from Universidad Pais Vasco.

Dynamical Stability and Long-term Evolution of Rotating Stellar Systems

NASA Astrophysics Data System (ADS)

Varri, Anna L.; Vesperini, E.; McMillan, S. L. W.; Bertin, G.

2011-05-01

We present the first results of an extensive survey of N-body simulations designed to investigate the dynamical stability and the long-term evolution of two new families of self-consistent stellar dynamical models, characterized by the presence of internal rotation. The first family extends the well-known King models to the case of axisymmetric systems flattened by solid-body rotation while the second family is characterized by differential rotation. The equilibrium configurations thus obtained can be described in terms of two dimensionless parameters, which measure the concentration and the amount of rotation, respectively. Slowly rotating configurations are found to be dynamically stable and we followed their long-term evolution, in order to evaluate the interplay between collisional relaxation and angular momentum transport. We also studied the stability of rapidly rotating models, which are characterized by the presence of a toroidal core embedded in an otherwise quasi-spherical configuration. In both cases, a description in terms of the radial and global properties, such as the ratio between the ordered kinetic energy and the gravitational energy of the system, is provided. Because the role of angular momentum in the process of cluster formation is only partly understood, we also undertook a preliminary investigation of the violent relaxation of simple systems initially characterized by approximate solid-body rotation. The properties of the final equilibrium configurations thus obtained are compared with those of the above-described family of differentially rotating models.

Quantitative Relationships Between Net Volume Change and Fabric Properties During Soil Evolution

NASA Technical Reports Server (NTRS)

Chadwick, O. A.; Nettleton, W. D.

1993-01-01

The state of soil evolution can be charted by net long-term volume and elemental mass changes for individual horizons compared with parent material. Volume collapse or dilation depends on relative elemental mass fluxes associated with losses form or additions to soil horizons.

Early Precambrian Carbonate and Evapolite Sediments: Constraints on Environmental and Biological Evolution

NASA Technical Reports Server (NTRS)

Grotzinger, John P.

2002-01-01

The work accomplished under NASA Grant NAG5-6722 was very successful. Our lab was able to document the occurrence and distribution of evaporite-to-carbonate transitions in several basins during Precambrian time, to help constrain the long-term chemical evolution of seawater.

Gully evolution and geomorphic adjustments of badlands to recent afforestation

NASA Astrophysics Data System (ADS)

Ballesteros-Cánovas, Juan Antonio; Stoffel, Markus; Francisco Martín-Duque, Jose; Corona, Christophe; Lucia, Ana; María Bodoque, Jose

2016-04-01

Badlands and gullied areas are among the geomorphic environments with the highest erosion rates worldwide, however records on their evolution are very scarce and often limited to presumed initial conditions and the known present state. In this communication, we present a unique and very dense and annual record and outstanding example of erosion processes in a Mediterranean environment in Central Spain, where badland and gullying processes on sandy slopes of a set of mesas have been presumably triggered by quarrying activities since Medieval times. The gully channel evolution here analyzed provides an exceptional example of a larger setting of geomorphic. Besides the analysis of geomorphic adjustments to historical land-use changes induced by historical quarrying and gullying dynamics, we also quantified the impact of current geomorphic adjustments to 20th century afforestation by combining multiproxy such as aerial photography, historical archives, and large dataset of exposed roots to date, quantify, and reconstruct the morphology of a rapidly evolving channel in a gullied catchment. In this analysis, more than 150 exposed roots were analyzed to quantify and report channel incision; widening and gully retreatment rates during the last decades, as well as to quantify sheet erosion on different soil units. Our results suggest that, rather than stabilizing gully evolution, the afforestation carried out during 1960s has played an important role in water-sediment balance and connectivity and would have triggered the initiation of channel incision processes in the 1980s. Therefore, we observe that the channel incision match with a significant increase of the vegetation cover, which leads a significant decrease in sheet erosion rates. Based on our long-term annual gully reconstruction, we observed that sediment delivery does not correlate with the estimated intensity of precipitation (Fourier index). Instead, we observe abrupt morphological changes in the gully are presumably related with changes in connectivity after a specific intense event. Consequently, we hypothesize that the gullying process-vegetation interactions are subsidiary of the geomorphic adjustments and connectivity states of the system; and speculate that this understanding is essential for suitable restoration and management plans.

Age, origin and evolution of Antarctic debris-covered glaciers: Implications for landscape evolution and long-term climate change

NASA Astrophysics Data System (ADS)

Mackay, Sean Leland

Antarctic debris-covered glaciers are potential archives of long-term climate change. However, the geomorphic response of these systems to climate forcing is not well understood. To address this concern, I conducted a series of field-based and numerical modeling studies in the McMurdo Dry Valleys of Antarctica (MDV), with a focus on Mullins and Friedman glaciers. I used data and results from geophysical surveys, ice-core collection and analysis, geomorphic mapping, micro-meteorological stations, and numerical-process models to (1) determine the precise origin and distribution of englacial and supraglacial debris within these buried-ice systems, (2) quantify the fundamental processes and feedbacks that govern interactions among englacial and supraglacial debris, (3) establish a process-based model to quantify the inventory of cosmogenic nuclides within englacial and supraglacial debris, and (4) isolate the governing relationships between the evolution of englacial /supraglacial debris and regional climate forcing. Results from 93 field excavations, 21 ice cores, and 24 km of ground-penetrating radar data show that Mullins and Friedman glaciers contain vast areas of clean glacier ice interspersed with inclined layers of concentrated debris. The similarity in the pattern of englacial debris bands across both glaciers, along with model results that call for negligible basal entrainment, is best explained by episodic environmental change at valley headwalls. To constrain better the timing of debris-band formation, I developed a modeling framework that tracks the accumulation of cosmogenic 3He in englacial and supraglacial debris. Results imply that ice within Mullins Glacier increases in age non-linearly from 12 ka to ˜220 ka in areas of active flow (up to >> 1.6 Ma in areas of slow-moving-to-stagnant ice) and that englacial debris bands originate with a periodicity of ˜41 ka. Modeling studies suggest that debris bands originate in synchronicity with changes in obliquity-paced, total integrated summer insolation. The implication is that the englacial structure and surface morphology of some cold-based, debris-covered glaciers can preserve high-resolution climate archives that exceed the typical resolution of Antarctic terrestrial deposits and moraine records.

From crater functions to partial differential equations: a new approach to ion bombardment induced nonequilibrium pattern formation.

PubMed

Norris, Scott A; Brenner, Michael P; Aziz, Michael J

2009-06-03

We develop a methodology for deriving continuum partial differential equations for the evolution of large-scale surface morphology directly from molecular dynamics simulations of the craters formed from individual ion impacts. Our formalism relies on the separation between the length scale of ion impact and the characteristic scale of pattern formation, and expresses the surface evolution in terms of the moments of the crater function. We demonstrate that the formalism reproduces the classical Bradley-Harper results, as well as ballistic atomic drift, under the appropriate simplifying assumptions. Given an actual set of converged molecular dynamics moments and their derivatives with respect to the incidence angle, our approach can be applied directly to predict the presence and absence of surface morphological instabilities. This analysis represents the first work systematically connecting molecular dynamics simulations of ion bombardment to partial differential equations that govern topographic pattern-forming instabilities.

Comparative analyses suggest that information transfer promoted sociality in male bats in the temperate zone.

PubMed

Safi, Kamran; Kerth, Gerald

2007-09-01

The evolution of sociality is a central theme in evolutionary biology. The vast majority of bats are social, which has been explained in terms of the benefits of communal breeding. However, the causes for segregated male groups remain unknown. In a comparative study, we tested whether diet and morphological adaptations to specific foraging styles, two factors known to influence the occurrence of information transfer, can predict male sociality. Our results suggest that the species most likely to benefit from information transfer--namely, those preying on ephemeral insects and with morphological adaptations to feeding in open habitat--are more likely to form male groups. Our findings also indicate that solitary life was the ancestral state of males and sociality evolved in several lineages. Beyond their significance for explaining the existence of male groups in bats, our findings highlight the importance of information transfer in the evolution of animal sociality.

Phylogenetics of Anthyllis (Leguminosae: Papilionoideae: Loteae): Partial incongruence between nuclear and plastid markers, a long branch problem and implications for morphological evolution.

PubMed

Degtjareva, Galina V; Valiejo-Roman, Carmen M; Samigullin, Tahir H; Guara-Requena, Miguel; Sokoloff, Dmitry D

2012-02-01

Phylogenetic relationships in the genus Anthyllis (Leguminosae: Papilionoideae: Loteae) were investigated using data from the nuclear ribosomal internal transcribed spacer regions (ITS) and three plastid regions (psbA-trnH intergenic spacer, petB-petD region and rps16 intron). Bayesian and maximum parsimony (MP) analysis of a concatenated plastid dataset recovered well-resolved trees that are topologically similar, with many clades supported by unique indels. MP and Bayesian analyses of the ITS sequence data recovered trees that have several well-supported topological differences, both among analyses, and to trees inferred from the plastid data. The most substantial of these concerns A. vulneraria and A. lemanniana, whose placement in the parsimony analysis of the ITS data appears to be due to a strong long-branch effect. Analysis of the secondary structure of the ITS1 spacer showed a strong bias towards transitions in A. vulneraria and A. lemanniana, many of which were also characteristic of certain outgroup taxa. This may contribute to the conflicting placement of this clade in the MP tree for the ITS data. Additional conflicts between the plastid and ITS trees were more taxonomically focused. These differences may reflect the occurrence of reticulate evolution between closely related species, including a possible hybrid origin for A. hystrix. The patterns of incongruence between the plastid and the ITS data seem to correlate with taxon ranks. All of our phylogenetic analyses supported the monophyly of Anthyllis (incl. Hymenocarpos). Although they are often taxonomically associated with Anthyllis, the genera Dorycnopsis and Tripodion are shown here to be more closely related to other genera of Loteae. We infer up to six major clades in Anthyllis that are morphologically well-characterized, and which could be recognized as sections. Four of these agree with various morphology-based classifications, while the other two are novel. We reconstruct the evolution of several morphological characteristics found only in Anthyllis or tribe Loteae. Some of these characters support major clades, while others show evidence of homoplasy within Anthyllis. Copyright © 2011 Elsevier Inc. All rights reserved.

Simulation of the evolution of root water foraging strategies in dry and shallow soils.

PubMed

Renton, Michael; Poot, Pieter

2014-09-01

The dynamic structural development of plants can be seen as a strategy for exploiting the limited resources available within their environment, and we would expect that evolution would lead to efficient strategies that reduce costs while maximizing resource acquisition. In particular, perennial species endemic to habitats with shallow soils in seasonally dry environments have been shown to have a specialized root system morphology that may enhance access to water resources in the underlying rock. This study aimed to explore these hypotheses by applying evolutionary algorithms to a functional-structural root growth model. A simulation model of a plant's root system was developed, which represents the dynamics of water uptake and structural growth. The model is simple enough for evolutionary optimization to be computationally feasible, yet flexible enough to allow a range of structural development strategies to be explored. The model was combined with an evolutionary algorithm in order to investigate a case study habitat with a highly heterogeneous distribution of resources, both spatially and temporally--the situation of perennial plants occurring on shallow soils in seasonally dry environments. Evolution was simulated under two contrasting fitness criteria: (1) the ability to find wet cracks in underlying rock, and (2) maximizing above-ground biomass. The novel approach successfully resulted in the evolution of more efficient structural development strategies for both fitness criteria. Different rooting strategies evolved when different criteria were applied, and each evolved strategy made ecological sense in terms of the corresponding fitness criterion. Evolution selected for root system morphologies which matched those of real species from corresponding habitats. Specialized root morphology with deeper rather than shallower lateral branching enhances access to water resources in underlying rock. More generally, the approach provides insights into both evolutionary processes and ecological costs and benefits of different plant growth strategies.

Experimental research on time-resolved evolution of cathode plasma expansion velocity in a long pulsed magnetically insulated coaxial diode

NASA Astrophysics Data System (ADS)

Zhu, Danni; Zhang, Jun; Zhong, Huihuang; Ge, Xingjun; Gao, Jingming

2018-02-01

Unlike planar diodes, separate research of the axial and radial plasma expansion velocities is difficult for magnetically insulated coaxial diodes. Time-resolved electrical diagnostic which is based on the voltage-ampere characteristics has been employed to study the temporal evolution of the axial and radial cathode plasma expansion velocities in a long pulsed magnetically insulated coaxial diode. Different from a planar diode with a "U" shaped profile of temporal velocity evolution, the temporal evolution trend of the axial expansion velocity is proved to be a "V" shaped profile. Apart from the suppression on the radial expansion velocity, the strong magnetic field is also conducive to slowing down the axial expansion velocity. Compared with the ordinary graphite cathode, the carbon velvet and graphite composite cathode showed superior characteristics as judged by the low plasma expansion velocity and long-term electrical stability as a promising result for applications where long-pulsed and reliable operation at high power is required.

The role of biotic forces in driving macroevolution: beyond the Red Queen

PubMed Central

Voje, Kjetil L.; Holen, Øistein H.; Liow, Lee Hsiang; Stenseth, Nils Chr.

2015-01-01

A multitude of hypotheses claim that abiotic factors are the main drivers of macroevolutionary change. By contrast, Van Valen's Red Queen hypothesis is often put forward as the sole representative of the view that biotic forcing is the main evolutionary driver. This imbalance of hypotheses does not reflect our current knowledge: theoretical work demonstrates the plausibility of biotically driven long-term evolution, whereas empirical work suggests a central role for biotic forcing in macroevolution. We call for a more pluralistic view of how biotic forces may drive long-term evolution that is compatible with both phenotypic stasis in the fossil record and with non-constant extinction rates. Promising avenues of research include contrasting predictions from relevant theories within ecology and macroevolution, as well as embracing both abiotic and biotic proxies while modelling long-term evolutionary data. By fitting models describing hypotheses of biotically driven macroevolution to data, we could dissect their predictions and transcend beyond pattern description, possibly narrowing the divide between our current understanding of micro- and macroevolution. PMID:25948685

'Junk' DNA and long-term phenotypic evolution in Silene section Elisanthe (Caryophyllaceae).

PubMed Central

Meagher, Thomas R; Costich, Denise E

2004-01-01

Nuclear DNA content variation over orders of magnitude across species has been attributed to 'junk' repetitive DNA with limited adaptive significance. By contrast, our previous work on Silene latifolia showed that DNA content is negatively correlated with flower size, a character of clear adaptive relevance. The present paper explores this relationship in a broader phylogenetic context to investigate the long-term evolutionary impacts of DNA content variation. The relationship between nuclear DNA content and phenotype variation was determined for four closely related species of Silene section Elisanthe (Caryophyllaceae). In addition to a consistent sexual dimorphism in DNA content across all of the species, we found DNA content variation among populations within, as well as among, species. We also found a general trend towards a negative correlation between DNA content and flower and leaf size over all four species, within males and females as well as overall. These results indicate that repetitive DNA may play a role in long-term phenotypic evolution. PMID:15801614

Influence of long-term thermal aging on the microstructural evolution of nuclear reactor pressure vessel materials: An atom probe study

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pareige, P.; Russell, K.F.; Stoller, R.E.

1998-03-01

Atom probe field ion microscopy (APFIM) investigations of the microstructure of unaged (as-fabricated) and long-term thermally aged ({approximately} 100,000 h at 280 C) surveillance materials from commercial reactor pressure vessel steels were performed. This combination of materials and conditions permitted the investigation of potential thermal-aging effects. This microstructural study focused on the quantification of the compositions of the matrix and carbides. The APFIM results indicate that there was no significant microstructural evolution after a long-term thermal exposure in weld, plate, or forging materials. The matrix depletion of copper that was observed in weld materials was consistent with the copper concentrationmore » in the matrix after the stress-relief heat treatment. The compositions of cementite carbides aged for 100,000 h were compared with the Thermocalc{trademark} prediction. The APFIM comparisons of materials under these conditions are consistent with the measured change in mechanical properties such as the Charpy transition temperature.« less

The tardigrade Hypsibius dujardini, a new model for studying the evolution of development.

PubMed

Gabriel, Willow N; McNuff, Robert; Patel, Sapna K; Gregory, T Ryan; Jeck, William R; Jones, Corbin D; Goldstein, Bob

2007-12-15

Studying development in diverse taxa can address a central issue in evolutionary biology: how morphological diversity arises through the evolution of developmental mechanisms. Two of the best-studied developmental model organisms, the arthropod Drosophila and the nematode Caenorhabditis elegans, have been found to belong to a single protostome superclade, the Ecdysozoa. This finding suggests that a closely related ecdysozoan phylum could serve as a valuable model for studying how developmental mechanisms evolve in ways that can produce diverse body plans. Tardigrades, also called water bears, make up a phylum of microscopic ecdysozoan animals. Tardigrades share many characteristics with C. elegans and Drosophila that could make them useful laboratory models, but long-term culturing of tardigrades historically has been a challenge, and there have been few studies of tardigrade development. Here, we show that the tardigrade Hypsibius dujardini can be cultured continuously for decades and can be cryopreserved. We report that H. dujardini has a compact genome, a little smaller than that of C. elegans or Drosophila, and that sequence evolution has occurred at a typical rate. H. dujardini has a short generation time, 13-14 days at room temperature. We have found that the embryos of H. dujardini have a stereotyped cleavage pattern with asymmetric cell divisions, nuclear migrations, and cell migrations occurring in reproducible patterns. We present a cell lineage of the early embryo and an embryonic staging series. We expect that these data can serve as a platform for using H. dujardini as a model for studying the evolution of developmental mechanisms.

Long Term Evolution of Planetary Systems with a Terrestrial Planet and a Giant Planet

NASA Technical Reports Server (NTRS)

Georgakarakos, Nikolaos; Dobbs-Dixon, Ian; Way, Michael J.

2016-01-01

We study the long term orbital evolution of a terrestrial planet under the gravitational perturbations of a giant planet. In particular, we are interested in situations where the two planets are in the same plane and are relatively close. We examine both possible configurations: the giant planet orbit being either outside or inside the orbit of the smaller planet. The perturbing potential is expanded to high orders and an analytical solution of the terrestrial planetary orbit is derived. The analytical estimates are then compared against results from the numerical integration of the full equations of motion and we find that the analytical solution works reasonably well. An interesting finding is that the new analytical estimates improve greatly the predictions for the timescales of the orbital evolution of the terrestrial planet compared to an octupole order expansion. Finally, we briefly discuss possible applications of the analytical estimates in astrophysical problems.

Expansion and retrenchment of the Swedish welfare state: a long-term approach.

PubMed

Buendía, Luis

2015-01-01

In this article, we will undertake a long-term analysis of the evolution of the Swedish welfare state, seeking to explain that evolution through the use of a systemic approach. That is, our approach will consider the interrelations between economic growth (EG), the sociopolitical institutional framework (IF), and the welfare state (WS)-understood as a set of institutions embracing the labor market and its regulation, the tax system, and the so-called social wage-in order to find the main variables that elucidate its evolution. We will show that the expansive phase of the Swedish welfare state can be explained by the symbiotic relationships developed in the WS-EG-IF interaction, whereas the period of welfare state retrenchment is one result of changes operating within the sociopolitical IF and EG bases. © The Author(s) 2015 Reprints and permissions:]br]sagepub.co.uk/journalsPermissions.nav.

A Model of Substitution Trajectories in Sequence Space and Long-Term Protein Evolution

PubMed Central

Usmanova, Dinara R.; Ferretti, Luca; Povolotskaya, Inna S.; Vlasov, Peter K.; Kondrashov, Fyodor A.

2015-01-01

The nature of factors governing the tempo and mode of protein evolution is a fundamental issue in evolutionary biology. Specifically, whether or not interactions between different sites, or epistasis, are important in directing the course of evolution became one of the central questions. Several recent reports have scrutinized patterns of long-term protein evolution claiming them to be compatible only with an epistatic fitness landscape. However, these claims have not yet been substantiated with a formal model of protein evolution. Here, we formulate a simple covarion-like model of protein evolution focusing on the rate at which the fitness impact of amino acids at a site changes with time. We then apply the model to the data on convergent and divergent protein evolution to test whether or not the incorporation of epistatic interactions is necessary to explain the data. We find that convergent evolution cannot be explained without the incorporation of epistasis and the rate at which an amino acid state switches from being acceptable at a site to being deleterious is faster than the rate of amino acid substitution. Specifically, for proteins that have persisted in modern prokaryotic organisms since the last universal common ancestor for one amino acid substitution approximately ten amino acid states switch from being accessible to being deleterious, or vice versa. Thus, molecular evolution can only be perceived in the context of rapid turnover of which amino acids are available for evolution. PMID:25415964

Post-rift magmatic evolution of the eastern North American “passive-aggressive” margin

USGS Publications Warehouse

Mazza, Sarah E.; Gazel, Esteban; Johnson, Elizabeth A.; Bizmis, Michael; McAleer, Ryan J.; Biryol, C. Berk

2017-01-01

Understanding the evolution of passive margins requires knowledge of temporal and chemical constraints on magmatism following the transition from supercontinent to rifting, to post-rifting evolution. The Eastern North American Margin (ENAM) is an ideal study location as several magmatic pulses occurred in the 200 My following rifting. In particular, the Virginia-West Virginia region of the ENAM has experienced two postrift magmatic pulses at ∼152 Ma and 47 Ma, and thus provides a unique opportunity to study the long-term magmatic evolution of passive margins. Here we present a comprehensive set of geochemical data that includes new 40Ar/39Ar ages, major and trace-element compositions, and analysis of radiogenic isotopes to further constrain their magmatic history. The Late Jurassic volcanics are bimodal, from basanites to phonolites, while the Eocene volcanics range from picrobasalt to rhyolite. Modeling suggests that the felsic volcanics from both the Late Jurassic and Eocene events are consistent with fractional crystallization. Sr-Nd-Pb systematics for the Late Jurassic event suggests HIMU and EMII components in the magma source that we interpret as upper mantle components rather than crustal interaction. Lithospheric delamination is the best hypothesis for magmatism in Virginia/West Virginia, due to tectonic instabilities that are remnant from the long-term evolution of this margin, resulting in a “passive-aggressive” margin that records multiple magmatic events long after rifting ended.

Role of Grain Boundaries under Long-Time Radiation

NASA Astrophysics Data System (ADS)

Zhu, Yichao; Luo, Jing; Guo, Xu; Xiang, Yang; Chapman, Stephen Jonathan

2018-06-01

Materials containing a high proportion of grain boundaries offer significant potential for the development of radiation-resistant structural materials. However, a proper understanding of the connection between the radiation-induced microstructural behavior of a grain boundary and its impact at long natural time scales is still missing. In this Letter, point defect absorption at interfaces is summarized by a jump Robin-type condition at a coarse-grained level, wherein the role of interface microstructure is effectively taken into account. Then a concise formula linking the sink strength of a polycrystalline aggregate with its grain size is introduced and is well compared with experimental observation. Based on the derived model, a coarse-grained formulation incorporating the coupled evolution of grain boundaries and point defects is proposed, so as to underpin the study of long-time morphological evolution of grains induced by irradiation. Our simulation results suggest that the presence of point defect sources within a grain further accelerates its shrinking process, and radiation tends to trigger the extension of twin boundary sections.

On the Evolution of Human Language.

ERIC Educational Resources Information Center

Lieberman, Philip

Human linguistic ability depends, in part, on the gradual evolution of man's supralaryngeal vocal tract. The anatomic basis of human speech production is the result of a long evolutionary process in which the Darwinian process of natural selection acted to retain mutations. For auditory perception, the listener operates in terms of the acoustic…

Thyroid status alters gill ionic metabolism and chloride cell morphology as evidenced by scanning electron microscopy in a teleost Anabas testudineus (Bloch): short and long term in vivo study.

PubMed

Sreejith, P; Beyo, R S; Prasad, G; Sunny, F; Oommen, O V

2007-12-01

Gill is the main organ of osmotic regulation in teleosts and chloride cells are the sites of ion transport across gill epithelium. Thyroid hormones are implicated in the regulation of osmotic balance in teleosts also. Treatment with 6-propyl thiouracil (6-PTU) inhibited the membrane bound enzyme Na+K+ ATPase in the gill while triiodothyronine (T3) injection stimulated it in a short-term in vivo study in the teleost Anabas testudineus. Na+, K+ and Ca2+ ions were also decreased in the 6-PTU treated fish and the T3 treatment increased their concentrations in the gill lamellae. The gill morphology also changed according to the thyroid status in the long term study. 6-PTU treatment altered the typical serrated morphology of the gill lamellae, while the T3 treatment reversed it. T3 injection increased the density of pavement and chloride cells as evidenced by scanning electron microscopy. The results demonstrate that physiological status of the thyroid influences gill Na+ pump activity and chloride cell morphological changes. Further, the study suggests a regulatory role of T3 on gill ions (Na+, K+ and Ca2+), Na+K+ and Ca2+ ATPase activity and the different gill cell types in A. testudineus.

Assessment of genetic and epigenetic variation during long-term Taxus cell culture.

PubMed

Fu, Chunhua; Li, Liqin; Wu, Wenjuan; Li, Maoteng; Yu, Xiaoqing; Yu, Longjiang

2012-07-01

Gradual loss of secondary metabolite production is a common obstacle in the development of a large-scale plant cell production system. In this study, cell morphology, paclitaxel (Taxol®) biosynthetic ability, and genetic and epigenetic variations in the long-term culture of Taxus media cv Hicksii cells were assessed over a 5-year period to evaluate the mechanisms of the loss of secondary metabolites biosynthesis capacity in Taxus cell. The results revealed that morphological variations, gradual loss of paclitaxel yield and decreased transcriptional level of paclitaxel biosynthesis key genes occurred during long-term subculture. Genetic and epigenetic variations in these cultures were also studied at different times during culture using amplified fragment-length polymorphism (AFLP), methylation-sensitive amplified polymorphism (MSAP), and high-performance liquid chromatography (HPLC) analyses. A total of 32 primer combinations were used in AFLP amplification, and none of the AFLP loci were found to be polymorphic, thus no major genetic rearrangements were detected in any of the tested samples. However, results from both MSAP and HPLC indicated that there was a higher level of DNA methylation in the low-paclitaxel yielding cell line after long-term culture. Based on these results, we proposed that accumulation of paclitaxel in Taxus cell cultures might be regulated by DNA methylation. To our knowledge, this is the first report of increased methylation with the prolongation of culture time in Taxus cell culture. It provides substantial clues for exploring the gradual loss of the taxol biosynthesis capacity of Taxus cell lines during long-term subculture. DNA methylation maybe involved in the regulation of paclitaxel biosynthesis in Taxus cell culture.

Long-term morphological evolution of a morphologically active man-made stream in the Netherlands

NASA Astrophysics Data System (ADS)

Eekhout, J.; Hoitink, T.

2010-12-01

Around 1770, a straight artificial canal (Gelderns-Nierskanaal) has been constructed between the River Niers and the River Meuse, crossing the border between Germany and the Netherlands, with the purpose of reducing flood risk in the downstream reaches of the River Niers. Whereas the German part of the canal is kept straight throughout time, the Dutch part was left unprotected and developed into a morphodynamically active stream featuring a meandering planform. The current planform and in-channel morphology are analyzed using airborne LiDAR data and historical topographic maps. Around the turn of the 18th century, the first attempts were made to make detailed topographic maps. From this time on, at least 16 topographic maps of the area around the stream were made. With the use of these historical topographic maps, a reconstruction is made of the planimetric shape of the stream over a period of 240 years. The LiDAR data show old meander belts at several places around the stream. Those belts compare well with the topographic maps. The sinuosity increases from upstream to downstream. This could be a consequence of the valley slope, where the upper part is flat and the slope increases in downstream direction. Besides, the LiDAR data show that erosion resulted in an incised valley, with dimensions to 50 m in width and 6 m in depth. Both the datasets are combined to make an estimate of the historical sediment budget of the stream.

Jupiter cloud morphology and zonal winds from ground-based observations before and during Juno exploration

NASA Astrophysics Data System (ADS)

Sanchez-Lavega, A.; Hueso, R.; Perez-Hoyos, S.; Iñurrigarro, P.; Mendikoa, I.; Rojas, J. F.

2016-12-01

We present the results of a long term campaign between September 2015 and August 2016 of imaging of Jupiter's cloud morphology and zonal winds in the 0.38 - 1.7 μm wavelength spectral range. We use PlanetCam lucky imaging camera at the 2.2m telescope at Calar Alto Observatory in Spain, and for the optical range, the contribution of a network of observers to the Planetary Virtual Observatory Laboratory database (PVOL-IOPW at http://pvol.ehu.eus). We have complemented the study with Hubble Space Telescope WFC3 camera images taken in the 0.275 - 0.89 μm wavelength spectral range during the OPAL program on 9 February 2016. The PlanetCam images have been calibrated in radiance using spectrophotometric standard stars providing absolute reflectivity across the disk in a large series of broadband and narrowband filters sensitive to the altitude distribution and size of aerosols above the ammonia cloud level, and to the spectral dependence of the chromophore coloring agents. The cloud morphology evolution has been studied with an horizontal resolution ranging from 150 to 1000 km. Zonal wind profiles have been retrieved along the whole observing period from tracking cloud motions that span the latitude range from -80° to +77º. Combining all these results we characterized the 3D-dynamical state and cloud and haze distribution in Jupiter's atmosphere in the altitude range between 10 mbar and 1.5 bar before and during Juno initial exploration.

