SEMICIRCULAR-LIKE SECONDARY FLARE RIBBONS ASSOCIATED WITH A FAILED ERUPTION
DOE Office of Scientific and Technical Information (OSTI.GOV)
Zheng, R.; Korsós, M. B.; Erdélyi, R., E-mail: r.zheng@sheffield.ac.uk, E-mail: robertus@sheffield.ac.uk
Flare ribbons (FRs) are one of the most apparent signatures of solar flares and have been treated as an indicator of magnetic reconnection. Drawing upon the observations from the Solar Dynamics Observatory, we present semicircular-like secondary FRs (SFRs) of a C2.3 flare on 2013 June 19. Before the flare eruption, two bipoles in this core region subsequently emerged. Due to the interaction between the two bipoles, a tether-cutting eruption took place in the core region. The SFRs, surrounding the core region nearly simultaneously with the flare onset, were much weaker than the two normal FRs. Two ends of the SFRsmore » experienced a separation and extension movement, but the middle part of the SFRs hardly expanded outward. We find SFRs are closely associated with the footpoint brightenings of some small loops around the core region. The eruption was confined by transequatorial loops (TLs), which resulted in the plasma material falling in the north end of the TLs and remote brightenings showing up in the south end of the TLs. The disappearance of the faint (filament) material during the emergence of the SFRs could indicate another eruption. We conclude that two or more magnetic reconnections are involved in this event and propose that SFRs consisting of a small part of true FRs resulted from the second magnetic reconnection and bright footpoints of loop clusters likely heated by the main flare.« less
An Innovative Hybrid Loop-Pool SFR Design and Safety Analysis Methods: Today and Tomorrow
DOE Office of Scientific and Technical Information (OSTI.GOV)
Hongbin Zhang; Haihua Zhao; Vincent Mousseau
2008-04-01
Investment in commercial sodium cooled fast reactor (SFR) power plants will become possible only if SFRs achieve economic competitiveness as compared to light water reactors and other Generation IV reactors. Toward that end, we have launched efforts to improve the economics and safety of SFRs from the thermal design and safety analyses perspectives at Idaho National Laboratory. From the thermal design perspective, an innovative hybrid loop-pool SFR design has been proposed. This design takes advantage of the inherent safety of a pool design and the compactness of a loop design to further improve economics and safety. From the safety analysesmore » perspective, we have initiated an effort to develop a high fidelity reactor system safety code.« less
Alternative Splicing of MBD2 Supports Self-Renewal in Human Pluripotent Stem Cells
Lu, Yu; Loh, Yuin-Han; Li, Hu; Cesana, Marcella; Ficarro, Scott B.; Parikh, Jignesh R.; Salomonis, Nathan; Toh, Cheng-Xu Delon; Andreadis, Stelios T.; Luckey, C. John; Collins, James J.; Daley, George Q.; Marto, Jarrod A.
2014-01-01
Summary Alternative RNA splicing (AS) regulates proteome diversity, including isoform-specific expression of several pluripotency genes. Here, we integrated global gene expression and proteomic analyses and identified a molecular signature suggesting a central role for AS in maintaining human pluripotent stem cell (hPSC) self-renewal. We demonstrate the splicing factor SFRS2 is an OCT4 target gene required for pluripotency. SFRS2 regulates AS of the methyl-CpG-binding protein MBD2, whose isoforms play opposing roles in maintenance of, and reprogramming to, pluripotency. While both MDB2a and MBD2c are enriched at the OCT4 and NANOG promoters, MBD2a preferentially interacts with repressive NuRD chromatin remodeling factors and promotes hPSC differentiation, whereas overexpression of MBD2c enhances reprogramming of fibroblasts to pluripotency. The miR-301 and miR-302 families provide additional regulation by targeting SFRS2 and MDB2a. These data suggest that OCT4, SFRS2, and MBD2 participate in a positive feedback loop, regulating proteome diversity complexity in support of hPSC self-renewal and reprogramming. PMID:24813856
Research Progresses on Small Flux Ropes
NASA Astrophysics Data System (ADS)
Huang, J.; Liu, Y.; Peng, J.; Klecker, B.
2017-12-01
Small flux ropes (SFRs) have attracted much attention in recent years, but their origins are still debatable. In order to investigate their source regions and formation mechanisms, we present a case study and a statistical study in this work. First, we make a multi-spacecraft study of a SFR entrained by rolling back magnetic field lines around 1 AU. Such SFRs have only been seldom reported in the literature. This SFR was adjacent to a heliospheric plasma sheet (HPS), and they showed similar plasma signatures (except plasma beta), density ratio of alpha particle-to-proton (Nα/Np) and heavy ion ionization states, implying they may have a similar origin in the corona. The composition and the configuration of the rolling back magnetic field lines suggested this SFR should originate from the streamer belt through interchange reconnection. Combining the observations of STEREO and ACE, the SFR was shown to have an axis tilted to the ecliptic plane and the radius may vary with different spatial positions. In this study, we suggest interchange reconnection can play an important role for the origin of, at least, some SFRs and slow solar wind. Then, we make a statistical study of the distributions of iron average charge states (Q) in SFRs. Former studies on magnetic clouds classified the Q distributions into five types, i.e. type A to E. We investigate the SFRs, except "very small flux ropes", from 1998 to 2009, and find that type A cases are absent. Furthermore, we also try to identify their sources. Based on these analysis, we suppose the twist structures of solar corona originated SFRs are generally formed after their eruptions. But the SFRs that originate from interplanetary space may involve with complicate magnetic reconnection processes, which may result of much complicate Q distributions.
Irradiation Testing Vehicles for Fast Reactors from Open Test Assemblies to Closed Loops
DOE Office of Scientific and Technical Information (OSTI.GOV)
Sienicki, James J.; Grandy, Christopher
A review of irradiation testing vehicle approaches and designs that have been incorporated into past Sodium-Cooled Fast Reactors (SFRs) or envisioned for incorporation has been carried out. The objective is to understand the essential features of the approaches and designs so that they can inform test vehicle designs for a future U.S. Fast Test Reactor. Fast test reactor designs examined include EBR-II, FFTF, JOYO, BOR-60, PHÉNIX, JHR, and MBIR. Previous designers exhibited great ingenuity in overcoming design and operational challenges especially when the original reactor plant’s mission changed to an irradiation testing mission as in the EBRII reactor plant. Themore » various irradiation testing vehicles can be categorized as: Uninstrumented open assemblies that fit into core locations; Instrumented open test assemblies that fit into special core locations; Self-contained closed loops; and External closed loops. A special emphasis is devoted to closed loops as they are regarded as a very desirable feature of a future U.S. Fast Test Reactor. Closed loops are an important technology for irradiation of fuels and materials in separate controlled environments. The impact of closed loops on the design of fast reactors is also discussed in this report.« less
Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts.
Sanford, Jeremy R; Wang, Xin; Mort, Matthew; Vanduyn, Natalia; Cooper, David N; Mooney, Sean D; Edenberg, Howard J; Liu, Yunlong
2009-03-01
Metazoan genes are encrypted with at least two superimposed codes: the genetic code to specify the primary structure of proteins and the splicing code to expand their proteomic output via alternative splicing. Here, we define the specificity of a central regulator of pre-mRNA splicing, the conserved, essential splicing factor SFRS1. Cross-linking immunoprecipitation and high-throughput sequencing (CLIP-seq) identified 23,632 binding sites for SFRS1 in the transcriptome of cultured human embryonic kidney cells. SFRS1 was found to engage many different classes of functionally distinct transcripts including mRNA, miRNA, snoRNAs, ncRNAs, and conserved intergenic transcripts of unknown function. The majority of these diverse transcripts share a purine-rich consensus motif corresponding to the canonical SFRS1 binding site. The consensus site was not only enriched in exons cross-linked to SFRS1 in vivo, but was also enriched in close proximity to splice sites. mRNAs encoding RNA processing factors were significantly overrepresented, suggesting that SFRS1 may broadly influence the post-transcriptional control of gene expression in vivo. Finally, a search for the SFRS1 consensus motif within the Human Gene Mutation Database identified 181 mutations in 82 different genes that disrupt predicted SFRS1 binding sites. This comprehensive analysis substantially expands the known roles of human SR proteins in the regulation of a diverse array of RNA transcripts.
Asteroid spin-rate studies using large sky-field surveys
NASA Astrophysics Data System (ADS)
Chang, Chan-Kao; Lin, Hsing-Wen; Ip, Wing-Huen; Prince, Thomas A.; Kulkarni, Shrinivas R.; Levitan, David; Laher, Russ; Surace, Jason
2017-12-01
Eight campaigns to survey asteroid rotation periods have been carried out using the intermediate Palomar Transient Factory in the past 3 years. 2780 reliable rotation periods were obtained, from which we identified two new super-fast rotators (SFRs), (335433) 2005 UW163 and (40511) 1999 RE88, and 23 candidate SFRs. Along with other three known super-fast rotators, there are five known SFRs so far. Contrary to the case of rubble-pile asteroids (i.e., bounded aggregations by gravity only), an internal cohesion, ranging from 100 to 1000 Pa, is required to prevent these five SFRs from flying apart because of their super-fast rotations. This cohesion range is comparable with that of lunar regolith. However, some candidates of several kilometers in size require unusually high cohesion (i.e., a few thousands of Pa). Therefore, the confirmation of these kilometer-sized candidates can provide important information about asteroid interior structure. From the rotation periods we collected, we also found that the spin-rate limit of C-type asteroids, which has a lower bulk density, is lower than for S-type asteroids. This result is in agreement with the general picture of rubble-pile asteroids (i.e., lower bulk density, lower spin-rate limit). Moreover, the spin-rate distributions of asteroids of 3< D < 15 km in size show a steady decrease along frequency for f > 5 rev/day, regardless of the location in the main belt. The YORP effect is indicated to be less efficient in altering asteroid spin rates from our results when compared with the flat distribution found by Pravec et al. (Icarus 197:497-504, 2008. doi: 10.1016/j.icarus.2008.05.012). We also found a significant number drop at f = 5 rev/day in the spin-rate distributions of asteroids of D < 3 km.
The JCMT Nearby Galaxies Legacy Survey - VII. Hα imaging and massive star formation properties
NASA Astrophysics Data System (ADS)
Sánchez-Gallego, J. R.; Knapen, J. H.; Wilson, C. D.; Barmby, P.; Azimlu, M.; Courteau, S.
2012-06-01
We present Hα fluxes, star formation rates (SFRs) and equivalent widths (EWs) for a sample of 156 nearby galaxies observed in the 12CO J= 3-2 line as part of the James Clerk Maxwell Telescope Nearby Galaxies Legacy Survey. These are derived from images and values in the literature and from new Hα images for 72 galaxies which we publish here. We describe the sample, observations and procedures to extract the Hα fluxes and related quantities. We discuss the SFR properties of our sample and confirm the well-known correlation with galaxy luminosity, albeit with high dispersion. Our SFRs range from 0.1 to 11 M⊙ yr-1 with a median SFR value for the complete sample of 0.2 M⊙ yr-1. This median value is somewhat lower than similar published measurements, which we attribute, in part, to our sample being H I selected and, thus, not biased towards high SFRs as has frequently been the case in previous studies. Additionally, we calculate internal absorptions for the Hα line, A(Hα), which are lower than many of those used in previous studies. Our derived EWs, which range from 1 to 880 Å with a median value of 27 Å, show little dependence on luminosity but rise by a factor of 5 from early- to late-type galaxies. This paper is the first in a series aimed at comparing SFRs obtained from Hα imaging of galaxies with information derived from other tracers of star formation and atomic and molecular gas.
Tokas, Theodoros; Habicher, Martin; Junker, Daniel; Herrmann, Thomas; Jessen, Jan Peter; Knoll, Thomas; Nagele, Udo
2017-06-01
To evaluate the stone-free rates (SFRs) and stone clearance rates (SCRs) of extracorporeal shock-wave lithotripsy (SWL), retrograde intrarenal surgery (RIRS), and percutaneous nephrolitholapaxy (PCNL) according to non-contrast computer tomography (NCCT) findings. Original articles were identified from PubMed. After exclusion of ineligible papers, twenty-three studies with 2494 cases were included in the review. Six SWL, five RIRS and eight PCNL studies were selected. Additionally, four comparative articles were identified. SWL presents SFRs ranging 35-61.3 % and SCRs for residuals <4 mm being 43.2-92.9 %. RIRS studies report SFRs of 34.8-59.7 % and SCRs for residuals <4 mm ranging 48-96.7 %. Finally, PCNL presents SFRs of 20.8-100 % and SCRs for residuals <4 mm being 41.5-91.4 %. According to the comparative studies, SFRs are 17-61.3 % for SWL, 50 % for RIRS, and 95-100 % for PCNL. According to NCCT findings, it seems that PCNL provides better SFRs than ESWL and RIRS. However, further research with comparable and complete preoperative parameters and outcomes could reduce the heterogeneity of current data.
The Effect of Star Formation History on the Inferred Stellar Initial Mass Function
NASA Astrophysics Data System (ADS)
Elmegreen, Bruce G.; Scalo, John
2006-01-01
Peaks and lulls in the star formation rate (SFR) over the history of the Galaxy produce plateaus and declines in the present-day mass function (PDMF) where the main-sequence lifetime overlaps the age and duration of the SFR variation. These PDMF features can be misinterpreted as the form of the intrinsic stellar initial mass function (IMF) if the star formation rate is assumed to be constant or slowly varying with time. This effect applies to all regions that have formed stars for longer than the age of the most massive stars, including OB associations, star complexes, and especially galactic field stars. Related problems may apply to embedded clusters. Evidence is summarized for temporal SFR variations from parsec scales to entire galaxies, all of which should contribute to inferred IMF distortions. We give examples of various star formation histories to demonstrate the types of false IMF structures that might be seen. These include short-duration bursts, stochastic histories with lognormal amplitude distributions, and oscillating histories with various periods and phases. The inferred IMF should appear steeper than the intrinsic IMF over mass ranges where the stellar lifetimes correspond to times of decreasing SFRs; shallow portions of the inferred IMF correspond to times of increasing SFRs. If field regions are populated by dispersed clusters and defined by their low current SFRs, then they should have steeper inferred IMFs than the clusters. The SFRs required to give the steep field IMFs in the LMC and SMC are determined. Structure observed in several determinations of the Milky Way field star IMF can be accounted for by a stochastic and bursty star formation history.
VizieR Online Data Catalog: Type 2 AGN host galaxies in Chandra-COSMOS (Suh+, 2017)
NASA Astrophysics Data System (ADS)
Suh, H.; Civano, F.; Hasinger, G.; Lusso, E.; Lanzuisi, G.; Marchesi, S.; Trakhtenbrot, B.; Allevato, V.; Cappelluti, N.; Capak, P. L.; Elvis, M.; Griffiths, R. E.; Laigle, C.; Lira, P.; Riguccini, L.; Rosario, D. J.; Salvato, M.; Schawinski, K.; Vignali, C.
2018-01-01
We investigate the star formation properties of a large sample of ~2300 X-ray-selected Type 2 Active Galactic Nuclei (AGNs) host galaxies out to z~3 in the Chandra COSMOS Legacy Survey in order to understand the connection between the star formation and nuclear activity. Making use of the existing multi-wavelength photometric data available in the COSMOS field, we perform a multi-component modeling from far-infrared to near-ultraviolet using a nuclear dust torus model, a stellar population model and a starburst model of the spectral energy distributions (SEDs). Through detailed analyses of SEDs, we derive the stellar masses and the star formation rates (SFRs) of Type 2 AGN host galaxies. The stellar mass of our sample is in the range of 9
Are We Correctly Measuring Star-Formation Rates?
NASA Astrophysics Data System (ADS)
McQuinn, Kristen B.; Skillman, Evan D.; Dolphin, Andrew E.; Mitchell, Noah P.
2017-01-01
Integrating our knowledge of star formation (SF) traced by observations at different wavelengths is essential for correctly interpreting and comparing SF activity in a variety of systems and environments. This study compares extinction-corrected, integrated ultraviolet (UV) emission from resolved galaxies with color-magnitude diagram (CMD) based star-formation rates (SFRs) derived from resolved stellar populations and CMD fitting techniques in 19 nearby starburst and post-starburst dwarf galaxies. The data sets are from the panchromatic Starburst Irregular Dwarf Survey (STARBIRDS) and include deep legacy GALEX UV imaging, Hubble Space Telescope optical imaging, and Spitzer MIPS imaging. For the majority of the sample, the integrated near-UV fluxes predicted from the CMD-based SFRs—using four different models—agree with the measured, extinction corrected, integrated near-UV fluxes from GALEX images, but the far-UV (FUV) predicted fluxes do not. Furthermore, we find a systematic deviation between the SFRs based on integrated FUV luminosities and existing scaling relations, and the SFRs based on the resolved stellar populations. This offset is not driven by different SF timescales, variations in SFRs, UV attenuation, nor stochastic effects. This first comparison between CMD-based SFRs and an integrated FUV emission SFR indicator suggests that the most likely cause of the discrepancy is the theoretical FUV-SFR calibration from stellar evolutionary libraries and/or stellar atmospheric models. We present an empirical calibration of the FUV-based SFR relation for dwarf galaxies, with uncertainties, which is ˜53% larger than previous relations. These results have signficant implications for measuring FUV-based SFRs of high-redshift galaxies.
13CO Survey of Northern Intermediate-Mass Star-Forming Regions
NASA Astrophysics Data System (ADS)
Lundquist, Michael J.; Kobulnicky, H. A.; Kerton, C. R.
2014-01-01
We conducted a survey of 13CO with the OSO 20-m telescope toward 68 intermediate-mass star-forming regions (IM SFRs) visible in the northern hemisphere. These regions have mostly been excluded from previous CO surveys and were selected from IRAS colors that specify cool dust and large PAH contribution. These regions are known to host stars up to, but not exceeding, about 8 solar masses. We detect 13CO in 57 of the 68 IM SFRs down to a typical RMS of ~50 mK. We present kinematic distances, minimum column densities, and minimum masses for these IM SFRs.
NASA Astrophysics Data System (ADS)
Lei, Feng-Jie; Wu, Hong; Du, Wei; Zhu, Yi-Nan; Lam, Man-I.; Zhou, Zhi-Min; He, Min; Jin, Jun-Jie; Cao, Tian-Wen; Zhao, Pin-Song; Yang, Fan; Wu, Chao-Jian; Li, Hong-Bin; Ren, Juan-Juan
2018-03-01
We present the observed Hα flux and derived star formation rates (SFRs) for a fall sample of low-surface-brightness galaxies (LSBGs). The sample is selected from the fall sky region of the 40% ALFALFA H I Survey–SDSS DR7 photometric data, and all the Hα images were obtained using the 2.16 m telescope, operated by the National Astronomy Observatories, Chinese Academy of Sciences. A total of 111 LSBGs were observed and Hα flux was measured in 92 of them. Though almost all the LSBGs in our sample are H I-rich, their SFRs, derived from the extinction and filter-transmission-corrected Hα flux, are less than 1 M ⊙ yr‑1. LSBGs and star-forming galaxies have similar H I surface densities, but LSBGs have much lower SFRs and SFR surface densities than star-forming galaxies. Our results show that LSBGs deviate from the Kennicutt–Schmidt law significantly, which indicates that they have low star formation efficiency. The SFRs of LSBGs are close to average SFRs in Hubble time and support previous arguments that most of the LSBGs are stable systems and they tend to seldom contain strong interactions or major mergers in their star formation histories.
NASA Astrophysics Data System (ADS)
Stanley, F.; Alexander, D. M.; Harrison, C. M.; Rosario, D. J.; Wang, L.; Aird, J. A.; Bourne, N.; Dunne, L.; Dye, S.; Eales, S.; Knudsen, K. K.; Michałowski, M. J.; Valiante, E.; De Zotti, G.; Furlanetto, C.; Ivison, R.; Maddox, S.; Smith, M. W. L.
2017-12-01
We investigate the mean star formation rates (SFRs) in the host galaxies of ∼3000 optically selected quasi-stellar objects (QSOs) from the Sloan Digital Sky Survey within the Herschel-ATLAS fields, and a radio-luminous subsample covering the redshift range of z = 0.2-2.5. Using Wide-field Infrared Survey Explorer (WISE) and Herschel photometry (12-500 μm) we construct composite spectral energy distributions (SEDs) in bins of redshift and active galactic nucleus (AGN) luminosity. We perform SED fitting to measure the mean infrared luminosity due to star formation, removing the contamination from AGN emission. We find that the mean SFRs show a weak positive trend with increasing AGN luminosity. However, we demonstrate that the observed trend could be due to an increase in black hole (BH) mass (and a consequent increase of inferred stellar mass) with increasing AGN luminosity. We compare to a sample of X-ray selected AGN and find that the two populations have consistent mean SFRs when matched in AGN luminosity and redshift. On the basis of the available virial BH masses, and the evolving BH mass to stellar mass relationship, we find that the mean SFRs of our QSO sample are consistent with those of main sequence star-forming galaxies. Similarly the radio-luminous QSOs have mean SFRs that are consistent with both the overall QSO sample and with star-forming galaxies on the main sequence. In conclusion, on average QSOs reside on the main sequence of star-forming galaxies, and the observed positive trend between the mean SFRs and AGN luminosity can be attributed to BH mass and redshift dependencies.
Observations of starburst galaxies: Science and supporting technology
NASA Astrophysics Data System (ADS)
Laag, Edward Aric
In chapter 1 we report on the development of wavefront reconstruction and control algorithms for multi-conjugate adaptive optics (MCAO) and the results of testing them in the laboratory under conditions that simulate an 8 meter class telescope. The UCO/Lick Observatory Laboratory for Adaptive Optics Multi-Conjugate testbed allows us to test wide field of view adaptive optics systems as they might be instantiated in the near future on giant telescopes. In particular, we have been investigating the performance of MCAO using five laser beacons for wavefront sensing and a minimum variance algorithm for control of two conjugate deformable mirrors. We have demonstrated improved Strehl ratio and enlarged field of view performance when compared to conventional AO techniques. We have demonstrated improved MCAO performance with the implementation of a routine that minimizes the generalized isoplanatism when turbulent layers do not correspond to deformable mirror conjugate altitudes. Finally, we have demonstrated suitability of the system for closed-loop operation when configured to feed back conditional mean estimates of wavefront residuals rather than the directly measured residuals. This technique has recently been referred to as the "pseudo-open-loop" control law in the literature. Chapter 2 introduces the Multi-wavelength Extreme Starburst Sample (MESS), a new catalog of 138 star-forming galaxies (0.1 < z < 0.3) optically selected from the SDSS using emission line strength diagnostics to have SFR ≥ 50 M⊙ yr-1 based on a Kroupa IMF. The MESS was designed to complement samples of nearby star forming galaxies such as the luminous infrared galaxies (LIRGs), and ultraviolet luminous galaxies (UVLGs). Observations using the multiband imaging photometer (MIPS; 24, 70, and 160mum channels) on the Spitzer Space Telescope indicate the MESS galaxies have IR luminosities similar to those of LIRGs, with an estimated median LTIR ˜ 3 x 1011 L⊙ . The selection criteria for the MESS suggests they may be less obscured than typical far-IR selected galaxies with similar estimated SFRs. We estimate the SFRs based directly on luminosities to determine the agreement for these methods in the MESS.
A catalogue of faint local radio AGN and the properties of their host galaxies
NASA Astrophysics Data System (ADS)
Lofthouse, E. K.; Kaviraj, S.; Smith, D. JB; Hardcastle, M. J.
2018-05-01
We present a catalogue of local (z < 0.1) galaxies that contain faint AGN. We select these objects by identifying galaxies that exhibit a significant excess in their radio luminosities, compared to what is expected from the observed levels of star-formation activity in these systems. This is achieved by comparing the optical (spectroscopic) star formation rate (SFR) to the 1.4 GHz luminosity measured from the FIRST survey. The majority of the AGN identified in this study are fainter than those in previous work, such as in the Best and Heckman (2012) catalogue. We show that these faint AGN make a non-negligible contribution to the radio luminosity function at low luminosities (below 1022.5 W Hz-1), and host ˜13 per cent of the local radio luminosity budget. Their host galaxies are predominantly high stellar-mass systems (with a median stellar mass of 1011M⊙), are found across a range of environments (but typically in denser environments than star-forming galaxies) and have early-type morphologies. This study demonstrates a general technique to identify AGN in galaxy populations where reliable optical SFRs can be extracted using spectro-photometry and where radio data are also available so that a radio excess can be measured. Our results also demonstrate that it is unsafe to infer SFRs from radio emission alone, even if bright AGN have been excluded from a sample, since there is a significant population of faint radio AGN which may contaminate the radio-derived SFRs.
The galaxy-wide initial mass function of dwarf late-type to massive early-type galaxies
NASA Astrophysics Data System (ADS)
Weidner, C.; Kroupa, P.; Pflamm-Altenburg, J.; Vazdekis, A.
2013-12-01
Observational studies are showing that the galaxy-wide stellar initial mass function (IMF) is top-heavy in galaxies with high star formation rates (SFRs). Calculating the integrated galactic stellar initial mass function (IGIMF) as a function of the SFR of a galaxy, it follows that galaxies which have or which formed with SFRs >10 M⊙ yr-1 would have a top-heavy IGIMF in excellent consistency with the observations. Consequently and in agreement with observations, elliptical galaxies would have higher mass-to-light ratios as a result of the overabundance of stellar remnants compared to a stellar population that formed with an invariant canonical stellar IMF. For the Milky Way, the IGIMF yields very good agreement with the disc- and the bulge IMF determinations. Our conclusions are that purely stochastic descriptions of star formation on the scales of a parsec and above are falsified. Instead, star formation follows the laws, stated here as axioms, which define the IGIMF theory. We also find evidence that the power-law index β of the embedded cluster mass function decreases with increasing SFR. We propose further tests of the IGIMF theory through counting massive stars in dwarf galaxies.
VizieR Online Data Catalog: X-ray observations of HCG galaxies (Tzanavaris+, 2016)
NASA Astrophysics Data System (ADS)
Tzanavaris, P.; Hornschemeier, A. E.; Gallagher, S. C.; Lenkic, L.; Desjardins, T. D.; Walker, L. M.; Johnson, K. E.; Mulchaey, J. S.
2016-04-01
In this paper we study a sample of 15 compact groups (CGs) observed with Chandra/ACIS, Swift/UVOT and Spitzer/IRAC-MIPS for which archival data exist, allowing us to obtain SFRs, stellar masses, sSFRs and X-ray fluxes and luminosities. Table 1 shows the group sample, including redshifts, luminosity distances and group evolutionary types. Allowing for the fact that some galaxies do not fall in the field of view of all three instruments, the total number of CG galaxies analyzed is 47. Details on the Swift and Spitzer observations and data for systems in this sample can be found in Tzanavaris et al. (2010ApJ...716..556T) and (L. Lenkic et al. 2015, in preparation). For Chandra/ACIS observations we refer the reader to Tzanavaris et al. (2014, J/ApJS/212/9) and Desjardins et al. (2013ApJ...763..121D; 2014ApJ...790..132D). (2 data files).
Structured Forms Reference Set of Binary Images (SFRS)
National Institute of Standards and Technology Data Gateway
NIST Structured Forms Reference Set of Binary Images (SFRS) (Web, free access) The NIST Structured Forms Database (Special Database 2) consists of 5,590 pages of binary, black-and-white images of synthesized documents. The documents in this database are 12 different tax forms from the IRS 1040 Package X for the year 1988.
Mapping Extinction and Star Formation Rates of Nearby Galaxies
NASA Astrophysics Data System (ADS)
Ridenour, Anthony; Takamiya, M.
2010-01-01
Star Formation Rate (SFR) is a physical characteristic of galaxies vital to our understanding of such problems as the evolution of the Universe. In computing SFRs obscuring dust systematically lowers them at shorter wavelengths compared to longer wavelengths. This issue of dust extinction has been handled well by multi-wavelength studies of nearby galaxies. Star Formation Rate measurements of distant galaxies are currently reliant on the emission of visible spectroscopic lines like Hα and [OII] after correction for extinction. However, if the visible light is completely obscured an incorrect assumption may be drawn; namely that there is neither SFR nor extinction. The work purposed here is to calibrate the SFR ascertained from Hα emission in nearby galaxies and compare it to radio and infrared emission. The Balmer decrement, or the ratio of Hβ to Hα emission, used to determine extinction, will also be studied and compared to infrared images. 30 nearby galaxies will be sampled and 2-D maps and Balmer decrements will be formed to do two things: measure SFRs and determine differences between Hα and infrared emission, and explore in what ways this difference corresponds with such things as the radio SFR, galaxy luminosity and morphological type. The accuracy of Hα as a SFR indicator and its determination as a sound tool in measuring SFRs of distant galaxies can both be quantified by interpreting these maps. Dr. Marianne Takamiya, the principal investigator and my mentor, secured funds through a grant to the University of Hawai'i at Hilo from The Research Corporation for Science Advancement Cottrell College Science Awards for this research.
RELAP5 Analysis of the Hybrid Loop-Pool Design for Sodium Cooled Fast Reactors
DOE Office of Scientific and Technical Information (OSTI.GOV)
Hongbin Zhang; Haihua Zhao; Cliff Davis
2008-06-01
An innovative hybrid loop-pool design for sodium cooled fast reactors (SFR-Hybrid) has been recently proposed. This design takes advantage of the inherent safety of a pool design and the compactness of a loop design to improve economics and safety of SFRs. In the hybrid loop-pool design, primary loops are formed by connecting the reactor outlet plenum (hot pool), intermediate heat exchangers (IHX), primary pumps and the reactor inlet plenum with pipes. The primary loops are immersed in the cold pool (buffer pool). Passive safety systems -- modular Pool Reactor Auxiliary Cooling Systems (PRACS) – are added to transfer decay heatmore » from the primary system to the buffer pool during loss of forced circulation (LOFC) transients. The primary systems and the buffer pool are thermally coupled by the PRACS, which is composed of PRACS heat exchangers (PHX), fluidic diodes and connecting pipes. Fluidic diodes are simple, passive devices that provide large flow resistance in one direction and small flow resistance in reverse direction. Direct reactor auxiliary cooling system (DRACS) heat exchangers (DHX) are immersed in the cold pool to transfer decay heat to the environment by natural circulation. To prove the design concepts, especially how the passive safety systems behave during transients such as LOFC with scram, a RELAP5-3D model for the hybrid loop-pool design was developed. The simulations were done for both steady-state and transient conditions. This paper presents the details of RELAP5-3D analysis as well as the calculated thermal response during LOFC with scram. The 250 MW thermal power conventional pool type design of GNEP’s Advanced Burner Test Reactor (ABTR) developed by Argonne National Laboratory was used as the reference reactor core and primary loop design. The reactor inlet temperature is 355 °C and the outlet temperature is 510 °C. The core design is the same as that for ABTR. The steady state buffer pool temperature is the same as the reactor inlet temperature. The peak cladding, hot pool, cold pool and reactor inlet temperatures were calculated during LOFC. The results indicate that there are two phases during LOFC transient – the initial thermal equilibration phase and the long term decay heat removal phase. The initial thermal equilibration phase occurs over a few hundred seconds, as the system adjusts from forced circulation to natural circulation flow. Subsequently, during long-term heat removal phase all temperatures evolve very slowly due to the large thermal inertia of the primary and buffer pool systems. The results clearly show that passive safety PRACS can effectively transfer decay heat from the primary system to the buffer pool by natural circulation. The DRACS system in turn can effectively transfer the decay heat to the environment.« less
Structured Forms Reference Set of Binary Images II (SFRS2)
National Institute of Standards and Technology Data Gateway
NIST Structured Forms Reference Set of Binary Images II (SFRS2) (Web, free access) The second NIST database of structured forms (Special Database 6) consists of 5,595 pages of binary, black-and-white images of synthesized documents containing hand-print. The documents in this database are 12 different tax forms with the IRS 1040 Package X for the year 1988.
The expression analysis of Sfrs10 and Celf4 during mouse retinal development
Karunakaran, Devi Krishna Priya; Congdon, Sean; Guerrette, Thomas; Banday, Abdul Rouf; Lemoine, Christopher; Chhaya, Nisarg; Kanadia, Rahul
2013-01-01
Processing of mRNAs including, alternative splicing (AS), mRNA transport and translation regulation are crucial to eukaryotic gene expression. For example, >90% of the gene in the human genome are known to undergo alternative splicing thereby expanding the proteome production capacity of a limited number of genes. Similarly, mRNA export and translation regulation plays a vital role in regulating protein production. Thus, it is important to understand how these RNA binding proteins including alternative splicing factors (ASFs) and mRNA transport and translation factors regulate these processes. Here we report the expression of an ASF, Serine-arginine rich splicing factor 10 (Sfrs10) and a mRNA translation regulation factor, CUGBP, elav like family member 4 (Celf4) in the developing mouse retina. Sfrs10 was expressed throughout postnatal (P) retinal development and was observed progressively in newly differentiating neurons. Immunofluorescence (IF) showed Sfrs10 in retinal ganglion cells (RGCs) at P0, followed by amacrine and bipolar cells, and at P8 it was enriched in red/green cone photoreceptor cells. By P22, Sfrs10 was observed in rod photoreceptors in a peri-nuclear pattern. Like Sfrs10, Celf4 was also observed in the developing retina, but with two distinct retinal isoforms. In situ hybridization (ISH) showed progressive expression of Celf4 in differentiating neurons, which was confirmed by IF that showed a dynamic shift in Celf4 localization. Early in development Celf4 expression was restricted to the nuclei of newly differentiating RGCs and later (E16 onwards) it was observed in the initial segments of RGC axons. Later, during postnatal development, Celf4 was observed in amacrine and bipolar cells, but here it was predominantly cytoplasmic and enriched in the two synaptic layers. Specifically, at P14, Celf4 was observed in the synaptic boutons of rod bipolar cells marked by Pkc-α. Thus, Celf4 might be regulating AS early in development besides its known role of regulating mRNA localization/translation. In all, our data suggests an important role for AS and mRNA localization/translation in retinal neuron differentiation. PMID:23932931
DOE Office of Scientific and Technical Information (OSTI.GOV)
Ma, Jingzhe; Gonzalez, Anthony H.; Spilker, J. S.
To understand cosmic mass assembly in the universe at early epochs, we primarily rely on measurements of the stellar masses and star formation rates (SFRs) of distant galaxies. In this paper, we present stellar masses and SFRs of six high-redshift (2.8 ≤ z ≤ 5.7) dusty, star-forming galaxies (DSFGs) that are strongly gravitationally lensed by foreground galaxies. These sources were first discovered by the South Pole Telescope (SPT) at millimeter wavelengths and all have spectroscopic redshifts and robust lens models derived from Atacama Large Millimeter/submillimeter Array observations. We have conducted follow-up observations to obtain multi-wavelength imaging data using the Hubblemore » Space Telescope (HST), Spitzer, Herschel, and the Atacama Pathfinder EXperiment. We use the high-resolution HST/Wide Field Camera 3 images to disentangle the background source from the foreground lens in Spitzer/IRAC data. The detections and upper limits provide important constraints on the spectral energy distributions (SEDs) for these DSFGs, yielding stellar masses, IR luminosities, and SFRs. The SED fits of six SPT sources show that the intrinsic stellar masses span a range more than one order of magnitude with a median value ∼5 ×10{sup 10} M{sub ⊙}. The intrinsic IR luminosities range from 4 × 10{sup 12} L{sub ⊙} to 4 × 10{sup 13} L{sub ⊙}. They all have prodigious intrinsic SFRs of 510–4800 M{sub ⊙} yr{sup −1}. Compared to the star-forming main sequence (MS), these six DSFGs have specific SFRs that all lie above the MS, including two galaxies that are a factor of 10 higher than the MS. Our results suggest that we are witnessing ongoing strong starburst events that may be driven by major mergers.« less
Stellar Masses and Star Formation Rates of Lensed, Dusty, Star-forming Galaxies from the SPT Survey
NASA Astrophysics Data System (ADS)
Ma, Jingzhe; Gonzalez, Anthony. H.; Spilker, J. S.; Strandet, M.; Ashby, M. L. N.; Aravena, M.; Béthermin, M.; Bothwell, M. S.; de Breuck, C.; Brodwin, M.; Chapman, S. C.; Fassnacht, C. D.; Greve, T. R.; Gullberg, B.; Hezaveh, Y.; Malkan, M.; Marrone, D. P.; Saliwanchik, B. R.; Vieira, J. D.; Weiss, A.; Welikala, N.
2015-10-01
To understand cosmic mass assembly in the universe at early epochs, we primarily rely on measurements of the stellar masses and star formation rates (SFRs) of distant galaxies. In this paper, we present stellar masses and SFRs of six high-redshift (2.8 ≤ z ≤ 5.7) dusty, star-forming galaxies (DSFGs) that are strongly gravitationally lensed by foreground galaxies. These sources were first discovered by the South Pole Telescope (SPT) at millimeter wavelengths and all have spectroscopic redshifts and robust lens models derived from Atacama Large Millimeter/submillimeter Array observations. We have conducted follow-up observations to obtain multi-wavelength imaging data using the Hubble Space Telescope (HST), Spitzer, Herschel, and the Atacama Pathfinder EXperiment. We use the high-resolution HST/Wide Field Camera 3 images to disentangle the background source from the foreground lens in Spitzer/IRAC data. The detections and upper limits provide important constraints on the spectral energy distributions (SEDs) for these DSFGs, yielding stellar masses, IR luminosities, and SFRs. The SED fits of six SPT sources show that the intrinsic stellar masses span a range more than one order of magnitude with a median value ˜5 ×1010 M⊙. The intrinsic IR luminosities range from 4 × 1012 L⊙ to 4 × 1013 L⊙. They all have prodigious intrinsic SFRs of 510-4800 M⊙ yr-1. Compared to the star-forming main sequence (MS), these six DSFGs have specific SFRs that all lie above the MS, including two galaxies that are a factor of 10 higher than the MS. Our results suggest that we are witnessing ongoing strong starburst events that may be driven by major mergers.
DOE Office of Scientific and Technical Information (OSTI.GOV)
McQuinn, Kristen B. W.; Skillman, Evan D.; Simones, Jacob E.
The Survey of Hi in Extremely Low-mass Dwarfs is an on-going multi-wavelength program to characterize the gas, star formation, and evolution in gas-rich, very low-mass galaxies that populate the faint end of the galaxy luminosity function. The galaxies were selected from the first ∼10% of the Hi Arecibo Legacy Fast ALFA survey based on their low Hi mass and low baryonic mass. Here, we measure the star formation properties from optically resolved stellar populations for 12 galaxies using a color–magnitude diagram fitting technique. We derive lifetime average star formation rates (SFRs), recent SFRs, stellar masses, and gas fractions. Overall, themore » recent SFRs are comparable to the lifetime SFRs with mean birthrate parameter of 1.4, with a surprisingly narrow standard deviation of 0.7. Two galaxies are classified as dwarf transition galaxies (dTrans). These dTrans systems have star formation and gas properties consistent with the rest of the sample, in agreement with previous results that some dTrans galaxies may simply be low-luminosity dwarf irregulars. We do not find a correlation between the recent star formation activity and the distance to the nearest neighboring galaxy, suggesting that the star formation process is not driven by gravitational interactions, but regulated internally. Further, we find a broadening in the star formation and gas properties (i.e., specific SFRs, stellar masses, and gas fractions) compared to the generally tight correlation found in more massive galaxies. Overall, the star formation and gas properties indicate these very low-mass galaxies host a fluctuating, non-deterministic, and inefficient star formation process.« less
Characterizing Protoplanetary Disks in a Young Binary in Orion
NASA Astrophysics Data System (ADS)
Powell, Jonas; Hughes, A. Meredith; Mann, Rita; Flaherty, Kevin; Di Francesco, James; Williams, Jonathan
2018-01-01
Planetary systems form in circumstellar disks of gas and dust surrounding young stars. One open question in the study of planet formation involves understanding how different environments affect the properties of the disks and planets they generate. Understanding the properties of disks in high-mass star forming regions (SFRs) is critical since most stars - probably including our Sun - form in those regions. By comparing the disks in high-mass SFRs to those in better-studied low-mass SFRs we can learn about the role environment plays in planet formation. Here we present 0.5" resolution observations of the young two-disk binary system V2434 Ori in the Orion Nebula from the Atacama Large Millimeter/submillimeter Array (ALMA) in molecular line tracers of CO(3-2), HCN(4-3), HCO+(4-3) and CS(7-6). We model each disk’s mass, radius, temperature structure, and molecular abundances, by creating synthetic images using an LTE ray-tracing code and comparing simulated observations with the ALMA data in the visibility domain. We then compare our results to a previous study of molecular line emission from a single Orion proplyd, modeled using similar methods, and to previously characterized disks in low-mass SFRs to investigate the role of environment in disk chemistry and planetary system formation.
Demonstrating Diversity in Star-formation Histories with the CSI Survey
NASA Astrophysics Data System (ADS)
Dressler, Alan; Kelson, Daniel D.; Abramson, Louis E.; Gladders, Michael D.; Oemler, Augustus, Jr.; Poggianti, Bianca M.; Mulchaey, John S.; Vulcani, Benedetta; Shectman, Stephen A.; Williams, Rik J.; McCarthy, Patrick J.
2016-12-01
We present coarse but robust star-formation histories (SFHs) derived from spectrophotometric data of the Carnegie-Spitzer-IMACS Survey, for 22,494 galaxies at 0.3\\lt z\\lt 0.9 with stellar masses of 109 M ⊙ to 1012 M ⊙. Our study moves beyond “average” SFHs and distribution functions of specific star-formation rates (sSFRs) to individually measured SFHs for tens of thousands of galaxies. By comparing star-formation rates (SFRs) with timescales of {10}10,{10}9, and 108 years, we find a wide diversity of SFHs: “old galaxies” that formed most or all of their stars early, galaxies that formed stars with declining or constant SFRs over a Hubble time, and genuinely “young galaxies” that formed most of their stars since z = 1. This sequence is one of decreasing stellar mass, but remarkably, each type is found over a mass range of a factor of 10. Conversely, galaxies at any given mass follow a wide range of SFHs, leading us to conclude that (1) halo mass does not uniquely determine SFHs, (2) there is no “typical” evolutionary track, and (3) “abundance matching” has limitations as a tool for inferring physics. Our observations imply that SFHs are set at an early epoch, and that—for most galaxies—the decline and cessation of star formation occurs over a Hubble time, without distinct “quenching” events. SFH diversity is inconsistent with models where galaxy mass, at any given epoch, grows simply along relations between SFR and stellar mass, but is consistent with a two-parameter lognormal form, lending credence to this model from a new and independent perspective. This paper includes data gathered with the 6.5 m Magellan Telescopes located at Las Campanas Observatory, Chile.
The Relation between Luminous AGNs and Star Formation in Their Host Galaxies
NASA Astrophysics Data System (ADS)
Xu, Lei; Rieke, G. H.; Egami, E.; Haines, C. P.; Pereira, M. J.; Smith, G. P.
2015-08-01
We study the relation of active galactic nuclei (AGNs) to star formation in their host galaxies. Our sample includes 205 Type-1 and 85 Type-2 AGNs, 162 detected with Herschel, from fields surrounding 30 galaxy clusters in the Local Cluster Substructure Survey. The sample is identified by optical line widths and ratios after selection to be brighter than 1 mJy at 24 μm. We show that Type-2 AGN [O iii]λ5007 line fluxes at high z can be contaminated by their host galaxies with typical spectrograph entrance apertures (but our sample is not compromised in this way). We use spectral energy distribution (SED) templates to decompose the galaxy SEDs and estimate star formation rates (SFRs), AGN luminosities, and host galaxy stellar masses (described in an accompanying paper). The AGNs arise from massive black holes (˜ 3× {10}8{M}⊙ ) accreting at ˜10% of the Eddington rate and residing in galaxies with stellar mass \\gt 3× {10}10{M}⊙ ; those detected with Herschel have IR luminosity from star formation in the range of {L}{SF,{IR}}˜ {10}10-{10}12{L}⊙ . We find that (1) the specific SFRs in the host galaxies are generally consistent with those of normal star-forming (main sequence) galaxies; (2) there is a strong correlation between the luminosities from star formation and the AGN; and (3) the correlation may not result from a causal connection, but could arise because the black hole mass (and hence AGN Eddington luminosity) and star formation are both correlated with the galaxy mass.
DOE Office of Scientific and Technical Information (OSTI.GOV)
Getman, Konstantin V.; Broos, Patrick S.; Feigelson, Eric D.
The Star Formation in Nearby Clouds (SFiNCs) project is aimed at providing a detailed study of the young stellar populations and of star cluster formation in the nearby 22 star-forming regions (SFRs) for comparison with our earlier MYStIX survey of richer, more distant clusters. As a foundation for the SFiNCs science studies, here, homogeneous data analyses of the Chandra X-ray and Spitzer mid-infrared archival SFiNCs data are described, and the resulting catalogs of over 15,300 X-ray and over 1,630,000 mid-infrared point sources are presented. On the basis of their X-ray/infrared properties and spatial distributions, nearly 8500 point sources have been identifiedmore » as probable young stellar members of the SFiNCs regions. Compared to the existing X-ray/mid-infrared publications, the SFiNCs member list increases the census of YSO members by 6%–200% for individual SFRs and by 40% for the merged sample of all 22 SFiNCs SFRs.« less
NASA Astrophysics Data System (ADS)
Payne, Anna; Inami, Hanae
2015-01-01
We report on measurements for dust extinction and star formation rates (SFRs) for luminous infrared galaxies (LIRGs). We utilized the hydrogen recombination lines Brα, Hα, and Hβ observed in the infrared and optical wavelengths with AKARI and the Lick Observatory's Kast Double spectrograph to produce spectra. By calculating Brα/Hα ratios for the target galaxies, extinction is estimated. A possible correlation between higher LIR, IR/UV, specific SFRs and higher Brα/Hα has been found. Through comparisons with Hα/Hβ, it may be possible to determine if Hα is, in fact, underestimating extinction, since Hα is more strongly affected by extinction compared to longer wavelengths such as Brα. The accuracy of using Hα in extinction corrections is important for SFR studies, and, thus, one goal is to find a more accurate reddening correction factor. Payne was supported by the NOAO/KPNO Research Experiences for Undergraduates (REU) Program which is funded by the National Science Foundation Research Experiences for Undergraduates Program (AST-1262829).
A relationship between salivary flow rates and Candida counts in patients with xerostomia.
Nadig, Suchetha Devendrappa; Ashwathappa, Deepak Timmasandra; Manjunath, Muniraju; Krishna, Sowmya; Annaji, Araleri Gopalkrishna; Shivaprakash, Praveen Kunigal
2017-01-01
Most of the adult population is colonized by Candida in their oral cavity. The process of colonization depends on several factors, including the interaction between Candida and salivary proteins. Therefore, salivary gland hypofunction may alter the oral microbiota and increase the risk for opportunistic infections, such as candidiasis. Hence, it is necessary to evaluate the relationship between salivary flow rates (SFRs) and Candida colony counts in the saliva of patients with xerostomia. This study aims to determine and evaluate the relationship between SFRs and Candida colony forming units (CFUs) in patients with xerostomia. This study was a descriptive study. The study participants were taken from the patients attending outpatient department in a private dental college. Fifty patients, who reported xerostomia in a questionnaire of the symptoms of xerostomia, were selected. Chewing stimulated whole saliva samples were collected from them and their SFRs were assessed. Saliva samples were inoculated in the Sabouraud dextrose agar culture media for 24-48 h, and Candida CFUs were counted. Chi-squared test was used to analyze the data. There was a significant inverse relationship between salivary flow and candida CFUs count when patients with high colony counts were analyzed (cutoff point of 400 or greater CFU/mL). Females had less SFR than males. Most of the patients who had hyposalivation were taking medication for the underlying systemic diseases. Candida albicans was the most frequent species. There was a significantly negative correlation between SFRs and Candida CFUs in the patients with xerostomia.
DOE Office of Scientific and Technical Information (OSTI.GOV)
Haines, C. P.; Pereira, M. J.; Egami, E.
2013-10-01
We present an analysis of the levels and evolution of star formation activity in a representative sample of 30 massive galaxy clusters at 0.15 < z < 0.30 from the Local Cluster Substructure Survey, combining wide-field Spitzer/MIPS 24 μm data with extensive spectroscopy of cluster members. The specific SFRs of massive (M > or approx. 10{sup 10} M{sub ☉}) star-forming cluster galaxies within r{sub 200} are found to be systematically ∼28% lower than their counterparts in the field at fixed stellar mass and redshift, a difference significant at the 8.7σ level. This is the unambiguous signature of star formation inmore » most (and possibly all) massive star-forming galaxies being slowly quenched upon accretion into massive clusters, their star formation rates (SFRs) declining exponentially on quenching timescales in the range 0.7-2.0 Gyr. We measure the mid-infrared Butcher-Oemler effect over the redshift range 0.0-0.4, finding rapid evolution in the fraction (f{sub SF}) of massive (M{sub K} < – 23.1) cluster galaxies within r{sub 200} with SFRs > 3 M{sub ☉} yr{sup –1}, of the form f{sub SF}∝(1 + z){sup 7.6±1.1}. We dissect the origins of the Butcher-Oemler effect, revealing it to be due to the combination of a ∼3 × decline in the mean specific SFRs of star-forming cluster galaxies since z ∼ 0.3 with a ∼1.5 × decrease in number density. Two-thirds of this reduction in the specific SFRs of star-forming cluster galaxies is due to the steady cosmic decline in the specific SFRs among those field galaxies accreted into the clusters. The remaining one-third reflects an accelerated decline in the star formation activity of galaxies within clusters. The slow quenching of star formation in cluster galaxies is consistent with a gradual shut down of star formation in infalling spiral galaxies as they interact with the intracluster medium via ram-pressure stripping or starvation mechanisms. The observed sharp decline in star formation activity among cluster galaxies since z ∼ 0.4 likely reflects the increased susceptibility of low-redshift spiral galaxies to gas removal mechanisms as their gas surface densities decrease with time. We find no evidence for the build-up of cluster S0 bulges via major nuclear starburst episodes.« less
A relationship between salivary flow rates and Candida counts in patients with xerostomia
Nadig, Suchetha Devendrappa; Ashwathappa, Deepak Timmasandra; Manjunath, Muniraju; Krishna, Sowmya; Annaji, Araleri Gopalkrishna; Shivaprakash, Praveen Kunigal
2017-01-01
Context: Most of the adult population is colonized by Candida in their oral cavity. The process of colonization depends on several factors, including the interaction between Candida and salivary proteins. Therefore, salivary gland hypofunction may alter the oral microbiota and increase the risk for opportunistic infections, such as candidiasis. Hence, it is necessary to evaluate the relationship between salivary flow rates (SFRs) and Candida colony counts in the saliva of patients with xerostomia. Aims: This study aims to determine and evaluate the relationship between SFRs and Candida colony forming units (CFUs) in patients with xerostomia. Settings and Design: This study was a descriptive study. Subjects and Methods: The study participants were taken from the patients attending outpatient department in a private dental college. Fifty patients, who reported xerostomia in a questionnaire of the symptoms of xerostomia, were selected. Chewing stimulated whole saliva samples were collected from them and their SFRs were assessed. Saliva samples were inoculated in the Sabouraud dextrose agar culture media for 24–48 h, and Candida CFUs were counted. Statistical Analysis Used: Chi-squared test was used to analyze the data. Results: There was a significant inverse relationship between salivary flow and candida CFUs count when patients with high colony counts were analyzed (cutoff point of 400 or greater CFU/mL). Females had less SFR than males. Most of the patients who had hyposalivation were taking medication for the underlying systemic diseases. Candida albicans was the most frequent species. Conclusions: There was a significantly negative correlation between SFRs and Candida CFUs in the patients with xerostomia. PMID:28932047
DOE Office of Scientific and Technical Information (OSTI.GOV)
Mor, Rivay; Netzer, Hagai; Trakhtenbrot, Benny
We report new Herschel observations of 25 z {approx_equal} 4.8 extremely luminous optically selected active galactic nuclei (AGNs). Five of the sources have extremely large star-forming (SF) luminosities, L{sub SF}, corresponding to SF rates (SFRs) of 2800-5600 M{sub Sun} yr{sup -1} assuming a Salpeter initial mass function. The remaining sources have only upper limits on their SFRs, but stacking their Herschel images results in a mean SFR of 700 {+-} 150 M{sub Sun} yr{sup -1}. The higher SFRs in our sample are comparable to the highest observed values so far at any redshift. Our sample does not contain obscured AGNs,more » which enables us to investigate several evolutionary scenarios connecting supermassive black holes and SF activity in the early universe. The most probable scenario is that we are witnessing the peak of SF activity in some sources and the beginning of the post-starburst decline in others. We suggest that all 25 sources, which are at their peak AGN activity, are in large mergers. AGN feedback may be responsible for diminishing the SF activity in 20 of them, but is not operating efficiently in 5 others.« less
Are star formation rates of galaxies bimodal?
NASA Astrophysics Data System (ADS)
Feldmann, Robert
2017-09-01
Star formation rate (SFR) distributions of galaxies are often assumed to be bimodal with modes corresponding to star-forming and quiescent galaxies, respectively. Both classes of galaxies are typically studied separately, and SFR distributions of star-forming galaxies are commonly modelled as lognormals. Using both observational data and results from numerical simulations, I argue that this division into star-forming and quiescent galaxies is unnecessary from a theoretical point of view and that the SFR distributions of the whole population can be well fitted by zero-inflated negative binomial distributions. This family of distributions has three parameters that determine the average SFR of the galaxies in the sample, the scatter relative to the star-forming sequence and the fraction of galaxies with zero SFRs, respectively. The proposed distributions naturally account for (I) the discrete nature of star formation, (II) the presence of 'dead' galaxies with zero SFRs and (III) asymmetric scatter. Excluding 'dead' galaxies, the distribution of log SFR is unimodal with a peak at the star-forming sequence and an extended tail towards low SFRs. However, uncertainties and biases in the SFR measurements can create the appearance of a bimodal distribution.
Chen, Shasha; Cai, Chenxu; Li, Zehua; Liu, Guangao; Wang, Yuande; Blonska, Marzenna; Li, Dan; Du, Juan; Lin, Xin; Yang, Meixiang; Dong, Zhongjun
2017-02-01
Signaling lymphocytic activation molecule (SLAM)-associated protein (SAP) mutations in X-linked lymphoproliferative disease (XLP) lead to defective NKT cell development and impaired humoral immunity. Because of the redundancy of SLAM family receptors (SFRs) and the complexity of SAP actions, how SFRs and SAP mediate these processes remains elusive. Here, we examined NKT cell development and humoral immunity in mice completely deficient in SFR. We found that SFR deficiency severely impaired NKT cell development. In contrast to SAP deficiency, SFR deficiency caused no apparent defect in follicular helper T (T FH ) cell differentiation. Intriguingly, the deletion of SFRs completely rescued the severe defect in T FH cell generation caused by SAP deficiency, whereas SFR deletion had a minimal effect on the defective NKT cell development in SAP-deficient mice. These findings suggest that SAP-dependent activating SFR signaling is essential for NKT cell selection; however, SFR signaling is inhibitory in SAP-deficient T FH cells. Thus, our current study revises our understanding of the mechanisms underlying T cell defects in patients with XLP. © 2017 Chen et al.
Cai, Chenxu; Liu, Guangao; Wang, Yuande; Du, Juan; Lin, Xin; Yang, Meixiang
2017-01-01
Signaling lymphocytic activation molecule (SLAM)–associated protein (SAP) mutations in X-linked lymphoproliferative disease (XLP) lead to defective NKT cell development and impaired humoral immunity. Because of the redundancy of SLAM family receptors (SFRs) and the complexity of SAP actions, how SFRs and SAP mediate these processes remains elusive. Here, we examined NKT cell development and humoral immunity in mice completely deficient in SFR. We found that SFR deficiency severely impaired NKT cell development. In contrast to SAP deficiency, SFR deficiency caused no apparent defect in follicular helper T (TFH) cell differentiation. Intriguingly, the deletion of SFRs completely rescued the severe defect in TFH cell generation caused by SAP deficiency, whereas SFR deletion had a minimal effect on the defective NKT cell development in SAP-deficient mice. These findings suggest that SAP-dependent activating SFR signaling is essential for NKT cell selection; however, SFR signaling is inhibitory in SAP-deficient TFH cells. Thus, our current study revises our understanding of the mechanisms underlying T cell defects in patients with XLP. PMID:28049627
EVOLUTION OF GALAXIES AND THEIR ENVIRONMENTS AT z = 0.1-3 IN COSMOS
DOE Office of Scientific and Technical Information (OSTI.GOV)
Scoville, N.; Benson, A.; Fu, Hai
2013-05-01
Large-scale structures (LSSs) out to z < 3.0 are measured in the Cosmic Evolution Survey (COSMOS) using extremely accurate photometric redshifts (photoz). The K{sub s} -band-selected sample (from Ultra-Vista) is comprised of 155,954 galaxies. Two techniques-adaptive smoothing and Voronoi tessellation-are used to estimate the environmental densities within 127 redshift slices. Approximately 250 statistically significant overdense structures are identified out to z = 3.0 with shapes varying from elongated filamentary structures to more circularly symmetric concentrations. We also compare the densities derived for COSMOS with those based on semi-analytic predictions for a {Lambda}CDM simulation and find excellent overall agreement between themore » mean densities as a function of redshift and the range of densities. The galaxy properties (stellar mass, spectral energy distributions (SEDs), and star formation rates (SFRs)) are strongly correlated with environmental density and redshift, particularly at z < 1.0-1.2. Classifying the spectral type of each galaxy using the rest-frame b - i color (from the photoz SED fitting), we find a strong correlation of early-type galaxies (E-Sa) with high-density environments, while the degree of environmental segregation varies systematically with redshift out to z {approx} 1.3. In the highest density regions, 80% of the galaxies are early types at z = 0.2 compared to only 20% at z = 1.5. The SFRs and the star formation timescales exhibit clear environmental correlations. At z > 0.8, the SFR density is uniformly distributed over all environmental density percentiles, while at lower redshifts the dominant contribution is shifted to galaxies in lower density environments.« less
A COMPARATIVE STUDY OF KNOTS OF STAR FORMATION IN INTERACTING VERSUS SPIRAL GALAXIES
DOE Office of Scientific and Technical Information (OSTI.GOV)
Smith, Beverly J.; Olmsted, Susan; Jones, Keith
2016-03-15
Interacting galaxies are known to have higher global rates of star formation on average than normal galaxies, relative to their stellar masses. Using UV and IR photometry combined with new and published Hα images, we have compared the star formation rates (SFRs) of ∼700 star forming complexes in 46 nearby interacting galaxy pairs with those of regions in 39 normal spiral galaxies. The interacting galaxies have proportionally more regions with high SFRs than the spirals. The most extreme regions in the interacting systems lie at the intersections of spiral/tidal structures, where gas is expected to pile up and trigger starmore » formation. Published Hubble Space Telescope images show unusually large and luminous star clusters in the highest luminosity regions. The SFRs of the clumps correlate with measures of the dust attenuation, consistent with the idea that regions with more interstellar gas have more star formation. For the clumps with the highest SFRs, the apparent dust attenuation is consistent with the Calzetti starburst dust attenuation law. This suggests that the high luminosity regions are dominated by a central group of young stars surrounded by a shell of clumpy interstellar gas. In contrast, the lower luminosity clumps are bright in the UV relative to Hα, suggesting either a high differential attenuation between the ionized gas and the stars, or a post-starburst population bright in the UV but faded in Hα. The fraction of the global light of the galaxies in the clumps is higher on average for the interacting galaxies than for the spirals. Thus either star formation in interacting galaxies is “clumpier” on average, or the star forming regions in interacting galaxies are more luminous, dustier, or younger on average.« less
Little Blue Dots in the Hubble Space Telescope Frontier Fields: Precursors to Globular Clusters?
NASA Astrophysics Data System (ADS)
Elmegreen, Debra Meloy; Elmegreen, Bruce G.
2017-12-01
Galaxies with stellar masses < {10}7.4 {M}ȯ and specific star formation rates {sSFR}> {10}-7.4 yr‑1 were examined on images of the Hubble Space Telescope Frontier Field Parallels for Abell 2744 and MACS J0416.1-02403. They appear as unresolved “Little Blue Dots” (LBDs). They are less massive and have higher specific star formation rates (sSFRs) than “blueberries” studied by Yang et al. and higher sSFRs than “Blue Nuggets” studied by Tacchella et al. We divided the LBDs into three redshift bins and, for each, stacked the B435, V606, and I814 images convolved to the same stellar point-spread function (PSF). Their radii were determined from PSF deconvolution to be ∼80 to ∼180 pc. The high sSFRs suggest that their entire stellar mass has formed in only 1% of the local age of the universe. The sSFRs at similar epochs in local dwarf galaxies are lower by a factor of ∼100. Assuming that the star formation rate is {ε }{ff}{M}{gas}/{t}{ff} for efficiency {ε }{ff}, gas mass M gas, and free-fall time, t ff, the gas mass and gas-to-star mass ratio are determined. This ratio exceeds 1 for reasonable efficiencies, and is likely to be ∼5 even with a high {ε }{ff} of 0.1. We consider whether these regions are forming today’s globular clusters. With their observed stellar masses, the maximum likely cluster mass is ∼ {10}5 {M}ȯ , but if star formation continues at the current rate for ∼ 10{t}{ff}∼ 50 {Myr} before feedback and gas exhaustion stop it, then the maximum cluster mass could become ∼ {10}6 {M}ȯ .
NASA Astrophysics Data System (ADS)
Bendo, G. J.; Miura, R. E.; Espada, D.; Nakanishi, K.; Beswick, R. J.; D'Cruze, M. J.; Dickinson, C.; Fuller, G. A.
2017-11-01
We use Atacama Large Millimeter/submillimeter Array (ALMA) observations of H30α (231.90 GHz) emission from the low-metallicity dwarf galaxy NGC 5253 to measure the star formation rate (SFR) within the galaxy and to test the reliability of SFRs derived from other commonly used metrics. The H30α emission, which originates mainly from the central starburst, yields a photoionizing photon production rate of (1.9 ± 0.3) × 1052 s-1 and an SFR of 0.087 ± 0.013 M⊙ yr-1 based on conversions that account for the low metallicity of the galaxy and for stellar rotation. Among the other star formation metrics we examined, the SFR calculated from the total infrared flux was statistically equivalent to the values from the H30α data. The SFR based on a previously published version of the H α flux that was extinction corrected using Paα and Paβ lines was lower than but also statistically similar to the H30α value. The mid-infrared (22 μm) flux density and the composite star formation tracer based on H α and mid-infrared emission give SFRs that were significantly higher because the dust emission appears unusually hot compared to typical spiral galaxies. Conversely, the 70 and 160 μm flux densities yielded SFRs lower than the H30α value, although the SFRs from the 70 μm and H30α data were within 1σ-2σ of each other. While further analysis on a broader range of galaxies is needed, these results are instructive of the best and worst methods to use when measuring SFR in low-metallicity dwarf galaxies like NGC 5253.
Tracing the Far-Infrared Roles of AGN in Dusty Star-Forming Galaxies
NASA Astrophysics Data System (ADS)
Brown, Arianna; Nayyeri, Hooshang; Cooray, Asantha R.; Mitchell-Wynne, Ketron
2017-01-01
Active galactic nuclei (AGNs) are suggested to play an important role in quenching their host galaxy’s star formation rate (SFR) by heating up and/or consuming the cool gas necessary to create stars. This mechanism is theorized as a critical step in AGN evolutionary models. The efforts to study this effect suffer in part from low-number statistics at high x-ray luminosities (LXR > 1044 ergs/s) for AGNs at z≈1-3, and a lack of separately estimated SFRs for AGN in dusty, star-forming galaxies (DSFGs). In this work, we extend our analysis to build a more complete picture using the variety of available multi-wavelength data in the XBoötes region. The Chandra XBoötes Survey is a 5-ks X-ray survey of the 9.3 square degree Boötes Field of the NOAO Deep Wide-Field Survey, a survey imaged from the optical to the near-IR. We estimate AGN spectral energy distributions and SFRs for ~400 x-ray sources using available data in all four Spitzer IRAC bands, the Spitzer MIPS 24µm band, all five Herschel SPIRE and PACS bands, along with NEWFIRM optical bands. Preliminary results show an exponential correlation between x-ray luminosity and star formation. As a comparison, we will use a stacking technique for the ~500 x-ray sources that were not detected at submillimeter wavelengths, where sources are binned by x-ray luminosity. We will compare these two samples and expect to see a difference in slope. Using these techniques, we hope to place tighter constraints on the mean SFRs of high-luminosity AGNs inside DSFGs, and determine if x-ray luminosities are independent of average SFRs for our sample in the Boötes field.
NASA Astrophysics Data System (ADS)
Chang, Chan-Kao; Lin, Hsing-Wen; Ip, Wing-Huen; iPTF Team
2016-10-01
In order to look for kilometer-sized super-fast rotators (large SFRs) and understand the spin-rate distributions of small (i.e. D of several kilometers) asteroids, we have been conducting asteroid rotation period surveys of large sky area using intermediate Palomar Transient Factory (iPTF) since 2014. So far, we have observed 261 deg2 with 20 min cadence, 188 deg2 with 10 min cadence, and 65 deg2 with 5 min cadence. From these surveys, we found that the spin-rate distributions of small asteroids at different locations in the main-belt are very similar. Moreover, the distributions of asteroids with 3 < D < 15 km show number decrease along with increase of spin rate for frequency > 5 rev/day, and that of asteroids with D < 3 km have a significant number drop at frequency = 5 rev/day. However, we only discover two new large SFRs and 24 candidates. Comparing with the ordinary asteroids, the population of large SFR seems to be far less than the whole asteroid population. This might indicate a peculiar group of asteroid for large SFRs.
FY 2017-Progress Report on the Design and Construction of the Sodium Loop SMT-3
DOE Office of Scientific and Technical Information (OSTI.GOV)
Natesan, K.; Momozaki, Y.
This report provides an update on the design of a forced-convection sodium loop to be used for the evaluation of sodium compatibility of advanced Alloy 709 with emphasis on long term exposures of tensile, creep, fatigue, creep fatigue, and fracture toughness ASTM-size specimens in support of ASME Code qualification and NRC licensing. The report is a deliverable (Level 4) in FY17 (M4AT-17AN1602094), under the Work Package AT-17AN160209, “Sodium Compatibility” performed by Argonne National Laboratory (ANL), as part of the Advanced Materials Program for the Advanced Reactor Technology. This work package enables the development of advanced structural materials by providing corrosion,more » microstructure, and mechanical property data from the standpoint of sodium compatibility of advanced structural alloys. The first sodium loop (SMT-1) with a single tank was constructed in 2011 at ANL and has been in operation for exposure of subsize sheet specimens of advanced alloys at a single temperature. The second sodium loop with dual tanks (SMT-2) was constructed in 2013 and has been in operation for the exposure of subsize sheet specimens of advanced alloys at two different temperatures. The current loop (SMT-3) has been designed to incorporate sufficient chamber capacity to expose a large number of ASTM-size specimens to evaluate the sodium effects on tensile, creep, fatigue, creep-fatigue, and fracture toughness properties, in support of ASME Code Qualification and USNRC Licensing. The design of individual components for the third sodium loop SMT-3 is almost complete. The design also has been sent to an outside vendor for piping analysis to be in compliance with ASME Code. A purchase order has been placed with an outside vendor for the fabrication of major components such as the specimen exposure tanks. However, we have contracted with another vendor to establish the piping design in compliance with ASME design codes. The piping design was completed in FY2017 and the information is being transmitted to the tank fabricator. The SMT-3 loop will be located in Building 206 adjacent to the currently operating SMT-2 loop. In addition, we have demolished the aged power supply system in Building 206 and installed a new transformer, wiring, and power panels for the new loop. Procurement of some of the long lead items such as valves, EM pumps, EM flowmeters, etc. is in progress and will continue in FY 2018. The construction of components such as cold trap, economizers, piping arrangement etc. will be performed in the central shops at ANL. About 150 liters of sodium for the loop will be procured in early FY2018. The loop system is designed to circulate sodium through the sample tanks and the associated loop without an operator for an extended period of time. With the three sodium loops (with single-tank, dual-tank and four–tanks), materials can be tested at different sodium temperatures, and large tensile, creep, fatigue, creep-fatigue, and fracture toughness specimens can be exposed to sodium for extended periods of time and generate data on mechanical properties in support of ASME Code Qualification and USNRC Licensing of advanced Alloy 709 for use as a structural material in SFRs.« less
VLBA SURVEYS OF OH MASERS IN STAR-FORMING REGIONS. I. SATELLITE LINES
DOE Office of Scientific and Technical Information (OSTI.GOV)
Ruiz-Velasco, A. E.; Felli, D.; Migenes, V.