Hydrodynamic controls on the long-term construction of large river floodplains and alluvial ridges

NASA Astrophysics Data System (ADS)

Nicholas, Andrew; Aalto, Rolf; Sambrook Smith, Gregory; Schwendel, Arved

2017-04-01

Floodplain construction involves the interplay between channel belt sedimentation and avulsion, overbank deposition of fines, and sediment reworking by channel migration. Each of these processes is controlled, in part, by within-channel and/or overbank hydraulics. However, while spatially-distributed hydrodynamic models are used routinely to simulate floodplain inundation and overbank sedimentation during individual floods, most existing models of long-term floodplain construction and alluvial architecture do not account for flood hydraulics explicitly. Instead, floodplain sedimentation is typically modelled as an exponential function of distance from the river, and avulsion thresholds are defined using topographic indices that quantify alluvial ridge morphology (e.g., lateral:downstream slope ratios or metrics of channel belt super-elevation). Herein, we apply a hydraulically driven model of floodplain evolution, in order to quantify the controls on alluvial ridge construction and avulsion likelihood in large lowland rivers. We combine a simple model of meander migration and cutoff with a 2D grid-based model of flood hydrodynamics and overbank sedimentation. The latter involves a finite volume solution of the shallow water equations and an advection-diffusion model for suspended sediment transport. The model is used to carry out a series of numerical experiments to investigate floodplain construction for a range of flood regimes and sediment supply scenarios, and results are compared to field data from the Rio Beni system, northern Bolivia. Model results, supported by field data, illustrate that floodplain sedimentation is characterised by a high degree of intermittency that is driven by autogenic mechanisms (i.e. even in the absence of temporal variations in flood magnitude and sediment supply). Intermittency in overbank deposits occurs over a range of temporal and spatial scales, and is associated with the interaction between channel migration dynamics and crevasse splay formation. Moreover, alluvial ridge construction, by splay deposition, is controlled by the balance between in-channel and overbank sedimentation rates, and by ridge reworking linked to channel migration. The resulting relationship between sedimentation rates, ridge morphology and avulsion likelihood is more complex than that which is incorporated with existing models of long-term floodplain construction that neglect flood hydraulics. These results have implications for the interpretation of floodplain deposits as records of past flood regimes, and for the controls on the alluvial architecture of large river floodplains.

Gene Regulatory Networks, Homology, and the Early Panarthropod Fossil Record.

PubMed

Tweedt, Sarah M

2017-09-01

The arthropod body plan is widely believed to have derived from an ancestral form resembling Cambrian-aged fossil lobopodians, and interpretations of morphological and molecular data have long favored this hypothesis. It is possible, however, that appendages and other morphologies observed in extinct and living panarthropods evolved independently. The key to distinguishing between morphological homology and homoplasy lies in the study of developmental gene regulatory networks (GRNs), and specifically, in determining the unique genetic circuits that construct characters. In this study, I discuss character identity and panarthropod appendage evolution within a developmental GRN framework, with a specific focus on potential limb character identity networks ("ChINs"). I summarize recent molecular studies, and argue that current data do not rule out the possibility of independent panarthropod limb evolution. The link between character identity and GRN architecture has broad implications for homology assessment, and this genetic framework offers alternative approaches to fossil character coding, phylogenetic analyses, and future research into the origin of the arthropod body plan. © The Author 2017. Published by Oxford University Press on behalf of the Society for Integrative and Comparative Biology. All rights reserved. For permissions please email: journals.permissions@oup.com.

Tracing ancient evolutionary divergence in parasites.

PubMed

Tinsley, Richard C; Tinsley, Matthew C

2016-12-01

For parasitic platyhelminths that generally lack a fossil record, there is little information on the pathways of morphological change during evolution. Polystomatid monogeneans are notable for their evolutionary diversification, having originated from ancestors on fish and radiated in parallel with tetrapod vertebrates over more than 425 million years (My). This study focuses on the genus Polystomoides that occurs almost worldwide on freshwater chelonian reptiles. Morphometric data show a major divergence in structural adaptations for attachment; this correlates with a dichotomy in micro-environmental conditions in habitats within the hosts. Species infecting the urinary tract have attachment organs with large hamuli and small suckers; species in the oro-nasal tract differ fundamentally, having small hamuli and large suckers. Zoogeographical and molecular evidence supports ancient separation of these site-specific clades: a new genus is proposed - Uropolystomoides - containing urinary tract species distinct from Polystomoides sensu stricto in oro-nasal sites. Aside from differences in attachment adaptations, body plans have probably changed little over perhaps 150 My. This case contrasts markedly with polystomatids in other vertebrate groups where major morphological changes have evolved over much shorter timescales; the chelonian parasites show highly stable morphology across their global distribution over a long period of evolution, exemplifying 'living fossils'.

Adapting Digital Libraries to Continual Evolution

NASA Technical Reports Server (NTRS)

Barkstrom, Bruce R.; Finch, Melinda; Ferebee, Michelle; Mackey, Calvin

2002-01-01

In this paper, we describe five investment streams (data storage infrastructure, knowledge management, data production control, data transport and security, and personnel skill mix) that need to be balanced against short-term operating demands in order to maximize the probability of long-term viability of a digital library. Because of the rapid pace of information technology change, a digital library cannot be a static institution. Rather, it has to become a flexible organization adapted to continuous evolution of its infrastructure.

Character trees from transcriptome data: Origin and individuation of morphological characters and the so-called "species signal".

PubMed

Musser, Jacob M; Wagner, Günter P

2015-11-01

We elaborate a framework for investigating the evolutionary history of morphological characters. We argue that morphological character trees generated by phylogenetic analysis of transcriptomes provide a useful tool for identifying causal gene expression differences underlying the development and evolution of morphological characters. They also enable rigorous testing of different models of morphological character evolution and origination, including the hypothesis that characters originate via divergence of repeated ancestral characters. Finally, morphological character trees provide evidence that character transcriptomes undergo concerted evolution. We argue that concerted evolution of transcriptomes can explain the so-called "species signal" found in several recent comparative transcriptome studies. The species signal is the phenomenon that transcriptomes cluster by species rather than character type, even though the characters are older than the respective species. We suggest the species signal is a natural consequence of concerted gene expression evolution resulting from mutations that alter gene regulatory network interactions shared by the characters under comparison. Thus, character trees generated from transcriptomes allow us to investigate the variational independence, or individuation, of morphological characters at the level of genetic programs. © 2015 Wiley Periodicals, Inc.

Investigation of Chirality Selection Mechanism of Single-Walled Carbon Nanotube

DTIC Science & Technology

2015-07-17

Final 3. DATES COVERED (From - To) 01-June-2014 to 31-May-2015 4. TITLE AND SUBTITLE Investigation of Chirality Selection Mechanism of...of two significant mechanistic aspects of carbon nanotube (CNT) array growth under chemical vapor deposition conditions: chirality selectivity and...affected by the morphological evolution of catalyst particles. 15. SUBJECT TERMS Carbon Nanotubes, Chirality , Processing, Catalysis

Functional constraints on the evolution of long butterfly proboscides: lessons from Neotropical skippers (Lepidoptera: Hesperiidae).

PubMed

Bauder, J A S; Morawetz, L; Warren, A D; Krenn, H W

2015-03-01

Extremely long proboscides are rare among butterflies outside of the Hesperiidae, yet representatives of several genera of skipper butterflies possess proboscides longer than 50 mm. Although extremely elongated mouthparts can be regarded as advantageous adaptations to gain access to nectar in deep-tubed flowers, the scarcity of long-proboscid butterflies is a phenomenon that has not been adequately accounted for. So far, the scarceness was explained by functional costs arising from increased flower handling times caused by decelerated nectar intake rates. However, insects can compensate for the negative influence of a long proboscis through changes in the morphological configuration of the feeding apparatus. Here, we measured nectar intake rates in 34 species representing 21 Hesperiidae genera from a Costa Rican lowland rainforest area to explore the impact of proboscis length, cross-sectional area of the food canal and body size on intake rate. Long-proboscid skippers did not suffer from reduced intake rates due to their large body size and enlarged food canals. In addition, video analyses of the flower-visiting behaviour revealed that suction times increased with proboscis length, suggesting that long-proboscid skippers drink a larger amount of nectar from deep-tubed flowers. Despite these advantages, we showed that functional costs of exaggerated mouthparts exist in terms of longer manipulation times per flower. Finally, we discuss the significance of scaling relationships on the foraging efficiency of butterflies and why some skipper taxa, in particular, have evolved extremely long proboscides. © 2015 The Authors. Journal of Evolutionary Biology published by John Wiley & Sons ltd on behalf of European Society for Evolutionary Biology.

Bridging Grafts and Transient Nerve Growth Factor Infusions Promote Long-Term Central Nervous System Neuronal Rescue and Partial Functional Recovery

NASA Astrophysics Data System (ADS)

Tuszynski, Mark H.; Gage, Fred H.

1995-05-01

Grafts of favorable axonal growth substrates were combined with transient nerve growth factor (NGF) infusions to promote morphological and functional recovery in the adult rat brain after lesions of the septohippocampal projection. Long-term septal cholinergic neuronal rescue and partial hippocampal reinnervation were achieved, resulting in partial functional recovery on a simple task assessing habituation but not on a more complex task assessing spatial reference memory. Control animals that received transient NGF infusions without axonal-growth-promoting grafts lacked behavioral recovery but also showed long-term septal neuronal rescue. These findings indicate that (i) partial recovery from central nervous system injury can be induced by both preventing host neuronal loss and promoting host axonal regrowth and (ii) long-term neuronal loss can be prevented with transient NGF infusions.

Real-time evolution of a large-scale relativistic jet

NASA Astrophysics Data System (ADS)

Martí, Josep; Luque-Escamilla, Pedro L.; Romero, Gustavo E.; Sánchez-Sutil, Juan R.; Muñoz-Arjonilla, Álvaro J.

2015-06-01

Context. Astrophysical jets are ubiquitous in the Universe on all scales, but their large-scale dynamics and evolution in time are hard to observe since they usually develop at a very slow pace. Aims: We aim to obtain the first observational proof of the expected large-scale evolution and interaction with the environment in an astrophysical jet. Only jets from microquasars offer a chance to witness the real-time, full-jet evolution within a human lifetime, since they combine a "short", few parsec length with relativistic velocities. Methods: The methodology of this work is based on a systematic recalibraton of interferometric radio observations of microquasars available in public archives. In particular, radio observations of the microquasar GRS 1758-258 over less than two decades have provided the most striking results. Results: Significant morphological variations in the extended jet structure of GRS 1758-258 are reported here that were previously missed. Its northern radio lobe underwent a major morphological variation that rendered the hotspot undetectable in 2001 and reappeared again in the following years. The reported changes confirm the Galactic nature of the source. We tentatively interpret them in terms of the growth of instabilities in the jet flow. There is also evidence of surrounding cocoon. These results can provide a testbed for models accounting for the evolution of jets and their interaction with the environment.

Naturally occurring variation in tadpole morphology and performance linked to predator regime

PubMed Central

Johnson, James B; Saenz, Daniel; Adams, Cory K; Hibbitts, Toby J

2015-01-01

Divergent natural selection drives a considerable amount of the phenotypic and genetic variation observed in natural populations. For example, variation in the predator community can generate conflicting selection on behavioral, life-history, morphological, and performance traits. Differences in predator regime can subsequently increase phenotypic and genetic variations in the population and result in the evolution of reproductive barriers (ecological speciation) or phenotypic plasticity. We evaluated morphology and swimming performance in field collected Bronze Frog larvae (Lithobates clamitans) in ponds dominated by predatory fish and those dominated by invertebrate predators. Based on previous experimental findings, we hypothesized that tadpoles from fish-dominated ponds would have small bodies, long tails, and large tail muscles and that these features would facilitate fast-start speed. We also expected to see increased tail fin depth (i.e., the tail-lure morphology) in tadpoles from invertebrate-dominated ponds. Our results support our expectations with respect to morphology in affecting swimming performance of tadpoles in fish-dominated ponds. Furthermore, it is likely that divergent natural selection is playing a role in the diversification on morphology and locomotor performance in this system. PMID:26357533

Utilization of PD modalities: evolution.

PubMed

Venkataraman, Vijaya; Nolph, Karl D

2002-01-01

In the early 1960s, peritoneal dialysis (PD) was introduced as a form of long-term maintenance therapy in patients with end-stage renal disease (ESRD). We have come a long way since. Increasing understanding of peritoneal kinetic behavior, its innovative manipulation to meet patient needs, critical monitoring of clinical outcomes, and parallel development in technology have all contributed to the worldwide success of the therapy over the past four decades. In this article we review the evolution of the various PD modalities in the context of these factors.

Hidden long evolutionary memory in a model biochemical network

NASA Astrophysics Data System (ADS)

Ali, Md. Zulfikar; Wingreen, Ned S.; Mukhopadhyay, Ranjan

2018-04-01

We introduce a minimal model for the evolution of functional protein-interaction networks using a sequence-based mutational algorithm, and apply the model to study neutral drift in networks that yield oscillatory dynamics. Starting with a functional core module, random evolutionary drift increases network complexity even in the absence of specific selective pressures. Surprisingly, we uncover a hidden order in sequence space that gives rise to long-term evolutionary memory, implying strong constraints on network evolution due to the topology of accessible sequence space.

Ground penetrating radar and differential global positioning system data collected in April 2016 from Fire Island, New York

USGS Publications Warehouse

Forde, Arnell S.; Bernier, Julie C.; Miselis, Jennifer L.

2018-02-22

Researchers from the U.S. Geological Survey (USGS) conducted a long-term coastal morphologic-change study at Fire Island, New York, prior to and after Hurricane Sandy impacted the area in October 2012. The Fire Island Coastal Change project objectives include understanding the morphologic evolution of the barrier island system on a variety of time scales (months to centuries) and resolving storm-related impacts, post-storm beach response, and recovery. In April 2016, scientists from the USGS St. Petersburg Coastal and Marine Science Center conducted geophysical and sediment sampling surveys on Fire Island to characterize and quantify spatial variability in the subaerial geology with the goal of subsequently integrating onshore geology with other surf zone and nearshore datasets.  This report, along with the associated USGS data release, serves as an archive of ground penetrating radar (GPR) and post-processed differential global positioning system (DGPS) data collected from beach and back-barrier environments on Fire Island, April 6–13, 2016 (USGS Field Activity Number 2016-322-FA). Data products, including unprocessed GPR trace data, processed DGPS data, elevation-corrected subsurface profile images, geographic information system files, and accompanying Federal Geographic Data Committee metadata are available for download.

Morphological State as a Predictor for Reintervention and Mortality After EVAR for AAA

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ohrlander, Tomas; Dencker, Magnus; Acosta, Stefan, E-mail: stefan.acosta@telia.com

2012-10-15

Purpose: This study was designed to assess aorto-iliac morphological characteristics in relation to reintervention and all-cause long-term mortality in patients undergoing standard EVAR for infrarenal AAA. Methods: Patients treated with EVAR (Zenith{sup Registered-Sign} Stentgrafts, Cook) between May 1998 and February 2006 were prospectively enrolled in a computerized database where comorbidities and preoperative aneurysm morphology were entered. Reinterventions and mortality were checked until December 1, 2010. Median follow-up time was 68 months. Results: A total of 304 patients were included, of which 86% were men. Median age was 74 years. The reintervention rate was 23.4% (71/304). A greater diameter of themore » common iliac artery (p = 0.037; hazard ratio (HR) 1.037 [1.002-1.073]) was an independent factor for an increased number of reinterventions. The 30-day mortality rate was 3.0% (9/304). Aneurysm-related deaths due to AAA occurred in 4.9% (15/304). Five patients died due to a concomitant ruptured thoracic aortic aneurysm. The mortality until end of follow-up was 54.3% (165/304). The proportion of deaths caused by vascular diseases was 61.6%. The severity of angulation of the iliac arteries (p = 0.014; HR 1.018 [95% confidence interval (CI) 1.004-1.033]) and anemia (p = 0.044; HR 2.79 [95% CI 1.029-7.556]) remained as independent factors associated with all-cause long-term mortality. The crude reintervention-free survival rate at 1, 3, and 5 years was 84.5%, 64.8%, and 51.6%, respectively. Conclusions: The initial aorto-iliac morphological state in patients scheduled for standard EVAR for AAA seems to be strongly related to the need for reinterventions and long-term mortality.« less

Role of Utility and Inference in the Evolution of Functional Information

PubMed Central

Sharov, Alexei A.

2009-01-01

Functional information means an encoded network of functions in living organisms from molecular signaling pathways to an organism’s behavior. It is represented by two components: code and an interpretation system, which together form a self-sustaining semantic closure. Semantic closure allows some freedom between components because small variations of the code are still interpretable. The interpretation system consists of inference rules that control the correspondence between the code and the function (phenotype) and determines the shape of the fitness landscape. The utility factor operates at multiple time scales: short-term selection drives evolution towards higher survival and reproduction rate within a given fitness landscape, and long-term selection favors those fitness landscapes that support adaptability and lead to evolutionary expansion of certain lineages. Inference rules make short-term selection possible by shaping the fitness landscape and defining possible directions of evolution, but they are under control of the long-term selection of lineages. Communication normally occurs within a set of agents with compatible interpretation systems, which I call communication system. Functional information cannot be directly transferred between communication systems with incompatible inference rules. Each biological species is a genetic communication system that carries unique functional information together with inference rules that determine evolutionary directions and constraints. This view of the relation between utility and inference can resolve the conflict between realism/positivism and pragmatism. Realism overemphasizes the role of inference in evolution of human knowledge because it assumes that logic is embedded in reality. Pragmatism substitutes usefulness for truth and therefore ignores the advantage of inference. The proposed concept of evolutionary pragmatism rejects the idea that logic is embedded in reality; instead, inference rules are constructed within each communication system to represent reality and they evolve towards higher adaptability on a long time scale. PMID:20160960

Fire feedbacks over geological time and the evolution of atmospheric oxygen concentration

NASA Astrophysics Data System (ADS)

Mills, B.; Belcher, C.; Lenton, T. M.

2017-12-01

During the 4.5 billion year history of the Earth, the concentration of oxygen in the atmosphere has risen from trace levels to today's 21%. Yet over the last 400 million years, O2 concentration appears to have remained within a relatively narrow range (around 15% - 30%), despite dramatic changes in the nature of global biogeochemical cycling. This stability has been crucial for continued animal evolution, and is thought to have arisen through feedbacks between oxygen, wildfire and plant productivity: the strong oxygen- dependence of fire initiation and spread means that global photosynthetic primary productivity is suppressed when oxygen levels are high, and enhanced when levels are low. We present biogeochemical modelling of the long term carbon and oxygen cycles, which aims to capture the operation of the wildfire feedback alongside other key processes. We find that wildfire can effectively stabilize long term oxygen concentrations, but that the nature of this feedback has changed as plant evolution has provided different fuels. Specifically, the evolution of early angiosperms during the Cretaceous period provided new understory fuels that more easily facilitated crown and canopy fires. Adding these dynamics to our model produces a more stable system over long timescales, and the model predicts that oxygen concentration has declined towards the present day - a prediction that is supported by other independent estimates.

Acoustic experience shapes female mate choice in field crickets

PubMed Central

Bailey, Nathan W; Zuk, Marlene

2008-01-01

Female choice can drive the evolution of extravagant male traits. In invertebrates, the influence of prior social experience on female choice has only recently been considered. To better understand the evolutionary implications of experience-mediated plasticity in female choice, we investigated the effect of acoustic experience during rearing on female responsiveness to male song in the field cricket Teleogryllus oceanicus. Acoustic experience has unique biological relevance in this species: a morphological mutation has rendered over 90 per cent of males on the Hawaiian island of Kauai silent in fewer than 20 generations, impeding females' abilities to locate potential mates. Females reared in silent conditions mimicking Kauai were less discriminating of male calling song and more responsive to playbacks, compared with females that experienced song during rearing. Our results to our knowledge, are the first demonstration of long-term effects of acoustic experience in an arthropod, and suggest that female T. oceanicus may be able to compensate for the reduced availability of long-range male sexual signals by increasing their responsiveness to the few remaining signallers. Understanding the adaptive significance of experience-mediated plasticity in female choice provides insight into processes that facilitate rapid evolutionary change and shape sexual selection pressure in natural populations. PMID:18700205

Spatial pattern of reference evapotranspiration change and its temporal evolution over Southwest China

NASA Astrophysics Data System (ADS)

Sun, Shanlei; Wang, Guojie; Huang, Jin; Mu, Mengyuan; Yan, Guixia; Liu, Chunwei; Gao, Chujie; Li, Xing; Yin, Yixing; Zhang, Fangmin; Zhu, Siguang; Hua, Wenjian

2017-11-01

Due to the close relationship of climate change with reference evapotranspiration (ETo), detecting changes in ETo spatial distribution and its temporal evolution at local and regional levels is favorable to comprehensively understand climate change-induced impacts on hydrology and agriculture. In this study, the objective is to identify whether climate change has caused variation of ETo spatial distribution in different analysis periods [i.e., long- (20-year), medium- (10-year), and short-term (5-year)] and to investigate its temporal evolution (namely, when these changes happened) at annual and monthly scales in Southwest China (SWC). First, we estimated ETo values using the United Nations Food and Agriculture Organization (FAO) Penman-Monteith equation, based on historical climate data measured at 269 weather sites during 1973-2012. The analysis of variance (ANOVA) results indicated that the spatial pattern of annual ETo had significantly changed during the past 40 years, particularly in west SWC for the long-term analysis period, and west and southeast SWC in both medium- and short-term periods, which corresponded to the percent area of significant differences which were 21.9, 58.0, and 48.2 %, respectively. For investigating temporal evolution of spatial patterns of annual ETo, Duncan's multiple range test was used, and we found that the most significant changes appeared during 1988-2002 with the significant area of higher than 25.0 %. In addition, for long-, medium-, and short-term analysis periods, the spatial distribution has significantly changed during March, September, November, and December, especially in the corresponding periods of 1988-1997, 1983-1992, 1973-1977, and 1988-2002. All in all, climate change has resulted in significant ETo changes in SWC since the 1970s. Knowledge of climate change-induced spatial distribution of ETo and its temporal evolution would aid in formulating strategies for water resources and agricultural managements.

Toward a theory of multilevel evolution: long-term information integration shapes the mutational landscape and enhances evolvability.

PubMed

Hogeweg, Paulien

2012-01-01

Most of evolutionary theory has abstracted away from how information is coded in the genome and how this information is transformed into traits on which selection takes place. While in the earliest stages of biological evolution, in the RNA world, the mapping from the genotype into function was largely predefined by the physical-chemical properties of the evolving entities (RNA replicators, e.g. from sequence to folded structure and catalytic sites), in present-day organisms, the mapping itself is the result of evolution. I will review results of several in silico evolutionary studies which examine the consequences of evolving the genetic coding, and the ways this information is transformed, while adapting to prevailing environments. Such multilevel evolution leads to long-term information integration. Through genome, network, and dynamical structuring, the occurrence and/or effect of random mutations becomes nonrandom, and facilitates rapid adaptation. This is what does happen in the in silico experiments. Is it also what did happen in biological evolution? I will discuss some data that suggest that it did. In any case, these results provide us with novel search images to tackle the wealth of biological data.

Long-term changes in regular and low-frequency earthquake inter-event times near Parkfield, CA

NASA Astrophysics Data System (ADS)

Wu, C.; Shelly, D. R.; Johnson, P. A.; Gomberg, J. S.; Peng, Z.

2012-12-01

The temporal evolution of earthquake inter-event time may provide important clues for the timing of future events and underlying physical mechanisms of earthquake nucleation. In this study, we examine inter-event times from 12-yr catalogs of ~50,000 earthquakes and ~730,000 LFEs in the vicinity of the Parkfield section of the San Andreas Fault. We focus on the long-term evolution of inter-event times after the 2003 Mw6.5 San Simeon and 2004 Mw6.0 Parkfield earthquakes. We find that inter-event times decrease by ~4 orders of magnitudes after the Parkfield and San Simeon earthquakes and are followed by a long-term recovery with time scales of ~3 years and more than 8 years for earthquakes along and to the southwest of the San Andreas fault, respectively. The differing long-term recovery of the earthquake inter-event times is likely a manifestation of different aftershock recovery time scales that reflect the different tectonic loading rates in the two regions. We also observe a possible decrease of LFE inter-event times in some LFE families, followed by a recovery with time scales of ~4 months to several years. The drop in the recurrence time of LFE after the Parkfield earthquake is likely caused by a combination of the dynamic and positive static stress induced by the Parkfield earthquake, and the long-term recovery in LFE recurrence time could be due to post-seismic relaxation or gradual recovery of the fault zone material properties. Our on-going work includes better constraining and understanding the physical mechanisms responsible for the observed long-term recovery in earthquake and LFE inter-event times.

GENETIC EVOLUTION OF BACTERIOPHAGE, I. HYBRIDS BETWEEN UNRELATED BACTERIOPHAGES P22 AND FELS 2*

PubMed Central

Yamamoto, Nobuto

1969-01-01

A new bacteriophage species, designated F22, was isolated from phage P22 stocks grown on Salmonella typhimurium Q1 lysogenic for Fels 2 at a frequency of less than 10-11. P22 has a very short tail with a hexagonal base plate and six spikes. Phage Fels 2 is morphologically similar to E. coli T-even phages, having a long tail with a contractile sheath and carrying no genetic region related to P22. Phage F22 is morphologically and serologically indistinguishable from Fels 2, but carries the c(c1, c2, and c3) markers of P22. The color markers h21, g, and m3 of P22 do not appear in F22. Thus, F22 is evidently a recombinant between the unrelated bacteriophages P22 and Fels 2. The recombination between unrelated bacteriophages could play an important role in the evolution of bacteriophages. Images PMID:4890254

A rich diversity of opercle bone shape among teleost fishes

PubMed Central

Small, Clayton M.; Knope, Matthew L.

2017-01-01

The opercle is a prominent craniofacial bone supporting the gill cover in all bony fish and has been the subject of morphological, developmental, and genetic investigation. We surveyed the shapes of this bone among 110 families spanning the teleost tree and examined its pattern of occupancy in a principal component-based morphospace. Contrasting with expectations from the literature that suggest the local morphospace would be only sparsely occupied, we find primarily dense, broad filling of the morphological landscape, indicating rich diversity. Phylomorphospace plots suggest that dynamic evolution underlies the observed spatial patterning. Evolutionary transits through the morphospaces are sometimes long, and occur in a variety of directions. The trajectories seem to represent both evolutionary divergences and convergences, the latter supported by convevol analysis. We suggest that that this pattern of occupancy reflects the various adaptations of different groups of fishes, seemingly paralleling their diverse marine and freshwater ecologies and life histories. Opercle shape evolution within the acanthomorphs, spiny ray-finned fishes, appears to have been especially dynamic. PMID:29281662

Morphologic Evolution of the Mount St. Helens Crater Area, Washington

NASA Technical Reports Server (NTRS)

Beach, G. L.

1985-01-01

The large rockslide-avalanche that preceded the eruption of Mount St. Helens on 18 May 1980 removed approximately 2.8 cubic km of material from the summit and north flank of the volcano, forming a horseshoe-shaped crater 2.0 km wide and 3.9 km long. A variety of erosional and depositional processes, notably mass wasting and gully development, acted to modify the topographic configuration of the crater area. To document this morphologic evolution, a series of annual large-scale topographic maps is being produced as a base for comparitive geomorphic analysis. Four topographic maps of the Mount St. Helens crater area at a scale of 1:4000 were produced by the National Mapping Division of the U. S. Geological Survey. Stereo aerial photography for the maps was obtained on 23 October 1980, 10 September 1981, 1 September 1982, and 17 August 1983. To quantify topographic changes in the study area, each topographic map is being digitized and corresponding X, Y, and Z values from successive maps are being computer-compared.

Dating placentalia: Morphological clocks fail to close the molecular fossil gap.