2016-05-10
Using the Very Long Baseline Array we performed a high-resolution OH maser survey in Galactic star-forming regions (SFRs). We observed all the ground state spectral lines: the main lines at 1665 and 1667 MHz and the satellite lines at 1612 and 1720 MHz. Due to the exceptionality of finding satellite lines in SFRs, we will focus our discussion on those lines. In our sample of 41 OH maser sources, five (12%) showed the 1612 MHz line and ten (24%) showed the 1720 MHz line, with only one source showing both lines. We find that 1720 MHz emission is correlated withmore » the presence of H ii regions, suggesting that this emission could be used to diagnose or trace high-mass star formation. We include an analysis of the possible mechanisms that could be causing this correlation as well as assessing the possible relationships between lines in our sample. In particular, the presence of magnetic fields seems to play an important role as we found Zeeman splitting in four of our sources (W75 N, W3(OH), W51 and NGC 7538). Our results have implications for current understanding of the formation of high-mass stars as well as on the masing processes present in SFRs.« less
DOE Office of Scientific and Technical Information (OSTI.GOV)
Fumagalli, Mattia; Labbé, Ivo; Patel, Shannon G.
We investigate star formation rates (SFRs) of quiescent galaxies at high redshift (0.3 < z < 2.5) using 3D-HST WFC3 grism spectroscopy and Spitzer mid-infrared data. We select quiescent galaxies on the basis of the widely used UVJ color-color criteria. Spectral energy distribution (SED) fitting (rest-frame optical and near-IR) indicates very low SFRs for quiescent galaxies (sSFR ∼ 10{sup –12} yr{sup –1}). However, SED fitting can miss star formation if it is hidden behind high dust obscuration and ionizing radiation is re-emitted in the mid-infrared. It is therefore fundamental to measure the dust-obscured SFRs with a mid-IR indicator. We stackmore » the MIPS 24 μm images of quiescent objects in five redshift bins centered on z = 0.5, 0.9, 1.2, 1.7, 2.2 and perform aperture photometry. Including direct 24 μm detections, we find sSFR ∼ 10{sup –11.9} × (1 + z){sup 4} yr{sup –1}. These values are higher than those indicated by SED fitting, but at each redshift they are 20-40 times lower than those of typical star-forming galaxies. The true SFRs of quiescent galaxies might be even lower, as we show that the mid-IR fluxes can be due to processes unrelated to ongoing star formation, such as cirrus dust heated by old stellar populations and circumstellar dust. Our measurements show that star formation quenching is very efficient at every redshift. The measured SFR values are at z > 1.5 marginally consistent with the ones expected from gas recycling (assuming that mass loss from evolved stars refuels star formation) and well below that at lower redshifts.« less
A {sup 13}CO SURVEY OF INTERMEDIATE-MASS STAR-FORMING REGIONS
DOE Office of Scientific and Technical Information (OSTI.GOV)
Lundquist, Michael J.; Kobulnicky, Henry A.; Kerton, Charles R.
2015-06-10
We have conducted a {sup 13}CO survey of a sample of 128 infrared color-selected intermediate-mass star-forming region (IM SFR) candidates. We utilized the Onsala 20 m telescope to observe {sup 13}CO (1–0) toward 67 northern IM SFRs, used the 12 m Atacama Pathfinder Experiment telescope to observe {sup 13}CO (2–1) toward 22 southern IM SFRs, and incorporated an additional 39 sources from the Boston University Five College Radio Astronomy Observatory Galactic Ring Survey which observed {sup 13}CO (1–0). We detect {sup 13}CO (1–0) in 58 of the 67 northern sources and {sup 13}CO (2–1) in 20 of the 22 southernmore » sources. The mean molecular column densities and {sup 13}CO linewidths in the inner Galaxy are higher by factors of 3.4 and 1.5, respectively, than the outer Galaxy. We attribute this difference to molecular clouds in the inner Galaxy being more massive and hosting star forming regions with higher luminosities on average than the outer Galaxy. IM SFRs have mean a molecular column density of 7.89 × 10{sup 21} cm{sup −2}, a factor of 3.1 lower than that for a sample of high-mass regions, and have a mean {sup 13}CO linewidth of 1.84 km s{sup −1}, a factor of 1.5 lower than that for high-mass regions. We demonstrate a correlation between {sup 13}CO linewidth and infrared luminosity as well as between molecular column density and infrared luminosity for the entire sample of intermediate-mass and high-mass regions. IM SFRs appear to form in distinctly lower-density environments with mean linewidths and beam-averaged column densities a factor of several lower than high-mass star-forming regions.« less
DOE Office of Scientific and Technical Information (OSTI.GOV)
Simones, Jacob E.; Skillman, Evan D.; Weisz, Daniel R.
We have used optical observations of resolved stars from the Panchromatic Hubble Andromeda Treasury to measure the recent (<500 Myr) star formation histories (SFHs) of 33 far-UV (FUV)-bright regions in M31. The region areas ranged from ∼10{sup 4} to 10{sup 6} pc{sup 2}, which allowed us to test the reliability of FUV flux as a tracer of recent star formation on subkiloparsec scales. The star formation rates (SFRs) derived from the extinction-corrected observed FUV fluxes were, on average, consistent with the 100 Myr mean SFRs of the SFHs to within the 1σ scatter. Overall, the scatter was larger than themore » uncertainties in the SFRs and particularly evident among the smallest regions. The scatter was consistent with an even combination of discrete sampling of the initial mass function and high variability in the SFHs. This result demonstrates the importance of satisfying both the full-IMF and the constant-SFR assumptions for obtaining precise SFR estimates from FUV flux. Assuming a robust FUV extinction correction, we estimate that a factor of 2.5 uncertainty can be expected in FUV-based SFRs for regions smaller than 10{sup 5} pc{sup 2} or a few hundred parsecs. We also examined ages and masses derived from UV flux under the common assumption that the regions are simple stellar populations (SSPs). The SFHs showed that most of the regions are not SSPs, and the age and mass estimates were correspondingly discrepant from the SFHs. For those regions with SSP-like SFHs, we found mean discrepancies of 10 Myr in age and a factor of 3-4 in mass. It was not possible to distinguish the SSP-like regions from the others based on integrated FUV flux.« less
VizieR Online Data Catalog: SFiNCs: X-ray, IR and membership catalogs (Getman+, 2017)
NASA Astrophysics Data System (ADS)
Getman, K. V.; Broos, P. S.; Kuhn, M. A.; Feigelson, E. D.; Richert, A. J. W.; Ota, Y.; Bate, M. R.; Garmire, G. P.
2017-06-01
Sixty five X-ray observations for the 22 Star Formation in Nearby Clouds (SFiNCs) star-forming regions (SFRs) (see tables 1 and 2), made with the imaging array on the Advanced CCD Imaging Spectrometer (ACIS), were pulled from the Chandra archive (spanning 2000 Jan to 2015 Apr; see table 2). Our final Chandra-ACIS catalog for the 22 SFiNCs SFRs comprises 15364 X-ray sources (Tables 3 and 4 and section 3.2). To obtain MIR photometry for X-ray objects and to identify and measure MIR photometry for additional non-Chandra disky stars that were missed in previous studies of the SFiNCs regions (typically faint YSOs), we have reduced the archived Spitzer-IRAC data by homogeneously applying the MYStIX-based Spitzer-IRAC data reduction methods of Kuhn+ (2013, J/ApJS/209/29) to the 423 Astronomical Object Request (AORs) data sets for the 22 SFiNCs SFRs (Table 5). As in MYStIX, here the SFiNCs IRAC source catalog retains all point sources with the photometric signal-to-noise ratio >5 in both [3.6] and [4.5] channels. This catalog covers the 22 SFiNCs SFRs and their vicinities on the sky and comprises 1638654 IRAC sources with available photometric measurements for 100%, 100%, 29%, and 23% of these sources in the 3.6, 4.5, 5.8, and 8.0um bands, respectively (see table 6 and section 3.4). Source position cross correlations between the SFiNCs Chandra X-ray source catalog and an IR catalog, either the "cut-out" IRAC or 2MASS, were made using the steps described in section 3.5. Tables 7 and 8 provide the list of 8492 SFiNCs probable cluster members (SPCMs) and their main IR and X-ray properties (see section 4). (9 data files).
NASA Astrophysics Data System (ADS)
Shipley, Heath V.
2016-01-01
For decades, significant work has been applied to calibrating emission from the ultra-violet, nebular emission lines, far-infrared, X-ray and radio as tracers of the star-formation rate (SFR) in distant galaxies. Understanding the exact rate of star-formation and how it evolves with time and galaxy mass has deep implications for how galaxies form. The co-evolution of star-formation and supermassive black hole (SMBH) accretion is one of the key problems in galaxy formation theory. But, many of these SFR indicators are influenced by SMBH accretion in galaxies and result in unreliable SFRs. Utilizing the luminous polycyclic aromatic hydrocarbon (PAH) emission features, I provide a new robust SFR calibration using the luminosity emitted from the PAHs at 6.2μm, 7.7μm and 11.3μm to solve this. The PAH features emit strongly in the mid-infrared (mid-IR; 5-25μm) mitigating dust extinction, containing on average 5-10% of the total IR luminosity in galaxies. I use a sample of 105 star-forming galaxies covering a range of total IR luminosity, LIR = L(8-1000μm) = 109 - 1012 L⊙ and redshift 0 < z < 0.4, with mid-IR spectroscopy from the Spitzer Infrared Spectrograph (IRS), and data covering other SFR indicators (Hα emission and rest-frame 24μm continuum emission). The PAH luminosity correlates linearly with the SFR as measured by the Hα luminosity (corrected for attenuation using the mono-chromatic rest-frame 24μm emission), with a tight scatter of <0.15 dex. The scatter is comparable to that between SFRs derived from the Paα and dust-corrected Hα emission lines. We present a case study in advance of JWST, which will be capable of measuring SFRs (from 8μm rest-frame photometry, i.e. PAHs) in distant galaxies (z ≤ 2) with JWST/MIRI to SFRs as low as ~10 M⊙yr-1, because the PAH features are so bright. We use Spitzer/IRS observations of PAH features in lensed star-forming galaxies at 1 < z < 3 to demonstrate the utility of the PAHs to derive SFRs that agree with those available from Paα. This new SFR indicator will be useful for probing the peak of the SFR density in the universe (1 < z < 3) and for studying the co-evolution of star-formation and supermassive blackhole accretion contemporaneously in a galaxy.
Spatially Resolved Spectroscopy of Narrow-line Seyfert 1 Host Galaxies
NASA Astrophysics Data System (ADS)
Scharwächter, J.; Husemann, B.; Busch, G.; Komossa, S.; Dopita, M. A.
2017-10-01
We present optical integral field spectroscopy for five z< 0.062 narrow-line Seyfert 1 (NLS1) galaxies, probing their host galaxies at ≳ 2{--}3 {kpc} scales. Emission lines from the active galactic nucleus (AGN) and the large-scale host galaxy are analyzed separately, based on an AGN-host decomposition technique. The host galaxy gas kinematics indicates large-scale gas rotation in all five sources. At the probed scales of ≳ 2{--}3 {kpc}, the host galaxy gas is found to be predominantly ionized by star formation without any evidence of a strong AGN contribution. None of the five objects shows specific star formation rates (SFRs) exceeding the main sequence of low-redshift star-forming galaxies. The specific SFRs for MCG-05-01-013 and WPVS 007 are roughly consistent with the main sequence, while ESO 399-IG20, MS 22549-3712, and TON S180 show lower specific SFRs, intermediate to the main sequence and the red quiescent galaxies. The host galaxy metallicities, derived for the two sources with sufficient data quality (ESO 399-IG20 and MCG-05-01-013), indicate central oxygen abundances just below the low-redshift mass-metallicity relation. Based on this initial case study, we outline a comparison of AGN and host galaxy parameters as a starting point for future extended NLS1 studies with similar methods.
NASA Astrophysics Data System (ADS)
Maragkoudakis, A.; Zezas, A.; Ashby, M. L. N.; Willner, S. P.
2018-04-01
We present activity demographics and host-galaxy properties of infrared-selected galaxies in the local Universe, using the representative Star Formation Reference Survey (SFRS). Our classification scheme is based on a combination of optical emission-line diagrams (BPT) and infrared (IR)-colour diagnostics. Using the weights assigned to the SFRS galaxies based on its parent sample, a far-IR-selected sample comprises 71 per cent H II galaxies, 13 per cent Seyferts, 3 per cent transition objects (TOs), and 13 per cent low-ionization nuclear emission-line regions (LINERs). For the SFRS H II galaxies, we derive nuclear star formation rates and gas-phase metallicities. We measure host-galaxy metallicities for all galaxies with available long-slit spectroscopy and abundance gradients for a subset of 12 face-on galaxies. The majority of H II galaxies show a narrow range of metallicities, close to solar, and flat metallicity profiles. Based on their host-galaxy and nuclear properties, the dominant ionizing source in the far-infrared selected TOs is star-forming activity. LINERs are found mostly in massive hosts (median of 1010.5 M⊙), median L(60 μm) = 109 L⊙, median dust temperatures of F60/F100 = 0.36, and median LH α surface density of 1040.2 erg s-1kpc-2, indicating older stellar populations as their main ionizing source rather than active galactic nucleus activity.
Nuclear fuel requirements for the American economy - A model
NASA Astrophysics Data System (ADS)
Curtis, Thomas Dexter
A model is provided to determine the amounts of various fuel streams required to supply energy from planned and projected nuclear plant operations, including new builds. Flexible, user-defined scenarios can be constructed with respect to energy requirements, choices of reactors and choices of fuels. The model includes interactive effects and extends through 2099. Outputs include energy provided by reactors, the number of reactors, and masses of natural Uranium and other fuels used. Energy demand, including electricity and hydrogen, is obtained from US DOE historical data and projections, along with other studies of potential hydrogen demand. An option to include other energy demand to nuclear power is included. Reactor types modeled include (thermal reactors) PWRs, BWRs and MHRs and (fast reactors) GFRs and SFRs. The MHRs (VHTRs), GFRs and SFRs are similar to those described in the 2002 DOE "Roadmap for Generation IV Nuclear Energy Systems." Fuel source choices include natural Uranium, self-recycled spent fuel, Plutonium from breeder reactors and existing stockpiles of surplus HEU, military Plutonium, LWR spent fuel and depleted Uranium. Other reactors and fuel sources can be added to the model. Fidelity checks of the model's results indicate good agreement with historical Uranium use and number of reactors, and with DOE projections. The model supports conclusions that substantial use of natural Uranium will likely continue to the end of the 21st century, though legacy spent fuel and depleted uranium could easily supply all nuclear energy demand by shifting to predominant use of fast reactors.
Delayed or No Feedback? Gas Outflows in Type 2 AGNs. III
DOE Office of Scientific and Technical Information (OSTI.GOV)
Woo, Jong-Hak; Son, Donghoon; Bae, Hyun-Jin, E-mail: woo@astro.snu.ac.kr, E-mail: hjbae@galaxy.yonsei.ac.kr
2017-04-20
We present gas kinematics based on the [O iii] λ 5007 line and their connection to galaxy gravitational potential, active galactic nucleus (AGN) energetics, and star formation, using a large sample of ∼110,000 AGNs and star-forming (SF) galaxies at z < 0.3. Gas and stellar velocity dispersions are comparable to each other in SF galaxies, indicating that the ionized gas kinematics can be accounted by the gravitational potential of host galaxies. In contrast, AGNs clearly show non-gravitational kinematics, which is comparable to or stronger than the virial motion caused by the gravitational potential. The [O iii] velocity–velocity dispersion (VVD) diagrammore » dramatically expands toward high values as a function of AGN luminosity, implying that the outflows are AGN-driven, while SF galaxies do not show such a trend. We find that the fraction of AGNs with a signature of outflow kinematics, steeply increases with AGN luminosity and Eddington ratio. In particular, the majority of luminous AGNs presents strong non-gravitational kinematics in the [O iii] profile. AGNs with strong outflow signatures show on average similar specific star formation rates (sSFRs) to those of star-forming galaxies. In contrast, AGNs with weak or no outflows have an order of magnitude lower sSFRs, suggesting that AGNs with current strong outflows do now show any negative AGN feedback and that it may take dynamical time to impact on star formation over galactic scales.« less
DOE Office of Scientific and Technical Information (OSTI.GOV)
Le Mer, J.; Garzenne, C.; Lemasson, D.
In the frame of the French Act of June 28, 2006 on 'a sustainable management of nuclear materials and radioactive waste' EDF R and D assesses various research scenarios of transition between the actual French fleet and a Generation IV fleet with a closed fuel cycle where plutonium is multi-recycled. The basic scenarios simulate a deployment of 60 GWe of Sodium-cooled Fast Reactors (SFRs) in two steps: one third from 2040 to 2050 and the rest from 2080 to 2100 (scenarios 2040). These research scenarios assume that SFR technology will be ready for industrial deployment in 2040. One of themore » many sensitivity analyses that EDF, as a nuclear power plant operator, must evaluate is the impact of a delay of SFR technology in terms of uranium consumptions, plutonium needs and fuel cycle utilities gauging. The sensitivity scenarios use the same assumptions as scenarios 2040 but they simulate a different transition phase: SFRs are deployed in one step between 2080 and 2110 (scenarios 2080). As the French Act states to conduct research on minor actinides (MA) management, we studied different options for 2040 and 2080 scenarios: no MA transmutation, americium transmutation in heterogeneous mode based on americium Bearing Blankets (AmBB) in SFRs and all MA transmutation in heterogeneous mode based on MA Bearing Blankets (MABB). Moreover, we studied multiple parameters that could impact the deployment of these reactors (SFR load factor, increase of the use of MOX in Light Water Reactors, increase of the cooling time in spent nuclear fuel storage...). Each scenario has been computed with the EDF R and D fuel cycle simulation code TIRELIRE-STRATEGIE and optimized to meet various fuel cycle constraints such as using the reprocessing facility with long period of constant capacity, keeping the temporary stored mass of plutonium and MA under imposed limits, recycling older assemblies first... These research scenarios show that the transition from the current PWR fleet to an equivalent fleet of Generation IV SFR can follow different courses. The design of SFR-V2B that we used in our studies needs a high inventory of plutonium resulting in tension on this resource. Several options can be used in order to loosen this tension: our results lead to favour the use of axial breeding blanket in SFR. Load factor of upcoming reactors has to be regarded with attention as it has a high impact on plutonium resource for a given production of electricity. The deployment of SFRs beginning in 2080 instead of 2040 following the scenarios we described creates higher tensions on reprocessing capacity, separated plutonium storage and spent fuel storage. In the frame of the French Act, we studied minor actinides transmutation. The flux of MA in all fuel cycle plants is really high, which will lead to decay heat, a and neutron emission related problems. In terms of reduction of MA inventories, the deployment of MA transmutation cycle must not delay the installation of SFRs. The plutonium production in MABB and AmBB does not allow reducing the use of axial breeding blankets. The impact of MA or Am transmutation over the high level waste disposal is more important if the SFRs are deployed later. Transmutation option (americium or all MA) does not have a significant impact on the number of canister produced nor on its long-term thermal properties. (authors)« less
GAMA/H-ATLAS: the ultraviolet spectral slope and obscuration in galaxies
NASA Astrophysics Data System (ADS)
Wijesinghe, D. B.; da Cunha, E.; Hopkins, A. M.; Dunne, L.; Sharp, R.; Gunawardhana, M.; Brough, S.; Sadler, E. M.; Driver, S.; Baldry, I.; Bamford, S.; Liske, J.; Loveday, J.; Norberg, P.; Peacock, J.; Popescu, C. C.; Tuffs, R.; Andrae, E.; Auld, R.; Baes, M.; Bland-Hawthorn, J.; Buttiglione, S.; Cava, A.; Cameron, E.; Conselice, C. J.; Cooray, A.; Croom, S.; Dariush, A.; Dezotti, G.; Dye, S.; Eales, S.; Frenk, C.; Fritz, J.; Hill, D.; Hopwood, R.; Ibar, E.; Ivison, R.; Jarvis, M.; Jones, D. H.; van Kampen, E.; Kelvin, L.; Kuijken, K.; Maddox, S. J.; Madore, B.; Michałowski, M. J.; Nichol, B.; Parkinson, H.; Pascale, E.; Pimbblet, K. A.; Pohlen, M.; Prescott, M.; Rhodighiero, G.; Robotham, A. S. G.; Rigby, E. E.; Seibert, M.; Sergeant, S.; Smith, D. J. B.; Temi, P.; Sutherland, W.; Taylor, E.; Thomas, D.; van der Werf, P.
2011-08-01
We use multiwavelength data from the Galaxy And Mass Assembly (GAMA) and Herschel-ATLAS (H-ATLAS) surveys to compare the relationship between various dust obscuration measures in galaxies. We explore the connections between the ultraviolet (UV) spectral slope, β, the Balmer decrement and the far-infrared (FIR) to 150 nm far-ultraviolet (FUV) luminosity ratio. We explore trends with galaxy mass, star formation rate (SFR) and redshift in order to identify possible systematics in these various measures. We reiterate the finding of other authors that there is a large scatter between the Balmer decrement and the β parameter, and that β may be poorly constrained when derived from only two broad passbands in the UV. We also emphasize that FUV-derived SFRs, corrected for dust obscuration using β, will be overestimated unless a modified relation between β and the attenuation factor is used. Even in the optimum case, the resulting SFRs have a significant scatter, well over an order of magnitude. While there is a stronger correlation between the IR-to-FUV luminosity ratio and β parameter than with the Balmer decrement, neither of these correlations are particularly tight, and dust corrections based on β for high-redshift galaxy SFRs must be treated with caution. We conclude with a description of the extent to which the different obscuration measures are consistent with each other as well as the effects of including other galactic properties on these correlations.
The Ultraviolet and Infrared Star Formation Rates of Compact Group Galaxies: An Expanded Sample
NASA Technical Reports Server (NTRS)
Lenkic, Laura; Tzanavaris, Panayiotis; Gallagher, Sarah C.; Desjardins, Tyler D.; Walker, Lisa May; Johnson, Kelsey E.; Fedotov, Konstantin; Charlton, Jane; Cardiff, Ann H.; Durell, Pat R.
2016-01-01
Compact groups of galaxies provide insight into the role of low-mass, dense environments in galaxy evolution because the low velocity dispersions and close proximity of galaxy members result in frequent interactions that take place over extended time-scales. We expand the census of star formation in compact group galaxies by Tzanavaris et al. (2010) and collaborators with Swift UVOT, Spitzer IRAC and MIPS 24 m photometry of a sample of 183 galaxies in 46 compact groups. After correcting luminosities for the contribution from old stellar populations, we estimate the dust-unobscured star formation rate (SFRUV) using the UVOT uvw2 photometry. Similarly, we use the MIPS 24 m photometry to estimate the component of the SFR that is obscured by dust (SFRIR). We find that galaxies which are MIR-active (MIR-red), also have bluer UV colours, higher specific SFRs, and tend to lie in Hi-rich groups, while galaxies that are MIR-inactive (MIR-blue) have redder UV colours, lower specific SFRs, and tend to lie in Hi-poor groups. We find the SFRs to be continuously distributed with a peak at about 1 M yr1, indicating this might be the most common value in compact groups. In contrast, the specific SFR distribution is bimodal, and there is a clear distinction between star-forming and quiescent galaxies. Overall, our results suggest that the specific SFR is the best tracer of gas depletion and galaxy evolution in compact groups.
TRACING THE DEVELOPMENT OF TYPEWRITING SKILLS IN AN ADAPTIVE E-LEARNING ENVIRONMENT.
van den Bergh, Mattis; Hofman, Abe D; Schmittmann, Verena D; van der Maas, Han L J
2015-12-01
Typewriting studies which compare novice and expert typists have suggested that highly trained typing skills involve cognitive process with an inner and outer loop, which regulate keystrokes and words, respectively. The present study investigates these loops longitudinally, using multi-level modeling of 1,091,707 keystroke latencies from 62 children (M age=12.6 yr.) following an online typing course. Using finger movement repetition as indicator of the inner loop and words typed as indicator of the outer loop, practicing keystroke latencies resulted in different developmental curves for each loop. Moreover, based on plateaus in the developmental curves, the inner loop seemed to require less practice to develop than the outer loop.
Hybrid nodal loop metal: Unconventional magnetoresponse and material realization
NASA Astrophysics Data System (ADS)
Zhang, Xiaoming; Yu, Zhi-Ming; Lu, Yunhao; Sheng, Xian-Lei; Yang, Hui Ying; Yang, Shengyuan A.
2018-03-01
A nodal loop is formed by a band crossing along a one-dimensional closed manifold, with each point on the loop a linear nodal point in the transverse dimensions, and can be classified as type I or type II depending on the band dispersion. Here, we propose a class of nodal loops composed of both type-I and type-II points, which are hence termed as hybrid nodal loops. Based on first-principles calculations, we predict the realization of such loops in the existing electride material Ca2As . For a hybrid loop, the Fermi surface consists of coexisting electron and hole pockets that touch at isolated points for an extended range of Fermi energies, without the need for fine-tuning. This leads to unconventional magnetic responses, including the zero-field magnetic breakdown and the momentum-space Klein tunneling observable in the magnetic quantum oscillations, as well as the peculiar anisotropy in the cyclotron resonance.
Connections between Star Cluster Populations and Their Host Galaxy Nuclear Rings
NASA Astrophysics Data System (ADS)
Ma, Chao; de Grijs, Richard; Ho, Luis C.
2018-04-01
Nuclear rings are excellent laboratories for probing diverse phenomena such as the formation and evolution of young massive star clusters and nuclear starbursts, as well as the secular evolution and dynamics of their host galaxies. We have compiled a sample of 17 galaxies with nuclear rings, which are well resolved by high-resolution Hubble and Spitzer Space Telescope imaging. For each nuclear ring, we identified the ring star cluster population, along with their physical properties (ages, masses, and extinction values). We also determined the integrated ring properties, including the average age, total stellar mass, and current star formation rate (SFR). We find that Sb-type galaxies tend to have the highest ring stellar mass fraction with respect to the host galaxy, and this parameter is correlated with the ring’s SFR surface density. The ring SFRs are correlated with their stellar masses, which is reminiscent of the main sequence of star-forming galaxies. There are striking correlations between star-forming properties (i.e., SFR and SFR surface density) and nonaxisymmetric bar parameters, appearing to confirm previous inferences that strongly barred galaxies tend to have lower ring SFRs, although the ring star formation histories turn out to be significantly more complicated. Nuclear rings with higher stellar masses tend to be associated with lower cluster mass fractions, but there is no such relation for the ages of the rings. The two youngest nuclear rings in our sample, NGC 1512 and NGC 4314, which have the most extreme physical properties, represent the young extremity of the nuclear ring age distribution.
Roe, S C
1997-01-01
Evaluate the mechanical properties of twist, loop, double loop, double-wrap and loop/twist cerclage. The initial tension generated by 18 cerclage of each type was determined using a materials testing machine after tying around a testing jig. Six wires from each type were distracted and the initial stiffness and yield load were determined. Yield behavior was further investigated in six wires of each type by determining the load required to reduce cerclage tension below 30 Newton (N) following and incremental (50 N) stepwise load and unload regimen. The amount of collapse of the simulated bone fragments that resulted in the reduction of initial tension to 30 N was measured for the final six wires of each group. Data were analyzed by analysis of variance and a multiple comparison test. Twist type cerclage generated less tension than loop-type cerclage. The yield load of these two types was similar. Double-loop and double-wrap cerclage generated superior tension and resisted a greater load before loosening. Loop/twist cerclage had an intermediate initial tension but had the greatest resistance to loading. In the collapse test, the greater the initial tension, the more collapse could occur before the wire was loose. For all types of cerclage wire fixation, a reduction of diameter of the testing jig of more than 1% caused loosening. Double-loop and double-wrap cerclage provide greater compression of fragments and resist loads associated with weight-bearing better than the twist and loop methods. Loop/twist cerclage may have advantages because of their superior resistance to loading. All cerclage will loosen if fracture fragments collapse.
Modeling and Validation of Sodium Plugging for Heat Exchangers in Sodium-cooled Fast Reactor Systems
DOE Office of Scientific and Technical Information (OSTI.GOV)
Ferroni, Paolo; Tatli, Emre; Czerniak, Luke
The project “Modeling and Validation of Sodium Plugging for Heat Exchangers in Sodium-cooled Fast Reactor Systems” was conducted jointly by Westinghouse Electric Company (Westinghouse) and Argonne National Laboratory (ANL), over the period October 1, 2013- March 31, 2016. The project’s motivation was the need to provide designers of Sodium Fast Reactors (SFRs) with a validated, state-of-the-art computational tool for the prediction of sodium oxide (Na 2O) deposition in small-diameter sodium heat exchanger (HX) channels, such as those in the diffusion bonded HXs proposed for SFRs coupled with a supercritical CO 2 (sCO 2) Brayton cycle power conversion system. In SFRs,more » Na 2O deposition can potentially occur following accidental air ingress in the intermediate heat transport system (IHTS) sodium and simultaneous failure of the IHTS sodium cold trap. In this scenario, oxygen can travel through the IHTS loop and reach the coldest regions, represented by the cold end of the sodium channels of the HXs, where Na 2O precipitation may initiate and continue. In addition to deteriorating HX heat transfer and pressure drop performance, Na 2O deposition can lead to channel plugging especially when the size of the sodium channels is small, which is the case for diffusion bonded HXs whose sodium channel hydraulic diameter is generally below 5 mm. Sodium oxide melts at a high temperature well above the sodium melting temperature such that removal of a solid plug such as through dissolution by pure sodium could take a lengthy time. The Sodium Plugging Phenomena Loop (SPPL) was developed at ANL, prior to this project, for investigating Na 2O deposition phenomena within sodium channels that are prototypical of the diffusion bonded HX channels envisioned for SFR-sCO 2 systems. In this project, a Computational Fluid Dynamic (CFD) model capable of simulating the thermal-hydraulics of the SPPL test section and provided with Na 2O deposition prediction capabilities, was developed. This state-of-the-art computational tool incorporates a first-principles Na 2O deposition model developed by ANL, and combines it with predictive capabilities for the spatial and temporal variation of temperature, velocity, dissolved oxygen concentration, and wall temperature under flowing sodium conditions. The CFD model was validated under no-deposition conditions using experimental data collected with the SPPL, demonstrating the model’s capability to predict the thermal-hydraulics of the SPPL test section within the measurement uncertainty characterizing the SPPL instrumentation. The model’s deposition prediction capability was not, however, validated as the SPPL could not be operated under plugging conditions during the project, resulting in the lack of deposition data with adequate pedigree for a CFD model validation. Two novel diagnostic techniques to detect and characterize Na 2O deposits, i.e. Ultrasonic Time Domain Reflectometry (UTDR) and Potential Drop (PD) techniques, were developed to ultimately assist in the validation effort under plugging conditions, which can be performed once the SPPL becomes operational. This development effort consisted first in demonstrating, analytically and/or computationally, the capability of these techniques to diagnose Na 2O deposits inside of small channels (particularly the deposit’s thickness), and subsequently in the fabrication and testing of prototypical UTDR and PD instrumentation. The testing, performed on mockups of the SPPL test section, demonstrated the capability of these techniques to detect and characterize material discontinuities like those induced by sodium oxide deposition on stainless steel channel walls. Because of the mentioned impossibility to run the SPPL in a plugging mode, the developed instrumentation could not be tested in-situ, i.e. at the SPPL while deposits are being formed inside of the SPPL test section. Recommended future work includes a possible enhancement in the CFD modeling technique and installation of the developed UTDR and PD instrumentation on the test section, followed by plugging tests to be conducted with the SPPL. The installation of the UTDR and PD diagnostic instrumentation on the SPPL test section will allow collection of Na 2O deposition data after the onset of deposition to nearly complete channel plugging, which can ultimately be used for the validation of the CFD model.« less
NASA Astrophysics Data System (ADS)
Yamamoto, Tatsumi; Kawasaki, Hiroyuki; Mori, Hidetoshi
2017-11-01
Loop type bubble columns have good performance of liquid circulation and mass transfer by airlift effect, where the liquid circulation time is an important measurable characteristic parameter. This parameter is affected by the column construction, the aspect ratio of the column, the cross-sectional area ratio of down comer to riser (R), and the superficial gas velocity in the riser (UGR). In this work, the mean gas holdup and the liquid circulation time (TC) have been measured in four types of loop airlift type bubble column: concentric tube internal loop airlift type, rectangular internal loop airlift type, external loop airlift type, external loop airlift with separator. Air and tap water were used as gas and liquid phase, respectively. The results have demonstrated that the mean gas holdup in riser increases in proportion to UGR, and that it in downcomer changes according to the geometric parameters of each bubble column. TC has been found to conform to an empirical equation which depends on UGR and the length of draft tube or division plate in the region of 0.33 < R < 1.
Yamaguchi, Motonori; Logan, Gordon D; Li, Vanessa
2013-08-01
Does response selection select words or letters in skilled typewriting? Typing performance involves hierarchically organized control processes: an outer loop that controls word level processing, and an inner loop that controls letter (or keystroke) level processing. The present study addressed whether response selection occurs in the outer loop or the inner loop by using the psychological refractory period (PRP) paradigm in which Task1 required typing single words and Task2 required vocal responses to tones. The number of letters (string length) in the words was manipulated to discriminate selection of words from selection of keystrokes. In Experiment 1, the PRP effect depended on string length of words in Task1, suggesting that response selection occurs in the inner loop. To assess contributions of the outer loop, the influence of string length was examined in a lexical-decision task that also involves word encoding and lexical access (Experiment 2), or to-be-typed words were preexposed so outer-loop processing could finish before typing started (Experiment 3). Response time for Task2 (RT2) did not depend on string length with lexical decision, and RT2 still depended on string length with typing preexposed strings. These results support the inner-loop locus of the PRP effect. In Experiment 4, typing was performed as Task2, and the effect of string length on typing RT interacted with stimulus onset asynchrony superadditively, implying that another bottleneck also exists in the outer loop. We conclude that there are at least two bottleneck processes in skilled typewriting. 2013 APA, all rights reserved
Is stellar multiplicity universal? Tight stellar binaries in the Orion Nebula Cluster
NASA Astrophysics Data System (ADS)
Duchêne, Gaspard; Lacour, S.; Moraux, E.; Goodwin, S.; Bouvier, J.
2018-05-01
We present a survey for the tightest visual binaries among 0.3-2 M⊙ members the Orion Nebula Cluster (ONC). Among 42 targets, we discovered 13 new 0{^''.}025-0{^''.}15 companions. Accounting for the Branch bias, we find a companion star fraction (CSF) in the 10-60 au range of 21^{+8}_{-5}%, consistent with that observed in other star-forming regions (SFRs) and twice as high as among field stars; this excess is found with a high level of confidence. Since our sample is dominated by disk-bearing targets, this indicates that disk disruption by close binaries is inefficient, or has not yet taken place, in the ONC. The resulting separation distribution in the ONC drops sharply outside 60 au. These findings are consistent with a scenario in which the initial multiplicity properties, set by the star formation process itself, are identical in the ONC and in other SFRs and subsequently altered by the cluster's dynamical evolution. This implies that the fragmentation process does not depend on the global properties of a molecular cloud, but on the local properties of prestellar cores, and that the latter are self-regulated to be nearly identical in a wide range of environments. These results, however, raise anew the question of the origin of field stars as the tight binaries we have discovered will not be destroyed as the ONC dissolves into the galactic field. It thus appears that most field stars formed in regions that differ from well-studied SFRs in the Solar neighborhood, possibly due to changes in core fragmentation on Gyr timescales.
The Lesser Role of Starbursts in Star Formation at z = 2
NASA Astrophysics Data System (ADS)
Rodighiero, G.; Daddi, E.; Baronchelli, I.; Cimatti, A.; Renzini, A.; Aussel, H.; Popesso, P.; Lutz, D.; Andreani, P.; Berta, S.; Cava, A.; Elbaz, D.; Feltre, A.; Fontana, A.; Förster Schreiber, N. M.; Franceschini, A.; Genzel, R.; Grazian, A.; Gruppioni, C.; Ilbert, O.; Le Floch, E.; Magdis, G.; Magliocchetti, M.; Magnelli, B.; Maiolino, R.; McCracken, H.; Nordon, R.; Poglitsch, A.; Santini, P.; Pozzi, F.; Riguccini, L.; Tacconi, L. J.; Wuyts, S.; Zamorani, G.
2011-10-01
Two main modes of star formation are know to control the growth of galaxies: a relatively steady one in disk-like galaxies, defining a tight star formation rate (SFR)-stellar mass sequence, and a starburst mode in outliers to such a sequence which is generally interpreted as driven by merging. Such starburst galaxies are rare but have much higher SFRs, and it is of interest to establish the relative importance of these two modes. PACS/Herschel observations over the whole COSMOS and GOODS-South fields, in conjunction with previous optical/near-IR data, have allowed us to accurately quantify for the first time the relative contribution of the two modes to the global SFR density in the redshift interval 1.5 < z < 2.5, i.e., at the cosmic peak of the star formation activity. The logarithmic distributions of galaxy SFRs at fixed stellar mass are well described by Gaussians, with starburst galaxies representing only a relatively minor deviation that becomes apparent for SFRs more than four times higher than on the main sequence. Such starburst galaxies represent only 2% of mass-selected star-forming galaxies and account for only 10% of the cosmic SFR density at z ~ 2. Only when limited to SFR > 1000 M sun yr-1, off-sequence sources significantly contribute to the SFR density (46% ± 20%). We conclude that merger-driven starbursts play a relatively minor role in the formation of stars in galaxies, whereas they may represent a critical phase toward the quenching of star formation and morphological transformation in galaxies.
NASA Technical Reports Server (NTRS)
Stefanon, Mauro; Marchesini, Danilo; Rudnick, Gregory H.; Brammer, Gabriel B.; Tease, Katherine Whitaker
2013-01-01
Using public data from the NEWFIRM Medium-Band Survey (NMBS) and the Cosmic Assembly Near-Infrared Deep Extragalactic Legacy Survey (CANDELS), we investigate the population of massive galaxies at z > 3. The main aim of this work is to identify the potential progenitors of z 2 compact, massive, quiescent galaxies (CMQGs), furthering our understanding of the onset and evolution of massive galaxies. Our work is enabled by high-resolution images from CANDELS data and accurate photometric redshifts, stellar masses, and star formation rates (SFRs) from 37-band NMBS photometry. The total number of massive galaxies at z > 3 is consistent with the number of massive, quiescent galaxies (MQGs) at z 2, implying that the SFRs for all of these galaxies must be much lower by z 2. We discover four CMQGs at z > 3, pushing back the time for which such galaxies have been observed. However, the volume density for these galaxies is significantly less than that of galaxies at z < 2 with similar masses, SFRs, and sizes, implying that additional CMQGs must be created in the intervening 1 Gyr between z = 3 and z = 2. We find five star-forming galaxies at z 3 that are compact (Re < 1.4 kpc) and have stellar mass M* > 1010.6M; these galaxies are likely to become members of the massive, quiescent, compact galaxy population at z 2. We evolve the stellar masses and SFRs of each individual z > 3 galaxy adopting five different star formation histories (SFHs) and studying the resulting population of massive galaxies at z = 2.3. We find that declining or truncated SFHs are necessary to match the observed number density of MQGs at z 2, whereas a constant delayed-exponential SFH would result in a number density significantly smaller than observed. All of our assumed SFHs imply number densities of CMQGs at z 2 that are consistent with the observed number density. Better agreement with the observed number density of CMQGs at z 2 is obtained if merging is included in the analysis and better still if star formation quenching is assumed to shortly follow the merging event, as implied by recent models of the formation of MQGs.
Logan, Gordon D; Crump, Matthew J C
2009-10-01
Everyone knows that attention to the details disrupts skilled performance, but little empirical evidence documents this fact. We show that attention to the hands disrupts skilled typewriting. We had skilled typists type words preceded by cues that told them to type only the letters assigned to one hand or to type all of the letters. Cuing the hands disrupted performance markedly, slowing typing and increasing the error rate (Experiment 1); these deleterious effects were observed even when no keystrokes were actually inhibited (Experiment 3). However, cuing the same letters with colors was not disruptive (Experiment 2). We account for the disruption with a hierarchical control model, in which an inner loop controls the hands and an outer loop controls what is typed. Typing letters using only one hand requires the outer loop to monitor the inner loop's output; the outer loop slows inner-loop cycle time to increase the likelihood of inhibiting responses with the unwanted hand. This produces the disruption.
DOE Office of Scientific and Technical Information (OSTI.GOV)
Shao, X.; Liang, Y. C.; Chen, X. Y.
We compare the host galaxies of 902 supernovae (SNe), including SNe Ia, SNe II, and SNe Ibc, which are selected by cross-matching the Asiago Supernova Catalog with the Sloan Digital Sky Survey (SDSS) Data Release 7. We selected an additional 213 galaxies by requiring the light fraction of spectral observations to be >15%, which could represent well the global properties of the galaxies. Among these 213 galaxies, 135 appear on the Baldwin-Phillips-Terlevich diagram, which allows us to compare the hosts in terms of whether they are star-forming (SF) galaxies, active galactic nuclei (AGNs; including composites, LINERs, and Seyfert 2s) ormore » absorption-line galaxies (Absorps; i.e., their related emission lines are weak or non-existent). The diagrams related to the parameters D{sub n}(4000), Hδ{sub A}, stellar masses, star formation rates (SFRs), and specific SFRs for the SNe hosts show that almost all SNe II and most of the SNe Ibc occur in SF galaxies, which have a wide range of stellar masses and low D{sub n}(4000). The SNe Ia hosts as SF galaxies following similar trends. A significant fraction of SNe Ia occurs in AGNs and absorption-line galaxies, which are massive and have high D{sub n}(4000). The stellar population analysis from spectral synthesis fitting shows that the hosts of SNe II have a younger stellar population than hosts of SNe Ia. These results are compared with those of the 689 comparison galaxies where the SDSS fiber captures less than 15% of the total light. These comparison galaxies appear biased toward higher 12+log(O/H) (∼0.1 dex) at a given stellar mass. Therefore, we believe the aperture effect should be kept in mind when the properties of the hosts for different types of SNe are discussed.« less
The Rate of Core Collapse Supernovae to Redshift 2.5 from the CANDELS and CLASH Supernova Surveys
NASA Astrophysics Data System (ADS)
Strolger, Louis-Gregory; Dahlen, Tomas; Rodney, Steven A.; Graur, Or; Riess, Adam G.; McCully, Curtis; Ravindranath, Swara; Mobasher, Bahram; Shahady, A. Kristin
2015-11-01
The Cosmic Assembly Near-infrared Deep Extragalactic Legacy Survey and Cluster Lensing And Supernova survey with Hubble multi-cycle treasury programs with the Hubble Space Telescope (HST) have provided new opportunities to probe the rate of core-collapse supernovae (CCSNe) at high redshift, now extending to z≈ 2.5. Here we use a sample of approximately 44 CCSNe to determine volumetric rates, RCC, in six redshift bins in the range 0.1\\lt z\\lt 2.5. Together with rates from our previous HST program, and rates from the literature, we trace a more complete history of {R}{CC}(z), with {R}{CC}=0.72+/- 0.06 yr-1 Mpc-3 10-4{h}703 at z\\lt 0.08, and increasing to {3.7}-1.6+3.1 yr-1 Mpc-3 10-4{h}703 to z≈ 2.0. The statistical precision in each bin is several factors better than than the systematic error, with significant contributions from host extinction, and average peak absolute magnitudes of the assumed luminosity functions for CCSN types. Assuming negligible time delays from stellar formation to explosion, we find these composite CCSN rates to be in excellent agreement with cosmic star formation rate density (SFRs) derived largely from dust-corrected rest-frame UV emission, with a scaling factor of k=0.0091+/- 0.0017 {M}⊙ -1, and inconsistent (to \\gt 95% confidence) with SFRs from IR luminous galaxies, or with SFR models that include simple evolution in the initial mass function over time. This scaling factor is expected if the fraction of the IMF contributing to CCSN progenitors is in the 8-50 M⊙ range. It is not supportive, however, of an upper mass limit for progenitors at \\lt 20 {M}⊙ .
Yamaguchi, Motonori; Crump, Matthew J C; Logan, Gordon D
2013-06-01
Typing performance involves hierarchically structured control systems: At the higher level, an outer loop generates a word or a series of words to be typed; at the lower level, an inner loop activates the keystrokes comprising the word in parallel and executes them in the correct order. The present experiments examined contributions of the outer- and inner-loop processes to the control of speed and accuracy in typewriting. Experiments 1 and 2 involved discontinuous typing of single words, and Experiments 3 and 4 involved continuous typing of paragraphs. Across experiments, typists were able to trade speed for accuracy but were unable to type at rates faster than 100 ms/keystroke, implying limits to the flexibility of the underlying processes. The analyses of the component latencies and errors indicated that the majority of the trade-offs were due to inner-loop processing. The contribution of outer-loop processing to the trade-offs was small, but it resulted in large costs in error rate. Implications for strategic control of automatic processes are discussed. (PsycINFO Database Record (c) 2013 APA, all rights reserved).
NASA Astrophysics Data System (ADS)
Fogarty, Kevin; Postman, Marc; Larson, Rebecca; Donahue, Megan; Moustakas, John
2017-09-01
We study the nature of feedback mechanisms in the 11 CLASH brightest cluster galaxies (BCGs) that exhibit extended ultraviolet and nebular line emission features. We estimate star formation rates (SFRs), dust masses, and starburst durations using a Bayesian photometry-fitting technique that accounts for both stellar and dust emission from the UV through far-IR. By comparing these quantities to intracluster medium (ICM) cooling times and freefall times derived from X-ray observations and lensing estimates of the cluster mass distribution, we discover a tight relationship between the BCG SFR and the ICM cooling time to freefall time ratio, {t}{cool}/{t}{ff}, with an upper limit on the intrinsic scatter of 0.15 dex. Furthermore, starburst durations may correlate with ICM cooling times at a radius of 0.025 {R}500, and the two quantities converge upon reaching the gigayear regime. Our results provide a direct observational link between the thermodynamical state of the ICM and the intensity and duration of BCG star formation activity, and appear consistent with a scenario where active galactic nuclei induce condensation of thermally unstable ICM overdensities that fuel long-duration (>1 Gyr) BCG starbursts. This scenario can explain (a) how gas with a low cooling time is depleted without causing a cooling flow and (b) the scaling relationship between SFR and {t}{cool}/{t}{ff}. We also find that the scaling relation between SFR and dust mass in BCGs with SFRs < 100 {M}⊙ yr-1 is similar to that in star-forming field galaxies; BCGs with large (> 100 {M}⊙ yr-1) SFRs have dust masses comparable to extreme starbursts.
NASA Astrophysics Data System (ADS)
Shipley, Heath; Papovich, Casey
2015-08-01
We provide a new robust star-formation rate (SFR) calibration using the luminosity from polycyclic aromatic hydrogen (PAH) molecules. The PAH features emit strongly in the mid-infrared (mid-IR; 3-19μm), mitigating dust extinction, and they are very luminous, containing 5-10% of the total IR luminosity in galaxies. We derive the calibration of the PAH luminosity as a SFR indicator using a sample of 105 star-forming galaxies covering a range of total IR luminosity, LIR = L(8-1000μm) = 109 - 1012 L⊙ and redshift 0 < z < 0.6. The PAH luminosity correlates linearly with the SFR as measured by the dust-corrected Hα luminosity (using the sum of the Hα and rest-frame 24μm luminosity from Kennicutt et al. 2009), with tight scatter of ~0.15 dex, comparable to the scatter in the dust-corrected Hα SFRs and Paα SFRs. We show this relation is sensitive to galaxy metallicity, where the PAH luminosity of galaxies with Z < 0.7 Z⊙ departs from the linear SFR relationship but in a behaved manor. We derive for this a correction to galaxies below solar metallicity. As a case study for observations with JWST, we apply the PAH SFR calibration to a sample of lensed galaxies at 1 < z < 3 with Spitzer Infrared Spectrograph (IRS) data, and we demonstrate the utility of PAHs to derive SFRs as accurate as those available from any other indicator. This new SFR indicator will be useful for probing the peak of the SFR density of the universe (1 < z < 3) and for studying the coevolution of star-formation and supermassive blackhole accretion contemporaneously in a galaxy.
Spitzer observations of red galaxies: Implication for high-redshift star formation
NASA Astrophysics Data System (ADS)
Papovich, Casey
2006-03-01
My colleagues and I identified distant red galaxies (DRGs) with J - Ks > 2.3 in the southern Great Observatories Origins Deep Surveys (GOODS-S) field. These galaxies reside at z ˜ 1-3.5, (< z> ≃ 2.2) and based on their ACS (0.4-1 μm), ISAAC (1-2.2 μm), and IRAC (3-8 μm) photometry, they typically have stellar masses M ⩾ 10 11 M⊙. Interestingly, more than 50% of these objects have 24 μm flux densities ⩾50 μJy. Attributing the IR emission to star-formation implies star-formation rates (SFRs) of ≃100-1000 M⊙ yr -1. As a result, galaxies with M ⩾ 10 11 M⊙ have specific SFRs equal to or exceeding the global value at z ˜ 1.5-3. In contrast, galaxies with M ⩾ 10 11 M⊙ at z ˜ 0.3-0.75 have specific SFRs less than the global average, and more than an order of magnitude lower than that for massive DRGs at z ˜ 1.5-3. Thus, the bulk of star formation in massive galaxies is largely complete by z ˜ 1.5. The red colors and large inferred stellar masses in the DRGs suggest that much of the star formation in these galaxies occurred at redshifts z ≳ 5-6. Using model star-formation histories that match the DRG colors and stellar masses at z ˜ 2-3, and measurements of the UV luminosity density at z ≳ 5-6, we consider what constraints exist on the stellar initial mass function in the progenitors of the massive DRGs at z ˜ 2-3.
STAR FORMATION ACTIVITY IN CLASH BRIGHTEST CLUSTER GALAXIES
DOE Office of Scientific and Technical Information (OSTI.GOV)
Fogarty, Kevin; Postman, Marc; Connor, Thomas
2015-11-10
The CLASH X-ray selected sample of 20 galaxy clusters contains 10 brightest cluster galaxies (BCGs) that exhibit significant (>5σ) extinction-corrected star formation rates (SFRs). Star formation activity is inferred from photometric estimates of UV and Hα+[N ii] emission in knots and filaments detected in CLASH Hubble Space Telescope ACS and WFC3 observations. UV-derived SFRs in these BCGs span two orders of magnitude, including two with a SFR ≳ 100 M{sub ⊙} yr{sup −1}. These measurements are supplemented with [O ii], [O iii], and Hβ fluxes measured from spectra obtained with the SOAR telescope. We confirm that photoionization from ongoing starmore » formation powers the line emission nebulae in these BCGs, although in many BCGs there is also evidence of a LINER-like contribution to the line emission. Coupling these data with Chandra X-ray measurements, we infer that the star formation occurs exclusively in low-entropy cluster cores and exhibits a correlation with gas properties related to cooling. We also perform an in-depth study of the starburst history of the BCG in the cluster RXJ1532.9+3021, and create 2D maps of stellar properties on scales down to ∼350 pc. These maps reveal evidence for an ongoing burst occurring in elongated filaments, generally on ∼0.5–1.0 Gyr timescales, although some filaments are consistent with much younger (≲100 Myr) burst timescales and may be correlated with recent activity from the active galactic nucleus. The relationship between BCG SFRs and the surrounding intracluster medium gas properties provide new support for the process of feedback-regulated cooling in galaxy clusters and is consistent with recent theoretical predictions.« less
GRB host galaxies with VLT/X-Shooter: properties at 0.8 < z < 1.3
NASA Astrophysics Data System (ADS)
Piranomonte, S.; Japelj, J.; Vergani, S. D.; Savaglio, S.; Palazzi, E.; Covino, S.; Flores, H.; Goldoni, P.; Cupani, G.; Krühler, T.; Mannucci, F.; Onori, F.; Rossi, A.; D'Elia, V.; Pian, E.; D'Avanzo, P.; Gomboc, A.; Hammer, F.; Randich, S.; Fiore, F.; Stella, L.; Tagliaferri, G.
2015-10-01
Long gamma-ray bursts (LGRBs) are associated with the death of massive stars. Their host galaxies therefore represent a unique class of objects tracing star formation across the observable Universe. Indeed, recently accumulated evidence shows that GRB hosts do not differ substantially from general population of galaxies at high (z > 2) redshifts. However, it has been long recognized that the properties of z < 1.5 hosts, compared to general star-forming population, are unusual. To better understand the reasons for the supposed difference in LGRB hosts properties at z < 1.5, we obtained Very Large Telescope (VLT)/X-Shooter spectra of six hosts lying in the redshift range of 0.8 < z < 1.3. Some of these hosts have been observed before, yet we still lack well-constrained information on their characteristics such as metallicity, dust extinction and star formation rate (SFR). We search for emission lines in the VLT/X-Shooter spectra of the hosts and measure their fluxes. We perform a detailed analysis, estimating host average extinction, SFRs, metallicities and electron densities where possible. Measured quantities of our hosts are compared to a larger sample of previously observed GRB hosts at z < 2. SFRs and metallicities are measured for all the hosts analysed in this paper and metallicities are well determined for four hosts. The mass-metallicity relation, the fundamental metallicity relation and SFRs derived from our hosts occupy similar parameter space as other host galaxies investigated so far at the same redshift. We therefore conclude that GRB hosts in our sample support the found discrepancy between the properties of low-redshift GRB hosts and the general population of star-forming galaxies.
EVIDENCE FOR REDUCED SPECIFIC STAR FORMATION RATES IN THE CENTERS OF MASSIVE GALAXIES AT z = 4
DOE Office of Scientific and Technical Information (OSTI.GOV)
Jung, Intae; Finkelstein, Steven L.; Song, Mimi
2017-01-01
We perform the first spatially resolved stellar population study of galaxies in the early universe ( z = 3.5–6.5), utilizing the Hubble Space Telescope Cosmic Assembly Near-infrared Deep Extragalactic Legacy Survey imaging data set over the GOODS-S field. We select a sample of 418 bright and extended galaxies at z = 3.5–6.5 from a parent sample of ∼8000 photometric-redshift-selected galaxies from Finkelstein et al. We first examine galaxies at 3.5 ≲ z ≲ 4.0 using additional deep K -band survey data from the HAWK-I UDS and GOODS Survey which covers the 4000 Å break at these redshifts. We measure the stellar mass,more » star formation rate, and dust extinction for galaxy inner and outer regions via spatially resolved spectral energy distribution fitting based on a Markov Chain Monte Carlo algorithm. By comparing specific star formation rates (sSFRs) between inner and outer parts of the galaxies we find that the majority of galaxies with high central mass densities show evidence for a preferentially lower sSFR in their centers than in their outer regions, indicative of reduced sSFRs in their central regions. We also study galaxies at z ∼ 5 and 6 (here limited to high spatial resolution in the rest-frame ultraviolet only), finding that they show sSFRs which are generally independent of radial distance from the center of the galaxies. This indicates that stars are formed uniformly at all radii in massive galaxies at z ∼ 5–6, contrary to massive galaxies at z ≲ 4.« less
NASA Astrophysics Data System (ADS)
Cowley, M. J.; Spitler, L. R.; Quadri, R. F.; Goulding, A. D.; Papovich, C.; Tran, K. V. H.; Labbé, I.; Alcorn, L.; Allen, R. J.; Forrest, B.; Glazebrook, K.; Kacprzak, G. G.; Morrison, G.; Nanayakkara, T.; Straatman, C. M. S.; Tomczak, A. R.
2018-01-01
We investigate the relationship between the black hole accretion rate (BHAR) and star formation rate (SFR) for Milky Way (MW) and Andromeda (M31)-mass progenitors from z = 0.2 to 2.5. We source galaxies from the Ks-band-selected ZFOURGE survey, which includes multiwavelength data spanning 0.3-160 μm. We use decomposition software to split the observed spectral energy distributions (SEDs) of our galaxies into their active galactic nuclei (AGNs) and star-forming components, which allows us to estimate BHARs and SFRs from the infrared (IR). We perform tests to check the robustness of these estimates, including a comparison with BHARs and SFRs derived from X-ray stacking and far-IR analysis, respectively. We find that, as the progenitors evolve their relative black hole-galaxy growth (i.e. their BHAR/SFR ratio) increases from low to high redshift. The MW-mass progenitors exhibit a log-log slope of 0.64 ± 0.11, while the M31-mass progenitors are 0.39 ± 0.08. This result contrasts with previous studies that find an almost flat slope when adopting X-ray-/AGN-selected or mass-limited samples and is likely due to their use of a broad mixture of galaxies with different evolutionary histories. Our use of progenitor-matched samples highlights the potential importance of carefully selecting progenitors when searching for evolutionary relationships between BHAR/SFRs. Additionally, our finding that BHAR/SFR ratios do not track the rate at which progenitors quench casts doubts over the idea that the suppression of star formation is predominantly driven by luminous AGN feedback (i.e. high BHARs).
NASA Astrophysics Data System (ADS)
Lo Faro, B.; Silva, L.; Franceschini, A.; Miller, N.; Efstathiou, A.
2015-03-01
We complement our previous analysis of a sample of z ˜ 1-2 luminous and ultraluminous infrared galaxies [(U)LIRGs], by adding deep Very Large Array radio observations at 1.4 GHz to a large data set from the far-UV to the submillimetre, including Spitzer and Herschel data. Given the relatively small number of (U)LIRGs in our sample with high signal-to-noise (S/N) radio data, and to extend our study to a different family of galaxies, we also include six well-sampled near-infrared (near-IR)-selected BzK galaxies at z ˜ 1.5. From our analysis based on the radtran spectral synthesis code GRASIL, we find that, while the IR luminosity may be a biased tracer of the star formation rate (SFR) depending on the age of stars dominating the dust heating, the inclusion of the radio flux offers significantly tighter constraints on SFR. Our predicted SFRs are in good agreement with the estimates based on rest-frame radio luminosity and the Bell calibration. The extensive spectrophotometric coverage of our sample allows us to set important constraints on the star formation (SF) history of individual objects. For essentially all galaxies, we find evidence for a rather continuous SFR and a peak epoch of SF preceding that of the observation by a few Gyr. This seems to correspond to a formation redshift of z ˜ 5-6. We finally show that our physical analysis may affect the interpretation of the SFR-M⋆ diagram, by possibly shifting, with respect to previous works, the position of the most dust obscured objects to higher M⋆ and lower SFRs.
The Average Star Formation Histories of Galaxies in Dark Matter Halos from z = 0-8
NASA Astrophysics Data System (ADS)
Behroozi, Peter S.; Wechsler, Risa H.; Conroy, Charlie
2013-06-01
We present a robust method to constrain average galaxy star formation rates (SFRs), star formation histories (SFHs), and the intracluster light (ICL) as a function of halo mass. Our results are consistent with observed galaxy stellar mass functions, specific star formation rates (SSFRs), and cosmic star formation rates (CSFRs) from z = 0 to z = 8. We consider the effects of a wide range of uncertainties on our results, including those affecting stellar masses, SFRs, and the halo mass function at the heart of our analysis. As they are relevant to our method, we also present new calibrations of the dark matter halo mass function, halo mass accretion histories, and halo-subhalo merger rates out to z = 8. We also provide new compilations of CSFRs and SSFRs; more recent measurements are now consistent with the buildup of the cosmic stellar mass density at all redshifts. Implications of our work include: halos near 1012 M ⊙ are the most efficient at forming stars at all redshifts, the baryon conversion efficiency of massive halos drops markedly after z ~ 2.5 (consistent with theories of cold-mode accretion), the ICL for massive galaxies is expected to be significant out to at least z ~ 1-1.5, and dwarf galaxies at low redshifts have higher stellar mass to halo mass ratios than previous expectations and form later than in most theoretical models. Finally, we provide new fitting formulae for SFHs that are more accurate than the standard declining tau model. Our approach places a wide variety of observations relating to the SFH of galaxies into a self-consistent framework based on the modern understanding of structure formation in ΛCDM. Constraints on the stellar mass-halo mass relationship and SFRs are available for download online.
NASA Astrophysics Data System (ADS)
Kennicutt, Robert C., Jr.
Overview: Induced Star Formation and Interactions Introduction Historical Background: First Hints Systematic Studies: Starbursts Interactions and Nuclear activity IRAS and Ultralumious starburst Galaxies The 1990's: HST, Supercomputers, and the Distant Universe Key Questions and Issues Organization of Lectures Star Formation Properties of Normal Galaxies Observational Techniques Results: Star Formation in Normal Galaxies Interpretation: Star Formation Histories Global Star Formation in interacting Galaxies A Gallery of Interactions and Mergers Star Formation Statistics: Guilt By Association Tests SFRs in Interacting vs Noninteracting Galaxies Kinematic Properties and Regulation of SFRs Induced Nuclear Activity and Star Formation Background: Nuclear Spectra and Classification Nuclear Star Formation and Starbursts Nuclear Star Formation and Interactions Induced AGN Activity: Statistics of Seyfert Galaxies Environments of Quasars Kinematic Clues to the Triggering of AGNs Infrared Luminous Galaxies and Starbursts Background: IR Luminous Galaxies and IRAS Infrared Luminosity Function and Spectra Infrared Structure and Morphology Interstellar Gas X-Ray Emission and Superwinds Optical, UV, and Near-Infrared Spectra Radio Continuum Emission Evidence for Interactions and Mergers The Power Source: Starbursts or Dusty AGNs? Spectral Diagnostics of Starbursts Evolutionary Synthesis Models Applications: Integrated Colors of Interacting Galaxies Applications: Hα Emission, Colors, and SFRs Applications: Spectral Modelling of Evolved Starbursts Infrared Starbursts and the IMF in starbursts Triggering and Regulation of Star Formation: The Problem Introduction: Star Formation as a Nonlinear Process The schmidt Law in Normal Galaxies Star Formation Regimes in Interacting Galaxies Summary Triggering and Regulation of Starbusts: Theoretical Ideas Gravitational Star Formation Thresholds Cloud Collision Models Radial Transport of Gas: Clues from Barred Galaxies Simulations of Starbursts in Merging Galaxies The Cosmological Role of Interactions and Starbursts Interactions in Hierarchical Cosmology Interaction-Induced Star Formation Today Interaction-Induced Star Formation in the Past Disk kinematics and the Merger Rate Global Effects of Starbursts and Superwinds Concluding Remarks References
Evidence for Reduced Species Star Formation Rates in the Centers of Massive Galaxies at zeta = 4
NASA Technical Reports Server (NTRS)
Jung, Intae; Finkelstein, Steven L.; Song, Mimi; Dickinson, Mark; Dekel, Avishai; Ferguson, Henry C.; Fontana, Adriano; Koekemoer, Anton M.; Lu, Yu; Mobasher, Bahram;
2017-01-01
We perform the first spatially-resolved stellar population study of galaxies in the early universe z equals 3.5 -6.5, utilizing the Hubble Space Telescope Cosmic Assembly Near-infrared Deep Extragalactic Legacy Survey (CANDELS) imaging dataset over the GOODS-S field. We select a sample of 418 bright and extended galaxies at z less than or approximately equal to 3.5-6.5 from a parent sample of approximately 8000 photometric-redshift selected galaxies from Finkelstein et al. We first examine galaxies at 3.5 less than or equal to z less than or approximately equal to 4.0 using additional deep K-band survey data from the HAWK-I UDS and GOODS Survey (HUGS) which covers the 4000 Angstrom break at these redshifts. We measure the stellar mass, star formation rate, and dust extinction for galaxy inner and outer regions via spatially-resolved spectral energy distribution fitting based on a Markov Chain Monte Carlo algorithm. By comparing specific star formation rates (sSFRs) between inner and outer parts of the galaxies we find that the majority of galaxies with the high central mass densities show evidence for a preferentially lower sSFR in their centers than in their outer regions, indicative of reduced sSFRs in their central regions. We also study galaxies at z approximately equal to 5 and 6 (here limited to high spatial resolution in the rest-frame ultraviolet only), finding that they show sSFRs which are generally independent of radial distance from the center of the galaxies. This indicates that stars are formed uniformly at all radii in massive galaxies at z approximately equal to 5-6, contrary tomassive galaxies at z. less than approximately equal to 4.
Dust Attenuation and H(alpha) Star Formation Rates of Z Approx. 0.5 Galaxies
NASA Technical Reports Server (NTRS)
Ly, Chun; Malkan, Matthew A.; Kashikawa, Nobunari; Ota, Kazuaki; Shimasaku, Kazuhiro; Iye, Masanori; Currie, Thayne
2012-01-01
Using deep narrow-band and broad-band imaging, we identify 401 z approximately 0.40 and 249 z approximately 0.49 H-alpha line-emitting galaxies in the Subaru Deep Field. Compared to other H-alpha surveys at similar redshifts, our samples are unique since they probe lower H-alpha luminosities, are augmented with multi-wavelength (rest-frame 1000AA--1.5 microns) coverage, and a large fraction (20%) of our samples has already been spectroscopically confirmed. Our spectra allow us to measure the Balmer decrement for nearly 60 galaxies with H-beta detected above 5-sigma. The Balmer decrements indicate an average extinction of A(H-alpha)=0.7(uparrow){+1.4}_{-0.7} mag. We find that the Balmer decrement systematically increases with higher H-alpha luminosities and with larger stellar masses, in agreement with previous studies with sparser samples. We find that the SFRs estimated from modeling the spectral energy distribution (SED) is reliable---we derived an "intrinsic" H-alpha luminosity which is then reddened assuming the color excess from SED modeling. The SED-predicted H-alpha luminosity agrees with H-alpha narrow-band measurements over 3 dex (rms of 0.25 dex). We then use the SED SFRs to test different statistically-based dust corrections for H-alpha and find that adopting one magnitude of extinction is inappropriate: galaxies with lower luminosities are less reddened. We find that the luminosity-dependent dust correction of Hopkins et al. yields consistent results over 3 dex (rms of 0.3 dex). Our comparisons are only possible by assuming that stellar reddening is roughly half of nebular reddening. The strong correspondence argue that with SED modeling, we can derive reliable intrinsic SFRs even in the absence of H-alpha measurements at z approximately 0.5.
A Multi-Wavelength Survey of Intermediate-Mass Star-Forming Regions
NASA Astrophysics Data System (ADS)
Lundquist, Michael J.; Kobulnicky, Henry A.; Kerton, Charles R.
2015-01-01
Current research into Galactic star formation has focused on either massive star-forming regions or nearby low-mass regions. We present results from a survey of Galactic intermediate-mass star-forming regions (IM SFRs). These regions were selected from IRAS colors that specify cool dust and large PAH contribution, suggesting that they produce stars up to but not exceeding about 8 solar masses. Using WISE data we have classified 984 candidate IM SFRs as star-like objects, galaxies, filamentary structures, or blobs/shells based on their mid-infrared morphologies. Focusing on the blobs/shells, we combined follow-up observations of deep near-infrared (NIR) imaging with optical and NIR spectroscopy to study the stellar content, confirming the intermediate-mass nature of these regions. We also gathered CO data from OSO and APEX to study the molecular content and dynamics of these regions. We compare these results to those of high-mass star formation in order to better understand their role in the star-formation paradigm.