PubMed

Puttick, Mark N; Thomas, Gavin H; Benton, Michael J

2016-04-01

Dating the origin of Placentalia has been a contentious issue for biologists and paleontologists. Although it is likely that crown-group placentals originated in the Late Cretaceous, nearly all molecular clock estimates point to a deeper Cretaceous origin. An approach with the potential to reconcile this discrepancy could be the application of a morphological clock. This would permit the direct incorporation of fossil data in node dating, and would break long internal branches of the tree, so leading to improved estimates of node ages. Here, we use a large morphological dataset and the tip-calibration approach of MrBayes. We find that the estimated date for the origin of crown mammals is much older, ∼130-145 million years ago (Ma), than fossil and molecular clock data (∼80-90 Ma). Our results suggest that tip calibration may result in estimated dates that are more ancient than those obtained from other sources of data. This can be partially overcome by constraining the ages of internal nodes on the tree; however, when this was applied to our dataset, the estimated dates were still substantially more ancient than expected. We recommend that results obtained using tip calibration, and possibly morphological dating more generally, should be treated with caution. © 2016 The Author(s). Evolution published by Wiley Periodicals, Inc. on behalf of The Society for the Study of Evolution.

Theory of multiple quantum dot formation in strained-layer heteroepitaxy

DOE Office of Scientific and Technical Information (OSTI.GOV)

Du, Lin; Maroudas, Dimitrios, E-mail: maroudas@ecs.umass.edu

2016-07-11

We develop a theory for the experimentally observed formation of multiple quantum dots (QDs) in strained-layer heteroepitaxy based on surface morphological stability analysis of a coherently strained epitaxial thin film on a crystalline substrate. Using a fully nonlinear model of surface morphological evolution that accounts for a wetting potential contribution to the epitaxial film's free energy as well as surface diffusional anisotropy, we demonstrate the formation of multiple QD patterns in self-consistent dynamical simulations of the evolution of the epitaxial film surface perturbed from its planar state. The simulation predictions are supported by weakly nonlinear analysis of the epitaxial filmmore » surface morphological stability. We find that, in addition to the Stranski-Krastanow instability, long-wavelength perturbations from the planar film surface morphology can trigger a nonlinear instability, resulting in the splitting of a single QD into multiple QDs of smaller sizes, and predict the critical wavelength of the film surface perturbation for the onset of the nonlinear tip-splitting instability. The theory provides a fundamental interpretation for the observations of “QD pairs” or “double QDs” and other multiple QDs reported in experimental studies of epitaxial growth of semiconductor strained layers and sets the stage for precise engineering of tunable-size nanoscale surface features in strained-layer heteroepitaxy by exploiting film surface nonlinear, pattern forming phenomena.« less

Morphological change in machines accelerates the evolution of robust behavior

PubMed Central

Bongard, Josh

2011-01-01

Most animals exhibit significant neurological and morphological change throughout their lifetime. No robots to date, however, grow new morphological structure while behaving. This is due to technological limitations but also because it is unclear that morphological change provides a benefit to the acquisition of robust behavior in machines. Here I show that in evolving populations of simulated robots, if robots grow from anguilliform into legged robots during their lifetime in the early stages of evolution, and the anguilliform body plan is gradually lost during later stages of evolution, gaits are evolved for the final, legged form of the robot more rapidly—and the evolved gaits are more robust—compared to evolving populations of legged robots that do not transition through the anguilliform body plan. This suggests that morphological change, as well as the evolution of development, are two important processes that improve the automatic generation of robust behaviors for machines. It also provides an experimental platform for investigating the relationship between the evolution of development and robust behavior in biological organisms. PMID:21220304

Insights into the Morphological Instability of Bulk Heterojunction PTB7-Th/PCBM Solar Cells upon High-Temperature Aging

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hsieh, Yen-Ju; Huang, Yu-Ching; Liu, Wei-Shin

The impact of the morphological stability of the donor/acceptor mixture under thermal stress on the photovoltaic properties of bulk heterojunction (BHJ) solar cells based on the poly[4,8-bis(5-(2-ethylhexyl)thiophen-2-yl)benzo[1,2-b;4,5-b']-di-thiophene-2,6-diyl-alt-(4-(2 ethylhexyl)-3-fluorothieno[3,4-b]-thiophene)-2-carboxylate-2,6-diyl]/phenyl-C61-butyric acid methylester (PTB7-Th/PC61BM) blend is extensively investigated. Both optical microscopy and transmission electron microscopy micrographs show that long-term high-temperature aging stimulates the formation of microscale clusters, the size of which, however, is about 1 order of magnitude smaller than those observed in thermally annealed poly(3hexylthiophene)/PC61BM composite film. The multilength-scale evolution of the morphology of PTB7-Th/PC61BM film from the scattering profiles of grazing incidence small-angle and wide-angle X-ray scattering indicates the PC61BM moleculesmore » spatially confine the self-organization of polymer chains into large domains during cast drying and upon thermal activation. Moreover, some PC61BM molecules accumulate into ~30-40 nm clusters, the number of which increases with heating time. Therefore, the hole mobility in the active layer decays much more rapidly than the electron mobility, leading to unbalanced charge transport and degraded cell performance. Importantly, the three-component blend that is formed by replacing a small amount of PC61BM in the active layer with the bis-adduct of PC61BM (bis-P61M) exhibits robust morphology against thermal stress. Accordingly, the PTB7-Th/PC61BM:bis-PC61BM (8 wt %) device has an extremely stable power conversion efficiency.« less

Character evolution and missing (morphological) data across the core asterids (Gentianidae)

USDA-ARS?s Scientific Manuscript database

Character evolution and missing (morphological) data across Asteridae. Premise of the study: Our current understanding of flowering plant phylogeny provides an excellent framework for exploring various aspects of character evolution through comparative analyses. However, attempts to synthesize this ...

Whole planet coupling between climate, mantle, and core: Implications for rocky planet evolution

NASA Astrophysics Data System (ADS)

Foley, Bradford J.; Driscoll, Peter E.

2016-05-01

Earth's climate, mantle, and core interact over geologic time scales. Climate influences whether plate tectonics can take place on a planet, with cool climates being favorable for plate tectonics because they enhance stresses in the lithosphere, suppress plate boundary annealing, and promote hydration and weakening of the lithosphere. Plate tectonics plays a vital role in the long-term carbon cycle, which helps to maintain a temperate climate. Plate tectonics provides long-term cooling of the core, which is vital for generating a magnetic field, and the magnetic field is capable of shielding atmospheric volatiles from the solar wind. Coupling between climate, mantle, and core can potentially explain the divergent evolution of Earth and Venus. As Venus lies too close to the sun for liquid water to exist, there is no long-term carbon cycle and thus an extremely hot climate. Therefore, plate tectonics cannot operate and a long-lived core dynamo cannot be sustained due to insufficient core cooling. On planets within the habitable zone where liquid water is possible, a wide range of evolutionary scenarios can take place depending on initial atmospheric composition, bulk volatile content, or the timing of when plate tectonics initiates, among other factors. Many of these evolutionary trajectories would render the planet uninhabitable. However, there is still significant uncertainty over the nature of the coupling between climate, mantle, and core. Future work is needed to constrain potential evolutionary scenarios and the likelihood of an Earth-like evolution.

Elevated rates of morphological and functional diversification in reef-dwelling haemulid fishes.

PubMed

Price, Samantha A; Tavera, Jose J; Near, Thomas J; Wainwright, Peter C

2013-02-01

The relationship between habitat complexity and species richness is well established but comparatively little is known about the evolution of morphological diversity in complex habitats. Reefs are structurally complex, highly productive shallow-water marine ecosystems found in tropical (coral reefs) and temperate zones (rocky reefs) that harbor exceptional levels of biodiversity. We investigated whether reef habitats promote the evolution of morphological diversity in the feeding and locomotion systems of grunts (Haemulidae), a group of predominantly nocturnal fishes that live on both temperate and tropical reefs. Using phylogenetic comparative methods and statistical analyses that take into account uncertainty in phylogeny and the evolutionary history of reef living, we demonstrate that rates of morphological evolution are faster in reef-dwelling haemulids. The magnitude of this effect depends on the type of trait; on average, traits involved in the functional systems for prey capture and processing evolve twice as fast on reefs as locomotor traits. This result, along with the observation that haemulids do not exploit unique feeding niches on reefs, suggests that fine-scale trophic niche partitioning and character displacement may be driving higher rates of morphological evolution. Whatever the cause, there is growing evidence that reef habitats stimulate morphological and functional diversification in teleost fishes. © 2012 The Author(s). Evolution© 2012 The Society for the Study of Evolution.

TA [B] Predicting Microstructure-Creep Resistance Correlation in High Temperature Alloys over Multiple Time Scales

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tomar, Vikas

2017-03-06

DoE-NETL partnered with Purdue University to predict the creep and associated microstructure evolution of tungsten-based refractory alloys. Researchers use grain boundary (GB) diagrams, a new concept, to establish time-dependent creep resistance and associated microstructure evolution of grain boundaries/intergranular films GB/IGF controlled creep as a function of load, environment, and temperature. The goal was to conduct a systematic study that includes the development of a theoretical framework, multiscale modeling, and experimental validation using W-based body-centered-cubic alloys, doped/alloyed with one or two of the following elements: nickel, palladium, cobalt, iron, and copper—typical refractory alloys. Prior work has already established and validated amore » basic theory for W-based binary and ternary alloys; the study conducted under this project extended this proven work. Based on interface diagrams phase field models were developed to predict long term microstructural evolution. In order to validate the models nanoindentation creep data was used to elucidate the role played by the interface properties in predicting long term creep strength and microstructure evolution.« less

Erosion during extreme flood events dominates Holocene canyon evolution in northeast Iceland.

PubMed

Baynes, Edwin R C; Attal, Mikaël; Niedermann, Samuel; Kirstein, Linda A; Dugmore, Andrew J; Naylor, Mark

2015-02-24

Extreme flood events have the potential to cause catastrophic landscape change in short periods of time (10(0) to 10(3) h). However, their impacts are rarely considered in studies of long-term landscape evolution (>10(3) y), because the mechanisms of erosion during such floods are poorly constrained. Here we use topographic analysis and cosmogenic (3)He surface exposure dating of fluvially sculpted surfaces to determine the impact of extreme flood events within the Jökulsárgljúfur canyon (northeast Iceland) and to constrain the mechanisms of bedrock erosion during these events. Surface exposure ages allow identification of three periods of intense canyon cutting about 9 ka ago, 5 ka ago, and 2 ka ago during which multiple large knickpoints retreated large distances (>2 km). During these events, a threshold flow depth was exceeded, leading to the toppling and transportation of basalt lava columns. Despite continuing and comparatively large-scale (500 m(3)/s) discharge of sediment-rich glacial meltwater, there is no evidence for a transition to an abrasion-dominated erosion regime since the last erosive event because the vertical knickpoints have not diffused over time. We provide a model for the evolution of the Jökulsárgljúfur canyon through the reconstruction of the river profile and canyon morphology at different stages over the last 9 ka and highlight the dominant role played by extreme flood events in the shaping of this landscape during the Holocene.

Erosion during extreme flood events dominates Holocene canyon evolution in northeast Iceland

PubMed Central

Baynes, Edwin R. C.; Attal, Mikaël; Kirstein, Linda A.; Dugmore, Andrew J.; Naylor, Mark

2015-01-01

Extreme flood events have the potential to cause catastrophic landscape change in short periods of time (100 to 103 h). However, their impacts are rarely considered in studies of long-term landscape evolution (>103 y), because the mechanisms of erosion during such floods are poorly constrained. Here we use topographic analysis and cosmogenic 3He surface exposure dating of fluvially sculpted surfaces to determine the impact of extreme flood events within the Jökulsárgljúfur canyon (northeast Iceland) and to constrain the mechanisms of bedrock erosion during these events. Surface exposure ages allow identification of three periods of intense canyon cutting about 9 ka ago, 5 ka ago, and 2 ka ago during which multiple large knickpoints retreated large distances (>2 km). During these events, a threshold flow depth was exceeded, leading to the toppling and transportation of basalt lava columns. Despite continuing and comparatively large-scale (500 m3/s) discharge of sediment-rich glacial meltwater, there is no evidence for a transition to an abrasion-dominated erosion regime since the last erosive event because the vertical knickpoints have not diffused over time. We provide a model for the evolution of the Jökulsárgljúfur canyon through the reconstruction of the river profile and canyon morphology at different stages over the last 9 ka and highlight the dominant role played by extreme flood events in the shaping of this landscape during the Holocene. PMID:25675484

Island life in the Cretaceous - faunal composition, biogeography, evolution, and extinction of land-living vertebrates on the Late Cretaceous European archipelago

PubMed Central

Csiki-Sava, Zoltán; Buffetaut, Eric; Ősi, Attila; Pereda-Suberbiola, Xabier; Brusatte, Stephen L.

2015-01-01

Abstract The Late Cretaceous was a time of tremendous global change, as the final stages of the Age of Dinosaurs were shaped by climate and sea level fluctuations and witness to marked paleogeographic and faunal changes, before the end-Cretaceous bolide impact. The terrestrial fossil record of Late Cretaceous Europe is becoming increasingly better understood, based largely on intensive fieldwork over the past two decades, promising new insights into latest Cretaceous faunal evolution. We review the terrestrial Late Cretaceous record from Europe and discuss its importance for understanding the paleogeography, ecology, evolution, and extinction of land-dwelling vertebrates. We review the major Late Cretaceous faunas from Austria, Hungary, France, Spain, Portugal, and Romania, as well as more fragmentary records from elsewhere in Europe. We discuss the paleogeographic background and history of assembly of these faunas, and argue that they are comprised of an endemic ‘core’ supplemented with various immigration waves. These faunas lived on an island archipelago, and we describe how this insular setting led to ecological peculiarities such as low diversity, a preponderance of primitive taxa, and marked changes in morphology (particularly body size dwarfing). We conclude by discussing the importance of the European record in understanding the end-Cretaceous extinction and show that there is no clear evidence that dinosaurs or other groups were undergoing long-term declines in Europe prior to the bolide impact. PMID:25610343

Evolution of the pore structure during the early stages of the alkali-activation reaction: An in situ small-angle neutron scattering investigation

DOE PAGES

White, Claire E.; Olds, Daniel P.; Hartl, Monika; ...

2017-02-01

The long-term durability of cement-based materials is influenced by the pore structure and associated permeability at the sub-micrometre length scale. With the emergence of new types of sustainable cements in recent decades, there is a pressing need to be able to predict the durability of these new materials, and therefore nondestructive experimental techniques capable of characterizing the evolution of the pore structure are increasingly crucial for investigating cement durability. Here, small-angle neutron scattering is used to analyze the evolution of the pore structure in alkali-activated materials over the initial 24 h of reaction in order to assess the characteristic poremore » sizes that emerge during these short time scales. By using a unified fitting approach for data modeling, information on the pore size and surface roughness is obtained for a variety of precursor chemistries and morphologies (metakaolin- and slag-based pastes). Furthermore, the impact of activator chemistry is elucidatedviathe analysis of pastes synthesized using hydroxide- and silicate-based activators. It is found that the main aspect influencing the size of pores that are accessible using small-angle neutron scattering analysis (approximately 10–500 Å in diameter) is the availability of free silica in the activating solution, which leads to a more refined pore structure with smaller average pore size. Furthermore, as the reaction progresses the gel pores visible using this scattering technique are seen to increase in size.« less

A global perspective on Campanulaceae: Biogeographic, genomic, and floral evolution.

PubMed

Crowl, Andrew A; Miles, Nicholas W; Visger, Clayton J; Hansen, Kimberly; Ayers, Tina; Haberle, Rosemarie; Cellinese, Nico

2016-02-01

The Campanulaceae are a diverse clade of flowering plants encompassing more than 2300 species in myriad habitats from tropical rainforests to arctic tundra. A robust, multigene phylogeny, including all major lineages, is presented to provide a broad, evolutionary perspective of this cosmopolitan clade. We used a phylogenetic framework, in combination with divergence dating, ancestral range estimation, chromosome modeling, and morphological character reconstruction analyses to infer phylogenetic placement and timing of major biogeographic, genomic, and morphological changes in the history of the group and provide insights into the diversification of this clade across six continents. Ancestral range estimation supports an out-of-Africa diversification following the Cretaceous-Tertiary extinction event. Chromosomal modeling, with corroboration from the distribution of synonymous substitutions among gene duplicates, provides evidence for as many as 20 genome-wide duplication events before large radiations. Morphological reconstructions support the hypothesis that switches in floral symmetry and anther dehiscence were important in the evolution of secondary pollen presentation mechanisms. This study provides a broad, phylogenetic perspective on the evolution of the Campanulaceae clade. The remarkable habitat diversity and cosmopolitan distribution of this lineage appears to be the result of a complex history of genome duplications and numerous long-distance dispersal events. We failed to find evidence for an ancestral polyploidy event for this clade, and our analyses indicate an ancestral base number of nine for the group. This study will serve as a framework for future studies in diverse areas of research in Campanulaceae. © 2016 Botanical Society of America.

Creating self-formed meandering channels in laboratory flumes (Invited)

NASA Astrophysics Data System (ADS)

Braudrick, C. A.

2009-12-01

Our ability to construct predictive numerical models for meandering rivers is hampered by the inability to create meandering channels in the laboratory where individual variables can be isolated and controlled. Typically, experimental channels braid, straighten, or cease migration once they develop curvature. By using alfalfa sprouts to provide bank strength and fine sediment to attach point bars to the floodplain, we have successfully created and maintained meandering morphology in a laboratory flume. The 6.1 by 17 m flume has a floodplain slope of approximately 0.005 with a sandy bed and banks that scales as a gravel bed river. The alfalfa sprouts slow bank erosion allowing time for the bars to create new floodplain deposits. The sprouts also increase floodplain roughness, armor new bar deposits, and promote deposition of overbank sediment. The fine sediment, a lightweight plastic that scaled as sand, was crucial for blocking chutes formed between the bar and the floodplain, isolating cut-off channels from the main flow, and creating levees. During this 136-hour long experiment, the channel width stabilized as the channel migrated across the floodplain, and the curvature was recreated following cutoffs. Although the sinuosity (about 1.2) was low relative to meandering channels observed in the field, the spacing of bends was within the upper bounds of field examples. Subsequent experiments with higher bank strength had more limited chute development were able to generate a sinuosity of about 1.4. Scaling analysis indicates that the bank migration rates in the lower sinuosity experiment were approximately 10 times faster than migration rates in the field. A particular challenge in these experiments is maintaining a healthy alfalfa crop. After 15-20 hours of flood flows, the alfalfa begins to die off and new emergent bars need to be seeded. It then takes about 7 days for the alfalfa to grow to the size used in these experiments. The 15-20 hours scale to about one year of flood flows in the field. Therefore experiments that replicate the long-term evolution of meandering rivers would be prohibitively long with alfalfa. Future experiments should therefore focus on developing and testing models that to examine longer-term channel evolution.

Speculations on the origin and evolution of the Utopia-Elysium lowlands of Mars

NASA Technical Reports Server (NTRS)

Frey, Herbert V.; Schultz, Richard A.

1990-01-01

This paper proposes a qualitative model for the origin of the Utopia-Elysium northern lowlands on eastern Mars in terms of the long-term evolution of two large overlapping impact basins. The model, which is consistent with both the observed geologic constraints and more quantitative results obtained by numerical modeling of smaller (Orientale-size) impact basins, is shown to qualitatively account for the major topographic variation seen in the Utopia-Elysium region, including the overall 'lowness' of the area and localized depressions.

Seed morphology, germination phenology, and capacity to form a seed bank in six herbaceous layer apiaceae species of the eastern deciduous forest

Treesearch

Tracy S. Hawkins; Jerry M. Baskin; Carol C. Baskin

2007-01-01

We compared seed mass, seed morphology, and long-term germination phenology of three monocarpic (MI and three polycarpic (P) Apiaceae species of the herbaceous layer of the Eastern Deciduous Forest. Seeds (mericarps) of the six species differed considerably in mass, shape, and ornamentation. Mean seed masses were ranked Cryptotaenia canadensis (M)...

A unified framework for modelling sediment fate from source to sink and its interactions with reef systems over geological times.

PubMed

Salles, Tristan; Ding, Xuesong; Webster, Jody M; Vila-Concejo, Ana; Brocard, Gilles; Pall, Jodie

2018-03-27

Understanding the effects of climatic variability on sediment dynamics is hindered by limited ability of current models to simulate long-term evolution of sediment transfer from source to sink and associated morphological changes. We present a new approach based on a reduced-complexity model which computes over geological time: sediment transport from landmasses to coasts, reworking of marine sediments by longshore currents, and development of coral reef systems. Our framework links together the main sedimentary processes driving mixed siliciclastic-carbonate system dynamics. It offers a methodology for objective and quantitative sediment fate estimations over regional and millennial time-scales. A simulation of the Holocene evolution of the Great Barrier Reef shows: (1) how high sediment loads from catchments erosion prevented coral growth during the early transgression phase and favoured sediment gravity-flows in the deepest parts of the northern region basin floor (prior to 8 ka before present (BP)); (2) how the fine balance between climate, sea-level, and margin physiography enabled coral reefs to thrive under limited shelf sedimentation rates after ~6 ka BP; and, (3) how since 3 ka BP, with the decrease of accommodation space, reduced of vertical growth led to the lateral extension of reefs consistent with available observational data.

[Focal lymphoid hyperplasia (pseudolymphoma) of the terminal ileum in adults].

PubMed

Molas, G; Potet, F; Nogig, P

1985-01-01

We report two cases of focal lymphoid hyperplasia (FLH) of terminal ileum in adult patients. Both cases showed identical morphological findings. The first was discovered during cholecystectomy in a 75-year-old woman who complained mild non-specific abdominal discomfort. The second was manifested by right lower quadrant abdominal pain in a 32-year-old man. The surgical specimens revealed a thickened wall, a narrowed lumen and multiple ulcerations. The histologic features were small cell, well differentiated lymphocyte infiltration, with several follicles showing large germinal centers; regional lymph nodes revealed a conspicuous reactive size enlargement. Further clinical investigations revealed no other abnormalities. Clinical course showed benign evolution after 6 and 3 years of respective follow-up. FLH should be differentiated from terminal ileum inflammatory and infectious diseases. It can be differentiated from Crohn's disease by the absence of characteristic histological features; from Yersinia infection by the absence of significant rates of specific serum antibodies. Moreover, FLH can be differentiated from malignant lymphoma by the presence of follicles and enlarged germinal centers and by the long-term benign evolution. The nature of FLH in terminal ileum, as well as those of the stomach and colo-rectum is still to be determined. Several hypothesis are proposed: reactive, benign neoplastic, or prelymphomatous lesion?

The effect of giant flank collapses on magma pathways and location of volcanic vents

NASA Astrophysics Data System (ADS)

Maccaferri, Francesco; Richter, Nicole; Walter, Thomas

2017-04-01

Flank collapses have been identified at tall volcanoes and ocean islands worldwide. They are recurrent processes, significantly contributing to the morphological and structural evolution of volcanic edifices, and they often occur in interaction with magmatic activity. Moreover, it has been observed that the intrusion pathways and eruption's sites often differ before and after flank collapses. While it is understood that dyke intrusions might destabilise a volcano flank, and a moving flank might create the space needed for further intrusions, the effect of collapses on the magma pathways has been rarely addressed. Here we use a boundary element model for dyke propagation to study the effect of the stress redistribution due to a flank collapse on the location of eruptive vents. We use our model to simulate the path of magmatic intrusion after the collapse of the eastern flank of Fogo Volcano, Cabe Verde. We find that the competition between loading stress due to the volcanic edifice and unloading due to the collapse of a flank favours magmatic activity to cluster within the collapse scar, displaced with respect to the pre-collapse volcanic centre. Our results are compared with geomorphological observations at Fogo Island and are discussed in the general context of the long-term evolution intraplate volcanic ocean islands worldwide.

Heteroatom (P, B, or S) incorporated NiFe-based nanocubes as efficient electrocatalysts for the oxygen evolution reaction

DOE PAGES

Xuan, Cuijuan; Wang, Jie; Xia, Weiwei; ...

2018-03-21

Exploring low-cost and highly efficient electrocatalysts toward the oxygen evolution reaction (OER) is of significant importance, although facing great challenges for sustainable energy systems. In this study, amorphous NiFe-based porous nanocubes (Ni–Fe–O–P, Ni–Fe–O–B, and Ni–Fe–O–S) are successfully synthesized via simple and cost-effective one-step calcination of Ni–Fe based metal–organic frameworks (MOFs) and heteroatom containing molecules. The resulting three materials maintain a well-defined porous nanocube morphology with heteroatoms uniformly distributed in the structure. The unique porous structure can effectively provide more active sites and shorten the mass transport distance. Additionally, the introduction of P, B or S can tune the electronic structure,more » which is favorable for accelerating the charge transfer, and may lead to the formation of the higher average oxidative valence of Ni species during the OER process. Benefiting from the above desirable properties, all three materials exhibit excellent OER electrocatalytic activities and outstanding long-term stability in a home-made zinc air battery. Lastly, this work not only provides a general approach for the synthesis of highly efficient electrocatalysts based on earth-abundant elements but also highlights the potential prospects of MOFs in energy conversion and storage devices.« less

Heteroatom (P, B, or S) incorporated NiFe-based nanocubes as efficient electrocatalysts for the oxygen evolution reaction

DOE Office of Scientific and Technical Information (OSTI.GOV)

Xuan, Cuijuan; Wang, Jie; Xia, Weiwei

Exploring low-cost and highly efficient electrocatalysts toward the oxygen evolution reaction (OER) is of significant importance, although facing great challenges for sustainable energy systems. In this study, amorphous NiFe-based porous nanocubes (Ni–Fe–O–P, Ni–Fe–O–B, and Ni–Fe–O–S) are successfully synthesized via simple and cost-effective one-step calcination of Ni–Fe based metal–organic frameworks (MOFs) and heteroatom containing molecules. The resulting three materials maintain a well-defined porous nanocube morphology with heteroatoms uniformly distributed in the structure. The unique porous structure can effectively provide more active sites and shorten the mass transport distance. Additionally, the introduction of P, B or S can tune the electronic structure,more » which is favorable for accelerating the charge transfer, and may lead to the formation of the higher average oxidative valence of Ni species during the OER process. Benefiting from the above desirable properties, all three materials exhibit excellent OER electrocatalytic activities and outstanding long-term stability in a home-made zinc air battery. Lastly, this work not only provides a general approach for the synthesis of highly efficient electrocatalysts based on earth-abundant elements but also highlights the potential prospects of MOFs in energy conversion and storage devices.« less

Functional-morphological parallels of the hypothalamo-pituitary-adrenal system response reaction to long-term hypokinesia

NASA Technical Reports Server (NTRS)

Tsvetov, Y. P.; Razin, S. I.; Rychko, A. V.

1980-01-01

The effect of 2 and 4 week hypokinesia regimens on the hypothalamo-pituitary-adrenal system (HPAS) was investigated in 110 inbred mice. Progressive exhaustion and pathological reorganization of the HPAS morphofunctional structures was revealed. On the basis of established facts of interlineary and interspecies differences in the HPAS response, it is suggested that the animal body response reaction to the long term effects of hypokinesia depends largely on its HPAS resistance and the values of this system's defensive adaptation potential.

Long-term product consistency test of simulated 90-19/Nd HLW glass

NASA Astrophysics Data System (ADS)

Gan, X. Y.; Zhang, Z. T.; Yuan, W. Y.; Wang, L.; Bai, Y.; Ma, H.

2011-01-01

Chemical durability of 90-19/Nd glass, a simulated high-level waste (HLW) glass in contact with the groundwater was investigated with a long-term product consistency test (PCT). Generally, it is difficult to observe the long term property of HLW glass due to the slow corrosion rate in a mild condition. In order to overcome this problem, increased contacting surface ( S/ V = 6000 m -1) and elevated temperature (150 °C) were employed to accelerate the glass corrosion evolution. The micro-morphological characteristics of the glass surface and the secondary minerals formed after the glass alteration were analyzed by SEM-EDS and XRD, and concentrations of elements in the leaching solution were determined by ICP-AES. In our experiments, two types of minerals, which have great impact on glass dissolution, were found to form on 90-19/Nd HLW glass surface when it was subjected to a long-term leaching in the groundwater. One is Mg-Fe-rich phyllosilicates with honeycomb structure; the other is aluminosilicates (zeolites). Mg and Fe in the leaching solution participated in the formation of phyllosilicates. The main components of phyllosilicates in alteration products of 90-19/Nd HLW glass are nontronite (Na 0.3Fe 2Si 4O 10(OH) 2·4H 2O) and montmorillonite (Ca 0.2(Al,Mg) 2Si 4O 10(OH) 2·4H 2O), and those of aluminosilicates are mordenite ((Na 2,K 2,Ca)Al 2Si 10O 24·7H 2O)) and clinoptilolite ((Na,K,Ca) 5Al 6Si 30O 72·18H 2O). Minerals like Ca(Mg)SO 4 and CaCO 3 with low solubility limits are prone to form precipitant on the glass surface. Appearance of the phyllosilicates and aluminosilicates result in the dissolution rate of 90-19/Nd HLW glass resumed, which is increased by several times over the stable rate. As further dissolution of the glass, both B and Na in the glass were found to leach out in borax form.