Astronomy in Denver: Spatial distributions of dust properties via far-IR broadband map with HerPlaNS
NASA Astrophysics Data System (ADS)
Asano, Kentaro; Ueta, Toshiya; Ladjal, Djazia; Exter, Katrina; Otsuka, Masaaki; HerPlaNS Consortium
2018-06-01
We present the results of our analyses on dust properties in all of Galactic planetary nebulae based on 5-band broadband images in the far-IR taken with the Herschel Space Observatory.By fitting surface brightness distributions of dust thermal emission at 70, 160, 250, 350 and 500 microns with a single-temperature modified black body function, we derive spatially resolved maps of the dust emissivity power-law index (beta) and dust temperature (Td), as well as the column density.We find that circumstellar dust grains in PNe occupy a specific region in the beta-Td space, which is distinct from that occupied by dust grains in the Interstellar Matter (ISM) and star forming regions (SFRs). Unlike those in the ISM and SFRs, dust grains in PNe exhibit little variation in beta while a large spread in Td, suggesting rather homogeneous dust properties.This work is part of the Herschel Planetary Nebula Survey Plus (HerPlaNS+) supported by the NASA Astrophysics Data Analysis Program.
Star Formation Rates of dS galaxies
NASA Astrophysics Data System (ADS)
Hidalgo-Gámez, A. M.; Vega-Acevedo, I.; Magaña-Serrano, M. A.
2014-10-01
The Star Formation Rate of a sample of nine dwarf spiral galaxies and ten late-type Sm is determined from the Hα luminosity. The main interest was to check if these two kind of late-type galaxies have similar SFR or not. The images were acquired at the 1.5m telescope of the SPM-OAN and they were reduced with the software MIDAS. The values of the SFR are very similar for both type of galaxies and also similar to other Sm galaxies. The main result is that the dwarf spiral galaxies are more efficient when forming stars than the Sm galaxies because the SFR per are are lower for the latter with the same gas density than for dwarf spirals. However, the SFRs are larger in the Sm galaxies. In addition, the SFR per area were compared with global properties of the galaxies. There is only a relationship between the SFR and the surface brightness as well as with the absolute blue magnitude, but no relationship with the optical radius. A larger sample is needed in order to obtain a more conclusive answer.
Schulte, Marianne; Panwalkar, Vineet; Freischem, Stefan; Willbold, Dieter; Dingley, Andrew J
2018-04-19
Sequence alignment of the four WW domains from human Nedd4-1 (neuronal precursor cell expressed developmentally down-regulated gene 4-1) reveals that the highest sequence diversity exists in loop I. Three residues in this type I β-turn interact with the PPxY motif of the human epithelial Na + channel (hENaC) subunits, indicating that peptide affinity is defined by the loop I sequence. The third WW domain (WW3*) has the highest ligand affinity and unlike the other three hNedd4-1 WW domains or other WW domains studied contains the highly statistically preferred proline at the ( i + 1) position found in β-turns. In this report, molecular dynamics simulations and experimental data were combined to characterize loop I stability and dynamics. Exchange of the proline to the equivalent residue in WW4 (Thr) results in the presence of a predominantly open seven residue Ω loop rather than the type I β-turn conformation for the wild-type apo-WW3*. In the presence of the ligand, the structure of the mutated loop I is locked into a type I β-turn. Thus, proline in loop I ensures a stable peptide binding-competent β-turn conformation, indicating that amino acid sequence modulates local flexibility to tune binding preferences and stability of dynamic interaction motifs.
Effect of orientation of prismatic dislocation loops on interaction with free surfaces in BCC iron
NASA Astrophysics Data System (ADS)
Fikar, Jan; Gröger, Roman; Schäublin, Robin
2017-12-01
The prismatic loops appear in metals as a result of high-energy irradiation. Understanding their formation and interaction is important for quantification of irradiation-induced deterioration of mechanical properties. Characterization of dislocation loops in thin foils is commonly made using transmission electron microscopy (TEM), but the results are inevitably influenced by the proximity of free surfaces. The prismatic loops are attracted to free surfaces by image forces. Depending on the type, shape, size, orientation and depth of the loop in the foil, they can escape to the free surface creating denuded loop-free zones and thus invalidating TEM observations. In our previous studies we described a simple general method to determine the critical depth and the critical stress to move prismatic dislocation loops. The critical depths can be further used to correct measurements of the loop density by TEM. Here, we use this procedure to compare 〈100〉 loops and 1/2 〈111〉 loops in body-centered cubic (BCC) iron. The influences of the interatomic potential and the loop orientation are studied in detail. The difference between interstitial and vacancy type loop is also investigated.
Smith, Emily M.; Lajoie, Bryan R.; Jain, Gaurav; Dekker, Job
2016-01-01
Three-dimensional genome structure plays an important role in gene regulation. Globally, chromosomes are organized into active and inactive compartments while, at the gene level, looping interactions connect promoters to regulatory elements. Topologically associating domains (TADs), typically several hundred kilobases in size, form an intermediate level of organization. Major questions include how TADs are formed and how they are related to looping interactions between genes and regulatory elements. Here we performed a focused 5C analysis of a 2.8 Mb chromosome 7 region surrounding CFTR in a panel of cell types. We find that the same TAD boundaries are present in all cell types, indicating that TADs represent a universal chromosome architecture. Furthermore, we find that these TAD boundaries are present irrespective of the expression and looping of genes located between them. In contrast, looping interactions between promoters and regulatory elements are cell-type specific and occur mostly within TADs. This is exemplified by the CFTR promoter that in different cell types interacts with distinct sets of distal cell-type-specific regulatory elements that are all located within the same TAD. Finally, we find that long-range associations between loci located in different TADs are also detected, but these display much lower interaction frequencies than looping interactions within TADs. Interestingly, interactions between TADs are also highly cell-type-specific and often involve loci clustered around TAD boundaries. These data point to key roles of invariant TAD boundaries in constraining as well as mediating cell-type-specific long-range interactions and gene regulation. PMID:26748519
DOE Office of Scientific and Technical Information (OSTI.GOV)
Light, Samuel H.; Minasov, George; Shuvalova, Ludmilla
2012-04-18
Dehydroquinate dehydratase (DHQD) catalyzes the third step in the biosynthetic shikimate pathway. We present three crystal structures of the Salmonella enterica type I DHQD that address the functionality of a surface loop that is observed to close over the active site following substrate binding. Two wild-type structures with differing loop conformations and kinetic and structural studies of a mutant provide evidence of both direct and indirect mechanisms of involvement of the loop in substrate binding. In addition to allowing amino acid side chains to establish a direct interaction with the substrate, closure of the loop necessitates a conformational change ofmore » a key active site arginine, which in turn positions the substrate productively. The absence of DHQD in humans and its essentiality in many pathogenic bacteria make the enzyme a target for the development of nontoxic antimicrobials. The structures and ligand binding insights presented here may inform the design of novel type I DHQD inhibiting molecules.« less
Carter, Joseph J.; Wipf, Greg C.; Madeleine, Margaret M.; Schwartz, Stephen M.; Koutsky, Laura A.; Galloway, Denise A.
2006-01-01
The variable surface loops on human papillomavirus (HPV) virions required for type-specific neutralization by human sera remain poorly defined. To determine which loops are required for neutralization, a series of hybrid virus-like particles (VLPs) were used to adsorb neutralizing activity from HPV type 16 (HPV16)-reactive human sera before being tested in an HPV16 pseudovirion neutralization assay. The hybrid VLPs used were composed of L1 sequences of either HPV16 or HPV31, on which one or two regions were replaced with homologous sequences from the other type. The regions chosen for substitution were the five known loops that form surface epitopes recognized by monoclonal antibodies and two additional variable regions between residues 400 and 450. Pretreatment of human sera, previously found to react to HPV16 VLPs in enzyme-linked immunosorbent assays, with wild-type HPV16 VLPs and hybrid VLPs that retained the neutralizing epitopes reduced or eliminated the ability of sera to inhibit pseudovirus infection in vitro. Surprisingly, substitution of a single loop often ablated the ability of VLPs to adsorb neutralizing antibodies from human sera. However, for all sera tested, multiple surface loops were found to be important for neutralizing activity. Three regions, defined by loops DE, FG, and HI, were most frequently identified as being essential for binding by neutralizing antibodies. These observations are consistent with the existence of multiple neutralizing epitopes on the HPV virion surface. PMID:16641259
Carter, Joseph J; Wipf, Greg C; Madeleine, Margaret M; Schwartz, Stephen M; Koutsky, Laura A; Galloway, Denise A
2006-05-01
The variable surface loops on human papillomavirus (HPV) virions required for type-specific neutralization by human sera remain poorly defined. To determine which loops are required for neutralization, a series of hybrid virus-like particles (VLPs) were used to adsorb neutralizing activity from HPV type 16 (HPV16)-reactive human sera before being tested in an HPV16 pseudovirion neutralization assay. The hybrid VLPs used were composed of L1 sequences of either HPV16 or HPV31, on which one or two regions were replaced with homologous sequences from the other type. The regions chosen for substitution were the five known loops that form surface epitopes recognized by monoclonal antibodies and two additional variable regions between residues 400 and 450. Pretreatment of human sera, previously found to react to HPV16 VLPs in enzyme-linked immunosorbent assays, with wild-type HPV16 VLPs and hybrid VLPs that retained the neutralizing epitopes reduced or eliminated the ability of sera to inhibit pseudovirus infection in vitro. Surprisingly, substitution of a single loop often ablated the ability of VLPs to adsorb neutralizing antibodies from human sera. However, for all sera tested, multiple surface loops were found to be important for neutralizing activity. Three regions, defined by loops DE, FG, and HI, were most frequently identified as being essential for binding by neutralizing antibodies. These observations are consistent with the existence of multiple neutralizing epitopes on the HPV virion surface.
ERIC Educational Resources Information Center
Yamaguchi, Motonori; Crump, Matthew J. C.; Logan, Gordon D.
2013-01-01
Typing performance involves hierarchically structured control systems: At the higher level, an outer loop generates a word or a series of words to be typed; at the lower level, an inner loop activates the keystrokes comprising the word in parallel and executes them in the correct order. The present experiments examined contributions of the outer-…
DOE Office of Scientific and Technical Information (OSTI.GOV)
Elmegreen, Bruce G.; Kaufman, Michele; Bournaud, Frédéric
CO observations of the interacting galaxies IC 2163 and NGC 2207 are combined with HI, H α , and 24 μ m observations to study the star formation rate (SFR) surface density as a function of the gas surface density. More than half of the high-SFR regions are HI dominated. When compared to other galaxies, these HI-dominated regions have excess SFRs relative to their molecular gas surface densities but normal SFRs relative to their total gas surface densities. The HI-dominated regions are mostly located in the outer part of NGC 2207 where the HI velocity dispersion is high, 40–50 kmmore » s{sup −1}. We suggest that the star-forming clouds in these regions have envelopes at lower densities than normal, making them predominantly atomic, and cores at higher densities than normal because of the high turbulent Mach numbers. This is consistent with theoretical predictions of a flattening in the density probability distribution function for compressive, high Mach number turbulence.« less
The Role Of Rejuvenation In Shaping The High-Mass End Of The Main Sequence
NASA Astrophysics Data System (ADS)
Mancini, Chiara
2017-06-01
We investigate the nature of star forming galaxies with reduced specific SFRs and high stellar masses, those that seemingly cause the so-called bending of the main sequence. The fact that such objects host large bulges recently lead some to suggest that the internal formation of the bulges, via compaction or disk instabilities, was the late event that induced sSFRs of massive galaxies to drop in a slow downfall and thus the main sequence to bend. We have studied in detail a sample of 16 galaxies at 0.5
Edge-on dislocation loop in anisotropic hcp zirconium thin foil
NASA Astrophysics Data System (ADS)
Wu, Wenwang; Xia, Re; Qian, Guian; Xu, Shucai; Zhang, Jinhuan
2015-10-01
Edge-on dislocation loops with 〈 a 〉 -type and 〈 c 〉 -type of Burgers vectors can be formed on prismatic or basel habit planes of hexagonal close-packed (hcp) zirconium alloys during in-situ ion irradiation and neutron irradiation experiments. In this work, an anisotropic image stress method was employed to analyze the free surface effects of dislocation loops within hcp Zr thin foils. Calculation results demonstrate that image stress has a remarkable effect on the distortion fields of dislocation loops within infinite medium, and the image energy becomes remarkable when dislocation loops are situated close to the free surfaces. Moreover, image forces of the 1 / 2 〈 0001 〉 (0001) dislocation loop within (0001) thin foil is much stronger than that of the 1 / 3 〈 11 2 bar 0 〉 (11 2 bar 0) dislocation loop within (11 2 bar 0) thin foil of identical geometrical configurations. Finally, image stress effect on the physical behaviors of loops during in-situ ion irradiation experiments is discussed.
Dismantling of Loop-Type Channel Equipment of MR Reactor in NRC 'Kurchatov Institute' - 13040
DOE Office of Scientific and Technical Information (OSTI.GOV)
Volkov, Victor; Danilovich, Alexey; Zverkov, Yuri
2013-07-01
In 2009 the project of decommissioning of MR and RTF reactors was developed and approved by the Expert Authority of the Russian Federation (Gosexpertiza). The main objective of the decommissioning works identified in this project: - complete dismantling of reactor equipment and systems; - decontamination of reactor premises and site in accordance with the established sanitary and hygienic standards. At the preparatory stage (2008-2010) of the project the following works were executed: loop-type channels' dismantling in the storage pool; experimental fuel assemblies' removal from spent fuel repositories in the central hall; spent fuel assembly removal from the liquid-metal-cooled loop-type channelmore » of the reactor core and its placement into the SNF repository; and reconstruction of engineering support systems to the extent necessary for reactor decommissioning. The project assumes three main phases of dismantling and decontamination: - dismantling of equipment/pipelines of cooling circuits and loop-type channels, and auxiliary reactor equipment (2011-2012); - dismantling of equipment in underground reactor premises and of both MR and RTF in-vessel devices (2013-2014); - decontamination of reactor premises; rehabilitation of the reactor site; final radiation survey of reactor premises, loop-type channels and site; and issuance of the regulatory authorities' de-registration statement (2015). In 2011 the decommissioning license for the two reactors was received and direct MR decommissioning activities started. MR primary pipelines and loop-type facilities situated in the underground reactor hall were dismantled. Works were also launched to dismantle the loop-type channels' equipment in underground reactor premises; reactor buildings were reconstructed to allow removal of dismantled equipment; and the MR/RTF decommissioning sequence was identified. In autumn 2011 - spring 2012 results of dismantling activities performed are: - equipment from underground rooms (No. 66, 66A, 66B, 72, 64, 63) - as well as from water and gas loop corridors - was dismantled, with the total radwaste weight of 53 tons and the total removed activity of 5,0 x 10{sup 10} Bq; - loop-type channel equipment from underground reactor hall premises was dismantled; - 93 loop-type channels were characterized, chopped and removed, with radwaste of 2.6 x 10{sup 13} Bq ({sup 60}Co) and 1.5 x 10{sup 13} Bq ({sup 137}Cs) total activity removed from the reactor pool, fragmented and packaged. Some of this waste was placed into the high-level waste (HLW) repository of the Center. Dismantling works were executed with application of remotely operated mechanisms, which promoted decrease of radiation impact on the personnel. The average individual dose for the personnel was 1.9 mSv/year in 2011, and the collective dose is estimated as 0.0605 man x Sv/year. (authors)« less
Smith, Emily M; Lajoie, Bryan R; Jain, Gaurav; Dekker, Job
2016-01-07
Three-dimensional genome structure plays an important role in gene regulation. Globally, chromosomes are organized into active and inactive compartments while, at the gene level, looping interactions connect promoters to regulatory elements. Topologically associating domains (TADs), typically several hundred kilobases in size, form an intermediate level of organization. Major questions include how TADs are formed and how they are related to looping interactions between genes and regulatory elements. Here we performed a focused 5C analysis of a 2.8 Mb chromosome 7 region surrounding CFTR in a panel of cell types. We find that the same TAD boundaries are present in all cell types, indicating that TADs represent a universal chromosome architecture. Furthermore, we find that these TAD boundaries are present irrespective of the expression and looping of genes located between them. In contrast, looping interactions between promoters and regulatory elements are cell-type specific and occur mostly within TADs. This is exemplified by the CFTR promoter that in different cell types interacts with distinct sets of distal cell-type-specific regulatory elements that are all located within the same TAD. Finally, we find that long-range associations between loci located in different TADs are also detected, but these display much lower interaction frequencies than looping interactions within TADs. Interestingly, interactions between TADs are also highly cell-type-specific and often involve loci clustered around TAD boundaries. These data point to key roles of invariant TAD boundaries in constraining as well as mediating cell-type-specific long-range interactions and gene regulation. Copyright © 2016 The American Society of Human Genetics. Published by Elsevier Inc. All rights reserved.
Star Formation Activity in CLASH Brightest Cluster Galaxies
NASA Astrophysics Data System (ADS)
Fogarty, Kevin; Postman, Marc; Connor, Thomas; Donahue, Megan; Moustakas, John
2015-11-01
The CLASH X-ray selected sample of 20 galaxy clusters contains 10 brightest cluster galaxies (BCGs) that exhibit significant (>5σ) extinction-corrected star formation rates (SFRs). Star formation activity is inferred from photometric estimates of UV and Hα+[N ii] emission in knots and filaments detected in CLASH Hubble Space Telescope ACS and WFC3 observations. UV-derived SFRs in these BCGs span two orders of magnitude, including two with a SFR ≳ 100 M⊙ yr-1. These measurements are supplemented with [O ii], [O iii], and Hβ fluxes measured from spectra obtained with the SOAR telescope. We confirm that photoionization from ongoing star formation powers the line emission nebulae in these BCGs, although in many BCGs there is also evidence of a LINER-like contribution to the line emission. Coupling these data with Chandra X-ray measurements, we infer that the star formation occurs exclusively in low-entropy cluster cores and exhibits a correlation with gas properties related to cooling. We also perform an in-depth study of the starburst history of the BCG in the cluster RXJ1532.9+3021, and create 2D maps of stellar properties on scales down to ˜350 pc. These maps reveal evidence for an ongoing burst occurring in elongated filaments, generally on ˜0.5-1.0 Gyr timescales, although some filaments are consistent with much younger (≲100 Myr) burst timescales and may be correlated with recent activity from the active galactic nucleus. The relationship between BCG SFRs and the surrounding intracluster medium gas properties provide new support for the process of feedback-regulated cooling in galaxy clusters and is consistent with recent theoretical predictions. Based on observations obtained at the Southern Astrophysical Research (SOAR) telescope, which is a joint project of the Ministério da Ciência, Tecnologia, e Inovação (MCTI) da República Federativa do Brasil, the U.S. National Optical Astronomy Observatory (NOAO), the University of North Carolina at Chapel Hill (UNC), and Michigan State University (MSU).
Unmixing Magnetic Hysteresis Loops
NASA Astrophysics Data System (ADS)
Heslop, D.; Roberts, A. P.
2012-04-01
Magnetic hysteresis loops provide important information in rock and environmental magnetic studies. Natural samples often contain an assemblage of magnetic particles composed of components with different origins. Each component potentially carries important environmental information. Hysteresis loops, however, provide information concerning the bulk magnetic assemblage, which makes it difficult to isolate the specific contributions from different sources. For complex mineral assemblages an unmixing strategy with which to separate hysteresis loops into their component parts is therefore essential. Previous methods to unmix hysteresis data have aimed at separating individual loops into their constituent parts using libraries of type-curves thought to correspond to specific mineral types. We demonstrate an alternative approach, which rather than decomposing a single loop into monomineralic contributions, examines a collection of loops to determine their constituent source materials. These source materials may themselves be mineral mixtures, but they provide a genetically meaningful decomposition of a magnetic assemblage in terms of the processes that controlled its formation. We show how an empirically derived hysteresis mixing space can be created, without resorting to type-curves, based on the co-variation within a collection of measured loops. Physically realistic end-members, which respect the expected behaviour and symmetries of hysteresis loops, can then be extracted from the mixing space. These end-members allow the measured loops to be described as a combination of invariant parts that are assumed to represent the different sources in the mixing model. Particular attention is paid to model selection and estimating the complexity of the mixing model, specifically, how many end-members should be included. We demonstrate application of this approach using lake sediments from Butte Valley, northern California. Our method successfully separates the hysteresis loops into sources with a variety of terrigenous and authigenic origins.
Full characterization of dislocations in ion-irradiated polycrystalline UO2
NASA Astrophysics Data System (ADS)
Onofri, C.; Legros, M.; Léchelle, J.; Palancher, H.; Baumier, C.; Bachelet, C.; Sabathier, C.
2017-10-01
In order to fully characterize the dislocation loops and lines features (Burgers vectors, habit/slip planes, interstitial or vacancy type) induced by irradiation in UO2, polycrystalline thin foils were irradiated with 4 MeV Au or 390 keV Xe ions at different temperatures (25, 600 and 800 °C) and fluences (0.5 and 1 × 1015 ions/cm2), and further analyzed using TEM. In all the cases, this study, performed on a large number of dislocation loops (diameter ranging from 10 to 80 nm) and for the first time on several dislocation lines, reveals unfaulted prismatic dislocation loops with an interstitial nature and Burgers vectors only along the <110>-type directions. Almost 60% of the studied loops are purely prismatic type and lie on {110} habit planes perpendicular to the Burgers vector directions. The others lie on the {110} or {111} planes, which are neither perpendicular to the Burgers vectors, nor contain them. About 87% of the dislocation lines, formed by loop overlapping as fluence increases, are edge or mixed type in the <100>{100} slip systems, as those induced under mechanical load.
A loop-based neural architecture for structured behavior encoding and decoding.
Gisiger, Thomas; Boukadoum, Mounir
2018-02-01
We present a new type of artificial neural network that generalizes on anatomical and dynamical aspects of the mammal brain. Its main novelty lies in its topological structure which is built as an array of interacting elementary motifs shaped like loops. These loops come in various types and can implement functions such as gating, inhibitory or executive control, or encoding of task elements to name a few. Each loop features two sets of neurons and a control region, linked together by non-recurrent projections. The two neural sets do the bulk of the loop's computations while the control unit specifies the timing and the conditions under which the computations implemented by the loop are to be performed. By functionally linking many such loops together, a neural network is obtained that may perform complex cognitive computations. To demonstrate the potential offered by such a system, we present two neural network simulations. The first illustrates the structure and dynamics of a single loop implementing a simple gating mechanism. The second simulation shows how connecting four loops in series can produce neural activity patterns that are sufficient to pass a simplified delayed-response task. We also show that this network reproduces electrophysiological measurements gathered in various regions of the brain of monkeys performing similar tasks. We also demonstrate connections between this type of neural network and recurrent or long short-term memory network models, and suggest ways to generalize them for future artificial intelligence research. Copyright © 2017 Elsevier Ltd. All rights reserved.
Liechty, Shawn T; Barnhart, Douglas C; Huber, Jordan T; Zobell, Sarah; Rollins, Michael D
2016-01-01
Loop colostomies may contaminate the genitourinary (GU) tract in patients with anorectal malformations (ARM) owing to incomplete diversion of stool. Stoma complications are also thought to be higher with a loop versus divided colostomy. We sought to compare the morbidity, including urinary tract infections (UTI), in these two types of colostomies in children with ARM. A review was performed at a children's hospital (1989-2014). Children with ARM who had a colostomy performed were identified. Demographic data and outcome variables were collected. Analyses included Student's t-test, Fischer's exact and logistic regression as appropriate. 171 patients were identified (loop=78; divided=93). Thirty percent of patients with a divided colostomy and 24% with a loop experienced a stoma complication (p=0.5). A subgroup analysis of children with a rectourinary fistula (54 divided, 26 loop) was performed to assess for effect of colostomy type on UTI. After controlling for other UTI risk factors (major GU anomalies, vesicostomy, and prophylactic antibiotics), loop ostomies were not associated with risk of UTI (OR 0.83, 95% CI 0.27-2.63). No patient with a loop colostomy developed megarectum. Children with ARM who undergo a loop colostomy are not at a detectable increased risk of experiencing a UTI compared to a divided stoma. The rate of stoma complication is high regardless of the type of stoma created. Copyright © 2016 Elsevier Inc. All rights reserved.
NASA Technical Reports Server (NTRS)
Simon, M. K.
1977-01-01
A modification of a Costas loop is described, and the false lock behavior of this system is studied. The modified Costas loop hard limits the output of the in-phase channel, replaces the analog multiplier with a chopper-type device, and is equipped with single-pole arm filters in the loop. The false lock behavior associated with the use of Manchester coded data is investigated; the results can be applied to the assessment of the false lock margin on the Ku-band uplink to the Space Shuttle Orbiter through the TURSS.
NASA Astrophysics Data System (ADS)
Guidez, Joel; Saturnin, Anne
2017-11-01
During the operation of a nuclear reactor, the external individual doses received by the personnel are measured and recorded, in conformity with the regulations in force. The sum of these measurements enables an evaluation of the annual collective dose expressed in man·Sv/year. This information is a useful tool when comparing the different design types and reactors. This article discusses the evolution of the collective dose for several types of reactors, mainly based on publications from the NEA and the IAEA. The spread of good practices (optimization of working conditions and of the organization, sharing of lessons learned, etc.) and ongoing improvements in reactor design have meant that over time, the doses of various origins received by the personnel have decreased. In the case of sodium-cooled fast reactors (SFRs), the compilation and summarizing of various documentary resources has enabled them to be situated and compared to other types of reactors of the second and third generations (respectively pressurized water reactors in operation and EPR under construction). From these results, it can be seen that the doses received during the operation of SFR are significantly lower for this type of reactor.
2009-03-01
8217 Clear old problem data Do While Trim(Sheets("Campaign").Range("AF" & CStr (LOOP_COUNTER))) <> "" LOOP_COUNTER = LOOP_COUNTER + 1 Loop Do While...Trim(Sheets("Campaign").Range("A" & CStr (LOOP_COUNTER))) <> "" ’ Loop through all problem instances Sheets("Campaign").Range("R1:AF1").Rows...total number of locations M = Sheets("Campaign").Range("F" & CStr (LOOP_COUNTER)) ’ Record total number of sensor types N
NASA Astrophysics Data System (ADS)
Shimizu, T. Taro; Mushotzky, Richard F.; Meléndez, Marcio; Koss, Michael J.; Barger, Amy J.; Cowie, Lennox L.
2017-04-01
We combine the Herschel Space Observatory PACS (Photoconductor Array Camera and Spectrometer) and SPIRE (Spectral and Photometric Imaging Receiver) photometry with archival WISE (Wide-field Infrared Survey Explorer) photometry to construct the spectral energy distributions (SEDs) for over 300 local (z < 0.05), ultrahard X-ray (14-195 keV) selected active galactic nuclei (AGN) from the Swift Burst Alert Telescope (BAT) 58-month catalogue. Using a simple analytical model that combines an exponentially cutoff power law with a single temperature modified blackbody, we decompose the SEDs into a host galaxy and AGN component. We calculate dust masses, dust temperatures, and star formation rates (SFRs) for our entire sample and compare them to a stellar mass-matched sample of local non-AGN galaxies. We find AGN host galaxies have systematically higher dust masses, dust temperatures, and SFRs due to the higher prevalence of late-type galaxies to host an AGN, in agreement with previous studies of the Swift/BAT AGN. We provide a scaling to convert X-ray luminosities into 8-1000 μm AGN luminosities, as well as determine the best mid-to-far IR colours for identifying AGN-dominated galaxies in the IR regime. We find that for nearly 30 per cent of our sample, the 70 μm emission contains a significant contribution from the AGN (>0.5), especially at higher luminosities (L14 - 195 keV > 1042.5 erg s-1). Finally, we measure the local SFR-AGN luminosity relationship, finding a slope of 0.18, large scatter (0.37 dex), and no evidence for an upturn at high AGN luminosity. We conclude with a discussion on the implications of our results within the context of galaxy evolution with and without AGN feedback.
Accumulation of dislocation loops in the α phase of Zr Excel alloy under heavy ion irradiation
NASA Astrophysics Data System (ADS)
Yu, Hongbing; Yao, Zhongwen; Idrees, Yasir; Zhang, He K.; Kirk, Mark A.; Daymond, Mark R.
2017-08-01
In-situ heavy ion irradiations were performed on the high Sn content Zr alloy 'Excel', measuring type dislocation loop accumulation up to irradiation damage doses of 10 dpa at a range of temperatures. The high content of Sn, which diffuses slowly, and the thin foil geometry of the sample provide a unique opportunity to study an extreme case where displacement cascades dominate the loop formation and evolution. The dynamic observation of dislocation loop evolution under irradiation at 200 °C reveals that type dislocation loops can form at very low dose (0.0025 dpa). The size of the dislocation loops increases slightly with irradiation damage dose. The mechanism controlling loop growth in this study is different from that in neutron irradiation; in this study, larger dislocation loops can condense directly from the interaction of displacement cascades and the high concentration of point defects in the matrix. The size of the dislocation loop is dependent on the point defect concentration in the matrix. A negative correlation between the irradiation temperature and the dislocation loop size was observed. A comparison between cascade dominated loop evolution (this study), diffusion dominated loop evolution (electron irradiation) and neutron irradiation suggests that heavy ion irradiation alone may not be enough to accurately reproduce neutron irradiation induced loop structures. An alternative method is proposed in this paper. The effects of Sn on the displacement cascades, defect yield, and the diffusion behavior of point defects are established.
FY16 Status Report on NEAMS Neutronics Activities
DOE Office of Scientific and Technical Information (OSTI.GOV)
Lee, C. H.; Shemon, E. R.; Smith, M. A.
2016-09-30
The goal of the NEAMS neutronics effort is to develop a neutronics toolkit for use on sodium-cooled fast reactors (SFRs) which can be extended to other reactor types. The neutronics toolkit includes the high-fidelity deterministic neutron transport code PROTEUS and many supporting tools such as a cross section generation code MC 2-3, a cross section library generation code, alternative cross section generation tools, mesh generation and conversion utilities, and an automated regression test tool. The FY16 effort for NEAMS neutronics focused on supporting the release of the SHARP toolkit and existing and new users, continuing to develop PROTEUS functions necessarymore » for performance improvement as well as the SHARP release, verifying PROTEUS against available existing benchmark problems, and developing new benchmark problems as needed. The FY16 research effort was focused on further updates of PROTEUS-SN and PROTEUS-MOCEX and cross section generation capabilities as needed.« less
Coordinated gripping of substrate by subunits of a AAA+ proteolytic machine
Iosefson, Ohad; Nager, Andrew R.; Baker, Tania A.; Sauer, Robert T.
2014-01-01
Hexameric AAA+ unfoldases of ATP-dependent proteases and protein-remodeling machines use conserved loops that line the axial pore to apply force to substrates during the mechanical processes of protein unfolding and translocation. Whether loops from multiple subunits act independently or coordinately in these processes is a critical aspect of mechanism but is currently unknown for any AAA+ machine. By studying covalently linked hexamers of the E. coli ClpX unfoldase bearing different numbers and configurations of wild-type and mutant pore loops, we show that loops function synergistically, with the number of wild-type loops required for efficient degradation depending upon the stability of the protein substrate. Our results support a mechanism in which a power stroke initiated in one subunit of the ClpX hexamer results in the concurrent movement of all six pore loops, which coordinately grip and apply force to the substrate. PMID:25599533
1985-06-01
just pass the message WAIT NOW AFTER Rlock + timeo t -- if time is out write.screen( TIME IS OUT") MAIN PROGRAM* CHAN linki , link2, link3, link4...PAR D.I.Loop.Interface (link4, linkl,) D.I.Loop.Interface ( linki , link2, 2) D.I.Loop.Interface (link2, link3, 3) JD.I Loop.Interface (link3, link4, 4
Ogawa, Masahiro; Koyama, Yasuji
2012-01-01
Loop-out-type recombination is a type of intrachromosomal recombination followed by the excision of a chromosomal region. The detailed mechanism underlying this recombination and the genes involved in loop-out recombination remain unknown. In the present study, we investigated the functions of ku70, ligD, rad52, rad54, and rdh54 in the construction of large chromosomal deletions via loop-out recombination and the effect of the position of the targeted chromosomal region on the efficiency of loop-out recombination in Aspergillus oryzae. The efficiency of generation of large chromosomal deletions in the near-telomeric region of chromosome 3, including the aflatoxin gene cluster, was compared with that in the near-centromeric region of chromosome 8, including the tannase gene. In the Δku70 and Δku70-rdh54 strains, only precise loop-out recombination occurred in the near-telomeric region. In contrast, in the ΔligD, Δku70-rad52, and Δku70-rad54 strains, unintended chromosomal deletions by illegitimate loop-out recombination occurred in the near-telomeric region. In addition, large chromosomal deletions via loop-out recombination were efficiently achieved in the near-telomeric region, but barely achieved in the near-centromeric region, in the Δku70 strain. Induction of DNA double-strand breaks by I-SceI endonuclease facilitated large chromosomal deletions in the near-centromeric region. These results indicate that ligD, rad52, and rad54 play a role in the generation of large chromosomal deletions via precise loop-out-type recombination in the near-telomeric region and that loop-out recombination between distant sites is restricted in the near-centromeric region by chromosomal structure. PMID:22286092
Son, Jaebum; Lee, Min-Kyoung; Jeong, Myung Yung; Kim, Chang-Seok
2010-01-01
In the sensing applications of optical fiber grating, it is necessary to reduce the transmission-type polarization dependence to isolate the sensing parameter. It is experimentally shown that the polarization-dependent spectrum of acousto-optic long-period fiber grating sensors can be suppressed in the transmission port of a π-shifted Sagnac loop interferometer. General expressions for the transmittance and reflectance are derived for transmission-type, reflection-type, and partially reflecting/transmitting-type polarization-dependent optical devices. The compensation of polarization dependence through the counter propagation in the Sagnac loop interferometer is quantitatively measured for a commercial in-line polarizer and an acousto-optic long-period fiber grating sensor. PMID:22399884
DOE Office of Scientific and Technical Information (OSTI.GOV)
Fisher, David B.; Drory, Niv; Fabricius, Maximilian H.
2009-05-20
We study star formation rates (SFRs) and stellar masses in bulges of nearby disk galaxies. For this we construct a new SFR indicator that linearly combines data from the Spitzer Space Telescope and the Galaxy Evolution Explorer. All bulges are found to be forming stars irrespective of bulge type (pseudobulge or classical bulge). At present-day SFR the median pseudobulge could have grown the present-day stellar mass in 8 Gyr. Classical bulges have the lowest specific SFR implying a growth times that are longer than a Hubble time, and thus the present-day SFR does not likely play a major role inmore » the evolution of classical bulges. In almost all galaxies in our sample the specific SFR (SFR per unit stellar mass) of the bulge is higher than that of the outer disk. This suggests that almost all galaxies are increasing their B/T through internal star formation. The SFR in pseudobulges correlates with their structure. More massive pseudobulges have higher SFR density, this is consistent with that stellar mass being formed by moderate, extended star formation. Bulges in late-type galaxies have similar SFRs as pseudobulges in intermediate-type galaxies, and are similar in radial size. However, they are deficient in mass; thus, they have much shorter growth times, {approx}2 Gyr. We identify a class of bulges that have nuclear morphology similar to pseudobulges, significantly lower specific SFR than pseudobulges, and are closer to classical bulges in structural parameter correlations. These are possibly composite objects, evolved pseudobulges or classical bulges experiencing transient, enhanced nuclear star formation. Our results are consistent with a scenario in which bulge growth via internal star formation is a natural, and near ubiquitous phenomenon in disk galaxies. Those galaxies with large classical bulges are not affected by the in situ bulge growth, likely because the majority of their stellar mass comes from some other phenomenon. Yet, those galaxies without a classical bulge, over long periods of extended star formation are able to growth a pseudobulge. Though cold accretion is not ruled out, for pseudobulge galaxies an addition of stellar mass from mergers or accretion is not required to explain the bulge mass. In this sense, galaxies with pseudobulges may very well be bulgeless (or 'quasi-bulgeless') galaxies, and galaxies with classical bulges are galaxies in which both internal evolution and hierarchical merging are responsible for the bulge mass by fractions that vary from galaxy to galaxy.« less
Inhibition of Cav3.2 T-type Calcium Channels by Its Intracellular I-II Loop*
Monteil, Arnaud; Chausson, Patrick; Boutourlinsky, Katia; Mezghrani, Alexandre; Huc-Brandt, Sylvaine; Blesneac, Iulia; Bidaud, Isabelle; Lemmers, Céline; Leresche, Nathalie; Lambert, Régis C.; Lory, Philippe
2015-01-01
Voltage-dependent calcium channels (Cav) of the T-type family (Cav3.1, Cav3.2, and Cav3.3) are activated by low threshold membrane depolarization and contribute greatly to neuronal network excitability. Enhanced T-type channel activity, especially Cav3.2, contributes to disease states, including absence epilepsy. Interestingly, the intracellular loop connecting domains I and II (I-II loop) of Cav3.2 channels is implicated in the control of both surface expression and channel gating, indicating that this I-II loop plays an important regulatory role in T-type current. Here we describe that co-expression of this I-II loop or its proximal region (Δ1-Cav3.2; Ser423–Pro542) together with recombinant full-length Cav3.2 channel inhibited T-type current without affecting channel expression and membrane incorporation. Similar T-type current inhibition was obtained in NG 108-15 neuroblastoma cells that constitutively express Cav3.2 channels. Of interest, Δ1-Cav3.2 inhibited both Cav3.2 and Cav3.1 but not Cav3.3 currents. Efficacy of Δ1-Cav3.2 to inhibit native T-type channels was assessed in thalamic neurons using viral transduction. We describe that T-type current was significantly inhibited in the ventrobasal neurons that express Cav3.1, whereas in nucleus reticularis thalami neurons that express Cav3.2 and Cav3.3 channels, only the fast inactivating T-type current (Cav3.2 component) was significantly inhibited. Altogether, these data describe a new strategy to differentially inhibit Cav3 isoforms of the T-type calcium channels. PMID:25931121
Closed-loop for type 1 diabetes - an introduction and appraisal for the generalist.
Bally, Lia; Thabit, Hood; Hovorka, Roman
2017-01-23
Rapid progress over the past decade has been made with the development of the 'Artificial Pancreas', also known as the closed-loop system, which emulates the feedback glucose-responsive functionality of the pancreatic beta cell. The recent FDA approval of the first hybrid closed-loop system makes the Artificial Pancreas a realistic therapeutic option for people with type 1 diabetes. In anticipation of its advent into clinical care, we provide a primer and appraisal of this novel therapeutic approach in type 1 diabetes for healthcare professionals and non-specialists in the field. Randomised clinical studies in outpatient and home settings have shown improved glycaemic outcomes, reduced risk of hypoglycaemia and positive user attitudes. User input and interaction with existing closed-loop systems, however, are still required. Therefore, management of user expectations, as well as training and support by healthcare providers are key to ensure optimal uptake, satisfaction and acceptance of the technology. An overview of closed-loop technology and its clinical implications are discussed, complemented by our extensive hands-on experience with closed-loop system use during free daily living. The introduction of the artificial pancreas into clinical practice represents a milestone towards the goal of improving the care of people with type 1 diabetes. There remains a need to understand the impact of user interaction with the technology, and its implication on current diabetes management and care.
Saussine, Christian; Andonian, Sero; Pacík, Dalibor; Popiolek, Marcin; Celia, Antonio; Buchholz, Noor; Sountoulides, Petros; Petrut, Bogdan; de la Rosette, Jean J M C H
2018-04-01
Retropulsion, defined as unintended migration of a stone under the influence of the fragmentation device in ureteroscopy (URS) procedures, occurs in 2% to 60% of the cases. Antiretropulsive devices (ARDs) have been studied in experimental and small clinical studies. The current study aims at describing the worldwide usage of ARD and the outcomes related to their usage. The Clinical Research Office of the Endourological Society URS Global Study enrolled 11,885 patients who underwent URS and stone fragmentation for ureteral and/or renal stones. Of the 11,885 treated patients, 9877 were treated for ureteral stones, and data were available on stone migration and ARD use. Of all procedures, 14.5% were performed with the use of an ARD. Less stone migration (-2.0%; p = 0.050), higher stone-free rates (SFRs) (2.8%; p < 0.001), and shorter length of stay (-4.7%; p = 0.001) were observed in the antiretropulsive group. When an ARD is used during URS, less migration, higher SFRs, and shorter length of hospital stay are observed. This effect is independent from baseline differences and corrected for other treatment characteristics.
Benchmark studies of thermal jet mixing in SFRs using a two-jet model
DOE Office of Scientific and Technical Information (OSTI.GOV)
Omotowa, O. A.; Skifton, R.; Tokuhiro, A.
To guide the modeling, simulations and design of Sodium Fast Reactors (SFRs), we explore and compare the predictive capabilities of two numerical solvers COMSOL and OpenFOAM in the thermal jet mixing of two buoyant jets typical of the outlet flow from a SFR tube bundle. This process will help optimize on-going experimental efforts at obtaining high resolution data for V and V of CFD codes as anticipated in next generation nuclear systems. Using the k-{epsilon} turbulence models of both codes as reference, their ability to simulate the turbulence behavior in similar environments was first validated for single jet experimental datamore » reported in literature. This study investigates the thermal mixing of two parallel jets having a temperature difference (hot-to-cold) {Delta}T{sub hc}= 5 deg. C, 10 deg. C and velocity ratios U{sub c}/U{sub h} = 0.5, 1. Results of the computed turbulent quantities due to convective mixing and the variations in flow field along the axial position are presented. In addition, this study also evaluates the effect of spacing ratio between jets in predicting the flow field and jet behavior in near and far fields. (authors)« less
DOE Office of Scientific and Technical Information (OSTI.GOV)
Randriamanakoto, Z.; Väisänen, P.; Escala, A.
2013-10-01
We have established a relation between the brightest super star cluster (SSC) magnitude in a galaxy and the host star formation rate (SFR) for the first time in the near-infrared (NIR). The data come from a statistical sample of ∼40 luminous IR galaxies (LIRGs) and starbursts utilizing K-band adaptive optics imaging. While expanding the observed relation to longer wavelengths, less affected by extinction effects, it also pushes to higher SFRs. The relation we find, M{sub K} ∼ –2.6log SFR, is similar to that derived previously in the optical and at lower SFRs. It does not, however, fit the optical relationmore » with a single optical to NIR color conversion, suggesting systematic extinction and/or age effects. While the relation is broadly consistent with a size-of-sample explanation, we argue physical reasons for the relation are likely as well. In particular, the scatter in the relation is smaller than expected from pure random sampling strongly suggesting physical constraints. We also derive a quantifiable relation tying together cluster-internal effects and host SFR properties to possibly explain the observed brightest SSC magnitude versus SFR dependency.« less
Complexities of high temperature metal fatigue: Some steps toward understanding
NASA Technical Reports Server (NTRS)
Manson, S. S.; Halford, G. R.
1983-01-01
After pointing out many of the complexities that attend high temperature metal fatigue beyond those already studied in the sub-creep range, a description of the micromechanisms of deformation and fracture is presented for several classes of materials that were studied over the past dozen years. Strainrange Partitioning (SRP) is used as a framework for interpreting the results. Several generic types of behavior were observed with regard both to deformation and fracture and each is discussed in the context of the micromechanisms involved. Treatment of cumulative fatigue damage and the possibility of ""healing'' of damage in successive loading loops, has led to a new interpretation of the Interaction Damage Rule of SRP. Using the concept of ""equivalent micromechanistic damage'' -- that the same damage on a microscopic scale is induced if the same hysteresis loops are generated, element for element -- it turns out the Interaction Damage Rule essentially compounds a number of variants of hysteresis loops, all of which have the same damage according to SRP concepts, into a set of loops each containing only one of the generic SRP strainranges. Thus the damage associcated with complex loops comprising several types of strainrange is analyzed by considering a combination of loops each containing only one type of strainrange. This concept is expanded to show how several independent loops can combine to ""heal'' creep damage in a complex loading history.
Role of the DELSEED Loop in Torque Transmission of F1-ATPase
Tanigawara, Mizue; Tabata, Kazuhito V.; Ito, Yuko; Ito, Jotaro; Watanabe, Rikiya; Ueno, Hiroshi; Ikeguchi, Mitsunori; Noji, Hiroyuki
2012-01-01
F1-ATPase is an ATP-driven rotary motor that generates torque at the interface between the catalytic β-subunits and the rotor γ-subunit. The β-subunit inwardly rotates the C-terminal domain upon nucleotide binding/dissociation; hence, the region of the C-terminal domain that is in direct contact with γ—termed the DELSEED loop—is thought to play a critical role in torque transmission. We substituted all the DELSEED loop residues with alanine to diminish specific DELSEED loop-γ interactions and with glycine to disrupt the loop structure. All the mutants rotated unidirectionally with kinetic parameters comparable to those of the wild-type F1, suggesting that the specific interactions between DELSEED loop and γ is not involved in cooperative interplays between the catalytic β-subunits. Glycine substitution mutants generated half the torque of the wild-type F1, whereas the alanine mutant generated comparable torque. Fluctuation analyses of the glycine/alanine mutants revealed that the γ-subunit was less tightly held in the α3β3-stator ring of the glycine mutant than in the wild-type F1 and the alanine mutant. Molecular dynamics simulation showed that the DELSEED loop was disordered by the glycine substitution, whereas it formed an α-helix in the alanine mutant. Our results emphasize the importance of loop rigidity for efficient torque transmissions. PMID:23009846
Carbonneau, Leah; Bhattacharya, Dipankar; Sheridan, David C.; Coronado, Roberto
2005-01-01
Understanding which cytosolic domains of the dihydropyridine receptor participate in excitation-contraction (EC) coupling is critical to validate current structural models. Here we quantified the contribution to skeletal-type EC coupling of the α1S (CaV1.1) II-III loop when alone or in combination with the rest of the cytosolic domains of α1S. Chimeras consisting of α1C (CaV1.2) with α1S substitutions at each of the interrepeat loops (I-II, II-III, and III-IV loops) and N- and C-terminal domains were evaluated in dysgenic (α1S-null) myotubes for phenotypic expression of skeletal-type EC coupling. Myotubes were voltage-clamped, and Ca2+ transients were measured by confocal line-scan imaging of fluo-4 fluorescence. In agreement with previous results, the α1C/α1S II-III loop chimera, but none of the other single-loop chimeras, recovered a sigmoidal fluorescence-voltage curve indicative of skeletal-type EC coupling. To quantify Ca2+ transients in the absence of inward Ca2+ current, but without changing the external solution, a mutation, E736K, was introduced into the P-loop of repeat II of α1C. The Ca2+ transients expressed by the α1C(E736K)/α1S II-III loop chimera were ∼70% smaller than those expressed by the Ca2+-conducting α1C/α1S II-III variant. The low skeletal-type EC coupling expressed by the α1C/α1S II-III loop chimera was confirmed in the Ca2+-conducting α1C/α1S II-III loop variant using Cd2+ (10−4 M) as the Ca2+ current blocker. In contrast to the behavior of the II-III loop chimera, Ca2+ transients expressed by an α1C/α1S chimera carrying all tested skeletal α1S domains (all α1S interrepeat loops, N- and C-terminus) were similar in shape and amplitude to wild-type α1S, and did not change in the presence of the E736K mutation or in the presence of 10−4 M Cd2+. Controls indicated that similar dihydropyridine receptor charge movements were expressed by the non-Ca2+ permeant α1S(E1014K) variant, the α1C(E736K)/α1S II-III loop chimera, and the α1C(E736K)/α1S chimera carrying all tested α1S domains. The data indicate that the functional recovery produced by the α1S II-III loop is incomplete and that multiple cytosolic domains of α1S are necessary for a quantitative recovery of the EC-coupling phenotype of skeletal myotubes. Thus, despite the importance of the II-III loop there may be other critical determinants in α1S that influence the efficiency of EC coupling. PMID:15849247
NASA Astrophysics Data System (ADS)
Zaitsev, V. V.; Stepanov, A. V.
2017-10-01
A mechanism of electron acceleration and storage of energetic particles in solar and stellar coronal magnetic loops, based on oscillations of the electric current, is considered. The magnetic loop is presented as an electric circuit with the electric current generated by convective motions in the photosphere. Eigenoscillations of the electric current in a loop induce an electric field directed along the loop axis. It is shown that the sudden reductions that occur in the course of type IV continuum and pulsating type III observed in various frequency bands (25 - 180 MHz, 110 - 600 MHz, 0.7 - 3.0 GHz) in solar flares provide evidence for acceleration and storage of the energetic electrons in coronal magnetic loops. We estimate the energization rate and the energy of accelerated electrons and present examples of the storage of energetic electrons in loops in the course of flares on the Sun or on ultracool stars. We also discuss the efficiency of the suggested mechanism as compared with the electron acceleration during the five-minute photospheric oscillations and with the acceleration driven by the magnetic Rayleigh-Taylor instability.
Rigid Body Rate Inference from Attitude Variation
NASA Technical Reports Server (NTRS)
Bar-Itzhack, I. Y.; Harman, Richard R.; Thienel, Julie K.
2006-01-01
In this paper we research the extraction of the angular rate vector from attitude information without differentiation, in particular from quaternion measurements. We show that instead of using a Kalman filter of some kind, it is possible to obtain good rate estimates, suitable for spacecraft attitude control loop damping, using simple feedback loops, thereby eliminating the need for recurrent covariance computation performed when a Kalman filter is used. This considerably simplifies the computations required for rate estimation in gyro-less spacecraft. Some interesting qualities of the Kalman filter gain are explored, proven and utilized. We examine two kinds of feedback loops, one with varying gain that is proportional to the well known Q matrix, which is computed using the measured quaternion, and the other type of feedback loop is one with constant coefficients. The latter type includes two kinds; namely, a proportional feedback loop, and a proportional-integral feedback loop. The various schemes are examined through simulations and their performance is compared. It is shown that all schemes are adequate for extracting the angular velocity at an accuracy suitable for control loop damping.
On the Extraction of Angular Velocity from Attitude Measurements
NASA Technical Reports Server (NTRS)
Bar-Itzhack, I. Y.; Harman, Richard R.; Thienel, Julie K.
2006-01-01
In this paper we research the extraction of the angular rate vector from attitude information without differentiation, in particular from quaternion measurements. We show that instead of using a Kalman filter of some kind, it is possible to obtain good rate estimates, suitable for spacecraft attitude control loop damping, using simple feedback loops, thereby eliminating the need for recurrent covariance computation performed when a Kalman filter is used. This considerably simplifies the computations required for rate estimation in gyro-less spacecraft. Some interesting qualities of the Kalman filter gain are explored, proven and utilized. We examine two kinds of feedback loops, one with varying gain that is proportional to the well known Q matrix, which is computed using the measured quaternion, and the other type of feedback loop is one with constant coefficients. The latter type includes two kinds; namely, a proportional feedback loop, and a proportional-integral feedback loop. The various schemes are examined through simulations and their performance is compared. It is shown that all schemes are adequate for extracting the angular velocity at an accuracy suitable for control loop damping.
Cascade debris overlap mechanism of 〈100〉 dislocation loop formation in Fe and FeCr
NASA Astrophysics Data System (ADS)
Granberg, F.; Byggmästar, J.; Sand, A. E.; Nordlund, K.
2017-09-01
Two types of dislocation loops are observed in irradiated α-Fe, the 1/2〈111〉 loop and the 〈100〉 loop. Atomistic simulations consistently predict that only the energetically more favourable 1/2〈111〉 loops are formed directly in cascades, leaving the formation mechanism of 〈100〉 loops an unsolved question. We show how 〈100〉 loops can be formed when cascades overlap with random pre-existing primary radiation damage in Fe and FeCr. This indicates that there are no specific constraints involved in the formation of 〈100〉 loops, and can explain their common occurrence.
Hyperstaticity and loops in frictional granular packings
NASA Astrophysics Data System (ADS)
Tordesillas, Antoinette; Lam, Edward; Metzger, Philip T.
2009-06-01
The hyperstatic nature of granular packings of perfectly rigid disks is analyzed algebraically and through numerical simulation. The elementary loops of grains emerge as a fundamental element in addressing hyperstaticity. Loops consisting of an odd number of grains behave differently than those with an even number. For odd loops, the latent stresses are exterior and are characterized by the sum of frictional forces around each loop. For even loops, the latent stresses are interior and are characterized by the alternating sum of frictional forces around each loop. The statistics of these two types of loop sums are found to be Gibbsian with a "temperature" that is linear with the friction coefficient μ when μ<1.
Loop Diuretics in the Treatment of Hypertension.
Malha, Line; Mann, Samuel J
2016-04-01
Loop diuretics are not recommended in current hypertension guidelines largely due to the lack of outcome data. Nevertheless, they have been shown to lower blood pressure and to offer potential advantages over thiazide-type diuretics. Torsemide offers advantages of longer duration of action and once daily dosing (vs. furosemide and bumetanide) and more reliable bioavailability (vs. furosemide). Studies show that the previously employed high doses of thiazide-type diuretics lower BP more than furosemide. Loop diuretics appear to have a preferable side effect profile (less hyponatremia, hypokalemia, and possibly less glucose intolerance). Studies comparing efficacy and side effect profiles of loop diuretics with the lower, currently widely prescribed, thiazide doses are needed. Research is needed to fill gaps in knowledge and common misconceptions about loop diuretic use in hypertension and to determine their rightful place in the antihypertensive arsenal.
[Characteristics of body constitution and their relations to success in learning].
Vikhruk, T I; Vikhruk, A Ia; Churganov, O A; Kolotov, V Ia
2004-01-01
Somatotype, finger dermatoglyphic pattern type, emotional stability level and foreign languages learning successfulness have been analyzed in 297 male cadets (aged 17-20 years) of the Military Institute of Physical Training. The cadets studied most frequently belonged to macrosomal and mesosomal somatotypes. In the study of finger patterns, loops were found to be most common (61.5% of all the patterns), while ringlets (33.4%) and arc patterns (5.1%) were less frequent. The amount of ulnar loops increased, while that of ringlets became less in the direction from micro- to macrosomal type. Almost half (46.9%) of the cadets appeared to be ambiverts, 30.8% were intraverts and the rest were extraverts. Loop patterns on all the fingers to a greater extent were found in cadets with high level of neuroticism; the cadets having lower neuroticism level were characterized by a combinations of loops with arcs on the left hand and arcs with ringlets on the right one. The cadets differing in foreign language learning successfulness level were different in their dermatoglyphic patterns and, especially in the prevalence of pattern combinations. So, among the excellent pupils the loop-arc combinations were 2.7 times more common and combinations of all three types of patterns (arcs, loops, ringlets) were 1.4 times more common.
Mahajan, Sai Pooja; Velez-Vega, Camilo; Escobedo, Fernando A
2013-01-10
Nanobodies are single-domain antibodies found in camelids. These are the smallest naturally occurring binding domains and derive functionality via three hypervariable loops (H1-H3) that form the binding surface. They are excellent candidates for antibody engineering because of their favorable characteristics like small size, high solubility, and stability. To rationally engineer antibodies with affinity for a specific target, the hypervariable loops can be tailored to obtain the desired binding surface. As a first step toward such a goal, we consider the design of loops with a desired conformation. In this study, we focus on the H1 loop of the anti-hCG llama nanobody that exhibits a noncanonical conformation. We aim to "tilt" the stability of the H1 loop structure from a noncanonical conformation to a (humanized) type 1 canonical conformation by studying the effect of selected mutations to the amino acid sequence of the H1, H2, and proximal residues. We use all-atomistic, explicit-solvent, biased molecular dynamic simulations to simulate the wild-type and mutant loops in a prefolded framework. We thus find mutants with increasing propensity to form a stable type 1 canonical conformation of the H1 loop. Free energy landscapes reveal the existence of conformational isomers of the canonical conformation that may play a role in binding different antigenic surfaces. We also elucidate the approximate mechanism and kinetics of transitions between such conformational isomers by using a Markovian model. We find that a particular three-point mutant has the strongest thermodynamic propensity to form the H1 type 1 canonical structure but also to exhibit transitions between conformational isomers, while a different, more rigid three-point mutant has the strongest propensity to be kinetically trapped in such a canonical structure.
Outcome of loop versus divided colostomy in the management of anorectal malformations.
Almosallam, Osama Ibrahim; Aseeri, Ali; Shanafey, Saud Al
2016-01-01
Colostomy is a common part of the management of high anorectal malformation (ARM) in the pediatric population. To evaluate whether the type of colostomy (loop vs divided) has an impact on outcome in patients with ARM. A retrospective study. King Faisal Specialist Hospital and Research Center, a tertiary care center. All patients who were managed with colostomy for ARM and had definitive repair during the period of January 2000 to December 2014. Outcomes relative to the type of the colostomy were compared. Morbidities associated with each type of colostomy. There were 104 patients managed for ARM with colostomy as staged procedures, 63 males and 41 females. Patients had a colostomy at a median age of 6 days and were closed at a median of 11 months. Definitive repair was at a median age of 17 months. Type of fistula was 8 perineal, 21 rectovestibular, 35 rectourethral, 11 rectovesical and there were 16 without fistula and 13 cloaca anomalies. There were 55 loop and 49 divided colostomies. There were 91 descending/sigmoid and 13 transverse colostomies. Operative time for loop colostomy closure was shorter than with divided colo6stomy (76 minutes vs 94 minutes, P=.002). Three patients among the divided group had reversed orientation of the colostomy that had affected bowel preparations negatively prior to its repair. There was no differences in complications of creation and closure of loop and divided colostomies except in occurrence of skin excoriation. There was more skin excoriation with divided colostomy compared to loop colostomy (17 vs 10, P=.04). Loop colostomy has a shorter closure operative time and relatively fewer complications compared to the divided colostomy. Our data suggests that loop colostomy may be more favorable than divided colostomy for ARM patients. Retrospective nature of the study and some colostomies performed at other hospitals.
Kyle, Leah M.; John, Theodore R.; Schätzl, Hermann M.; Lewis, Randolph V.
2013-01-01
Prion diseases are fatal neurodegenerative disorders characterized by misfolding of the cellular prion protein (PrPc) into the disease-associated isoform (PrPSc) that has increased β-sheet content and partial resistance to proteolytic digestion. Prion diseases from different mammalian species have varying propensities for transmission upon exposure of an uninfected host to the infectious agent. Chronic Wasting Disease (CWD) is a highly transmissible prion disease that affects free ranging and farmed populations of cervids including deer, elk and moose, as well as other mammals in experimental settings. The molecular mechanisms allowing CWD to maintain comparatively high transmission rates have not been determined. Previous work has identified a unique structural feature in cervid PrP, a rigid loop between β-sheet 2 and α-helix 2 on the surface of the protein. This study was designed to test the hypothesis that the rigid loop has a direct influence on the misfolding process. The rigid loop was introduced into murine PrP as the result of two amino acid substitutions: S170N and N174T. Wild-type and rigid loop murine PrP were expressed in E. coli and purified. Misfolding propensity was compared for the two proteins using biochemical techniques and cell free misfolding and conversion systems. Murine PrP with a rigid loop misfolded in cell free systems with greater propensity than wild type murine PrP. In a lipid-based conversion assay, rigid loop PrP converted to a PK resistant, aggregated isoform at lower concentrations than wild-type PrP. Using both proteins as substrates in real time quaking-induced conversion, rigid loop PrP adopted a misfolded isoform more readily than wild type PrP. Taken together, these findings may help explain the high transmission rates observed for CWD within cervids. PMID:23825561
Te homogeneous precipitation in Ge dislocation loop vicinity
DOE Office of Scientific and Technical Information (OSTI.GOV)
Perrin Toinin, J.; Portavoce, A., E-mail: alain.portavoce@im2np.fr; Texier, M.
2016-06-06
High resolution microscopies were used to study the interactions of Te atoms with Ge dislocation loops, after a standard n-type doping process in Ge. Te atoms neither segregate nor precipitate on dislocation loops, but form Te-Ge clusters at the same depth as dislocation loops, in contradiction with usual dopant behavior and thermodynamic expectations. Atomistic kinetic Monte Carlo simulations show that Te atoms are repulsed from dislocation loops due to elastic interactions, promoting homogeneous Te-Ge nucleation between dislocation loops. This phenomenon is enhanced by coulombic interactions between activated Te{sup 2+} or Te{sup 1+} ions.
THE MOLECULAR GAS DENSITY IN GALAXY CENTERS AND HOW IT CONNECTS TO BULGES
DOE Office of Scientific and Technical Information (OSTI.GOV)
Fisher, David B.; Bolatto, Alberto; Drory, Niv
2013-02-20
In this paper we present gas density, star formation rate (SFR), stellar masses, and bulge-disk decompositions for a sample of 60 galaxies. Our sample is the combined sample of the BIMA SONG, CARMA STING, and PdBI NUGA surveys. We study the effect of using CO-to-H{sub 2} conversion factors that depend on the CO surface brightness, and also that of correcting SFRs for diffuse emission from old stellar populations. We estimate that SFRs in bulges are typically lower by 20% when correcting for diffuse emission. Using the surface brightness dependent conversion factor, we find that over half of the galaxies inmore » our sample have {Sigma}{sub mol} > 100 M {sub Sun} pc{sup -2}. Though our sample is not complete in any sense, our results are enough to rule out the assumption that bulges are uniformly gas-poor systems. We find a trend between gas density of bulges and bulge Sersic index; bulges with lower Sersic index have higher gas density. Those bulges with low Sersic index (pseudobulges) have gas fractions that are similar to that of disks. Conversely, the typical molecular gas fraction in classical bulges is more similar to that of an elliptical galaxy. We also find that there is a strong correlation between bulges with the highest gas surface density and the galaxy being barred. However, we also find that classical bulges with low gas surface density can be barred as well. Our results suggest that understanding the connection between the central surface density of gas in disk galaxies and the presence of bars should also take into account the total gas content of the galaxy. Finally, we show that when using the corrected SFRs and gas densities, the correlation between SFR surface density and gas surface density of bulges is similar to that of disks. This implies that at the scale of the bulges the timescale for converting gas into stars is comparable to those results found in disks.« less
Multi-Wavelength Analysis of Active Galactic Nuclei and Host Galaxies Physical Properties
NASA Astrophysics Data System (ADS)
Azadi, Mojegan
In this dissertation we study the properties of active galactic nuclei (AGN), which are powered by the accretion activity of supermassive black holes residing at the centers of galaxies. While observations propose that growth of AGN and galaxies are globally tied, we investigate whether this connection exists in individual galaxies. We also investigate various AGN selection techniques and star formation rate (SFR) estimates using multi-wavelength data from Chandra, Spitzer and rest-frame optical spectra from the Keck telescope. We find that combining multi-wavelength identification techniques provides a more complete AGN sample, as each selection method suffers from selection biases. In particular, all selection techniques are biased against identifying AGN in lower mass galaxies. Once stellar mass selection biases are taken into account, we find that AGN reside in galaxies with similar physical properties (i.e., SFR) as inactive galaxies. We find that while AGN are prevalent in both star-forming and quiescent galaxies, AGN of a given accretion rate are more likely to reside in star-forming galaxies. The probability of fueling an AGN does not strongly depend on SFR for a star-forming galaxy, though it decreases when star formation is shut down in quiescent galaxies. We also find no evidence for a strong correlation between SFR or stellar mass of the host galaxy and AGN luminosity. These results indicate that while both AGN and galaxy growth are reliant on the same fuel, enhanced star formation activity does not necessarily go hand-in-hand with increased AGN activity. While the star formation activity of galaxies can be traced with various indicators, our investigations indicate that extrapolations from mid-infrared data using calibrations based on local galaxies overestimates SFRs at higher redshift. We show that a combina- tion of mid-infrared and far-infrared data provide a more reliable SFR estimation than the mid-infrared data alone. We also find that the robustness of UV-based SFRs depends on the extinction correction method used. We find a relatively small fraction of z 2 galaxies have SFRs from infrared observations that are elevated relative to other SFR tracers, and we do not find any contribution from AGN in this excess.
NASA Astrophysics Data System (ADS)
Narayanan, Desika; Davé, Romeel
2012-07-01
Observations of star-forming galaxies at high z have suggested discrepancies in the inferred star formation rates (SFRs) either between data and models or between complementary measures of the SFR. These putative discrepancies could all be alleviated if the stellar initial mass function (IMF) is systematically weighted towards more high-mass star formation in rapidly star-forming galaxies. Here, we explore how the IMF might vary under the central assumption that the turnover mass in the IMF, ?, scales with the Jeans mass in giant molecular clouds (GMCs), ?. We employ hydrodynamic simulations of galaxies coupled with radiative transfer models to predict how the typical GMC Jeans mass, and hence the IMF, varies with galaxy properties. We then study the impact of such an IMF on the star formation law, the SFR-M* relation, sub-millimetre galaxies (SMGs) and the cosmic SFR density. Our main results are: the H2 mass-weighted Jeans mass in a galaxy scales well with the SFR when the SFR is greater than a few M⊙ yr-1. Stellar population synthesis modelling shows that this results in a non-linear relation between SFR and Lbol, such that SFR ?. Using this model relation, the inferred SFR of local ultraluminous infrared galaxies decreases by a factor of ˜2, and that of high-z SMGs decreases by a factor of ˜3-5. At z˜ 2, this results in a lowered normalization of the SFR-M* relation in better agreement with models, a reduced discrepancy between the observed cosmic SFR density and stellar mass density evolution, and SMG SFRs that are easier to accommodate in current hierarchical structure formation models. It further results in a Kennicutt-Schmidt star formation law with a slope of ˜1.6 when utilizing a physically motivated form for the CO-H2 conversion factor that varies with galaxy physical property. While each of the discrepancies considered here could be alleviated without appealing to a varying IMF, the modest variation implied by assuming ? is a plausible solution that simultaneously addresses numerous thorny issues regarding the SFRs of high-z galaxies.
Modulation of activation-loop phosphorylation by JAK inhibitors is binding mode dependent
Bonenfant, Débora; Rubert, Joëlle; Vangrevelinghe, Eric; Scheufler, Clemens; Marque, Fanny; Régnier, Catherine H.; De Pover, Alain; Ryckelynck, Hugues; Bhagwat, Neha; Koppikar, Priya; Goel, Aviva; Wyder, Lorenza; Tavares, Gisele; Baffert, Fabienne; Pissot-Soldermann, Carole; Manley, Paul W.; Gaul, Christoph; Voshol, Hans; Levine, Ross L.; Sellers, William R.; Hofmann, Francesco; Radimerski, Thomas
2016-01-01
JAK inhibitors are being developed for the treatment of rheumatoid arthritis, psoriasis, myeloproliferative neoplasms and leukemias. Most of these drugs target the ATP-binding pocket and stabilize the active conformation of the JAK kinases. This type-I binding mode leads to an increase in JAK activation-loop phosphorylation, despite blockade of kinase function. Here we report that stabilizing the inactive state via type-II inhibition acts in the opposite manner, leading to a loss of activation-loop phosphorylation. We used X-ray crystallography to corroborate the binding mode and report for the first time the crystal structure of the JAK2 kinase domain in an inactive conformation. Importantly, JAK inhibitor-induced activation-loop phosphorylation requires receptor interaction, as well as intact kinase and pseudokinase domains. Hence, depending on the respective conformation stabilized by a JAK inhibitor, hyperphosphorylation of the activation-loop may or may not be elicited. PMID:22684457
VICTORIA Class Submarine Human-in-the-Loop Experimentation Plan
2014-06-01
1472G. VICTORIA Class Submarine Human-in-the-Loop Experimentation Plan and Preliminary Results © Her Majesty the Queen in Right of...19 th International Command and Control Research and Technology Symposium Title: VICTORIA Class Submarine Human-in-the-Loop...TYPE 3. DATES COVERED 00-00-2014 to 00-00-2014 4. TITLE AND SUBTITLE VICTORIA Class Submarine Human-in-the-Loop Experimentation Plan 5a. CONTRACT
Microstructure evolution of recrystallized Zircaloy-4 under charged particles irradiation
NASA Astrophysics Data System (ADS)
Gaumé, M.; Onimus, F.; Dupuy, L.; Tissot, O.; Bachelet, C.; Mompiou, F.