Rapid variability of the arcsec-scale X-ray jets of SS 433

NASA Astrophysics Data System (ADS)

Migliari, S.; Fender, R. P.; Blundell, K. M.; Méndez, M.; van der Klis, M.

2005-04-01

We present X-ray images of all the available Chandra observations of the galactic jet source SS 433. We have studied the morphology of the X-ray images and inspected the evolution of the arcsec X-ray jets, recently found to be manifestations of in situ reheating of the relativistic gas downstream in the jets. The Chandra images reveal that the arcsec X-ray jets are not steady long-term structures; the structure varies, indicating that the reheating processes have no preference for a particular precession phase or distance from the binary core. Three observations made within about five days in 2001 May, and a 60-ks observation made in 2003 July, show that the variability of the jets can be very rapid, from time-scales of days to (possibly) hours. The three 2001 May images show two resolved knots in the east jet getting brighter one after the other, suggesting that a common phenomenon might be at the origin of the sequential reheatings of the knots. We discuss possible scenarios and propose a model to interpret these brightenings in terms of a propagating shock wave, revealing a second, faster outflow in the jet.

IMPAIRMENT IN SHORT-TERM BUT ENHANCED LONG-TERM SYNAPTIC POTENTIATION AND ERK ACTIVATION IN ADULT HIPPOCAMPAL AREA CA1 FOLLOWING DEVELOPMENTAL HYPOTHYROIDISM.

EPA Science Inventory

The EPA must evaluate the risk of exposure of the developing brain to chemicals with the potential to disrupt thyroid hormone homeostasis. The existing literature identifies morphological and neurochemical indices of severe neonatal hypothyroidism in the early postnatal period i...

Asynchronous evolution of physiology and morphology in Anolis lizards.

PubMed

Hertz, Paul E; Arima, Yuzo; Harrison, Alexis; Huey, Raymond B; Losos, Jonathan B; Glor, Richard E

2013-07-01

Species-rich adaptive radiations typically diversify along several distinct ecological axes, each characterized by morphological, physiological, and behavioral adaptations. We test here whether different types of adaptive traits share similar patterns of evolution within a radiation by investigating patterns of evolution of morphological traits associated with microhabitat specialization and of physiological traits associated with thermal biology in Anolis lizards. Previous studies of anoles suggest that close relatives share the same "structural niche" (i.e., use the same types of perches) and are similar in body size and shape, but live in different "climatic niches" (i.e., use habitats with different insolation and temperature profiles). Because morphology is closely tied to structural niche and field active body temperatures are tied to climatic niches in Anolis, we expected phylogenetic analyses to show that morphology is more evolutionarily conservative than thermal physiology. In support of this hypothesis, we find (1) that thermal biology exhibits more divergence among recently diverged Anolis taxa than does morphology; and (2) diversification of thermal biology among all species often follows diversification in morphology. These conclusions are remarkably consistent with predictions made by anole biologists in the 1960s and 1970s. © 2013 The Author(s). Evolution © 2013 The Society for the Study of Evolution.

Morphological Complexity as a Floral Signal: From Perception by Insect Pollinators to Co-Evolutionary Implications.

PubMed

Krishna, Shivani; Keasar, Tamar

2018-06-06

Morphologically complex flowers are characterized by bilateral symmetry, tube-like shapes, deep corolla tubes, fused petals, and/or poricidal anthers, all of which constrain the access of insect visitors to floral nectar and pollen rewards. Only a subset of potential pollinators, mainly large bees, learn to successfully forage on such flowers. Thus, complexity may comprise a morphological filter that restricts the range of visitors and thereby increases food intake for successful foragers. Such pollinator specialization, in turn, promotes flower constancy and reduces cross-species pollen transfer, providing fitness benefits to plants with complex flowers. Since visual signals associated with floral morphological complexity are generally honest (i.e., indicate food rewards), pollinators need to perceive and process them. Physiological studies show that bees detect distant flowers through long-wavelength sensitive photoreceptors. Bees effectively perceive complex shapes and learn the positions of contours based on their spatial frequencies. Complex flowers require long handling times by naive visitors, and become highly profitable only for experienced foragers. To explore possible pathways towards the evolution of floral complexity, we discuss cognitive mechanisms that potentially allow insects to persist on complex flowers despite low initial foraging gains, suggest experiments to test these mechanisms, and speculate on their adaptive value.

Coastal flooding hazard related to storms and coastal evolution in Valdelagrana spit (Cadiz Bay Natural Park, SW Spain)

NASA Astrophysics Data System (ADS)

Benavente, J.; Del Río, L.; Gracia, F. J.; Martínez-del-Pozo, J. A.

2006-06-01

Mapping of coastal inundation hazard related to storms requires the combination of multiple sources of information regarding meteorological, morphological and dynamic characteristics of both the area at risk and the studied phenomena. Variables such as beach slope, storm wave height or wind speed have traditionally been used, but detailed geomorphological features of the area as well as long-term shoreline evolution trends must also be taken into account in order to achieve more realistic results. This work presents an evaluation of storm flooding hazard in Valdelagrana spit and marshes (SW Spain), considering two types of storm that are characteristic of the area: a modal storm with 1 year of recurrence interval (maximum wave height of 3.3 m), and an extreme storm with 6-10 years of recurrence interval (maximum wave height of 10.6 m), both approaching the coast perpendicularly. After calculating theoretical storm surge elevation, a digital terrain model was made by adjusting topographic data to field work and detailed geomorphological analysis. A model of flooding extent was subsequently developed for each storm type, and then corrected according to the rates of shoreline change in the last decades, which were assessed by means of aerial photographs taking the dune toe as shoreline indicator. Results show that long-term coastline trend represents an important factor in the prediction of flooding extent, since shoreline retreat causes the deterioration of natural coastal defences as dune ridges, thus increasing coastal exposure to high-energy waves. This way, it has been stated that the lack of sedimentary supply plays an important role in spatial variability of inundation extent in Valdelagrana spit. Finally, a hazard map is presented, where calculated coastal retreat rates are employed in order to predict the areas that could be affected by future inundation events.

Long-Term Evolution of the Aerosol Debris Cloud Produced by the 2009 Impact on Jupiter

NASA Technical Reports Server (NTRS)

Sanchez-Lavega, A.; Orton, G. S.; Hueso, R.; Perez-Hoyos, S.; Fletcher, L. N.; Garcia-Melendo, E.; Gomez-Forrellad, J. M.; de Pater, I.; Wong, M.; Hammel. H. B.;

Modeling mutual feedback between users and recommender systems

NASA Astrophysics Data System (ADS)

Zeng, An; Yeung, Chi Ho; Medo, Matúš; Zhang, Yi-Cheng

2015-07-01

Recommender systems daily influence our decisions on the Internet. While considerable attention has been given to issues such as recommendation accuracy and user privacy, the long-term mutual feedback between a recommender system and the decisions of its users has been neglected so far. We propose here a model of network evolution which allows us to study the complex dynamics induced by this feedback, including the hysteresis effect which is typical for systems with non-linear dynamics. Despite the popular belief that recommendation helps users to discover new things, we find that the long-term use of recommendation can contribute to the rise of extremely popular items and thus ultimately narrow the user choice. These results are supported by measurements of the time evolution of item popularity inequality in real systems. We show that this adverse effect of recommendation can be tamed by sacrificing part of short-term recommendation accuracy.

Lessons Learned from the Evolution of an Academic Community Partnership: Creating "Patient Voices".

PubMed

Chambers, Meghan K; Ireland, Anna; D'Aniello, Rona; Lipnicki, Stephanie; Glick, Myron; Tumiel-Berhalter, Laurene

2015-01-01

Long-term partners received federal funding to develop the Patient Voices Network, a partnership of safety-net family practices and their patients to develop health improvement strategies. The scope and structure of the newly funded grant presented unexpected challenges that threatened the future of the partnership.Purpose of Article: To present a case study of the evolution of an existing partnership and offer lessons learned along with recommendations for future partnerships. Federal funding formalized the partnership in a way that required looking at it through a new lens. Leadership, programmatic, personnel, and financial challenges emerged. Short-term and long-term strategies were applied to address evolving needs. This case study demonstrates how federal funding raises the bar for academic-community partnerships and how challenges can be worked through, particularly if the partnership embraces the key principles of community-based participatory research (CBPR). Recommendations have been applied successfully to future initiatives.

Bluff evolution along coastal drumlins: Boston Harbor Islands, Massachusetts

USGS Publications Warehouse

Himmelstoss, E.A.; FitzGerald, D.M.; Rosen, P.S.; Allen, J.R.

2006-01-01

A series of partially drowned drumlins forms the backbone of the inner islands within Boston Harbor. The shoreline of these rounded glacial deposits is composed of actively retreating bluffs formed by continual wave attack. Comparisons of bluffs reveal variability in their height and lateral extent, as well as in the dominant mechanism causing their retreat. Two processes are responsible for bluff erosion and yield distinct bluff morphologies: (1) wave attack undercuts the bluff and causes episodic slumping, yielding planar bluff slopes, and (2) subaerial processes such as rainfall create irregular slopes characterized by rills and gullies. We propose a model of drumlin bluff evolution that is based on processes of erosion and physical characteristics such as bluff height, slope morphology, and the orientation of the bluff with respect to the long axis of the drumlin and its topographic crest. The four phases of drumlin bluff evolution consist of (1) initial formation of bluff, with retreat dominated by wave notching and slumping processes; (2) rill and gully development as bluff heights exceed 10 m and slumped sediment at bluff base inhibits wave attack; (3) return of wave notching and slumping as bluff heights decrease; and (4) final development of boulder retreat lag as last remnants of drumlin are eroded by wave action. These phases capture the important physical processes of drumlin evolution in Boston Harbor and could apply to other eroding coastal drumlin deposits.

The stability of the international oil trade network from short-term and long-term perspectives

NASA Astrophysics Data System (ADS)

Sun, Qingru; Gao, Xiangyun; Zhong, Weiqiong; Liu, Nairong

2017-09-01

To examine the stability of the international oil trade network and explore the influence of countries and trade relationships on the trade stability, we construct weighted and unweighted international oil trade networks based on complex network theory using oil trading data between countries from 1996 to 2014. We analyze the stability of international oil trade network (IOTN) from short-term and long-term aspects. From the short-term perspective, we find that the trade volumes play an important role on the stability. Moreover, the weighted IOTN is stable; however, the unweighted networks can better reflect the actual evolution of IOTN. From the long-term perspective, we identify trade relationships that are maintained during the whole sample period to reveal the situation of the whole international oil trade. We provide a way to quantitatively measure the stability of complex network from short-term and long-term perspectives, which can be applied to measure and analyze trade stability of other goods or services.

Coastal Foredune Evolution, Part 2: Modeling Approaches for Meso-Scale Morphologic Evolution

DTIC Science & Technology

2017-03-01

ERDC/CHL CHETN-II-57 March 2017 Approved for public release; distribution is unlimited. Coastal Foredune Evolution, Part 2: Modeling Approaches...for Meso-Scale Morphologic Evolution by Margaret L. Palmsten1, Katherine L. Brodie2, and Nicholas J. Spore2 PURPOSE: This Coastal and Hydraulics...Engineering Technical Note (CHETN) is the second of two CHETNs focused on improving technologies to forecast coastal foredune evolution. Part 1

Spectral evolution of weakly nonlinear random waves: kinetic description vs direct numerical simulations

NASA Astrophysics Data System (ADS)

Annenkov, Sergei; Shrira, Victor

2016-04-01

We study numerically the long-term evolution of water wave spectra without wind forcing, using three different models, aiming at understanding the role of different sets of assumptions. The first model is the classical Hasselmann kinetic equation (KE). We employ the WRT code kindly provided by G. van Vledder. Two other models are new. As the second model, we use the generalised kinetic equation (gKE), derived without the assumption of quasi-stationarity. Thus, unlike the KE, the gKE is valid in the cases when a wave spectrum is changing rapidly (e.g. at the initial stage of evolution of a narrow spectrum). However, the gKE employs the same statistical closure as the KE. The third model is based on the Zakharov integrodifferential equation for water waves and does not depend on any statistical assumptions. Since the Zakharov equation plays the role of the primitive equation of the theory of wave turbulence, we refer to this model as direct numerical simulation of spectral evolution (DNS-ZE). For initial conditions, we choose two narrow-banded spectra with the same frequency distribution (a JONSWAP spectrum with high peakedness γ = 6) and different degrees of directionality. These spectra are from the set of observations collected in a directional wave tank by Onorato et al (2009). Spectrum A is very narrow in angle (corresponding to N = 840 in the cosN directional model). Spectrum B is initially wider in angle (corresponds to N = 24). Short-term evolution of both spectra (O(102) wave periods) has been studied numerically by Xiao et al (2013) using two other approaches (broad-band modified nonlinear Schrödinger equation and direct numerical simulation based on the high-order spectral method). We use these results to verify the initial stage of our DNS-ZE simulations. However, the advantage of the DNS-ZE method is that it allows to study long-term spectral evolution (up to O(104) periods), which was previously possible only with the KE. In the short-term evolution, we find a good agreement between our DNS-ZE results and simulations by Xiao et al (2013), both for the evolution of frequency spectra and for the directional spreading. In the long term, all three approaches demonstrate very close evolution of integral characteristics of spectra, approaching for large time the theoretical asymptotes of the self-similar stage of evolution. However, the detailed comparison of the spectral evolution shows certain notable differences. Both kinetic equations give virtually identical evolution of spectrum B, but in the case of initially nearly one-dimensional spectrum A the KE overestimates the amplitude of the spectral peak. Meanwhile, the DNS-ZE results show considerably wider spectra with less pronounced peak. There is a striking difference for the rate of spectral broadening, which is much larger for the gKE and especially for the KE, than for the DNS-ZE. We show that the rates of change of the spectra obtained with the DNS-ZE are proportional to the fourth power of nonlinearity, corresponding to the dynamical timescale of evolution, rather than the statistical timescale of both kinetic equations.

Is Earth coming out of the recent ice house age in the long-term? - constraints from probable mantle CO2-degassing reconstructions

NASA Astrophysics Data System (ADS)

Hartmann, Jens; Li, Gaojun; West, A. Joshua

2017-04-01

Enhanced partial melting of mantle material probably started when the subduction motor started around 3.2 Ga ago as evidenced by the formation history of the continental crust. Carbon is degassing due partial melting as it is an incompatible element. Therefore, mantle carbon degassing rates would change with time proportionally to the reservoir mantle concentration evolution and the ocean crust production rate, causing a distinct CO2-degassing rate change with time. The evolution of the mantle degassing rate has some implications for the reconstruction of the carbon cycle and therefore climate and Earth surface processes rates, as CO2-degassing rates are used to constrain or to balance the atmosphere-ocean-crust carbon cycle system. It will be shown that compilations of CO2-degassing from relevant geological sources are probably exceeding the established CO2-sink terrestrial weathering, which is often used to constrain long-term mantle degassing rates to close the carbon cycle on geological time scales. In addition, the scenarios for the degassing dynamics from the mantle sources suggest that the mantle is depleting its carbon content since 3 Ga. This has further implications for the long-term CO2-sink weathering. Results will be compared with geochemical proxies for weathering and weathering intensity dynamics, and will be set in context with snow ball Earth events and long-term emplacement dynamics of mafic areas as Large Igneous Provinces. Decreasing mantle degassing rates since about 2 Ga suggest a constraint for the evolution of the carbon cycle and recycling potential of the amount of subducted carbon. If the given scenarios hold further investigation, the contribution of mantle degassing to climate forcing (directly and via recycling) will decrease further.

Senescence in the wild: Insights from a long-term study on Seychelles warblers.

PubMed

Hammers, Martijn; Kingma, Sjouke A; Bebbington, Kat; van de Crommenacker, Janske; Spurgin, Lewis G; Richardson, David S; Burke, Terry; Dugdale, Hannah L; Komdeur, Jan

2015-11-01

Senescence--the progressive age-dependent decline in performance--occurs in most organisms. There is considerable variation in the onset and rate of senescence between and within species. Yet the causes of this variation are still poorly understood, despite being central to understanding the evolution of senescence. Long-term longitudinal studies on wild animals are extremely well-suited to studying the impact of environmental and individual characteristics (and the interaction between the two) on senescence, and can help us to understand the mechanisms that shape the evolution of senescence. In this review, we summarize and discuss the insights gained from our comprehensive long-term individual-based study of the Seychelles warbler (Acrocephalus sechellensis). This species provides an excellent model system in which to investigate the evolution of senescence in the wild. We found that Seychelles warblers show senescent declines in survival and reproduction, and discuss how individual characteristics (body condition, body size) and environmental effects (low- versus high-quality environments) may affect the onset and rate of senescence. Further, we highlight the evidence for trade-offs between early-life investment and senescence. We describe how key cellular and physiological processes (oxidative stress and telomere shortening) underpinning senescence are affected by individual and environmental characteristics in the Seychelles warbler (e.g. food availability, reproductive investment, disease) and we discuss how such physiological variation may mediate the relationship between environmental characteristics and senescence. Based on our work using Seychelles warblers as a model system, we show how insights from long-term studies of wild animals may help unravel the causes of the remarkable variation in senescence observed in natural systems, and highlight areas for promising future research.

Sensitivity analysis of a variability in rock thermal conductivity concerning implications on the thermal evolution of the Brazilian South Atlantic passive continental margin

NASA Astrophysics Data System (ADS)

Stippich, Christian; Krob, Florian; Glasmacher, Ulrich Anton; Hackspacher, Peter Christian

2017-04-01

The aim of the research is to quantify the long-term evolution of the western South Atlantic passive continental margin (SAPCM) in SE-Brazil. Excellent onshore outcrop conditions and extensive pre-rift to post-rift archives between São Paulo and Laguna allow a high precision quantification of exhumation, and rock uplift rates, influencing physical parameters, long-term acting forces, and process-response systems. The research integrates published (Karl et al., 2013) and partly published thermochronological data from Brazil, and test lately published new concepts on causes of long-term landscape and lithospheric evolution in southern Brazil. Six distinct lithospheric blocks (Laguna, Florianópolis, Curitiba, Ilha Comprida, Peruibe and Santos), which are separated by fracture zones (Karl et al., 2013) are characterized by individual thermochronological age spectra. Furthermore, the thermal evolution derived by numerical modeling indicates variable post-rift exhumation histories of these blocks. In this context, we will provide information on the causes for the complex exhumation history of the Florianópolis, and adjacent blocks. Following up on our latest publication (Braun et al., 2016) regarding the effect of variability in rock thermal conductivity on exhumation rate estimates we performed a sensitivity analysis to quantify the effect of a differentiated lithospheric crust on the thermal evolution of the Florianópolis block versus exhumation rates estimated from modelling a lithospheric uniform crustal block. The long-term landscape evolution models with process rates were computed with the software code PECUBE (Braun, 2003; Braun et al., 2012). Testing model solutions obtained for a multidimensional parameter space against the real thermochronological and geomorphological data set, the most likely combinations of parameters, values, and rates can be constrained. References Braun, J., 2003. Pecube: A new finite element code to solve the 3D heat transport equation including the effects of a time-varying, finite amplitude surface topography. Computers and Geosciences, v.29, pp.787-794. Braun, J., Stippich, C., Glasmacher, U. A., 2016. The effect of variability in rock thermal conductivity on exhumation rate estimates from thermochronological data. Tectonophysics, v.690, pp.288-297 Braun, J., van der Beek, P., Valla, P., Robert, X., Herman, F., Goltzbacj, C., Pedersen, V., Perry, C., Simon-Labric, T., Prigent, C., 2012. Quantifying rates of landscape evolution and tectonic processes by thermochronology and numerical modeling of crustal heat transport using PECUBE. Tectonophysics, v.524-525, pp.1-28. Karl, M., Glasmacher, U.A., Kollenz, S., Franco-Magalhaes, A.O.B., Stockli, D.F., Hackspacher, P., 2013. Evolution of the South Atlantic passive continental margin in southern Brazil derived from zircon and apatite (U-Th-Sm)/He and fission-track data. Tectonophysics, Volume 604, Pages 224-244.

Modelling rate distributions using character compatibility: implications for morphological evolution among fossil invertebrates.

PubMed

Wagner, Peter J

2012-02-23

Rate distributions are important considerations when testing hypotheses about morphological evolution or phylogeny. They also have implications about general processes underlying character evolution. Molecular systematists often assume that rates are Poisson processes with gamma distributions. However, morphological change is the product of multiple probabilistic processes and should theoretically be affected by hierarchical integration of characters. Both factors predict lognormal rate distributions. Here, a simple inverse modelling approach assesses the best single-rate, gamma and lognormal models given observed character compatibility for 115 invertebrate groups. Tests reject the single-rate model for nearly all cases. Moreover, the lognormal outperforms the gamma for character change rates and (especially) state derivation rates. The latter in particular is consistent with integration affecting morphological character evolution.

Morphological diversity and evolution of egg and clutch structure in amphibians

USGS Publications Warehouse

Altig, Ronald; McDiarmid, Roy W.

2007-01-01

The first part of this synthesis summarizes the morphology of the jelly layers surrounding an amphibian ovum. We propose a standard terminology and discuss the evolution of jelly layers. The second part reviews the morphological diversity and arrangement of deposited eggs?the ovipositional mode; we recognize 5 morphological classes including 14 modes. We discuss some of the oviductal, ovipositional, and postovipositional events that contribute to these morphologies. We have incorporated data from taxa from throughout the world but recognize that other types will be discovered that may modify understanding of these modes. Finally, we discuss the evolutionary context of the diversity of clutch structure and present a first estimate of its evolution.

Biological-Physical Feedbacks Determine Coastal Environmental Response to Climate Change

NASA Astrophysics Data System (ADS)

Moore, L. J.; Duran Vinent, O.; Walters, D.; Fagherazzi, S.; Mariotti, G.; Young, D.; Wolner, C. V.

2012-12-01

As low-lying coastal landforms, transitional between marine and terrestrial realms, barrier islands are especially sensitive to changing environmental conditions. Interactions among biological and physical processes appear to play a critical role in determining how these landscapes will evolve in the future as sea level rises, storm intensity increases and plant species composition changes. Within a new conceptual framework, barrier islands tend to exist in one of two primary states. "Low" islands have little relief above sea level and are dominated by external processes, responding quickly on short time scales to changes in forcing (e.g., storms, sea level rise, etc.), migrating rapidly and generally being low in ecological diversity and productivity. In contrast, "high" islands are less vulnerable to storms, tend to be dominated by internal processes (e.g., sand trapping by vegetation), require long time periods to respond to changes in forcing, migrate slowly (if at all) and host a range of plant species and morphological environments including shrubs, small trees and vegetated secondary and tertiary dunes with intervening swales. The continued existence of barrier island landforms will depend on the degree to which islands can maintain elevation above sea level while also responding to changes in forcing by migrating landward. A long-term morphological-behavior model exploring coupled barrier-marsh evolution and a new ecomorphodynamic model representing the formation/recovery of dunes as a function of storms, shed light on the role of interactions among biological and physical processes on barrier island response to climate change. Results suggest that connections between the marsh and barrier realms, which are mediated by biological processes in the marsh environment, are highly sensitive to factors such as sea level rise rate, antecedent morphology and marsh composition. Results also suggest that feedbacks between sediment transport and vegetation involved in dune building may allow small, gradual changes in storms to cause abrupt, nonlinear transitions from the high to low island state.

Evolution of individual versus social learning on social networks

PubMed Central

Tamura, Kohei; Kobayashi, Yutaka; Ihara, Yasuo

2015-01-01

A number of studies have investigated the roles played by individual and social learning in cultural phenomena and the relative advantages of the two learning strategies in variable environments. Because social learning involves the acquisition of behaviours from others, its utility depends on the availability of ‘cultural models’ exhibiting adaptive behaviours. This indicates that social networks play an essential role in the evolution of learning. However, possible effects of social structure on the evolution of learning have not been fully explored. Here, we develop a mathematical model to explore the evolutionary dynamics of learning strategies on social networks. We first derive the condition under which social learners (SLs) are selectively favoured over individual learners in a broad range of social network. We then obtain an analytical approximation of the long-term average frequency of SLs in homogeneous networks, from which we specify the condition, in terms of three relatedness measures, for social structure to facilitate the long-term evolution of social learning. Finally, we evaluate our approximation by Monte Carlo simulations in complete graphs, regular random graphs and scale-free networks. We formally show that whether social structure favours the evolution of social learning is determined by the relative magnitudes of two effects of social structure: localization in competition, by which competition between learning strategies is evaded, and localization in cultural transmission, which slows down the spread of adaptive traits. In addition, our estimates of the relatedness measures suggest that social structure disfavours the evolution of social learning when selection is weak. PMID:25631568

Evolution of individual versus social learning on social networks.

PubMed

Tamura, Kohei; Kobayashi, Yutaka; Ihara, Yasuo

2015-03-06

A number of studies have investigated the roles played by individual and social learning in cultural phenomena and the relative advantages of the two learning strategies in variable environments. Because social learning involves the acquisition of behaviours from others, its utility depends on the availability of 'cultural models' exhibiting adaptive behaviours. This indicates that social networks play an essential role in the evolution of learning. However, possible effects of social structure on the evolution of learning have not been fully explored. Here, we develop a mathematical model to explore the evolutionary dynamics of learning strategies on social networks. We first derive the condition under which social learners (SLs) are selectively favoured over individual learners in a broad range of social network. We then obtain an analytical approximation of the long-term average frequency of SLs in homogeneous networks, from which we specify the condition, in terms of three relatedness measures, for social structure to facilitate the long-term evolution of social learning. Finally, we evaluate our approximation by Monte Carlo simulations in complete graphs, regular random graphs and scale-free networks. We formally show that whether social structure favours the evolution of social learning is determined by the relative magnitudes of two effects of social structure: localization in competition, by which competition between learning strategies is evaded, and localization in cultural transmission, which slows down the spread of adaptive traits. In addition, our estimates of the relatedness measures suggest that social structure disfavours the evolution of social learning when selection is weak. © 2015 The Author(s) Published by the Royal Society. All rights reserved.

A spruce gene map infers ancient plant genome reshuffling and subsequent slow evolution in the gymnosperm lineage leading to extant conifers

PubMed Central

2012-01-01

Background Seed plants are composed of angiosperms and gymnosperms, which diverged from each other around 300 million years ago. While much light has been shed on the mechanisms and rate of genome evolution in flowering plants, such knowledge remains conspicuously meagre for the gymnosperms. Conifers are key representatives of gymnosperms and the sheer size of their genomes represents a significant challenge for characterization, sequencing and assembling. Results To gain insight into the macro-organisation and long-term evolution of the conifer genome, we developed a genetic map involving 1,801 spruce genes. We designed a statistical approach based on kernel density estimation to analyse gene density and identified seven gene-rich isochors. Groups of co-localizing genes were also found that were transcriptionally co-regulated, indicative of functional clusters. Phylogenetic analyses of 157 gene families for which at least two duplicates were mapped on the spruce genome indicated that ancient gene duplicates shared by angiosperms and gymnosperms outnumbered conifer-specific duplicates by a ratio of eight to one. Ancient duplicates were much more translocated within and among spruce chromosomes than conifer-specific duplicates, which were mostly organised in tandem arrays. Both high synteny and collinearity were also observed between the genomes of spruce and pine, two conifers that diverged more than 100 million years ago. Conclusions Taken together, these results indicate that much genomic evolution has occurred in the seed plant lineage before the split between gymnosperms and angiosperms, and that the pace of evolution of the genome macro-structure has been much slower in the gymnosperm lineage leading to extent conifers than that seen for the same period of time in flowering plants. This trend is largely congruent with the contrasted rates of diversification and morphological evolution observed between these two groups of seed plants. PMID:23102090

A spruce gene map infers ancient plant genome reshuffling and subsequent slow evolution in the gymnosperm lineage leading to extant conifers.

PubMed

Pavy, Nathalie; Pelgas, Betty; Laroche, Jérôme; Rigault, Philippe; Isabel, Nathalie; Bousquet, Jean

2012-10-26

Seed plants are composed of angiosperms and gymnosperms, which diverged from each other around 300 million years ago. While much light has been shed on the mechanisms and rate of genome evolution in flowering plants, such knowledge remains conspicuously meagre for the gymnosperms. Conifers are key representatives of gymnosperms and the sheer size of their genomes represents a significant challenge for characterization, sequencing and assembling. To gain insight into the macro-organisation and long-term evolution of the conifer genome, we developed a genetic map involving 1,801 spruce genes. We designed a statistical approach based on kernel density estimation to analyse gene density and identified seven gene-rich isochors. Groups of co-localizing genes were also found that were transcriptionally co-regulated, indicative of functional clusters. Phylogenetic analyses of 157 gene families for which at least two duplicates were mapped on the spruce genome indicated that ancient gene duplicates shared by angiosperms and gymnosperms outnumbered conifer-specific duplicates by a ratio of eight to one. Ancient duplicates were much more translocated within and among spruce chromosomes than conifer-specific duplicates, which were mostly organised in tandem arrays. Both high synteny and collinearity were also observed between the genomes of spruce and pine, two conifers that diverged more than 100 million years ago. Taken together, these results indicate that much genomic evolution has occurred in the seed plant lineage before the split between gymnosperms and angiosperms, and that the pace of evolution of the genome macro-structure has been much slower in the gymnosperm lineage leading to extent conifers than that seen for the same period of time in flowering plants. This trend is largely congruent with the contrasted rates of diversification and morphological evolution observed between these two groups of seed plants.