2017-11-01
Recrystallized zirconium alloys are used as nuclear fuel cladding tubes of Pressurized Water Reactors. During operation, these alloys are submitted to fast neutron irradiation which leads to their in-reactor deformation and to a change of their mechanical properties. These phenomena are directly related to the microstructure evolution under irradiation and especially to the formation of -type dislocation loops. In the present work, the radiation damage evolution in recrystallized Zircaloy-4 has been studied using charged particles irradiation. The loop nucleation and growth kinetics, and also the helical climb of linear dislocations, were observed in-situ using a High Voltage Electron Microscope (HVEM) under 1 MeV electron irradiation at 673 and 723 K. In addition, 600 keV Zr+ ion irradiations were conducted at the same temperature. Transmission Electron Microscopy (TEM) characterizations have been performed after both types of irradiations, and show dislocation loops with a Burgers vector belonging to planes close to { 10 1 bar 0 } first order prismatic planes. The nature of the loops has been characterized. Only interstitial dislocation loops have been observed after ion irradiation at 723 K. However, after electron irradiation conducted at 673 and 723 K, both interstitial and vacancy loops were observed, the proportion of interstitial loops increasing as the temperature is increased. The loop growth kinetics analysis shows that as the temperature increases, the loop number density decreases and the loop growth rate tends to increase. An increase of the flux leads to an increase of the loop number density and a decrease of the loop growth rate. The results are compared to previous works and discussed in the light of point defects diffusion.
Run-time parallelization and scheduling of loops
NASA Technical Reports Server (NTRS)
Saltz, Joel H.; Mirchandaney, Ravi; Crowley, Kay
1990-01-01
Run time methods are studied to automatically parallelize and schedule iterations of a do loop in certain cases, where compile-time information is inadequate. The methods presented involve execution time preprocessing of the loop. At compile-time, these methods set up the framework for performing a loop dependency analysis. At run time, wave fronts of concurrently executable loop iterations are identified. Using this wavefront information, loop iterations are reordered for increased parallelism. Symbolic transformation rules are used to produce: inspector procedures that perform execution time preprocessing and executors or transformed versions of source code loop structures. These transformed loop structures carry out the calculations planned in the inspector procedures. Performance results are presented from experiments conducted on the Encore Multimax. These results illustrate that run time reordering of loop indices can have a significant impact on performance. Furthermore, the overheads associated with this type of reordering are amortized when the loop is executed several times with the same dependency structure.
Antczak, Nicole M; Packer, Morgan R; Lu, Xueguang; Zhang, Ke; Beuning, Penny J
2017-11-20
DNA damage is a constant threat and can be bypassed in a process called translesion synthesis, which is typically carried out by Y-family DNA polymerases. Y-family DNA polymerases are conserved in all domains of life and tend to have specificity for certain types of DNA damage. Escherichia coli DinB and its human ortholog pol κ can bypass specific minor groove deoxyguanine adducts efficiently and are inhibited by major groove adducts, as Y-family DNA polymerases make contacts with the minor groove side of the DNA substrate and lack contacts with the major groove at the nascent base pair. DinB is inhibited by major groove adducts more than pol κ, and they each have active site loops of different lengths, with four additional amino acids in the DinB loop. We previously showed that the R35A active site loop mutation in DinB allows for bypass of the major groove adduct N 6 -furfuryl-dA. These observations led us to investigate the different active site loops by creating loop swap chimeras of DinB with a pol κ loop and vice versa by changing the loop residues in a stepwise fashion. We then determined their activity with undamaged DNA or DNA containing N 2 -furfuryl-dG or N 6 -furfuryl-dA. The DinB proteins with the pol kappa loop have low activity on all templates but have decreased misincorporation compared to either wild-type protein. The kappa proteins with the DinB loop retain activity on all templates and have decreased misincorporation compared to either wild-type protein. We assessed the thermal stability of the proteins and observed an increase in stability in the presence of all DNA templates and additional increases generally only in the presence of the undamaged and N 2 -furfuryl-dG adduct and dCTP, which correlates with activity. Overall we find that pol κ is more tolerant to changes in the active site loop than DinB.
DOE Office of Scientific and Technical Information (OSTI.GOV)
Kumar, Pankaj; Cho, Kyung-Suk; Innes, D. E., E-mail: pankaj@kasi.re.kr
2016-09-01
This paper presents multiwavelength observations of a flare-generated type II radio burst. The kinematics of the shock derived from the type II burst closely match a fast extreme ultraviolet (EUV) wave seen propagating through coronal arcade loops. The EUV wave was closely associated with an impulsive M1.0 flare without a related coronal mass ejection, and was triggered at one of the footpoints of the arcade loops in active region NOAA 12035. It was initially observed in the 335 Å images from the Atmospheric Image Assembly with a speed of ∼800 km s{sup −1} and it accelerated to ∼1490 km s{supmore » −1} after passing through the arcade loops. A fan–spine magnetic topology was revealed at the flare site. A small, confined filament eruption (∼340 km s{sup −1}) was also observed moving in the opposite direction to the EUV wave. We suggest that breakout reconnection in the fan–spine topology triggered the flare and associated EUV wave that propagated as a fast shock through the arcade loops.« less
Qualitative Analysis of Primary Fingerprint Pattern in Different Blood Group and Gender in Nepalese
Maharjan, Niroj; Adhikari, Nischita; Shrestha, Pragya
2018-01-01
Dermatoglyphics, the study of epidermal ridges on palm, sole, and digits, is considered as most effective and reliable evidence of identification. The fingerprints were studied in 300 Nepalese of known blood groups of different ages and classified into primary patterns and then analyzed statistically. In both sexes, incidence of loops was highest in ABO blood group and Rh +ve blood types, followed by whorls and arches, while the incidence of whorls was highest followed by loops and arches in Rh −ve blood types. Loops were higher in all blood groups except “A –ve” and “B –ve” where whorls were predominant. The fingerprint pattern in Rh blood types of blood group “A” was statistically significant while in others it was insignificant. In middle and little finger, loops were higher whereas in ring finger whorls were higher in all blood groups. Whorls were higher in thumb and index finger except in blood group “O” where loops were predominant. This study concludes that distribution of primary pattern of fingerprint is not related to gender and blood group but is related to individual digits. PMID:29593909
Magnetic Bianchi type II string cosmological model in loop quantum cosmology
NASA Astrophysics Data System (ADS)
Rikhvitsky, Victor; Saha, Bijan; Visinescu, Mihai
2014-07-01
The loop quantum cosmology of the Bianchi type II string cosmological model in the presence of a homogeneous magnetic field is studied. We present the effective equations which provide modifications to the classical equations of motion due to quantum effects. The numerical simulations confirm that the big bang singularity is resolved by quantum gravity effects.
Closed loop insulin delivery in diabetes.
Battelino, Tadej; Omladič, Jasna Šuput; Phillip, Moshe
2015-06-01
The primary goal of type 1 diabetes treatment is attaining near-normal glucose values. This currently remains out of reach for most people with type 1 diabetes despite intensified insulin treatment in the form of insulin analogues, educational interventions, continuous glucose monitoring, and sensor augmented insulin pump. The main remaining problem is risk of hypoglycaemia, which cannot be sufficiently reduced in all patient groups. Additionally, patients' burn-out often develops with years of tedious day-to-day diabetes management, rendering available diabetes-related technology less efficient. Over the past 40 years, several attempts have been made towards computer-programmed insulin delivery in the form of closed loop, with faster developments especially in the past decade. Automated insulin delivery has reduced human error in glycaemic control and considerably lessened the burden of routine self-management. In this chapter, data from randomized controlled trials with closed-loop insulin delivery that included type 1 diabetes population are summarized, and an evidence-based vision for possible routine utilization of closed loop is provided. Copyright © 2015 Elsevier Ltd. All rights reserved.
Quantization ambiguities and bounds on geometric scalars in anisotropic loop quantum cosmology
NASA Astrophysics Data System (ADS)
Singh, Parampreet; Wilson-Ewing, Edward
2014-02-01
We study quantization ambiguities in loop quantum cosmology that arise for space-times with non-zero spatial curvature and anisotropies. Motivated by lessons from different possible loop quantizations of the closed Friedmann-Lemaître-Robertson-Walker cosmology, we find that using open holonomies of the extrinsic curvature, which due to gauge-fixing can be treated as a connection, leads to the same quantum geometry effects that are found in spatially flat cosmologies. More specifically, in contrast to the quantization based on open holonomies of the Ashtekar-Barbero connection, the expansion and shear scalars in the effective theories of the Bianchi type II and Bianchi type IX models have upper bounds, and these are in exact agreement with the bounds found in the effective theories of the Friedmann-Lemaître-Robertson-Walker and Bianchi type I models in loop quantum cosmology. We also comment on some ambiguities present in the definition of inverse triad operators and their role.
VizieR Online Data Catalog: 6.7GHz methanol maser polarization in SFR (Surcis+, 2015)
NASA Astrophysics Data System (ADS)
Surcis, G.; Vlemmings, W. H. T.; van Langevelde, H. J.; Hutawarakorn Kramer, B.; Bartkiewicz, A.; Blasi, M. G.
2015-09-01
The first seven massive SFRs were observed at 6.7GHz in full polarization spectral mode with eight of the EVN antennas (Effelsberg, Jodrell, Onsala, Medicina, Noto, Torun, Westerbork, and Yebes-40m) between November 2012 and June 2013, for a total observation time of 49h. The bandwidth was 2MHz, providing a velocity range of ~100km/s. (8 data files).
NASA Astrophysics Data System (ADS)
Hernandez, Svea; Leitherer, Claus; Boquien, Médéric; Buat, Véronique; Burgarella, Denis; Calzetti, Daniela; Noll, Stefan
2018-04-01
We present a study of 7 star-forming galaxies from the Cosmic Evolution Survey (COSMOS) observed with the Cosmic Origins Spectrograph (COS) on board the Hubble Space Telescope (HST). The galaxies are located at relatively low redshifts, z ˜0.3, with morphologies ranging from extended and disturbed to compact and smooth. To complement the HST observations we also analyze observations taken with the VIMOS spectrograph on the Very Large Telescope (VLT). In our galaxy sample we identify three objects with double peak Lyman-α profiles similar to those seen in Green Pea compact galaxies and measure peak separations of 655, 374, and 275 km s-1. We measure Lyman-α escape fractions with values ranging between 5-13%. Given the low flux levels in the individual COS exposures we apply a weighted stacking approach to obtain a single spectrum. From this COS combined spectrum we infer upper limits for the absolute and relative Lyman continuum escape fractions of f_abs(LyC) = 0.4^{+10.1}_{-0.4}% and f_res(LyC) = 1.7^{+15.2}_{-1.7}%, respectively. Finally, we find that most of these galaxies have moderate UV and optical SFRs (SFRs ≲ 10 M⊙ yr-1).
Fertility patterns according to occupational grouping in Norway, 1989.
Strand, K; Wergeland, E; Bjerkedal, T
1996-03-01
In the early 1990s, most pregnant women in Norway were in gainful employment. This led to increased interest in the possible consequences for reproductive health, and a growing concern for the need to accommodate the pregnancy. We have therefore investigated how accurately general fertility rates predict the number of pregnancies in the workforce. Fertility rates (FR) among employed women and standardized fertility ratios (SFR) in occupational groups were estimated on the basis of information from the Labour Market Statistics and the national survey "Pregnancy and Work", Norway, 1989. The fertility rate among employed women was 17% higher than the general fertility rate. Two occupational groups had significantly different SFRs: technical/professional workers (SFR 118) and transport/communication workers (SFR 82). In addition, differences were found for parity-specific SFRs in administrative/executive work (SFR nullipara 80, SFR para 125) and service work (SFR nullipara 114, SFR para 80). We suggest that work status and occupation should be included among the variables registered in the Medical Birth Registry of Norway, in order to facilitate routine presentations of fertility rates and pregnancy outcomes for women in paid work. The results further indicate that work-specific conditions influence first-birth fertility. This should be explored in demographic studies of the relation between women's fertility and participation in paid work.
NASA Astrophysics Data System (ADS)
Hernandez, Svea; Leitherer, Claus; Boquien, Médéric; Buat, Véronique; Burgarella, Denis; Calzetti, Daniela; Noll, Stefan
2018-07-01
We present a study of seven star-forming galaxies from the Cosmic Evolution Survey observed with the Cosmic Origins Spectrograph (COS) onboard the Hubble Space Telescope (HST). The galaxies are located at relatively low redshifts, z ˜ 0.3, with morphologies ranging from extended and disturbed to compact and smooth. To complement the HST observations, we also analyse observations taken with the Visible Multi-object Spectrograph (VIMOS) on the Very Large Telescope (VLT). In our galaxy sample, we identify three objects with double peak Lyman-α profiles similar to those seen in Green Pea compact galaxies and measure peak separations of 655, 374, and 275 km s-1. We measure Lyman-α escape fractions with values ranging between 5 per cent and 13 per cent. Given the low flux levels in the individual COS exposures, we apply a weighted stacking approach to obtain a single spectrum. From this COS combined spectrum, we infer upper limits for the absolute and relative Lyman continuum escape fractions of f_abs(LyC) = 0.4^{+10.1}_{-0.4} per cent and f_res(LyC) = 1.7^{+15.2}_{-1.7}per cent, respectively. Finally, we find that most of these galaxies have moderate ultraviolet and optical star formation rates (SFRs) (SFRs ≲10 M⊙ yr-1).
DOE Office of Scientific and Technical Information (OSTI.GOV)
Butler, Michael J.; Tan, Jonathan C.; Teyssier, Romain
2017-06-01
Star formation from the interstellar medium of galactic disks is a basic process controlling the evolution of galaxies. Understanding the star formation rate (SFR) in a local patch of a disk with a given gas mass is thus an important challenge for theoretical models. Here we simulate a kiloparsec region of a disk, following the evolution of self-gravitating molecular clouds down to subparsec scales, as they form stars that then inject feedback energy by dissociating and ionizing UV photons and supernova explosions. We assess the relative importance of each feedback mechanism. We find that H{sub 2}-dissociating feedback results in themore » largest absolute reduction in star formation compared to the run with no feedback. Subsequently adding photoionization feedback produces a more modest reduction. Our fiducial models that combine all three feedback mechanisms yield, without fine-tuning, SFRs that are in excellent agreement with observations, with H{sub 2}-dissociating photons playing a crucial role. Models that only include supernova feedback—a common method in galaxy evolution simulations—settle to similar SFRs, but with very different temperatures and chemical states of the gas, and with very different spatial distributions of young stars.« less
Star-formation rate in compact star-forming galaxies
NASA Astrophysics Data System (ADS)
Izotova, I. Y.; Izotov, Y. I.
2018-03-01
We use the data for the Hβ emission-line, far-ultraviolet (FUV) and mid-infrared 22 μm continuum luminosities to estimate star formation rates < SFR > averaged over the galaxy lifetime for a sample of about 14000 bursting compact star-forming galaxies (CSFGs) selected from the Data Release 12 (DR12) of the Sloan Digital Sky Survey (SDSS). The average coefficient linking < SFR > and the star formation rate SFR0 derived from the Hβ luminosity at zero starburst age is found to be 0.04. We compare < SFR > s with some commonly used SFRs which are derived adopting a continuous star formation during a period of {˜} 100 Myr, and find that the latter ones are 2-3 times higher. It is shown that the relations between SFRs derived using a geometric mean of two star-formation indicators in the UV and IR ranges and reduced to zero starburst age have considerably lower dispersion compared to those with single star-formation indicators. We suggest that our relations for < SFR > determination are more appropriate for CSFGs because they take into account a proper temporal evolution of their luminosities. On the other hand, we show that commonly used SFR relations can be applied for approximate estimation within a factor of {˜} 2 of the < SFR > averaged over the lifetime of the bursting compact galaxy.
Dual Active Galactic Nuclei in Nearby Galaxies
NASA Astrophysics Data System (ADS)
Das, Mousumi; Rubinur, Khatun; Karb, Preeti; Varghese, Ashlin; Novakkuni, Navyasree; James, Atul
2018-04-01
Galaxy mergers play a crucial role in the formation of massive galaxies and the buildup of their bulges. An important aspect of the merging process is the in-spiral of the supermassive black-holes (SMBHs) to the centre of the merger remnant and the eventual formation of a SMBH binary. If both the SMBHs are accreting they will form a dual or binary active galactic nucleus (DAGN). The final merger remnant is usually very bright and shows enhanced star formation. In this paper we summarise the current sample of DAGN from previous studies and describe methods that can be used to identify strong DAGN candidates from optical and spectroscopic surveys. These methods depend on the Doppler separation of the double peaked AGN emission lines, the nuclear velocity dispersion of the galaxies and their optical/UV colours. We describe two high resolution, radio observations of DAGN candidates that have been selected based on their double peaked optical emission lines (DPAGN). We also examine whether DAGN host galaxies have higher star formation rates (SFRs) compared to merging galaxies that do not appear to have DAGN. We find that the SFR is not higher for DAGN host galaxies. This suggests that the SFRs in DAGN host galaxies is due to the merging process itself and not related to the presence of two AGN in the system.
NASA Astrophysics Data System (ADS)
Ogle, Patrick M.; Lanz, Lauranne; Nader, Cyril; Helou, George
2016-02-01
We report the discovery of spiral galaxies that are as optically luminous as elliptical brightest cluster galaxies, with r-band monochromatic luminosity Lr = 8-14L* (4.3-7.5 × 1044 erg s-1). These super spiral galaxies are also giant and massive, with diameter D = 57-134 kpc and stellar mass Mstars = 0.3-3.4 × 1011M⊙. We find 53 super spirals out of a complete sample of 1616 SDSS galaxies with redshift z < 0.3 and Lr > 8L*. The closest example is found at z = 0.089. We use existing photometry to estimate their stellar masses and star formation rates (SFRs). The SDSS and Wide-field Infrared Survey Explorer colors are consistent with normal star-forming spirals on the blue sequence. However, the extreme masses and rapid SFRs of 5-65 M⊙ yr-1 place super spirals in a sparsely populated region of parameter space, above the star-forming main sequence of disk galaxies. Super spirals occupy a diverse range of environments, from isolation to cluster centers. We find four super spiral galaxy systems that are late-stage major mergers—a possible clue to their formation. We suggest that super spirals are a remnant population of unquenched, massive disk galaxies. They may eventually become massive lenticular galaxies after they are cut off from their gas supply and their disks fade.
Watch what you type: the role of visual feedback from the screen and hands in skilled typewriting.
Snyder, Kristy M; Logan, Gordon D; Yamaguchi, Motonori
2015-01-01
Skilled typing is controlled by two hierarchically structured processing loops (Logan & Crump, 2011): The outer loop, which produces words, commands the inner loop, which produces keystrokes. Here, we assessed the interplay between the two loops by investigating how visual feedback from the screen (responses either were or were not echoed on the screen) and the hands (the hands either were or were not covered with a box) influences the control of skilled typing. Our results indicated, first, that the reaction time of the first keystroke was longer when responses were not echoed than when they were. Also, the interkeystroke interval (IKSI) was longer when the hands were covered than when they were visible, and the IKSI for responses that were not echoed was longer when explicit error monitoring was required (Exp. 2) than when it was not required (Exp. 1). Finally, explicit error monitoring was more accurate when response echoes were present than when they were absent, and implicit error monitoring (i.e., posterror slowing) was not influenced by visual feedback from the screen or the hands. These findings suggest that the outer loop adjusts the inner-loop timing parameters to compensate for reductions in visual feedback. We suggest that these adjustments are preemptive control strategies designed to execute keystrokes more cautiously when visual feedback from the hands is absent, to generate more cautious motor programs when visual feedback from the screen is absent, and to enable enough time for the outer loop to monitor keystrokes when visual feedback from the screen is absent and explicit error reports are required.
Parallel Digital Phase-Locked Loops
NASA Technical Reports Server (NTRS)
Sadr, Ramin; Shah, Biren N.; Hinedi, Sami M.
1995-01-01
Wide-band microwave receivers of proposed type include digital phase-locked loops in which band-pass filtering and down-conversion of input signals implemented by banks of multirate digital filters operating in parallel. Called "parallel digital phase-locked loops" to distinguish them from other digital phase-locked loops. Systems conceived as cost-effective solution to problem of filtering signals at high sampling rates needed to accommodate wide input frequency bands. Each of M filters process 1/M of spectrum of signal.
Ruan, Yue; Bally, Lia; Thabit, Hood; Leelarathna, Lalantha; Hartnell, Sara; Tauschmann, Martin; Wilinska, Malgorzata E; Evans, Mark L; Mader, Julia K; Kojzar, Harald; Dellweg, Sibylle; Benesch, Carsten; Arnolds, Sabine; Pieber, Thomas R; Hovorka, Roman
2018-03-25
Glucose excursion was assessed prior to and post hypoglycaemia to increase understanding of hypoglycaemia incidence and recovery during hybrid closed-loop insulin delivery. We retrospectively analysed data from 60 adults with type 1 diabetes who received, in a crossover randomized design, day-and-night hybrid closed-loop insulin delivery and insulin pump therapy, the latter with or without real-time continuous glucose monitoring. Over 4-week study periods, we identified hypoglycaemic episodes, defined as sensor glucose <3.0 mmol/L, and analysed sensor glucose relative to the onset of hypoglycaemia. We identified 377 hypoglycaemic episodes during hybrid closed-loop intervention vs 662 during control intervention (P < .001), with a predominant reduction of nocturnal hypoglycaemia. The slope of sensor glucose prior to hypoglycaemia was steeper during closed-loop intervention than during control intervention (P < .01), while insulin delivery was reduced (P < .01). During both day and night, participants recovered from hypoglycaemia faster when treated by closed-loop intervention. At 120 minutes post hypoglycaemia, sensor glucose levels were higher during closed-loop intervention compared to the control period (P < .05). In conclusion, closed-loop intervention reduces the risk of hypoglycaemia, particularly overnight, with swift recovery from hypoglycaemia leading to higher 2-hour post-hypoglycaemia glucose levels. © 2018 John Wiley & Sons Ltd.
Guerra, Yasel; Valiente, Pedro A; Pons, Tirso; Berry, Colin; Rudiño-Piñera, Enrique
2016-08-01
Bi-functional inhibitors from the Kunitz-type soybean trypsin inhibitor (STI) family are glycosylated proteins able to inhibit serine and aspartic proteases. Here we report six crystal structures of the wild-type and a non-glycosylated mutant of the bifunctional inhibitor E3Ad obtained at different pH values and space groups. The crystal structures show that E3Ad adopts the typical β-trefoil fold of the STI family exhibiting some conformational changes due to pH variations and crystal packing. Despite the high sequence identity with a recently reported potato cathepsin D inhibitor (PDI), three-dimensional structures obtained in this work show a significant conformational change in the protease-binding loop proposed for aspartic protease inhibition. The E3Ad binding loop for serine protease inhibition is also proposed, based on structural similarity with a novel non-canonical conformation described for the double-headed inhibitor API-A from the Kunitz-type STI family. In addition, structural and sequence analyses suggest that bifunctional inhibitors of serine and aspartic proteases from the Kunitz-type STI family are more similar to double-headed inhibitor API-A than other inhibitors with a canonical protease-binding loop. Copyright © 2016. Published by Elsevier Inc.
On the Loop Current Penetration into the Gulf of Mexico
NASA Astrophysics Data System (ADS)
Weisberg, Robert H.; Liu, Yonggang
2017-12-01
The Gulf of Mexico Loop Current generally intrudes some distance into the Gulf of Mexico before shedding an anticyclonic eddy and retreating back to its more direct entry to exit pathway. The control of this aperiodic process remains only partially known. Here we describe the evolution of the Loop Current throughout the era of satellite altimetry, and offer a mechanistic hypothesis on Loop Current intrusion. As a complement to the known effects of Loop Current forcing on the west Florida shelf circulation, we argue that the west Florida shelf, in turn, impacts the Loop Current evolution. A Self-Organizing Map analysis shows that anomalous northward penetrations of the Loop Current into the Gulf of Mexico occur when the eastern side of Loop Current is positioned west from the southwest corner of the west Florida shelf, whereas the more direct inflow to outflow route occurs when the eastern side of the Loop Current comes in contact with the southwest corner of the west Florida shelf. In essence, we argue that the west Florida shelf anchors the Loop Current in its direct path configuration and that farther northward penetration into the Gulf of Mexico occurs when such anchoring is released. To test of this hypothesis heuristically, we estimate that the dissipation and buoyancy work due to known Loop Current forcing of the west Florida shelf circulation (when in contact with the southwest corner) may exceed the pressure work required for the Loop Current to advance against the ambient Gulf of Mexico fluid.
NASA Astrophysics Data System (ADS)
Adenariwo, Adepoju
The efficiency of nuclear reactors can be improved by increasing the operating pressure of current nuclear reactors. Current CANDU-type nuclear reactors use heavy water as coolant at an outlet pressure of up to 11.5 MPa. Conceptual SuperCritical Water Reactors (SCWRs) will operate at a higher coolant outlet pressure of 25 MPa. Supercritical water technology has been used in advanced coal plants and its application proves promising to be employed in nuclear reactors. To better understand how supercritical water technology can be applied in nuclear power plants, supercritical water loops are used to study the heat transfer phenomena as it applies to CANDU-type reactors. A conceptual design of a loop known as the Supercritical Phenomena Experimental Apparatus (SPETA) has been done. This loop has been designed to fit in a 9 m by 2 m by 2.8 m enclosure that will be installed at the University of Ontario Institute of Technology Energy Research Laboratory. The loop include components to safely start up and shut down various test sections, produce a heat source to the test section, and to remove reject heat. It is expected that loop will be able to investigate the behaviour of supercritical water in various geometries including bare tubes, annulus tubes, and multi-element-type bundles. The experimental geometries are designed to match the fluid properties of Canadian SCWR fuel channel designs so that they are representative of a practical application of supercritical water technology in nuclear plants. This loop will investigate various test section orientations which are the horizontal, vertical, and inclined to investigate buoyancy effects. Frictional pressure drop effects and satisfactory methods of estimating hydraulic resistances in supercritical fluid shall also be estimated with the loop. Operating limits for SPETA have been established to be able to capture the important heat transfer phenomena at supercritical conditions. Heat balance and flow calculations have been done to appropriately size components in the loop. Sensitivity analysis has been done to find the optimum design for the loop.
Tauschmann, Martin; Allen, Janet M; Wilinska, Malgorzata E; Thabit, Hood; Stewart, Zoë; Cheng, Peiyao; Kollman, Craig; Acerini, Carlo L; Dunger, David B; Hovorka, Roman
2016-07-01
To evaluate feasibility, safety, and efficacy of day-and-night hybrid closed-loop insulin delivery in adolescents with type 1 diabetes under free-living conditions without remote monitoring or supervision. In an open-label, randomized, free-living, crossover study design, 12 adolescents receiving insulin pump therapy (mean [±SD] age 15.4 ± 2.6 years; HbA1c 8.3 ± 0.9%; duration of diabetes 8.2 ± 3.4 years) underwent two 7-day periods of sensor-augmented insulin pump therapy or hybrid closed-loop insulin delivery without supervision or remote monitoring. During the closed-loop insulin delivery, a model predictive algorithm automatically directed insulin delivery between meals and overnight; prandial boluses were administered by participants using a bolus calculator. The proportion of time when the sensor glucose level was in the target range (3.9-10 mmol/L) was increased during closed-loop insulin delivery compared with sensor-augmented pump therapy (72 vs. 53%, P < 0.001; primary end point), the mean glucose concentration was lowered (8.7 vs. 10.1 mmol/L, P = 0.028), and the time spent above the target level was reduced (P = 0.005) without changing the total daily insulin amount (P = 0.55). The time spent in the hypoglycemic range was low and comparable between interventions. Unsupervised day-and-night hybrid closed-loop insulin delivery at home is feasible and safe in young people with type 1 diabetes. Compared with sensor-augmented insulin pump therapy, closed-loop insulin delivery may improve glucose control without increasing the risk of hypoglycemia in adolescents with suboptimally controlled type 1 diabetes. © 2016 by the American Diabetes Association. Readers may use this article as long as the work is properly cited, the use is educational and not for profit, and the work is not altered.
NASA Astrophysics Data System (ADS)
Bell, Cameron P. M.
2012-11-01
In this thesis a critical assessment of the ages derived using theoretical pre-main-sequence (pre-MS) stellar evolutionary models is presented by comparing the predictions to the low-mass pre-MS population of 14 young star-forming regions (SFRs) in colour-magnitude diagrams (CMDs). Deriving pre-MS ages requires precise distances and estimates of the reddening. Therefore, the main-sequence (MS) members of the SFRs have been used to derive a self-consistent set of statistically robust ages, distances and reddenings with associated uncertainties using a maximum-likelihood fitting statistic and MS evolutionary models. A photometric method for de-reddening individual stars - known as the Q-method - in regions where the extinction is spatially variable has been updated and is presented. The effects of both the model dependency and the SFR composition on these derived parameters are also discussed. The problem of calibrating photometric observations of red pre-MS stars is examined and it is shown that using observations of MS stars to transform the data into a standard photometric system can introduce significant errors in the position of the pre-MS locus in CMD space. Hence, it is crucial that precise photometric studies - especially of pre-MS objects - be carried out in the natural photometric system of the observations. This therefore requires a robust model of the system responses for the instrument used, and thus the calculated responses for the Wide-Field Camera on the Isaac Newton Telescope are presented. These system responses have been tested using standard star observations and have been shown to be a good representation of the photometric system. A benchmark test for the pre-MS evolutionary models is performed by comparing them to a set of well-calibrated CMDs of the Pleiades in the wavelength regime 0.4-2.5 μm. The masses predicted by these models are also tested against dynamical masses using a sample of MS binaries by calculating the system magnitude in a given photometric bandpass. This analysis shows that for Teff ≤ 4000 K the models systematically overestimate the flux by a factor of 2 at 0.5 μm, though this decreases with wavelength, becoming negligible at 2.2 μm. Thus before the pre-MS models are used to derive ages, a recalibration of the models is performed by incorporating an empirical colour-Teff relation and bolometric corrections based on the Ks-band luminosity of Pleiades members, with theoretical corrections for the dependence on the surface gravity (log g). The recalibrated pre-MS model isochrones are used to derive ages from the pre-MS populations of the SFRs. These ages are then compared with the MS derivations, thus providing a powerful diagnostic tool with which to discriminate between the different pre-MS age scales that arise from a much stronger model dependency in the pre-MS regime. The revised ages assigned to each of the 14 SFRs are up to a factor two older than previous derivations, a result with wide-ranging implications, including that circumstellar discs survive longer and that the average Class II lifetime is greater than currently believed.
An Exploration of Human Well-Being Bundles as Identifiers of Ecosystem Service Use Patterns.
Hamann, Maike; Biggs, Reinette; Reyers, Belinda
2016-01-01
We take a social-ecological systems perspective to investigate the linkages between ecosystem services and human well-being in South Africa. A recent paper identified different types of social-ecological systems in the country, based on distinct bundles of ecosystem service use. These system types were found to represent increasingly weak direct feedbacks between nature and people, from rural "green-loop" communities to urban "red-loop" societies. Here we construct human well-being bundles and explore whether the well-being bundles can be used to identify the same social-ecological system types that were identified using bundles of ecosystem service use. Based on national census data, we found three distinct well-being bundle types that are mainly characterized by differences in income, unemployment and property ownership. The distribution of these well-being bundles approximates the distribution of ecosystem service use bundles to a substantial degree: High levels of income and education generally coincided with areas characterised by low levels of direct ecosystem service use (or red-loop systems), while the majority of low well-being areas coincided with medium and high levels of direct ecosystem service use (or transition and green-loop systems). However, our results indicate that transformations from green-loop to red-loop systems do not always entail an immediate improvement in well-being, which we suggest may be due to a time lag between changes in the different system components. Using human well-being bundles as an indicator of social-ecological dynamics may be useful in other contexts since it is based on socio-economic data commonly collected by governments, and provides important insights into the connections between ecosystem services and human well-being at policy-relevant sub-national scales.
Electron acceleration and radiation signatures in loop coronal transients
NASA Technical Reports Server (NTRS)
Vlahos, L.; Gergely, T. E.; Papadopoulos, K.
1982-01-01
It is proposed that in loop coronal transients an erupting loop moves away from the solar surface, with a velocity exceeding the local Alfven speed, pushing against the overlying magnetic fields and driving a shock in the front of the moving part of the loop. Lower hybrid waves are excited at the shock front and propagate radially toward the center of the loop with phase velocity along the magnetic field that exceeds the thermal velocity. The lower hybrid waves stochastically accelerate the tail of the electron distribution inside the loop. The manner in which the accelerated electrons are trapped in the moving loop are discussed, and their radiation signature is estimated. It is suggested that plasma radiation can explain the power observed in stationary and moving type IV bursts.
Noncoherent pseudonoise code tracking performance of spread spectrum receivers
NASA Technical Reports Server (NTRS)
Simon, M. K.
1977-01-01
The optimum design and performance of two noncoherent PN tracking loop configurations, namely, the delay-locked loop and tau-dither loop, are described. In particular, the bandlimiting effects of the bandpass arm filters are considered by demonstrating that for a fixed data rate and data signal-to-noise ratio, there exists an optimum filter bandwidth in the sense of minimizing the loop's tracking jitter. Both the linear and nonlinear loop analyses are presented, and the region of validity of the former relative to the latter is indicated. In addition, numerical results are given for several filter types. For example, assuming ideal bandpass arm filters, it is shown that the tau-dither loop requires approximately 1 dB more signal-to-noise ratio than the delay-locked loop for equal rms tracking jitters.
Surgical management of urinary stones with abnormal kidney anatomy.
Ergin, Giray; Kirac, Mustafa; Unsal, Ali; Kopru, Burak; Yordam, Mustafa; Biri, Hasan
2017-04-01
In spite of the fact that urologic surgical techniques used by urologists are becoming more and more minimally invasive and easier because of developing technologies, surgical approaches for the urinary stones in kidneys with abnormal anatomy are still confusing. The objective of this article is to determine the treatment options in these kidneys. For this purpose, between 2005 and 2015, we retrospectively evaluated patients operated for urolithiasis with various congenital renal anomalies in five referral urology clinics in our country. Of the 178 patients (110 male, 60 female), 96 had horseshoe kidneys, 42 had pelvic ectopic kidneys (PEKs), and 40 had isolated rotation anomalies (IRAs) of the kidney. We evaluated the patients for stone-free rate (SFR), mean operation time, mean hospitalization time, and complication rate. In horseshoe kidney, SFRs for retrograde intrarenal surgery (RIRS) and percutaneous nephrolithotomy (PNL) groups were 72.2% and 90%, respectively. In PEKs, these rates were 83.6% and 100% for RIRS and laparoscopic pyelolithotomy, respectively. SFRs in kidneys with IRA were 75% for RIRS and 83.3% for PNL. The mean operation time for RIRS and PNL groups in horseshoe kidney was 40.5±11.2 minutes and 74.5±19.3 minutes, respectively. In PEKs, these times were 52.1±19.3 minutes and 53.1±24.3 minutes for RIRS and laparoscopic pyelolithotomy, respectively. Mean operation time in kidneys with IRA was 48.7±14.4 minutes for RIRS and 53.2±11.3 minutes for PNL. Mean hospitalization times for RIRS and PNL groups in horseshoe kidneys were 1.4±0.7 days and 2.2±1.4 days, respectively. In PEKs, these times were 2.7±1.8 days and 1.9±0.4 days for RIRS and laparoscopic pyelolithotomy, respectively. Mean operation time in kidneys with IRA was 1.5±0.9 days for RIRS and 1.8±0.6 days for PNL. The results of our study showed that RIRS could be used in all of types of abnormal kidneys with small- and medium-sized renal calculi safely and satisfactorily. Copyright © 2017. Published by Elsevier Taiwan.
DOE Office of Scientific and Technical Information (OSTI.GOV)
Straatman, Caroline M. S.; Labbé, Ivo; Van Houdt, Josha
The FourStar galaxy evolution survey (ZFOURGE) is a 45 night legacy program with the FourStar near-infrared camera on Magellan and one of the most sensitive surveys to date. ZFOURGE covers a total of 400 arcmin{sup 2} in cosmic fields CDFS, COSMOS and UDS, overlapping CANDELS. We present photometric catalogs comprising >70,000 galaxies, selected from ultradeep K {sub s} -band detection images (25.5–26.5 AB mag, 5 σ , total), and >80% complete to K {sub s} < 25.3–25.9 AB. We use 5 near-IR medium-bandwidth filters ( J {sub 1}, J {sub 2}, J {sub 3}, H {sub s} , H {submore » l} ) as well as broad-band K {sub s} at 1.05–2.16 μ m to 25–26 AB at a seeing of ∼0.″5. Each field has ancillary imaging in 26–40 filters at 0.3–8 μ m. We derive photometric redshifts and stellar population properties. Comparing with spectroscopic redshifts indicates a photometric redshift uncertainty σ {sub z} = 0.010, 0.009, and 0.011 in CDFS, COSMOS, and UDS. As spectroscopic samples are often biased toward bright and blue sources, we also inspect the photometric redshift differences between close pairs of galaxies, finding σ {sub z} {sub ,pairs} = 0.01–0.02 at 1 < z < 2.5. We quantify how σ {sub z} {sub ,pairs} depends on redshift, magnitude, spectral energy distribution type, and the inclusion of FourStar medium bands. σ {sub z} {sub ,pairs} is smallest for bright, blue star-forming samples, while red star-forming galaxies have the worst σ {sub z} {sub ,pairs}. Including FourStar medium bands reduces σ {sub z} {sub ,pairs} by 50% at 1.5 < z < 2.5. We calculate star formation rates (SFRs) based on ultraviolet and ultradeep far-IR Spitzer /MIPS and Herschel /PACS data. We derive rest-frame U − V and V − J colors, and illustrate how these correlate with specific SFR and dust emission to z = 3.5. We confirm the existence of quiescent galaxies at z ∼ 3, demonstrating their SFRs are suppressed by > ×15.« less
Ruan, Yue; Thabit, Hood; Leelarathna, Lalantha; Hartnell, Sara; Willinska, Malgorzata E; Dellweg, Sibylle; Benesch, Carsten; Mader, Julia K; Holzer, Manuel; Kojzar, Harald; Evans, Mark L; Pieber, Thomas R; Arnolds, Sabine; Hovorka, Roman
2016-05-01
To quantify variability of insulin requirements during closed-loop insulin delivery. We retrospectively analyzed overnight, daytime, and total daily insulin amounts delivered during a multicenter closed-loop trial involving 32 adults with type 1 diabetes. Participants applied hybrid day-and-night closed-loop insulin delivery under free-living home conditions over 12 weeks. The coefficient of variation was adopted to measure variability of insulin requirements in individual subjects. Data were analyzed from 1,918 nights, 1,883 daytime periods and 1,564 total days characterized by closed-loop use over 85% of time. Variability of overnight insulin requirements (mean [SD] coefficient of variation 31% [4]) was nearly twice as high as variability of total daily requirements (17% [3], P < 0.001) and was also higher than variability of daytime insulin requirements (22% [4], P < 0.001). Overnight insulin requirements were significantly more variable than daytime and total daily amounts. This may explain why some people with type 1 diabetes report frustrating variability in morning glycemia. © 2016 by the American Diabetes Association. Readers may use this article as long as the work is properly cited, the use is educational and not for profit, and the work is not altered.
Kaul, R; Angeles, A R; Jäger, M; Powers, E T; Kelly, J W
2001-06-06
To probe the conformational requirements of loop 1 in the Pin1 WW domain, the residues at the i + 2 and i + 3 positions of a beta-turn within this loop were replaced by dPro-Gly and Asn-Gly, which are known to prefer the conformations required at the i + 1 and i + 2 positions of type II' and type I' beta-turns. Conformational specificity or lack thereof was further examined by incorporating into the i + 2 and i + 3 positions a non-alpha-amino acid-based beta-turn mimetic (4-(2'-aminoethyl)-6-dibenzofuran propionic acid residue, 1), which was designed to replace the i + 1 and i + 2 positions of beta-turns. All these Pin WW variants are monomeric and folded as discerned by analytical ultracentrifugation, NMR, and CD. They exhibit cooperative two-state transitions and display thermodynamic stability within 0.5 kcal/mol of the wild-type WW domain, demonstrating that the acquisition of native structure and stability does not require a specific sequence and, by extension, conformation within loop 1. However, it could be that these loop 1 mutations alter the kinetics of antiparallel beta-sheet folding, which will be addressed by subsequent kinetic studies.
RECURRENT TWO-SIDED LOOP-TYPE JETS DUE TO A BIPOLE EMERGING BELOW TRANSEQUATORIAL LOOPS
DOE Office of Scientific and Technical Information (OSTI.GOV)
Jiang, Yunchun; Bi, Yi; Yang, Jiayan
2013-10-01
We report four successive two-sided loop-type jets centered around a small bipole emerging below transequatorial interconnecting loops (TILs). They occurred at the very first emerging stage of the bipole in a short recurrent period of only 12 minutes. During this term, the emerging flux consisted of a main bipole, but showed a mixed-polarity field morphology with the appearance and then disappearance of a small magnetic feature in its interior. However, no associated cancellation of the bipole with the nearby flux was observed in this process. In multi-wavelength EUV images, the jets started nearly simultaneously and were similar in appearance. Eachmore » jet consisted of a pair of components that connected to two bright footpoints around the bipole and were ejected from the emergence location to opposite directions. While the two bright footpoints were separated by a gap and had consistent evolution with that of the bipole, the jet base region covering them accordingly showed four episodes of emission enhancement that peaked approximately at the jet start times. Compatible with the magnetic-reconnection jet mechanism, the recurrent two-sided loop-type jets are explained as a result of reconnection between the emerging bipole and the overlying TILs.« less
Chemical Looping Technology: Oxygen Carrier Characteristics.
Luo, Siwei; Zeng, Liang; Fan, Liang-Shih
2015-01-01
Chemical looping processes are characterized as promising carbonaceous fuel conversion technologies with the advantages of manageable CO2 capture and high energy conversion efficiency. Depending on the chemical looping reaction products generated, chemical looping technologies generally can be grouped into two types: chemical looping full oxidation (CLFO) and chemical looping partial oxidation (CLPO). In CLFO, carbonaceous fuels are fully oxidized to CO2 and H2O, as typically represented by chemical looping combustion with electricity as the primary product. In CLPO, however, carbonaceous fuels are partially oxidized, as typically represented by chemical looping gasification with syngas or hydrogen as the primary product. Both CLFO and CLPO share similar operational features; however, the optimum process configurations and the specific oxygen carriers used between them can vary significantly. Progress in both CLFO and CLPO is reviewed and analyzed with specific focus on oxygen carrier developments that characterize these technologies.
Run-time parallelization and scheduling of loops
NASA Technical Reports Server (NTRS)
Saltz, Joel H.; Mirchandaney, Ravi; Baxter, Doug
1988-01-01
The class of problems that can be effectively compiled by parallelizing compilers is discussed. This is accomplished with the doconsider construct which would allow these compilers to parallelize many problems in which substantial loop-level parallelism is available but cannot be detected by standard compile-time analysis. We describe and experimentally analyze mechanisms used to parallelize the work required for these types of loops. In each of these methods, a new loop structure is produced by modifying the loop to be parallelized. We also present the rules by which these loop transformations may be automated in order that they be included in language compilers. The main application area of the research involves problems in scientific computations and engineering. The workload used in our experiment includes a mixture of real problems as well as synthetically generated inputs. From our extensive tests on the Encore Multimax/320, we have reached the conclusion that for the types of workloads we have investigated, self-execution almost always performs better than pre-scheduling. Further, the improvement in performance that accrues as a result of global topological sorting of indices as opposed to the less expensive local sorting, is not very significant in the case of self-execution.
Ion-irradiation-induced microstructural modifications in ferritic/martensitic steel T91
DOE Office of Scientific and Technical Information (OSTI.GOV)
Liu, Xiang; Miao, Yinbin; Li, Meimei
In this paper, in situ transmission electron microscopy investigations were carried out to study the microstructural evolution of ferritic/martensitic steel T91 under 1 MeV Krypton ion irradiation up to 4.2 x 10(15) ions/cm(2) at 573 K, 673 K, and 773 K. At 573 K, grown-in defects are strongly modified by black dot loops, and dislocation networks together with black-dot loops were observed after irradiation. At 673 K and 773 K, grown-in defects are only partially modified by dislocation loops; isolated loops and dislocation segments were commonly found after irradiation. Post irradiation examination indicates that at 4.2 x 1015 ions/cm(2), aboutmore » 51% of the loops were a(0)/2 < 111 > type for the 673 K irradiation, and the dominant loop type was a(0)< 100 > for the 773 K irradiation. Finally, a dispersed barrier hardening model was employed to estimate the change in yield strength, and the calculated ion data were found to follow the similar trend as the existing neutron data with an offset of 100-150 MPa. (C) 2017 Elsevier B.V. All rights reserved.« less
Natural selection for costly nutrient recycling in simulated microbial metacommunities.
Boyle, Richard A; Williams, Hywel T P; Lenton, Timothy M
2012-11-07
Recycling of essential nutrients occurs at scales from microbial communities to global biogeochemical cycles, often in association with ecological interactions in which two or more species utilise each others' metabolic by-products. However, recycling loops may be unstable; sequences of reactions leading to net recycling may be parasitised by side-reactions causing nutrient loss, while some reactions in any closed recycling loop are likely to be costly to participants. Here we examine the stability of nutrient recycling loops in an individual-based ecosystem model based on microbial functional types that differ in their metabolism. A supplied nutrient is utilised by a "source" functional type, generating a secondary nutrient that is subsequently used by two other types-a "mutualist" that regenerates the initial nutrient at a growth rate cost, and a "parasite" that produces a refractory waste product but does not incur any additional cost. The three functional types are distributed across a metacommunity in which separate patches are linked by a stochastic diffusive migration process. Regions of high mutualist abundance feature high levels of nutrient recycling and increased local population density leading to greater export of individuals, allowing the source-mutualist recycling loop to spread across the system. Individual-level selection favouring parasites is balanced by patch-level selection for high productivity, indirectly favouring mutualists due to the synergistic productivity benefits of the recycling loop they support. This suggests that multi-level selection may promote nutrient cycling and thereby help to explain the apparent ubiquity and stability of nutrient recycling in nature.
Hendrieckx, Christel; Poole, Lucinda A; Sharifi, Amin; Jayawardene, Dilshani; Loh, Margaret M; Horsburgh, Jodie C; Bach, Leon A; Colman, Peter G; Kumareswaran, Kavita; Jenkins, Alicia J; MacIsaac, Richard J; Ward, Glenn M; Grosman, Benyamin; Roy, Anirban; O'Neal, David N; Speight, Jane
2017-07-01
This qualitative study explored trial participants' experiences of four nights of in-home closed loop. Sixteen adults with type 1 diabetes, who completed a randomized crossover trial, were interviewed after four consecutive nights of closed-loop. Interviews were audio recorded, transcribed, and analyzed with a coding framework developed to identify the main themes. Participants had a mean age of 42 ± 10 years, nine were women; mean diabetes duration was 27 ± 7 years, and all were using insulin pumps. Overall, first impressions were positive. Participants found closed-loop easy to use and understand. Most experienced more stable overnight glucose levels, although for some these were similar to usual care or higher than they expected. Compared with their usual treatment, they noticed the proactive nature of the closed-loop, being able to predict trends and deliver micro amounts of insulin. Most reported technical glitches or inconveniences during one or more nights, such as transmission problems, problematic connectivity between devices, ongoing alarms despite addressing low glucose levels, and sensor inaccuracy. Remote monitoring by the trial team and their own hypoglycemic awareness contributed to feelings of trust and safety. Although rare, safety concerns were raised, related to feeling unsure whether the system would respond in time to falling glucose levels. This study provides relevant insights for implementation of closed-loop in the real world. For people with diabetes who are less familiar with technology, remote monitoring for the first few days may provide reassurance, strengthen their trust/skills, and make closed-loop an acceptable option for more people with type 1 diabetes.
Trullàs, Joan Carles; Morales-Rull, José Luís; Casado, Jesús; Freitas Ramírez, Adriana; Manzano, Luís; Formiga, Francesc
2016-07-01
Fluid overload refractory to loop diuretic therapy can complicate acute or chronic heart failure (HF) management. The Safety and Efficacy of the Combination of Loop with Thiazide-type Diuretics in Patients with Decompensated Heart Failure (CLOROTIC) trial (Clinicaltrials.gov identifier NCT01647932) will test the hypothesis that blocking distal tubule sodium reabsorption with hydrochlorothiazide can antagonize the renal adaptation to chronic loop diuretic therapy and improve diuretic resistance. CLOROTIC is a randomized, placebo-controlled, double-blind, multicenter study. Three hundred and four patients with decompensated HF will be randomly assigned to receive hydrochlorothiazide or placebo in addition to a furosemide regimen. The main inclusion criteria are: age ≥18 years, history of chronic HF (irrespective of etiology and/or ejection fraction), admission for acute decompensation, and previous treatment with an oral loop diuretic for at least 1 month before randomization. The 2 coprimary endpoints are changes in body weight and changes in patient-reported dyspnea during hospital admission. Morbidity, mortality, and safety aspects will also be addressed. CLOROTIC is the first large-scale trial to evaluate whether the addition of a thiazide diuretic (hydrochlorothiazide) to a loop diuretic (furosemide) is a safe and effective strategy for improving congestive symptoms resulting from HF. This trial will provide important information and will therefore have a major impact on treatment strategies and future trials in these patients. Copyright © 2015 Elsevier Inc. All rights reserved.
NASA Technical Reports Server (NTRS)
Yeh, H.-G.; Nguyen, T. M.
1994-01-01
Design, modeling, analysis, and simulation of a phase-locked loop (PLL) with a digital loop filter are presented in this article. A TMS320C25 digital signal processor (DSP) is used to implement this digital loop filter. In order to keep the compatibility, the main design goal was to replace the analog PLL (APLL) of the Deep-Space Transponder (DST) receiver breadboard's loop filter with a digital loop filter without changing anything else. This replacement results in a hybrid digital PLL (HDPLL). Both the original APLL and the designed HDPLL are Type I second-order systems. The real-time performance of the HDPLL and the receiver is provided and evaluated.
Control-structure interaction in precision pointing servo loops
NASA Technical Reports Server (NTRS)
Spanos, John T.
1989-01-01
The control-structure interaction problem is addressed via stability analysis of a generic linear servo loop model. With the plant described by the rigid body mode and a single elastic mode, structural flexibility is categorized into one of three types: (1) appendage, (2) in-the-loop minimum phase, and (3) in-the-loop nonminimum phase. Closing the loop with proportional-derivative (PD) control action and introducing sensor roll-off dynamics in the feedback path, stability conditions are obtained. Trade studies are conducted with modal frequency, modal participation, modal damping, loop bandwidth, and sensor bandwidth treated as free parameters. Results indicate that appendage modes are most likely to produce instability if they are near the sensor rolloff, whereas in-the-loop modes are most dangerous near the loop bandwidth. The main goal of this paper is to provide a fundamental understanding of the control-structure interaction problem so that it may benefit the design of complex spacecraft and pointing system servo loops. In this framework, the JPL Pathfinder gimbal pointer is considered as an example.
Probing the dynamics of restriction endonuclease NgoMIV-DNA interaction by single-molecule FRET.
Tutkus, Marijonas; Sasnauskas, Giedrius; Rutkauskas, Danielis
2017-12-01
Many type II restriction endonucleases require two copies of their recognition sequence for optimal activity. Concomitant binding of two DNA sites by such an enzyme produces a DNA loop. Here we exploit single-molecule Förster resonance energy transfer (smFRET) of surface-immobilized DNA fragments to study the dynamics of DNA looping induced by tetrameric endonuclease NgoMIV. We have employed a DNA fragment with two NgoMIV recognition sites and a FRET dye pair such that upon protein-induced DNA looping the dyes are brought to close proximity resulting in a FRET signal. The dynamics of DNA-NgoMIV interactions proved to be heterogeneous, with individual smFRET trajectories exhibiting broadly different average looped state durations. Distinct types of the dynamics were attributed to different types of DNA-protein complexes, mediated either by one NgoMIV tetramer simultaneously bound to two specific sites ("slow" trajectories) or by semi-specific interactions of two DNA-bound NgoMIV tetramers ("fast" trajectories), as well as to conformational heterogeneity of individual NgoMIV molecules. © 2017 Wiley Periodicals, Inc.
Charged string loops in Reissner-Nordström black hole background
NASA Astrophysics Data System (ADS)
Oteev, Tursinbay; Kološ, Martin; Stuchlík, Zdeněk
2018-03-01
We study the motion of current carrying charged string loops in the Reissner-Nordström black hole background combining the gravitational and electromagnetic field. Introducing new electromagnetic interaction between central charge and charged string loop makes the string loop equations of motion to be non-integrable even in the flat spacetime limit, but it can be governed by an effective potential even in the black hole background. We classify different types of the string loop trajectories using effective potential approach, and we compare the innermost stable string loop positions with loci of the charged particle innermost stable orbits. We examine string loop small oscillations around minima of the string loop effective potential, and we plot radial profiles of the string loop oscillation frequencies for both the radial and vertical modes. We construct charged string loop quasi-periodic oscillations model and we compare it with observed data from microquasars GRO 1655-40, XTE 1550-564, and GRS 1915+105. We also study the acceleration of current carrying string loops along the vertical axis and the string loop ejection from RN black hole neighbourhood, taking also into account the electromagnetic interaction.
NASA Technical Reports Server (NTRS)
Abercromby, Kira J.; Rapp, Jason; Bedard, Donald; Seitzer, Patrick; Cardona, Tommaso; Cowardin, Heather; Barker, Ed; Lederer, Susan
2013-01-01
Constrained Linear Least Squares model is generally more accurate than the "human-in-the-loop". However, "human-in-the-loop" can remove materials that make no sense. The speed of the model in determining a "first cut" at the material ID makes it a viable option for spectral unmixing of debris objects.
Environmental Effects on Evolution of Cluster Galaxies in a Λ-dominated Cold Dark Matter Universe
NASA Astrophysics Data System (ADS)
Okamoto, Takashi; Nagashima, Masahiro
2003-04-01
We investigate environmental effects on evolution of bright cluster galaxies (L>L*) in a Λ-dominated cold dark matter universe using a combination of dissipationless N-body simulations and a semianalytic galaxy formation model. The N-body simulations enable us to calculate orbits of galaxies in simulated clusters. Therefore, we can incorporate stripping of cold gas from galactic disks by ram pressure (RP) from the intracluster medium into our model. In this paper we study how ram pressure stripping (RPS) and small starburst induced by a minor merger affect colors, star formation rates (SFRs), and morphologies of cluster galaxies. These processes are new ingredients in our model and have not been studied sufficiently. We find that the RPS is not important for colors and SFRs of galaxies in the cluster core if the star formation timescale is properly chosen, because the star formation is sufficiently suppressed by consumption of the cold gas in the disks. Then observed color and SFR gradients can be reproduced without the RPS. The small starburst triggered by a minor merger hardly affects the SFRs and colors of the galaxies as well. We also examine whether these two processes can resolve the known problem that the hierarchical clustering models based on the major merger-driven bulge formation scenario predict too few galaxies of intermediate bulge-to-total luminosity ratio (B/T) in clusters. When the minor burst is taken into account, the intermediate B/T population is increased, and the observed morphology gradients in clusters are successfully reproduced. Without the minor burst, the RPS cannot increase the intermediate B/T population. On the other hand, when the minor burst is considered, the RPS also plays an important role in formation of the intermediate B/T galaxies. We present redshift evolution of morphological fractions predicted by our models. The predicted number ratios of the intermediate B/T galaxies to the bulge-dominated galaxies show nearly flat or slightly increasing trends with increasing redshift. We conclude that these trends are inevitable when bulges are formed through mergers. We discuss whether our results conflict with observationally suggested NS0/NE evolution in clusters, which is a decreasing function of redshift.
The Initial Conditions and Evolution of Isolated Galaxy Models: Effects of the Hot Gas Halo
NASA Astrophysics Data System (ADS)
Hwang, Jeong-Sun; Park, Changbom; Choi, Jun-Hwan
2013-02-01
We construct several Milky Way-like galaxy models containing a gas halo (as well as gaseous and stellar disks, a dark matter halo, and a stellar bulge) following either an isothermal or an NFW density profile with varying mass and initial spin. In addition, galactic winds associated with star formation are tested in some of the simulations. We evolve these isolated galaxy models using the GADGET-3 N-body/hydrodynamic simulation code, paying particular attention to the effects of the gaseous halo on the evolution. We find that the evolution of the models is strongly affected by the adopted gas halo component, particularly in the gas dissipation and the star formation activity in the disk. The model without a gas halo shows an increasing star formation rate (SFR) at the beginning of the simulation for some hundreds of millions of years and then a continuously decreasing rate to the end of the run at 3 Gyr. Whereas the SFRs in the models with a gas halo, depending on the density profile and the total mass of the gas halo, emerge to be either relatively flat throughout the simulations or increasing until the middle of the run (over a gigayear) and then decreasing to the end. The models with the more centrally concentrated NFW gas halo show overall higher SFRs than those with the isothermal gas halo of the equal mass. The gas accretion from the halo onto the disk also occurs more in the models with the NFW gas halo, however, this is shown to take place mostly in the inner part of the disk and not to contribute significantly to the star formation unless the gas halo has very high density at the central part. The rotation of a gas halo is found to make SFR lower in the model. The SFRs in the runs including galactic winds are found to be lower than those in the same runs but without winds. We conclude that the effects of a hot gaseous halo on the evolution of galaxies are generally too significant to be simply ignored. We also expect that more hydrodynamical processes in galaxies could be understood through numerical simulations employing both gas disk and gas halo components.
Marcel, V; Fernandes, K; Terrier, O; Lane, D P; Bourdon, J-C
2014-01-01
In addition to the tumor suppressor p53 protein, also termed p53α, the TP53 gene produces p53β and p53γ through alternative splicing of exons 9β and 9γ located within TP53 intron 9. Here we report that both TG003, a specific inhibitor of Cdc2-like kinases (Clk) that regulates the alternative splicing pre-mRNA pathway, and knockdown of SFRS1 increase expression of endogenous p53β and p53γ at mRNA and protein levels. Development of a TP53 intron 9 minigene shows that TG003 treatment and knockdown of SFRS1 promote inclusion of TP53 exons 9β/9γ. In a series of 85 primary breast tumors, a significant association was observed between expression of SFRS1 and α variant, supporting our experimental data. Using siRNA specifically targeting exons 9β/9γ, we demonstrate that cell growth can be driven by modulating p53β and p53γ expression in an opposite manner, depending on the cellular context. In MCF7 cells, p53β and p53γ promote apoptosis, thus inhibiting cell growth. By transient transfection, we show that p53β enhanced p53α transcriptional activity on the p21 and Bax promoters, while p53γ increased p53α transcriptional activity on the Bax promoter only. Moreover, p53β and p53γ co-immunoprecipitate with p53α only in the presence of p53-responsive promoter. Interestingly, although p53β and p53γ promote apoptosis in MCF7 cells, p53β and p53γ maintain cell growth in response to TG003 in a p53α-dependent manner. The dual activities of p53β and p53γ isoforms observed in non-treated and TG003-treated cells may result from the impact of TG003 on both expression and activities of p53 isoforms. Overall, our data suggest that p53β and p53γ regulate cellular response to modulation of alternative splicing pre-mRNA pathway by a small drug inhibitor. The development of novel drugs targeting alternative splicing process could be used as a novel therapeutic approach in human cancers. PMID:24926616
A Multi-Wavelength Census of Dust and Star Formation in Galaxies at z ~ 2
NASA Astrophysics Data System (ADS)
Shivaei, Irene; Reddy, Naveen; MOSDEF Collaboration
2017-01-01
Redshift of z ~ 2 is an important era in the history of the universe, as it contains the peak of star formation rate density and quasar activity. We study the galaxy properties during this era from two different, yet complementary, aspects: by studying formation of stars and mass assembly, and exploring the properties of galactic dust. We use a wealth of multi-wavelength data, from UV to far-IR, to obtain a complete census of obscured and unobscured star formation in galaxies. Our data consists of rest-frame optical spectra from the MOSDEF survey, rest-frame UV and optical photometric data from the 3D-HST survey, and mid- and far-IR data obtained by the Spitzer and Herschel telescopes. In the MOSDEF survey, we acquired rest-frame optical spectra of ~ 1500 galaxies with the MOSFIRE spectrograph on the Keck I telescope. MOSDEF is currently the largest survey of the rest-frame optical properties of galaxies at 1.37 ≤ z ≤ 3.80. Using the multi-wavelength data sets, we show that Hα SFRs, corrected for dust attenuation using the Hβ line, accurately trace SFRs up to ~ 300 M⊙ yr-1, when compared with panchromatic (UV-to-far-IR) SED models. Using Hα SFRs for a large sample of ~ 200 galaxies at z ~ 2, we explore the SFR-M* relation and show that the slope of this relation is shallower than previously measured. We conclude that the scatter in the SFR-M* relation is dominated by uncertainties in dust correction and cannot be used to measure the star formation stochasticity. Furthermore, we investigate the robustness of Spitzer/MIPS 24 micron flux as an SFR indicator and its variation with ISM physical parameters. We find that 24 micron flux, which at z ~ 2 traces the emission from the PAH grains, significantly depends on metallicity, such that there is a PAH deficiency in metal-poor galaxies. We demonstrate that commonly-used conversions of 24 micron flux to IR luminosity underestimate the IR luminosity of low-mass galaxies by more than a factor of 2. Our results suggest a higher specific SFR (i.e., SFR/M*) at M* ~ 109.5M⊙ and a higher IR luminosity density at z ~ 2 than previously measured. The latter corresponds to a ~ 30% increase in the SFR density.
Is There a Maximum Star Formation Rate in High-redshift Galaxies?
NASA Astrophysics Data System (ADS)
Barger, A. J.; Cowie, L. L.; Chen, C.-C.; Owen, F. N.; Wang, W.-H.; Casey, C. M.; Lee, N.; Sanders, D. B.; Williams, J. P.
2014-03-01
We use the James Clerk Maxwell Telescope's SCUBA-2 camera to image a 400 arcmin2 area surrounding the GOODS-N field. The 850 μm rms noise ranges from a value of 0.49 mJy in the central region to 3.5 mJy at the outside edge. From these data, we construct an 850 μm source catalog to 2 mJy containing 49 sources detected above the 4σ level. We use an ultradeep (11.5 μJy at 5σ) 1.4 GHz image obtained with the Karl G. Jansky Very Large Array together with observations made with the Submillimeter Array to identify counterparts to the submillimeter galaxies. For most cases of multiple radio counterparts, we can identify the correct counterpart from new and existing Submillimeter Array data. We have spectroscopic redshifts for 62% of the radio sources in the 9' radius highest sensitivity region (556/894) and 67% of the radio sources in the GOODS-N region (367/543). We supplement these with a modest number of additional photometric redshifts in the GOODS-N region (30). We measure millimetric redshifts from the radio to submillimeter flux ratios for the unidentified submillimeter sample, assuming an Arp 220 spectral energy distribution. We find a radio-flux-dependent K - z relation for the radio sources, which we use to estimate redshifts for the remaining radio sources. We determine the star formation rates (SFRs) of the submillimeter sources based on their radio powers and their submillimeter fluxes and find that they agree well. The radio data are deep enough to detect star-forming galaxies with SFRs >2000 M ⊙ yr-1 to z ~ 6. We find galaxies with SFRs up to ~6000 M ⊙ yr-1 over the redshift range z = 1.5-6, but we see evidence for a turn-down in the SFR distribution function above 2000 M ⊙ yr-1. The James Clerk Maxwell Telescope is operated by the Joint Astronomy Centre on behalf of the Science and Technology Facilities Council of the United Kingdom, the National Research Council of Canada, and (until 2013 March 31) the Netherlands Organisation for Scientific Research. The W. M. Keck Observatory is operated as a scientific partnership among the California Institute of Technology, the University of California, and NASA, and was made possible by the generous financial support of the W. M. Keck Foundation.
Insulin delivery and nocturnal glucose control in children and adolescents with type 1 diabetes.
Tauschmann, Martin; Hovorka, Roman
2017-12-01
Nocturnal glucose control remains challenging in children and adolescents with type 1 diabetes due to highly variable overnight insulin requirements. The issue may be addressed by glucose responsive insulin delivery based on real-time continuous glucose measurements. Areas covered: This review outlines recent developments of glucose responsive insulin delivery systems from a paediatric perspective. We cover threshold-based suspend application, predictive low glucose suspend, and more advanced single hormone and dual-hormone closed-loop systems. Approaches are evaluated in relation to nocturnal glucose control particularly during outpatient randomised controlled trials. Expert opinion: Significant progress translating research from controlled clinical centre settings to free-living unsupervised home studies have been achieved over the past decade. Nocturnal glycaemic control can be improved whilst reducing the risk of hypoglycaemia with closed-loop systems. Following the US regulatory approval of the first hybrid closed-loop system in non-paediatric population, large multinational closed-loop clinical trials and pivotal studies including paediatric populations are underway or in preparation to facilitate the use of closed-loop systems in clinical practice.
GOES Type III Loop Heat Pipe Life Test Results
NASA Technical Reports Server (NTRS)
Ottenstein, Laura
2011-01-01
The GOES Type III Loop Heat Pipe (LHP) was built as a life test unit for the loop heat pipes on the GOES N-Q series satellites. This propylene LHP was built by Dynatherm Corporation in 2000 and tested continuously for approximately 14 months. It was then put into storage for 3 years. Following the storage period, the LHP was tested at Swales Aerospace to verify that the loop performance hadn t changed. Most test results were consistent with earlier results. At the conclusion of testing at Swales, the LHP was transferred to NASA/GSFC for continued periodic testing. The LHP has been set up for testing in the Thermal Lab at GSFC since 2006. A group of tests consisting of start-ups, power cycles, and a heat transport limit test have been performed every six to nine months since March 2006. Tests results have shown no change in the loop performance over the five years of testing. This presentation will discuss the test hardware, test set-up, and tests performed. Test results to be presented include sample plots from individual tests, along with conductance measurements for all tests performed.
Evaluation of a Passive Heat Exchanger Based Cooling System for Fuel Cell Applications
NASA Technical Reports Server (NTRS)
Colozza, Anthony J.; Burke, Kenneth A.
2011-01-01
Fuel cell cooling is conventionally performed with an actively controlled, dedicated coolant loop that exchanges heat with a separate external cooling loop. To simplify this system the concept of directly cooling a fuel cell utilizing a coolant loop with a regenerative heat exchanger to preheat the coolant entering the fuel cell with the coolant exiting the fuel cell was analyzed. The preheating is necessary to minimize the temperature difference across the fuel cell stack. This type of coolant system would minimize the controls needed on the coolant loop and provide a mostly passive means of cooling the fuel cell. The results indicate that an operating temperature of near or greater than 70 C is achievable with a heat exchanger effectiveness of around 90 percent. Of the heat exchanger types evaluated with the same type of fluid on the hot and cold side, a counter flow type heat exchanger would be required which has the possibility of achieving the required effectiveness. The number of heat transfer units required by the heat exchanger would be around 9 or greater. Although the analysis indicates the concept is feasible, the heat exchanger design would need to be developed and optimized for a specific fuel cell operation in order to achieve the high effectiveness value required.
Xia, Ming-Hua; Xie, Shui-Hua; Wu, Jun; Zhang, Wen-Qing; Chen, Wei-Dong; He, Jian-Hua; Ding, Hao; Hu, Qian-Qin; Wang, Xiao-Peng
2016-07-25
To explore the clinical effects of the triple no loop Endobutton plate combined with Orthcord line in treating acromioclavicular dislocation of Tossy type III. Between February 2011 and September 2013, 36 patients with acromioclavicular dislocation of Tossy type III were treated with triple no loop Endobutton plate and Orthcord line. There were 21 males and 15 females, aged from 9 to 48 years old with an average of (26.41±14.05) years. Couse of disease was from 2 to 7 days in the patients. The patients had the clinical manifestations such as shoulder pain, extension limited, acromioclavicular tenderness, positive organ point sign. Clinical effects were assessed by acromioclavicular scoring system. Thirty six patients were followed up from 8 to 15 months with an average of (12.2±4.3) months. All incisions got primary healing. At the final follow up, all shoulder pain vanished, acromioclavicular joints without tenderness, negative organ point sign. No redislocation and steel plate loosening were found. According to the acromioclavicular scoring system, 31 cases obtained excellent results, 5 good. The method of triple no loop Endobutton plate combined with Orthcord line for acromioclavicular dislocation of Tossy type III has advantage of less risk and complication, good functional rehabilitation and is an ideal method.
DOE Office of Scientific and Technical Information (OSTI.GOV)
Li, Meimei; Natesan, K.; Chen, Wei-Ying
This report provides an update on the understanding of the effect of sodium exposures on microstructure and tensile properties of Grade 91 (G91) steel in support of the design and operation of G91 components in sodium-cooled fast reactors (SFRs). The report is a Level 3 deliverable in FY17 (M3AT-17AN1602018), under the Work Package AT-17AN160201, “SFR Materials Testing” performed by the Argonne National Laboratory (ANL), as part of the Advanced Reactor Technologies Program.
NASA Astrophysics Data System (ADS)
Matthee, Jorryt; Schaye, Joop
2018-05-01
Observations show that star-forming galaxies reside on a tight three-dimensional plane between mass, gas-phase metallicity and star formation rate (SFR), which can be explained by the interplay between metal-poor gas inflows, SFR and outflows. However, different metals are released on different time-scales, which may affect the slope of this relation. Here, we use central, star-forming galaxies with Mstar = 109.0 - 10.5 M⊙ from the EAGLE hydrodynamical simulation to examine three-dimensional relations between mass, SFR and chemical enrichment using absolute and relative C, N, O and Fe abundances. We show that the scatter is smaller when gas-phase α-enhancement is used rather than metallicity. A similar plane also exists for stellar α-enhancement, implying that present-day specific SFRs are correlated with long time-scale star formation histories. Between z = 0 and 1, the α-enhancement plane is even more insensitive to redshift than the plane using metallicity. However, it evolves at z > 1 due to lagging iron yields. At fixed mass, galaxies with higher SFRs have star formation histories shifted toward late times, are more α-enhanced and this α-enhancement increases with redshift as observed. These findings suggest that relations between physical properties inferred from observations may be affected by systematic variations in α-enhancements.
Past and future star formation in disk galaxies
NASA Astrophysics Data System (ADS)
Kennicutt, Robert C., Jr.; Tamblyn, Peter; Congdon, Charles E.
1994-11-01
We have combined H-alpha and UBV measurements of 210 nearby Sa-Irr galaxies with new photometric synthesis models to reanalyze the past and future star formation timescales in disks. The integrated photoionization rates and colors of disks are best fitted by a stellar initial mass function (IMF) which is enriched in massive stars by a factor of 2-3 relative to the Scalo solar neighborhood IMF. We have used published surface photometry of spiral galaxies to analyze the star formation histories of disks independent of their bulge properties. The ratio of the current star formation rate (SFR) to the average past rate increases from of order 0.01 in Sa galaxies to 1 in Sc-Irr disks. This confirms that the pronounced change in the photometric properties of spiral galaxies along the Hubble sequence is predominantly due to changes in the star formation histories of disks, and only secondarily to changes in the bulge/disk ratio. A comparison of current SFRs and gas masses of the sample yields median timescales for gas consumption of approximately 3 Gyr, in the absence of stellar recycling. However, a proper time-dependent treatment of the gas return from stars shows that recycling extends the gas lifetimes of disks by factors of 1.5-4 for typical disk parameters. Consequently the current SFRs in many (but not all) disks can be sustained for periods comparable to the Hubble time.
NASA Astrophysics Data System (ADS)
Sorba, Robert; Sawicki, Marcin
2018-05-01
We perform spatially resolved, pixel-by-pixel Spectral Energy Distribution (SED) fitting on galaxies up to z ˜ 2.5 in the Hubble eXtreme Deep Field (XDF). Comparing stellar mass estimates from spatially resolved and spatially unresolved photometry we find that unresolved masses can be systematically underestimated by factors of up to 5. The ratio of the unresolved to resolved mass measurement depends on the galaxy's specific star formation rate (sSFR): at low sSFRs the bias is small, but above sSFR ˜ 10-9.5 yr-1 the discrepancy increases rapidly such that galaxies with sSFRs ˜ 10-8 yr-1 have unresolved mass estimates of only one-half to one-fifth of the resolved value. This result indicates that stellar masses estimated from spatially unresolved data sets need to be systematically corrected, in some cases by large amounts, and we provide an analytic prescription for applying this correction. We show that correcting stellar mass measurements for this bias changes the normalization and slope of the star-forming main sequence and reduces its intrinsic width; most dramatically, correcting for the mass bias increases the stellar mass density of the Universe at high redshift and can resolve the long-standing discrepancy between the directly measured cosmic SFR density at z ≳ 1 and that inferred from stellar mass densities (`the missing mass problem').
Significant Enhancement of H2 Formation in Disk Galaxies under Strong Ram Pressure
NASA Astrophysics Data System (ADS)
Henderson, Benjamin; Bekki, Kenji
2016-05-01
We show for the first time that H2 formation on dust grains can be enhanced in disk galaxies under strong ram pressure (RP). We numerically investigate how the time evolution of H I and H2 components in disk galaxies orbiting a group/cluster of galaxies can be influenced by the hydrodynamical interaction between the gaseous components of the galaxies and the hot intracluster medium. We find that compression of H I caused by RP increases H2 formation in disk galaxies before RP rapidly strips H I, cutting off the fuel supply and causing a drop in H2 density. We also find that the level of this H2 formation enhancement in a disk galaxy under RP depends on the mass of its host cluster dark matter halo, the initial positions and velocities of the disk galaxy, and the disk inclination angle with respect to the orbital plane. We demonstrate that dust growth is a key factor in the evolution of the H I and H2 mass in disk galaxies under strong RP. We discuss how the correlation between H2 fractions and surface gas densities of disk galaxies evolves with time in the galaxies under RP. We also discuss whether galaxy-wide star formation rates (SFRs) in cluster disk galaxies can be enhanced by RP if the SFRs depend on H2 densities.
SCUSS u- BAND EMISSION AS A STAR-FORMATION-RATE INDICATOR
DOE Office of Scientific and Technical Information (OSTI.GOV)
Zhou, Zhimin; Zhou, Xu; Wu, Hong
2017-01-20
We present and analyze the possibility of using optical u- band luminosities to estimate star-formation rates (SFRs) of galaxies based on the data from the South Galactic Cap u band Sky Survey (SCUSS), which provides a deep u -band photometric survey covering about 5000 deg{sup 2} of the South Galactic Cap. Based on two samples of normal star-forming galaxies selected by the BPT diagram, we explore the correlations between u -band, H α , and IR luminosities by combing SCUSS data with the Sloan Digital Sky Survey and Wide-field Infrared Survey Explorer ( WISE ). The attenuation-corrected u -band luminositiesmore » are tightly correlated with the Balmer decrement-corrected H α luminosities with an rms scatter of ∼0.17 dex. The IR-corrected u luminosities are derived based on the correlations between the attenuation of u- band luminosities and WISE 12 (or 22) μ m luminosities, and then calibrated with the Balmer-corrected H α luminosities. The systematic residuals of these calibrations are tested against the physical properties over the ranges covered by our sample objects. We find that the best-fitting nonlinear relations are better than the linear ones and recommended to be applied in the measurement of SFRs. The systematic deviations mainly come from the pollution of old stellar population and the effect of dust extinction; therefore, a more detailed analysis is needed in future work.« less
Scuss u-Band Emission as a Star-Formation-Rate Indicator
NASA Astrophysics Data System (ADS)
Zhou, Zhimin; Zhou, Xu; Wu, Hong; Fan, Xiao-Hui; Fan, Zhou; Jiang, Zhao-Ji; Jing, Yi-Peng; Li, Cheng; Lesser, Michael; Jiang, Lin-Hua; Ma, Jun; Nie, Jun-Dan; Shen, Shi-Yin; Wang, Jia-Li; Wu, Zhen-Yu; Zhang, Tian-Meng; Zou, Hu
2017-01-01
We present and analyze the possibility of using optical u-band luminosities to estimate star-formation rates (SFRs) of galaxies based on the data from the South Galactic Cap u band Sky Survey (SCUSS), which provides a deep u-band photometric survey covering about 5000 deg2 of the South Galactic Cap. Based on two samples of normal star-forming galaxies selected by the BPT diagram, we explore the correlations between u-band, Hα, and IR luminosities by combing SCUSS data with the Sloan Digital Sky Survey and Wide-field Infrared Survey Explorer (WISE). The attenuation-corrected u-band luminosities are tightly correlated with the Balmer decrement-corrected Hα luminosities with an rms scatter of ˜0.17 dex. The IR-corrected u luminosities are derived based on the correlations between the attenuation of u-band luminosities and WISE 12 (or 22) μm luminosities, and then calibrated with the Balmer-corrected Hα luminosities. The systematic residuals of these calibrations are tested against the physical properties over the ranges covered by our sample objects. We find that the best-fitting nonlinear relations are better than the linear ones and recommended to be applied in the measurement of SFRs. The systematic deviations mainly come from the pollution of old stellar population and the effect of dust extinction; therefore, a more detailed analysis is needed in future work.
The pathophysiology of glossal pain in patients with iron deficiency and anemia.
Osaki, T; Ueta, E; Arisawa, K; Kitamura, Y; Matsugi, N
1999-11-01
It is well known that prolonged anemia causes atrophy of tongue papillae, glossal pain, and dysphagia, but it is uncertain whether iron (Fe) deficiency induces glossal pain without any objective manifestation. To resolve this matter, the relationship between Fe deficiency and glossal pain was examined. Eighteen patients with Fe deficiency and 7 anemic patients manifesting spontaneous irritation or pain of the tongue without any objective abnormalities participated in this study. To ascertain the cause of glossal pain and the oral pathophysiology in Fe deficiency and anemia, peripheral blood was examined and the glossal pain threshold and salivary flow rates (SFRs) were estimated along with Candida albicans cell culture tests. Compared with patients with Fe deficiency, those with anemia had a longer history of tongue pain. In patients with anemia, painful areas of the tongue were more numerous than in patients with Fe deficiency. Pain thresholds were decreased in the painful portions, and both nonstimulated and stimulated SFRs were suppressed. Each patient was treated with oral Fe; within 2 months, most patients exhibited increased serum ferritin level (P< 0.02, paired t-test), pain threshold (P < 0.05) and salivation (P < 0.05) and glossal pain subsided. Fe deficiency causes glossal pain and the degree of glossal pain increases as Fe deficiency advances to anemia, manifesting hyposalivation and abnormalities of glossal papillae.
NASA Astrophysics Data System (ADS)
Kourghi, Mohamad; De Ieso, Michael L.; Nourmohammadi, Saeed; Pei, Jinxin V.; Yool, Andrea J.
2018-04-01
Aquaporins are integral proteins that facilitate the transmembrane transport of water and small solutes. In addition to enabling water flux, mammalian Aquaporin-1 (AQP1) channels activated by cyclic GMP can carry non-selective monovalent cation currents, selectively blocked by arylsulfonamide compounds AqB007 (IC50 170 µM) and AqB011 (IC50 14 µM). In silico models suggested that ligand docking might involve the cytoplasmic loop D (between AQP1 transmembrane domains 4 and 5), but the predicted site of interaction remained to be tested. Work here shows that mutagenesis of two conserved arginine residues in loop D slowed the activation of the AQP1 ion conductance and impaired the sensitivity of the channel to block by AqB011. Substitution of residues in loop D with proline showed effects on ion conductance amplitude that varied with position, suggesting that the structural conformation of loop D is important for AQP1 channel gating. Human AQP1 wild type, AQP1 mutant channels with alanines substituted for two arginines (R159A+R160A), and mutants with proline substituted for single residues threonine (T157P), aspartate (D158P), arginine (R159P, R160P) or glycine (G165P) were expressed in Xenopus laevis oocytes. Conductance responses were analyzed by two-electrode voltage clamp. Optical osmotic swelling assays and confocal microscopy were used to confirm mutant and wild type AQP1-expressing oocytes were expressed in the plasma membrane. After application of membrane-permeable cGMP, R159A+R160A channels had a significantly slower rate of activation as compared with wild type, consistent with impaired gating. AQP1 R159A+R160A channels showed no significant block by AqB011 at 50 µM, in contrast to the wild type channel which was blocked effectively. T157P, D158P and R160P mutations had impaired activation compared to wild type; R159P showed no significant effect; and G165P appeared to augment the conductance amplitude. These findings provide evidence for the role of the loop D as a gating domain for AQP1 ion channels, and identify the likely site of interaction of AqB011 in the proximal loop D sequence.
A single-loop optimization method for reliability analysis with second order uncertainty
NASA Astrophysics Data System (ADS)
Xie, Shaojun; Pan, Baisong; Du, Xiaoping
2015-08-01
Reliability analysis may involve random variables and interval variables. In addition, some of the random variables may have interval distribution parameters owing to limited information. This kind of uncertainty is called second order uncertainty. This article develops an efficient reliability method for problems involving the three aforementioned types of uncertain input variables. The analysis produces the maximum and minimum reliability and is computationally demanding because two loops are needed: a reliability analysis loop with respect to random variables and an interval analysis loop for extreme responses with respect to interval variables. The first order reliability method and nonlinear optimization are used for the two loops, respectively. For computational efficiency, the two loops are combined into a single loop by treating the Karush-Kuhn-Tucker (KKT) optimal conditions of the interval analysis as constraints. Three examples are presented to demonstrate the proposed method.
Polar phase of superfluid 3He: Dirac lines in the parameter and momentum spaces
NASA Astrophysics Data System (ADS)
Volovik, G. E.
2018-03-01
The time reversal symmetric polar phase of the spin-triplet superfluid 3He has two types of Dirac nodal lines. In addition to the Dirac loop in the spectrum of the fermionic Bogoliubov quasiparticles in the momentum space (p x , p y , p z ), the spectrum of bosons (magnons) has Dirac loop in the 3D space of parameters-the components of magnetic field (H x , H y , H z ). The bosonic Dirac system lives on the border between the type-I and type-II.
Leptoquark mechanism of neutrino masses within the grand unification framework
NASA Astrophysics Data System (ADS)
Doršner, Ilja; Fajfer, Svjetlana; Košnik, Nejc
2017-06-01
We demonstrate the viability of the one-loop neutrino mass mechanism within the framework of grand unification when the loop particles comprise scalar leptoquarks (LQs) and quarks of the matching electric charge. This mechanism can be implemented in both supersymmetric and non-supersymmetric models and requires the presence of at least one LQ pair. The appropriate pairs for the neutrino mass generation via the up-type and down-type quark loops are S_3-R_2 and S_{1, 3}-\\tilde{R}_2, respectively. We consider two distinct regimes for the LQ masses in our analysis. The first regime calls for very heavy LQs in the loop. It can be naturally realized with the S_{1, 3}-\\tilde{R}_2 scenarios when the LQ masses are roughly between 10^{12} and 5 × 10^{13} GeV. These lower and upper bounds originate from experimental limits on partial proton decay lifetimes and perturbativity constraints, respectively. Second regime corresponds to the collider accessible LQs in the neutrino mass loop. That option is viable for the S_3-\\tilde{R}_2 scenario in the models of unification that we discuss. If one furthermore assumes the presence of the type II see-saw mechanism there is an additional contribution from the S_3-R_2 scenario that needs to be taken into account beside the type II see-saw contribution itself. We provide a complete list of renormalizable operators that yield necessary mixing of all aforementioned LQ pairs using the language of SU(5). We furthermore discuss several possible embeddings of this mechanism in SU(5) and SO(10) gauge groups.
Zhang, Yan; Wang, Lei; Schultz, Peter G.; Wilson, Ian A.
2005-01-01
The Methanococcus jannaschii tRNATyr/TyrRS pair has been engineered to incorporate unnatural amino acids into proteins in E. coli. To reveal the structural basis for the altered specificity of mutant TyrRS for O-methyl-l-tyrosine (OMeTyr), the crystal structures for the apo wild-type and mutant M. jannaschii TyrRS were determined at 2.66 and 3.0 Å, respectively, for comparison with the published structure of TyrRS complexed with tRNATyr and substrate tyrosine. A large conformational change was found for the anticodon recognition loop 257–263 of wild-type TyrRS upon tRNA binding in order to facilitate recognition of G34 of the anticodon loop through π-stacking and hydrogen bonding interactions. Loop 133–143, which is close to the tRNA acceptor stem-binding site, also appears to be stabilized by interaction with the tRNATyr. Binding of the substrate tyrosine results in subtle and cooperative movements of the side chains within the tyrosine-binding pocket. In the OMeTyr-specific mutant synthetase structure, the signature motif KMSKS loop and acceptor stem-binding loop 133–143 were surprisingly ordered in the absence of bound ATP and tRNA. The active-site mutations result in altered hydrogen bonding and steric interactions which favor binding of OMeTyr over l-tyrosine. The structure of the mutant and wild-type TyrRS now provide a basis for generating new active-site libraries to evolve synthetases specific for other unnatural amino acids. PMID:15840835
Imaging spectroscopy of type U and J solar radio bursts with LOFAR
NASA Astrophysics Data System (ADS)
Reid, Hamish A. S.; Kontar, Eduard P.
2017-10-01
Context. Radio U-bursts and J-bursts are signatures of electron beams propagating along magnetic loops confined to the corona. The more commonly observed type III radio bursts are signatures of electron beams propagating along magnetic loops that extend into interplanetary space. Given the prevalence of solar magnetic flux to be closed in the corona, why type III bursts are more frequently observed than U-bursts or J-bursts is an outstanding question. Aims: We use Low-Frequency Array (LOFAR) imaging spectroscopy between 30-80 MHz of low-frequency U-bursts and J-bursts, for the first time, to understand why electron beams travelling along coronal loops produce radio emission less often. Radio burst observations provide information not only about the exciting electron beams but also about the structure of large coronal loops with densities that are too low for standard extreme ultraviolet (EUV) or X-ray analysis. Methods: We analysed LOFAR images of a sequence of two J-bursts and one U-burst. The different radio source positions were used to model the spatial structure of the guiding magnetic flux tube and then deduce the energy range of the exciting electron beams without the assumption of a standard density model. We also estimated the electron density along the magnetic flux rope and compared it to coronal models. Results: The radio sources infer a magnetic loop that is 1 solar radius in altitude with the highest frequency sources starting around 0.6 solar radii. Electron velocities were found between 0.13 c and 0.24 c with the front of the electron beam travelling faster than the back of the electron beam. The velocities correspond to energy ranges within the beam from 0.7-11 keV to 0.7-43 keV. The density along the loop is higher than typical coronal density models and the density gradient is smaller. Conclusions: We found that a more restrictive range of accelerated beam and background plasma parameters can result in U-bursts or J-bursts, causing type III bursts to be more frequently observed. The large instability distances required before Langmuir waves are produced by some electron beams, and the small magnitude of the background density gradients makes closed loops less facilitative for radio emission than loops that extend into interplanetary space.
Bkaily, Ghassan; El-Bizri, Nesrine; Bui, Michel; Sukarieh, Rami; Jacques, Danielle; Fu, Michael L X
2003-03-01
The effects of methoxamine, a selective alpha1-adrenergic receptor agonist, and the autoantibody directed against the second extracellular loop of alpha1-adrenoceptors were studied on intracellular free Ca2+ levels using confocal microscopy and ionic currents using the whole-cell patch clamp technique in single cells of 10-day-old embryonic chick and 20-week-old fetal human hearts. We observed that like methoxamine, the autoantibody directed against the second extracellular loop of alpha1-adrenoreceptors significantly increased the L-type calcium current (I(Ca(L))) but had no effect on the T-type calcium current (I(Ca(T))), the delayed outward potassium current, or the fast sodium current. This effect of the autoantibody was prevented by a prestimulation of the receptors with methoxamine and vice versa. Moreover, treating the cells with prazosin, a selective alpha1-adrenergic receptor antagonist blocked the methoxamine and the autoantibody-induced increase in I(Ca(L)), respectively. In absence of prazosin, both methoxamine and the autoantibody showed a substantial enhancement in the frequency of cell contraction and that of the concomitant cytosolic and nuclear free Ca2+ variations. The subsequent addition of nifedipine, a specific L-type Ca2+ channel blocker, reversed not only the methoxamine or the autoantibody-induced effect but also completely abolished cell contraction. These results demonstrated that functional alpha1-adrenoceptors exist in both 10-day-old embryonic chick and 20-week-old human fetal hearts and that the autoantibody directed against the second extracellular loop of this type of receptors plays an important role in stimulating their activity via activation of L-type calcium channels. This loop seems to have a functional significance by being the target of alpha1-receptor agonists like methoxamine.
Chavda, S C; Griffin, P; Han-Liu, Z; Keys, B; Vekony, M A; Cann, A J
1994-11-01
We and others have identified the major determinant of cell tropism in human immunodeficiency virus type 1 (HIV-1) as the V3 loop of glycoprotein gp120. We have conducted a detailed study of two molecularly cloned isolates of HIV-1, HIVJR-CSF and HIVNL4-3, that differ in their tropism for immortalized CD4+ cell lines, by constructing a series of site-directed mutations within the V3 loop of HIVJR-CSF based on the sequence of HIVNL4-3. The phenotypes of these mutants fall into two classes, those which are viable and those which are not. A spontaneous mutant with significantly altered growth properties was also recovered and found to have an additional single amino acid change in the V3 loop sequence. The carboxy-terminal beta-strand part of the V3 loop is the major determinant of cell tropism. However, the results presented here indicate that the functional role of the V3 loop sequences can only be interpreted properly in the context of the original gp120 backbone from which they were derived. These findings show that over-simplistic interpretation of sequence data derived from unknown mixtures of HIV variants in infected persons may be highly misleading.
Structural consequences of cutting a binding loop: two circularly permuted variants of streptavidin
DOE Office of Scientific and Technical Information (OSTI.GOV)
Le Trong, Isolde; University of Washington, Box 357742, Seattle, WA 98195-7742; Chu, Vano
2013-06-01
The crystal structures of two circularly permuted streptavidins probe the role of a flexible loop in the tight binding of biotin. Molecular-dynamics calculations for one of the mutants suggests that increased fluctuations in a hydrogen bond between the protein and biotin are associated with cleavage of the binding loop. Circular permutation of streptavidin was carried out in order to investigate the role of a main-chain amide in stabilizing the high-affinity complex of the protein and biotin. Mutant proteins CP49/48 and CP50/49 were constructed to place new N-termini at residues 49 and 50 in a flexible loop involved in stabilizing themore » biotin complex. Crystal structures of the two mutants show that half of each loop closes over the binding site, as observed in wild-type streptavidin, while the other half adopts the open conformation found in the unliganded state. The structures are consistent with kinetic and thermodynamic data and indicate that the loop plays a role in enthalpic stabilization of the bound state via the Asn49 amide–biotin hydrogen bond. In wild-type streptavidin, the entropic penalties of immobilizing a flexible portion of the protein to enhance binding are kept to a manageable level by using a contiguous loop of medium length (six residues) which is already constrained by its anchorage to strands of the β-barrel protein. A molecular-dynamics simulation for CP50/49 shows that cleavage of the binding loop results in increased structural fluctuations for Ser45 and that these fluctuations destabilize the streptavidin–biotin complex.« less
Graph Structured Program Evolution: Evolution of Loop Structures
NASA Astrophysics Data System (ADS)
Shirakawa, Shinichi; Nagao, Tomoharu
Recently, numerous automatic programming techniques have been developed and applied in various fields. A typical example is genetic programming (GP), and various extensions and representations of GP have been proposed thus far. Complex programs and hand-written programs, however, may contain several loops and handle multiple data types. In this chapter, we propose a new method called Graph Structured Program Evolution (GRAPE). The representation of GRAPE is a graph structure; therefore, it can represent branches and loops using this structure. Each programis constructed as an arbitrary directed graph of nodes and a data set. The GRAPE program handles multiple data types using the data set for each type, and the genotype of GRAPE takes the form of a linear string of integers. We apply GRAPE to three test problems, factorial, exponentiation, and list sorting, and demonstrate that the optimum solution in each problem is obtained by the GRAPE system.
Massless spectra and gauge couplings at one-loop on non-factorisable toroidal orientifolds
NASA Astrophysics Data System (ADS)
Berasaluce-González, Mikel; Honecker, Gabriele; Seifert, Alexander
2018-01-01
So-called 'non-factorisable' toroidal orbifolds can be rewritten in a factorised form as a product of three two-tori by imposing an additional shift symmetry. This finding of Blaszczyk et al. [1] provides a new avenue to Conformal Field Theory methods, by which the vector-like massless matter spectrum - and thereby the type of gauge group enhancement on orientifold invariant fractional D6-branes - and the one-loop corrections to the gauge couplings in Type IIA orientifold theories can be computed in addition to the well-established chiral matter spectrum derived from topological intersection numbers among three-cycles. We demonstrate this framework for the Z4 × ΩR orientifolds on the A3 ×A1 ×B2-type torus. As observed before for factorisable backgrounds, also here the one-loop correction can drive the gauge groups to stronger coupling as demonstrated by means of a four-generation Pati-Salam example.
Modelling and experimental performance analysis of solar-assisted ground source heat pump system
NASA Astrophysics Data System (ADS)
Esen, Hikmet; Esen, Mehmet; Ozsolak, Onur
2017-01-01
In this study, slinky (the slinky-loop configuration is also known as the coiled loop or spiral loop of flexible plastic pipe)type ground heat exchanger (GHE) was established for a solar-assisted ground source heat pump system. System modelling is performed with the data obtained from the experiment. Artificial neural network (ANN) and adaptive neuro-fuzzy inference system (ANFIS) are used in modelling. The slinky pipes have been laid horizontally and vertically in a ditch. The system coefficient of performance (COPsys) and the heat pump coefficient of performance (COPhp) have been calculated as 2.88 and 3.55, respectively, at horizontal slinky-type GHE, while COPsys and COPhp were calculated as 2.34 and 2.91, respectively, at vertical slinky-type GHE. The obtained results showed that the ANFIS is more successful than that of ANN for forecasting performance of a solar ground source heat pump system.
Right- and left-loop short shRNAs have distinct and unusual mechanisms of gene silencing
Dallas, Anne; Ilves, Heini; Ge, Qing; Kumar, Pavan; Shorenstein, Joshua; Kazakov, Sergei A.; Cuellar, Trinna L.; McManus, Michael T.; Behlke, Mark A.; Johnston, Brian H.
2012-01-01
Small hairpin RNAs (shRNAs) having duplex lengths of 25–29 bp are normally processed by Dicer into short interfering RNAs (siRNAs) before incorporation into the RNA-induced silencing complex (RISC). However, shRNAs of ≤19 bp [short shRNAs (sshRNAs)] are too short for Dicer to excise their loops, raising questions about their mechanism of action. sshRNAs are designated as L-type or R-type according to whether the loop is positioned 3′ or 5′ to the guide sequence, respectively. Using nucleotide modifications that inhibit RNA cleavage, we show that R- but not L-sshRNAs require loop cleavage for optimum activity. Passenger-arm slicing was found to be important for optimal functioning of L-sshRNAs but much less important for R-sshRNAs that have a cleavable loop. R-sshRNAs could be immunoprecipitated by antibodies to Argonaute-1 (Ago1); complexes with Ago1 contained both intact and loop-cleaved sshRNAs. In contrast, L-sshRNAs were immunoprecipitated with either Ago1 or Ago2 and were predominantly sliced in the passenger arm of the hairpin. However, ‘pre-sliced’ L-sshRNAs were inactive. We conclude that active L-sshRNAs depend on slicing of the passenger arm to facilitate opening of the duplex, whereas R-sshRNAs primarily act via loop cleavage to generate a 5′-phosphate at the 5′-end of the guide strand. PMID:22810205
Run-time scheduling and execution of loops on message passing machines
NASA Technical Reports Server (NTRS)
Crowley, Kay; Saltz, Joel; Mirchandaney, Ravi; Berryman, Harry
1989-01-01
Sparse system solvers and general purpose codes for solving partial differential equations are examples of the many types of problems whose irregularity can result in poor performance on distributed memory machines. Often, the data structures used in these problems are very flexible. Crucial details concerning loop dependences are encoded in these structures rather than being explicitly represented in the program. Good methods for parallelizing and partitioning these types of problems require assignment of computations in rather arbitrary ways. Naive implementations of programs on distributed memory machines requiring general loop partitions can be extremely inefficient. Instead, the scheduling mechanism needs to capture the data reference patterns of the loops in order to partition the problem. First, the indices assigned to each processor must be locally numbered. Next, it is necessary to precompute what information is needed by each processor at various points in the computation. The precomputed information is then used to generate an execution template designed to carry out the computation, communication, and partitioning of data, in an optimized manner. The design is presented for a general preprocessor and schedule executer, the structures of which do not vary, even though the details of the computation and of the type of information are problem dependent.
Run-time scheduling and execution of loops on message passing machines
NASA Technical Reports Server (NTRS)
Saltz, Joel; Crowley, Kathleen; Mirchandaney, Ravi; Berryman, Harry
1990-01-01
Sparse system solvers and general purpose codes for solving partial differential equations are examples of the many types of problems whose irregularity can result in poor performance on distributed memory machines. Often, the data structures used in these problems are very flexible. Crucial details concerning loop dependences are encoded in these structures rather than being explicitly represented in the program. Good methods for parallelizing and partitioning these types of problems require assignment of computations in rather arbitrary ways. Naive implementations of programs on distributed memory machines requiring general loop partitions can be extremely inefficient. Instead, the scheduling mechanism needs to capture the data reference patterns of the loops in order to partition the problem. First, the indices assigned to each processor must be locally numbered. Next, it is necessary to precompute what information is needed by each processor at various points in the computation. The precomputed information is then used to generate an execution template designed to carry out the computation, communication, and partitioning of data, in an optimized manner. The design is presented for a general preprocessor and schedule executer, the structures of which do not vary, even though the details of the computation and of the type of information are problem dependent.
Quantum Loop Expansion to High Orders, Extended Borel Summation, and Comparison with Exact Results
NASA Astrophysics Data System (ADS)
Noreen, Amna; Olaussen, Kåre
2013-07-01
We compare predictions of the quantum loop expansion to (essentially) infinite orders with (essentially) exact results in a simple quantum mechanical model. We find that there are exponentially small corrections to the loop expansion, which cannot be explained by any obvious “instanton”-type corrections. It is not the mathematical occurrence of exponential corrections but their seeming lack of any physical origin which we find surprising and puzzling.
FY15 Status Report on NEAMS Neutronics Activities
DOE Office of Scientific and Technical Information (OSTI.GOV)
Lee, C. H.; Shemon, E. R.; Smith, M. A.
2015-09-30
This report summarizes the current status of NEAMS activities in FY2015. The tasks this year are (1) to improve solution methods for steady-state and transient conditions, (2) to develop features and user friendliness to increase the usability and applicability of the code, (3) to improve and verify the multigroup cross section generation scheme, (4) to perform verification and validation tests of the code using SFRs and thermal reactor cores, and (5) to support early users of PROTEUS and update the user manuals.
Dislocation loops in ultra-high purity Fe(Cr) alloys after 7.2 MeV proton irradiation
NASA Astrophysics Data System (ADS)
Chen, J.; Duval, F.; Jung, P.; Schäublin, R.; Gao, N.; Barthe, M. F.
2018-05-01
Ultra-high purity Fe(Cr) alloys (from 0 wt% Cr to 14 wt% Cr) were 3D homogeneously irradiated by 0-7.2 MeV protons to 0.3 dpa at nominal temperatures from 270 °C to 500 °C. Microstructural changes were observed by transmission electron microscopy (TEM). The results showed that evolution of dislocation loops depends on the Cr content. Below 300 °C, large ½ a0 <111> loops are dominating. Above 300 °C, a0 <100> loops with a habit plane {100} appear. Loop sizes of both types are more or less the same. At temperatures from 310 °C to 400 °C, a0 <100> loops form clusters with the same {100} habit plane as the one of the loops forming them. This indicates that <100> loops of the same variant start gliding under mutual elastic interaction. At 500 °C, dislocation loops form disc shaped clusters about 1000 nm in diameter and sitting on {111} and/or {100} planes in the pure Fe samples. Based on these observations a quantitative analysis of the dislocation loops configurations and their temperature dependence is made, leading to an understanding of the basic mechanisms of formation of these loops.
O'Sullivan, Valerie J.; Barrette-Ng, Isabelle; Hommema, Eric; Hermanson, Greg T.; Schofield, Mark; Wu, Sau-Ching; Honetschlaeger, Claudia; Ng, Kenneth K.-S.; Wong, Sui-Lam
2012-01-01
A novel form of tetrameric streptavidin has been engineered to have reversible biotin binding capability. In wild-type streptavidin, loop3–4 functions as a lid for the entry and exit of biotin. When biotin is bound, interactions between biotin and key residues in loop3–4 keep this lid in the closed state. In the engineered mutein, a second biotin exit door is created by changing the amino acid sequence of loop7–8. This door is mobile even in the presence of the bound biotin and can facilitate the release of biotin from the mutein. Since loop7–8 is involved in subunit interactions, alteration of this loop in the engineered mutein results in an 11° rotation between the two dimers in reference to wild-type streptavidin. The tetrameric state of the engineered mutein is stabilized by a H127C mutation, which leads to the formation of inter-subunit disulfide bonds. The biotin binding kinetic parameters (koff of 4.28×10−4 s−1 and Kd of 1.9×10−8 M) make this engineered mutein a superb affinity agent for the purification of biotinylated biomolecules. Affinity matrices can be regenerated using gentle procedures, and regenerated matrices can be reused at least ten times without any observable reduction in binding capacity. With the combination of both the engineered mutein and wild-type streptavidin, biotinylated biomolecules can easily be affinity purified to high purity and immobilized to desirable platforms without any leakage concerns. Other potential biotechnological applications, such as development of an automated high-throughput protein purification system, are feasible. PMID:22536357
Li, L; Falzone, C J; Wright, P E; Benkovic, S J
1992-09-01
The function of a highly mobile loop in Escherichia coli dihydrofolate reductase was studied by constructing a mutant (DL1) using cassette mutagenesis that had four residues deleted in the middle section of the loop (Met16-Ala19) and a glycine inserted to seal the gap. This part of the loop involves residues 16-20 and is disordered in the X-ray crystal structures of the apoprotein and the NADP+ binary complex but forms a hairpin turn that folds over the nicotinamide moiety of NADP+ and the pteridine moiety of folate in the ternary complex [Bystroff, C., & Kraut, J. (1991) Biochemistry 30, 2227-2239]. The steady-state and pre-steady-state kinetics and two-dimensional 1H NMR spectra were analyzed and compared to the wild-type protein. The kinetics on the DL1 mutant enzyme show that the KM value for NADPH (5.3 microM), the KM for dihydrofolate (2 microM), the rate constant for the release of the product tetrahydrofolate (10.3 s-1), and the intrinsic pKa value (6.2) are similar to those exhibited by the wild-type enzyme. However, the hydride-transfer rate declines markedly from the wild-type value of 950 s-1 to 1.7 s-1 for the DL1 mutant and when taken with data for substrate binding indicates that the loop contributes to substrate flux by a factor of 3.5 x 10(4). Thus, the mobility of loop I may provide a mechanism of recruiting hydrophobic residues which can properly align the nicotinamide and pteridine rings for the hydride-transfer process (a form of transition-state stabilization).(ABSTRACT TRUNCATED AT 250 WORDS)
Kolchinsky, P; Kiprilov, E; Bartley, P; Rubinstein, R; Sodroski, J
2001-04-01
The gp120 envelope glycoprotein of primary human immunodeficiency virus type 1 (HIV-1) promotes virus entry by sequentially binding CD4 and the CCR5 chemokine receptor on the target cell. Previously, we adapted a primary HIV-1 isolate, ADA, to replicate in CD4-negative canine cells expressing human CCR5. The gp120 changes responsible for CD4-independent replication were limited to the V2 loop-V1/V2 stem. Here we show that elimination of a single glycosylation site at asparagine 197 in the V1/V2 stem is sufficient for CD4-independent gp120 binding to CCR5 and for HIV-1 entry into CD4-negative cells expressing CCR5. Deletion of the V1/V2 loops also allowed CD4-independent viral entry and gp120 binding to CCR5. The binding of the wild-type ADA gp120 to CCR5 was less dependent upon CD4 at 4 degrees C than at 37 degrees C. In the absence of the V1/V2 loops, neither removal of the N-linked carbohydrate at asparagine 197 nor lowering of the temperature increased the CD4-independent phenotypes. A CCR5-binding conformation of gp120, achieved by CD4 interaction or by modification of temperature, glycosylation, or variable loops, was preferentially recognized by the monoclonal antibody 48d. These results suggest that the CCR5-binding region of gp120 is occluded by the V1/V2 variable loops, the position of which can be modulated by temperature, CD4 binding, or an N-linked glycan in the V1/V2 stem.
Tauschmann, Martin; Allen, Janet M; Wilinska, Malgorzata E; Thabit, Hood; Acerini, Carlo L; Dunger, David B; Hovorka, Roman
2016-11-01
This study evaluated the feasibility, safety, and efficacy of day-and-night hybrid closed-loop insulin delivery in adolescents with type 1 diabetes under free-living conditions. In an open-label randomized crossover study, 12 suboptimally controlled adolescents on insulin pump therapy (mean ± SD age 14.6 ± 3.1 years; HbA 1c 69 ± 8 mmol/mol [8.5 ± 0.7%]; duration of diabetes 7.8 ± 3.5 years) underwent two 21-day periods in which hybrid closed-loop insulin delivery was compared with sensor-augmented insulin pump therapy in random order. During the closed-loop intervention, a model predictive algorithm automatically directed insulin delivery between meals and overnight. Participants used a bolus calculator to administer prandial boluses. The proportion of time that sensor glucose was in the target range (3.9-10 mmol/L; primary end point) was increased during the closed-loop intervention compared with sensor-augmented insulin pump therapy by 18.8 ± 9.8 percentage points (mean ± SD; P < 0.001), the mean sensor glucose level was reduced by 1.8 ± 1.3 mmol/L (P = 0.001), and the time spent above target was reduced by 19.3 ± 11.3 percentage points (P < 0.001). The time spent with sensor glucose levels below 3.9 mmol/L was low and comparable between interventions (median difference 0.4 [interquartile range -2.2 to 1.3] percentage points; P = 0.33). Improved glucose control during closed-loop was associated with increased variability of basal insulin delivery (P < 0.001) and an increase in the total daily insulin dose (53.5 [39.5-72.1] vs. 51.5 [37.6-64.3] units/day; P = 0.006). Participants expressed positive attitudes and experience with the closed-loop system. Free-living home use of day-and-night closed-loop in suboptimally controlled adolescents with type 1 diabetes is safe, feasible, and improves glucose control without increasing the risk of hypoglycemia. Larger and longer studies are warranted. © 2016 by the American Diabetes Association.
Numerical Analysis of Combined Well and Open-Closed Loops Geothermal (CWG) Systems
NASA Astrophysics Data System (ADS)
Park, Yu-Chul
2016-04-01
Open-loop geothermal heat pump (GHP) system and closed-loop heat pump systems have been used in Korea to reduce emission of greenhouse gases such as carbon dioxide (CO2). The GHP systems have the pros and cons, for example, the open-loop GHP system is good energy-efficient and the closed-loop GHP system requires minimum maintenance costs. The open-loop GHP system can be used practically only with large amount of groundwater supply. The closed-loop GHP system can be used with high costs of initial installation. The performance and efficiency of the GHP system depend on the characteristics of the GHP system itself in addition to the geologic conditions. To overcome the cons of open-loop or closed-loop GHP system, the combined well and open-closed loops geothermal (CWG) system was designed. The open-loop GHP system is surrounded with closed-loop GHP systems in the CWG system. The geothermal energy in closed-loop GHP systems is supplied by the groundwater pumped by the open-loop GHP system. In this study, 2 different types of the CWG systems (small aperture hybrid CWG system and large aperture CWG system) are estimated using numerical simulation models in the aspect of energy efficiency. This work was supported by the New & Renewable Energy Core Technology Program of the Korea Institute of Energy Technology Evaluation and Planning (KETEP), granted financial resource from the Ministry of Trade, Industry & Energy, Republic of Korea. (No.20153030111120).
Contribution of the mu loop to the structure and function of rat glutathione transferase M1-1
Hearne, Jennifer L.; Colman, Roberta F.
2006-01-01
The “mu loop,” an 11-residue loop spanning amino acid residues 33–43, is a characteristic structural feature of the mu class of glutathione transferases. To assess the contribution of the mu loop to the structure and function of rat GST M1-1, amino acid residues 35–44 (35GDAPDYDRSQ44) were excised by deletion mutagenesis, resulting in the “Deletion Enzyme.” Kinetic studies reveal that the Km values of the Deletion Enzyme are markedly increased compared with those of the wild-type enzyme: 32-fold for 1-chloro-2,4-dinitrobenzene, 99-fold for glutathione, and 880-fold for monobromobimane, while the Vmax value for each substrate is increased only modestly. Results from experiments probing the structure of the Deletion Enzyme, in comparison with that of the wild-type enzyme, suggest that the secondary and quaternary structures have not been appreciably perturbed. Thermostability studies indicate that the Deletion Enzyme is as stable as the wild-type enzyme at 4°C and 10°C, but it rapidly loses activity at 25°C, unlike the wild-type enzyme. In the temperature range of 4°C through 25°C, the loss of activity of the Deletion Enzyme is not the result of a change in its structure, as determined by circular dichroism spectroscopy and sedimentation equilibrium centrifugation. Collectively, these results indicate that the mu loop is not essential for GST M1-1 to maintain its structure nor is it required for the enzyme to retain some catalytic activity. However, it is an important determinant of the enzyme's affinity for its substrates. PMID:16672236
All-loop Mondrian diagrammatics and 4-particle amplituhedron
NASA Astrophysics Data System (ADS)
An, Yang; Li, Yi; Li, Zhinan; Rao, Junjie
2018-06-01
Based on 1712.09990 which handles the 4-particle amplituhedron at 3-loop, we have found an extremely simple pattern, yet far more non-trivial than one might naturally expect: the all-loop Mondrian diagrammatics. By further simplifying and rephrasing the key relation of positivity in the amplituhedron setting, remarkably, we find a completeness relation unifying all diagrams of the Mondrian types for the 4-particle integrand of planar N = 4 SYM to all loop orders, each of which can be mapped to a simple product following a few plain rules designed for this relation. The explicit examples we investigate span from 3-loop to 7-loop order, and based on them, we classify the basic patterns of Mondrian diagrams into four types: the ladder, cross, brick-wall and spiral patterns. Interestingly, for some special combinations of ordered subspaces (a concept defined in the previous work), we find failed exceptions of the completeness relation which are called "anomalies", nevertheless, they substantially give hints on the all-loop recursive proof of this relation. These investigations are closely related to the combinatoric knowledge of separable permutations and Schröder numbers, and go even further from a diagrammatic perspective. For physical relevance, we need to further consider dual conformal invariance for two basic diagrammatic patterns to correct the numerator for a local integrand involving one or both of such patterns, while the denominator encoding its pole structure and also the sign factor, are already fixed by rules of the completeness relation. With this extra treatment to ensure the integrals are dual conformally invariant, each Mondrian diagram can be exactly translated to its corresponding physical loop integrand after being summed over all ordered subspaces that admit it.
Multiple states and hysteresis in a two-layer loop current type system
NASA Astrophysics Data System (ADS)
Kuehl, J.; Sheremet, V.
2017-12-01
Rotating table experiments are considered of a two-layer loop current type or gap-leaping system. Such experiments are representative of oceanic regions including the Kuroshio current crossing the Luzon Strait, the Gulf of Mexico Loop Current, the Northeast Chanel of the Gulf of Maine where Scotian shelf water leaps directly from Browns bank to Georges Bank and more. Systems such as these are known to admit two dominant states: leaping across the gap or penetrating into the gap forming a loop current. Which state the system will assume and when transitions between states will occur are open problems. We show that such systems admit multiple steady states with hysteresis when the strength of the current is varied. When the state of the system is viewed in a parameter space representing inertia and vorticity constraint, the system is found to be characterized by a cusp topology of solutions. The existence of such dynamics in two-layer quasi-geostrophic systems has significant implications for oceanographic predictability.
NASA Technical Reports Server (NTRS)
He, X. M.; Ruker, F.; Casale, E.; Carter, D. C.
1992-01-01
The three-dimensional structure of a human monoclonal antibody (Fab), which binds specifically to a major epitope of the transmembrane protein gp41 of the human immunodeficiency virus type 1, has been determined by crystallographic methods to a resolution of 2.7 A. It has been previously determined that this antibody recognizes the epitope SGKLICTTAVPWNAS, belongs to the subclass IgG1 (kappa), and exhibits antibody-dependent cellular cytotoxicity. The quaternary structure of the Fab is in an extended conformation with an elbow bend angle between the constant and variable domains of 175 degrees. Structurally, four of the hypervariable loops can be classified according to previously recognized canonical structures. The third hypervariable loops of the heavy (H3) and light chain (L3) are structurally distinct. Hypervariable loop H3, residues 102H-109H, is unusually extended from the surface. The complementarity-determining region forms a hydrophobic binding pocket that is created primarily from hypervariable loops L3, H3, and H2.
NASA Technical Reports Server (NTRS)
He, Xiao M.; Rueker, Florian; Casale, Elena; Carter, Daniel C.
1992-01-01
The three-dimensional structure of a human monoclonal antibody (Fab), which binds specifically to a major epitope of the transmembrane protein gp41 of the human immunodeficiency virus type 1, has been determined by crystallographic methods to a resolution of 2.7 A. It has been previously determined that this antibody recognizes the epitope SGKLICTTAVPWNAS, belongs to the subclass IgG1 (kappa), and exhibits antibody-dependent cellular cytotoxicity. The quaternary structure of the Fab is in an extended conformation with an elbow bend angle between the constant and variable domains of 175 deg. Structurally, four of the hypervariable loops can be classified according to previously recognized canonical structures. The third hypervariable loops of the heavy (H3) and light chain (L3) are structurally distinct. Hypervariable loop H3, residues 102H-109H, is unusually extended from the surface. The complementarity-determining region forms a hydrophobic binding pocket that is created primarily from hypervariable loops L3, H3, and H2.
Chromosomal Organization by an Interplay of Loop Extrusion and Compartment Interaction
NASA Astrophysics Data System (ADS)
Nuebler, Johannes; Fudenberg, Geoffrey; Imakaev, Maxim; Lu, Carolyn; Goloborodko, Anton; Abdennur, Nezar; Mirny, Leonid
The chromatin fiber in eukaryotic nuclei is far from being simply a confined but otherwise randomly arranged polymer. Rather, it shows a high degree of spatial organization on all length scales, from individual nucleosomes up to well-segregated chromosome territories. On intermediate scales, chromosome conformation capture techniques have revealed two ubiquitous modes of organization: an alternating structure of A/B compartments, where each type preferentially associates with other base pairs of its type, and, typically on a smaller scale, the formation of topologically associating domains (TADs) with increased association within each domain but not across boundaries. The mechanisms behind this organization are only beginning to emerge. We review how the model of active loop extrusion can explain in a unified way such diverse phenomena as TAD formation and mitotic compaction and segregation, and we address in particular to what extent the interplay of active loop extrusion and compartment structure is compatible with recent experiments that interfere with the loading of the proposed loop extrusion factor cohesin. 4D Nucleome.
Tran, Tuan; Disney, Matthew D.
2011-01-01
In our previous study to identify the RNA internal loops that bind an aminoglycoside derivative, we determined that 6′-N-5-hexynoate kanamycin A prefers to bind 1×1 nucleotide internal loops containing C•A mismatches. In this present study, the molecular recognition between a variety of RNAs that are mutated around the C•A loop and the ligand was investigated. Studies show that both loop nucleotides and loop closing pairs affect binding affinity. Most interestingly, it was shown that there is a correlation between the thermodynamic stability of the C•A internal loops and ligand affinity. Specifically, C•A loops that had relatively high or low stability bound the ligand most weakly whereas loops with intermediate stability bound the ligand most tightly. In contrast, there is no correlation between the likelihood that a loop forms a C-A+ pair at lower pH and ligand affinity. It was also found that a 1×1 nucleotide C•A loop that bound to the ligand with the highest affinity is identical to the consensus site in RNAs that are edited by adenosine deaminases acting on RNA type 2 (ADAR2). These studies provide a detailed investigation of factors affecting small molecule recognition of internal loops containing C•A mismatches, which are present in a variety of RNAs that cause disease. PMID:21207945
QUASI-PERIODIC ACCELERATION OF ELECTRONS IN THE FLARE ON 2012 JULY 19
DOE Office of Scientific and Technical Information (OSTI.GOV)
Huang, Jing; Kontar, Eduard P.; Nakariakov, Valery M.
Quasi-periodic pulsations (QPPs) of nonthermal emission in an M7.7 class flare on 2012 July 19 are investigated with spatially resolved observations at microwave and HXR bands and with spectral observations at decimetric, metric waves. Microwave emission at 17 GHz of two footpoints, HXR emission at 20–50 keV of the north footpoint and loop top, and type III bursts at 0.7–3 GHz show prominent in-phase oscillations at 270 s. The microwave emission of the loop leg has less pulsation but stronger emission. Through the estimation of plasma density around the loop top from EUV observations, we find that the local plasmamore » frequency would be 1.5 GHz or even higher. Thus, type III bursts at 700 MHz originate above the loop top. Quasi-periodic acceleration or injection of energetic electrons is proposed to dominate these in-phase QPPs of nonthermal emission from footpoints, loop top, and above. In the overlying region, drifting pulsations (DPS) at 200–600 MHz oscillate at a distinct period (200 s). Its global structure drifts toward lower frequency, which is closely related to upward plasmoids observed simultaneously from EUV emission. Hence, nonthermal emission from overlying plasmoids and underlying flaring loops show different oscillating periods. Two individual systems of quasi-periodic acceleration of electrons are proposed to coincide in the bi-direction outflows from the reconnection region.« less
Matsukuma, Shoichi; Yoshihara, Mitsuyo; Kasai, Fumio; Kato, Akinori; Yoshida, Akira; Akaike, Makoto; Kobayashi, Osamu; Nakayama, Haruhiko; Sakuma, Yuji; Yoshida, Tsutomu; Kameda, Yoichi; Tsuchiya, Eiju; Miyagi, Yohei
2006-01-01
A simple and rapid method to detect the epidermal growth factor receptor hot spot mutation L858R in lung adenocarcinoma was developed based on principles similar to the universal heteroduplex generator technology. A single-stranded oligonucleotide with an internal deletion was used to generate heteroduplexes (loop-hybrids) bearing a loop in the complementary strand derived from the polymerase chain reaction product of the normal or mutant allele. By placing deletion in the oligonucleotide adjacent to the mutational site, difference in electrophoretic mobility between loop-hybrids with normal and mutated DNA was distinguishable in a native polyacrylamide gel. The method was also modified to detect in-frame deletion mutations of epidermal growth factor receptor in lung adenocarcinomas. In addition, the method was adapted to detect hot spot mutations in the B-type Raf kinase (BRAF) at V600 and in a Ras-oncogene (NRAS) at Q61, the mutations commonly found in thyroid carcinomas. Our mutation detection system, designated the loop-hybrid mobility shift assay was sensitive enough to detect mutant DNA comprising 7.5% of the total DNA. As a simple and straightforward mutation detection technique, loop-hybrid mobility shift assay may be useful for the molecular diagnosis of certain types of clinical cancers. Other applications are also discussed. PMID:16931592
Asymmetric structure of five and six membered DNA hairpin loops
NASA Technical Reports Server (NTRS)
Baumann, U.; Chang, S.
1995-01-01
The tertiary structure of nucleic acid hairpins was elucidated by means of the accessibility of the single-strand-specific nuclease from mung bean. This molecular probe has proven especially useful in determining details of the structural arrangement of the nucleotides within a loop. In this study 3'-labeling is introduced to complement previously used 5'-labeling in order to assess and to exclude possible artifacts of the method. Both labeling procedures result in mutually consistent cleavage patterns. Therefore, methodological artifacts can be excluded and the potential of the nuclease as structural probe is increased. DNA hairpins with five and six membered loops reveal an asymmetric loop structure with a sharp bend of the phosphate-ribose backbone between the second and third nucleotide on the 3'-side of a loop. These hairpin structures differ from smaller loops with 3 or 4 members, which reveal this type of bend between the first and second 3' nucleotide, and resemble with respect to the asymmetry anticodon loops of tRNA.
DOE Office of Scientific and Technical Information (OSTI.GOV)
Bucknor, Matthew; Brunett, Acacia J.; Grabaskas, David
In 2015, as part of a Regulatory Technology Development Plan (RTDP) effort for sodium-cooled fast reactors (SFRs), Argonne National Laboratory investigated the current state of knowledge of source term development for a metal-fueled, pool-type SFR. This paper provides a summary of past domestic metal-fueled SFR incidents and experiments and highlights information relevant to source term estimations that were gathered as part of the RTDP effort. The incidents described in this paper include fuel pin failures at the Sodium Reactor Experiment (SRE) facility in July of 1959, the Fermi I meltdown that occurred in October of 1966, and the repeated meltingmore » of a fuel element within an experimental capsule at the Experimental Breeder Reactor II (EBR-II) from November 1967 to May 1968. The experiments described in this paper include the Run-Beyond-Cladding-Breach tests that were performed at EBR-II in 1985 and a series of severe transient overpower tests conducted at the Transient Reactor Test Facility (TREAT) in the mid-1980s.« less
NASA Technical Reports Server (NTRS)
Simon, M.; Mileant, A.
1986-01-01
The steady-state behavior of a particular type of digital phase-locked loop (DPLL) with an integrate-and-dump circuit following the phase detector is characterized in terms of the probability density function (pdf) of the phase error in the loop. Although the loop is entirely digital from an implementation standpoint, it operates at two extremely different sampling rates. In particular, the combination of a phase detector and an integrate-and-dump circuit operates at a very high rate whereas the loop update rate is very slow by comparison. Because of this dichotomy, the loop can be analyzed by hybrid analog/digital (s/z domain) techniques. The loop is modeled in such a general fashion that previous analyses of the Real-Time Combiner (RTC), Subcarrier Demodulator Assembly (SDA), and Symbol Synchronization Assembly (SSA) fall out as special cases.
Interaction of 〈1 0 0〉 dislocation loops with dislocations studied by dislocation dynamics in α-iron
NASA Astrophysics Data System (ADS)
Shi, X. J.; Dupuy, L.; Devincre, B.; Terentyev, D.; Vincent, L.
2015-05-01
Interstitial dislocation loops with Burgers vector of 〈1 0 0〉 type are formed in α-iron under neutron or heavy ion irradiation. As the density and size of these loops increase with radiation dose and temperature, these defects are thought to play a key role in hardening and subsequent embrittlement of iron-based steels. The aim of the present work is to study the pinning strength of the loops on mobile dislocations. Prior to run massive Dislocation Dynamics (DD) simulations involving experimentally representative array of radiation defects and dislocations, the DD code and its parameterization are validated by comparing the individual loop-dislocation reactions with those obtained from direct atomistic Molecular Dynamics (MD) simulations. Several loop-dislocation reaction mechanisms are successfully reproduced as well as the values of the unpinning stress to detach mobile dislocations from the defects.
Xiao, Yibei; Luo, Min; Hayes, Robert P; Kim, Jonathan; Ng, Sherwin; Ding, Fang; Liao, Maofu; Ke, Ailong
2017-06-29
Type I CRISPR systems feature a sequential dsDNA target searching and degradation process, by crRNA-displaying Cascade and nuclease-helicase fusion enzyme Cas3, respectively. Here we present two cryo-EM snapshots of the Thermobifida fusca type I-E Cascade: (1) unwinding 11 bp of dsDNA at the seed-sequence region to scout for sequence complementarity, and (2) further unwinding of the entire protospacer to form a full R-loop. These structures provide the much-needed temporal and spatial resolution to resolve key mechanistic steps leading to Cas3 recruitment. In the early steps, PAM recognition causes severe DNA bending, leading to spontaneous DNA unwinding to form a seed-bubble. The full R-loop formation triggers conformational changes in Cascade, licensing Cas3 to bind. The same process also generates a bulge in the non-target DNA strand, enabling its handover to Cas3 for cleavage. The combination of both negative and positive checkpoints ensures stringent yet efficient target degradation in type I CRISPR-Cas systems. Copyright © 2017 Elsevier Inc. All rights reserved.
Bougie, Daniel W; Peterson, Julie A; Kanack, Adam J; Curtis, Brian R; Aster, Richard H
2014-01-01
Background HNA-3a specific antibodies can cause severe, sometimes fatal, transfusion related acute lung injury (TRALI) when present in transfused blood. The HNA3-a/b antigens are determined by an R154Q polymorphism in the first of five extracellular loops of the 10-membrane spanning choline transporter-like protein 2 (CTL2) expressed on neutrophils, lymphocytes and other tissues. About 50% of HNA-3a antibodies (Type 1) can be detected using CTL2 Loop 1 peptides containing R154; the remaining 50% (Type 2) fail to recognize this target. Understanding the basis for this difference could guide efforts to develop practical assays to screen blood donors for HNA-3 antibodies. Study design and methods Reactions of HNA-3a antibodies against recombinant versions of human, mouse, and human/mouse (chimeric) CTL2 were characterized using flow cytometry and various solid phase assays. Results Findings made show that, for binding to CTL2, Type 2 HNA-3a antibodies require non-polymorphic amino acid residues in the third, and possibly the second, extracellular loops of CTL2 to be in a configuration comparable to that found naturally in the cell membrane. In contrast, Type 1 antibodies require only peptides from the first extracellular loop that contain R154 for recognition. Conclusion Although Type 1 HNA-3a antibodies can readily be detected in solid phase assays that use a CTL2 peptide containing R154 as a target, development of a practical test to screen blood donors for Type 2 antibodies will pose a serious technical challenge because of the complex nature of the epitope(s) recognized by this antibody sub-group. PMID:24846273
Ly, Trang T; Weinzimer, Stuart A; Maahs, David M; Sherr, Jennifer L; Roy, Anirban; Grosman, Benyamin; Cantwell, Martin; Kurtz, Natalie; Carria, Lori; Messer, Laurel; von Eyben, Rie; Buckingham, Bruce A
2017-08-01
Automated insulin delivery systems, utilizing a control algorithm to dose insulin based upon subcutaneous continuous glucose sensor values and insulin pump therapy, will soon be available for commercial use. The objective of this study was to determine the preliminary safety and efficacy of initialization parameters with the Medtronic hybrid closed-loop controller by comparing percentage of time in range, 70-180 mg/dL (3.9-10 mmol/L), mean glucose values, as well as percentage of time above and below target range between sensor-augmented pump therapy and hybrid closed-loop, in adults and adolescents with type 1 diabetes. We studied an initial cohort of 9 adults followed by a second cohort of 15 adolescents, using the Medtronic hybrid closed-loop system with the proportional-integral-derivative with insulin feed-back (PID-IFB) algorithm. Hybrid closed-loop was tested in supervised hotel-based studies over 4-5 days. The overall mean percentage of time in range (70-180 mg/dL, 3.9-10 mmol/L) during hybrid closed-loop was 71.8% in the adult cohort and 69.8% in the adolescent cohort. The overall percentage of time spent under 70 mg/dL (3.9 mmol/L) was 2.0% in the adult cohort and 2.5% in the adolescent cohort. Mean glucose values were 152 mg/dL (8.4 mmol/L) in the adult cohort and 153 mg/dL (8.5 mmol/L) in the adolescent cohort. Closed-loop control using the Medtronic hybrid closed-loop system enables adaptive, real-time basal rate modulation. Initializing hybrid closed-loop in clinical practice will involve individualizing initiation parameters to optimize overall glucose control. © 2016 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.
Observations of decay-less low-amplitude kink oscillations of EUV coronal loops
NASA Astrophysics Data System (ADS)
Nisticò, Giuseppe; Nakariakov, Valery; Anfinogentov, Sergey
The high spatial and temporal resolution observations at Extreme Ultra-Violet (EUV) wavelengths from the Atmospheric Imaging Assembly (AIA) of the Solar Dynamics Observatory (SDO) reveal new features in kink oscillations of coronal loops. We show that, in addition to the well-known rapidly decaying oscillations, a new type of kink waves is present, characterized by low-amplitude and undamped oscillations, that we define as decay-less. Typical periods range from 2.5 to 12 min in both regimes and are different for different loops, increasing with the loop length. Estimates of the loop lengths are supported by three dimensional reconstruction of the loop geometry. The amplitude for the decay-less regime is about 1 Mm, close to the spatial resolution of the AIA instruments. The oscillation phase, measured by the cross-correlation method, is found to be constant along each analysed loop, and the spatial structure of the phase of the oscillations corresponds to the fundamental standing kink mode. We show that the observed behaviours are consistent with the empirical model of a damped linear oscillator excited by a continuous low-amplitude harmonic driver, in addition to an eventual impulsive high-amplitude driver. The observed life-time of the oscillations is likely to be determined by the observational conditions rather than any physical damping. However, the balance between the driving and damping is a necessary ingredient of this model. The properties of this type of transverse oscillations make them interesting object of study in the framework of resonant absorption theory and coronal heating process.
Erdemir, Aysegul; Mutlu, Ozal
2017-06-01
Lactate dehydrogenase (LDH) is an important metabolic enzyme in glycolysis and it has been considered as the main energy source in many organisms including apicomplexan parasites. Differences at the active site loop of the host and parasite LDH's makes this enzyme an attractive target for drug inhibitors. In this study, five amino acid insertions in the active site pocket of Theileria annulata LDH (TaLDH) were deleted by PCR-based site-directed mutagenesis, expression and activity analysis of mutant and wild type TaLDH enzymes were performed. Removal of the insertion at the active site loop caused production of an inactive enzyme. Furthermore, structures of wild and mutant enzymes were predicted by comparative modeling and the importance of the insertions at the active site loop were also assigned by molecular docking and dynamics simulations in order to evaluate essential role of this loop for the enzymatic activity. Pentapeptide insertion removal resulted in loss of LDH activity due to deletion of Trp96 and conformational change of Arg98 because of loop instability. Analysis of wild type and mutant enzymes with comparative molecular dynamics simulations showed that the fluctuations of the loop residues increase in mutant enzyme. Together with in silico studies, in vitro results revealed that active site loop has a vital role in the enzyme activity and our findings promise hope for the further drug design studies against theileriosis and other apicomplexan parasite diseases. Copyright © 2017 Elsevier Inc. All rights reserved.
Yamashita, Takahiro; Tose, Koji; Shichida, Yoshinori
2008-01-01
G protein-coupled receptors (GPCRs) are classified into several families based on their amino acid sequences. In family 1, GPCRs such as rhodopsin and adrenergic receptor, the structure-function relationship has been extensively investigated to demonstrate that exposure of the third cytoplasmic loop is essential for selective G protein activation. In contrast, much less is known about other families. Here we prepared chimeric mutants between Gt-coupled rhodopsin and Gi/Go- and Gs-coupled glucagon-like peptide-1 (GLP-1) receptor of family 2 and tried to identify the loop region that functions at the third cytoplasmic loop position of rhodopsin. We succeeded in expressing a mutant having the first cytoplasmic loop of GLP-1 receptor and found that this mutant activated Gi and Go efficiently but did not activate Gt. Moreover, the rhodopsin mutant having the first loop of Gs-coupled secretin receptor of family 2 decreased the Gi and Go activation efficiencies. Therefore, the first loop of GLP-1 receptor would share a similar role to the third loop of rhodopsin in G protein activation. This result strongly suggested that different families of GPCRs have maintained molecular architectures of their ancestral types to generate a common mechanism, namely exposure of the cytoplasmic loop, to activate peripheral G protein.
Kinematics, turbulence, and star formation of z ˜ 1 strongly lensed galaxies seen with MUSE
NASA Astrophysics Data System (ADS)
Patrício, V.; Richard, J.; Carton, D.; Contini, T.; Epinat, B.; Brinchmann, J.; Schmidt, K. B.; Krajnović, D.; Bouché, N.; Weilbacher, P. M.; Pelló, R.; Caruana, J.; Maseda, M.; Finley, H.; Bauer, F. E.; Martinez, J.; Mahler, G.; Lagattuta, D.; Clément, B.; Soucail, G.; Wisotzki, L.
2018-06-01
We analyse a sample of eight highly magnified galaxies at redshift 0.6 < z < 1.5 observed with MUSE, exploring the resolved properties of these galaxies at sub-kiloparsec scales. Combining multiband HST photometry and MUSE spectra, we derive the stellar mass, global star formation rates (SFRs), extinction and metallicity from multiple nebular lines, concluding that our sample is representative of z ˜ 1 star-forming galaxies. We derive the 2D kinematics of these galaxies from the [O II ] emission and model it with a new method that accounts for lensing effects and fits multiple images simultaneously. We use these models to calculate the 2D beam-smearing correction and derive intrinsic velocity dispersion maps. We find them to be fairly homogeneous, with relatively constant velocity dispersions between 15 and 80 km s-1 and Gini coefficient of {≲ }0.3. We do not find any evidence for higher (or lower) velocity dispersions at the positions of bright star-forming clumps. We derive resolved maps of dust attenuation and attenuation-corrected SFRs from emission lines for two objects in the sample. We use this information to study the relation between resolved SFR and velocity dispersion. We find that these quantities are not correlated, and the high-velocity dispersions found for relatively low star-forming densities seems to indicate that, at sub-kiloparsec scales, turbulence in high-z discs is mainly dominated by gravitational instability rather than stellar feedback.