Mapping the structure of animal behavior

NASA Astrophysics Data System (ADS)

Berman, Gordon; Choi, Daniel; Bialek, William; Shaevitz, Joshua

2014-03-01

Most animals possess the ability to actuate a vast diversity of movements, ostensibly constrained only by morphology and physics. In practice, however, a frequent assumption in behavioral science is that most of an animal's activities can be described in terms of a small set of stereotyped motifs. Here we introduce a method for mapping the behavioral space of organisms, relying only upon the underlying structure of postural movement data to organize and classify behaviors. Applying our method to movies of size closely-related species of freely-behaving fruit flies, we find a wide variety of non-stereotyped and stereo-typed behaviors, spanning a wide range of time scales. We observe subtle behavioral differences between these species, identifying the some of the effects of phylogenic history on behavior. Moreover, we find that the transitions between the observed behaviors display a hierarchical syntax, with similar behaviors likely to transition between each other, but with a long time scale of memory. These results suggest potential mechanisms for the evolution of behavior and for the neural control of movements.

Class III dento-skeletal anomalies: rotational growth and treatment timing.

PubMed

Mosca, G; Grippaudo, C; Marchionni, P; Deli, R

2006-03-01

The interception of a Class III malocclusion requires a long-term growth prediction in order to estimate the subject's evolution from the prepubertal phase to adulthood. The aim of this retrospective longitudinal study was to highlight the differences in facial morphology in relation to the direction of mandibular growth in a sample of subjects with Class III skeletal anomalies divided on the basis of their Petrovic's auxological categories and rotational types. The study involved 20 patients (11 females and 9 males) who started therapy before reaching their pubertal peak and were followed up for a mean of 4.3 years (range: 3.9-5.5 years). Despite the small sample size, the definition of the rotational type of growth was the main diagnostic element for setting the correct individualised therapy. We therefore believe that the observation of a larger sample would reinforce the diagnostic-therapeutic validity of Petrovic's auxological categories, allow an evaluation off all rotational types, and improve the statistical significance of the results obtained.

Phenex: ontological annotation of phenotypic diversity.

PubMed

Balhoff, James P; Dahdul, Wasila M; Kothari, Cartik R; Lapp, Hilmar; Lundberg, John G; Mabee, Paula; Midford, Peter E; Westerfield, Monte; Vision, Todd J

2010-05-05

Phenotypic differences among species have long been systematically itemized and described by biologists in the process of investigating phylogenetic relationships and trait evolution. Traditionally, these descriptions have been expressed in natural language within the context of individual journal publications or monographs. As such, this rich store of phenotype data has been largely unavailable for statistical and computational comparisons across studies or integration with other biological knowledge. Here we describe Phenex, a platform-independent desktop application designed to facilitate efficient and consistent annotation of phenotypic similarities and differences using Entity-Quality syntax, drawing on terms from community ontologies for anatomical entities, phenotypic qualities, and taxonomic names. Phenex can be configured to load only those ontologies pertinent to a taxonomic group of interest. The graphical user interface was optimized for evolutionary biologists accustomed to working with lists of taxa, characters, character states, and character-by-taxon matrices. Annotation of phenotypic data using ontologies and globally unique taxonomic identifiers will allow biologists to integrate phenotypic data from different organisms and studies, leveraging decades of work in systematics and comparative morphology.

Sediment heterogeneity and mobility in the morphodynamic modelling of gravel-bed braided rivers

NASA Astrophysics Data System (ADS)

Singh, Umesh; Crosato, Alessandra; Giri, Sanjay; Hicks, Murray

2017-06-01

The effects of sediment heterogeneity and sediment mobility on the morphology of braided rivers are still poorly studied, especially when the partial sediment mobility occurs. Nevertheless, increasing the bed sediment heterogeneity by coarse sediment supply is becoming a common practice in river restoration projects and habitat improvement all over the world. This research provides a step forward in the identification of the effects of sediment sorting on the evolution of sediment bars and braiding geometry of gravel-bed rivers. A two-dimensional morphodynamic model was used to simulate the long-term developments of a hypothetical braided system with discharge regime and morphodynamic parameters derived from the Waimakariri River, New Zealand. Several scenarios, differing in bed sediment heterogeneity and sediment mobility, were considered. The results agree with the tendencies already identified in linear analyses and experimental studies, showing that a larger sediment heterogeneity increases the braiding indes and reduces the bars length and height. The analyses allowed identifying the applicability limits of uniform sediment and variable discharge modelling approaches.

Enhancing the Rehabilitation of Persons with Long-Term Mental Illness. [Proceedings of the] Institute on Rehabilitation Issues (15th, Tampa, Florida, December 1988). Report from the Study Group.

ERIC Educational Resources Information Center

Cato, Carol; And Others

This report from a study group on long-term mental illness (LTMI) examines three components of the vocational rehabilitation process (the client, the counselor, and the programs) and the systems through which the three components interact. The first chapter discusses the history and evolution of the vocational rehabilitation (VR) and mental health…

Coastline evolution of Portuguese low-lying sandy coast in the last 50 years: an integrated approach

NASA Astrophysics Data System (ADS)

Ponte Lira, Cristina; Nobre Silva, Ana; Taborda, Rui; Freire de Andrade, Cesar

2016-06-01

Regional/national-scale information on coastline rates of change and trends is extremely valuable, but these studies are scarce. A widely accepted standardized methodology for analysing long-term coastline change has been difficult to achieve, but it is essential to conduct an integrated and holistic approach to coastline evolution and hence support coastal management actions. Additionally, databases providing knowledge on coastline evolution are of key importance to support both coastal management experts and users.The main objective of this work is to present the first systematic, national-scale and consistent long-term coastline evolution data of Portuguese mainland low-lying sandy coasts.The methodology used quantifies coastline evolution using a unique and robust coastline indicator (the foredune toe), which is independent of short-term changes.The dataset presented comprises (1) two polyline sets, mapping the 1958 and 2010 sandy beach-dune system coastline, both optimized for working at 1 : 50 000 scale or smaller; (2) one polyline set representing long-term change rates between 1958 and 2010, each estimated at 250 m; and (3) a table with minimum, maximum and mean of evolution rates for sandy beach-dune system coastline. All science data produced here are openly accessible at https://doi.pangaea.de/10.1594/PANGAEA.859136 and can be used in other studies.Results show beach erosion as the dominant trend, with a mean change rate of -0.24 ± 0.01 m year-1 for all mainland Portuguese beach-dune systems. Although erosion is dominant, this evolution is variable in signal and magnitude in different coastal sediment cells and also within each cell. The most relevant beach erosion issues were found in the coastal stretches of Espinho-Torreira and Costa Nova-Praia de Mira, Cova da Gala-Leirosa, and Cova do Vapor-Costa da Caparica. The coastal segments Minho River-Nazaré and Costa da Caparica adjacent to the coast exhibit a history of major human interventions interfering with the coastal system, many of which originated and maintained a sediment deficit. In contrast, the coastal segments Troia-Sines and Sines-Cape S. Vicente have experienced less intervention and show stable or moderate accretion behaviour.

Developmental ethanol exposure alters the morphology of mouse prefrontal neurons in a layer-specific manner.

PubMed

Louth, Emma L; Luctkar, Hanna D; Heney, Kayla A; Bailey, Craig D C

2018-01-01

Chronic developmental exposure to ethanol can lead to a wide variety of teratogenic effects, which in humans are known as fetal alcohol spectrum disorders (FASD). Individuals affected by FASD may exhibit persistent impairments to cognitive functions such as learning, memory, and attention, which are highly dependent on medial prefrontal cortex (mPFC) circuitry. The objective of this study was to determine long-term effects of chronic developmental ethanol exposure on mPFC neuron morphology, in order to better-understand potential neuronal mechanisms underlying cognitive impairments associated with FASD. C57BL/6-strain mice were exposed to ethanol or an isocaloric/isovolumetric amount of sucrose (control) via oral gavage, administered both to the dam from gestational day 10-18 and directly to pups from postnatal day 4-14. Brains from male mice were collected at postnatal day 90 and neurons were stained using a modified Golgi-Cox method. Pyramidal neurons within layers II/III, V and VI of the mPFC were imaged, traced in three dimensions, and assessed using Sholl and branch structure analyses. Developmental ethanol exposure differentially impacted adult pyramidal neuron morphology depending on mPFC cortical layer. Neurons in layer II/III exhibited increased size and diameter of dendrite trees, whereas neurons in layer V were not affected. Layer VI neurons with long apical dendrites had trees with decreased diameter that extended farther from the soma, and layer VI neurons with short apical dendrite trees exhibited decreased tree size overall. These layer-specific alterations to mPFC neuron morphology may form a novel morphological mechanism underlying long-term mPFC dysfunction and resulting cognitive impairments in FASD. Copyright © 2017 Elsevier B.V. All rights reserved.

Enhancing long-term photostability of BiVO4 photoanodes for solar water splitting by tuning electrolyte composition

NASA Astrophysics Data System (ADS)

Lee, Dong Ki; Choi, Kyoung-Shin

2018-01-01

As the performance of photoelectrodes used for solar water splitting continues to improve, enhancing the long-term stability of the photoelectrodes becomes an increasingly crucial issue. In this study, we report that tuning the composition of the electrolyte can be used as a strategy to suppress photocorrosion during solar water splitting. Anodic photocorrosion of BiVO4 photoanodes involves the loss of V5+ from the BiVO4 lattice by dissolution. We demonstrate that the use of a V5+-saturated electrolyte, which inhibits the photooxidation-coupled dissolution of BiVO4, can serve as a simple yet effective method to suppress anodic photocorrosion of BiVO4. The V5+ species in the solution can also incorporate into the FeOOH/NiOOH oxygen-evolution catalyst layer present on the BiVO4 surface during water oxidation, further enhancing water-oxidation kinetics. The effect of the V5+ species in the electrolyte on both the long-term photostability of BiVO4 and the performance of the FeOOH/NiOOH oxygen-evolution catalyst layer is systematically elucidated.

Is light-induced degradation of a-Si:H/c-Si interfaces reversible?

DOE Office of Scientific and Technical Information (OSTI.GOV)

El Mhamdi, El Mahdi; Holovsky, Jakub; Demaurex, Bénédicte

2014-06-23

Thin hydrogenated amorphous silicon (a-Si:H) films deposited on crystalline silicon (c-Si) surfaces are sensitive probes for the bulk electronic properties of a-Si:H. Here, we use such samples during repeated low-temperature annealing and visible-light soaking to investigate the long-term stability of a-Si:H films. We observe that during annealing the electronic improvement of the interfaces follows stretched exponentials as long as hydrogen evolution in the films can be detected. Once such evolution is no longer observed, the electronic improvement occurs much faster. Based on these findings, we discuss how the reversibility of light-induced defects depends on (the lack of observable) hydrogen evolution.

Stratospheric effects on trends of mesospheric ice clouds (Invited)

NASA Astrophysics Data System (ADS)

Luebken, F.; Baumgarten, G.; Berger, U.

2009-12-01

Ice layers in the summer mesosphere at middle and polar latitudes appear as `noctilucent clouds' (NLC) and `polar mesosphere clouds'(PMC) when observed by optical methods from the ground or from satellites, respectively. A newly developed model of the atmosphere called LIMA (Leibniz Institute Middle Atmosphere Model) nicely reproduces the mean conditions of the summer mesopause region and is used to study the ice layer morphology (LIMA/ice). LIMA nudges to ECMWF data in the troposphere and lower stratosphere which influences the background conditions in the mesosphere and ice cloud morphology. Since ice layer formation is very sensitive to the thermal structure of the mesopause region the morphology of NLC and PMC is frequently discussed in terms of long term variations. Model runs of LIMA/ice are now available for 1961 until 2008. A strong correlation between temperatures and PMC altitudes is observed. Applied to historical measurements this gives negligible temperature trends at PMC altitudes (approximately 0.01-0.02 K/y). Trace gas concentrations are kept constant in LIMA except for water vapor which is modified by variable solar radiation. Still, long term trends in temperatures and ice layer parameters are observed, consistent with observations. We present results regarding inter-annual variability of upper mesosphere temperatures, water vapor, and ice clouds, and also long term variations. We compare our model results with satellite borne and lidar observations including some record high NLC parameters measured in the summer season of 2009. The latitudinal dependence of trends and ice layer parameters is discussed, including a NH/SH comparison. We will present an explanation of the trends in the background atmosphere and ice layer parameters.

Evolution of Body Elongation in Gymnophthalmid Lizards: Relationships with Climate

PubMed Central

Grizante, Mariana B.; Brandt, Renata; Kohlsdorf, Tiana

2012-01-01

The evolution of elongated body shapes in vertebrates has intrigued biologists for decades and is particularly recurrent among squamates. Several aspects might explain how the environment influences the evolution of body elongation, but climate needs to be incorporated in this scenario to evaluate how it contributes to morphological evolution. Climatic parameters include temperature and precipitation, two variables that likely influence environmental characteristics, including soil texture and substrate coverage, which may define the selective pressures acting during the evolution of morphology. Due to development of geographic information system (GIS) techniques, these variables can now be included in evolutionary biology studies and were used in the present study to test for associations between variation in body shape and climate in the tropical lizard family Gymnophthalmidae. We first investigated how the morphological traits that define body shape are correlated in these lizards and then tested for associations between a descriptor of body elongation and climate. Our analyses revealed that the evolution of body elongation in Gymnophthalmidae involved concomitant changes in different morphological traits: trunk elongation was coupled with limb shortening and a reduction in body diameter, and the gradual variation along this axis was illustrated by less-elongated morphologies exhibiting shorter trunks and longer limbs. The variation identified in Gymnophthalmidae body shape was associated with climate, with the species from more arid environments usually being more elongated. Aridity is associated with high temperatures and low precipitation, which affect additional environmental features, including the habitat structure. This feature may influence the evolution of body shape because contrasting environments likely impose distinct demands for organismal performance in several activities, such as locomotion and thermoregulation. The present study establishes a connection between morphology and a broader natural component, climate, and introduces new questions about the spatial distribution of morphological variation among squamates. PMID:23166767

Justifying and Proving in the Cabri Environment.

ERIC Educational Resources Information Center

Mariotti, Maria Alessandra

2001-01-01

Describes a long term teaching experiment carried out with students from grades 9 and 10. Aims at clarifying the role of the Cabri environment in teaching-learning processes. Analysis of protocols shows the possible evolution of a justification into a proof but at the same time indicates that this evolution is not expected to be simple and…

Evolution of Cygnus X-3 through its Radio and X-ray States

NASA Astrophysics Data System (ADS)

Szostek, A.; Zdziarski, A. A.; McCollough, M. L.

2009-05-01

Based on X-ray spectra and studies of the long-term correlated behavior between radio and soft X-ray, we present a detailed evolution of Cyg X-3 through its radio and X-ray states. We comment on the nature of the hard X-ray tail and possible Simbol X contribution in constraining the models.

Analysis of Submarine Landslides and Canyons along the U.S. Atlantic Margin Using Extended Continental Shelf Mapping Data

NASA Astrophysics Data System (ADS)

Chaytor, J. D.; Brothers, D. S.; Ten Brink, U. S.; Hoy, S. K.; Baxter, C.; Andrews, B.

2013-12-01

U.S. Geological Survey (USGS) studies of the U.S. Atlantic continental slope and rise aim to understand the: 1) the role of submarine landslides in tsunami generation, and 2) the linkages between margin morphology and sedimentary processes, particularly in and around submarine canyon systems. Data from U.S. Extended Continental Shelf (ECS) and numerous subsequent mapping surveys have facilitated the identification and characterization of submarine landslides and related features in fine detail over an unprecedented spatial extent. Ongoing analysis of USGS collected piston cores, sub-bottom and multichannel seismic (MCS) reflection profiles, and an extensive suite of legacy MCS data from two landslides, the Southern New England landslide zone and the Currituck Landslide, suggest that the most recent major landslide events are pre-Holocene, but that failures were complex and most likely multi-phase, at times resulting in extensive overlapping debris deposits. Piston core records plus visual observations of the seafloor from recent TowCam deployments and NOAA Ship Okeanos Explorer ROV dives reveal ongoing development of colluvial wedge-style debris aprons at the base of scarps within these landslides, showing that these regions continue to evolve long after the initial failure events. Multibeam bathymetry data and MCS profiles along the upper slope reveal evidence for vertical fluid migration and possible seabed gas expulsion. These observations underscore the need to reevaluate the sources of pore fluid overpressure in slope sediments and their role in landslide generation. ECS and more recent multibeam mapping have provided the opportunity to investigate the full extent of submarine canyon morphology and evolution from Cape Hatteras up to the US-Canadian EEZ, which has led to better understanding of the important role of antecedent margin physiography on their development. Six submarine canyon systems along the margin (Veatch, Hydrographer, Hudson, Wilmington-Baltimore, Norfolk-Washington, and Hatteras) are being investigated from the canyon heads down to their deep-water submarine fans in an effort to characterize their sediment transport history and constrain the influences of external processes on their morphology. Each canyon-fan system is morphologically unique and is strongly controlled by source region, antecedent margin morphology, landslide and debris flow processes, and the long-term influence of deep-water (along-slope) currents.

Nuclear markers reveal that inter-lake cichlids' similar morphologies do not reflect similar genealogy.

PubMed

Kassam, Daud; Seki, Shingo; Horic, Michio; Yamaoka, Kosaku

2006-08-01

The apparent inter-lake morphological similarity among East African Great Lakes' cichlid species/genera has left evolutionary biologists asking whether such similarity is due to sharing of common ancestor or mere convergent evolution. In order to answer such question, we first used Geometric Morphometrics, GM, to quantify morphological similarity and then subsequently used Amplified Fragment Length Polymorphism, AFLP, to determine if similar morphologies imply shared ancestry or convergent evolution. GM revealed that not all presumed morphological similar pairs were indeed similar, and the dendrogram generated from AFLP data indicated distinct clusters corresponding to each lake and not inter-lake morphological similar pairs. Such results imply that the morphological similarity is due to convergent evolution and not shared ancestry. The congruency of GM and AFLP generated dendrograms imply that GM is capable of picking up phylogenetic signal, and thus GM can be potential tool in phylogenetic systematics.

Mouse pancreas tissue slice culture facilitates long-term studies of exocrine and endocrine cell physiology in situ.

PubMed

Marciniak, Anja; Selck, Claudia; Friedrich, Betty; Speier, Stephan

2013-01-01

Studies on pancreatic cell physiology rely on the investigation of exocrine and endocrine cells in vitro. Particularly, in the case of the exocrine tissue these studies have suffered from a reduced functional viability of acinar cells in culture. As a result not only investigations on dispersed acinar cells and isolated acini were limited in their potential, but also prolonged studies on pancreatic exocrine and endocrine cells in an intact pancreatic tissue environment were unfeasible. To overcome these limitations, we aimed to establish a pancreas tissue slice culture platform to allow long-term studies on exocrine and endocrine cells in the intact pancreatic environment. Mouse pancreas tissue slice morphology was assessed to determine optimal long-term culture settings for intact pancreatic tissue. Utilizing optimized culture conditions, cell specificity and function of exocrine acinar cells and endocrine beta cells were characterized over a culture period of 7 days. We found pancreas tissue slices cultured under optimized conditions to have intact tissue specific morphology for the entire culture period. Amylase positive intact acini were present at all time points of culture and acinar cells displayed a typical strong cell polarity. Amylase release from pancreas tissue slices decreased during culture, but maintained the characteristic bell-shaped dose-response curve to increasing caerulein concentrations and a ca. 4-fold maximal over basal release. Additionally, endocrine beta cell viability and function was well preserved until the end of the observation period. Our results show that the tissue slice culture platform provides unprecedented maintenance of pancreatic tissue specific morphology and function over a culture period for at least 4 days and in part even up to 1 week. This analytical advancement now allows mid -to long-term studies on the cell biology of pancreatic disorder pathogenesis and therapy in an intact surrounding in situ.

Mouse Pancreas Tissue Slice Culture Facilitates Long-Term Studies of Exocrine and Endocrine Cell Physiology in situ

PubMed Central

Marciniak, Anja; Selck, Claudia; Friedrich, Betty; Speier, Stephan

2013-01-01

Studies on pancreatic cell physiology rely on the investigation of exocrine and endocrine cells in vitro. Particularly, in the case of the exocrine tissue these studies have suffered from a reduced functional viability of acinar cells in culture. As a result not only investigations on dispersed acinar cells and isolated acini were limited in their potential, but also prolonged studies on pancreatic exocrine and endocrine cells in an intact pancreatic tissue environment were unfeasible. To overcome these limitations, we aimed to establish a pancreas tissue slice culture platform to allow long-term studies on exocrine and endocrine cells in the intact pancreatic environment. Mouse pancreas tissue slice morphology was assessed to determine optimal long-term culture settings for intact pancreatic tissue. Utilizing optimized culture conditions, cell specificity and function of exocrine acinar cells and endocrine beta cells were characterized over a culture period of 7 days. We found pancreas tissue slices cultured under optimized conditions to have intact tissue specific morphology for the entire culture period. Amylase positive intact acini were present at all time points of culture and acinar cells displayed a typical strong cell polarity. Amylase release from pancreas tissue slices decreased during culture, but maintained the characteristic bell-shaped dose-response curve to increasing caerulein concentrations and a ca. 4-fold maximal over basal release. Additionally, endocrine beta cell viability and function was well preserved until the end of the observation period. Our results show that the tissue slice culture platform provides unprecedented maintenance of pancreatic tissue specific morphology and function over a culture period for at least 4 days and in part even up to 1 week. This analytical advancement now allows mid -to long-term studies on the cell biology of pancreatic disorder pathogenesis and therapy in an intact surrounding in situ. PMID:24223842

The effects of Creatine Long-Term Supplementation on Muscle Morphology and Swimming Performance in Rats

PubMed Central

Yildiz, Ahmet; Ozdemir, Ercan; Gulturk, Sefa; Erdal, Sena

2009-01-01

Creatine (Cr) has been shown to increase the total muscle mass. The purpose of this study was to investigate the effect of Cr supplementation on muscle morphology and swimming performance, using an animal model. Each rat was subjected to exercise 15-minute period daily for the 12 weeks. The rats were randomly divided into four groups: no Cr supplementation (CON), no Cr supplementation and incomplete food intake (lacking lysine and methionine in diet for rats) (INCO), Cr supplementation 1 g·kg-1·day-1 (CREAT-I) and Cr supplementation 2 g·kg-1·day-1 (CREAT-II). Three months later, all groups adult rats exercised in swimming pool chambers. Swimming time was recorded as minute for each rat. Following swimming performance period, the animals were killed by cervical dislocation and the gastrocnemius and diaphragm muscles were dissected. Serial slices of 5-7 μm were allocated paraffin wax and histochemical staining procedure of cross-sections was carried out with heamatoxylin-eosin technics. All groups gained body weight at the end of 12 weeks but there was no statistical difference among them. Swimming time values were statistical difference between CREAT-II and CON group as well as between CREAT-I and CON group (p < 0.05). In the INCO group was determined increased connective tissue cell of the muscle sample. In contrast, in the CREAT-I and CREAT-II group, the basic histological changes were large-scale muscle fibers and hypertrophic muscle cells. These results suggest that long-term creatine supplementation increased the number of muscle fibers and enhanced endurance swimming performance in rats. Key points There is no study about the effects of creatine long-term supplementation on muscle morphology and swimming performance in rats. Long-term creatine supplementation increase muscle hypertrophy (but not body weight) and enhance endurance swimming performance in rats. The quantitative analysis indicated that the number of muscle fibers per defined area increased in creatine supplementation groups. PMID:24149591

SPIN90 Modulates Long-Term Depression and Behavioral Flexibility in the Hippocampus

PubMed Central

Kim, Dae Hwan; Kang, Minkyung; Kim, Chong-Hyun; Huh, Yun Hyun; Cho, In Ha; Ryu, Hyun-Hee; Chung, Kyung Hwun; Park, Chul-Seung; Rhee, Sangmyung; Lee, Yong-Seok; Song, Woo Keun

2017-01-01

The importance of actin-binding proteins (ABPs) in the regulation of synapse morphology and plasticity has been well established. SH3 protein interacting with Nck, 90 kDa (SPIN90), an Nck-interacting protein highly expressed in synapses, is essential for actin remodeling and dendritic spine morphology. Synaptic targeting of SPIN90 to spine heads or dendritic shafts depends on its phosphorylation state, leading to blockage of cofilin-mediated actin depolymerization and spine shrinkage. However, the physiological role of SPIN90 in long-term plasticity, learning and memory are largely unknown. In this study, we demonstrate that Spin90-knockout (KO) mice exhibit substantial deficits in synaptic plasticity and behavioral flexibility. We found that loss of SPIN90 disrupted dendritic spine density in CA1 neurons of the hippocampus and significantly impaired long-term depression (LTD), leaving basal synaptic transmission and long-term potentiation (LTP) intact. These impairments were due in part to deficits in AMPA receptor endocytosis and its pre-requisites, GluA1 dephosphorylation and postsynaptic density (PSD) 95 phosphorylation, but also by an intrinsic activation of Akt-GSK3β signaling as a result of Spin90-KO. In accordance with these defects, mice lacking SPIN90 were found to carry significant deficits in object-recognition and behavioral flexibility, while learning ability was largely unaffected. Collectively, these findings demonstrate a novel modulatory role for SPIN90 in hippocampal LTD and behavioral flexibility. PMID:28979184

Long-term effects of methamphetamine exposure in adolescent mice on the future ovarian reserve in adulthood.

PubMed

Wang, Lan; Qu, Guoqiang; Dong, Xiyuan; Huang, Kai; Kumar, Molly; Ji, Licheng; Wang, Ya; Yao, Junning; Yang, Shulin; Wu, Ruxing; Zhang, Hanwang

2016-02-03

Currently, there is an increasing prevalence of adolescent exposure to methamphetamine (MA). However, there is a paucity of information concerning the long-term impact of early exposure to MA upon female fertility and ovarian reserve. The aim of this study was to investigate the effect of long-term MA exposure in adolescents on their ovarian reserve in adulthood. Adolescent mice received intraperitoneal injections of MA (5mg/kg, three times per week) or saline from the 21st postnatal day for an 8 week period. Morphological, histological, biochemical, hormonal and ethological parameters were evaluated. An impaired ovarian reserve and vitality was found in the group treated with MA, manifesting in morphological-apparent mitochondrial damage, an activated apoptosis pathway in the ovarian tissue, a downward expression of ovarian anti-Mullerian hormone (AMH), a decreased number of primordial and growing follicles, an increased number of atretic follicles, and a depressed secretion of AMH, estradiol and progesterone from granulosa cells. However, no significant difference was noticed regarding the estrous cycle, the mating ability and the fertility outcome in the reproductive age of the mice after a period of non-medication. The present results confirmed that a long term exposure to methamphetamine in adolescent mice does have an adverse impact on their ovarian reserve, which indicates that such an early abuse of MA might influence the fertility lifespan of the female mouse. Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.

Dysregulation of synaptic plasticity precedes appearance of morphological defects in a Pten conditional knockout mouse model of autism.

PubMed

Takeuchi, Koichi; Gertner, Michael J; Zhou, Jing; Parada, Luis F; Bennett, Michael V L; Zukin, R Suzanne

2013-03-19

The phosphoinositide signaling system is a crucial regulator of neural development, cell survival, and plasticity. Phosphatase and tensin homolog deleted on chromosome 10 (PTEN) negatively regulates phosphatidylinositol 3-kinase signaling and downstream targets. Nse-Cre Pten conditional knockout mice, in which Pten is ablated in granule cells of the dentate gyrus and pyramidal neurons of the hippocampal CA3, but not CA1, recapitulate many of the symptoms of humans with inactivating PTEN mutations, including progressive hypertrophy of the dentate gyrus and deficits in hippocampus-based social and cognitive behaviors. However, the impact of Pten loss on activity-dependent synaptic plasticity in this clinically relevant mouse model of Pten inactivation remains unclear. Here, we show that two phosphatidylinositol 3-kinase- and protein synthesis-dependent forms of synaptic plasticity, theta burst-induced long-term potentiation and metabotropic glutamate receptor (mGluR)-dependent long-term depression, are dysregulated at medial perforant path-to-dentate gyrus synapses of young Nse-Cre Pten conditional knockout mice before the onset of visible morphological abnormalities. In contrast, long-term potentiation and mGluR-dependent long-term depression are normal at CA3-CA1 pyramidal cell synapses at this age. Our results reveal that deletion of Pten in dentate granule cells dysregulates synaptic plasticity, a defect that may underlie abnormal social and cognitive behaviors observed in humans with Pten inactivating mutations and potentially other autism spectrum disorders.