EMBEDDED CLUSTERS IN THE LARGE MAGELLANIC CLOUD USING THE VISTA MAGELLANIC CLOUDS SURVEY
DOE Office of Scientific and Technical Information (OSTI.GOV)
Romita, Krista; Lada, Elizabeth; Cioni, Maria-Rosa, E-mail: k.a.romita@ufl.edu, E-mail: elada@ufl.edu, E-mail: mcioni@aip.de
We present initial results of the first large-scale survey of embedded star clusters in molecular clouds in the Large Magellanic Cloud (LMC) using near-infrared imaging from the Visible and Infrared Survey Telescope for Astronomy Magellanic Clouds Survey. We explored a ∼1.65 deg{sup 2} area of the LMC, which contains the well-known star-forming region 30 Doradus as well as ∼14% of the galaxy’s CO clouds, and identified 67 embedded cluster candidates, 45 of which are newly discovered as clusters. We have determined the sizes, luminosities, and masses for these embedded clusters, examined the star formation rates (SFRs) of their corresponding molecularmore » clouds, and made a comparison between the LMC and the Milky Way. Our preliminary results indicate that embedded clusters in the LMC are generally larger, more luminous, and more massive than those in the local Milky Way. We also find that the surface densities of both embedded clusters and molecular clouds is ∼3 times higher than in our local environment, the embedded cluster mass surface density is ∼40 times higher, the SFR is ∼20 times higher, and the star formation efficiency is ∼10 times higher. Despite these differences, the SFRs of the LMC molecular clouds are consistent with the SFR scaling law presented in Lada et al. This consistency indicates that while the conditions of embedded cluster formation may vary between environments, the overall process within molecular clouds may be universal.« less
NASA Astrophysics Data System (ADS)
Getman, Konstantin V.; Feigelson, Eric; Kuhn, Michael A.; Broos, Patrick S; Townsley, Leisa K.; Naylor, Tim; Povich, Matthew S.; Luhman, Kevin; Garmire, Gordon
2014-08-01
The MYStIX (Massive Young Star-Forming Complex Study in Infrared and X-ray) project seeks to characterize 20 OB-dominated young star forming regions (SFRs) at distances <4 kpc using photometric catalogs from the Chandra X-ray Observatory, Spitzer Space Telescope, UKIRT and 2MASS surveys. As part of the MYStIX project, we developed a new stellar chronometer that employs near-infrared and X-ray photometry data, AgeJX. Computing AgeJX averaged over MYStIX (sub)clusters reveals previously unknown age gradients across most of the MYStIX regions as well as within some individual rich clusters. Within the SFRs, the inferred AgeJX ages are youngest in obscured locations in molecular clouds, intermediate in revealed stellar clusters, and oldest in distributed stellar populations. Noticeable intra-cluster gradients are seen in the NGC 2024 (Flame Nebula) star cluster and the Orion Nebula Cluster (ONC): stars in cluster cores appear younger and thus were formed later than stars in cluster halos. The latter result has two important implications for the formation of young stellar clusters. Clusters likely form slowly: they do not arise from a single nearly-instantaneous burst of star formation. The simple models where clusters form inside-out are likely incorrect, and more complex models are needed. We provide several star formation scenarios that alone or in combination may lead to the observed core-halo age gradients.
SIGNIFICANT ENHANCEMENT OF H{sub 2} FORMATION IN DISK GALAXIES UNDER STRONG RAM PRESSURE
DOE Office of Scientific and Technical Information (OSTI.GOV)
Henderson, Benjamin; Bekki, Kenji
We show for the first time that H{sub 2} formation on dust grains can be enhanced in disk galaxies under strong ram pressure (RP). We numerically investigate how the time evolution of H i and H{sub 2} components in disk galaxies orbiting a group/cluster of galaxies can be influenced by the hydrodynamical interaction between the gaseous components of the galaxies and the hot intracluster medium. We find that compression of H i caused by RP increases H{sub 2} formation in disk galaxies before RP rapidly strips H i, cutting off the fuel supply and causing a drop in H{sub 2}more » density. We also find that the level of this H{sub 2} formation enhancement in a disk galaxy under RP depends on the mass of its host cluster dark matter halo, the initial positions and velocities of the disk galaxy, and the disk inclination angle with respect to the orbital plane. We demonstrate that dust growth is a key factor in the evolution of the H i and H{sub 2} mass in disk galaxies under strong RP. We discuss how the correlation between H{sub 2} fractions and surface gas densities of disk galaxies evolves with time in the galaxies under RP. We also discuss whether galaxy-wide star formation rates (SFRs) in cluster disk galaxies can be enhanced by RP if the SFRs depend on H{sub 2} densities.« less
NASA Astrophysics Data System (ADS)
Ao, Y.; Matsuda, Y.; Henkel, C.; Iono, D.; Alexander, D. M.; Chapman, S. C.; Geach, J.; Hatsukade, B.; Hayes, M.; Hine, N. K.; Kato, Y.; Kawabe, R.; Kohno, K.; Kubo, M.; Lehnert, M.; Malkan, M.; Menten, K. M.; Nagao, T.; Norris, R. P.; Ouchi, M.; Saito, T.; Tamura, Y.; Taniguchi, Y.; Umehata, H.; Weiss, A.
2017-12-01
We study the heating mechanisms and Lyα escape fractions of 35 Lyα blobs (LABs) at z ≈ 3.1 in the SSA22 field. Dust continuum sources have been identified in 11 of the 35 LABs, all with star formation rates (SFRs) above 100 M ⊙ yr-1. Likely radio counterparts are detected in 9 out of 29 investigated LABs. The detection of submillimeter dust emission is more linked to the physical size of the Lyα emission than to the Lyα luminosities of the LABs. A radio excess in the submillimeter/radio-detected LABs is common, hinting at the presence of active galactic nuclei. Most radio sources without X-ray counterparts are located at the centers of the LABs. However, all X-ray counterparts avoid the central regions. This may be explained by absorption due to exceptionally large column densities along the line-of-sight or by LAB morphologies, which are highly orientation dependent. The median Lyα escape fraction is about 3% among the submillimeter-detected LABs, which is lower than a lower limit of 11% for the submillimeter-undetected LABs. We suspect that the large difference is due to the high dust attenuation supported by the large SFRs, the dense large-scale environment as well as large uncertainties in the extinction corrections required to apply when interpreting optical data.
Can Flare Loops Contribute to the White-light Emission of Stellar Superflares?
NASA Astrophysics Data System (ADS)
Heinzel, P.; Shibata, K.
2018-06-01
Since the discovery of stellar superflares by the Kepler satellite, these extremely energetic events have been studied in analogy to solar flares. Their white-light (WL) continuum emission has been interpreted as being produced by heated ribbons. In this paper, we compute the WL emission from overlying flare loops depending on their density and temperature and show that, under conditions expected during superflares, the continuum brightening due to extended loop arcades can significantly contribute to stellar flux detected by Kepler. This requires electron densities in the loops of 1012‑1013 cm‑3 or higher. We show that such densities, exceeding those typically present in solar-flare loops, can be reached on M-dwarf and solar-type superflare stars with large starspots and much stronger magnetic fields. Quite importantly, the WL radiation of loops is not very sensitive to their temperature and thus both cool as well as hot loops may contribute. We show that the WL intensity emergent from optically thin loops is lower than the blackbody radiation from flare ribbons, but the contribution of loops to total stellar flux can be quite important due to their significant emitting areas. This new scenario for interpreting superflare emission suggests that the observed WL flux is due to a mixture of the ribbon and loop radiation and can be even loop-dominated during the gradual phase of superflares.
Electron Injection by E-Field Drift and its Application in Starting-up Tokamaks at Low Loop Voltage
NASA Astrophysics Data System (ADS)
Pan, Yuan; Yan, Xiao-Lin; Liu, Bao-Hua
2003-05-01
We propose an innovative method of electron injection by E-field drift into a plasma device and discuss its application in starting-up tokamak plasmas at low loop voltage. The experimental results obtained from HT-6M Tokamak are also presented. The breakdown loop voltage is obviously reduced and the discharge performance is improved by using the electron injection method. It could be applied to some other types of plasma device.
Chern-Simons expectation values and quantum horizons from loop quantum gravity and the Duflo map.
Sahlmann, Hanno; Thiemann, Thomas
2012-03-16
We report on a new approach to the calculation of Chern-Simons theory expectation values, using the mathematical underpinnings of loop quantum gravity, as well as the Duflo map, a quantization map for functions on Lie algebras. These new developments can be used in the quantum theory for certain types of black hole horizons, and they may offer new insights for loop quantum gravity, Chern-Simons theory and the theory of quantum groups.
Kanematsu, Hideyuki; Kudara, Hikonaru; Kanesaki, Shun; Kogo, Takeshi; Ikegai, Hajime; Ogawa, Akiko; Hirai, Nobumitsu
2016-10-11
A laboratory biofilm reactor (LBR) was modified to a new loop-type closed system in order to evaluate novel stents and catheter materials using 3D optical microscopy and Raman spectroscopy. Two metallic specimens, pure nickel and cupronickel (80% Cu-20% Ni), along with two polymers, silicone and polyurethane, were chosen as examples to ratify the system. Each set of specimens was assigned to the LBR using either tap water or an NB (Nutrient broth based on peptone from animal foods and beef extract mainly)-cultured solution with E-coli formed over 48-72 h. The specimens were then analyzed using Raman Spectroscopy. 3D optical microscopy was employed to corroborate the Raman Spectroscopy results for only the metallic specimens since the inherent roughness of the polymer specimens made such measurements difficult. The findings suggest that the closed loop-type LBR together with Raman spectroscopy analysis is a useful method for evaluating biomaterials as a potential urinary system.
NASA Astrophysics Data System (ADS)
Straatman, Caroline M. S.; Spitler, Lee R.; Quadri, Ryan F.; Labbé, Ivo; Glazebrook, Karl; Persson, S. Eric; Papovich, Casey; Tran, Kim-Vy H.; Brammer, Gabriel B.; Cowley, Michael; Tomczak, Adam; Nanayakkara, Themiya; Alcorn, Leo; Allen, Rebecca; Broussard, Adam; van Dokkum, Pieter; Forrest, Ben; van Houdt, Josha; Kacprzak, Glenn G.; Kawinwanichakij, Lalitwadee; Kelson, Daniel D.; Lee, Janice; McCarthy, Patrick J.; Mehrtens, Nicola; Monson, Andrew; Murphy, David; Rees, Glen; Tilvi, Vithal; Whitaker, Katherine E.
2016-10-01
The FourStar galaxy evolution survey (ZFOURGE) is a 45 night legacy program with the FourStar near-infrared camera on Magellan and one of the most sensitive surveys to date. ZFOURGE covers a total of 400 arcmin2 in cosmic fields CDFS, COSMOS and UDS, overlapping CANDELS. We present photometric catalogs comprising >70,000 galaxies, selected from ultradeep K s -band detection images (25.5-26.5 AB mag, 5σ, total), and >80% complete to K s < 25.3-25.9 AB. We use 5 near-IR medium-bandwidth filters (J 1, J 2, J 3, H s , H l ) as well as broad-band K s at 1.05-2.16 μm to 25-26 AB at a seeing of ˜0.″5. Each field has ancillary imaging in 26-40 filters at 0.3-8 μm. We derive photometric redshifts and stellar population properties. Comparing with spectroscopic redshifts indicates a photometric redshift uncertainty σ z = 0.010, 0.009, and 0.011 in CDFS, COSMOS, and UDS. As spectroscopic samples are often biased toward bright and blue sources, we also inspect the photometric redshift differences between close pairs of galaxies, finding σ z,pairs = 0.01-0.02 at 1 < z < 2.5. We quantify how σ z,pairs depends on redshift, magnitude, spectral energy distribution type, and the inclusion of FourStar medium bands. σ z,pairs is smallest for bright, blue star-forming samples, while red star-forming galaxies have the worst σ z,pairs. Including FourStar medium bands reduces σ z,pairs by 50% at 1.5 < z < 2.5. We calculate star formation rates (SFRs) based on ultraviolet and ultradeep far-IR Spitzer/MIPS and Herschel/PACS data. We derive rest-frame U - V and V - J colors, and illustrate how these correlate with specific SFR and dust emission to z = 3.5. We confirm the existence of quiescent galaxies at z ˜ 3, demonstrating their SFRs are suppressed by > ×15. This paper contains data gathered with the 6.5 meter Magellan Telescopes located at Las Campanas observatory, Chile
Lungu, Radu P; Huckaby, Dale A
2008-07-21
An exactly solvable lattice model describing a binary solution is considered where rodlike molecules of types AA and BB cover the links of a honeycomb lattice, the neighboring molecular ends having three-body and orientation-dependent bonding interactions. At phase coexistence of AA-rich and BB-rich phases, the average fraction of each type of triangle of neighboring molecular ends is calculated exactly. The fractions of the different types of triangles are then used to deduce the local microscopic structure of the coexisting phases for a case of the model that contains two closed loops in the phase diagram.
EVIDENCE FOR ELEVATED X-RAY EMISSION IN LOCAL LYMAN BREAK GALAXY ANALOGS
DOE Office of Scientific and Technical Information (OSTI.GOV)
Basu-Zych, Antara R.; Lehmer, Bret D.; Hornschemeier, Ann E.
2013-09-10
Our knowledge of how X-ray emission scales with star formation at the earliest times in the universe relies on studies of very distant Lyman break galaxies (LBGs). In this paper, we study the relationship between the 2-10 keV X-ray luminosity (L{sub X}), assumed to originate from X-ray binaries (XRBs), and star formation rate (SFR) in ultraviolet (UV) selected z < 0.1 Lyman break analogs (LBAs). We present Chandra observations for four new Galaxy Evolution Explorer selected LBAs. Including previously studied LBAs, Haro 11 and VV 114, we find that LBAs demonstrate L{sub X}/SFR ratios that are elevated by {approx}1.5{sigma} comparedmore » to local galaxies, similar to the ratios found for stacked LBGs in the early universe (z > 2). Unlike some of the composite LBAs studied previously, we show that these LBAs are unlikely to harbor active galactic nuclei, based on their optical and X-ray spectra and the spatial distribution of the X-rays in three spatially extended cases. Instead, we expect that high-mass X-ray binaries (HMXBs) dominate the X-ray emission in these galaxies, based on their high specific SFRs (sSFRs {identical_to} SFR/M{sub *} {>=} 10{sup -9} yr{sup -1}), which suggest the prevalence of young stellar populations. Since both UV-selected populations (LBGs and LBAs) have lower dust attenuations and metallicities compared to similar samples of more typical local galaxies, we investigate the effects of dust extinction and metallicity on the L{sub X}/SFR for the broader population of galaxies with high sSFRs (>10{sup -10} yr{sup -1}). The estimated dust extinctions (corresponding to column densities of N{sub H} < 10{sup 22} cm{sup -2}) are expected to have insignificant effects on observed L{sub X}/SFR ratio for the majority of galaxy samples. We find that the observed relationship between L{sub X}/SFR and metallicity appears consistent with theoretical expectations from XRB population synthesis models. Therefore, we conclude that lower metallicities, related to more luminous HMXBs such as ultraluminous X-ray sources, drive the elevated L{sub X}/SFR observed in our sample of z < 0.1 LBAs. The relatively metal-poor, active mode of star formation in LBAs and distant z > 2 LBGs may yield higher total HMXB luminosity than found in typical galaxies in the local universe.« less
Diabetic microangiopathy in capillaroscopic examination of juveniles with diabetes type 1.
Kaminska-Winciorek, Grażyna; Deja, Grażyna; Polańska, Joanna; Jarosz-Chobot, Przemysława
2012-01-30
The aim of this work was a quantitative and qualitative assessment of a selected part of the microcirculation in children with diabetes type 1 using videocapillaroscopy technique. The authors tested a group consisting of 145 children (70 boys, 75 girls) diagnosed and treated for diabetes type 1 in the Diabetic Clinic of GCZD in Katowice for at least one year. The study included history, clinical examination (including dermatological examination) and videocapillaroscopy. Capillaroscopy, a non-invasive, painless and easily repeatable test, was performed using videocapillaroscopy with digital storage of the obtained images. All nailfolds were examined in all children using videocapillaroscopy, and the obtained images were assessed quantitatively and qualitatively for changes in capillary loops in the tested children according to the defined diagnostic procedure. The analysis of capillaroscopic images described selected quantitative and qualitative characteristics. The conducted analysis showed an increase in the number of capillaries and their elongation, the presence of megacapillaries and Raynaud loops, which were accompanied by an intensive red background, indicating possible neoangiogenesis. The increase in the number of capillaries, disturbances in distribution of capillaries and the presence of abnormal capillaries were correlated with the longer duration of diabetes. Raynaud loops were more frequently found in the cases of increased mean values of HbA1c. Higher values of HbA1c influenced the capillaroscopic images, mainly the number of vessels, including Raynaud loops. Videocapillaroscopy technique could be a useful tool to detect the early changes of microangiopathy in children with diabetes type 1.
Dual allosteric activation mechanisms in monomeric human glucokinase
Whittington, A. Carl; Larion, Mioara; Bowler, Joseph M.; Ramsey, Kristen M.; Brüschweiler, Rafael; Miller, Brian G.
2015-01-01
Cooperativity in human glucokinase (GCK), the body’s primary glucose sensor and a major determinant of glucose homeostatic diseases, is fundamentally different from textbook models of allostery because GCK is monomeric and contains only one glucose-binding site. Prior work has demonstrated that millisecond timescale order-disorder transitions within the enzyme’s small domain govern cooperativity. Here, using limited proteolysis, we map the site of disorder in unliganded GCK to a 30-residue active-site loop that closes upon glucose binding. Positional randomization of the loop, coupled with genetic selection in a glucokinase-deficient bacterium, uncovers a hyperactive GCK variant with substantially reduced cooperativity. Biochemical and structural analysis of this loop variant and GCK variants associated with hyperinsulinemic hypoglycemia reveal two distinct mechanisms of enzyme activation. In α-type activation, glucose affinity is increased, the proteolytic susceptibility of the active site loop is suppressed and the 1H-13C heteronuclear multiple quantum coherence (HMQC) spectrum of 13C-Ile–labeled enzyme resembles the glucose-bound state. In β-type activation, glucose affinity is largely unchanged, proteolytic susceptibility of the loop is enhanced, and the 1H-13C HMQC spectrum reveals no perturbation in ensemble structure. Leveraging both activation mechanisms, we engineer a fully noncooperative GCK variant, whose functional properties are indistinguishable from other hexokinase isozymes, and which displays a 100-fold increase in catalytic efficiency over wild-type GCK. This work elucidates specific structural features responsible for generating allostery in a monomeric enzyme and suggests a general strategy for engineering cooperativity into proteins that lack the structural framework typical of traditional allosteric systems. PMID:26283387
NASA Astrophysics Data System (ADS)
Wang, Jun-Song; Wang, Mei-Li; Li, Xiao-Li; Ernst, Niebur
2015-03-01
Epilepsy is believed to be caused by a lack of balance between excitation and inhibitation in the brain. A promising strategy for the control of the disease is closed-loop brain stimulation. How to determine the stimulation control parameters for effective and safe treatment protocols remains, however, an unsolved question. To constrain the complex dynamics of the biological brain, we use a neural population model (NPM). We propose that a proportional-derivative (PD) type closed-loop control can successfully suppress epileptiform activities. First, we determine the stability of root loci, which reveals that the dynamical mechanism underlying epilepsy in the NPM is the loss of homeostatic control caused by the lack of balance between excitation and inhibition. Then, we design a PD type closed-loop controller to stabilize the unstable NPM such that the homeostatic equilibriums are maintained; we show that epileptiform activities are successfully suppressed. A graphical approach is employed to determine the stabilizing region of the PD controller in the parameter space, providing a theoretical guideline for the selection of the PD control parameters. Furthermore, we establish the relationship between the control parameters and the model parameters in the form of stabilizing regions to help understand the mechanism of suppressing epileptiform activities in the NPM. Simulations show that the PD-type closed-loop control strategy can effectively suppress epileptiform activities in the NPM. Project supported by the National Natural Science Foundation of China (Grant Nos. 61473208, 61025019, and 91132722), ONR MURI N000141010278, and NIH grant R01EY016281.
Dual allosteric activation mechanisms in monomeric human glucokinase.
Whittington, A Carl; Larion, Mioara; Bowler, Joseph M; Ramsey, Kristen M; Brüschweiler, Rafael; Miller, Brian G
2015-09-15
Cooperativity in human glucokinase (GCK), the body's primary glucose sensor and a major determinant of glucose homeostatic diseases, is fundamentally different from textbook models of allostery because GCK is monomeric and contains only one glucose-binding site. Prior work has demonstrated that millisecond timescale order-disorder transitions within the enzyme's small domain govern cooperativity. Here, using limited proteolysis, we map the site of disorder in unliganded GCK to a 30-residue active-site loop that closes upon glucose binding. Positional randomization of the loop, coupled with genetic selection in a glucokinase-deficient bacterium, uncovers a hyperactive GCK variant with substantially reduced cooperativity. Biochemical and structural analysis of this loop variant and GCK variants associated with hyperinsulinemic hypoglycemia reveal two distinct mechanisms of enzyme activation. In α-type activation, glucose affinity is increased, the proteolytic susceptibility of the active site loop is suppressed and the (1)H-(13)C heteronuclear multiple quantum coherence (HMQC) spectrum of (13)C-Ile-labeled enzyme resembles the glucose-bound state. In β-type activation, glucose affinity is largely unchanged, proteolytic susceptibility of the loop is enhanced, and the (1)H-(13)C HMQC spectrum reveals no perturbation in ensemble structure. Leveraging both activation mechanisms, we engineer a fully noncooperative GCK variant, whose functional properties are indistinguishable from other hexokinase isozymes, and which displays a 100-fold increase in catalytic efficiency over wild-type GCK. This work elucidates specific structural features responsible for generating allostery in a monomeric enzyme and suggests a general strategy for engineering cooperativity into proteins that lack the structural framework typical of traditional allosteric systems.
Detailed ADM-based Modeling of Shock Retreat and X-ray Emission of τ Sco
NASA Astrophysics Data System (ADS)
Fletcher, C. L.; Petit, V.; Cohen, D. H.; Townsend, R. H.; Wade, G. A.
2018-01-01
Leveraging the improvement of spectropolarimeters over the past few decades, surveys have found that about 10% of OB-type stars host strong (˜ kG) and mostly dipolar surface magnetic fields. One B-type star, τ Sco, has a more complex surface magnetic field than the general population of OB stars. Interestingly, its X-ray luminosity is an order of magnitude higher than predicted from analytical models of magnetized winds. Previous studies of τ Sco's magnetosphere have predicted that the region of closed field loops should be located close to the stellar surface. However, the lack of X-ray variability and the location of the shock-heated plasma measured from forbidden-to-intercombination X-ray line ratios suggest that the hot plasma, and hence the closed magnetic loops, extend considerably farther from the stellar surface, implying a significantly lower mass loss rate than initially assumed. We present an adaptation of the Analytic Dynamical Magnetosphere model, describing the magnetic confinement of the stellar wind, for an arbitrary field loop configuration. This model is used to predict the shock-heated plasma temperatures for individual field loops, which are then compared to high resolution grating spectra from the Chandra X-ray Observatory. This comparison shows that larger closed magnetic loops are needed.
Huang, Xuhui; Wang, Dong; Weiss, Dahlia R.; Bushnell, David A.; Kornberg, Roger D.; Levitt, Michael
2010-01-01
A structurally conserved element, the trigger loop, has been suggested to play a key role in substrate selection and catalysis of RNA polymerase II (pol II) transcription elongation. Recently resolved X-ray structures showed that the trigger loop forms direct interactions with the β-phosphate and base of the matched nucleotide triphosphate (NTP) through residues His1085 and Leu1081, respectively. In order to understand the role of these two critical residues in stabilizing active site conformation in the dynamic complex, we performed all-atom molecular dynamics simulations of the wild-type pol II elongation complex and its mutants in explicit solvent. In the wild-type complex, we found that the trigger loop is stabilized in the “closed” conformation, and His1085 forms a stable interaction with the NTP. Simulations of point mutations of His1085 are shown to affect this interaction; simulations of alternative protonation states, which are inaccessible through experiment, indicate that only the protonated form is able to stabilize the His1085-NTP interaction. Another trigger loop residue, Leu1081, stabilizes the incoming nucleotide position through interaction with the nucleotide base. Our simulations of this Leu mutant suggest a three-component mechanism for correctly positioning the incoming NTP in which (i) hydrophobic contact through Leu1081, (ii) base stacking, and (iii) base pairing work together to minimize the motion of the incoming NTP base. These results complement experimental observations and provide insight into the role of the trigger loop on transcription fidelity. PMID:20798057
Unambiguous Evidence of Coronal Implosions during Solar Eruptions and Flares
NASA Astrophysics Data System (ADS)
Wang, Juntao; Simões, P. J. A.; Fletcher, L.
2018-05-01
In the implosion conjecture, coronal loops contract as the result of magnetic energy release in solar eruptions and flares. However, after almost two decades, observations of this phenomenon are still rare and most previous reports are plagued by projection effects so that loop contraction could be either true implosion or just a change in loop inclination. In this paper, to demonstrate the reality of loop contractions in the global coronal dynamics, we present four events with the continuously contracting loops in an almost edge-on geometry from the perspective of SDO/AIA, which are free from the ambiguity caused by the projection effects, also supplemented by contemporary observations from STEREO for examination. In the wider context of observations, simulations and theories, we argue that the implosion conjecture is valid in interpreting these events. Furthermore, distinct properties of the events allow us to identify two physical categories of implosion. One type demonstrates a rapid contraction at the beginning of the flare impulsive phase, as magnetic free energy is removed rapidly by a filament eruption. The other type, which has no visible eruption, shows a continuous loop shrinkage during the entire flare impulsive phase, which we suggest shows the ongoing conversion of magnetic free energy in a coronal volume. Corresponding scenarios are described that can provide reasonable explanations for the observations. We also point out that implosions may be suppressed in cases when a heavily mass-loaded filament is involved, possibly serving as an alternative account for their observational rarity.
Enhanced damage resistance and novel defect structure of CrFeCoNi under in situ electron irradiation
DOE Office of Scientific and Technical Information (OSTI.GOV)
He, Mo -Rigen; Wang, Shuai; Jin, Ke
Defect production and growth in CrFeCoNi, a single-phase concentrated solid solution alloy, is characterized using in situ electron irradiation inside a transmission electron microscope operated at 400–1250 kV and 400 °C. All observed defects are interstitial-type, either elliptical Frank loops or polygonal (mostly rhombus) perfect loops. Both forms of loops in CrFeCoNi exhibit a sublinear power law of growth that is > 40 times slower than the linear defect growth in pure Ni. Lastly, this result shows how compositional complexity impacts the production of Frenkel pairs and the agglomeration of interstitials into loops, and, thus, enhances the radiation tolerance.
Enhanced damage resistance and novel defect structure of CrFeCoNi under in situ electron irradiation
He, Mo -Rigen; Wang, Shuai; Jin, Ke; ...
2016-07-25
Defect production and growth in CrFeCoNi, a single-phase concentrated solid solution alloy, is characterized using in situ electron irradiation inside a transmission electron microscope operated at 400–1250 kV and 400 °C. All observed defects are interstitial-type, either elliptical Frank loops or polygonal (mostly rhombus) perfect loops. Both forms of loops in CrFeCoNi exhibit a sublinear power law of growth that is > 40 times slower than the linear defect growth in pure Ni. Lastly, this result shows how compositional complexity impacts the production of Frenkel pairs and the agglomeration of interstitials into loops, and, thus, enhances the radiation tolerance.
Fluxoids configurations in finite superconducting networks
NASA Astrophysics Data System (ADS)
Sharon, Omri J.; Haham, Noam; Shaulov, Avner A.; Yeshurun, Yosef
2017-12-01
Analysis of superconducting ladders consisting of rectangular loops, yields an Ising like expression for the total energy of the ladders as a function of the loops vorticities and the applied magnetic field. This expression shows that fluxoids can be treated as repulsively interacting objects driven towards the ladder center by the applied field. Distinctive repulsive interactions between fluxoids are obtained depending on the ratio l between the loops length and the common width of adjacent loops. A 'short range' and a 'long range' interactions obtained for l ≳ 1 and l ≪ 1, respectively, give rise to remarkably different fluxoid configurations. The different configurations of fluxoids in different types of ladders are illustrated by simulations.
Non-planar one-loop Parke-Taylor factors in the CHY approach for quadratic propagators
NASA Astrophysics Data System (ADS)
Ahmadiniaz, Naser; Gomez, Humberto; Lopez-Arcos, Cristhiam
2018-05-01
In this work we have studied the Kleiss-Kuijf relations for the recently introduced Parke-Taylor factors at one-loop in the CHY approach, that reproduce quadratic Feynman propagators. By doing this, we were able to identify the non-planar one-loop Parke-Taylor factors. In order to check that, in fact, these new factors can describe non-planar amplitudes, we applied them to the bi-adjoint Φ3 theory. As a byproduct, we found a new type of graphs that we called the non-planar CHY-graphs. These graphs encode all the information for the subleading order at one-loop, and there is not an equivalent of these in the Feynman formalism.
NASA Astrophysics Data System (ADS)
Tanigawa, Hiroyasu; Katoh, Yutai; Kohyama, Akira
1995-08-01
Effects of applied stress on early stages of interstitial type Frank loop evolution were investigated by both numerical calculation and irradiation experiments. The final objective of this research is to propose a comprehensive model of complex stress effects on microstructural evolution under various conditions. In the experimental part of this work, the microstructural analysis revealed that the differences in resolved normal stress caused those in the nucleation rates of Frank loops on {111} crystallographic family planes, and that with increasing external applied stress the total nucleation rate of Frank loops was increased. A numerical calculation was carried out primarily to evaluate the validity of models of stress effects on nucleation processes of Frank loop evolution. The calculation stands on rate equuations which describe evolution of point defects, small points defect clusters and Frank loops. The rate equations of Frank loop evolution were formulated for {111} planes, considering effects of resolved normal stress to clustering processes of small point defects and growth processes of Frank loops, separately. The experimental results and the predictions from the numerical calculation qualitatively coincided well with each other.
NASA Astrophysics Data System (ADS)
Yao, Z.; Jenkins, M. L.; Hernández-Mayoral, M.; Kirk, M. A.
2010-12-01
A transition is reported in the dislocation microstructure of pure Fe produced by heavy-ion irradiation of thin foils, which took place between irradiation temperatures (T irr) of 300°C and 500°C. At T irr ≤ 400°C, the microstructure was dominated by round or irregular non-edge dislocation loops of interstitial nature and with Burgers vectors b = ½ ⟨111⟩, although interstitial ⟨100⟩ loops were also present; at 500°C only rectilinear pure-edge ⟨100⟩ loops occurred. At intermediate temperatures there was a gradual transition between the two types of microstructure. At temperatures just below 500°C, mobile ½⟨111⟩ loops were seen to be subsumed by sessile ⟨100⟩ loops. A possible explanation of these observations is given.
Loop transfer recovery for general nonminimum phase discrete time systems. I - Analysis
NASA Technical Reports Server (NTRS)
Chen, Ben M.; Saberi, Ali; Sannuti, Peddapullaiah; Shamash, Yacov
1992-01-01
A complete analysis of loop transfer recovery (LTR) for general nonstrictly proper, not necessarily minimum phase discrete time systems is presented. Three different observer-based controllers, namely, `prediction estimator' and full or reduced-order type `current estimator' based controllers, are used. The analysis corresponding to all these three controllers is unified into a single mathematical framework. The LTR analysis given here focuses on three fundamental issues: (1) the recoverability of a target loop when it is arbitrarily given, (2) the recoverability of a target loop while taking into account its specific characteristics, and (3) the establishment of necessary and sufficient conditions on the given system so that it has at least one recoverable target loop transfer function or sensitivity function. Various differences that arise in LTR analysis of continuous and discrete systems are pointed out.
Mini-filament Eruption as the Initiation of a Jet along Coronal Loops
NASA Astrophysics Data System (ADS)
Hong, Junchao; Jiang, Yunchun; Yang, Jiayan; Yang, Bo; Xu, Zhe; Xiang, Yongyuan
2016-10-01
Minifilament eruptions (MFEs) and coronal jets are different types of solar small-scale explosive events. We report an MFE observed at the New Vacuum Solar Telescope (NVST). As seen in the NVST Hα images, during the rising phase, the minifilament erupts outward orthogonally to its length, accompanied with a flare-like brightening at the bottom. Afterward, dark materials are found to possibly extend along the axis of the expanded filament body. The MFE is analogous to large filament eruptions. However, a simultaneous observation of the Solar Dynamics Observatory shows that a jet is initiated and flows out along nearby coronal loops during the rising phase of the MFE. Meanwhile, small hot loops, which connect the original eruptive site of the minifilament to the footpoints of the coronal loops, are formed successively. A differential emission measure analysis demonstrates that, on the top of the new small loops, a hot cusp structure exists. We conjecture that the magnetic fields of the MFE interact with magnetic fields of the coronal loops. This interaction is interpreted as magnetic reconnection that produces the jet and the small hot loops.
R-loops: targets for nuclease cleavage and repeat instability.
Freudenreich, Catherine H
2018-01-11
R-loops form when transcribed RNA remains bound to its DNA template to form a stable RNA:DNA hybrid. Stable R-loops form when the RNA is purine-rich, and are further stabilized by DNA secondary structures on the non-template strand. Interestingly, many expandable and disease-causing repeat sequences form stable R-loops, and R-loops can contribute to repeat instability. Repeat expansions are responsible for multiple neurodegenerative diseases, including Huntington's disease, myotonic dystrophy, and several types of ataxias. Recently, it was found that R-loops at an expanded CAG/CTG repeat tract cause DNA breaks as well as repeat instability (Su and Freudenreich, Proc Natl Acad Sci USA 114, E8392-E8401, 2017). Two factors were identified as causing R-loop-dependent breaks at CAG/CTG tracts: deamination of cytosines and the MutLγ (Mlh1-Mlh3) endonuclease, defining two new mechanisms for how R-loops can generate DNA breaks (Su and Freudenreich, Proc Natl Acad Sci USA 114, E8392-E8401, 2017). Following R-loop-dependent nicking, base excision repair resulted in repeat instability. These results have implications for human repeat expansion diseases and provide a paradigm for how RNA:DNA hybrids can cause genome instability at structure-forming DNA sequences. This perspective summarizes mechanisms of R-loop-induced fragility at G-rich repeats and new links between DNA breaks and repeat instability.
van Dongen, M J; Mooren, M M; Willems, E F; van der Marel, G A; van Boom, J H; Wijmenga, S S; Hilbers, C W
1997-01-01
The three-dimensional structure of the hairpin formed by d(ATCCTA-GTTA-TAGGAT) has been determined by means of two-dimensional NMR studies, distance geometry and molecular dynamics calculations. The first and the last residues of the tetraloop of this hairpin form a sheared G-A base pair on top of the six Watson-Crick base pairs in the stem. The glycosidic torsion angles of the guanine and adenine residues in the G-A base pair reside in the anti and high- anti domain ( approximately -60 degrees ) respectively. Several dihedral angles in the loop adopt non-standard values to accommodate this base pair. The first and second residue in the loop are stacked in a more or less normal helical fashion; the fourth loop residue also stacks upon the stem, while the third residue is directed away from the loop region. The loop structure can be classified as a so-called type-I loop, in which the bases at the 5'-end of the loop stack in a continuous fashion. In this situation, loop stability is unlikely to depend heavily on the nature of the unpaired bases in the loop. Moreover, the present study indicates that the influence of the polarity of a closing A.T pair is much less significant than that of a closing C.G base pair. PMID:9092659
Instabilities encountered during heat transfer to a supercritical fluid
NASA Technical Reports Server (NTRS)
Cornelius, A. J.
1969-01-01
Investigation was made of the unstable behavior of a heat-transfer loop operating at a supercritical pressure. Natural convection operation of the loop, with observations on acoustic and slow oscillatory behavior, was emphasized during testing. The basic cause of both types of behavior appeared to originate in the heated boundary layer.
Cross Slip of Dislocation Loops in GaN Under Shear
2014-03-01
methodology 2.1 Discrete dislocation dynamic ( DDD ) simula- tions In this work, we employ a modified version of the ParaDiS code [15, 16]. First a...plane. 4 Conclusions The cross slip mechanisms of different dislocation loops have been studied via DDD simulations using the type <a> active
Liu, Ya-min; Qin, Hao; Zhang, Bo; Wang, Yu-jing; Feng, Jun; Wu, Xiang
2016-02-01
Both open and closed loop self-expandable stents were used in carotid artery stenting (CAS) for carotid bifurcation stenosis. We sought to compare the efficacy of two types of stents in CAS. The data of 212 patients treated with CAS (42 and 170 cases implanted with closed and open loop stents, respectively) for carotid bifurcation stenosis and distal filtration protection devices were retrospectively analyzed. Between closed and open loop stents, there were no significant differences in hospitalization duration, NIHSS score before and after the treatment, stenosis at 12th month, and cumulative incidence of primary endpoint events within 30 days or from the 31st day to the 12th month; while there were significant differences in hemodynamic changes and rate of difficulty in recycling distal filtration protection devices. Use of open vs. closed loop stents for carotid bifurcation stenosis seems to be associated with similar incidence of complications, except for greater rate of hemodynamic changes and lower rate of difficulty in recycling the distal filtration protection devices.
Dynamic Consequences of Mutation of Tryptophan 215 in Thrombin.
Peacock, Riley B; Davis, Jessie R; Markwick, Phineus R L; Komives, Elizabeth A
2018-05-08
Thrombin normally cleaves fibrinogen to promote coagulation; however, binding of thrombomodulin to thrombin switches the specificity of thrombin toward protein C, triggering the anticoagulation pathway. The W215A thrombin mutant was reported to have decreased activity toward fibrinogen without significant loss of activity toward protein C. To understand how mutation of Trp215 may alter thrombin specificity, hydrogen-deuterium exchange experiments (HDXMS), accelerated molecular dynamics (AMD) simulations, and activity assays were carried out to compare the dynamics of Trp215 mutants with those of wild type (WT) thrombin. Variation in NaCl concentration had no detectable effect on the sodium-binding (220s CT ) loop, but appeared to affect other surface loops. Trp215 mutants showed significant increases in amide exchange in the 170s CT loop consistent with a loss of H-bonding in this loop identified by the AMD simulations. The W215A thrombin showed increased amide exchange in the 220s CT loop and in the N-terminus of the heavy chain. The AMD simulations showed that a transient conformation of the W215A thrombin has a distorted catalytic triad. HDXMS experiments revealed that mutation of Phe227, which engages in a π-stacking interaction with Trp215, also caused significantly increased amide exchange in the 170s CT loop. Activity assays showed that only the F227V mutant had wild type catalytic activity, whereas all other mutants showed markedly lower activity. Taken together, the results explain the reduced pro-coagulant activity of the W215A mutant and demonstrate the allosteric connection between Trp215, the sodium-binding loop, and the active site.
An RNA internal loop acts as a hinge to facilitate ribozyme folding and catalysis.
Szewczak, A A; Cech, T R
1997-01-01
RNA molecules commonly consist of helical regions separated by internal loops, and in many cases these internal loops have been found to assume stable structures. We have examined the function and dynamics of an internal loop, J5/5a, that joins the two halves of the P4-P6 domain of the Tetrahymena self-splicing group I intron. P4-P6 RNAs with mutations in the J5/5a region showed nondenaturing gel electrophoretic mobilities and levels of Fe(II)-EDTA cleavage protection intermediate between those of wild-type RNA and a mutant incapable of folding into the native P4-P6 tertiary structure. Mutants with the least structured J5/5a loops behaved the most like wild-type P4-P6, and required smaller amounts of Mg2+ to rescue folding. The activity of reconstituted introns containing mutant P4-P6 RNAs correlated similarly with the nature of the J5/5a mutation. Our results suggest that, in solution, the P4-P6 RNA is in a two-state equilibrium between folded and unfolded states. We conclude that this internal loop mainly acts as a flexible hinge, allowing the coaxially stacked helical regions on either side of it to interact via specific tertiary contacts. To a lesser extent, the specific bases within the loop contribute to folding. Furthermore, it is crucial that the junction remain unstructured in the unfolded state. These conclusions cannot be derived from a simple examination of the P4-P6 crystal structure (Cate JH et al., 1996, Science 273:1678-1685), showing once again that structure determination must be supplemented with mutational and thermodynamic analysis to provide a complete picture of a folded macromolecule. PMID:9257643
Kumar, Amit; Park, HaJeung; Fang, Pengfei; Parkesh, Raman; Guo, Min; Nettles, Kendall W.; Disney, Matthew D.
2011-01-01
RNA internal loops often display a variety of conformations in solution. Herein, we visualize conformational heterogeneity in the context of the 5′CUG/3′GUC repeat motif present in the RNA that causes myotonic dystrophy type 1 (DM1). Specifically, two crystal structures are disclosed of a model DM1 triplet repeating construct, 5′r(UUGGGC(CUG)3GUCC)2, refined to 2.20 Å and 1.52 Å resolution. Here, differences in orientation of the 5′ dangling UU end between the two structures induce changes in the backbone groove width, which reveals that non-canonical 1×1 nucleotide UU internal loops can display an ensemble of pairing conformations. In the 2.20 Å structure, CUGa, the 5′UU forms one hydrogen-bonded pairs with a 5′UU of a neighboring helix in the unit cell to form a pseudo-infinite helix. The central 1×1 nucleotide UU internal loop has no hydrogen bonds, while the terminal 1×1 nucleotide UU internal loops each form a one hydrogen-bonded pair. In the 1.52 Å structure, CUGb, the 5′ UU dangling end is tucked into the major groove of the duplex. While the canonical paired bases show no change in base pairing, in CUGb the terminal 1×1 nucleotide UU internal loops form now two hydrogen-bonded pairs. Thus, the shift in major groove induced by the 5′UU dangling end alters non-canonical base patterns. Collectively, these structures indicate that 1×1 nucleotide UU internal loops in DM1 may sample multiple conformations in vivo. This observation has implications for the recognition of this RNA, and other repeating transcripts, by protein and small molecule ligands. PMID:21988728
Kumar, Amit; Park, HaJeung; Fang, Pengfei; Parkesh, Raman; Guo, Min; Nettles, Kendall W; Disney, Matthew D
2011-11-15
RNA internal loops often display a variety of conformations in solution. Herein, we visualize conformational heterogeneity in the context of the 5'CUG/3'GUC repeat motif present in the RNA that causes myotonic dystrophy type 1 (DM1). Specifically, two crystal structures of a model DM1 triplet repeating construct, 5'r[UUGGGC(CUG)(3)GUCC](2), refined to 2.20 and 1.52 Å resolution are disclosed. Here, differences in the orientation of the 5' dangling UU end between the two structures induce changes in the backbone groove width, which reveals that noncanonical 1 × 1 nucleotide UU internal loops can display an ensemble of pairing conformations. In the 2.20 Å structure, CUGa, the 5' UU forms a one hydrogen-bonded pair with a 5' UU of a neighboring helix in the unit cell to form a pseudoinfinite helix. The central 1 × 1 nucleotide UU internal loop has no hydrogen bonds, while the terminal 1 × 1 nucleotide UU internal loops each form a one-hydrogen bond pair. In the 1.52 Å structure, CUGb, the 5' UU dangling end is tucked into the major groove of the duplex. While the canonically paired bases show no change in base pairing, in CUGb the terminal 1 × 1 nucleotide UU internal loops now form two hydrogen-bonded pairs. Thus, the shift in the major groove induced by the 5' UU dangling end alters noncanonical base patterns. Collectively, these structures indicate that 1 × 1 nucleotide UU internal loops in DM1 may sample multiple conformations in vivo. This observation has implications for the recognition of this RNA, and other repeating transcripts, by protein and small molecule ligands.
DOE Office of Scientific and Technical Information (OSTI.GOV)
Kumar, Amit; Park, HaJeung; Fang, Pengfei
2012-03-27
RNA internal loops often display a variety of conformations in solution. Herein, we visualize conformational heterogeneity in the context of the 5'CUG/3'GUC repeat motif present in the RNA that causes myotonic dystrophy type 1 (DM1). Specifically, two crystal structures of a model DM1 triplet repeating construct, 5'r[{und UU}GGGC(C{und U}G){sub 3}GUCC]{sub 2}, refined to 2.20 and 1.52 {angstrom} resolution are disclosed. Here, differences in the orientation of the 5' dangling UU end between the two structures induce changes in the backbone groove width, which reveals that noncanonical 1 x 1 nucleotide UU internal loops can display an ensemble of pairing conformations.more » In the 2.20 {angstrom} structure, CUGa, the 5' UU forms a one hydrogen-bonded pair with a 5' UU of a neighboring helix in the unit cell to form a pseudoinfinite helix. The central 1 x 1 nucleotide UU internal loop has no hydrogen bonds, while the terminal 1 x 1 nucleotide UU internal loops each form a one-hydrogen bond pair. In the 1.52 {angstrom} structure, CUGb, the 5' UU dangling end is tucked into the major groove of the duplex. While the canonically paired bases show no change in base pairing, in CUGb the terminal 1 x 1 nucleotide UU internal loops now form two hydrogen-bonded pairs. Thus, the shift in the major groove induced by the 5' UU dangling end alters noncanonical base patterns. Collectively, these structures indicate that 1 x 1 nucleotide UU internal loops in DM1 may sample multiple conformations in vivo. This observation has implications for the recognition of this RNA, and other repeating transcripts, by protein and small molecule ligands.« less
Hotra, Adam; Suter, Manuel; Biuković, Goran; Ragunathan, Priya; Kundu, Subhashri; Dick, Thomas; Grüber, Gerhard
2016-05-01
The F1 FO -ATP synthase is one of the enzymes that is essential to meet the energy requirement of both the proliferating aerobic and hypoxic dormant stages of the life cycle of mycobacteria. Most F-ATP synthases consume ATP in the α3 :β3 headpiece to drive the γ subunit, which couples ATP cleavage with proton pumping in the c ring of FO via the bottom of the γ subunit. ATPase-driven H(+) pumping is latent in mycobacteria. The presence of a unique 14 amino acid residue loop of the mycobacterial γ subunit has been described and aligned in close vicinity to the c-ring loop Priya R et al. (2013) J Bioenerg Biomembr 45, 121-129 Here, we used inverted membrane vesicles (IMVs) of fast-growing Mycobacterium smegmatis and a variety of covalent and non-covalent inhibitors to characterize the ATP hydrolysis activity of the F-ATP synthase inside IMVs. These vesicles formed a platform to investigate the function of the unique mycobaterial γ loop by deleting the respective loop-encoding sequence (γ166-179 ) in the genome of M. smegmatis. ATP hydrolysis-driven H(+) pumping was observed in IMVs containing the Δγ166-179 mutant protein but not for IMVs containing the wild-type F-ATP synthase. In addition, when compared to the wild-type enzyme, IMVs containing the Δγ166-179 mutant protein showed increased ATP cleavage and lower levels of ATP synthesis, demonstrating that the loop affects ATPase activity, ATPase-driven H(+) pumping and ATP synthesis. These results further indicate that the loop may affect coupling of ATP hydrolysis and synthesis in a different mode. © 2016 Federation of European Biochemical Societies.
Star-Forming Regions in Orion as a Dust Evolution Laboratory
NASA Astrophysics Data System (ADS)
Wiebe, D.; Murga, M.; Sivkova, E.
2017-06-01
Star-forming regions (SFR) represent a convenient opportunity to study various processes related both to dust growth and to dust destruction. While extragalactic SFRs allow considering these processes in a wide range of metallicities, UV field intensities, etc., the Orion star-forming complex opens up a possibility to observe dust evolution with an unprecedented angular resolution. We review various observations related to dust evolution in some most prominent Orion regions, paying special attention to organic dust evolution, and introduce a new model of organic dust evolution.
Stepwise Loop Insertion Strategy for Active Site Remodeling to Generate Novel Enzyme Functions.
Hoque, Md Anarul; Zhang, Yong; Chen, Liuqing; Yang, Guangyu; Khatun, Mst Afroza; Chen, Haifeng; Hao, Liu; Feng, Yan
2017-05-19
The remodeling of active sites to generate novel biocatalysts is an attractive and challenging task. We developed a stepwise loop insertion strategy (StLois), in which randomized residue pairs are inserted into active site loops. The phosphotriesterase-like lactonase from Geobacillus kaustophilus (GkaP-PLL) was used to investigate StLois's potential for changing enzyme function. By inserting six residues into active site loop 7, the best variant ML7-B6 demonstrated a 16-fold further increase in catalytic efficiency toward ethyl-paraoxon compared with its initial template, that is a 609-fold higher, >10 7 fold substrate specificity shift relative to that of wild-type lactonase. The remodeled variants displayed 760-fold greater organophosphate hydrolysis activity toward the organophosphates parathion, diazinon, and chlorpyrifos. Structure and docking computations support the source of notably inverted enzyme specificity. Considering the fundamental importance of active site loops, the strategy has potential for the rapid generation of novel enzyme functions by loop remodeling.
Joshi, Harshad; Cheluvaraja, Srinath; Somogyi, Endre; Brown, Darron R; Ortoleva, Peter
2011-11-28
Immunogenicity varies between the human papillomavirus (HPV) L1 monomer assemblies of various sizes (e.g., monomers, pentamers or whole capsids). The hypothesis that this can be attributed to the intensity of fluctuations of important loops containing neutralizing epitopes for the various assemblies is proposed for HPV L1 assemblies. Molecular dynamics simulations were utilized to begin testing this hypothesis. Fluctuations of loops that contain critical neutralizing epitopes (especially FG loop) were quantified via root-mean-square fluctuation and features in the frequency spectrum of dynamic changes in loop conformation. If this fluctuation-immunogenicity hypothesis is a universal aspect of immunogenicity (i.e., immune system recognition of an epitope within a loop is more reliable when it is presented via a more stable delivery structure), then fluctuation measures can serve as one predictor of immunogenicity as part of a computer-aided vaccine design strategy. Copyright © 2011 Elsevier Ltd. All rights reserved.
Portable battery-free charger for radiation dosimeters
Manning, Frank W.
1984-01-01
This invention is a novel portable charger for dosimeters of the electrometer type. The charger does not require batteries or piezoelectric crystals and is of rugged construction. In a preferred embodiment, the charge includes a housing which carries means for mounting a dosimeter to be charged. The housing also includes contact means for impressing a charging voltage across the mounted dosimeter. Also, the housing carries a trigger for operating a charging system mounted in the housing. The charging system includes a magnetic loop including a permanent magnet for establishing a magnetic field through the loop. A segment of the loop is coupled to the trigger for movement thereby to positions opening and closing the loop. A coil inductively coupled with the loop generates coil-generated voltage pulses when the trigger is operated to open and close the loop. The charging system includes an electrical circuit for impressing voltage pulses from the coil across a capacitor for integrating the pulses and applying the resulting integrated voltage across the above-mentioned contact means for charging the dosimeter.
NASA Technical Reports Server (NTRS)
Broussard, J. R.; Halyo, N.
1984-01-01
This report contains the development of a digital outer-loop three dimensional radio navigation (3-D RNAV) flight control system for a small commercial jet transport. The outer-loop control system is designed using optimal stochastic limited state feedback techniques. Options investigated using the optimal limited state feedback approach include integrated versus hierarchical control loop designs, 20 samples per second versus 5 samples per second outer-loop operation and alternative Type 1 integration command errors. Command generator tracking techniques used in the digital control design enable the jet transport to automatically track arbitrary curved flight paths generated by waypoints. The performance of the design is demonstrated using detailed nonlinear aircraft simulations in the terminal area, frequency domain multi-input sigma plots, frequency domain single-input Bode plots and closed-loop poles. The response of the system to a severe wind shear during a landing approach is also presented.
Alteration of the mode of antibacterial action of a defensin by the amino-terminal loop substitution
DOE Office of Scientific and Technical Information (OSTI.GOV)
Gao, Bin; Zhu, Shunyi, E-mail: Zhusy@ioz.ac.cn
Highlights: Black-Right-Pointing-Pointer Al-M is an engineered fungal defensin with the n-loop of an insect defensin. Black-Right-Pointing-Pointer Al-M adopts a native defensin-like structure with high antibacterial potency. Black-Right-Pointing-Pointer Al-M kills bacteria through a membrane disruptive mechanism. Black-Right-Pointing-Pointer This work sheds light on the functional evolution of CS{alpha}{beta}-type defensins. -- Abstract: Ancient invertebrate-type and classical insect-type defensins (AITDs and CITDs) are two groups of evolutionarily related antimicrobial peptides (AMPs) that adopt a conserved cysteine-stabilized {alpha}-helical and {beta}-sheet (CS{alpha}{beta}) fold with a different amino-terminal loop (n-loop) size and diverse modes of antibacterial action. Although they both are identified as inhibitors of cell wallmore » biosynthesis, only CITDs evolved membrane disruptive ability by peptide oligomerization to form pores. To understand how this occurred, we modified micasin, a fungus-derived AITDs with a non-membrane disruptive mechanism, by substituting its n-loop with that of an insect-derived CITDs. After air oxidization, the synthetic hybrid defensin (termed Al-M) was structurally identified by circular dichroism (CD) and functionally evaluated by antibacterial and membrane permeability assays and electronic microscopic observation. Results showed that Al-M folded into a native-like defensin structure, as determined by its CD spectrum that is similar to that of micasin. Al-M was highly efficacious against the Gram-positive bacterium Bacillus megaterium with a lethal concentration of 1.76 {mu}M. As expected, in contrast to micasin, Al-M killed the bacteria through a membrane disruptive mechanism of action. The alteration in modes of action supports a key role of the n-loop extension in assembling functional surface of CITDs for membrane disruption. Our work provides mechanical evidence for evolutionary relationship between AITDs and CITDs.« less
Ouedraogo, Daniel; Souffrant, Michael; Vasquez, Sheena; Hamelberg, Donald; Gadda, Giovanni
2017-05-16
Mobile loops located at the active site entrance in enzymes often participate in conformational changes required to shield the reaction from bulk solvent, to control the access of the substrate to the active site, and to position residues for substrate binding and catalysis. In d-arginine dehydrogenase from Pseudomonas aeruginosa (PaDADH), previous crystallographic data suggested that residues 45-47 in the FAD-binding domain and residues 50-56 in the substrate-binding domain in loop L1 could adopt two distinct conformations. In this study, we have used molecular dynamics, kinetics, and fluorescence spectroscopy on the S45A and A46G enzyme variants of PaDADH to investigate the impact of mutations in loop L1 on the catalytic function of the enzyme. Molecular dynamics showed that the mutant enzymes have probabilities of being in open conformations that are higher than that of wild-type PaDADH of loop L1, yielding an increased level of solvent exposure of the active site. In agreement, the flavin fluorescence intensity was ∼2-fold higher in the S45A and A46G enzymes than in wild-type PaDADH, with a 9 nm bathochromic shift of the emission band. In the variant enzymes, the k cat /K m values with d-arginine were ∼13-fold lower than in wild-type PaDADH. Moreover, the pH profiles for the k cat value with d-arginine showed a hollow, consistent with restricted proton movements in catalysis, and no saturation was achieved with the alternate substrate d-leucine in the reductive half-reaction of the variant enzymes. Taken together, the computational and experimental data are consistent with the dynamics of loop L1 being important for substrate capture and catalysis in PaDADH.
Patel, Sunita; Sasidhar, Yellamraju U
2007-10-01
Recently we performed molecular dynamics (MD) simulations on the folding of the hairpin peptide DTVKLMYKGQPMTFR from staphylococcal nuclease in explicit water. We found that the peptide folds into a hairpin conformation with native and nonnative hydrogen-bonding patterns. In all the folding events observed in the folding of the hairpin peptide, loop formation involving the region YKGQP was an important event. In order to trace the origins of the loop propensity of the sequence YKGQP, we performed MD simulations on the sequence starting from extended, polyproline II and native type I' turn conformations for a total simulation length of 300 ns, using the GROMOS96 force field under constant volume and temperature (NVT) conditions. The free-energy landscape of the peptide YKGQP shows minima corresponding to loop conformation with Tyr and Pro side-chain association, turn and extended conformational forms, with modest free-energy barriers separating the minima. To elucidate the role of Gly in facilitating loop formation, we also performed MD simulations of the mutated peptide YKAQP (Gly --> Ala mutation) under similar conditions starting from polyproline II conformation for 100 ns. Two minima corresponding to bend/turn and extended conformations were observed in the free-energy landscape for the peptide YKAQP. The free-energy barrier between the minima in the free-energy landscape of the peptide YKAQP was also modest. Loop conformation is largely sampled by the YKGQP peptide, while extended conformation is largely sampled by the YKAQP peptide. We also explain why the YKGQP sequence samples type II turn conformation in these simulations, whereas the sequence as part of the hairpin peptide DTVKLMYKGQPMTFR samples type I' turn conformation both in the X-ray crystal structure and in our earlier simulations on the folding of the hairpin peptide. We discuss the implications of our results to the folding of the staphylococcal nuclease. Copyright (c) 2007 European Peptide Society and John Wiley & Sons, Ltd.
MHD Modelling of Coronal Loops: Injection of High-Speed Chromospheric Flows
NASA Technical Reports Server (NTRS)
Petralia, A.; Reale, F.; Orlando, S.; Klimchuk, J. A.
2014-01-01
Context. Observations reveal a correspondence between chromospheric type II spicules and bright upward-moving fronts in the corona observed in the extreme-ultraviolet (EUV) band. However, theoretical considerations suggest that these flows are probably not the main source of heating in coronal magnetic loops. Aims. We investigate the propagation of high-speed chromospheric flows into coronal magnetic flux tubes and the possible production of emission in the EUV band. Methods. We simulated the propagation of a dense 104 K chromospheric jet upward along a coronal loop by means of a 2D cylindrical MHD model that includes gravity, radiative losses, thermal conduction, and magnetic induction. The jet propagates in a complete atmosphere including the chromosphere and a tenuous cool (approximately 0.8 MK) corona, linked through a steep transition region. In our reference model, the jet initial speed is 70 km per second, its initial density is 10(exp 11) per cubic centimeter, and the ambient uniform magnetic field is 10 G. We also explored other values of jet speed and density in 1D and different magnetic field values in 2D, as well as the jet propagation in a hotter (approximately 1.5 MK) background loop. Results. While the initial speed of the jet does not allow it to reach the loop apex, a hot shock-front develops ahead of it and travels to the other extreme of the loop. The shock front compresses the coronal plasma and heats it to about 10(exp 6) K. As a result, a bright moving front becomes visible in the 171 Angstrom channel of the SDO/AIA mission. This result generally applies to all the other explored cases, except for the propagation in the hotter loop. Conclusions. For a cool, low-density initial coronal loop, the post-shock plasma ahead of upward chromospheric flows might explain at least part of the observed correspondence between type II spicules and EUV emission excess.
NASA Technical Reports Server (NTRS)
Day, T.; Farinas, A. D.; Byer, R. L.
1990-01-01
A type II 1.06-micron optical phase-locked loop (OPLL) for use in a coherent homodyne receiver is discussed. Diode-laser-pumped solid-state lasers are used for both the local oscillator and transmitter, because their phase noise is significantly lower than that of diode lasers. Closed-loop RMS phase noise of less than 12 mrad (0.69 deg) is achieved, and modulation-demodulation in bulk modulators at rates from 20 kHz to 20 MHz with less than 19 deg of modulation depth is demonstrated.
DOE Office of Scientific and Technical Information (OSTI.GOV)
Shim, Hyunjin; Im, Myungshin; Jeon, Yiseul
We present spectra of 1796 sources selected in the AKARI North Ecliptic Pole Wide Survey field, obtained with MMT/Hectospec and WIYN/Hydra, for which we measure 1645 redshifts. We complemented the generic flux-limited spectroscopic surveys at 11 {mu}m and 15 {mu}m, with additional sources selected based on the MIR and optical colors. In MMT/Hectospec observations, the redshift identification rates are {approx}80% for objects with R < 21.5 mag. On the other hand, in WIYN/Hydra observations, the redshift identification rates are {approx}80% at R magnitudes brighter than 19 mag. The observed spectra were classified through the visual inspection or from the linemore » diagnostics. We identified 1128 star-forming or absorption-line-dominated galaxies, 198 Type-1 active galactic nuclei (AGNs), 8 Type-2 AGNs, 121 Galactic stars, and 190 spectra in unknown category due to low signal-to-noise ratio. The spectra were flux-calibrated but to an accuracy of 0.1-0.18 dex for most of the targets and worse for the remainder. We derive star formation rates (SFRs) from the mid-infrared fluxes or from the optical emission lines, showing that our sample spans an SFR range of 0.1 to a few hundred M{sub Sun} yr{sup -1}. We find that the extinction inferred from the difference between the IR and optical SFR increases as the IR luminosity increases but with a large scatter.« less
Stephens, Robert F.; Guan, W.; Zhorov, Boris S.; Spafford, J. David
2015-01-01
How nature discriminates sodium from calcium ions in eukaryotic channels has been difficult to resolve because they contain four homologous, but markedly different repeat domains. We glean clues from analyzing the changing pore region in sodium, calcium and NALCN channels, from single-cell eukaryotes to mammals. Alternative splicing in invertebrate homologs provides insights into different structural features underlying calcium and sodium selectivity. NALCN generates alternative ion selectivity with splicing that changes the high field strength (HFS) site at the narrowest level of the hourglass shaped pore where the selectivity filter is located. Alternative splicing creates NALCN isoforms, in which the HFS site has a ring of glutamates contributed by all four repeat domains (EEEE), or three glutamates and a lysine residue in the third (EEKE) or second (EKEE) position. Alternative splicing provides sodium and/or calcium selectivity in T-type channels with extracellular loops between S5 and P-helices (S5P) of different lengths that contain three or five cysteines. All eukaryotic channels have a set of eight core cysteines in extracellular regions, but the T-type channels have an infusion of 4–12 extra cysteines in extracellular regions. The pattern of conservation suggests a possible pairing of long loops in Domains I and III, which are bridged with core cysteines in NALCN, Cav, and Nav channels, and pairing of shorter loops in Domains II and IV in T-type channel through disulfide bonds involving T-type specific cysteines. Extracellular turrets of increasing lengths in potassium channels (Kir2.2, hERG, and K2P1) contribute to a changing landscape above the pore selectivity filter that can limit drug access and serve as an ion pre-filter before ions reach the pore selectivity filter below. Pairing of extended loops likely contributes to the large extracellular appendage as seen in single particle electron cryo-microscopy images of the eel Nav1 channel. PMID:26042044
Regulation of epidermal cell fate in Arabidopsis roots: the importance of multiple feedback loops
Schiefelbein, John; Huang, Ling; Zheng, Xiaohua
2014-01-01
The specification of distinct cell types in multicellular organisms is accomplished via establishment of differential gene expression. A major question is the nature of the mechanisms that establish this differential expression in time and space. In plants, the formation of the hair and non-hair cell types in the root epidermis has been used as a model to understand regulation of cell specification. Recent findings show surprising complexity in the number and the types of regulatory interactions between the multiple transcription factor genes/proteins influencing root epidermis cell fate. Here, we describe this regulatory network and the importance of the multiple feedback loops for its establishment and maintenance. PMID:24596575
R 4 couplings in M- and type II theories on Calabi-Yau spaces
NASA Astrophysics Data System (ADS)
Antoniadis, I.; Feffara, S.; Minasian, R.; Narain, K. S.
1997-02-01
We discuss several implications of R 4 couplings in M-theory when compactified on Calabi-Yau (CY) manifolds. In particular, these couplings can be predicted by supersymmetry from the mixed gauge-gravitational Chem-Simons couplings in five dimensions and are related to the one-loop holomorphic anomaly in four-dimensional N = 2 theories. We find a new contribution to the Einstein term in five dimensions proportional to the Euler number of the internal CY threefold, which corresponds to a one-loop correction of the hypermultiplet geometry. This correction is reproduced by a direct computation in type 11 string theories. Finally, we discuss a universal non-perturbative correction to the type IIB hyper-metric.
Calculating massive 3-loop graphs for operator matrix elements by the method of hyperlogarithms
NASA Astrophysics Data System (ADS)
Ablinger, Jakob; Blümlein, Johannes; Raab, Clemens; Schneider, Carsten; Wißbrock, Fabian
2014-08-01
We calculate convergent 3-loop Feynman diagrams containing a single massive loop equipped with twist τ=2 local operator insertions corresponding to spin N. They contribute to the massive operator matrix elements in QCD describing the massive Wilson coefficients for deep-inelastic scattering at large virtualities. Diagrams of this kind can be computed using an extended version of the method of hyperlogarithms, originally being designed for massless Feynman diagrams without operators. The method is applied to Benz- and V-type graphs, belonging to the genuine 3-loop topologies. In case of the V-type graphs with five massive propagators, new types of nested sums and iterated integrals emerge. The sums are given in terms of finite binomially and inverse binomially weighted generalized cyclotomic sums, while the 1-dimensionally iterated integrals are based on a set of ∼30 square-root valued letters. We also derive the asymptotic representations of the nested sums and present the solution for N∈C. Integrals with a power-like divergence in N-space ∝aN,a∈R,a>1, for large values of N emerge. They still possess a representation in x-space, which is given in terms of root-valued iterated integrals in the present case. The method of hyperlogarithms is also used to calculate higher moments for crossed box graphs with different operator insertions.
Hoshino, Taro; Ookawara, Susumu; Miyazawa, Haruhisa; Ito, Kiyonori; Ueda, Yuichiro; Kaku, Yoshio; Hirai, Keiji; Mori, Honami; Yoshida, Izumi; Tabei, Kaoru
2015-04-01
Type 2 diabetic kidney disease (DKD) is frequently accompanied by uncontrollable hypertension due to the sodium sensitivity inherent in DKD and to diuretic-resistant edema. In general, diuretics are effective in treating this condition, but thiazide diuretics are thought to be innocuous in advanced chronic kidney disease (CKD). We examined the renoprotective effects of combination therapy with thiazides and loop diuretics in type 2 DKD patients with CKD stage G4 or G5. This study included 11 patients with type 2 DKD and an estimated glomerular filtration rate (eGFR) <30 mL/min/1.73 m(2) who were suffering from severe edema even with loop diuretics. Each patient received additional hydrochlorothiazide (HCTZ) therapy, which was continued for more than 12 months. We examined clinical parameters including blood pressure (BP), proteinuria, and eGFR before and after the addition of HCTZ. Patients received a 13.6 ± 3.8 mg/day dose of HCTZ in addition to loop diuretics (azosemide: 120 mg/day in 6 cases, 60 mg/day in 3 cases and furosemide: 80 mg/day in 1 case, 120 mg/day in 1 case). Side effects of HCTZ were not observed in all patients. After the addition of HCTZ therapy, systolic and diastolic blood pressures (S-BP, D-BP) as well as proteinuria significantly decreased (S-BP: at 6 months, p < 0.05 and 12 months, p < 0.01 vs. 0 month, D-BP: at 12 months, p < 0.05 vs. 0 month, proteinuria: at 6 months, p < 0.05 and 12 months, p < 0.01 vs. 0 month). The annual decline in eGFR was not significantly different before and after HCTZ therapy (-7.7 ± 8.5 and -8.4 ± 4.8 mL/min/1.73 m(2)/year, respectively). Our findings suggest that the combination of HCTZ and loop diuretics improves BP levels, and decreases proteinuria even in advanced stage type 2 DKD patients with severe edema. The addition of HCTZ therapy was not found to negatively affect the change in eGFR in the present study.
He, Haijun; Shao, Liyang; Qian, Heng; Zhang, Xinpu; Liang, Jiawei; Luo, Bin; Pan, Wei; Yan, Lianshan
2017-03-20
A novel demodulation method for Sagnac loop interferometer based sensor has been proposed and demonstrated, by unwrapping the phase changes with birefringence interrogation. A temperature sensor based on Sagnac loop interferometer has been used to verify the feasibility of the proposed method. Several tests with 40 °C temperature range have been accomplished with a great linearity of 0.9996 in full range. The proposed scheme is universal for all Sagnac loop interferometer based sensors and it has unlimited linear measurable range which overwhelming the conventional demodulation method with peak/dip tracing. Furthermore, the influence of the wavelength sampling interval and wavelength span on the demodulation error has been discussed in this work. The proposed interrogation method has a great significance for Sagnac loop interferometer sensor and it might greatly enhance the availability of this type of sensors in practical application.
NASA Astrophysics Data System (ADS)
Del Vescovo, D.; D'Ambrogio, W.
1995-01-01
A frequency domain method is presented to design a closed-loop control for vibration reduction flexible mechanisms. The procedure is developed on a single-link flexible arm, driven by one rotary degree of freedom servomotor, although the same technique may be applied to similar systems such as supports for aerospace antennae or solar panels. The method uses the structural frequency response functions (FRFs), thus avoiding system identification, that produces modeling uncertainties. Two closed-loops are implemented: the inner loop uses acceleration feedback with the aim of making the FRF similar to that of an equivalent rigid link; the outer loop feeds back displacements to achieve a fast positioning response and null steady state error. In both cases, the controller type is established a priori, while actual characteristics are defined by an optimisation procedure in which the relevant FRF is constrained into prescribed bounds and stability is taken into account.
Naito, Anna; Muchhala, Karan H.; Trang, Janice; Asatryan, Liana; Trudell, James R.; Homanics, Gregg E.; Alkana, Ronald L.; Davies, Daryl L.
2015-01-01
We recently developed Ultra-Sensitive Ethanol Receptors (USERs) as a novel tool for investigation of single receptor subunit populations sensitized to extremely low ethanol concentrations that do not affect other receptors in the nervous system. To this end, we found that mutations within the extracellular Loop 2 region of glycine receptors (GlyRs) and γ-aminobutyric acid type A receptors (GABAARs) can significantly increase receptor sensitivity to micro-molar concentrations of ethanol resulting in up to a 100-fold increase in ethanol sensitivity relative to wild type (WT) receptors. The current study investigated: 1) Whether structural manipulations of Loop 2 in α1 GlyRs could similarly increase receptor sensitivity to other anesthetics; and 2) If mutations exclusive to the C-terminal end of Loop 2 are sufficient to impart these changes. We expressed α1 GlyR USERs in Xenopus oocytes and tested the effects of three classes of anesthetics, isoflurane (volatile), propofol (intravenous), and lidocaine (local), known to enhance glycine-induced chloride currents using two-electrode voltage clamp electrophysiology. Loop 2 mutations produced a significant 10-fold increase in isoflurane and lidocaine sensitivity, but no increase in propofol sensitivity compared to WT α1 GlyRs. Interestingly, we also found that structural manipulations in the C-terminal end of Loop 2 were sufficient and selective for α1 GlyR modulation by ethanol, isoflurane, and lidocaine. These studies are the first to report the extracellular region of α1 GlyRs as a site of lidocaine action. Overall, the findings suggest that Loop 2 of α1 GlyRs is a key region that mediates isoflurane and lidocaine modulation. Moreover, the results identify important amino acids in Loop 2 that regulate isoflurane, lidocaine, and ethanol action. Collectively, these data indicate the commonality of the sites for isoflurane, lidocaine, and ethanol action, and the structural requirements for allosteric modulation on α1 GlyRs within the extracellular Loop 2 region. PMID:25827497
Feedback: A Systems Approach to Evaluation and Course Design. Working Papers No. 21.
ERIC Educational Resources Information Center
Holmes, John
Two types of feedback are examined, and their use in controlling the processes of instructional development and improvement are discussed. Closed-loop feedback, the most direct, uses immediate feedback about a process or product to make immediate adjustments in it. Open-loop feedback, in which input cannot be changed immediately, uses feedback to…
Novel Use of Glucagon in a Closed-Loop System for Prevention of Hypoglycemia in Type 1 Diabetes
Castle, Jessica R.; Engle, Julia M.; Youssef, Joseph El; Massoud, Ryan G.; Yuen, Kevin C.J.; Kagan, Ryland; Ward, W. Kenneth
2010-01-01
OBJECTIVE To minimize hypoglycemia in subjects with type 1 diabetes by automated glucagon delivery in a closed-loop insulin delivery system. RESEARCH DESIGN AND METHODS Adult subjects with type 1 diabetes underwent one closed-loop study with insulin plus placebo and one study with insulin plus glucagon, given at times of impending hypoglycemia. Seven subjects received glucagon using high-gain parameters, and six subjects received glucagon in a more prolonged manner using low-gain parameters. Blood glucose levels were measured every 10 min and insulin and glucagon infusions were adjusted every 5 min. All subjects received a portion of their usual premeal insulin after meal announcement. RESULTS Automated glucagon plus insulin delivery, compared with placebo plus insulin, significantly reduced time spent in the hypoglycemic range (15 ± 6 vs. 40 ± 10 min/day, P = 0.04). Compared with placebo, high-gain glucagon delivery reduced the frequency of hypoglycemic events (1.0 ± 0.6 vs. 2.1 ± 0.6 events/day, P = 0.01) and the need for carbohydrate treatment (1.4 ± 0.8 vs. 4.0 ± 1.4 treatments/day, P = 0.01). Glucagon given with low-gain parameters did not significantly reduce hypoglycemic event frequency (P = NS) but did reduce frequency of carbohydrate treatment (P = 0.05). CONCLUSIONS During closed-loop treatment in subjects with type 1 diabetes, high-gain pulses of glucagon decreased the frequency of hypoglycemia. Larger and longer-term studies will be required to assess the effect of ongoing glucagon treatment on overall glycemic control. PMID:20332355
Mobile satellite communications - Vehicle antenna technology update
NASA Technical Reports Server (NTRS)
Bell, D.; Naderi, F. M.
1986-01-01
This paper discusses options for vehicle antennas to be used in mobile satellite communications systems. Two types of antennas are identified. A non-steerable, azimuthally omnidirectional antenna with a modest gain of 3 to 5 dBi is suggested when a low cost is desired. Alternatively, mechanically or electronically steerable antennas with a higher gain of 10 to 12 dBi are suggested to alleviate power and spectrum scarcity associated with mobile satellite communications. For steerable antennas, both open-loop and closed-loop pointing schemes are discussed. Monopulse and sequential lobing are proposed for the mechanically steered and electronically steered antennas, respectively. This paper suggests a hybrid open-loop/closed-loop pointing technique as the best performer in the mobile satellite environment.
A Robust H ∞ Controller for an UAV Flight Control System.
López, J; Dormido, R; Dormido, S; Gómez, J P
2015-01-01
The objective of this paper is the implementation and validation of a robust H ∞ controller for an UAV to track all types of manoeuvres in the presence of noisy environment. A robust inner-outer loop strategy is implemented. To design the H ∞ robust controller in the inner loop, H ∞ control methodology is used. The two controllers that conform the outer loop are designed using the H ∞ Loop Shaping technique. The reference vector used in the control architecture formed by vertical velocity, true airspeed, and heading angle, suggests a nontraditional way to pilot the aircraft. The simulation results show that the proposed control scheme works well despite the presence of noise and uncertainties, so the control system satisfies the requirements.
Genome Organization Drives Chromosome Fragility.
Canela, Andres; Maman, Yaakov; Jung, Seolkyoung; Wong, Nancy; Callen, Elsa; Day, Amanda; Kieffer-Kwon, Kyong-Rim; Pekowska, Aleksandra; Zhang, Hongliang; Rao, Suhas S P; Huang, Su-Chen; Mckinnon, Peter J; Aplan, Peter D; Pommier, Yves; Aiden, Erez Lieberman; Casellas, Rafael; Nussenzweig, André
2017-07-27
In this study, we show that evolutionarily conserved chromosome loop anchors bound by CCCTC-binding factor (CTCF) and cohesin are vulnerable to DNA double strand breaks (DSBs) mediated by topoisomerase 2B (TOP2B). Polymorphisms in the genome that redistribute CTCF/cohesin occupancy rewire DNA cleavage sites to novel loop anchors. While transcription- and replication-coupled genomic rearrangements have been well documented, we demonstrate that DSBs formed at loop anchors are largely transcription-, replication-, and cell-type-independent. DSBs are continuously formed throughout interphase, are enriched on both sides of strong topological domain borders, and frequently occur at breakpoint clusters commonly translocated in cancer. Thus, loop anchors serve as fragile sites that generate DSBs and chromosomal rearrangements. VIDEO ABSTRACT. Published by Elsevier Inc.
F4 symmetric ϕ3 theory at four loops
NASA Astrophysics Data System (ADS)
Gracey, J. A.
2017-03-01
The renormalization group functions for six dimensional scalar ϕ3 theory with an F4 symmetry are provided at four loops in the modified minimal subtraction (MS ¯ ) scheme. Aside from the anomalous dimension of ϕ and the β -function this includes the mass operator and a ϕ2-type operator. The anomalous dimension of the latter is computed explicitly at four loops for the 26 and 324 representations of F4. The ɛ expansion of all the related critical exponents are determined to O (ɛ4). For instance the value for Δϕ agrees with recent conformal bootstrap estimates in 5 and 5.95 dimensions. The renormalization group functions are also provided at four loops for the group E6.
DOE Office of Scientific and Technical Information (OSTI.GOV)
Meshcheryakov, Vladimir A.; Kitao, Akio; Core Research for Evolutionary Science and Technology, Tokyo 113-0032
2013-05-01
Crystal structures of the cytoplasmic domain of FlhB from S. typhimurium and A. aeolicus were solved at 2.45 and 2.55 Å resolution, respectively. The deletion of a short loop in the cytoplasmic domain of Salmonella FlhB completely abolishes secretion by the type III secretion system. A molecular-dynamics simulation shows that the deletion of the loop affects the flexibility of a linker between the transmembrane and cytoplasmic domains of FlhB. The membrane protein FlhB is a highly conserved component of the flagellar secretion system. It is composed of an N-terminal transmembrane domain and a C-terminal cytoplasmic domain (FlhB{sub C}). Here, themore » crystal structures of FlhB{sub C} from Salmonella typhimurium and Aquifex aeolicus are described at 2.45 and 2.55 Å resolution, respectively. These flagellar FlhB{sub C} structures are similar to those of paralogues from the needle type III secretion system, with the major difference being in a linker that connects the transmembrane and cytoplasmic domains of FlhB. It was found that deletion of a short flexible loop in a globular part of Salmonella FlhB{sub C} leads to complete inhibition of secretion by the flagellar secretion system. Molecular-dynamics calculations demonstrate that the linker region is the most flexible part of FlhB{sub C} and that the deletion of the loop reduces this flexibility. These results are in good agreement with previous studies showing the importance of the linker in the function of FlhB and provide new insight into the relationship between the different parts of the FlhB{sub C} molecule.« less
How securely is the testicular artery occluded in the spermatic cord by using a ligature?
Rijkenhuizen, A B M; Sommerauer, S; Fasching, M; Velde, K; Peham, C
2013-09-01
There are no studies on the ideal ligature technique for the spermatic cord. To compare the maximal resistance pressure in the testicular artery and the maximal tensile forces to produce failure of 2 different ligature techniques used for ligation of the equine spermatic cord. The capabilities of 2 types of ligatures, single knot loop and double knot loop, were assessed using a pressure-resistance test in testicular arteries and with an in vitro mechanical evaluation of the tensile strength by single cycle-to-failure testing. In the pressure-resistance test, the mean ± s.d. peak force at failure of the single knot loop was 354.4 ± 91.7 mmHg and for the double knot loop 303.2 ± 62.0 mmHg. There was no significant difference between the maximal load to failure of the single knot loop and double knot loop technique. The pressure needed for rupture was significantly higher (P = 0.001) than for leakage. The maximal tensile force at failure of the single knot loop was significantly higher than the double knot loop (P = 0.028). There was no significant difference in load elongation properties to failure between the single knot loop and double knot loop. Although no significant differences were obtained in the pressure-resistance test, the single knot loop sustained significantly greater load to failure than the double knot loop in single cycle-to-failure testing. Based on these findings, it would appear that the performance of the single knot loop should be superior to the double knot loop. Both ligature techniques are able to withstand the normal physiological intravascular pressure. The single knot loop has the greater breaking strength of the 2 ligatures tested and is less time consuming to perform and may therefore have advantages during equine castration. © 2012 EVJ Ltd.
Gill, Pooria; Ranjbar, Bijan; Saber, Reza; Khajeh, Khosro; Mohammadian, Mehdi
2011-07-01
Cauliflower-like DNAs are stem-loop DNAs that are fabricated periodically in inverted repetitions from deoxyribonucleic acid phosphates (dNTPs) by loop-mediated isothermal amplification (LAMP). Cauliflower-like DNAs have ladder-shape behaviors on gel electrophoresis, and increasing the time of LAMP leads to multiplying the repetitions, stem-loops, and electrophoretic bands. Cauliflower-like DNAs were fabricated via LAMP using two loop primers, two bumper primers, dNTPs, a λ-phage DNA template, and a Bst DNA polymerase in 75- and 90-min periods. These times led to manufacturing two types of cauliflower-like DNAs with different contents of inverted repetitions and stem-loops, which were clearly indicated by two comparable electrophoresis patterns in agarose gel. LAMP-fabricated DNAs and natural dsB-DNA (salmon genomic DNA) were dialyzed in Gomori phosphate buffer (10 mM, pH 7.4) to be isolated from salts, nucleotides, and primers. Dialyzed DNAs were studied using UV spectroscopy, circular dichroism spectropolarimetry, and fluorescence spectrophotometry. Structural analyses indicated reduction of the molecular ellipticity and extinction coefficients in comparison with B-DNA. Also, cauliflower-like DNAs demonstrated less intrinsic and more extrinsic fluorescence in comparison with natural DNA. The overwinding and lengthening of the cauliflower-like configurations of LAMP DNAs led to changes in physical parameters of this type of DNA in comparison with natural DNA. The results obtained introduced new biomolecular characteristics of DNA macromolecules fabricated within a LAMP process and show the effects of more inverted repeats and stem-loops, which are manufactured by lengthening the process.
Jimenez-Sandoval, Pedro; Vique-Sanchez, Jose Luis; Hidalgo, Marisol López; Velazquez-Juarez, Gilberto; Diaz-Quezada, Corina; Arroyo-Navarro, Luis Fernando; Moran, Gabriela Montero; Fattori, Juliana; Jessica Diaz-Salazar, A; Rudiño-Pinera, Enrique; Sotelo-Mundo, Rogerio; Figueira, Ana Carolina Migliorini; Lara-Gonzalez, Samuel; Benítez-Cardoza, Claudia G; Brieba, Luis G
2017-11-01
The protozoan parasite Trichomonas vaginalis contains two nearly identical triosephosphate isomerases (TvTIMs) that dissociate into stable monomers and dimerize upon substrate binding. Herein, we compare the role of the "ball and socket" and loop 3 interactions in substrate assisted dimer assembly in both TvTIMs. We found that point mutants at the "ball" are only 39 and 29-fold less catalytically active than their corresponding wild-type counterparts, whereas Δloop 3 deletions are 1502 and 9400-fold less active. Point and deletion mutants dissociate into stable monomers. However, point mutants assemble as catalytic competent dimers upon binding of the transition state substrate analog PGH, whereas loop 3 deletions remain monomeric. A comparison between crystal structures of point and loop 3 deletion monomeric mutants illustrates that the catalytic residues in point mutants and wild-type TvTIMs are maintained in the same orientation, whereas the catalytic residues in deletion mutants show an increase in thermal mobility and present structural disorder that may hamper their catalytic role. The high enzymatic activity present in monomeric point mutants correlates with the formation of dimeric TvTIMs upon substrate binding. In contrast, the low activity and lack of dimer assembly in deletion mutants suggests a role of loop 3 in promoting the formation of the active site as well as dimer assembly. Our results suggest that in TvTIMs the active site is assembled during dimerization and that the integrity of loop 3 and ball and socket residues is crucial to stabilize the dimer. Copyright © 2017 Elsevier B.V. All rights reserved.
Modeling gene regulatory network motifs using statecharts
2012-01-01
Background Gene regulatory networks are widely used by biologists to describe the interactions among genes, proteins and other components at the intra-cellular level. Recently, a great effort has been devoted to give gene regulatory networks a formal semantics based on existing computational frameworks. For this purpose, we consider Statecharts, which are a modular, hierarchical and executable formal model widely used to represent software systems. We use Statecharts for modeling small and recurring patterns of interactions in gene regulatory networks, called motifs. Results We present an improved method for modeling gene regulatory network motifs using Statecharts and we describe the successful modeling of several motifs, including those which could not be modeled or whose models could not be distinguished using the method of a previous proposal. We model motifs in an easy and intuitive way by taking advantage of the visual features of Statecharts. Our modeling approach is able to simulate some interesting temporal properties of gene regulatory network motifs: the delay in the activation and the deactivation of the "output" gene in the coherent type-1 feedforward loop, the pulse in the incoherent type-1 feedforward loop, the bistability nature of double positive and double negative feedback loops, the oscillatory behavior of the negative feedback loop, and the "lock-in" effect of positive autoregulation. Conclusions We present a Statecharts-based approach for the modeling of gene regulatory network motifs in biological systems. The basic motifs used to build more complex networks (that is, simple regulation, reciprocal regulation, feedback loop, feedforward loop, and autoregulation) can be faithfully described and their temporal dynamics can be analyzed. PMID:22536967
DOE Office of Scientific and Technical Information (OSTI.GOV)
Yano, Michael; Kriek, Mariska; Wel, Arjen van der
We present the relation between galaxy structure and spectral type, using a K-selected galaxy sample at 0.5 < z < 2.0. Based on similarities between the UV-to-NIR spectral energy distributions (SEDs), we classify galaxies into 32 spectral types. The different types span a wide range in evolutionary phases, and thus—in combination with available CANDELS/F160W imaging—are ideal to study the structural evolution of galaxies. Effective radii (R{sub e}) and Sérsic parameters (n) have been measured for 572 individual galaxies, and for each type, we determine R{sub e} at fixed stellar mass by correcting for the mass-size relation. We use the rest-frame U − V versus V − J diagrammore » to investigate evolutionary trends. When moving into the direction perpendicular to the star-forming sequence, in which we see the Hα equivalent width and the specific star formation rate (sSFR) decrease, we find a decrease in R{sub e} and an increase in n. On the quiescent sequence we find an opposite trend, with older redder galaxies being larger. When splitting the sample into redshift bins, we find that young post-starburst galaxies are most prevalent at z > 1.5 and significantly smaller than all other galaxy types at the same redshift. This result suggests that the suppression of star formation may be associated with significant structural evolution at z > 1.5. At z < 1, galaxy types with intermediate sSFRs (10{sup −11.5}–10{sup −10.5} yr{sup −1}) do not have post-starburst SED shapes. These galaxies have similar sizes as older quiescent galaxies, implying that they can passively evolve onto the quiescent sequence, without increasing the average size of the quiescent galaxy population.« less
Kanematsu, Hideyuki; Kudara, Hikonaru; Kanesaki, Shun; Kogo, Takeshi; Ikegai, Hajime; Ogawa, Akiko; Hirai, Nobumitsu
2016-01-01
A laboratory biofilm reactor (LBR) was modified to a new loop-type closed system in order to evaluate novel stents and catheter materials using 3D optical microscopy and Raman spectroscopy. Two metallic specimens, pure nickel and cupronickel (80% Cu-20% Ni), along with two polymers, silicone and polyurethane, were chosen as examples to ratify the system. Each set of specimens was assigned to the LBR using either tap water or an NB (Nutrient broth based on peptone from animal foods and beef extract mainly)—cultured solution with E-coli formed over 48–72 h. The specimens were then analyzed using Raman Spectroscopy. 3D optical microscopy was employed to corroborate the Raman Spectroscopy results for only the metallic specimens since the inherent roughness of the polymer specimens made such measurements difficult. The findings suggest that the closed loop-type LBR together with Raman spectroscopy analysis is a useful method for evaluating biomaterials as a potential urinary system. PMID:28773945
Tensile strength of surgical knots in abdominal wound closure.
Fong, Eva D M; Bartlett, Adam S R; Malak, Sharif; Anderson, Iain A
2008-03-01
Abdominal wound dehiscence is a surgical catastrophe that can be attributed to patients or technical factors. The technical properties of the monofilament sutures and knots that are commonly used in abdominal closure are poorly understood. The aim of this study was to compare the tensile strength of monofilament sutures tied with conventional knots. To do this, the knot-holding capacity of four types of knots (square, surgeons', Aberdeen and loop) were tested using three types of gauge 1 monofilament suture, namely nylon, polyglyconate and polydioxanone, using a tensiometer. We found that the knot-holding capacity of the loop knot was between twofold and threefold greater than all the other knots examined. In comparing suture types, polyglyconate had the highest knot-holding capacity for all the knots that were examined and there was no difference in the tensile strength of nylon and polyglyconate tied in a square, surgeons' or Aberdeen knot (P < 0.05). In conclusion, our findings suggest that closure of an abdominal wound would be best commenced with a loop knot, using gauge 1 polyglyconate and finished with either an Aberdeen square or surgeons' knot would be appropriate.
Interaction of irradiation-induced prismatic dislocation loops with free surfaces in tungsten
NASA Astrophysics Data System (ADS)
Fikar, Jan; Gröger, Roman; Schäublin, Robin
2017-02-01
The prismatic dislocation loops appear in metals as a result of high-energy irradiation. Understanding their formation and interaction is important for quantification of irradiation-induced deterioration of mechanical properties. Characterization of dislocation loops in thin foils is commonly made using transmission electron microscopy (TEM), but the results are inevitably influenced by the proximity of free surfaces. The prismatic loops are attracted to free surfaces by image forces. Depending on the type, size and depth of the loop in the foil, they can escape to the free surface, thus invalidating TEM observations and conclusions. In this article small prismatic hexagonal and circular dislocation loops in tungsten with the Burgers vectors 1/2 〈 1 1 1 〉 and 〈 1 0 0 〉 are studied by molecular statics simulations using three embedded atom method (EAM) potentials. The calculated image forces are compared to known elastic solutions. A particular attention is paid to the critical stress to move edge dislocations. The escape of the loop to the free surface is quantified by a combination of atomistic simulations and elastic calculations. For example, for the 1/2 〈 1 1 1 〉 loop with diameter 7.4 nm in a 55 nm thick foil we calculated that about one half of the loops will escape to the free surface. This implies that TEM observations detect only approx. 50% of the loops that were originally present in the foil.
syk kinase activation by a src kinase-initiated activation loop phosphorylation chain reaction
El-Hillal, O.; Kurosaki, T.; Yamamura, H.; Kinet, J.-P.; Scharenberg, A. M.
1997-01-01
Activation of the syk tyrosine kinase occurs almost immediately following engagement of many types of antigen receptors, including Fc receptors, but the mechanism through which syk is activated is currently unclear. Here we demonstrate that Fc receptor-induced syk activation occurs as the result of phosphorylation of the syk activation loop by both src family kinases and other molecules of activated syk, suggesting that syk activation occurs as the result of a src kinase-initiated activation loop phosphorylation chain reaction. This type of activation mechanism predicts that syk activation would exhibit exponential kinetics, providing a potential explanation for its rapid and robust activation by even weak antigen receptor stimuli. We propose that a similar mechanism may be responsible for generating rapid activation of other cytoplasmic tyrosine kinases, such as those of the Bruton tyrosine kinase/tec family, as well. PMID:9050880
Highly sensitive self-complementary DNA nanoswitches triggered by polyelectrolytes.
Wu, Jincai; Yu, Feng; Zhang, Zheng; Chen, Yong; Du, Jie; Maruyama, Atsushi
2016-01-07
Dimerization of two homologous strands of genomic DNA/RNA is an essential feature of retroviral replication. Herein we show that a cationic comb-type copolymer (CCC), poly(L-lysine)-graft-dextran, accelerates the dimerization of self-complementary stem-loop DNA, frequently found in functional DNA/RNA molecules, such as aptamers. Furthermore, an anionic polymer poly(sodium vinylsulfonate) (PVS) dissociates CCC from the duplex shortly within a few seconds. Then single stem-loop DNA spontaneously transforms from its dimer. Thus we can easily control the dimer and stem-loop DNA by switching on/off CCC activity. Both polyelectrolytes and DNA concentrations are in the nanomole per liter range. The polyelectrolyte-assisted transconformation and sequences design strategy ensures the reversible state control with rapid response and effective switching under physiologically relevant conditions. A further application of this sensitive assembly is to construct an aptamer-type drug delivery system, bind or release functional molecules responding to its transconformation.
The free-energy cost of interaction between DNA loops.
Huang, Lifang; Liu, Peijiang; Yuan, Zhanjiang; Zhou, Tianshou; Yu, Jianshe
2017-10-03
From the viewpoint of thermodynamics, the formation of DNA loops and the interaction between them, which are all non-equilibrium processes, result in the change of free energy, affecting gene expression and further cell-to-cell variability as observed experimentally. However, how these processes dissipate free energy remains largely unclear. Here, by analyzing a mechanic model that maps three fundamental topologies of two interacting DNA loops into a 4-state model of gene transcription, we first show that a longer DNA loop needs more mean free energy consumption. Then, independent of the type of interacting two DNA loops (nested, side-by-side or alternating), the promotion between them always consumes less mean free energy whereas the suppression dissipates more mean free energy. More interestingly, we find that in contrast to the mechanism of direct looping between promoter and enhancer, the facilitated-tracking mechanism dissipates less mean free energy but enhances the mean mRNA expression, justifying the facilitated-tracking hypothesis, a long-standing debate in biology. Based on minimal energy principle, we thus speculate that organisms would utilize the mechanisms of loop-loop promotion and facilitated tracking to survive in complex environments. Our studies provide insights into the understanding of gene expression regulation mechanism from the view of energy consumption.
NASA Astrophysics Data System (ADS)
Chen, Jiao; Tong, Zhengrong; Zhang, Weihua; Xue, Lifang; Pan, Honggang
2018-05-01
Two types of tunable multiwavelength fiber lasers based on two-section polarization maintaining fibers (PMFs) cascaded/in parallel and nonlinear optical loop are proposed and experimentally demonstrated. Two-section cascaded PMFs and two polarization controllers (PCs) form the two-stage Lyot filter, which can generate comb spectrum to achieve multiwavelength output. When two sections of PMFs are in parallel, PCs in two paths are adjusted to change the beam’s polarization to suppress the light of one branch, and then the light of the other branch passes through the cavity. Additionally, a nonlinear optical loop acts as an intensity-dependent component, which can suppress the mode competition to maintain a stable output of multiwavelength lasing. The nonlinear optical loop is made by a 3 dB coupler, a PC3, and a 200 m high nonlinear fiber. Two types of tunable multiwavelength fiber lasers can achieve tuning of the channel space and the number of lasing wavelengths by adjusting PC1 and PC2. The channel space of the multiwavelengh laser can be tuned at nearly 0.4, 0.68, and 0.92 nm. Meanwhile, the spectral range of multiwavelength lasing can be controlled by PC3 in the nonlinear optical loop, and the tuning range of two multiwavelength lasers is about 2.28 and 1.45 nm, respectively.
NASA Astrophysics Data System (ADS)
Harrison, R. W.; Greaves, G.; Hinks, J. A.; Donnelly, S. E.
2017-11-01
Transmission electron microscopy (TEM) with in-situ He ion irradiation has been used to examine the damage microstructure of W when varying the helium concentration to displacement damage ratio, irradiation temperature and total dose. Irradiations employed 15, 60 or 85 keV He ions, at temperatures between 500 and 1000 °C up to doses of ∼3.0 DPA. Once nucleated and grown to an observable size in the TEM, bubble diameter as a function of irradiation dose did not measurably increase at irradiation temperatures of 500 °C between 1.0 and 3.0 DPA; this is attributed to the low mobility of vacancies and He/vacancy complexes at these temperatures. Bubble diameter increased slightly for irradiation temperatures of 750 °C and rapidly increased when irradiated at 1000 °C. Dislocation loops were observed at irradiation temperatures of 500 and 750 °C and no loops were observed at 1000 °C. Burgers vectors of the dislocations were determined to be b = ±½<111> type only and both vacancy and interstitial loops were observed. The proportion of interstitial loops increased with He-appm/DPA ratio and this is attributed to the concomitant increase in bubble areal density, which reduces the vacancy flux for both the growth of vacancy-type loops and the annihilation of interstitial clusters.
Study of mitochondria D-loop gene to detect the heterogeneity of gemak in Turnicidae family
NASA Astrophysics Data System (ADS)
Setiati, N.; Partaya
2018-03-01
As a part of life biodiversity, birds in Turnicidae family should be preserved from the extinction and its type heterogeneity decline. One effort for giving the strategic base of plasma nutfah conservation is through genetic heterogeneity study. The aim of the research is to analyze D-loop gen from DNA mitochondria of gemak bird in Turnicidae family molecularly. From the result of the analysis, it may be known the genetic heterogeneity of gemak bird based on the sequence of D-loop gen. The collection of both types of gemak of Turnicidae family is still easy since we can find them in ricefield area after harvest particularly for Gemakloreng (Turnix sylvatica), it means while gemak tegalan (Turnixsusciator) is getting difficult to find. Based on the above DNA quantification standard, the blood sample of Gemak in this research is mostly grouped into pure blood (ranges from 1,63 – 1,90), and it deserves to be used for PCR analysis. The sequencing analysis has not detected the sequence of nucleotide completely. However, it indicates sequence polymorphism of base as the arranger of D-loop gen. D-loop gen may identify genetic heterogeneity of gemak bird of Turnicidae family, but it is necessary to perform further sequencing analysis with PCR-RFLP technique. This complete nucleotide sequence is obtained and easy to detect after being cut restriction enzyme.
Genotype-phenotype aspects of type 2 long QT syndrome.
Shimizu, Wataru; Moss, Arthur J; Wilde, Arthur A M; Towbin, Jeffrey A; Ackerman, Michael J; January, Craig T; Tester, David J; Zareba, Wojciech; Robinson, Jennifer L; Qi, Ming; Vincent, G Michael; Kaufman, Elizabeth S; Hofman, Nynke; Noda, Takashi; Kamakura, Shiro; Miyamoto, Yoshihiro; Shah, Samit; Amin, Vinit; Goldenberg, Ilan; Andrews, Mark L; McNitt, Scott
2009-11-24
The purpose of this study was to investigate the effect of location, coding type, and topology of KCNH2(hERG) mutations on clinical phenotype in type 2 long QT syndrome (LQTS). Previous studies were limited by population size in their ability to examine phenotypic effect of location, type, and topology. Study subjects included 858 type 2 LQTS patients with 162 different KCNH2 mutations in 213 proband-identified families. The Cox proportional-hazards survivorship model was used to evaluate independent contributions of clinical and genetic factors to the first cardiac events. For patients with missense mutations, the transmembrane pore (S5-loop-S6) and N-terminus regions were a significantly greater risk than the C-terminus region (hazard ratio [HR]: 2.87 and 1.86, respectively), but the transmembrane nonpore (S1-S4) region was not (HR: 1.19). Additionally, the transmembrane pore region was significantly riskier than the N-terminus or transmembrane nonpore regions (HR: 1.54 and 2.42, respectively). However, for nonmissense mutations, these other regions were no longer riskier than the C-terminus (HR: 1.13, 0.77, and 0.46, respectively). Likewise, subjects with nonmissense mutations were at significantly higher risk than were subjects with missense mutations in the C-terminus region (HR: 2.00), but that was not the case in other regions. This mutation location-type interaction was significant (p = 0.008). A significantly higher risk was found in subjects with mutations located in alpha-helical domains than in subjects with mutations in beta-sheet domains or other locations (HR: 1.74 and 1.33, respectively). Time-dependent beta-blocker use was associated with a significant 63% reduction in the risk of first cardiac events (p < 0.001). The KCNH2 missense mutations located in the transmembrane S5-loop-S6 region are associated with the greatest risk.
The Quest for Dusty Primeval Galaxies
NASA Astrophysics Data System (ADS)
Mancuso, C.; Lapi, A.; Danese, L.
2016-06-01
We exploit the continuity equation approach and the 'main sequence' star-formation timescales to show that the observed high abundance of galaxies with stellar masses ? a few >10^10 M_⊙ at redshift z >? 4 implies the existence of a galaxy population featuring large star formation rates (SFRs) ψ >? 10^2 M_⊙ yr^-1 in heavily dust-obscured conditions. These galaxies constitute the high-redshift counterparts of the dusty star-forming population already surveyed for z<3 in the far-IR band by the Herschel space observatory. We work out specific predictions for the evolution of the corresponding stellar mass and SFR functions out to z ˜ 10, elucidating that the number density at z 8 for SFRs ψ ? >30 M_⊙ yr^-1 cannot be estimated relying on the UV luminosity function alone, even when standard corrections for dust extinction based on the UV slope are applied. We compute the number counts and redshift distributions (including galaxy-scale gravitational lensing) of this galaxy population, and show that current data from AzTEC-LABOCA, SCUBA-2 and ALMA-SPT surveys are already digging into it. We substantiate how an observational strategy based on a color preselection in the far-IR or (sub-)mm band with Herschel and SCUBA-2, supplemented by photometric data via on-source observations with ALMA, can allow to reconstruct the bright end of the SFR functions out to z ? 8. In parallel, such a challenging task can be managed by exploiting current UV surveys in combination with (sub-)mm observations by ALMA and NIKA2 and/or radio observations by SKA and its precursors.
DOE Office of Scientific and Technical Information (OSTI.GOV)
Lange, Johannes U.; Van Dokkum, Pieter G.; Momcheva, Ivelina G.
2016-03-01
We explore the presence of non-stellar rest-frame near-IR (2–5 μm) emission in galaxies at z ∼ 1. Previous studies identified this excess in relatively small samples and suggested that such non-stellar emission, which could be linked to the 3.3 μm polycyclic aromatic hydrocarbons feature or hot dust emission, is associated with an increased star formation rate (SFR). In this Letter, we confirm and quantify the presence of an IR excess in a significant fraction of galaxies in the 3D-HST GOODS catalogs. By constructing a matched sample of galaxies with and without strong non-stellar near-IR emission, we find that galaxies with such emissionmore » are predominantly star-forming galaxies. Moreover, star-forming galaxies with an excess show increased mid- and far-IR and Hα emission compared to other star-forming galaxies without. While galaxies with a near-IR excess show a larger fraction of individually detected X-ray active galactic nuclei (AGNs), an X-ray stacking analysis, together with the IR-colors and Hα profiles, shows that AGNs are unlikely to be the dominant source of excess in the majority of galaxies. Our results suggest that non-stellar near-IR emission is linked to increased SFRs and is ubiquitous among star-forming galaxies. As such, the near-IR emission might be a powerful tool to measure SFRs in the era of the James Webb Space Telescope.« less
DOE Office of Scientific and Technical Information (OSTI.GOV)
Ogle, Patrick M.; Lanz, Lauranne; Nader, Cyril
We report the discovery of spiral galaxies that are as optically luminous as elliptical brightest cluster galaxies, with r-band monochromatic luminosity L{sub r} = 8–14L* (4.3–7.5 × 10{sup 44} erg s{sup −1}). These super spiral galaxies are also giant and massive, with diameter D = 57–134 kpc and stellar mass M{sub stars} = 0.3–3.4 × 10{sup 11}M{sub ⊙}. We find 53 super spirals out of a complete sample of 1616 SDSS galaxies with redshift z < 0.3 and L{sub r} > 8L*. The closest example is found at z = 0.089. We use existing photometry to estimate their stellar masses and star formation rates (SFRs). The SDSS and Wide-field Infrared Survey Explorer colors aremore » consistent with normal star-forming spirals on the blue sequence. However, the extreme masses and rapid SFRs of 5–65 M{sub ⊙} yr{sup −1} place super spirals in a sparsely populated region of parameter space, above the star-forming main sequence of disk galaxies. Super spirals occupy a diverse range of environments, from isolation to cluster centers. We find four super spiral galaxy systems that are late-stage major mergers—a possible clue to their formation. We suggest that super spirals are a remnant population of unquenched, massive disk galaxies. They may eventually become massive lenticular galaxies after they are cut off from their gas supply and their disks fade.« less
The Influence of Neonatal Nursery Design on Mothers' Interactions in the Nursery.
Jones, Liz; Peters, Kathryn; Rowe, Jennifer; Sheeran, Nicola
2016-01-01
This study examined the influence of neonatal nursery design on interactions between nurses and mothers of infants in the nursery. We used a natural quasi-experimental design, using semi-structured interviews and a structured measure of mothers' and nurses' perceptions of nursing care, to compare mothers (n=26 and n=40) and nurses (n=22 and n=29) in an open-bay (OB) nursery and a single family room (SFR) nursery. Thematic analysis was used to generate key themes from the interviews. Mothers and nurses in both nursery designs talked about Valuing interactions; the importance of interactions between mothers and nurses. Mothers and nurses described SFRs as providing a space, My/their room, which enhanced mothers' sense of control and connection with the infant. SFRs were also associated with Changing the norms of interactions with nurses and other mothers, which created challenges in the desired quantity and quality of interactions for mothers and nurses. Nurses in the SFR nursery also reported Enhanced interactions, including improved confidentiality and personalized communication. Mothers in the OB nursery reported more supportive mothering actions from nurses than mothers in the SFR nursery. Both mothers and nurses in the OB nursery also talked about Our nursery community, which captured the value of having other nurses and mothers in the rooms. Mothers and nurses perceived that the SFR nursery enhanced privacy and maternal closeness for mothers compared to the OB nursery. However, the SFR nursery design presented challenges to some interactions of value to nurses and mothers. Copyright © 2016 Elsevier Inc. All rights reserved.
Estimating the Star Formation Rate at 1 kpc Scales in nearby Galaxies
NASA Astrophysics Data System (ADS)
Leroy, Adam K.; Bigiel, Frank; de Blok, W. J. G.; Boissier, Samuel; Bolatto, Alberto; Brinks, Elias; Madore, Barry; Munoz-Mateos, Juan-Carlos; Murphy, Eric; Sandstrom, Karin; Schruba, Andreas; Walter, Fabian
2012-07-01
Using combinations of Hα, ultraviolet (UV), and infrared (IR) emission, we estimate the star formation rate (SFR) surface density, ΣSFR, at 1 kpc resolution for 30 disk galaxies that are targets of the IRAM HERACLES CO survey. We present a new physically motivated IR spectral-energy-distribution-based approach to account for possible contributions to 24 μm emission not associated with recent star formation. Considering a variety of "reference" SFRs from the literature, we revisit the calibration of the 24 μm term in hybrid (UV+IR or Hα+IR) tracers. We show that the overall calibration of this term remains uncertain at the factor of two level because of the lack of wide-field, robust reference SFR estimates. Within this uncertainty, published calibrations represent a reasonable starting point for 1 kpc-wide areas of star-forming disk galaxies, but we re-derive and refine the calibration of the IR term in these tracers to match our resolution and approach to 24 μm emission. We compare a large suite of ΣSFR estimates and find that above ΣSFR ~ 10-3 M ⊙ yr-1 kpc-2 the systematic differences among tracers are less than a factor of two across two orders of magnitude dynamic range. We caution that methodology and data both become serious issues below this level. We note from simple model considerations that when focusing on a part of a galaxy dominated by a single stellar population, the intrinsic uncertainty in Hα- and FUV-based SFRs is ~0.3 and ~0.5 dex.
STAR FORMATION ACTIVITY IN A YOUNG GALAXY CLUSTER AT Z = 0.866
DOE Office of Scientific and Technical Information (OSTI.GOV)
Laganá, T. F.; Martins, L. P.; Ulmer, M. P.
2016-07-10
The galaxy cluster RX J1257+4738 at z = 0.866 is one of the highest redshift clusters with a richness of multi-wavelength data, and is thus a good target to study the star formation–density relation at early epochs. Using a sample of spectroscopically confirmed cluster members, we derive the star-formation rates (SFRs) of our galaxies using two methods: (1) the relation between SFR and total infrared luminosity extrapolated from the observed Spitzer Multiband Imaging Photometer for Spitzer 24 μ m imaging data; and (2) spectral energy distribution fitting using the MAGPHYS code, including eight different bands. We show that, for thismore » cluster, the SFR–density relation is very weak and seems to be dominated by the two central galaxies and the SFR presents a mild dependence on stellar mass, with more massive galaxies having higher SFR. However, the specific SFR (SSFR) decreases with stellar mass, meaning that more massive galaxies are forming fewer stars per unit of mass, and thus suggesting that the increase in star-forming members is driven by cluster assembly and infall. If the environment is somehow driving the star formation, one would expect a relation between the SSFR and the cluster centric distance, but that is not the case. A possible scenario to explain this lack of correlation is the contamination by infalling galaxies in the inner part of the cluster, which may be on their initial pass through the cluster center. As these galaxies have higher SFRs for their stellar mass, they enhance the mean SSFR in the center of the cluster.« less
Demographics of Star-forming Galaxies since z ∼ 2.5. I. The UVJ Diagram in CANDELS
NASA Astrophysics Data System (ADS)
Fang, Jerome J.; Faber, S. M.; Koo, David C.; Rodríguez-Puebla, Aldo; Guo, Yicheng; Barro, Guillermo; Behroozi, Peter; Brammer, Gabriel; Chen, Zhu; Dekel, Avishai; Ferguson, Henry C.; Gawiser, Eric; Giavalisco, Mauro; Kartaltepe, Jeyhan; Kocevski, Dale D.; Koekemoer, Anton M.; McGrath, Elizabeth J.; McIntosh, Daniel; Newman, Jeffrey A.; Pacifici, Camilla; Pandya, Viraj; Pérez-González, Pablo G.; Primack, Joel R.; Salmon, Brett; Trump, Jonathan R.; Weiner, Benjamin; Willner, S. P.; Acquaviva, Viviana; Dahlen, Tomas; Finkelstein, Steven L.; Finlator, Kristian; Fontana, Adriano; Galametz, Audrey; Grogin, Norman A.; Gruetzbauch, Ruth; Johnson, Seth; Mobasher, Bahram; Papovich, Casey J.; Pforr, Janine; Salvato, Mara; Santini, P.; van der Wel, Arjen; Wiklind, Tommy; Wuyts, Stijn
2018-05-01
This is the first in a series of papers examining the demographics of star-forming (SF) galaxies at 0.2 < z < 2.5 in CANDELS. We study 9100 galaxies from GOODS-S and UDS, having published values of redshifts, masses, star formation rates (SFRs), and dust attenuation (A V ) derived from UV–optical spectral energy distribution fitting. In agreement with previous works, we find that the UVJ colors of a galaxy are closely correlated with its specific star formation rate (SSFR) and A V . We define rotated UVJ coordinate axes, termed S SED and C SED, that are parallel and perpendicular to the SF sequence and derive a quantitative calibration that predicts SSFR from C SED with an accuracy of ∼0.2 dex. SFRs from UV–optical fitting and from UV+IR values based on Spitzer/MIPS 24 μm agree well overall, but systematic differences of order 0.2 dex exist at high and low redshifts. A novel plotting scheme conveys the evolution of multiple galaxy properties simultaneously, and dust growth, as well as star formation decline and quenching, exhibit “mass-accelerated evolution” (“downsizing”). A population of transition galaxies below the SF main sequence is identified. These objects are located between SF and quiescent galaxies in UVJ space, and have lower A V and smaller radii than galaxies on the main sequence. Their properties are consistent with their being in transit between the two regions. The relative numbers of quenched, transition, and SF galaxies are given as a function of mass and redshift.
Calibrating Star Formation in WISE Using Total Infrared Luminosity
NASA Astrophysics Data System (ADS)
Cluver, M. E.; Jarrett, T. H.; Dale, D. A.; Smith, J.-D. T.; August, Tamlyn; Brown, M. J. I.
2017-11-01
We present accurate resolved WISE photometry of galaxies in the combined SINGS and KINGFISH sample. The luminosities in the W3 12 μm and W4 23 μm bands are calibrated to star formation rates (SFRs) derived using the total infrared luminosity, avoiding UV/optical uncertainties due to dust extinction corrections. The W3 relation has a 1σ scatter of 0.15 dex that is over nearly 5 orders of magnitude in SFR and 12 μm luminosity, and a range in host stellar mass from dwarfs (107 {M}⊙ ) to ˜ 3× {M}{\\star } (1011.5 {M}⊙ ) galaxies. In the absence of deep silicate absorption features and powerful active galactic nuclei, we expect this to be a reliable SFR indicator chiefly due to the broad nature of the W3 band. By contrast, the W4 SFR relation shows more scatter (1σ =0.18 dex). Both relations show reasonable agreement with radio-continuum-derived SFRs and excellent accordance with so-called “hybrid” Hα + 24 μm and FUV+24 μm indicators. Moreover, the WISE SFR relations appear to be insensitive to the metallicity range in the sample. We also compare our results with IRAS-selected luminous infrared galaxies, showing that the WISE relations maintain concordance, but systematically deviate for the most extreme galaxies. Given the all-sky coverage of WISE and the performance of the W3 band as an SFR indicator, the {L}12μ {{m}} SFR relation could be of great use to studies of nearby galaxies and forthcoming large-area surveys at optical and radio wavelengths.
Exploring Damped Ly Alpha System Host Galaxies Using Gamma-Ray Bursts
NASA Technical Reports Server (NTRS)
Toy, Vicki L.; Cucchiara, Antonino; Veilleux, Sylvain; Fumagalli, Michele; Rafelski, Marc; Rahmati, Alireza; Cenko, S. Bradley; Capone, John I.; Pasham, Dheeraj R.
2016-01-01
We present a sample of 45 Damped Ly-Alpha system [DLA; H I-N is greater than or equal to 2 x 10(exp. 20) cm(exp. -2)] counterparts (33 detections, 12 upper limits) which host gamma-ray bursts (GRB-DLAs) in order to investigate star formation and metallicity within galaxies hosting DLAs. Our sample spans z is approx. 2 - 6 and is nearly three times larger than any previously detected DLA counterparts survey based on quasar line-of-sight searches (QSO-DLAs). We report star formation rates (SFRs) from rest-frame UV photometry and spectral energy distribution modeling. We find that DLA counterpart SFRs are not correlated with either redshift or H I column density. Thanks to the combination of Hubble Space Telescope and ground-based observations, we also investigate DLA host star formation efficiency. Our GRB-DLA counterpart sample spans both higher efficiency and low efficiency star formation regions compared to the local Kennicutt-Schmidt relation, local star formation laws, and z is approximately 3 cosmological simulations. We also compare the depletion times of our DLA hosts sample to other objects in the local universe; our sample appears to deviate from the star formation efficiencies measured in local spiral and dwarf galaxies. Furthermore, we find similar efficiencies as local inner disks, SMC, and Lyman-break galaxy outskirts. Finally, our enrichment time measurements show a spread of systems with under- and over-abundance of metals, which may suggest that these systems had episodic star formation and a metal enrichment/depletion as a result of strong stellar feedback and/or metal inflow/outflow.
NASA Astrophysics Data System (ADS)
Matsuura, H.; Nagasaka, Y.
2018-02-01
We describe an instrument for the measurement of the Soret and thermodiffusion coefficients in ternary systems based on the transient holographic grating technique, which is called Soret forced Rayleigh scattering (SFRS) or thermal diffusion forced Rayleigh scattering (TDFRS). We integrated the SFRS technique and the two-wavelength detection technique, which enabled us to obtain two different signals to determine the two independent Soret coefficients and thermodiffusion coefficients in ternary systems. The instrument has been designed to read the mass transport simultaneously by two-wavelength lasers with wavelengths of λ = 403 nm and λ = 639 nm. The irradiation time of the probing lasers is controlled to reduce the effect of laser absorption to the sample with dye (quinizarin), which is added to convert the interference pattern of the heating laser of λ = 532 nm to the temperature grating. The result of the measurement of binary benchmark mixtures composed of 1,2,3,4-tetrahydronaphthalene (THN), isobutylbenzene (IBB), and n-dodecane (nC12) shows that the simultaneous two-wavelength observation of the Soret effect and the mass diffusion are adequately performed. To evaluate performance in the measurement of ternary systems, we carried out experiments on the ternary benchmark mixtures of THN/IBB/nC12 with the mass fractions of 0.800/0.100/0.100 at a temperature of 298.2 K. The Soret coefficient and thermodiffusion coefficient agreed with the ternary benchmark values within the range of the standard uncertainties (23% for the Soret coefficient of THN and 30% for the thermodiffusion coefficient of THN).
Pan, Qunxing; He, Kongwang; Wang, Yongshan; Wang, Xiaoli; Ouyang, Wei
2013-06-01
An antigen-delivery system based on hybrid virus-like particles (VLPs) formed by the self-assembly of the capsid VP2 protein of porcine parvovirus (PPV) and expressing foreign peptides offers an alternative method for vaccination. In this study, the three-dimensional structure of the PPV capsid protein and surface loops deletion mutants were analyzed to define essential domains in PPV VP2 for the assembly of VLPs. Electron microscopic analysis and SDS-PAGE analysis confirmed the presence of abundant VLPs in a loop2 deletion mutant of expected size and appropriate morphology. Loop4 and loop2-loop4 deletion mutants, however, resulted in a lower number of particles and the morphology of the particles was not well preserved. Furthermore, the green fluorescent protein (gfp) gene was used as a model. GFP was observed at the same level in displacements mutants. However, GFP displacement mutants in loop2 construct allowed better adaptation for the fusion GFP to be further displayed on the surface of the capsid-like structure. Immunogenicity study showed that there is no obvious difference in mice inoculated with rAd-VP2(Δloop2), rAd-VP2(Δloop4), rAd-VP2(Δloop2-Δloop4), and PPV inactivated vaccine. The results suggested the possibility of inserting simultaneously B and T cell epitopes in the surface loop2 and the N-terminus. The combination of different types of epitopes (B, CD4+, and CD8+) in different positions of the PPV particles opens the way to the development of highly efficient vaccines, able to stimulate at the same time the different branches of the immune system.
Swigon, David; Coleman, Bernard D.; Olson, Wilma K.
2006-01-01
Repression of transcription of the Escherichia coli Lac operon by the Lac repressor (LacR) is accompanied by the simultaneous binding of LacR to two operators and the formation of a DNA loop. A recently developed theory of sequence-dependent DNA elasticity enables one to relate the fine structure of the LacR–DNA complex to a wide range of heretofore-unconnected experimental observations. Here, that theory is used to calculate the configuration and free energy of the DNA loop as a function of its length and base-pair sequence, its linking number, and the end conditions imposed by the LacR tetramer. The tetramer can assume two types of conformations. Whereas a rigid V-shaped structure is observed in the crystal, EM images show extended forms in which two dimer subunits are flexibly joined. Upon comparing our computed loop configurations with published experimental observations of permanganate sensitivities, DNase I cutting patterns, and loop stabilities, we conclude that linear DNA segments of short-to-medium chain length (50–180 bp) give rise to loops with the extended form of LacR and that loops formed within negatively supercoiled plasmids induce the V-shaped structure. PMID:16785444
Optical Methods in Fingerprint Imaging for Medical and Personality Applications
Wang, Jing-Wein; Lin, Ming-Hsun; Chang, Yao-Lang; Kuo, Chia-Ming
2017-01-01
Over the years, analysis and induction of personality traits has been a topic for individual subjective conjecture or speculation, rather than a focus of inductive scientific analysis. This study proposes a novel framework for analysis and induction of personality traits. First, 14 personality constructs based on the “Big Five” personality factors were developed. Next, a new fingerprint image algorithm was used for classification, and the fingerprints were classified into eight types. The relationship between personality traits and fingerprint type was derived from the results of the questionnaire survey. After comparison of pre-test and post-test results, this study determined the induction ability of personality traits from fingerprint type. Experimental results showed that the left/right thumbprint type of a majority of subjects was left loop/right loop and that the personalities of individuals with this fingerprint type were moderate with no significant differences in the 14 personality constructs. PMID:29065556
Optical Methods in Fingerprint Imaging for Medical and Personality Applications.
Wang, Chia-Nan; Wang, Jing-Wein; Lin, Ming-Hsun; Chang, Yao-Lang; Kuo, Chia-Ming
2017-10-23
Over the years, analysis and induction of personality traits has been a topic for individual subjective conjecture or speculation, rather than a focus of inductive scientific analysis. This study proposes a novel framework for analysis and induction of personality traits. First, 14 personality constructs based on the "Big Five" personality factors were developed. Next, a new fingerprint image algorithm was used for classification, and the fingerprints were classified into eight types. The relationship between personality traits and fingerprint type was derived from the results of the questionnaire survey. After comparison of pre-test and post-test results, this study determined the induction ability of personality traits from fingerprint type. Experimental results showed that the left/right thumbprint type of a majority of subjects was left loop/right loop and that the personalities of individuals with this fingerprint type were moderate with no significant differences in the 14 personality constructs.
NASA Technical Reports Server (NTRS)
Blalock, T. V.; Kennedy, E. J.
1972-01-01
Two basic types of strapdown gyroscope rebalance-electronics were analyzed and compared. These two types were a discrete-pulse ternary system and a width-modulated binary system. In the analyses, major emphasis was placed on the logic sections, the H-switches, the precision voltage reference loops, the noise performance, common-mode rejection, and loop compensation. Results of the analyses were used in identifying specific advantages and disadvantages of system details and in making accuracy and resolution comparisons. Sound engineering principles were applied in the development of both systems; however, it was concluded that each system has some disadvantages that are amenable to improvement.
Structure of adenovirus bound to cellular receptor car
Freimuth, Paul I.
2007-01-02
Disclosed is a mutant CAR-DI-binding adenovirus which has a genome comprising one or more mutations in sequences which encode the fiber protein knob domain wherein the mutation causes the encoded viral particle to have a significantly weakened binding affinity for CAR-DI relative to wild-type adenovirus. Such mutations may be in sequences which encode either the AB loop, or the HI loop of the fiber protein knob domain. Specific residues and mutations are described. Also disclosed is a method for generating a mutant adenovirus which is characterized by a receptor binding affinity or specificity which differs substantially from wild type.
Dynamic formation and magnetic support of loop or arcade prominences
NASA Technical Reports Server (NTRS)
Vanhoven, Gerard; Mok, Y.; Drake, J. F.
1992-01-01
The results of model dynamic simulations of the formation and support of a narrow prominence at the apex of a coronal magnetic loop or arcade are described. The condensation process proceeds via an initial radiative cooling and pressure drop, and a secondary siphon flow from the dense chromospheric ends. The antibuoyancy effect as the prominence forms causes a bending of a confining magnetic field, which propagates toward the semirigid ends of the magnetic loop. Thus, a wide magnetic 'hammock' or well (of a normal polarity Kippenhahn-Schlueter type) is formed, which supports the prominence at or near the field apex.
Nonequilibrium phase transitions in isotropic Ashkin-Teller model
NASA Astrophysics Data System (ADS)
Akıncı, Ümit
2017-03-01
Dynamic behavior of an isotropic Ashkin-Teller model in the presence of a periodically oscillating magnetic field has been analyzed by means of the mean field approximation. The dynamic equation of motion has been constructed with the help of a Glauber type stochastic process and solved for a square lattice. After defining the possible dynamical phases of the system, phase diagrams have been given and the behavior of the hysteresis loops has been investigated in detail. The hysteresis loop for specific order parameter of isotropic Ashkin-Teller model has been defined and characteristics of this loop in different dynamical phases have been given.
Sun, Yuanyuan; Tian, Hui; Liu, Chenghui; Sun, Yueying; Li, Zhengping
2017-10-05
A novel one-step microRNA assay is developed based on a target-triggered loop-mediated isothermal amplification (TT-LAMP) mechanism, which enables the accurate detection of as low as 100 aM (1 zmol) microRNA with simple one-step operation by using only one-type of DNA polymerase.
Artificial Pancreas Device Systems for the Closed-Loop Control of Type 1 Diabetes
Trevitt, Sara; Simpson, Sue; Wood, Annette
2015-01-01
Background: Closed-loop artificial pancreas device (APD) systems are externally worn medical devices that are being developed to enable people with type 1 diabetes to regulate their blood glucose levels in a more automated way. The innovative concept of this emerging technology is that hands-free, continuous, glycemic control can be achieved by using digital communication technology and advanced computer algorithms. Methods: A horizon scanning review of this field was conducted using online sources of intelligence to identify systems in development. The systems were classified into subtypes according to their level of automation, the hormonal and glycemic control approaches used, and their research setting. Results: Eighteen closed-loop APD systems were identified. All were being tested in clinical trials prior to potential commercialization. Six were being studied in the home setting, 5 in outpatient settings, and 7 in inpatient settings. It is estimated that 2 systems may become commercially available in the EU by the end of 2016, 1 during 2017, and 2 more in 2018. Conclusions: There are around 18 closed-loop APD systems progressing through early stages of clinical development. Only a few of these are currently in phase 3 trials and in settings that replicate real life. PMID:26589628
CD-loop Extension in Zika Virus Envelope Protein Key for Stability and Pathogenesis.
Gallichotte, Emily N; Dinnon, Kenneth H; Lim, Xin-Ni; Ng, Thiam-Seng; Lim, Elisa X Y; Menachery, Vineet D; Lok, Shee-Mei; Baric, Ralph S
2017-12-05
With severe disease manifestations including microcephaly, congenital malformation, and Guillain-Barré syndrome, Zika virus (ZIKV) remains a persistent global public health threat. Despite antigenic similarities with dengue viruses, structural studies have suggested the extended CD-loop and hydrogen-bonding interaction network within the ZIKV envelope protein contribute to stability differences between the viral families. This enhanced stability may lead to the augmented infection, disease manifestation, and persistence in body fluids seen following ZIKV infection. To examine the role of these motifs in infection, we generated a series of ZIKV recombinant viruses that disrupted the hydrogen-bonding network (350A, 351A, and 350A/351A) or the CD-loop extension (Δ346). Our results demonstrate a key role for the ZIKV extended CD-loop in cell-type-dependent replication, virion stability, and in vivo pathogenesis. Importantly, the Δ346 mutant maintains similar antigenicity to wild-type virus, opening the possibility for its use as a live-attenuated vaccine platform for ZIKV and other clinically relevant flaviviruses. © The Author(s) 2017. Published by Oxford University Press for the Infectious Diseases Society of America. All rights reserved. For permissions, e-mail: journals.permissions@oup.com.
Tang, Rixin; Whitwell, Robert L; Goodale, Melvyn A
2015-05-01
Goal-directed movements, such as reaching out to grasp an object, are necessarily constrained by the spatial properties of the target such as its size, shape, and position. For example, during a reach-to-grasp movement, the peak width of the aperture formed by the thumb and fingers in flight (peak grip aperture, PGA) is linearly related to the target's size. Suppressing vision throughout the movement (visual open loop) has a small though significant effect on this relationship. Visual open loop conditions also produce a large increase in the PGA compared to when vision is available throughout the movement (visual closed loop). Curiously, this differential effect of the availability of visual feedback is influenced by the presentation order: the difference in PGA between closed- and open-loop trials is smaller when these trials are intermixed (an effect we have called 'homogenization'). Thus, grasping movements are affected not only by the availability of visual feedback (closed loop or open loop) but also by what happened on the previous trial. It is not clear, however, whether this carry-over effect is mediated through motor (or sensorimotor) memory or through the interference of different task sets for closed-loop and open-loop feedback that determine when the movements are fully specified. We reasoned that sensorimotor memory, but not a task set for closed and open loop feedback, would be specific to the type of response. We tested this prediction in a condition in which pointing to targets was alternated with grasping those same targets. Critically, in this condition, when pointing was performed in open loop, grasping was always performed in closed loop (and vice versa). Despite the fact that closed- and open-loop trials were alternating in this condition, we found no evidence for homogenization of the PGA. Homogenization did occur, however, in a follow-up experiment in which grasping movements and visual feedback were alternated between the left and the right hand, indicating that sensorimotor (or motor) memory can operate both within and between hands when the response type is kept the same. In a final experiment, we ruled out the possibility that simply alternating the hand used to perform the grasp interferes with motor or sensorimotor memory. We did this by showing that when the hand was alternated within a block of exclusively closed- or open-loop trials, homogenization of the PGA did not occur. Taken together, the results suggest that (1) interference from simply switching between task sets for closed or open-loop feedback or from switching between the hands cannot account homogenization in the PGA and that (2) the programming and execution of grasps can borrow not only from grasping movements executed in the past by the same hand, but also from grasping movements executed with the other hand. Copyright © 2015 Elsevier B.V. All rights reserved.
Bally, Lia; Thabit, Hood; Kojzar, Harald; Mader, Julia K; Qerimi-Hyseni, Jehona; Hartnell, Sara; Tauschmann, Martin; Allen, Janet M; Wilinska, Malgorzata E; Pieber, Thomas R; Evans, Mark L; Hovorka, Roman
2017-04-01
Tight control of blood glucose concentration in people with type 1 diabetes predisposes to hypoglycaemia. We aimed to investigate whether day-and-night hybrid closed-loop insulin delivery can improve glucose control while alleviating the risk of hypoglycaemia in adults with HbA 1c below 7·5% (58 mmol/mol). In this open-label, randomised, crossover study, we recruited adults (aged ≥18 years) with type 1 diabetes and HbA 1c below 7·5% from Addenbrooke's Hospital (Cambridge, UK) and Medical University of Graz (Graz, Austria). After a 2-4 week run-in period, participants were randomly assigned (1:1), using web-based randomly permuted blocks of four, to receive insulin via the day-and-night hybrid closed-loop system or usual pump therapy for 4 weeks, followed by a 2-4 week washout period and then the other intervention for 4 weeks. Treatment interventions were unsupervised and done under free-living conditions. During the closed-loop period, a model-predictive control algorithm directed insulin delivery, and prandial insulin delivery was calculated with a standard bolus wizard. The primary outcome was the proportion of time when sensor glucose concentration was in target range (3·9-10·0 mmol/L) over the 4 week study period. Analyses were by intention to treat. This study is registered with ClinicalTrials.gov, number NCT02727231, and is completed. Between March 21 and June 24, 2016, we recruited 31 participants, of whom 29 were randomised. One participant withdrew during the first closed-loop period because of dissatisfaction with study devices and glucose control. The proportion of time when sensor glucose concentration was in target range was 10·5 percentage points higher (95% CI 7·6-13·4; p<0·0001) during closed-loop delivery compared with usual pump therapy (65·6% [SD 8·1] when participants used usual pump therapy vs 76·2% [6·4] when they used closed-loop). Compared with usual pump therapy, closed-loop delivery also reduced the proportion of time spent in hypoglycaemia: the proportion of time with glucose concentration below 3·5 mmol/L was reduced by 65% (53-74, p<0·0001) and below 2·8 mmol/L by 76% (59-86, p<0·0001). No episodes of serious hypoglycaemia or other serious adverse events occurred. Use of day-and-night hybrid closed-loop insulin delivery under unsupervised, free-living conditions for 4 weeks in adults with type 1 diabetes and HbA 1c below 7·5% is safe and well tolerated, improves glucose control, and reduces hypoglycaemia burden. Larger and longer studies are warranted. Swiss National Science Foundation (P1BEP3_165297), JDRF, UK National Institute for Health Research Cambridge Biomedical Research Centre, and Wellcome Strategic Award (100574/Z/12/Z). Copyright © 2017 The Author(s). Published by Elsevier Ltd. This is an Open Access article under the CC BY license. Published by Elsevier Ltd.. All rights reserved.
Grip Preference, Dermatoglyphics, and Hand Use in Captive Chimpanzees (Pan troglodytes)
Hopkins, William D.; Russell, Jamie L.; Hostetter, Autumn; Pilcher, Dawn; Dahl, Jeremy F.
2007-01-01
This paper examined the association between grip type, hand use, and fingerprint patterns in a sample of captive chimpanzees. Grip type for simple reaching was assessed for the left and right hand and classified as thumb-index, middle-index, or single-digit responses. Fingerprint patterns were characterized as whorls, loops, or arches on each finger. The results indicated that chimpanzees exhibit significantly more thumb-index responses for the right compared to the left hand. In addition, thumb-index responses were more prevalent for subjects that had a whorl compared to a loop or arch on their thumb. The results suggest that fingerprint patterns are associated with individual differences in grasping type in chimpanzees as well as some variation in hand use. PMID:15761856
Suebsuwong, Chalada; Pinkas, Daniel M; Ray, Soumya S; Bufton, Joshua C; Dai, Bing; Bullock, Alex N; Degterev, Alexei; Cuny, Gregory D
2018-02-15
Development of selective kinase inhibitors remains a challenge due to considerable amino acid sequence similarity among family members particularly in the ATP binding site. Targeting the activation loop might offer improved inhibitor selectivity since this region of kinases is less conserved. However, the strategy presents difficulties due to activation loop flexibility. Herein, we report the design of receptor-interacting protein kinase 2 (RIPK2) inhibitors based on pan-kinase inhibitor regorafenib that aim to engage basic activation loop residues Lys169 or Arg171. We report development of CSR35 that displayed >10-fold selective inhibition of RIPK2 versus VEGFR2, the target of regorafenib. A co-crystal structure of CSR35 with RIPK2 revealed a resolved activation loop with an ionic interaction between the carboxylic acid installed in the inhibitor and the side-chain of Lys169. Our data provides principle feasibility of developing activation loop targeting type II inhibitors as a complementary strategy for achieving improved selectivity. Copyright © 2018 The Author(s). Published by Elsevier Ltd.. All rights reserved.
NASA Astrophysics Data System (ADS)
Drouet, Julie; Dupuy, Laurent; Onimus, Fabien; Mompiou, Frédéric; Perusin, Simon; Ambard, Antoine
2014-06-01
The mechanical behavior of Pressurized Water Reactor fuel cladding tubes made of zirconium alloys is strongly affected by neutron irradiation due to the high density of radiation induced dislocation loops. In order to investigate the interaction mechanisms between gliding dislocations and loops in zirconium, a new nodal dislocation dynamics code, adapted to Hexagonal Close Packed metals, has been used. Various configurations have been systematically computed considering different glide planes, basal or prismatic, and different characters, edge or screw, for gliding dislocations with -type Burgers vectors. Simulations show various interaction mechanisms such as (i) absorption of a loop on an edge dislocation leading to the formation of a double super-jog, (ii) creation of a helical turn, on a screw dislocation, that acts as a strong pinning point or (iii) sweeping of a loop by a gliding dislocation. It is shown that the clearing of loops is more favorable when the dislocation glides in the basal plane than in the prismatic plane explaining the easy dislocation channeling in the basal plane observed after neutron irradiation by transmission electron microscopy.
Stoichiometry effect on the irradiation response in the microstructure of zirconium carbides
DOE Office of Scientific and Technical Information (OSTI.GOV)
Young Yang; Wei-Yang Lo; Clayton Dickerson
2014-11-01
Zone-refined ultra high pure ZrC with five C/Zr ratios ranging from 0.84 to 1.17 was irradiated using a 2 MeV proton beam at 1125 C. The stoichiometry effect on the irradiation response of ZrC microstructure was examined using transmission electron microscopy following the irradiation. The irradiated microstructures generally feature a high density of perfect dislocation loops particularly at away from the graphite precipitates, and the C/Zr ratio shows a notable effect on the size and density of dislocation loops. The dislocation loops are identified as interstitial type perfect loops, and it was indirectly proved that the dislocation loop core likelymore » consists of carbon atoms. Graphite precipitates that form with excess carbon in the super-stoichiometric ZrC are detrimental, and the dramatic increases in the size of and density of dislocation loops in the vicinity of graphite precipitates in ZrC phase were observed. Irradiationinduced faceted voids were only observed in ZrC0.95, which is attributed to the pre-existing dislocation lines as biased sinks for vacancies.« less
NASA Astrophysics Data System (ADS)
Ipatova, I.; Harrison, R. W.; Wady, P. T.; Shubeita, S. M.; Terentyev, D.; Donnelly, S. E.; Jimenez-Melero, E.
2018-04-01
We have performed proton irradiation of W and W-5wt.%Ta materials at 350 °C with a step-wise damage level increase up to 0.7 dpa and using two beam energies, namely 40 keV and 3 MeV, in order to probe the accumulation of radiation-induced lattice damage in these materials. Interstitial-type a/2 <111> dislocation loops are formed under irradiation, and their size increases in W-5Ta up to a loop width of 21 ± 4 nm at 0.3 dpa, where loop saturation takes place. In contrast, the loop length in W increases progressively up to 183 ± 50 nm at 0.7 dpa, whereas the loop width remains relatively constant at 29 ± 7 nm at >0.3 dpa, giving rise to dislocation strings. The dislocation loops and tangles are observed in both materials examined after a 3 MeV proton irradiation at 350 °C. Ta doping delays the evolution of radiation-induced dislocation structures in W, and can consequently impact the hydrogen isotope retention under plasma exposure.
Observation of a metric type N solar radio burst
Kong, Xiangliang; Chen, Yao; Feng, Shiwei; ...