Template-directed control of crystal morphologies.

PubMed

Meldrum, Fiona C; Ludwigs, Sabine

2007-02-12

Biominerals are characterised by unique morphologies, and it is a long-term synthetic goal to reproduce these synthetically. We here apply a range of templating routes to investigate whether a fascinating category of biominerals, the single crystals with complex forms, can be produced using simple synthetic methods. Macroporous crystals with sponge-like morphologies identical to that of sea urchin skeletal plates were produced on templating with a sponge-like polymer membrane. Similarly, patterning of individual crystal faces was achieved from the micrometer to nanometer scale through crystallisation on colloidal particle monolayers and patterned polymer thin films. These experiments demonstrate the versatility of a templating approach to producing single crystals with unique morphologies.

Highway to Space: The Direct Connection Between the Lower and the Upper Atmosphere of Mars Sheds a New Light on the History of Water

NASA Astrophysics Data System (ADS)

Montmessin, F.; Lefèvre, F.; Korablev, O.; Fedorova, A.; Bertaux, J.-L.; Chaufray, J.-Y.; Chaffin, M.; Schneider, N.; Maltagliati, L.; Määttänen, A.; Trokhimovsky, A.

2014-07-01

We present a synthesis of the decade-long Mars Express SPICAM observations in an attempt to assemble a single, coherent picture that has implications for the long-term evolution of water and hydrogen on Mars.

The Future of Nearshore Processes Research

NASA Astrophysics Data System (ADS)

Elko, N.; Feddersen, F.; Foster, D. L.; Holman, R. A.; McNinch, J.; Ozkan-Haller, H. T.; Plant, N. G.; Raubenheimer, B.; Elgar, S.; Hay, A. E.; Holland, K. T.; Kirby, J. T., Jr.; Lippmann, T. C.; Miller, J. K.; Stockdon, H. F.; Ashton, A. D.; Boehm, A. B.; Clark, D.; Cowen, E.; Dalyander, S.; Gelfenbaum, G. R.; Hapke, C. J.; MacMahan, J.; McNamara, D.; Mulligan, R. P.; Palmsten, M. L.; Ruggiero, P.; Sherwood, C. R.; Hsu, T. J.

2014-12-01

Over 70 members of the nearshore coastal processes research community convened in April 2014 to discuss a vision for the future of nearshore science while celebrating the memories and contributions of our recently departed colleague, Abby Sallenger. The participants reviewed community accomplishments over the past four decades. Federal agencies, including FEMA, NOAA, NPS, USGS, USACE, and NRL discussed the most pressing societal needs within the coastal zone. The group engaged in a retrospective of the last four decades of progress, assessed the current status and limitations of nearshore processes research, and developed a vision for the future that focuses on societally relevant problems. The top research topics identified included: Long-term Coastal Impacts: Meaningfully improve our understanding and prediction of the long-term coastal effects of sea level rise and changes in storminess patterns and associated efforts to protect coastal infrastructure. Extreme Events: Coastal flooding, overland flow, and concurrent morphological evolution during extreme events including the subsequent process of coastal recovery. Human and Ecosystem Health: Linkages between physical coastal processes (transport and mixing) and land-based pollution (pathogens, nutrients, toxic contaminants). Critical for addressing these research questions is enabling infrastructure, such as new observational tools and data sets, models, and nearshore-community communication and collaboration. Idea and concepts developed during the meeting (to be published in Shore and Beach) will be presented to foster collaboration and advocacy amongst the wider nearshore community. Meeting materials are available at: https://scripps.ucsd.edu/centers/nearshorefuture/.

Assessment of Mud-Capped Dredge Pit Evolution Offshore Louisiana: Implications to Sand Excavation and Coastal Restoration

NASA Astrophysics Data System (ADS)

Xu, K.; Miner, M. D.; Bentley, S. J.; Li, C.; Obelcz, J.; O'Connor, M. C.

2016-02-01

The shelf offshore Louisiana is characterized by a dominantly muddy seafloor with a paucity of restoration-quality sand proximal to shore. Discrete sand deposits associated with ancient rivers that incised the shelf during lower sea-level positions occur close to shore. These shelf channel sands have been targeted for coastal restoration projects resulting in significant cost savings over more distal deposits. Several recent projects targeted shelf paleo-fluvial deposits comprising relatively deep (10 m) channel sands underlying a muddy overburden. Because of contrasting characteristics of cohesive mud vs. non-cohesive sand and potential modern fluvial mud supply from the Mississippi and Atchafalaya Rivers, long term pit evolution is poorly understood relative to their more common sand-only counterparts. Alterations to seafloor topography from dredging shelf sediment resources can potentially affect oil and gas infrastructure or other resources of concern (i.e. historic shipwrecks) located proximal to dredge pits. Site-specific data required to make accurate predictions and empirical measurements to test and validate predictive models were only available for Peveto Channel offshore Holly Beach, Louisiana. Here we present new geophysical and geological data (bathymetry, sidescan, subbottom, and radionuclide of sediment cores) and physical oceanographic observations (hydrodynamics and sediment dynamics) collected at Raccoon Island (dredged in 2013) dredge pit in Louisiana. These field data collections along with pre-existing data provide a time-series to capture evolution at Raccoon Island post-excavation. Conceptual morphological models will be developed for dredge pit evolution and testing effectiveness of setback buffers protecting pipelines, habitats, and cultural resources. Our results will increase decision making ability regarding safety and protecting environmental and cultural resources, and better management of valuable sand resources.

On the long-term fitness of cells in periodically switching environments.

PubMed

Pang, Ning-Ning; Tzeng, Wen-Jer

2008-01-01

Because all the cell populations are capable of making switches between different genetic expression states in response to the environmental change, Thattai and van Oudenaarden (Genetics 167, 523-530, 2004) have raised a very interesting question: In a constantly fluctuating environment, which type of cell population (heterogeneous or homogeneous) is fitter in the long term? This problem is very important to development and evolution biology. We thus take an extensive analysis about how the cell population evolves in a periodically switching environment either with symmetrical time-span or asymmetrical time-span. A complete picture of the phase diagrams for both cases is obtained. Furthermore, we find that the systems with time-dependent cellular transitions all collapse to the same set of dynamical equations with the modified parameters. Furthermore, we also explain in detail how the fitness problem bears much resemblance to the phenomenon, stochastic resonance, in physical sciences. Our results could be helpful for the biologists to design artificial evolution experiments and unveil the mystery of development and evolution.

Illicit Stimulant Use Is Associated with Abnormal Substantia Nigra Morphology in Humans

PubMed Central

Todd, Gabrielle; Noyes, Carolyn; Flavel, Stanley C.; Della Vedova, Chris B.; Spyropoulos, Peter; Chatterton, Barry; Berg, Daniela; White, Jason M.

2013-01-01

Use of illicit stimulants such as methamphetamine, cocaine, and ecstasy is an increasing health problem. Chronic use can cause neurotoxicity in animals and humans but the long-term consequences are not well understood. The aim of the current study was to investigate the long-term effect of stimulant use on the morphology of the human substantia nigra. We hypothesised that history of illicit stimulant use is associated with an abnormally bright and enlarged substantia nigra (termed ‘hyperechogenicity’) when viewed with transcranial sonography. Substantia nigra morphology was assessed in abstinent stimulant users (n = 36; 31±9 yrs) and in two groups of control subjects: non-drug users (n = 29; 24±5 yrs) and cannabis users (n = 12; 25±7 yrs). Substantia nigra morphology was viewed with transcranial sonography and the area of echogenicity at the anatomical site of the substantia nigra was measured at its greatest extent. The area of substantia nigra echogenicity was significantly larger in the stimulant group (0.273±0.078 cm2) than in the control (0.201±0.054 cm2; P<0.001) and cannabis (0.202±0.045 cm2; P<0.007) groups. 53% of stimulant users exhibited echogenicity that exceeded the 90th percentile for the control group. The results of the current study suggest that individuals with a history of illicit stimulant use exhibit abnormal substantia nigra morphology. Substantia nigra hyperechogenicity is a strong risk factor for developing Parkinson's disease later in life and further research is required to determine if the observed abnormality in stimulant users is associated with a functional deficit of the nigro-striatal system. PMID:23418568

Morphological response of a large-scale coastal blowout to a strong magnitude transport event

NASA Astrophysics Data System (ADS)

Delgado-Fernandez, Irene; Jackson, Derek; Smith, Alexander; Smyth, Thomas

2017-04-01

Large-scale blowouts are fundamental features of many coastal dune fields in temperate areas around the world. These distinctive erosional (mostly unvegetated) landform features are often characterised by a significant depression area and a connected depositional lobe at their downwind edges. These areas also provide important transport corridors to inland parts of the dune system and can provide ideal habitats for specialist flora and fauna as well as helping to enhance landscape diversity. The actual morphology and shape/size of blowouts can significantly modify the overlying atmospheric boundary layer of the wind, influencing wind flow steering and intensity within the blowout, and ultimately aeolian sediment transport. While investigations of morphological changes within blowouts have largely focused on the medium (months) to long (annual/decadal) temporal scale, studies of aeolian transport dynamics within blowouts have predominantly focused on the short-term (event) scale. Work on wind-transport processes in blowouts is still relatively rare, with ad-hoc studies providing only limited information on airflow and aeolian transport. Large-scale blowouts are characterised by elongated basins that can reach hundreds of meters, potentially resulting in airflow and transport dynamics that are very different from their smaller scale counterparts. This research focuses on a short-term, strong wind event measured at the Devil's Hole blowout (Sefton dunes, NW England), a large-scale blowout feature approximately 300 m in length and 100 m in width. In situ measurements of airflow and aeolian transport were collected during a short-term experiment on the 22nd October 2015. A total of twenty three, 3D ultrasonic anemometers, sand traps, and wenglor sensors were deployed in a spatial grid covering the distal end of the basin, walls, and depositional lobe. Terrestrial laser scanning (TLS) was used to quantify morphological changes within the blowout before and after the strong magnitude transport event. This allowed, for the first time, examination of the morphological response as a direct result of a high energy wind event as it passes through a large-scale blowout. Results indicate strong steering and acceleration of the wind along the blowout basin and up the south wall opposite to the incident regional winds. These accelerated flows generated very strong transport rates of up to 3 g/s along the basin, and moderate strong transport rates of up to 1.5 g/s up the steep north wall. The coupling of high-frequency wind events and transport response together with topographic changes defined by TLS data allows, for the first time, the ability to co-connect the morphological evolution of a coastal blowout landform with the localised driving processes.

Growth temperature modulates the spatial variability of leaf morphology and chemical elements within crowns of climatically divergent Acer rubrum genotypes.

PubMed

Shahba, Mohamed A; Bauerle, William L

2009-07-01

Our understanding of leaf acclimation in relation to temperature of fully grown or juvenile tree crowns is mainly based on research involving spatially uncontrolled growth temperature. In this study, we test the hypothesis that leaf morphology and chemical elements are modulated by within-crown growth temperature differences. We ask whether within-species variation can influence acclimation to elevated temperatures. Within-crown temperature dependence of leaf morphology, carbon and nitrogen was examined in two genotypes of Acer rubrum L. (red maple) from different latitudes, where the mean annual temperature varies between 7.2 and 19.4 degrees C. Crown sections were grown in temperature-controlled chambers at three daytime growth temperatures (25, 33 and 38 degrees C). Leaf growth and resource acquisition were measured at regular intervals over long-term (50 days) controlled daytime growth temperatures. We found significant intraspecific variation in temperature dependence of leaf carbon and nitrogen accumulation between genotypes. Additionally, there was evidence that leaf morphology depended on inherited adaptation. Leaf dry matter and nitrogen content decreased as growth temperature was elevated above 25 degrees C in the genotype native to the cooler climate, whereas they remained fairly constant in response to temperature in the genotype native to the warmer climate. Specific leaf area (SLA) was correlated positively to leaf nitrogen content in both genotypes. The SLA and the relative leaf dry matter content (LM), on the other hand, were correlated negatively to leaf thickness. However, intraspecific variation in SLA and LM versus leaf thickness was highly significant. Intraspecific differences in leaf temperature response between climatically divergent genotypes yielded important implications for convergent evolution of leaf adaptation. Comparison of our results with those of previous studies showed that leaf carbon allocation along a vertical temperature gradient was modulated by growth temperature in the genotype native to the cooler climate. This indicates that within-crown temperature-induced variations in leaf morphology and chemical content should be accounted for in forest ecosystem models.

Modelling rate distributions using character compatibility: implications for morphological evolution among fossil invertebrates

PubMed Central

Wagner, Peter J.

2012-01-01

Rate distributions are important considerations when testing hypotheses about morphological evolution or phylogeny. They also have implications about general processes underlying character evolution. Molecular systematists often assume that rates are Poisson processes with gamma distributions. However, morphological change is the product of multiple probabilistic processes and should theoretically be affected by hierarchical integration of characters. Both factors predict lognormal rate distributions. Here, a simple inverse modelling approach assesses the best single-rate, gamma and lognormal models given observed character compatibility for 115 invertebrate groups. Tests reject the single-rate model for nearly all cases. Moreover, the lognormal outperforms the gamma for character change rates and (especially) state derivation rates. The latter in particular is consistent with integration affecting morphological character evolution. PMID:21795266

Phylogeny, classification, and fruit evolution of the species-rich Neotropical bellflowers (Campanulaceae: Lobelioideae).

PubMed

Lagomarsino, Laura P; Antonelli, Alexandre; Muchhala, Nathan; Timmermann, Allan; Mathews, Sarah; Davis, Charles C

2014-12-01

• The species-rich Neotropical genera Centropogon, Burmeistera, and Siphocampylus represent more than half of the ∼1200 species in the subfamily Lobelioideae (Campanulaceae). They exhibit remarkable morphological variation in floral morphology and habit. Limited taxon sampling and phylogenetic resolution, however, obscures our understanding of relationships between and within these genera and underscores our uncertainty of the systematic value of fruit type as a major diagnostic character.• We inferred a phylogeny from five plastid DNA regions (rpl32-trnL, ndhF-rpl32, rps16-trnK, trnG-trnG-trns, rbcL) using maximum-likelihood and Bayesian inference. Ancestral character reconstructions were applied to infer patterns of fruit evolution.• Our results demonstrate that the majority of species in the genera Centropogon, Burmeistera, and Siphocampylus together form a primarily mainland Neotropical clade, collectively termed the "centropogonids." Caribbean Siphocampylus, however, group with other Caribbean lobelioid species. We find high support for the monophyly of Burmeistera and the polyphyly of Centropogon and mainland Siphocampylus. The ancestral fruit type of the centropogonids is a capsule; berries have evolved independently multiple times.• Our plastid phylogeny greatly improves the phylogenetic resolution within Neotropical Lobelioideae and highlights the need for taxonomic revisions in the subfamily. Inference of ancestral character states identifies a dynamic pattern of fruit evolution within the centropogonids, emphasizing the difficulty of diagnosing broad taxonomic groups on the basis of fruit type. Finally, we identify that the centropogonids, Lysipomia, and Lobelia section Tupa form a Pan-Andean radiation with broad habitat diversity. This clade is a prime candidate for investigations of Neotropical biogeography and morphological evolution. © 2014 Botanical Society of America, Inc.

White Paper Summary of 2nd ASTM International Workshop on Hydrides in Zirconium Alloy Cladding

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sindelar, R.; Louthan, M.; PNNL, B.

2015-05-29

This white paper recommends that ASTM International develop standards to address the potential impact of hydrides on the long term performance of irradiated zirconium alloys. The need for such standards was apparent during the 2nd ASTM International Workshop on Hydrides in Zirconium Alloy Cladding and Assembly Components, sponsored by ASTM International Committee C26.13 and held on June 10-12, 2014, in Jackson, Wyoming. The potentially adverse impacts of hydrogen and hydrides on the long term performance of irradiated zirconium-alloy cladding on used fuel were shown to depend on multiple factors such as alloy chemistry and processing, irradiation and post irradiation history,more » residual and applied stresses and stress states, and the service environment. These factors determine the hydrogen content and hydride morphology in the alloy, which, in turn, influence the response of the alloy to the thermo-mechanical conditions imposed (and anticipated) during storage, transport and disposal of used nuclear fuel. Workshop presentations and discussions showed that although hydrogen/hydride induced degradation of zirconium alloys may be of concern, the potential for occurrence and the extent of anticipated degradation vary throughout the nuclear industry because of the variations in hydrogen content, hydride morphology, alloy chemistry and irradiation conditions. The tools and techniques used to characterize hydrides and hydride morphologies and their impacts on material performance also vary. Such variations make site-to-site comparisons of test results and observations difficult. There is no consensus that a single material or system characteristic (e.g., reactor type, burnup, hydrogen content, end-of life stress, alloy type, drying temperature, etc.) is an effective predictor of material response during long term storage or of performance after long term storage. Multi-variable correlations made for one alloy may not represent the behavior of another alloy exposed to identical conditions and the material responses to thermo-mechanical exposures will be different depending on the materials and systems used. The discussions at the workshop showed several gaps in the standardization of processes and techniques necessary to assess the long term performance of irradiated zirconium alloy cladding during dry storage and transport. The development of, and adherence to, standards to help bridge these gaps will strengthen the technical basis for long term storage and post-storage operations, provide consistency across the nuclear industry, maximize the value of most observations, and enhance the understanding of behavioral differences among alloys. The need for, and potential benefits of, developing the recommended standards are illustrated in the various sections of this report.« less

The structural and electrical evolution of graphene by oxygen plasma-induced disorder.

PubMed

Kim, Dong Chul; Jeon, Dae-Young; Chung, Hyun-Jong; Woo, YunSung; Shin, Jai Kwang; Seo, Sunae

2009-09-16

Evolution of a single graphene layer with disorder generated by remote oxygen plasma irradiation is investigated using atomic force microscopy, Raman spectroscopy and electrical measurement. Gradual changes of surface morphology from planar graphene to isolated granular structure associated with a decrease of transconductance are accounted for by two-dimensional percolative conduction by disorder and the oxygen plasma-induced doping effect. The corresponding evolution of Raman spectra of graphene shows several peculiarities such as a sudden appearance of a saturated D peak followed by a linear decrease in its intensity, a relatively inert characteristic of a D' peak and a monotonic increase of a G peak position as the exposure time to oxygen plasma increases. These are discussed in terms of a disorder-induced change of Raman spectra in the graphite system.

Functional 3-D cardiac co-culture model using bioactive chitosan nanofiber scaffolds.

PubMed

Hussain, Ali; Collins, George; Yip, Derek; Cho, Cheul H

2013-02-01

The in vitro generation of a three-dimensional (3-D) myocardial tissue-like construct employing cells, biomaterials, and biomolecules is a promising strategy in cardiac tissue regeneration, drug testing, and tissue engineering applications. Despite significant progress in this field, current cardiac tissue models are not yet able to stably maintain functional characteristics of cardiomyocytes for long-term culture and therapeutic purposes. The objective of this study was to fabricate bioactive 3-D chitosan nanofiber scaffolds using an electrospinning technique and exploring its potential for long-term cardiac function in the 3-D co-culture model. Chitosan is a natural polysaccharide biomaterial that is biocompatible, biodegradable, non-toxic, and cost effective. Electrospun chitosan was utilized to provide structural scaffolding characterized by scale and architectural resemblance to the extracellular matrix (ECM) in vivo. The chitosan fibers were coated with fibronectin via adsorption in order to enhance cellular adhesion to the fibers and migration into the interfibrous milieu. Ventricular cardiomyocytes were harvested from neonatal rats and studied in various culture conditions (i.e., mono- and co-cultures) for their viability and function. Cellular morphology and functionality were examined using immunofluorescent staining for alpha-sarcomeric actin (SM-actin) and gap junction protein, Connexin-43 (Cx43). Scanning electron microscopy (SEM) and light microscopy were used to investigate cellular morphology, spatial organization, and contractions. Calcium indicator was used to monitor calcium ion flux of beating cardiomyocytes. The results demonstrate that the chitosan nanofibers retained their cylindrical morphology in long-term cell cultures and exhibited good cellular attachment and spreading in the presence of adhesion molecule, fibronectin. Cardiomyocyte mono-cultures resulted in loss of cardiomyocyte polarity and islands of non-coherent contractions. However, the cardiomyocyte-fibroblast co-cultures resulted in polarized cardiomyocyte morphology and retained their morphology and function for long-term culture. The Cx43 expression in the fibroblast co-culture was higher than the cardiomyocytes mono-culture and endothelial cells co-culture. In addition, fibroblast co-cultures demonstrated synchronized contractions involving large tissue-like cellular networks. To our knowledge, this is the first attempt to test chitosan nanofiber scaffolds as a 3-D cardiac co-culture model. Our results demonstrate that chitosan nanofibers can serve as a potential scaffold that can retain cardiac structure and function. These studies will provide useful information to develop a strategy that allows us to generate engineered 3-D cardiac tissue constructs using biocompatible and biodegradable chitosan nanofiber scaffolds for many tissue engineering applications. Copyright © 2012 Wiley Periodicals, Inc.

Ecogeography, genetics, and the evolution of human body form.

PubMed

Roseman, Charles C; Auerbach, Benjamin M

2015-01-01

Genetic resemblances among groups are non-randomly distributed in humans. This population structure may influence the correlations between traits and environmental drivers of natural selection thus complicating the interpretation of the fossil record when modern human variation is used as a referential model. In this paper, we examine the effects of population structure and natural selection on postcranial traits that reflect body size and shape with application to the more general issue of how climate - using latitude as a proxy - has influenced hominin morphological variation. We compare models that include terms reflecting population structure, ascertained from globally distributed microsatellite data, and latitude on postcranial phenotypes derived from skeletal dimensions taken from a large global sample of modern humans. We find that models with a population structure term fit better than a model of natural selection along a latitudinal cline in all cases. A model including both latitude and population structure terms is a good fit to distal limb element lengths and bi-iliac breadth, indicating that multiple evolutionary forces shaped these morphologies. In contrast, a model that included only a population structure term best explained femoral head diameter and the crural index. The results demonstrate that population structure is an important part of human postcranial variation, and that clinally distributed natural selection is not sufficient to explain among-group differentiation. The distribution of human body form is strongly influenced by the contingencies of modern human origins, which calls for new ways to approach problems in the evolution of human variation, past and present. Copyright © 2014 Elsevier Ltd. All rights reserved.

Workstation Segment Specification for the World-Wide Military Command and Control (WWMCCS) Information System (WIS)

DTIC Science & Technology

1989-07-01

software eventually, and which indicate the general thrust of evolution and growth capabilities required of the workstation segment. These GRAY sections...configuration control over the evolution of the system. (" - The transition from the WWMCCS Standard ADP system to WIS will be gradual and will be...has been designed to support the workstation needs required for most WIS users, and is the workstation that will support the long-term evolution of

Experiments on the role of deleterious mutations as stepping stones in adaptive evolution

PubMed Central

Covert, Arthur W.; Lenski, Richard E.; Wilke, Claus O.; Ofria, Charles

2013-01-01

Many evolutionary studies assume that deleterious mutations necessarily impede adaptive evolution. However, a later mutation that is conditionally beneficial may interact with a deleterious predecessor before it is eliminated, thereby providing access to adaptations that might otherwise be inaccessible. It is unknown whether such sign-epistatic recoveries are inconsequential events or an important factor in evolution, owing to the difficulty of monitoring the effects and fates of all mutations during experiments with biological organisms. Here, we used digital organisms to compare the extent of adaptive evolution in populations when deleterious mutations were disallowed with control populations in which such mutations were allowed. Significantly higher fitness levels were achieved over the long term in the control populations because some of the deleterious mutations served as stepping stones across otherwise impassable fitness valleys. As a consequence, initially deleterious mutations facilitated the evolution of complex, beneficial functions. We also examined the effects of disallowing neutral mutations, of varying the mutation rate, and of sexual recombination. Populations evolving without neutral mutations were able to leverage deleterious and compensatory mutation pairs to overcome, at least partially, the absence of neutral mutations. Substantially raising or lowering the mutation rate reduced or eliminated the long-term benefit of deleterious mutations, but introducing recombination did not. Our work demonstrates that deleterious mutations can play an important role in adaptive evolution under at least some conditions. PMID:23918358

Experiments on the role of deleterious mutations as stepping stones in adaptive evolution.

PubMed

Covert, Arthur W; Lenski, Richard E; Wilke, Claus O; Ofria, Charles

2013-08-20

Many evolutionary studies assume that deleterious mutations necessarily impede adaptive evolution. However, a later mutation that is conditionally beneficial may interact with a deleterious predecessor before it is eliminated, thereby providing access to adaptations that might otherwise be inaccessible. It is unknown whether such sign-epistatic recoveries are inconsequential events or an important factor in evolution, owing to the difficulty of monitoring the effects and fates of all mutations during experiments with biological organisms. Here, we used digital organisms to compare the extent of adaptive evolution in populations when deleterious mutations were disallowed with control populations in which such mutations were allowed. Significantly higher fitness levels were achieved over the long term in the control populations because some of the deleterious mutations served as stepping stones across otherwise impassable fitness valleys. As a consequence, initially deleterious mutations facilitated the evolution of complex, beneficial functions. We also examined the effects of disallowing neutral mutations, of varying the mutation rate, and of sexual recombination. Populations evolving without neutral mutations were able to leverage deleterious and compensatory mutation pairs to overcome, at least partially, the absence of neutral mutations. Substantially raising or lowering the mutation rate reduced or eliminated the long-term benefit of deleterious mutations, but introducing recombination did not. Our work demonstrates that deleterious mutations can play an important role in adaptive evolution under at least some conditions.

Modeling of Long-Term Evolution of Hydrophysical Fields of the Black Sea

NASA Astrophysics Data System (ADS)

Dorofeyev, V. L.; Sukhikh, L. I.

2017-11-01

The long-term evolution of the Black Sea dynamics (1980-2020) is reconstructed by numerical simulation. The model of the Black Sea circulation has 4.8 km horizontal spatial resolution and 40 levels in z-coordinates. The mixing processes in the upper layer are parameterized by Mellor-Yamada turbulent model. For the sea surface boundary conditions, atmospheric forcing functions were used, provided for the Black Sea region by the Euro mediterranean Center on Climate Change (CMCC) from the COSMO-CLM regional climate model. These data have a spatial resolution of 14 km and a daily temporal resolution. To evaluate the quality of the hydrodynamic fields derived from the simulation, they were compared with in-situ hydrological measurements and similar results from physical reanalysis of the Black Sea.

Diet and the evolution of the earliest human ancestors

PubMed Central

Teaford, Mark F.; Ungar, Peter S.

2000-01-01

Over the past decade, discussions of the evolution of the earliest human ancestors have focused on the locomotion of the australopithecines. Recent discoveries in a broad range of disciplines have raised important questions about the influence of ecological factors in early human evolution. Here we trace the cranial and dental traits of the early australopithecines through time, to show that between 4.4 million and 2.3 million years ago, the dietary capabilities of the earliest hominids changed dramatically, leaving them well suited for life in a variety of habitats and able to cope with significant changes in resource availability associated with long-term and short-term climatic fluctuations. PMID:11095758

Long-term evolution of 1991 DA: A dynamically evolved extinct Halley-type comet

NASA Technical Reports Server (NTRS)

Hahn, Gerhard; Bailey, M. E.

1992-01-01

The long-term dynamical evolution of 21 variational orbits for the intermediate-period asteroid 1991 DA was followed for up to +/-10(exp 5) years from the present. 1991 DA is close to the 2:7 resonance with Jupiter; it has avoided close encounters, within 1 AU, with this planet for at least the past 30,000 years, even at the node crossing. The future evolution typically shows no close encounters with Jupiter within at least 50,000 years. This corresponds to the mean time between node crossings with either Jupiter or Saturn. Close encounters with Saturn and Jupiter lead to a chaotic evolution for the whole ensemble, while secular perturbations cause large-amplitude swings in eccentricity and inclination (the latter covering the range 15 deg approximately less than i approximately less than 85 deg) which correlate with deep excursions of the perihelion distance to values much less than 1 AU. These variations are similar to those found in P/Machholz and a variety of other high-inclination orbits, e.g., P/Hartley-IRAS. We emphasize the connection between the orbital evolution of 1991 DA and that of Halley-type comets. If 1991 DA was once a comet, it is not surprising that it is now extinct.

Replacement of the ureter by an ileal loop. Quantitative aspects of long-term morphological alterations in minipigs.

PubMed

Pabst, R; Kamran, D

1983-06-01

In minipigs 1 ureter was replaced by a loop of the terminal ileum and the contralateral kidney removed. After 2.5 to 3 years the morphology of the replaced ureter was compared with the normal ileum. Independent of the 3 different operative techniques used, in about half of the pigs there was loss or flattening of the villi. In the other pigs the morphometrically determined number of intraepithelial lymphocytes, the cell density in the lamina propria and the length of the villi did not differ significantly compared with the normal ileum. There was no increase in goblet cells in the crypts. The transitional epithelium covered only a short distance at the anastomotic junctions. Peyer's patches of normal age-related size were found in the replaced ureter. Despite the long-term contact with urine instead of gut contents, in many pigs a normal amount of lymphocytes remained in the "ileal ureter".

The coevolution of long-term pair bonds and cooperation.

PubMed

Song, Z; Feldman, M W

2013-05-01

The evolution of social traits may not only depend on but also change the social structure of the population. In particular, the evolution of pairwise cooperation, such as biparental care, depends on the pair-matching distribution of the population, and the latter often emerges as a collective outcome of individual pair-bonding traits, which are also under selection. Here, we develop an analytical model and individual-based simulations to study the coevolution of long-term pair bonds and cooperation in parental care, where partners play a Snowdrift game in each breeding season. We illustrate that long-term pair bonds may coevolve with cooperation when bonding cost is below a threshold. As long-term pair bonds lead to assortative interactions through pair-matching dynamics, they may promote the prevalence of cooperation. In addition to the pay-off matrix of a single game, the evolutionarily stable equilibrium also depends on bonding cost and accidental divorce rate, and it is determined by a form of balancing selection because the benefit from pair-bond maintenance diminishes as the frequency of cooperators increases. Our findings highlight the importance of ecological factors affecting social bonding cost and stability in understanding the coevolution of social behaviour and social structures, which may lead to the diversity of biological social systems. © 2013 The Authors. Journal of Evolutionary Biology © 2013 European Society For Evolutionary Biology.

Ingestional and transgenerational effects of the Fukushima nuclear accident on the pale grass blue butterfly

PubMed Central

Taira, Wataru; Hiyama, Atsuki; Nohara, Chiyo; Sakauchi, Ko; Otaki, Joji M.

2015-01-01

One important public concern in Japan is the potential health effects on animals and humans that live in the Tohoku-Kanto districts associated with the ingestion of foods contaminated with artificial radionuclides from the collapsed Fukushima Dai-ichi Nuclear Power Plant. Additionally, transgenerational or heritable effects of radiation exposure are also important public concerns because these effects could cause long-term changes in animal and human populations. Here, we concisely review our findings and implications related to the ingestional and transgenerational effects of radiation exposure on the pale grass blue butterfly, Zizeeria maha, which coexists with humans. The butterfly larval ingestion of contaminated leaves found in areas of human habitation, even at low doses, resulted in morphological abnormalities and death for some individuals, whereas other individuals were not affected, at least morphologically. This variable sensitivity serves as a basis for the adaptive evolution of radiation resistance. The distribution of abnormality and mortality rates from low to high doses fits well with a Weibull function model or a power function model. The offspring generated by morphologically normal individuals that consumed contaminated leaves exhibited high mortality rates when fed contaminated leaves; importantly, low mortality rates were restored when they were fed non-contaminated leaves. Our field monitoring over 3 years (2011–2013) indicated that abnormality and mortality rates peaked primarily in the fall of 2011 and decreased afterwards to normal levels. These findings indicate high impacts of early exposure and transgenerationally accumulated radiation effects over a specific period; however, the population regained normality relatively quickly after ∼15 generations within 3 years. PMID:26661851

Using machine learning to explore the long-term evolution of GRS 1915+105

NASA Astrophysics Data System (ADS)

Huppenkothen, Daniela; Heil, Lucy M.; Hogg, David W.; Mueller, Andreas

2017-04-01

Among the population of known Galactic black hole X-ray binaries, GRS 1915+105 stands out in multiple ways. It has been in continuous outburst since 1992, and has shown a wide range of different states that can be distinguished by their timing and spectral properties. These states, also observed in IGR J17091-3624, have in the past been linked to accretion dynamics. Here, we present the first comprehensive study into the long-term evolution of GRS 1915+105, using the entire data set observed with Rossi X-ray Timing Explorer over its 16-yr lifetime. We develop a set of descriptive features allowing for automatic separation of states, and show that supervised machine learning in the form of logistic regression and random forests can be used to efficiently classify the entire data set. For the first time, we explore the duty cycle and time evolution of states over the entire 16-yr time span, and find that the temporal distribution of states has likely changed over the span of the observations. We connect the machine classification with physical interpretations of the phenomenology in terms of chaotic and stochastic processes.

Monitoring California Hardwood Rangeland Resources: An Adaptive Approach

Treesearch

Raul Tuazon

1991-01-01

This paper describes monitoring hardwood rangelands in California within the context of an adaptive or anticipatory approach. A heuristic process of policy evolution under conditions of complexity and uncertainty is presented. Long-term, short-term and program effectiveness monitoring for hardwood rangelands are discussed relative to the process described. The...

ACCELERATED EVOLUTION OF LAND SNAILS MANDARINA IN THE OCEANIC BONIN ISLANDS: EVIDENCE FROM MITOCHONDRIAL DNA SEQUENCES.

PubMed

Chiba, Satoshi

1999-04-01

An endemic land snail genus Mandarina of the oceanic Bonin (Ogasawara) Islands shows exceptionally rapid evolution not only of morphological and ecological traits, but of DNA sequence. A phylogenetic relationship based on mitochondrial DNA (mtDNA) sequences suggests that morphological differences equivalent to the differences between families were produced between Mandarina and its ancestor during the Pleistocene. The inferred phylogeny shows that species with similar morphologies and life habitats appeared repeatedly and independently in different lineages and islands at different times. Sequential adaptive radiations occurred in different islands of the Bonin Islands and species occupying arboreal, semiarboreal, and terrestrial habitat arose independently in each island. Because of a close relationship between shell morphology and life habitat, independent evolution of the same life habitat in different islands created species possesing the same shell morphology in different islands and lineages. This rapid evolution produced some incongruences between phylogenetic relationship and species taxonomy. Levels of sequence divergence of mtDNA among the species of Mandarina is extremely high. The maximum level of sequence divergence at 16S and 12S ribosomal RNA sequence within Mandarina are 18.7% and 17.7%, respectively, and this suggests that evolution of mtDNA of Mandarina is extremely rapid, more than 20 times faster than the standard rate in other animals. The present examination reveals that evolution of morphological and ecological traits occurs at extremely high rates in the time of adaptive radiation, especially in fragmented environments. © 1999 The Society for the Study of Evolution.

Long-Term Research in Ecology and Evolution (LTREE): 2015 survey data.

PubMed

Bradford, Mark A; Leiserowitz, Anthony; Feinberg, Geoffrey; Rosenthal, Seth A; Lau, Jennifer A

2017-11-01

To systematically assess views on contributions and future activities for long-term research in ecology and evolution (LTREE), we conducted and here provide data responses and associated metadata for a survey of ecological and evolutionary scientists. The survey objectives were to: (1) Identify and prioritize research questions that are important to address through long-term, ecological field experiments; and (2) understand the role that these experiments might play in generating and applying ecological and evolutionary knowledge. The survey was developed adhering to the standards of the American Association for Public Opinion Research. It was administered online using Qualtrics Survey Software. Survey creation was a multi-step process, with questions and format developed and then revised with, for example, input from an external advisory committee comprising senior and junior ecological and evolutionary researchers. The final questionnaire was released to ~100 colleagues to ensure functionality and then fielded 2 d later (January 7 th , 2015). Two professional societies distributed it to their membership, including the Ecological Society of America, and it was posted to three list serves. The questionnaire was available through February 8th 2015 and completed by 1,179 respondents. The distribution approach targeted practicing ecologists and evolutionary biologists in the U.S. Quantitative (both ordinal and categorical) closed-ended questions used a predefined set of response categories, facilitating direct comparison across all respondents. Qualitative, open-ended questions, provided respondents the opportunity to develop their own answers. We employed quantitative questions to score views on the extent to which long-term experimental research has contributed to understanding in ecology and evolutionary biology; its role compared to other approaches (e.g., short-term experiments); justifications for and caveats to long-term experiments; and the relative importance of incentives for conducting long-term research. Qualitative questions were used to assess community views on the most important topics and questions for long-term research to address, and primary incentives and challenges to realizing this work. Finally, demographic data were collected to determine if views were conditional on such things as years of experience and field of expertise. The final questionnaire and all responses are provided for unrestricted use. © 2017 by the Ecological Society of America.

Loess deposits since early Pleistocene in northeast China and implications for desert evolution in east China

NASA Astrophysics Data System (ADS)

Sun, Miao; Zhang, Xujiao; Tian, Mingzhong; Liu, Ru; He, Zexin; Qi, Lin; Qiao, Yansong

2018-04-01

Loess deposits and deserts are regarded as coupled geological systems and loess deposits on the periphery of deserts can often be used to reconstruct desert evolution. Previous studies of desert evolution in Asia are mainly concentrated in northwest China and the China Loess Plateau, and little is known about long-term desert evolution in east China. In this study, we selected the Sishijiazi loess section in the Chifeng area in northeast China to study the long-term evolution of the desert in east China. A high-resolution magnetostratigraphy combined with optically stimulated luminescence dating indicated that the age of the section base is approximately 1.02 Ma. The Brunhes-Matuyama boundary is at the depth of 39.8 m in loess unit L8, and the upper boundary of the Jaramillo Subchron is at the depth of 60.8 m in paleosol S10. The results of grain-size analysis indicate a coarsening grain-size trend in the past 1.0 Ma. In addition, based on grain-size variations, the desert evolution in east China since ∼1.0 Ma can be divided into three stages: stability from 1.0 to 0.8 Ma, desert recession from 0.8 to 0.5 Ma, and gradual expansion since 0.5 Ma. Our results further indicate that the evolution of desert in east China was mainly controlled by changes in global ice volume, and that the uplift of the Tibetan Plateau may have had an additional effect.

Morphological and behavioral evidence of Batesian mimicry in nestlings of a lowland Amazonian bird.

PubMed

Londoño, Gustavo A; García, Duván A; Sánchez Martínez, Manuel A

2015-01-01

Because predation is the main cause of avian nest failure, selection should favor strategies that reduce the probability of nest predation. We describe apparent Batesian mimicry in the morphology and behavior of a Laniocera hypopyrra nestling. On hatching, the nestling had a distinctive bright orange color and modified feathers all over its body, and 6 days after hatching, it started to move its head very slowly from side to side (in a "caterpillar" movement) when disturbed. These traits gave it a resemblance to a hairy, aposematic caterpillar. This species has a long nestling period for its size (20 days), perhaps due to slow provisioning rates (about one feeding per hour). We argue that the slow growth rate, combined with high nest predation, favors the evolution of antipredation mechanisms such as the unique morphological and behavioral characteristics of L. hypopyrra nestlings.

Bioinspired, cysteamine-catalyzed co-silicification of (1H, 1H, 2H, 2HPerfluorooctyl) triethoxysilane and tetraethyl orthosilicate: formation of superhydrophobic surfaces.

PubMed

Park, Ji Hun; Kim, Ji Yup; Cho, Woo Kyung; Choi, Insung S

2014-03-01

Bioinspired silicification attracts a great deal of interest because of its physiologically relevant, mild conditions for hydrolysis and condensation of silica precursors, which makes the bioinspired approach superior to the conventional sol–gel process, particularly when dealing with biological entities. However, the morphological control of silica structures with incorporation of functional groups in the bioinspired silicilication has been unexplored. In this work, we co-silicificated (1H, 1H, 2H, 2H-perfluorooctyl)triethoxysilane and tetraethyl orthosilicate to investigate the morphological evolution of fluorinated silica structures in the cetyltrimethylammonium bromide-mediated, cysteamine-catalyzed silicification. The generated micrometer-long wormlike and spherical silica structures display superhydrophobicity after film formation. Interestingly, the measurement of dynamic water contact angles shows that the morphological difference leads to a different wetting state, either the self-cleaning or the pinning state of the superhydrophobic surface.

Holocene evolution of Apalachicola Bay, Florida

USGS Publications Warehouse

Osterman, Lisa E.; Twichell, David C.

2011-01-01

A program of geophysical mapping and vibracoring was conducted in 2007 to better understand the geologic evolution of Apalachicola Bay and its response to sea-level rise. A detailed geologic history could help better understand how this bay may respond to both short-term (for example, storm surge) and long-term sea-level rise. The results of this study were published (Osterman and others, 2009) as part of a special issue of Geo-Marine Letters that documents early results from the Northern Gulf of Mexico (NGOM) Ecosystem Change and Hazard Susceptibility Project.

Rates of morphological evolution, asymmetry and morphological integration of shell shape in scallops.

PubMed

Sherratt, Emma; Serb, Jeanne M; Adams, Dean C

2017-12-08

Rates of morphological evolution vary across different taxonomic groups, and this has been proposed as one of the main drivers for the great diversity of organisms on Earth. Of the extrinsic factors pertaining to this variation, ecological hypotheses feature prominently in observed differences in phenotypic evolutionary rates across lineages. But complex organisms are inherently modular, comprising distinct body parts that can be differentially affected by external selective pressures. Thus, the evolution of trait covariation and integration in modular systems may also play a prominent role in shaping patterns of phenotypic diversity. Here we investigate the role ecological diversity plays in morphological integration, and the tempo of shell shape evolution and of directional asymmetry in bivalved scallops. Overall, the shape of both valves and the magnitude of asymmetry of the whole shell (difference in shape between valves) are traits that are evolving fast in ecomorphs under strong selective pressures (gliders, recessers and nestling), compared to low rates observed in other ecomorphs (byssal-attaching, free-living and cementing). Given that different parts of an organism can be under different selective pressures from the environment, we also examined the degree of evolutionary integration between the valves as it relates to ecological shifts. We find that evolutionary morphological integration is consistent and surprisingly high across species, indicating that while the left and right valves of a scallop shell are diversifying in accordance with ecomorphology, they are doing so in a concerted fashion. Our study on scallops adds another strong piece of evidence that ecological shifts play an important role in the tempo and mode of morphological evolution. Strong selective pressures from the environment, inferred from the repeated evolution of distinct ecomorphs, have influenced the rate of morphological evolution in valve shape and the magnitude of asymmetry between valves. Our observation that morphological integration of the valves making up the shell is consistently strong suggests tight developmental pathways are responsible for the concerted evolution of these structures while environmental pressures are driving whole shell shape. Finally, our study shows that directional asymmetry in shell shape among species is an important aspect of scallop macroevolution.

Evolution of Devonian carbonate-shelf margin, Nevada

USGS Publications Warehouse

Morrow, J.R.; Sandberg, C.A.

2008-01-01

The north-trending, 550-km-long Nevada segment of the Devonian carbonate-shelf margin, which fringed western North America, evidences the complex interaction of paleotectonics, eustasy, biotic changes, and bolide impact-related influences. Margin reconstruction is complicated by mid-Paleozoic to Paleogene compressional tectonics and younger extensional and strike-slip faulting. Reports published during the past three decades identify 12 important events that influenced development of shelf-margin settings; in chronological order, these are: (1) Early Devonian inheritance of Silurian stable shelf inargin, (2) formation of Early to early Middle 'Devonian shelf-margin basins, (3) propradation of later Middle Devonian shelf margin, (4) late Middle Devonian Taghanic ondap and continuing long-term Frasnian transgression, (5) initiation of latest Middle Devonian to early Frasnian proto-Antler orogenic forebulge, (6) mid-Frasnian Alamo Impact, (7) accelerated development of proto-Antler forebulge and backbulge Pilot basin, (8) global late Frasnian sentichatovae sea-level rise, (9) end-Frasnian sea-level fluctuations and ensuing mass extinction, (10) long-term Famennian regression and continept-wide erosion, (11) late Famennian emergence: of Ahtler orogenic highlands, and (12) end-Devonian eustatic sea-level fall. Although of considerable value for understanding facies relationships and geometries, existing standard carbonate platform-margin models developed for passive settings else-where do not adequately describe the diverse depositional and, structural settings along the Nevada Devonian platform margin. Recent structural and geochemical studies suggest that the Early to Middle Devonian-shelf-margin basins may have been fault-bound and controlled by inherited Precambrian structure. Subsequently, the migrating latest Middle to Late Devonian Antler orogenic forebulge exerted a dominant control on shelf-margin position, morphology, and sedimentation. ??Geological Society of America.

The Glyphosate-Based Herbicide Roundup Does not Elevate Genome-Wide Mutagenesis of Escherichia coli.

PubMed

Tincher, Clayton; Long, Hongan; Behringer, Megan; Walker, Noah; Lynch, Michael

2017-10-05

Mutations induced by pollutants may promote pathogen evolution, for example by accelerating mutations conferring antibiotic resistance. Generally, evaluating the genome-wide mutagenic effects of long-term sublethal pollutant exposure at single-nucleotide resolution is extremely difficult. To overcome this technical barrier, we use the mutation accumulation/whole-genome sequencing (MA/WGS) method as a mutagenicity test, to quantitatively evaluate genome-wide mutagenesis of Escherichia coli after long-term exposure to a wide gradient of the glyphosate-based herbicide (GBH) Roundup Concentrate Plus. The genome-wide mutation rate decreases as GBH concentration increases, suggesting that even long-term GBH exposure does not compromise the genome stability of bacteria. Copyright © 2017 Tincher et al.

Solid transport in mountain rivers: monitoring techniques and long term assessment as flood prevention tools

NASA Astrophysics Data System (ADS)

Longoni, Laura; Brambilla, Davide; Ivanov, Vladislav; Messa, Giacomo; Veronelli, Andrea; Radice, Alessio; Papini, Monica

2017-04-01

Floods are calamitous phenomena with an ever-increasing frequency around the globe, that often result in socio-economic damage and casualties. The role of the solid fraction in the river dynamic has been widely debated in the last decade and its importance is recognized as critical and not negligible in flood simulations as it has been evidenced that the severity of an event is often the result of the coupling of a flood wave with elevated solid transport rates. Nevertheless, assessing the quantity of sediment mobilized in a particular event is not feasible without a long term analysis of the river's dynamics and its morphological evolution since it is defined by past events. This work is focused on the techniques to improve knowledge about sediment production and transport through hydrological networks as a necessary component of a wise flood prevention planning. In particular, a multidisciplinary approach that combines hydraulic and geological knowledge is required in order to understand the evolution of the river sediment and how it will influence the following critical event. The methods are presented through a case study in Italy where a series of different approaches have been integrated to gain a comprehensive understanding of the problem: the sediment movement has been studied by a Eulerian as well as a Lagrangian approaches while hydraulic properties of the stream have been measured. The research started with an attempt to monitor sediment movements: in June 2016 300 sample pebbles, equipped with RFID (Radio Frequency IDentification) transponders, have been deployed in the river and tracked after every major rainfall event. The obtained data-set has been combined with a morphological analysis and a river flow discharge computed through PIV (Particle Image Velocimetry) method in order to identify the relation between a given rainfall event and sediment transport. Moreover, critical sediment size has been estimated from field data using three approaches: two experimental performed in situ and one analytical using hydraulic modelling. A good correlation between the results of these approaches has been obtained, while the results of the solid transport analysis suggest that the migration of sediments appears to be affected to a large extent by the river bed morphology in addition to the physical properties of the pebbles. Finally, a control section has been set up in a sedimentation basin which limits the further sediment migration to the downstream end of the river. Therefore, it was considered the perfect point to measure the final solid discharge of an event. Several bathymetric campaigns have been carried out to assess the gross quantity of material discharged in the pool. The use of a wireless Eco sounder has been tested along with a conventional GPR (Ground Penetrating Radar) in order to investigate the applicability of a low-cost tool for bathymetry survey in a fast and reliable way.

Hippocampal Astrocytes in Migrating and Wintering Semipalmated Sandpiper Calidris pusilla.

PubMed

Carvalho-Paulo, Dario; de Morais Magalhães, Nara G; de Almeida Miranda, Diego; Diniz, Daniel G; Henrique, Ediely P; Moraes, Isis A M; Pereira, Patrick D C; de Melo, Mauro A D; de Lima, Camila M; de Oliveira, Marcus A; Guerreiro-Diniz, Cristovam; Sherry, David F; Diniz, Cristovam W P

2017-01-01

Seasonal migratory birds return to the same breeding and wintering grounds year after year, and migratory long-distance shorebirds are good examples of this. These tasks require learning and long-term spatial memory abilities that are integrated into a navigational system for repeatedly locating breeding, wintering, and stopover sites. Previous investigations focused on the neurobiological basis of hippocampal plasticity and numerical estimates of hippocampal neurogenesis in birds but only a few studies investigated potential contributions of glial cells to hippocampal-dependent tasks related to migration. Here we hypothesized that the astrocytes of migrating and wintering birds may exhibit significant morphological and numerical differences connected to the long-distance flight. We used as a model the semipalmated sandpiper Calidris pusilla , that migrates from northern Canada and Alaska to South America. Before the transatlantic non-stop long-distance component of their flight, the birds make a stopover at the Bay of Fundy in Canada. To test our hypothesis, we estimated total numbers and compared the three-dimensional (3-D) morphological features of adult C. pusilla astrocytes captured in the Bay of Fundy ( n = 249 cells) with those from birds captured in the coastal region of Bragança, Brazil, during the wintering period ( n = 250 cells). Optical fractionator was used to estimate the number of astrocytes and for 3-D reconstructions we used hierarchical cluster analysis. Both morphological phenotypes showed reduced morphological complexity after the long-distance non-stop flight, but the reduction in complexity was much greater in Type I than in Type II astrocytes. Coherently, we also found a significant reduction in the total number of astrocytes after the transatlantic flight. Taken together these findings suggest that the long-distance non-stop flight altered significantly the astrocytes population and that morphologically distinct astrocytes may play different physiological roles during migration.

Plasma-Assisted Growth of Silicon Nanowires by Sn Catalyst: Step-by-Step Observation

NASA Astrophysics Data System (ADS)

Tang, Jian; Maurice, Jean-Luc; Chen, Wanghua; Misra, Soumyadeep; Foldyna, Martin; Johnson, Erik V.; Roca i Cabarrocas, Pere

2016-10-01

A comprehensive study of the silicon nanowire growth process has been carried out. Silicon nanowires were grown by plasma-assisted-vapor-solid method using tin as a catalyst. We have focused on the evolution of the silicon nanowire density, morphology, and crystallinity. For the first time, the initial growth stage, which determines the nanowire (NW) density and growth direction, has been observed step by step. We provide direct evidence of the merging of Sn catalyst droplets and the formation of Si nanowires during the first 10 s of growth. We found that the density of Sn droplets decreases from 9000 Sn droplets/μm2 to 2000 droplets/μm2 after just 10 s of growth. Moreover, the long and straight nanowire density decreases from 170/μm2 after 2 min of growth to less than 10/μm2 after 90 min. This strong reduction in nanowire density is accompanied by an evolution of their morphology from cylindrical to conical, then to bend conical, and finally, to a bend inverted conical shape. Moreover, the changes in the crystalline structure of nanowires are from (i) monocrystalline to (ii) monocrystalline core/defective crystalline shell and then to (iii) monocrystalline core/defective crystalline shell/amorphous shell. The evolutions of NW properties have been explained in detail.

Long-term conditioning of deep-seated rockslides in deglaciated valleys: the Spriana case study

NASA Astrophysics Data System (ADS)

Agliardi, Federico; Crosta, Giovanni B.

2015-04-01

Deep-seated rockslides in alpine valleys evolve over long time under the action of multiple triggers. Early Warning based on monitoring is often the only effective approach to cope with these landslides, but it requires an improved understanding of mechanisms interplaying over long time. Deep-seated rockslides are often characterized by long-term 'creep' and seasonal displacement components, contributing to measured displacement patterns which are often modelled as rockslide responses to hydrologic perturbations. Although this hydro-mechanical modelling approach fits the behaviour of disrupted rockslide masses with well-developed shear zones, it is often insufficient to explain the initial onset and the long-term components of creep movements of deep-seated rockslides. This outlines the need to link long-term evolution of rock slopes and their sensitivity to triggers. We discuss the Spriana rockslide, affecting the steep left-hand flank of Val Malenco (italian Central Alps). Documented instabilities date back to 1912, whereas the rockslide underwent major acceleration stages in 1960 and 1977-78 and later minor reactivations. We reviewed a large amount of data collected since 1978 by extensive geotechnical site investigation (borehole drilling, exploratory adits, and seismic refraction) and monitoring activities (ground surface and deep displacements, pore pressures) motivated by potential catastrophic collapse threatening the city of Sondrio area. We performed rock mass characterization based on laboratory studies on intact rock samples, field surveys and drillcore logging. These data allowed re-evaluating the geological model of the Spriana rockslide, which is a compound slide of up to 50 Mm3 of slope debris and fractured gneiss, with multiple shear failure zones up to 90 m deep. Two main scarps developed in different stages, suggesting progressive failure processes. The rockslide creeps at slow rates of 0.4-3 cm/a, and undergoes acceleration stages (weeks to months) during increased water recharge periods. Heavily fractured rock masses occur below rockslide base up to 150 m in depth, suggesting extensive rock mass damage pre-dating rockslide onset. Groundwater monitoring shows that this fractured layer hosts a perched water table characterized by annual fluctuations up to 3 m. To gain insights in the long-term slope evolution we performed 2D Finite-Element multi-stage stress-strain and seepage modelling, accounting for post-LGM deglaciation, damage and related changes in slope strength and hydrology. Results validated using investigation data show that rockslide onset would have been unlikely without the strong preconditioning of long-term damage related to deglaciation. This led to a two-layer hydro-mechanical slope differentiation, with a fractured upper layer hosting a perched water table that favoured rockslide onset. Once structured, the rockslide became more sensitive to short-term hydrologic triggers, with displacement rates increasing in response to groundwater recharge related to critical values of antecedent (7 to 30 days) rainfall. Our results outline the importance of accounting for long-term slope evolution when dealing with rockslides evolving over 102-103 year timescales, and point to the need of modelling approaches able to relate changing hydro-mechanical properties of slopes to long-term damage processes.

Changes in the central nervous system during long-duration space flight: implications for neuro-imaging

NASA Astrophysics Data System (ADS)

Newberg, A. B.; Alavi, A.

The purpose of this paper is to review the potential functional and morphological effects of long duration space flight on the human central nervous system (CNS) and how current neuroimaging techniques may be utilized to study these effects. It must be determined if there will be any detrimental changes to the CNS from long term exposure to the space environment if human beings are to plan interplanetary missions or establish permanent space habitats. Research to date has focused primarily on the short term changes in the CNS as the result of space flight. The space environment has many factors such as weightlessness, electromagnetic fields, and radiation, that may impact upon the function and structure of the CNS. CNS changes known to occur during and after long term space flight include neurovestibular disturbances, cephalic fluid shifts, alterations in sensory perception, changes in proprioception, psychological disturbances, and cognitive changes. Animal studies have shown altered plasticity of the neural cytoarchitecture, decreased neuronal metabolism in the hypothalamus, and changes in neurotransmitter concentrations. Recent progress in the ability to study brain morphology, cerebral metabolism, and neurochemistry in vivo in the human brain would provide ample opportunity to investigate many of the changes that occur in the CNS as a result of space flight. These methods include positron emission tomography (PET), single photon emission computed tomography (SPECT), and magnetic resonance imaging (MRI).

Morphological rates of angiosperm seed size evolution.

PubMed

Sims, Hallie J

2013-05-01

The evolution of seed size among angiosperms reflects their ecological diversification in a complex fitness landscape of life-history strategies. The lineages that have evolved seeds beyond the upper and lower boundaries that defined nonflowering seed plants since the Paleozoic are more dispersed across the angiosperm phylogeny than would be expected under a neutral model of phenotypic evolution. Morphological rates of seed size evolution estimated for 40 clades based on 17,375 species ranged from 0.001 (Garryales) to 0.207 (Malvales). Comparative phylogenetic analysis indicated that morphological rates are not associated with the clade's seed size but are negatively correlated with the clade's position in the overall distribution of angiosperm seed sizes; clades with seed sizes closer to the angiosperm mean had significantly higher morphological rates than clades with extremely small or extremely large seeds. Likewise, per-clade taxonomic diversification rates are not associated with the seed size of the clade but with where the clade falls within the angiosperm seed size distribution. These results suggest that evolutionary rates (morphological and taxonomic) are elevated in densely occupied regions of the seed morphospace relative to lineages whose ecophenotypic innovations have moved them toward the edges. © 2013 The Author(s). Evolution © 2013 The Society for the Study of Evolution.

DaDyn-RS: a tool for the time-dependent simulation of damage, fluid pressure and long-term instability in alpine rock slopes

NASA Astrophysics Data System (ADS)

Riva, Federico; Agliardi, Federico; Amitrano, David; Crosta, Giovanni B.

2017-04-01

Large mountain slopes in alpine environments undergo a complex long-term evolution from glacial to postglacial environments, through a transient period of paraglacial readjustment. During and after this transition, the interplay among rock strength, topographic relief, and morpho-climatic drivers varying in space and time can lead to the development of different types of slope instability, from sudden catastrophic failures to large, slow, long-lasting yet potentially catastrophic rockslides. Understanding the long-term evolution of large rock slopes requires accounting for the time-dependence of deglaciation unloading, permeability and fluid pressure distribution, displacements and failure mechanisms. In turn, this is related to a convincing description of rock mass damage processes and to their transition from a sub-critical (progressive failure) to a critical (catastrophic failure) character. Although mechanisms of damage occurrence in rocks have been extensively studied in the laboratory, the description of time-dependent damage under gravitational load and variable external actions remains difficult. In this perspective, starting from a time-dependent model conceived for laboratory rock deformation, we developed Dadyn-RS, a tool to simulate the long-term evolution of real, large rock slopes. Dadyn-RS is a 2D, FEM model programmed in Matlab, which combines damage and time-to-failure laws to reproduce both diffused damage and strain localization meanwhile tracking long-term slope displacements from primary to tertiary creep stages. We implemented in the model the ability to account for rock mass heterogeneity and property upscaling, time-dependent deglaciation, as well as damage-dependent fluid pressure occurrence and stress corrosion. We first tested DaDyn-RS performance on synthetic case studies, to investigate the effect of the different model parameters on the mechanisms and timing of long-term slope behavior. The model reproduces complex interactions between topography, deglaciation rate, mechanical properties and fluid pressure occurrence, resulting in different kinematics, damage patterns and timing of slope instabilities. We assessed the role of groundwater on slope damage and deformation mechanisms by introducing time-dependent pressure cycling within simulations. Then, we applied DaDyn-RS to real slopes located in the Italian Central Alps, affected by an active rockslide and a Deep Seated Gravitational Slope Deformation, respectively. From Last Glacial Maximum to present conditions, our model allows reproducing in an explicitly time-dependent framework the progressive development of damage-induced permeability, strain localization and shear band differentiation at different times between the Lateglacial period and the Mid-Holocene climatic transition. Different mechanisms and timings characterize different styles of slope deformations, consistently with available dating constraints. DaDyn-RS is able to account for different long-term slope dynamics, from slow creep to the delayed transition to fast-moving rockslides.

Water soluble two-photon fluorescent organic probes for long-term imaging of lysosomes in live cells and tumor spheroids.

PubMed

Kumari, Pratibha; Verma, Sanjay K; Mobin, Shaikh M

2018-01-11

The morphological alteration of lysosomes is a powerful indicator of various pathological disorders. In this regard, we have designed and synthesized a new water soluble fluorescent Schiff-base ligand (L-lyso) containing two hydroxyl groups. L-lyso exhibits excellent two-photon properties with tracking of lysosomes in live cells as well as in 3D tumor spheroids. Furthermore, it can label lysosomes for more than 3 days. Thus, L-lyso has an edge over the commercially available expensive LysoTracker probes and also over other reported probes in terms of its long-term imaging, water solubility and facile synthesis.

Emerging principles of regulatory evolution.

PubMed

Prud'homme, Benjamin; Gompel, Nicolas; Carroll, Sean B

2007-05-15

Understanding the genetic and molecular mechanisms governing the evolution of morphology is a major challenge in biology. Because most animals share a conserved repertoire of body-building and -patterning genes, morphological diversity appears to evolve primarily through changes in the deployment of these genes during development. The complex expression patterns of developmentally regulated genes are typically controlled by numerous independent cis-regulatory elements (CREs). It has been proposed that morphological evolution relies predominantly on changes in the architecture of gene regulatory networks and in particular on functional changes within CREs. Here, we discuss recent experimental studies that support this hypothesis and reveal some unanticipated features of how regulatory evolution occurs. From this growing body of evidence, we identify three key operating principles underlying regulatory evolution, that is, how regulatory evolution: (i) uses available genetic components in the form of preexisting and active transcription factors and CREs to generate novelty; (ii) minimizes the penalty to overall fitness by introducing discrete changes in gene expression; and (iii) allows interactions to arise among any transcription factor and downstream CRE. These principles endow regulatory evolution with a vast creative potential that accounts for both relatively modest morphological differences among closely related species and more profound anatomical divergences among groups at higher taxonomical levels.

The Pace of Cultural Evolution

PubMed Central

Perreault, Charles

2012-01-01

Today, humans inhabit most of the world’s terrestrial habitats. This observation has been explained by the fact that we possess a secondary inheritance mechanism, culture, in addition to a genetic system. Because it is assumed that cultural evolution occurs faster than biological evolution, humans can adapt to new ecosystems more rapidly than other animals. This assumption, however, has never been tested empirically. Here, I compare rates of change in human technologies to rates of change in animal morphologies. I find that rates of cultural evolution are inversely correlated with the time interval over which they are measured, which is similar to what is known for biological rates. This correlation explains why the pace of cultural evolution appears faster when measured over recent time periods, where time intervals are often shorter. Controlling for the correlation between rates and time intervals, I show that (1) cultural evolution is faster than biological evolution; (2) this effect holds true even when the generation time of species is controlled for; and (3) culture allows us to evolve over short time scales, which are normally accessible only to short-lived species, while at the same time allowing for us to enjoy the benefits of having a long life history. PMID:23024804

New Technology Trends in Education: Seven Years of Forecasts and Convergence

ERIC Educational Resources Information Center

Martin, Sergio; Diaz, Gabriel; Sancristobal, Elio; Gil, Rosario; Castro, Manuel; Peire, Juan

2011-01-01

Each year since 2004, a new Horizon Report has been released. Each edition attempts to forecast the most promising technologies likely to impact on education along three horizons: the short term (the year of the report), the mid-term (the next 2 years) and the long term (the next 4 years). This paper analyzes the evolution of technology trends…

Evolution in coyotes (Canis latrans) in response to the megafaunal extinctions

PubMed Central

Meachen, Julie A.; Samuels, Joshua X.

2012-01-01

Living coyotes modify their behavior in the presence of larger carnivores, such as wolves. However, little is known about the effects of competitor presence or absence on morphological change in coyotes or wolves over long periods of time. We examined the evolution of coyotes and wolves through time from the late Pleistocene, during which many large carnivorous species coexisted as predators and competitors, to the Recent; this allowed us to investigate evolutionary changes in these species in response to climate change and megafaunal extinctions at the end of the Pleistocene. We measured postcranial skeletal morphologies of wolves (Canis lupus) and coyotes (C. latrans) from Pleistocene-aged tar deposits, as well as early, mid, and recent Holocene populations of both. We found few morphological differences between Pleistocene and Holocene wolf populations. Conversely, we found many differences in coyotes: Pleistocene coyotes were larger and more robust than Holocene populations. However, within 1,000 y of the megafaunal extinctions, coyotes are morphologically indistinguishable from modern populations. We cannot attribute these differences directly to climate change because modern coyotes do not follow Bergmann's rule, which states body size increases with decreasing temperature. Instead, we suggest that Pleistocene coyotes may have been larger and more robust in response to larger competitors and a larger-bodied prey base. Although we cannot separate competition from predator-prey interactions, this study indicates that the effects of biotic interactions can be detected in the fossil record. PMID:22371581

Functional constraints on tooth morphology in carnivorous mammals

PubMed Central

2012-01-01

Background The range of potential morphologies resulting from evolution is limited by complex interacting processes, ranging from development to function. Quantifying these interactions is important for understanding adaptation and convergent evolution. Using three-dimensional reconstructions of carnivoran and dasyuromorph tooth rows, we compared statistical models of the relationship between tooth row shape and the opposing tooth row, a static feature, as well as measures of mandibular motion during chewing (occlusion), which are kinetic features. This is a new approach to quantifying functional integration because we use measures of movement and displacement, such as the amount the mandible translates laterally during occlusion, as opposed to conventional morphological measures, such as mandible length and geometric landmarks. By sampling two distantly related groups of ecologically similar mammals, we study carnivorous mammals in general rather than a specific group of mammals. Results Statistical model comparisons demonstrate that the best performing models always include some measure of mandibular motion, indicating that functional and statistical models of tooth shape as purely a function of the opposing tooth row are too simple and that increased model complexity provides a better understanding of tooth form. The predictors of the best performing models always included the opposing tooth row shape and a relative linear measure of mandibular motion. Conclusions Our results provide quantitative support of long-standing hypotheses of tooth row shape as being influenced by mandibular motion in addition to the opposing tooth row. Additionally, this study illustrates the utility and necessity of including kinetic features in analyses of morphological integration. PMID:22899809

Simulation of the evolution of root water foraging strategies in dry and shallow soils

PubMed Central

Renton, Michael; Poot, Pieter

2014-01-01

Background and Aims The dynamic structural development of plants can be seen as a strategy for exploiting the limited resources available within their environment, and we would expect that evolution would lead to efficient strategies that reduce costs while maximizing resource acquisition. In particular, perennial species endemic to habitats with shallow soils in seasonally dry environments have been shown to have a specialized root system morphology that may enhance access to water resources in the underlying rock. This study aimed to explore these hypotheses by applying evolutionary algorithms to a functional–structural root growth model. Methods A simulation model of a plant's root system was developed, which represents the dynamics of water uptake and structural growth. The model is simple enough for evolutionary optimization to be computationally feasible, yet flexible enough to allow a range of structural development strategies to be explored. The model was combined with an evolutionary algorithm in order to investigate a case study habitat with a highly heterogeneous distribution of resources, both spatially and temporally – the situation of perennial plants occurring on shallow soils in seasonally dry environments. Evolution was simulated under two contrasting fitness criteria: (1) the ability to find wet cracks in underlying rock, and (2) maximizing above-ground biomass. Key Results The novel approach successfully resulted in the evolution of more efficient structural development strategies for both fitness criteria. Different rooting strategies evolved when different criteria were applied, and each evolved strategy made ecological sense in terms of the corresponding fitness criterion. Evolution selected for root system morphologies which matched those of real species from corresponding habitats. Conclusions Specialized root morphology with deeper rather than shallower lateral branching enhances access to water resources in underlying rock. More generally, the approach provides insights into both evolutionary processes and ecological costs and benefits of different plant growth strategies. PMID:24651371

Environment overwhelms both nature and nurture in a model spin glass

NASA Astrophysics Data System (ADS)

Middleton, A. Alan; Yang, Jie

We are interested in exploring what information determines the particular history of the glassy long term dynamics in a disordered material. We study the effect of initial configurations and the realization of stochastic dynamics on the long time evolution of configurations in a two-dimensional Ising spin glass model. The evolution of nearest neighbor correlations is computed using patchwork dynamics, a coarse-grained numerical heuristic for temporal evolution. The dependence of the nearest neighbor spin correlations at long time on both initial spin configurations and noise histories are studied through cross-correlations of long-time configurations and the spin correlations are found to be independent of both. We investigate how effectively rigid bond clusters coarsen. Scaling laws are used to study the convergence of configurations and the distribution of sizes of nearly rigid clusters. The implications of the computational results on simulations and phenomenological models of spin glasses are discussed. We acknowledge NSF support under DMR-1410937 (CMMT program).

Geologic framework of the northern North Carolina, USA inner continental shelf and its influence on coastal evolution

USGS Publications Warehouse

Thieler, E. Robert; Foster, David S.; Himmelstoss, Emily A.; Mallinson, David J.

2013-01-01

The inner continental shelf off the northern Outer Banks of North Carolina was mapped using sidescan sonar, interferometric swath bathymetry, and high-resolution chirp and boomer subbottom profiling systems. We use this information to describe the shallow stratigraphy, reinterpret formation mechanisms of some shoal features, evaluate local relative sea-levels during the Late Pleistocene, and provide new constraints, via recent bedform evolution, on regional sediment transport patterns. The study area is approximately 290 km long by 11 km wide, extending from False Cape, Virginia to Cape Lookout, North Carolina, in water depths ranging from 6 to 34 m. Late Pleistocene sedimentary units comprise the shallow geologic framework of this region and determine both the morphology of the inner shelf and the distribution of sediment sources and sinks. We identify Pleistocene sedimentary units beneath Diamond Shoals that may have provided a geologic template for the location of modern Cape Hatteras and earlier paleo-capes during the Late Pleistocene. These units indicate shallow marine deposition 15–25 m below present sea-level. The uppermost Pleistocene unit may have been deposited as recently as Marine Isotope Stage 3, although some apparent ages for this timing may be suspect. Paleofluvial valleys incised during the Last Glacial Maximum traverse the inner shelf throughout the study area and dissect the Late Pleistocene units. Sediments deposited in the valleys record the Holocene transgression and provide insight into the evolutionary history of the barrier-estuary system in this region. The relationship between these valleys and adjacent shoal complexes suggests that the paleo-Roanoke River did not form the Albemarle Shelf Valley complex as previously proposed; a major fluvial system is absent and thus makes the formation of this feature enigmatic. Major shoal features in the study area show mobility at decadal to centennial timescales, including nearly a kilometer of shoal migration over the past 134 yr. Sorted bedforms occupy ~ 1000 km2 of seafloor in Raleigh Bay, and indicate regional sediment transport patterns between Capes Hatteras and Lookout that help explain long-term sediment accumulation and morphologic development. Portions of the inner continental shelf with relatively high sediment abundance are characterized by shoals and shoreface-attached ridges, and where sediment is less abundant, the seafloor is dominated by sorted bedforms. These relationships are also observed in other passive margin settings, suggesting a continuum of shelf morphology that may have broad application for interpreting inner shelf sedimentation patterns.

Predicting evolutionary rescue via evolving plasticity in stochastic environments

PubMed Central

Baskett, Marissa L.

2016-01-01

Phenotypic plasticity and its evolution may help evolutionary rescue in a novel and stressful environment, especially if environmental novelty reveals cryptic genetic variation that enables the evolution of increased plasticity. However, the environmental stochasticity ubiquitous in natural systems may alter these predictions, because high plasticity may amplify phenotype–environment mismatches. Although previous studies have highlighted this potential detrimental effect of plasticity in stochastic environments, they have not investigated how it affects extinction risk in the context of evolutionary rescue and with evolving plasticity. We investigate this question here by integrating stochastic demography with quantitative genetic theory in a model with simultaneous change in the mean and predictability (temporal autocorrelation) of the environment. We develop an approximate prediction of long-term persistence under the new pattern of environmental fluctuations, and compare it with numerical simulations for short- and long-term extinction risk. We find that reduced predictability increases extinction risk and reduces persistence because it increases stochastic load during rescue. This understanding of how stochastic demography, phenotypic plasticity, and evolution interact when evolution acts on cryptic genetic variation revealed in a novel environment can inform expectations for invasions, extinctions, or the emergence of chemical resistance in pests. PMID:27655762

Evolution of continental-scale drainage in response to mantle dynamics and surface processes: An example from the Ethiopian Highlands

NASA Astrophysics Data System (ADS)

Sembroni, Andrea; Molin, Paola; Pazzaglia, Frank J.; Faccenna, Claudio; Abebe, Bekele

2016-05-01

Ethiopia offers an excellent opportunity to study the effects and linkage between mantle dynamics and surface processes on landscape evolution. The Ethiopian Highlands (NW Ethiopia), characterized by a huge basaltic plateau, is part of the African Superswell, a wide region of dynamically-supported anomalously high topography related to the rising of the Afar plume. The initiation and steadiness of dynamic support beneath Ethiopia has been explored in several studies. However the presence, role, and timing of dynamic support beneath Ethiopia and its relationship with continental flood basalts volcanism and surface processes are poorly defined. Here, we present a geomorphological analysis of the Ethiopian Highlands supplying new constraints on the evolution of river network. We investigated the general topographic features (filtered topography, swath profiles, local relief) and the river network (river longitudinal profiles) of the study area. We also apply a knickpoint celerity model in order to provide a chronological framework to the evolution of the river network. The results trace the long-term progressive capture of the Ethiopian Highlands drainage system and confirm the long-term dynamic support of the area, documenting its impact on the contrasting development of the Blue Nile and Tekeze basins.

Evolution of continental-scale drainage in response to mantle dynamics and surface processes: an example from the Ethiopian Highlands.

NASA Astrophysics Data System (ADS)

Sembroni, Andrea; Molin, Paola; Pazzaglia, Frank J.; Faccenna, Claudio; Abebe, Bekele

2016-04-01

Ethiopia offers an excellent opportunity to study the effects and linkage between mantle dynamics and surface processes on landscape evolution. The Ethiopian Highlands (NW Ethiopia), characterized by a huge basaltic plateau, is part of the African Superswell, a wide region of dynamically-supported anomalously high topography related to the rising of the Afar plume. The initiation and steadiness of dynamic support beneath Ethiopia has been explored in several studies. However the presence, role, and timing of dynamic support beneath Ethiopia and its relationship with continental flood basalts volcanism and surface processes are poorly defined. Here, we present a geomorphological analysis of the Ethiopian Highlands supplying new constrains on the evolution of river network. We investigated the general topographic features (filtered topography, swath profiles, local relief) and the river network (river longitudinal profiles) of the study area. We also apply a knickpoint celerity model in order to provide a chronological framework to the evolution of the river network. The results trace the long-term progressive capture of the Ethiopian Highlands drainage system and confirm the long-term dynamic support of the area, documenting its impact on the contrasting development of the Blue Nile and Tekeze basins.

Heliophysics: Evolving Solar Activity and the Climates of Space and Earth

NASA Astrophysics Data System (ADS)

Schrijver, Carolus J.; Siscoe, George L.

2010-09-01

Preface; 1. Interconnectedness in heliophysics Carolus J. Schrijver and George L. Siscoe; 2. Long-term evolution of magnetic activity of Sun-like stars Carolus J. Schrijver; 3. Formation and early evolution of stars and proto-planetary disks Lee W. Hartmann; 4. Planetary habitability on astronomical time scales Donald E. Brownlee; 5. Solar internal flows and dynamo action Mark S. Miesch; 6. Modeling solar and stellar dynamos Paul Charbonneau; 7. Planetary fields and dynamos Ulrich R. Christensen; 8. The structure and evolution of the 3D solar wind John T. Gosling; 9. The heliosphere and cosmic rays J. Randy Jokipii; 10. Solar spectral irradiance: measurements and models Judith L. Lean and Thomas N. Woods; 11. Astrophysical influences on planetary climate systems Juerg Beer; 12. Evaluating the drivers of Earth's climate system Thomas J. Crowley; 13. Ionospheres of the terrestrial planets Stanley C. Solomon; 14. Long-term evolution of the geospace climate Jan J. Sojka; 15. Waves and transport processes in atmospheres and oceans Richard L. Walterscheid; 16. Solar variability, climate, and atmospheric photochemistry Guy P. Brasseur, Daniel Marsch and Hauke Schmidt; Appendix I. Authors and editors; List of illustrations; List of tables; Bibliography; Index.

Heliophysics: Evolving Solar Activity and the Climates of Space and Earth

NASA Astrophysics Data System (ADS)

Schrijver, Carolus J.; Siscoe, George L.

2012-01-01

Preface; 1. Interconnectedness in heliophysics Carolus J. Schrijver and George L. Siscoe; 2. Long-term evolution of magnetic activity of Sun-like stars Carolus J. Schrijver; 3. Formation and early evolution of stars and proto-planetary disks Lee W. Hartmann; 4. Planetary habitability on astronomical time scales Donald E. Brownlee; 5. Solar internal flows and dynamo action Mark S. Miesch; 6. Modeling solar and stellar dynamos Paul Charbonneau; 7. Planetary fields and dynamos Ulrich R. Christensen; 8. The structure and evolution of the 3D solar wind John T. Gosling; 9. The heliosphere and cosmic rays J. Randy Jokipii; 10. Solar spectral irradiance: measurements and models Judith L. Lean and Thomas N. Woods; 11. Astrophysical influences on planetary climate systems Juerg Beer; 12. Evaluating the drivers of Earth's climate system Thomas J. Crowley; 13. Ionospheres of the terrestrial planets Stanley C. Solomon; 14. Long-term evolution of the geospace climate Jan J. Sojka; 15. Waves and transport processes in atmospheres and oceans Richard L. Walterscheid; 16. Solar variability, climate, and atmospheric photochemistry Guy P. Brasseur, Daniel Marsch and Hauke Schmidt; Appendix I. Authors and editors; List of illustrations; List of tables; Bibliography; Index.

Coupling SPH and thermochemical models of planets: Methodology and example of a Mars-sized body

NASA Astrophysics Data System (ADS)

Golabek, G. J.; Emsenhuber, A.; Jutzi, M.; Asphaug, E. I.; Gerya, T. V.

2018-02-01

Giant impacts have been suggested to explain various characteristics of terrestrial planets and their moons. However, so far in most models only the immediate effects of the collisions have been considered, while the long-term interior evolution of the impacted planets was not studied. Here we present a new approach, combining 3-D shock physics collision calculations with 3-D thermochemical interior evolution models. We apply the combined methods to a demonstration example of a giant impact on a Mars-sized body, using typical collisional parameters from previous studies. While the material parameters (equation of state, rheology model) used in the impact simulations can have some effect on the long-term evolution, we find that the impact angle is the most crucial parameter for the resulting spatial distribution of the newly formed crust. The results indicate that a dichotomous crustal pattern can form after a head-on collision, while this is not the case when considering a more likely grazing collision. Our results underline that end-to-end 3-D calculations of the entire process are required to study in the future the effects of large-scale impacts on the evolution of planetary interiors.

Electrocardiogram ST-Segment Morphology Delineation Method Using Orthogonal Transformations

PubMed Central

2016-01-01

Differentiation between ischaemic and non-ischaemic transient ST segment events of long term ambulatory electrocardiograms is a persisting weakness in present ischaemia detection systems. Traditional ST segment level measuring is not a sufficiently precise technique due to the single point of measurement and severe noise which is often present. We developed a robust noise resistant orthogonal-transformation based delineation method, which allows tracing the shape of transient ST segment morphology changes from the entire ST segment in terms of diagnostic and morphologic feature-vector time series, and also allows further analysis. For these purposes, we developed a new Legendre Polynomials based Transformation (LPT) of ST segment. Its basis functions have similar shapes to typical transient changes of ST segment morphology categories during myocardial ischaemia (level, slope and scooping), thus providing direct insight into the types of time domain morphology changes through the LPT feature-vector space. We also generated new Karhunen and Lo ève Transformation (KLT) ST segment basis functions using a robust covariance matrix constructed from the ST segment pattern vectors derived from the Long Term ST Database (LTST DB). As for the delineation of significant transient ischaemic and non-ischaemic ST segment episodes, we present a study on the representation of transient ST segment morphology categories, and an evaluation study on the classification power of the KLT- and LPT-based feature vectors to classify between ischaemic and non-ischaemic ST segment episodes of the LTST DB. Classification accuracy using the KLT and LPT feature vectors was 90% and 82%, respectively, when using the k-Nearest Neighbors (k = 3) classifier and 10-fold cross-validation. New sets of feature-vector time series for both transformations were derived for the records of the LTST DB which is freely available on the PhysioNet website and were contributed to the LTST DB. The KLT and LPT present new possibilities for human-expert diagnostics, and for automated ischaemia detection. PMID:26863140

Immediate and long-term effects in the hematopoietic system and the morphology of the respiratory system in experimental animals under chronic combined action of external gamma exposure and inhalation exposure.

NASA Astrophysics Data System (ADS)

Tatarkin, Sergey; Moukhamedieva, Lana; Aleksandr, Shafirkin; Barantseva, Maria; Ivanova, Svetlana

The need to solve hygiene problems valuation of environmental factors in the implementation of the projected manned interplanetary missions, determined the relevance of studying the effect of external gamma-irradiation with inhalation of mixtures of chemicals on the parameters of major critical body systems: hematopoiesis and respiratory (morphological and morphometric parameters) in the short and long periods. The study conducted on 504 male mice F1 (CBA × C57BL6) under chronic fractional gamma-irradiation (within 10 weeks at a total dose 350sGr) and then under inhalation by mixtures of chemicals in low concentrations. Duration of the experiment (124 days) and 90 -day recovery period. Displaying adaptive reorganization in hematopoietic system, which was characterized by a tension of regulatory systems of animals and by a proliferation of bone marrow cells and by dynamic changes in amount of lymphoid cells in peripheral blood, elevated levels of the antioxidant activity of red blood cells, and morphological manifestations of "incomplete recovery " of the spleen, which are retained in the recovery period. Morphological changes in the respiratory organs of animals testified about immunogenesis activation and development of structural changes as a chronic inflammatory process. Increase of fibrous connective tissue in the walls of the trachea, bronchus and lung, against reduction of loose fibrous connective tissue (more pronounced in respiratory parts of the respiratory system) in experimental animals, which may indicate a reduction of the functional reserves of the body and increase the risk of adverse long-term effects.

Long-term evolution of the force-free twisted magnetosphere of a magnetar

NASA Astrophysics Data System (ADS)

Akgün, T.; Cerdá-Durán, P.; Miralles, J. A.; Pons, J. A.

2017-12-01

We study the long-term quasi-steady evolution of the force-free magnetosphere of a magnetar coupled to its internal magnetic field. We find that magnetospheric currents can be maintained on long time-scales of the order of thousands of years. Meanwhile, the energy, helicity and twist stored in the magnetosphere all gradually increase over the course of this evolution, until a critical point is reached, beyond which a force-free magnetosphere cannot be constructed. At this point, some large-scale magnetospheric rearrangement, possibly resulting in an outburst or a flare, must occur, releasing a large fraction of the stored energy, helicity and twist. After that, the quasi-steady evolution should continue in a similar manner from the new initial conditions. The time-scale for reaching this critical point depends on the overall magnetic field strength and on the relative fraction of the toroidal field. The energy stored in the force-free magnetosphere is found to be up to ∼30 per cent larger than the corresponding vacuum energy. This implies that for a 1014 G field at the pole, the energy budget available for fast magnetospheric events is of the order of a few 1044 erg. The spin-down rate is estimated to increase by up to ∼60 per cent, since the dipole content in the magnetosphere is enhanced by the currents present there. A rough estimate of the braking index n reveals that it is systematically n < 3 for the most part of the evolution, consistent with actual measurements for pulsars and early estimates for several magnetars.

Transcriptomic and macroevolutionary evidence for phenotypic uncoupling between frog life history phases

PubMed Central

Wollenberg Valero, Katharina C.; Garcia-Porta, Joan; Rodríguez, Ariel; Arias, Mónica; Shah, Abhijeet; Randrianiaina, Roger Daniel; Brown, Jason L.; Glaw, Frank; Amat, Felix; Künzel, Sven; Metzler, Dirk; Isokpehi, Raphael D.; Vences, Miguel

2017-01-01

Anuran amphibians undergo major morphological transitions during development, but the contribution of their markedly different life-history phases to macroevolution has rarely been analysed. Here we generate testable predictions for coupling versus uncoupling of phenotypic evolution of tadpole and adult life-history phases, and for the underlying expression of genes related to morphological feature formation. We test these predictions by combining evidence from gene expression in two distantly related frogs, Xenopus laevis and Mantidactylus betsileanus, with patterns of morphological evolution in the entire radiation of Madagascan mantellid frogs. Genes linked to morphological structure formation are expressed in a highly phase-specific pattern, suggesting uncoupling of phenotypic evolution across life-history phases. This gene expression pattern agrees with uncoupled rates of trait evolution among life-history phases in the mantellids, which we show to have undergone an adaptive radiation. Our results validate a prevalence of uncoupling in the evolution of tadpole and adult phenotypes of frogs. PMID:28504275

Phylogenomics reveals extensive reticulate evolution in Xiphophorus fishes.

PubMed

Cui, Rongfeng; Schumer, Molly; Kruesi, Karla; Walter, Ronald; Andolfatto, Peter; Rosenthal, Gil G

2013-08-01

Hybridization is increasingly being recognized as a widespread process, even between ecologically and behaviorally divergent animal species. Determining phylogenetic relationships in the presence of hybridization remains a major challenge for evolutionary biologists, but advances in sequencing technology and phylogenetic techniques are beginning to address these challenges. Here we reconstruct evolutionary relationships among swordtails and platyfishes (Xiphophorus: Poeciliidae), a group of species characterized by remarkable morphological diversity and behavioral barriers to interspecific mating. Past attempts to reconstruct phylogenetic relationships within Xiphophorus have produced conflicting results. Because many of the 26 species in the genus are interfertile, these conflicts are likely due to hybridization. Using genomic data, we resolve a high-confidence species tree of Xiphophorus that accounts for both incomplete lineage sorting and hybridization. Our results allow us to reexamine a long-standing controversy about the evolution of the sexually selected sword in Xiphophorus, and demonstrate that hybridization has been strikingly widespread in the evolutionary history of this genus. © 2013 The Author(s). Evolution © 2013 The Society for the Study of Evolution.