2016-10-10
Type III and type-III-like radio bursts are produced by energetic electron beams guided along coronal magnetic fields. As a variant of type III bursts, Type N bursts appear as the letter "N" in the radio dynamic spectrum and reveal a magnetic mirror effect in coronal loops. Here, we report a well-observed N-shaped burst consisting of three successive branches at metric wavelength with both fundamental and harmonic components and a high brightness temperature (>10 9 K). We verify the burst as a true type N burst generated by the same electron beam from three aspects of the data. First, durations ofmore » the three branches at a given frequency increase gradually and may be due to the dispersion of the beam along its path. Second, the flare site, as the only possible source of non-thermal electrons, is near the western feet of large-scale closed loops. Third, the first branch and the following two branches are localized at different legs of the loops with opposite senses of polarization. We also find that the sense of polarization of the radio burst is in contradiction to the O-mode and there exists a fairly large time delay (~3–5 s) between the fundamental and harmonic components. Possible explanations accounting for these observations are presented. Finally, assuming the classical plasma emission mechanism, we can infer coronal parameters such as electron density and magnetic field near the radio source and make diagnostics on the magnetic mirror process.« less
A Robust H ∞ Controller for an UAV Flight Control System
López, J.
2015-01-01
The objective of this paper is the implementation and validation of a robust H ∞ controller for an UAV to track all types of manoeuvres in the presence of noisy environment. A robust inner-outer loop strategy is implemented. To design the H ∞ robust controller in the inner loop, H ∞ control methodology is used. The two controllers that conform the outer loop are designed using the H ∞ Loop Shaping technique. The reference vector used in the control architecture formed by vertical velocity, true airspeed, and heading angle, suggests a nontraditional way to pilot the aircraft. The simulation results show that the proposed control scheme works well despite the presence of noise and uncertainties, so the control system satisfies the requirements. PMID:26221622
Network community structure and loop coefficient method
NASA Astrophysics Data System (ADS)
Vragović, I.; Louis, E.
2006-07-01
A modular structure, in which groups of tightly connected nodes could be resolved as separate entities, is a property that can be found in many complex networks. In this paper, we propose a algorithm for identifying communities in networks. It is based on a local measure, so-called loop coefficient that is a generalization of the clustering coefficient. Nodes with a large loop coefficient tend to be core inner community nodes, while other vertices are usually peripheral sites at the borders of communities. Our method gives satisfactory results for both artificial and real-world graphs, if they have a relatively pronounced modular structure. This type of algorithm could open a way of interpreting the role of nodes in communities in terms of the local loop coefficient, and could be used as a complement to other methods.
Solid oxide fuel cell power plant with an anode recycle loop turbocharger
Saito, Kazuo; Skiba, Tommy; Patel, Kirtikumar H.
2015-07-14
An anode exhaust recycle turbocharger (100) has a turbocharger turbine (102) secured in fluid communication with a compressed oxidant stream within an oxidant inlet line (218) downstream from a compressed oxidant supply (104), and the anode exhaust recycle turbocharger (100) also includes a turbocharger compressor (106) mechanically linked to the turbocharger turbine (102) and secured in fluid communication with a flow of anode exhaust passing through an anode exhaust recycle loop (238) of the solid oxide fuel cell power plant (200). All or a portion of compressed oxidant within an oxidant inlet line (218) drives the turbocharger turbine (102) to thereby compress the anode exhaust stream in the recycle loop (238). A high-temperature, automotive-type turbocharger (100) replaces a recycle loop blower-compressor (52).
Solid oxide fuel cell power plant with an anode recycle loop turbocharger
Saito, Kazuo; Skiba, Tommy; Patel, Kirtikumar H.
2016-09-27
An anode exhaust recycle turbocharger (100) has a turbocharger turbine (102) secured in fluid communication with a compressed oxidant stream within an oxidant inlet line (218) downstream from a compressed oxidant supply (104), and the anode exhaust recycle turbocharger (100) also includes a turbocharger compressor (106) mechanically linked to the turbocharger turbine (102) and secured in fluid communication with a flow of anode exhaust passing through an anode exhaust recycle loop (238) of the solid oxide fuel cell power plant (200). All or a portion of compressed oxidant within an oxidant inlet line (218) drives the turbocharger turbine (102) to thereby compress the anode exhaust stream in the recycle loop (238). A high-temperature, automotive-type turbocharger (100) replaces a recycle loop blower-compressor (52).
Kabali, Conrad; Xie, Xuanqian; Higgins, Caroline
2017-01-01
Background Ambulatory electrocardiography (ECG) monitors are often used to detect cardiac arrhythmia. For patients with symptoms, an external cardiac loop recorder will often be recommended. The improved recording capacity of newer Holter monitors and similar devices, collectively known as longterm continuous ambulatory ECG monitors, suggests that they will perform just as well as, or better than, external loop recorders. This health technology assessment aimed to evaluate the effectiveness, cost-effectiveness, and budget impact of longterm continuous ECG monitors compared with external loop recorders in detecting symptoms of cardiac arrhythmia. Methods Based on our systematic search for studies published up to January 15, 2016, we did not identify any studies directly comparing the clinical effectiveness of longterm continuous ECG monitors and external loop recorders. Therefore, we conducted an indirect comparison, using a 24-hour Holter monitor as a common comparator. We used a meta-regression model to control for bias due to variation in device-wearing time and baseline syncope rate across studies. We conducted a similar systematic search for cost-utility and cost-effectiveness studies comparing the two types of devices; none were found. Finally, we used historical claims data (2006–2014) to estimate the future 5-year budget impact in Ontario, Canada, of continued public funding for both types of longterm ambulatory ECG monitors. Results Our clinical literature search yielded 7,815 non-duplicate citations, of which 12 cohort studies were eligible for indirect comparison. Seven studies assessed the effectiveness of longterm continuous monitors and five assessed external loop recorders. Both types of devices were more effective than a 24-hour Holter monitor, and we found no substantial difference between them in their ability to detect symptoms (risk difference 0.01; 95% confidence interval −0.18, 0.20). Using GRADE for network meta-analysis, we evaluated the quality of the evidence as low. Our budget impact analysis showed that use of the longterm continuous monitors has grown steadily in Ontario since they became publicly funded in 2006, particularly since 2011 when monitors that can record for 14 days or longer became funded, and the use of external cardiac loop recorders has correspondingly declined. The analysis suggests that, with these trends, continued public funding of both types of longterm ambulatory ECG testing will result in additional costs ranging from $130,000 to $370,000 per year over the next 5 years. Conclusions Although both longterm continuous ambulatory ECG monitors and external cardiac loop recorders were more effective than a 24-hour Holter monitor in detecting symptoms of cardiac arrhythmia, we found no evidence to suggest that these two devices differ in effectiveness. Assuming that the use of longterm continuous monitors will continue to increase in the next 5 years, the public health care system in Ontario can expect to see added costs of $130,000 to $370,000 per year. PMID:28194254
Hu, Lanying; Lim, Kah Wai; Bouaziz, Serge; Phan, Anh Tuân
2009-11-25
Recently, it has been shown that in K(+) solution the human telomeric sequence d[TAGGG(TTAGGG)(3)] forms a (3 + 1) intramolecular G-quadruplex, while the Bombyx mori telomeric sequence d[TAGG(TTAGG)(3)], which differs from the human counterpart only by one G deletion in each repeat, forms a chair-type intramolecular G-quadruplex, indicating an effect of G-tract length on the folding topology of G-quadruplexes. To explore the effect of loop length and sequence on the folding topology of G-quadruplexes, here we examine the structure of the four-repeat Giardia telomeric sequence d[TAGGG(TAGGG)(3)], which differs from the human counterpart only by one T deletion within the non-G linker in each repeat. We show by NMR that this sequence forms two different intramolecular G-quadruplexes in K(+) solution. The first one is a novel basket-type antiparallel-stranded G-quadruplex containing two G-tetrads, a G x (A-G) triad, and two A x T base pairs; the three loops are consecutively edgewise-diagonal-edgewise. The second one is a propeller-type parallel-stranded G-quadruplex involving three G-tetrads; the three loops are all double-chain-reversal. Recurrence of several structural elements in the observed structures suggests a "cut and paste" principle for the design and prediction of G-quadruplex topologies, for which different elements could be extracted from one G-quadruplex and inserted into another.
Han, Nanyu; Liu, Xuewei; Mu, Yuguang
2012-01-01
It is critical to understand the molecular basis of the drug resistance of influenza viruses to efficiently treat this infectious disease. Recently, H1N1 strains of influenza A carrying a mutation of Q136K in neuraminidase were found. The new strain showed a strong Zanamivir neutralization effect. In this study, normal molecular dynamics simulations and metadynamics simulations were employed to explore the mechanism of Zanamivir resistance. The wild-type neuraminidase contained a 310 helix before the 150 loop, and there was interaction between the 150 and 430 loops. However, the helix and the interaction between the two loops were disturbed in the mutant protein due to interaction between K136 and nearby residues. Hydrogen-bond network analysis showed weakened interaction between the Zanamivir drug and E276/D151 on account of the electrostatic interaction between K136 and D151. Metadynamics simulations showed that the free energy landscape was different in the mutant than in the wild-type neuraminidase. Conformation with the global minimum of free energy for the mutant protein was different from the wild-type conformation. While the drug fit completely into the active site of the wild-type neuraminidase, it did not match the active site of the mutant variant. This study indicates that the altered hydrogen-bond network and the deformation of the 150 loop are the key factors in development of Zanamivir resistance. Furthermore, the Q136K mutation has a variable effect on conformation of different N1 variants, with conformation of the 1918 N1 variant being more profoundly affected than that of the other N1 variants studied in this paper. This observation warrants further experimental investigation. PMID:22970161
An Exploration of Human Well-Being Bundles as Identifiers of Ecosystem Service Use Patterns
Biggs, Reinette; Reyers, Belinda
2016-01-01
We take a social-ecological systems perspective to investigate the linkages between ecosystem services and human well-being in South Africa. A recent paper identified different types of social-ecological systems in the country, based on distinct bundles of ecosystem service use. These system types were found to represent increasingly weak direct feedbacks between nature and people, from rural “green-loop” communities to urban “red-loop” societies. Here we construct human well-being bundles and explore whether the well-being bundles can be used to identify the same social-ecological system types that were identified using bundles of ecosystem service use. Based on national census data, we found three distinct well-being bundle types that are mainly characterized by differences in income, unemployment and property ownership. The distribution of these well-being bundles approximates the distribution of ecosystem service use bundles to a substantial degree: High levels of income and education generally coincided with areas characterised by low levels of direct ecosystem service use (or red-loop systems), while the majority of low well-being areas coincided with medium and high levels of direct ecosystem service use (or transition and green-loop systems). However, our results indicate that transformations from green-loop to red-loop systems do not always entail an immediate improvement in well-being, which we suggest may be due to a time lag between changes in the different system components. Using human well-being bundles as an indicator of social-ecological dynamics may be useful in other contexts since it is based on socio-economic data commonly collected by governments, and provides important insights into the connections between ecosystem services and human well-being at policy-relevant sub-national scales. PMID:27695120
Han, Nanyu; Liu, Xuewei; Mu, Yuguang
2012-01-01
It is critical to understand the molecular basis of the drug resistance of influenza viruses to efficiently treat this infectious disease. Recently, H1N1 strains of influenza A carrying a mutation of Q136K in neuraminidase were found. The new strain showed a strong Zanamivir neutralization effect. In this study, normal molecular dynamics simulations and metadynamics simulations were employed to explore the mechanism of Zanamivir resistance. The wild-type neuraminidase contained a 3(10) helix before the 150 loop, and there was interaction between the 150 and 430 loops. However, the helix and the interaction between the two loops were disturbed in the mutant protein due to interaction between K136 and nearby residues. Hydrogen-bond network analysis showed weakened interaction between the Zanamivir drug and E276/D151 on account of the electrostatic interaction between K136 and D151. Metadynamics simulations showed that the free energy landscape was different in the mutant than in the wild-type neuraminidase. Conformation with the global minimum of free energy for the mutant protein was different from the wild-type conformation. While the drug fit completely into the active site of the wild-type neuraminidase, it did not match the active site of the mutant variant. This study indicates that the altered hydrogen-bond network and the deformation of the 150 loop are the key factors in development of Zanamivir resistance. Furthermore, the Q136K mutation has a variable effect on conformation of different N1 variants, with conformation of the 1918 N1 variant being more profoundly affected than that of the other N1 variants studied in this paper. This observation warrants further experimental investigation.
Feng, Xudong; Tang, Heng; Han, Beijia; Zhang, Liang; Lv, Bo; Li, Chun
2016-12-01
In this study, we proposed a loop transplant strategy to improve the thermostability of Penicillium purpurogenum Li-3 β-glucuronidase expressed in Escherichia coli (abbreviated to PGUS-E). Firstly, three unstable surface loops of PGUS-E to be replaced were identified with regards to B-factor values and in-depth structure analysis: loops 205-211, 258-263, and 25-31. Then, based on B-factor analysis, eight stable loops for substitution were selected from two typical thermophilic glycosidases which had low homology with PGUS-E (less than 25 %). By analyzing the common features of these stable loops, it was found that they shared a common residue skeleton DXXTX(X)R, based on this, three chimera loops were also manually designed: RSQTSND, RSSTQRD, and DDQTSR. All these loops were introduced to replace the unstable loops of PGUS-E by homology structure modeling, and only mutants with increased hydrogen bonds number and good compatibility with the local mutated region were further subjected to experimental verification. By using this strategy, 10 mutants were experimentally generated, among which three mutants, M1, M3, and M8, were obtained which showed 11.8, 3.3, and 9.4 times higher half-life at 70 °C than that of wild-type (8.5 min). Finally, the MD simulation indicated that the increased hydrogen bonds, decreased flexibility of N-terminal, and increased π-π stacking interaction were responsible for the improved thermostability.
Yi, Xiaoou; Culham Science Centre, Abingdon; Jenkins, Michael L.; ...
2015-04-21
The displacement damage induced in bulk W and W-5 wt.% Re and W-5 wt.% Ta alloys by 2 MeV W + irradiation to doses 3.3×10 17 - 2.5×10 19 W +/m 2 at temperatures ranging from 300 to750°C has been characterized by transmission electron microscopy. An automated sizing and counting approach based on Image J has been proposed and performed for all irradiation data. In all cases the damage comprised dislocation loops, mostly of interstitial type, with Burgers vectors b = ½<111> (> 60%) and b = <100>. The diameters of loops did not exceed 20 nm, with the majoritymore » being ≤ 6 nm. The loop number density varied between 10 22 and 10 23 loops/m 3 . With increasing irradiation temperature, the loop size distributions shifted towards larger sizes, and there was a substantial decrease in loop number densities. The damage microstructure was less sensitive to dose than to temperature. Under the same irradiation conditions, loop number densities in the alloys were higher than in pure W but loops were smaller. In grains with normals close to z = <001>, loop strings developed in W at temperatures ≥ 500°C and doses ≥ 1.2 dpa, but such strings were not observed in the W-Re or W-Ta alloys. However, in other grain orientations complex structures appeared in all materials and dense dislocation networks formed at higher doses.« less
VizieR Online Data Catalog: 6 & 1.3cm deep VLA obs. toward 58 high-mass SFRs (Rosero+, 2016)
NASA Astrophysics Data System (ADS)
Rosero, V.; Hofner, P.; Claussen, M.; Kurtz, S.; Cesaroni, R.; Araya, E. D.; Carrasco-Gonzalez, C.; Rodriguez, L. F.; Menten, K. M.; Wyrowski, F.; Loinard, L.; Ellingsen, S. P.
2017-01-01
VLA continuum observations (project codes 10B-124 and 13B-210) at 6 and 1.3cm were made for all sources in the sample. The 6cm observations were made in the A configuration between 2011 June and August, providing a typical angular resolution of about 0.4". The 1.3cm observations were made in the B configuration, acquiring the first half of the data between 2010 November and 2011 May, and the second half between 2013 November and 2014 January. (2 data files).
DOE Office of Scientific and Technical Information (OSTI.GOV)
Yan Changshuo; Wang Jianmin, E-mail: wangjm@ihep.ac.c
High spatial resolution observations show that high-redshift galaxies are undergoing intensive evolution of dynamical structure and morphologies displayed by the H{alpha}, H{beta}, [O III], and [N II] images. It has been shown that supernova explosion (SNexp) of young massive stars during the star formation epoch, as kinetic feedback to host galaxies, can efficiently excite the turbulent viscosity. We incorporate the feedback into the dynamical equations through mass dropout and angular momentum transportation driven by the SNexp-excited turbulent viscosity. The empirical Kennicutt-Schmidt law is used for star formation rates (SFRs). We numerically solve the equations and show that there can bemore » intensive evolution of structure of the gaseous disk. Secular evolution of the disk shows interesting characteristics: (1) high viscosity excited by SNexp can efficiently transport the gas from 10 kpc to {approx}1 kpc forming a stellar disk whereas a stellar ring forms for the case with low viscosity; (2) starbursts trigger SMBH activity with a lag of {approx}10{sup 8} yr depending on SFRs, prompting the joint evolution of SMBHs and bulges; and (3) the velocity dispersion is as high as {approx}100 km s{sup -1} in the gaseous disk. These results are likely to vary with the initial mass function (IMF) that the SNexp rates rely on. Given the IMF, we use the GALAXEV code to compute the spectral evolution of stellar populations based on the dynamical structure. In order to compare the present models with the observed dynamical structure and images, we use the incident continuum from the simple stellar synthesis and CLOUDY to calculate emission line ratios of H{alpha}, H{beta}, [O III], and [N II], and H{alpha} brightness of gas photoionized by young massive stars formed on the disks. The models can produce the main features of emission from star-forming galaxies. We apply the present model to two galaxies, BX 389 and BX 482 observed in the SINS high-z sample, which are bulge and disk-dominated, respectively. Two successive rings independently evolving are able to reproduce the main dynamical and emission properties of the two galaxies, such as the Baldwin-Phillips-Terlevich diagram, the relation between line ratios, and H{alpha} brightness. The observed relation between turbulent velocity and the H{alpha} brightness can be explained by the present model. High viscosity excited by SNexp is able to efficiently transport the gas into a bulge to maintain high SFRs or to form a stellar ring close enough to the bulge so that it immigrates into the bulge of its host galaxy. This leads to a fast growing bulge. Implications and future work of the present models have been extensively discussed for galaxy formation in high-z universe.« less
Steady State Model for Solar Coronal Loops
NASA Astrophysics Data System (ADS)
Sugiyama, L.; Asgari-Targhi, M.
2017-12-01
Solar coronal loops on the surface of the sun provide background magnetic and plasma structures for the release of a significant amount of the sun's energy, through energetic solar flares and coronal mass ejections and more gradual processes. Understanding their steady states is the first step in understanding loop dynamics. A consistent MHD steady state model, for a curved magnetic flux rope that contains plasma, has been developed[1] for simple coronal loops with both ends anchored in the photosphere. Plasma pressure or current makes the loop unstable to expansion in major radius and must be balanced by external forces, such as the solar gravity. The MHD momentum equation has a well defined small parameter ordering in the loop inverse aspect ratio ɛ=a/Ro (minor/major radius). Different types of common coronal loops fall in different parameter regimes, determined by the relative values of the plasma beta β=po/(Bo2/2μo), the MHD gravity parameter Ĝ≡ga/vA2 (the gravitational acceleration g normalized to the minor radius a and shear Alfvén velocity vA), and ɛ. The largest possible gravity, Ĝ ɛ1β, corresponds to the largest loops because it reduces the plasma density at the top of the loop exponentially compared to its lower ends, reducing the downward gravitational force -ρĜ there. The thin loops that are ubiquitous in solar active regions have ``high'' beta, β ɛ1, for ɛ≃0.02, and fit the predicted model scalings. The thicker loops that can give rise to flares and CMEs have ``low'' beta, β ɛ2. Cool loops, such as solar filaments outside active regions, that have a central pressure lower than that of the surrounding corona would have the strongest stability against radial expansion. The model raises a number of questions about the connection of loops to the photosphere and the force-free nature of the magnetic field there. [1] L. Sugiyama, M. Asgari-Targhi, Phys. Plasmas 24, 022904 (2017).
Parikh, Punam P; Tashiro, Jun; Wagenaar, Amy E; Curbelo, Miosotys; Perez, Eduardo A; Neville, Holly L; Hogan, Anthony R; Sola, Juan E
2018-04-01
Appendiceal ligation during pediatric laparoscopic appendectomy (LA) may be performed using looped suture versus stapler. Controversy regarding the utility of either method exists. Clinical outcomes and cost analysis of LA with both methods were compared. All pediatric LA were performed from fiscal years 2013 and 2014 by two pediatric surgeons. While one surgeon used looped suture, the other used stapler exclusively. chi-Square tests were performed to analyze associations. Two hundred thirty-eight cases were analyzed where looped suture versus stapler LA was performed in 46% and 54% of patients, respectively. Operating room costs were $317.10 and $707.12/person for looped suture and stapler LA, respectively (P<0.0001). Difference in cost of $390.02/person was attributed solely to ligation type. On bivariate analysis, rate of in-hospital complications, length of stay, return-to-ER and readmission within 30 days did not significantly differ between groups. A comparative analysis of looped suture versus stapler device during LA for pediatric appendicitis revealed that postoperative complications, length of stay, ER visits and readmissions were not significantly different. Looped suture LA was significantly more cost efficient than stapler LA. In pediatric appendicitis, appendiceal ligation during LA may be performed safely and cost effectively with looped suture versus stapler. Cost effectiveness LEVEL OF EVIDENCE: III. Copyright © 2017 Elsevier Inc. All rights reserved.
Corrosion of type 316L stainless steel in a mercury thermal convection loop
DOE Office of Scientific and Technical Information (OSTI.GOV)
DiStefano, J.R.; Manneschmidt, E.T.; Pawel, S.J.
1999-04-01
Two thermal convection loops fabricated from 316L stainless steel containing mercury (Hg) and Hg with 1000 wppm gallium (Ga), respectively, were operated continuously for about 5000 h. In each case, the maximum loop temperature was constant at about 305 degrees C and the minimum temperature was constant at about 242 degrees C. Coupons in the hot leg of the Hg-loop developed a posous surface layer substantially depleted of nickel and chromium, which resulted in a transformation to ferrite. The coupon exposed at the top of the hot leg in the Hg-loop experienced the maximum degradation, exhibiting a surface layer extendingmore » an average of 9-10 mu m after almost 5000 h. Analysis of the corrosion rate data as a function of temperature (position) in the Hg-loop suggests wetting by the mer cury occurred only above about 255 degrees C and that the rate limiting step in the corrosion process above 255 degrees C is solute diffusion through the saturated liquid boundary layer adjacent to the corroding surface. The latter factor suggests that the corrosion of 316L stainless steel in a mercury loop may be velocity dependent. No wetting and no corrosion were observed on the coupons and wall specimens removed from the Hg/Ga loop after 5000 h of operation.« less
Gharu, Lavina; Ringe, Rajesh; Satyakumar, Anupindi; Patil, Ajit; Bhattacharya, Jayanta
2011-02-01
Abstract HIV-1 clade C is the major subtype circulating in India and preferentially uses CCR5 during the entire disease course. We have recently shown that env clones from an Indian patient; NARI-VB105 uses multiple coreceptors for entry and was presented with an unusual V3 loop sequence giving rise to high net V3 loop positive charges. Here we show that env clones belonging to subtype C obtained from an AIDS patient, NARI-VB52, use CXCR6 and CCR8 in addition to CCR5 for entry. However, unlike the NARI-105 patient, the env clones contained a low V3 loop net charge of +3 with a conserved GPGQ motif typical of CCR5 using subtype C strains, indicating that residues outside the V3 loop contributed to extended coreceptor use in this particular patient.
In and out of the loop: external and internal modulation of the olivo-cerebellar loop
Libster, Avraham M.; Yarom, Yosef
2013-01-01
Cerebellar anatomy is known for its crystal like structure, where neurons and connections are precisely and repeatedly organized with minor variations across the Cerebellar Cortex. The olivo-cerebellar loop, denoting the connections between the Cerebellar cortex, Inferior Olive and Cerebellar Nuclei (CN), is also modularly organized to form what is known as the cerebellar module. In contrast to the relatively organized and static anatomy, the cerebellum is innervated by a wide variety of neuromodulator carrying axons that are heterogeneously distributed along the olivo-cerebellar loop, providing heterogeneity to the static structure. In this manuscript we review modulatory processes in the olivo-cerebellar loop. We start by discussing the relationship between neuromodulators and the animal behavioral states. This is followed with an overview of the cerebellar neuromodulatory signals and a short discussion of why and when the cerebellar activity should be modulated. We then devote a section for three types of neurons where we briefly review its properties and propose possible neuromodulation scenarios. PMID:23626524
Lühr, B; Scheller, J; Meyer, P; Kramer, W
1998-02-01
We have analysed the correction of defined mismatches in wild-type and msh2, msh3, msh6 and msh3 msh6 mutants of Saccharomyces cerevisiae in two different yeast strain backgrounds by transformation with plasmid heteroduplex DNA constructs. Ten different base/base mismatches, two single-nucleotide loops and a 38-nucleotide loop were tested. Repair of all types of mismatches was severely impaired in msh2 and msh3 msh6 mutants. In msh6 mutants, repair efficiency of most base/base mismatches was reduced to a similar extent as in msh3 msh6 double mutants. G/T and A/C mismatches, however, displayed residual repair in msh6 mutants in one strain background, implying a role for Msh3p in recognition of base/base mismatches. Furthermore, the efficiency of repair of base/base mismatches was considerably reduced in msh3 mutants in one strain background, indicating a requirement for MSH3 for fully efficient mismatch correction. Also the efficiency of repair of the 38-nucleotide loop was reduced in msh3 mutants, and to a lesser extent in msh6 mutants. The single-nucleotide loop with an unpaired A was less efficiently repaired in msh3 mutants and that with an unpaired T was less efficiently corrected in msh6 mutants, indicating non-redundant functions for the two proteins in the recognition of single-nucleotide loops.
Zhai, Xiang; Go, Maybelle K; O'Donoghue, AnnMarie C; Amyes, Tina L; Pegan, Scott D; Wang, Yan; Loria, J Patrick; Mesecar, Andrew D; Richard, John P
2014-06-03
Two mutations of the phosphodianion gripper loop in chicken muscle triosephosphate isomerase (cTIM) were examined: (1) the loop deletion mutant (LDM) formed by removal of residues 170-173 [Pompliano, D. L., et al. (1990) Biochemistry 29, 3186-3194] and (2) the loop 6 replacement mutant (L6RM), in which the N-terminal hinge sequence of TIM from eukaryotes, 166-PXW-168 (X = L or V), is replaced by the sequence from archaea, 166-PPE-168. The X-ray crystal structure of the L6RM shows a large displacement of the side chain of E168 from that for W168 in wild-type cTIM. Solution nuclear magnetic resonance data show that the L6RM results in significant chemical shift changes in loop 6 and surrounding regions, and that the binding of glycerol 3-phosphate (G3P) results in chemical shift changes for nuclei at the active site of the L6RM that are smaller than those of wild-type cTIM. Interactions with loop 6 of the L6RM stabilize the enediolate intermediate toward the elimination reaction catalyzed by the LDM. The LDM and L6RM result in 800000- and 23000-fold decreases, respectively, in kcat/Km for isomerization of GAP. Saturation of the LDM, but not the L6RM, by substrate and inhibitor phosphoglycolate is detected by steady-state kinetic analyses. We propose, on the basis of a comparison of X-ray crystal structures for wild-type TIM and the L6RM, that ligands bind weakly to the L6RM because a large fraction of the ligand binding energy is utilized to overcome destabilizing electrostatic interactions between the side chains of E168 and E129 that are predicted to develop in the loop-closed enzyme. Similar normalized yields of DHAP, d-DHAP, and d-GAP are formed in LDM- and L6RM-catalyzed reactions of GAP in D2O. The smaller normalized 12-13% yield of DHAP and d-DHAP observed for the mutant cTIM-catalyzed reactions compared with the 79% yield of these products for wild-type cTIM suggests that these mutations impair the transfer of a proton from O-2 to O-1 at the initial enediolate phosphate intermediate. No products are detected for the LDM-catalyzed isomerization reactions in D2O of [1-(13)C]GA and HPi, but the L6RM-catalyzed reaction in the presence of 0.020 M dianion gives a 2% yield of the isomerization product [2-(13)C,2-(2)H]GA.
Highly sensitive self-complementary DNA nanoswitches triggered by polyelectrolytes
NASA Astrophysics Data System (ADS)
Wu, Jincai; Yu, Feng; Zhang, Zheng; Chen, Yong; Du, Jie; Maruyama, Atsushi
2015-12-01
Dimerization of two homologous strands of genomic DNA/RNA is an essential feature of retroviral replication. Herein we show that a cationic comb-type copolymer (CCC), poly(l-lysine)-graft-dextran, accelerates the dimerization of self-complementary stem-loop DNA, frequently found in functional DNA/RNA molecules, such as aptamers. Furthermore, an anionic polymer poly(sodium vinylsulfonate) (PVS) dissociates CCC from the duplex shortly within a few seconds. Then single stem-loop DNA spontaneously transforms from its dimer. Thus we can easily control the dimer and stem-loop DNA by switching on/off CCC activity. Both polyelectrolytes and DNA concentrations are in the nanomole per liter range. The polyelectrolyte-assisted transconformation and sequences design strategy ensures the reversible state control with rapid response and effective switching under physiologically relevant conditions. A further application of this sensitive assembly is to construct an aptamer-type drug delivery system, bind or release functional molecules responding to its transconformation.Dimerization of two homologous strands of genomic DNA/RNA is an essential feature of retroviral replication. Herein we show that a cationic comb-type copolymer (CCC), poly(l-lysine)-graft-dextran, accelerates the dimerization of self-complementary stem-loop DNA, frequently found in functional DNA/RNA molecules, such as aptamers. Furthermore, an anionic polymer poly(sodium vinylsulfonate) (PVS) dissociates CCC from the duplex shortly within a few seconds. Then single stem-loop DNA spontaneously transforms from its dimer. Thus we can easily control the dimer and stem-loop DNA by switching on/off CCC activity. Both polyelectrolytes and DNA concentrations are in the nanomole per liter range. The polyelectrolyte-assisted transconformation and sequences design strategy ensures the reversible state control with rapid response and effective switching under physiologically relevant conditions. A further application of this sensitive assembly is to construct an aptamer-type drug delivery system, bind or release functional molecules responding to its transconformation. Electronic supplementary information (ESI) available: I. Sequences of DIS25, DIS25-2a and DIS25-3a. II. Structural formula of poly(l-lysine)-graft-dextran (PLL-g-Dex). 1H-NMR spectra of PLL-g-Dex in D2O. III. Gel electrophoretic analysis of dimerization of DIS25 with various N/P ratios. IV. The effect of polyelectrolyte on the fluorescence polarity of TAMRA-labeled duplex. V. UV absorption/Tm profiles of DIS25. VI. Arrhenius plots for spontaneous dissociation of the DIS25 dimer and PLL-g-Dex-assisted dimerization of DIS25.VII. Switching between double stem-loop DIS42 and extended multiplex drived by PLL-g-Dex and PVS. See DOI: 10.1039/c5nr05193b
Current trend in drug delivery considerations for subcutaneous insulin depots to treat diabetes.
P V, Jayakrishnapillai; Nair, Shantikumar V; Kamalasanan, Kaladhar
2017-05-01
Diabetes mellitus (DM) is a metabolic disorder due to irregularities in glucose metabolism, as a result of insulin disregulation. Chronic DM (Type 1) is treated by daily insulin injections by subcutaneous route. Daily injections cause serious patient non-compliance and medication non-adherence. Insulin Depots (ID) are parenteral formulations designed to release the insulin over a specified period of time, to control the plasma blood glucose level for intended duration. Physiologically, pancreas produces and secretes insulin in basal and pulsatile mode into the blood. Delivery systems mimicking basal release profiles are known as open-loop systems and current marketed products are open-loop systems. Future trend in open-loop systems is to reduce the number of injections per week by enhancing duration of action, by modifying the depot properties. The next generation technologies are closed-loop systems that mimic the pulsatile mode of delivery by pancreas. In closed-loop systems insulin will be released in response to plasma glucose. This review focuses on future trend in open-loop systems; by understanding (a) the secretion of insulin from pancreas, (b) the insulin regulation normal and in DM, (c) insulin depots and (d) the recent progress in open-loop depot technology particularly with respect to nanosystems. Copyright © 2017 Elsevier B.V. All rights reserved.
A LabVIEW model incorporating an open-loop arterial impedance and a closed-loop circulatory system.
Cole, R T; Lucas, C L; Cascio, W E; Johnson, T A
2005-11-01
While numerous computer models exist for the circulatory system, many are limited in scope, contain unwanted features or incorporate complex components specific to unique experimental situations. Our purpose was to develop a basic, yet multifaceted, computer model of the left heart and systemic circulation in LabVIEW having universal appeal without sacrificing crucial physiologic features. The program we developed employs Windkessel-type impedance models in several open-loop configurations and a closed-loop model coupling a lumped impedance and ventricular pressure source. The open-loop impedance models demonstrate afterload effects on arbitrary aortic pressure/flow inputs. The closed-loop model catalogs the major circulatory waveforms with changes in afterload, preload, and left heart properties. Our model provides an avenue for expanding the use of the ventricular equations through closed-loop coupling that includes a basic coronary circuit. Tested values used for the afterload components and the effects of afterload parameter changes on various waveforms are consistent with published data. We conclude that this model offers the ability to alter several circulatory factors and digitally catalog the most salient features of the pressure/flow waveforms employing a user-friendly platform. These features make the model a useful instructional tool for students as well as a simple experimental tool for cardiovascular research.
Zhao, Shijun; Zhang, Yanwen; Weber, William J.
2017-10-17
Using first-principles calculations based on density-functional theory, the energetics of different vacancy-type defects, including voids, stacking fault tetrahedra (SFT) and vacancy loops, in Ni are investigated. It is found that voids are more stable than SFT at 0 K, which is also the case after taking into account the volumetric strains. By carrying out ab initio molecular dynamics simulations at temperatures up to 1000 K, direct transformations from vacancy loops and voids into SFT are observed. Our results suggest the importance of temperature effects in determining thermodynamic stability of vacancy clusters in face-centered cubic metals.
NASA Astrophysics Data System (ADS)
Stolnitz, Mikhail M.; Medvedev, Boris A.; Gribko, Tatyana V.
2004-05-01
The semi-phenomenological model of epidermal cell dynamics is submitted. The model takes into account three types of basal layer keratinocytes (stem, transient amplifying, terminally differentiated), distribution of first two types cells on mitotic cycle stages and resting states, keratinocytes-lymphocytes interactions that provide a positive feedback loop, influence of more differentiated cells on their progenitors that provide a negative feedback loop. Simplified model are developed and its stationary solutions are received. The opportunity of interpretation of some received modes as corresponding to various stages of psoriasis is discussed. Influence of UV-radiation on transitions between various modes of epidermis functioning is qualitatively analyzed.
Jin, Feng Jie; Takahashi, Tadashi; Machida, Masayuki; Koyama, Yasuji
2009-09-01
We previously developed two methods (loop-out and replacement-type recombination) for generating large-scale chromosomal deletions that can be applied to more effective chromosomal engineering in Aspergillus oryzae. In this study, the replacement-type method is used to systematically delete large chromosomal DNA segments to identify essential and nonessential regions in chromosome 7 (2.93 Mb), which is the smallest A. oryzae chromosome and contains a large number of nonsyntenic blocks. We constructed 12 mutants harboring deletions that spanned 16- to 150-kb segments of chromosome 7 and scored phenotypic changes in the resulting mutants. Among the deletion mutants, strains designated Delta5 and Delta7 displayed clear phenotypic changes involving growth and conidiation. In particular, the Delta5 mutant exhibited vigorous growth and conidiation, potentially beneficial characteristics for certain industrial applications. Further deletion analysis allowed identification of the AO090011000215 gene as the gene responsible for the Delta5 mutant phenotype. The AO090011000215 gene was predicted to encode a helix-loop-helix binding protein belonging to the bHLH family of transcription factors. These results illustrate the potential of the approach for identifying novel functional genes.
Toward Automation of Insulin Delivery - Management Solutions for Type 1 Diabetes.
Nimri, Revital; Phillip, Moshe
2016-01-01
In the past decade, the field of type 1 diabetes was characterized by the efforts to integrate technology into the daily management of diabetes. Automated insulin delivery systems have emerged followed by the improvements in technology of pumps and sensors and automated close-loop systems that were developed around the world for overnight as well as for day and night use. Initially, these closed-loop systems were tested clinically in research centers, then at diabetes camps or hotels, and recently at patients' homes. The systems were tested in a wide range of populations of patients with type 1 diabetes: children, adolescents, adults, newly diagnosed, well and suboptimally controlled patients, the critically ill and pregnant women. The extensive clinical evaluation found these close-loop systems to be safe and efficient in controlling blood glucose levels. Now is the time to take these systems from research to industry and to get a regulatory approval of convenient devices for the use at home. Automated insulin delivery systems have the potential to change the way diabetes is treated and managed for the benefit of patients. This chapter summarizes the recent advances in this field. © 2016 S. Karger AG, Basel.
LOOPREF: A Fluid Code for the Simulation of Coronal Loops
NASA Technical Reports Server (NTRS)
deFainchtein, Rosalinda; Antiochos, Spiro; Spicer, Daniel
1998-01-01
This report documents the code LOOPREF. LOOPREF is a semi-one dimensional finite element code that is especially well suited to simulate coronal-loop phenomena. It has a full implementation of adaptive mesh refinement (AMR), which is crucial for this type of simulation. The AMR routines are an improved version of AMR1D. LOOPREF's versatility makes is suitable to simulate a wide variety of problems. In addition to efficiently providing very high resolution in rapidly changing regions of the domain, it is equipped to treat loops of variable cross section, any non-linear form of heat conduction, shocks, gravitational effects, and radiative loss.
Grip preference, dermatoglyphics, and hand use in captive chimpanzees (Pan troglodytes).
Hopkins, William D; Russell, Jamie L; Hostetter, Autumn; Pilcher, Dawn; Dahl, Jeremy F
2005-09-01
This paper examined the association between grip type, hand use, and fingerprint patterns in a sample of captive chimpanzees. Grip type for simple reaching was assessed for the left and right hand and classified as thumb-index, middle-index, or single-digit responses. Fingerprint patterns were characterized as whorls, loops, or arches on each finger. The results indicated that chimpanzees exhibit significantly more thumb-index responses for the right compared to the left hand. In addition, thumb-index responses were more prevalent for subjects that had a whorl compared to a loop or arch on their thumb. The results suggest that fingerprint patterns are associated with individual differences in grasping type in chimpanzees as well as some variation in hand use. (c) 2005 Wiley-Liss, Inc.
Purification of bacteriophage lambda repressor
Gao, Ning; Shearwin, Keith; Mack, John; Finzi, Laura; Dunlap, David
2013-01-01
Bacteriophage lambda repressor controls the lysogeny/lytic growth switch after infection of E. coli by lambda phage. In order to study in detail the looping of DNA mediated by the protein, tag-free repressor and a loss-of-cooperativity mutant were expressed in E.coli and purified by (1) ammonium sulfate fractionation, (2) anion-exchange chromatography and (3) heparin affinity chromatography. This method employs more recently developed and readily available chromatography resins to produce highly pure protein in good yield. In tethered particle motion looping assays and atomic force microscopy “footprinting” assays, both the wild-type protein and a C-terminal His-tagged variant, purified using immobilized metal affinity chromatography, bound specifically to high affinity sites to mediate loop formation. In contrast the G147D loss-of-cooperativity mutant bound specifically but did not secure loops. PMID:23831434
Fingerprints: A simple method for Screening Hemophilic Patients.
Jamalian, M; Mesri, M; Vishteh, H R K; Solhi, H; Salehpour, R
2014-08-01
The present study aims to compare hemophilic patients' fingerprint types with the normal people to help diagnose the disease, particularly new occurrences of the disease. This case-control study was conducted in 2012. Sixty two patients with hemophilia type A and 62 normal healthy people were selected. The type of fingerprint was determined by a forensic specialist who was kept unaware of the participants' group. Using advanced Henry method, the main types of fingerprints were classified as arch, loop, whorl, as well as other types. In the control group, loop type (65%) and in the case group the whorl type (34%) were the most frequent fingerprint type (p < 0.001) and there was a significant difference of fingerprint in each finger between two groups. In addition, the average number of whorl type in the patients with mild disease was significantly higher and the average number of arch and other types of fingerprints was significantly lower than patients with moderate or severe disease. The findings of the present study indicated that not only are the fingerprints of normal and hemophilic people different, but also a difference was observed between hemophilic patients with the mild factor level and patients with moderate or severe one.
Active parallel redundancy for electronic integrator-type control circuits
NASA Technical Reports Server (NTRS)
Peterson, R. A.
1971-01-01
Circuit extends concept of redundant feedback control from type-0 to type-1 control systems. Inactive channels are slaves to the active channel, if latter fails, it is rejected and slave channel is activated. High reliability and elimination of single-component catastrophic failure are important in closed-loop control systems.
Functional analysis of a viroid RNA motif mediating cell-to-cell movement in Nicotiana benthamiana.
Jiang, Dongmei; Wang, Meng; Li, Shifang
2017-01-01
Cell-to-cell trafficking through different cellular layers is a key process for various RNAs including those of plant viruses and viroids, but the regulatory mechanisms involved are still not fully elucidated and good model systems are important. Here, we analyse the function of a simple RNA motif (termed 'loop19') in potato spindle tuber viroid (PSTVd) which is required for trafficking in Nicotiana benthamiana leaves. Northern blotting, reverse transcriptase PCR (RT-PCR) and in situ hybridization analyses demonstrated that unlike wild-type PSTVd, which was present in the nuclei in all cell types, the trafficking-defective loop19 mutants were visible only in the nuclei of upper epidermal and palisade mesophyll cells, which shows that PSTVd loop19 plays a role in mediating RNA trafficking from palisade to spongy mesophyll cells in N.benthamiana leaves. Our findings and approaches have broad implications for studying the RNA motifs mediating trafficking of RNAs across specific cellular boundaries in other biological systems.
Arya, Preeti; Acharya, Vishal
2018-02-01
STAND P-loop NTPase is the common weapon used by plant and other organisms from all three kingdoms of life to defend themselves against pathogen invasion. The purpose of this study is to review comprehensively the latest finding of plant STAND P-loop NTPase related to their genomic distribution, evolution, and their mechanism of action. Earlier, the plant STAND P-loop NTPase known to be comprised of only NBS-LRRs/AP-ATPase/NB-ARC ATPase. However, recent finding suggests that genome of early green plants comprised of two types of STAND P-loop NTPases: (1) mammalian NACHT NTPases and (2) NBS-LRRs. Moreover, YchF (unconventional G protein and members of P-loop NTPase) subfamily has been reported to be exceptionally involved in biotic stress (in case of Oryza sativa), thereby a novel member of STAND P-loop NTPase in green plants. The lineage-specific expansion and genome duplication events are responsible for abundance of plant STAND P-loop NTPases; where "moderate tandem and low segmental duplication" trajectory followed in majority of plant species with few exception (equal contribution of tandem and segmental duplication). Since the past decades, systematic research is being investigated into NBS-LRR function supported the direct recognition of pathogen or pathogen effectors by the latest models proposed via 'integrated decoy' or 'sensor domains' model. Here, we integrate the recently published findings together with the previous literature on the genomic distribution, evolution, and distinct models proposed for functional molecular mechanism of plant STAND P-loop NTPases.
Analytic Result for the Two-loop Six-point NMHV Amplitude in N = 4 Super Yang-Mills Theory
DOE Office of Scientific and Technical Information (OSTI.GOV)
Dixon, Lance J.; /SLAC; Drummond, James M.
2012-02-15
We provide a simple analytic formula for the two-loop six-point ratio function of planar N = 4 super Yang-Mills theory. This result extends the analytic knowledge of multi-loop six-point amplitudes beyond those with maximal helicity violation. We make a natural ansatz for the symbols of the relevant functions appearing in the two-loop amplitude, and impose various consistency conditions, including symmetry, the absence of spurious poles, the correct collinear behavior, and agreement with the operator product expansion for light-like (super) Wilson loops. This information reduces the ansatz to a small number of relatively simple functions. In order to fix these parametersmore » uniquely, we utilize an explicit representation of the amplitude in terms of loop integrals that can be evaluated analytically in various kinematic limits. The final compact analytic result is expressed in terms of classical polylogarithms, whose arguments are rational functions of the dual conformal cross-ratios, plus precisely two functions that are not of this type. One of the functions, the loop integral {Omega}{sup (2)}, also plays a key role in a new representation of the remainder function R{sub 6}{sup (2)} in the maximally helicity violating sector. Another interesting feature at two loops is the appearance of a new (parity odd) x (parity odd) sector of the amplitude, which is absent at one loop, and which is uniquely determined in a natural way in terms of the more familiar (parity even) x (parity even) part. The second non-polylogarithmic function, the loop integral {tilde {Omega}}{sup (2)}, characterizes this sector. Both {Omega}{sup (2)} and {tilde {Omega}}{sup (2)} can be expressed as one-dimensional integrals over classical polylogarithms with rational arguments.« less
The Quest for Dusty Star-forming Galaxies at High Redshift z ≳ 4
NASA Astrophysics Data System (ADS)
Mancuso, C.; Lapi, A.; Shi, J.; Gonzalez-Nuevo, J.; Aversa, R.; Danese, L.
2016-06-01
We exploit the continuity equation approach and “main-sequence” star formation timescales to show that the observed high abundance of galaxies with stellar masses ≳ a few 1010 M ⊙ at redshift z ≳ 4 implies the existence of a galaxy population featuring large star formation rates (SFRs) ψ ≳ 102 M ⊙ yr-1 in heavily dust-obscured conditions. These galaxies constitute the high-redshift counterparts of the dusty star-forming population already surveyed for z ≲ 3 in the far-IR band by the Herschel Space Observatory. We work out specific predictions for the evolution of the corresponding stellar mass and SFR functions out to z ˜ 10, determining that the number density at z ≲ 8 for SFRs ψ ≳ 30 M ⊙ yr-1 cannot be estimated relying on the UV luminosity function alone, even when standard corrections for dust extinction based on the UV slope are applied. We compute the number counts and redshift distributions (including galaxy-scale gravitational lensing) of this galaxy population, and show that current data from the AzTEC-LABOCA, SCUBA-2, and ALMA-SPT surveys are already addressing it. We demonstrate how an observational strategy based on color preselection in the far-IR or (sub-)millimeter band with Herschel and SCUBA-2, supplemented by photometric data from on-source observations with ALMA, can allow us to reconstruct the bright end of the SFR functions out to z ≲ 8. In parallel, such a challenging task can be managed by exploiting current UV surveys in combination with (sub-)millimeter observations by ALMA and NIKA2 and/or radio observations by SKA and its precursors.
DOE Office of Scientific and Technical Information (OSTI.GOV)
Koepferl, Christine M.; Robitaille, Thomas P.; Dale, James E., E-mail: koepferl@usm.lmu.de
Through an extensive set of realistic synthetic observations (produced in Paper I), we assess in this part of the paper series (Paper III) how the choice of observational techniques affects the measurement of star formation rates (SFRs) in star-forming regions. We test the accuracy of commonly used techniques and construct new methods to extract the SFR, so that these findings can be applied to measure the SFR in real regions throughout the Milky Way. We investigate diffuse infrared SFR tracers such as those using 24 μ m, 70 μ m and total infrared emission, which have been previously calibrated formore » global galaxy scales. We set up a toy model of a galaxy and show that the infrared emission is consistent with the intrinsic SFR using extra-galactic calibrated laws (although the consistency does not prove their reliability). For local scales, we show that these techniques produce completely unreliable results for single star-forming regions, which are governed by different characteristic timescales. We show how calibration of these techniques can be improved for single star-forming regions by adjusting the characteristic timescale and the scaling factor and give suggestions of new calibrations of the diffuse star formation tracers. We show that star-forming regions that are dominated by high-mass stellar feedback experience a rapid drop in infrared emission once high-mass stellar feedback is turned on, which implies different characteristic timescales. Moreover, we explore the measured SFRs calculated directly from the observed young stellar population. We find that the measured point sources follow the evolutionary pace of star formation more directly than diffuse star formation tracers.« less
THE QUEST FOR DUSTY STAR-FORMING GALAXIES AT HIGH REDSHIFT z ≳ 4
DOE Office of Scientific and Technical Information (OSTI.GOV)
Mancuso, C.; Lapi, A.; Shi, J.
2016-06-01
We exploit the continuity equation approach and “main-sequence” star formation timescales to show that the observed high abundance of galaxies with stellar masses ≳ a few 10{sup 10} M {sub ⊙} at redshift z ≳ 4 implies the existence of a galaxy population featuring large star formation rates (SFRs) ψ ≳ 10{sup 2} M {sub ⊙} yr{sup −1} in heavily dust-obscured conditions. These galaxies constitute the high-redshift counterparts of the dusty star-forming population already surveyed for z ≲ 3 in the far-IR band by the Herschel Space Observatory . We work out specific predictions for the evolution of the correspondingmore » stellar mass and SFR functions out to z ∼ 10, determining that the number density at z ≲ 8 for SFRs ψ ≳ 30 M {sub ⊙} yr{sup −1} cannot be estimated relying on the UV luminosity function alone, even when standard corrections for dust extinction based on the UV slope are applied. We compute the number counts and redshift distributions (including galaxy-scale gravitational lensing) of this galaxy population, and show that current data from the AzTEC - LABOCA , SCUBA-2 , and ALMA - SPT surveys are already addressing it. We demonstrate how an observational strategy based on color preselection in the far-IR or (sub-)millimeter band with Herschel and SCUBA-2 , supplemented by photometric data from on-source observations with ALMA , can allow us to reconstruct the bright end of the SFR functions out to z ≲ 8. In parallel, such a challenging task can be managed by exploiting current UV surveys in combination with (sub-)millimeter observations by ALMA and NIKA2 and/or radio observations by SKA and its precursors.« less
Stellar Populations of Highly Magnified Lensed Galaxies: Young Starbursts at Z approximately 2
NASA Technical Reports Server (NTRS)
Wuyts, Eva; Rigby, Jane R.; Gladders, Michael D.; Gilbank, David G.; Sharon, Keren; Gralla, Megan B.; Bayliss, Matthew B.
2012-01-01
We present a comprehensive analysis of the rest-frame UV to near-IR spectral energy distributions (SEDs) and rest-frame optical spectra of four of the brightest gravitationally lensed galaxies in the literature: RCSGA 032727-132609 at z = 1.70, MS1512-cB58 at z = 2.73, SGAS J152745.1+065219 at z = 2.76, and SGAS J122651.3+215220 at z = 2.92. This includes new Spitzer imaging for RCSGA0327 as well as new spectra, near-IR imaging and Spitzer imaging for SGAS1527 and SGAS1226. Lensing magnifications of 3-4 mag allow a detailed study of the stellar populations and physical conditions. We compare star formation rates (SFRs) as measured from the SED fit, the Ha and [O II] ?3727 emission lines, and the UV+IR bolometric luminosity where 24 micron photometry is available. The SFR estimate from the SED fit is consistently higher than the other indicators, which suggests that the Calzetti dust extinction law used in the SED fitting is too flat for young star-forming galaxies at z 2. Our analysis finds similar stellar population parameters for all four lensed galaxies: stellar masses (3-7) ? 10(exp 9)Solar M young ages approx 100 Myr, little dust content E(B - V) = 0.10-0.25, and SFRs around 20-100 solar M/ yr. Compared to typical values for the galaxy population at z approx. 2, this suggests we are looking at newly formed, starbursting systems that have only recently started the buildup of stellar mass. These results constitute the first detailed, uniform analysis of a sample of the growing number of strongly lensed galaxies known at z approx 2.
THE AROMATIC FEATURES IN VERY FAINT DWARF GALAXIES
DOE Office of Scientific and Technical Information (OSTI.GOV)
Wu Ronin; Hogg, David W.; Moustakas, John
2011-04-01
We present optical and mid-infrared photometry of a statistically complete sample of 29 dwarf galaxies (M{sub r} > - 15 mag) selected from the Sloan Digital Sky Survey (SDSS) spectroscopic sample and observed in the mid-infrared with Spitzer IRAC. This sample contains nearby (redshift {approx}<0.005) galaxies 3 mag fainter than previously studied samples. We compare our sample with other star-forming galaxies that have been observed with both IRAC and SDSS. We examine the relationship of the infrared color, [3.6]-[7.8], sensitive to polycyclic aromatic hydrocarbon (PAH) abundance and also hot dust and stellar continuum, with star formation rates (SFRs), oxygen abundances,more » and radiation hardness, all estimated by optical emission lines. Consistent with studies of more luminous dwarfs, we find that these dwarf galaxies show much redder [3.6]-[7.8] color than luminous galaxies with similar specific SFRs. Unlike luminous galaxies, we find that these dwarf galaxies show no significant dependence at all of the [3.6]-[7.8] color on SFR, oxygen abundance, or radiation hardness, despite the fact that the sample spans a significant range in all of these quantities. When the dwarfs in our sample are compared with more luminous dwarfs, we find that the [3.6]-[7.8] color, potentially tracing the PAH emission, depends on oxygen abundance and radiation hardness. However, these two parameters are correlated with one another as well; we break this degeneracy by looking at the PAH-oxygen abundance relation at a fixed radiation hardness and the PAH-hardness relation at a fixed oxygen abundance. This test shows that the [3.6]-[7.8] color in dwarf galaxies appears to depend more directly on oxygen abundance based on the data currently available.« less
NASA Astrophysics Data System (ADS)
Price, Sedona H.; Kriek, Mariska; Brammer, Gabriel B.; Conroy, Charlie; Förster Schreiber, Natascha M.; Franx, Marijn; Fumagalli, Mattia; Lundgren, Britt; Momcheva, Ivelina; Nelson, Erica J.; Skelton, Rosalind E.; van Dokkum, Pieter G.; Whitaker, Katherine E.; Wuyts, Stijn
2014-06-01
The nature of dust in distant galaxies is not well understood, and until recently few direct dust measurements have been possible. We investigate dust in distant star-forming galaxies using near-infrared grism spectra of the 3D-HST survey combined with archival multi-wavelength photometry. These data allow us to make a direct comparison between dust around star-forming regions (A V, H II ) and the integrated dust content (A V, star). We select a sample of 163 galaxies between 1.36 <= z <= 1.5 with Hα signal-to-noise ratio >=5 and measure Balmer decrements from stacked spectra to calculate A V, H II . First, we stack spectra in bins of A V, star, and find that A V, H II = 1.86 A V, star, with a significance of σ = 1.7. Our result is consistent with the two-component dust model, in which galaxies contain both diffuse and stellar birth cloud dust. Next, we stack spectra in bins of specific star formation rate (log SSFR), star formation rate (log SFR), and stellar mass (log M *). We find that on average A V, H II increases with SFR and mass, but decreases with increasing SSFR. Interestingly, the data hint that the amount of extra attenuation decreases with increasing SSFR. This trend is expected from the two-component model, as the extra attenuation will increase once older stars outside the star-forming regions become more dominant in the galaxy spectrum. Finally, using Balmer decrements we derive dust-corrected Hα SFRs, and find that stellar population modeling produces incorrect SFRs if rapidly declining star formation histories are included in the explored parameter space.
NASA Technical Reports Server (NTRS)
Fumagalli, Mattia; Labbe, Ivo; Patel, Shannon G.; Franx, Marijn; vanDokkum, Pieter; Brammer, Gabriel; DaCunha, Elisabete; FoersterSchreiber, Natascha M.; Kriek, Mariska; Quadri, Ryan;
2013-01-01
We investigate star formation rates of quiescent galaxies at high redshift (0.3 < z < 2.5) using 3D-HST WFC3 grism spectroscopy and Spitzer mid-infrared data. We select quiescent galaxies on the basis of the widely used UVJ color-color criteria. Spectral energy distribution fitting (rest frame optical and near-IR) indicates very low star formation rates for quiescent galaxies (sSFR approx. 10(exp -12)/yr. However, SED fitting can miss star formation if it is hidden behind high dust obscuration and ionizing radiation is re-emitted in the mid-infrared. It is therefore fundamental to measure the dust-obscured SFRs with a mid-IR indicator. We stack the MIPS-24 micron images of quiescent objects in five redshift bins centered on z = 0.5, 0.9, 1.2, 1.7, 2.2 and perform aperture photometry. Including direct 24 micron detections, we find sSFR approx. 10(exp -11.9) × (1 + z)(sup 4)/yr. These values are higher than those indicated by SED fitting, but at each redshift they are 20-40 times lower than those of typical star forming galaxies. The true SFRs of quiescent galaxies might be even lower, as we show that the mid-IR fluxes can be due to processes unrelated to ongoing star formation, such as cirrus dust heated by old stellar populations and circumstellar dust. Our measurements show that star formation quenching is very efficient at every redshift. The measured SFR values are at z > 1.5 marginally consistent with the ones expected from gas recycling (assuming that mass loss from evolved stars refuels star formation) and well above that at lower redshifts.
ESTIMATING THE STAR FORMATION RATE AT 1 kpc SCALES IN NEARBY GALAXIES
DOE Office of Scientific and Technical Information (OSTI.GOV)
Leroy, Adam K.; Munoz-Mateos, Juan-Carlos; Bigiel, Frank
2012-07-15
Using combinations of H{alpha}, ultraviolet (UV), and infrared (IR) emission, we estimate the star formation rate (SFR) surface density, {Sigma}{sub SFR}, at 1 kpc resolution for 30 disk galaxies that are targets of the IRAM HERACLES CO survey. We present a new physically motivated IR spectral-energy-distribution-based approach to account for possible contributions to 24 {mu}m emission not associated with recent star formation. Considering a variety of 'reference' SFRs from the literature, we revisit the calibration of the 24 {mu}m term in hybrid (UV+IR or H{alpha}+IR) tracers. We show that the overall calibration of this term remains uncertain at the factormore » of two level because of the lack of wide-field, robust reference SFR estimates. Within this uncertainty, published calibrations represent a reasonable starting point for 1 kpc-wide areas of star-forming disk galaxies, but we re-derive and refine the calibration of the IR term in these tracers to match our resolution and approach to 24 {mu}m emission. We compare a large suite of {Sigma}{sub SFR} estimates and find that above {Sigma}{sub SFR} {approx} 10{sup -3} M{sub Sun} yr{sup -1} kpc{sup -2} the systematic differences among tracers are less than a factor of two across two orders of magnitude dynamic range. We caution that methodology and data both become serious issues below this level. We note from simple model considerations that when focusing on a part of a galaxy dominated by a single stellar population, the intrinsic uncertainty in H{alpha}- and FUV-based SFRs is {approx}0.3 and {approx}0.5 dex.« less
Gas, Stars, and Star Formation in Alfalfa Dwarf Galaxies
NASA Technical Reports Server (NTRS)
Huang, Shan; Haynes, Martha P.; Giovanelli, Riccardo; Brinchmann, Jarle; Stierwalt, Sabrina; Neff, Susan G.
2012-01-01
We examine the global properties of the stellar and Hi components of 229 low H i mass dwarf galaxies extracted from the ALFALFA survey, including a complete sample of 176 galaxies with H i masses <10(sup 7.7) solar mass and Hi line widths <80 kilometers per second. Sloan Digital Sky Survey (SDSS) data are combined with photometric properties derived from Galaxy Evolution Explorer to derive stellar masses (M*) and star formation rates (SFRs) by fitting their UV-optical spectral energy distributions (SEDs). In optical images, many of the ALFALFA dwarfs are faint and of low surface brightness; only 56% of those within the SDSS footprint have a counterpart in the SDSS spectroscopic survey. A large fraction of the dwarfs have high specific star formation rates (SSFRs), and estimates of their SFRs and M* obtained by SED fitting are systematically smaller than ones derived via standard formulae assuming a constant SFR. The increased dispersion of the SSFR distribution at M* approximately less than10(exp 8)M(sub 0) is driven by a set of dwarf galaxies that have low gas fractions and SSFRs; some of these are dE/dSphs in the Virgo Cluster. The imposition of an upper Hi mass limit yields the selection of a sample with lower gas fractions for their M* than found for the overall ALFALFA population. Many of the ALFALFA dwarfs, particularly the Virgo members, have H i depletion timescales shorter than a Hubble time. An examination of the dwarf galaxies within the full ALFALFA population in the context of global star formation (SF) laws is consistent with the general assumptions that gas-rich galaxies have lower SF efficiencies than do optically selected populations and that Hi disks are more extended than stellar ones.
NASA Astrophysics Data System (ADS)
Violino, Giulio; Ellison, Sara L.; Sargent, Mark; Coppin, Kristen E. K.; Scudder, Jillian M.; Mendel, Trevor J.; Saintonge, Amelie
2018-05-01
We investigate the connection between star formation and molecular gas properties in galaxy mergers at low redshift (z ≤ 0.06). The study we present is based on IRAM 30-m CO(1-0) observations of 11 galaxies with a close companion selected from the Sloan Digital Sky Survey (SDSS). The pairs have mass ratios ≤4, projected separations rp ≤ 30 kpc and velocity separations ΔV ≤ 300 km s-1, and have been selected to exhibit enhanced specific star formation rates (sSFRs). We calculate molecular gas (H2) masses, assigning to each galaxy a physically motivated conversion factor αCO, and we derive molecular gas fractions and depletion times. We compare these quantities with those of isolated galaxies from the extended CO Legacy Data base for the GALEX Arecibo SDSS Survey sample (xCOLDGASS; Saintonge et al.) with gas quantities computed in an identical way. Ours is the first study which directly compares the gas properties of galaxy pairs and those of a control sample of normal galaxies with rigorous control procedures and for which SFR and H2 masses have been estimated using the same method. We find that the galaxy pairs have shorter depletion times and an average molecular gas fraction enhancement of 0.4 dex compared to the mass matched control sample drawn from xCOLDGASS. However, the gas masses (and fractions) in galaxy pairs and their depletion times are consistent with those of non-mergers whose SFRs are similarly elevated. We conclude that both external interactions and internal processes may lead to molecular gas enhancement and decreased depletion times.
NASA Astrophysics Data System (ADS)
Su, Kung-Yi; Hopkins, Philip F.; Hayward, Christopher C.; Faucher-Giguère, Claude-André; Kereš, Dušan; Ma, Xiangcheng; Robles, Victor H.
2017-10-01
Using high-resolution simulations with explicit treatment of stellar feedback physics based on the FIRE (Feedback In Realistic Environments) project, we study how galaxy formation and the interstellar medium (ISM) are affected by magnetic fields, anisotropic Spitzer-Braginskii conduction and viscosity, and sub-grid metal diffusion from unresolved turbulence. We consider controlled simulations of isolated (non-cosmological) galaxies but also a limited set of cosmological 'zoom-in' simulations. Although simulations have shown significant effects from these physics with weak or absent stellar feedback, the effects are much weaker than those of stellar feedback when the latter is modelled explicitly. The additional physics have no systematic effect on galactic star formation rates (SFRs). In contrast, removing stellar feedback leads to SFRs being overpredicted by factors of ˜10-100. Without feedback, neither galactic winds nor volume-filling hot-phase gas exist, and discs tend to runaway collapse to ultra-thin scaleheights with unphysically dense clumps congregating at the galactic centre. With stellar feedback, a multi-phase, turbulent medium with galactic fountains and winds is established. At currently achievable resolutions and for the investigated halo mass range 1010-1013 M⊙, the additional physics investigated here (magnetohydrodynamic, conduction, viscosity, metal diffusion) have only weak (˜10 per cent-level) effects on regulating SFR and altering the balance of phases, outflows or the energy in ISM turbulence, consistent with simple equipartition arguments. We conclude that galactic star formation and the ISM are primarily governed by a combination of turbulence, gravitational instabilities and feedback. We add the caveat that active galactic nucleus feedback is not included in the present work.
DOE Office of Scientific and Technical Information (OSTI.GOV)
Telford, O. Grace; Dalcanton, Julianne J.; Skillman, Evan D.
2016-08-10
There is evidence that the well-established mass–metallicity relation in galaxies is correlated with a third parameter: star formation rate (SFR). The strength of this correlation may be used to disentangle the relative importance of different physical processes (e.g., infall of pristine gas, metal-enriched outflows) in governing chemical evolution. However, all three parameters are susceptible to biases that might affect the observed strength of the relation between them. We analyze possible sources of systematic error, including sample bias, application of signal-to-noise ratio cuts on emission lines, choice of metallicity calibration, uncertainty in stellar mass determination, aperture effects, and dust. We presentmore » the first analysis of the relation between stellar mass, gas phase metallicity, and SFR using strong line abundance diagnostics from Dopita et al. for ∼130,000 star-forming galaxies in the Sloan Digital Sky Survey and provide a detailed comparison of these diagnostics in an appendix. Using these new abundance diagnostics yields a 30%–55% weaker anti-correlation between metallicity and SFR at fixed stellar mass than that reported by Mannucci et al. We find that, for all abundance diagnostics, the anti-correlation with SFR is stronger for the relatively few galaxies whose current SFRs are elevated above their past average SFRs. This is also true for the new abundance diagnostic of Dopita et al., which gives anti-correlation between Z and SFR only in the high specific star formation rate (sSFR) regime, in contrast to the recent results of Kashino et al. The poorly constrained strength of the relation between stellar mass, metallicity, and SFR must be carefully accounted for in theoretical studies of chemical evolution.« less
DOE Office of Scientific and Technical Information (OSTI.GOV)
Weeren, R. J. van; Ogrean, G. A.; Jones, C.
We report on high-resolution JVLA and Chandra observations of the Hubble Space Telescope (HST) Frontier Cluster MACS J0717.5+3745. MACS J0717.5+3745 offers the largest contiguous magnified area of any known cluster, making it a promising target to search for lensed radio and X-ray sources. With the high-resolution 1.0–6.5 GHz JVLA imaging in A and B configuration, we detect a total of 51 compact radio sources within the area covered by the HST imaging. Within this sample, we find seven lensed sources with amplification factors larger than two. None of these sources are identified as multiply lensed. Based on the radio luminosities,more » the majority of these sources are likely star-forming galaxies with star-formation rates (SFRs) of 10–50 M ⊙ yr -1 located at 1≲ z ≲ 2. Two of the lensed radio sources are also detected in the Chandra image of the cluster. These two sources are likely active galactic nuclei, given their 2–10 keV X-ray luminosities of ~ 10 43-44 erg s -1. From the derived radio luminosity function, we find evidence for an increase in the number density of radio sources at 0.6 < z < 2.0, compared to a z < 0.3 sample. Lastly, our observations indicate that deep radio imaging of lensing clusters can be used to study star-forming galaxies, with SFRs as low as ~10M ⊙ yr -1, at the peak of cosmic star formation history.« less
Weeren, R. J. van; Ogrean, G. A.; Jones, C.; ...
2016-01-27
We report on high-resolution JVLA and Chandra observations of the Hubble Space Telescope (HST) Frontier Cluster MACS J0717.5+3745. MACS J0717.5+3745 offers the largest contiguous magnified area of any known cluster, making it a promising target to search for lensed radio and X-ray sources. With the high-resolution 1.0–6.5 GHz JVLA imaging in A and B configuration, we detect a total of 51 compact radio sources within the area covered by the HST imaging. Within this sample, we find seven lensed sources with amplification factors larger than two. None of these sources are identified as multiply lensed. Based on the radio luminosities,more » the majority of these sources are likely star-forming galaxies with star-formation rates (SFRs) of 10–50 M ⊙ yr -1 located at 1≲ z ≲ 2. Two of the lensed radio sources are also detected in the Chandra image of the cluster. These two sources are likely active galactic nuclei, given their 2–10 keV X-ray luminosities of ~ 10 43-44 erg s -1. From the derived radio luminosity function, we find evidence for an increase in the number density of radio sources at 0.6 < z < 2.0, compared to a z < 0.3 sample. Lastly, our observations indicate that deep radio imaging of lensing clusters can be used to study star-forming galaxies, with SFRs as low as ~10M ⊙ yr -1, at the peak of cosmic star formation history.« less
Kim, Jung Kwon; Ha, Seung Beom; Jeon, Chan Hoo; Oh, Jong Jin; Cho, Sung Yong; Oh, Seung-June; Kim, Hyeon Hoe; Jeong, Chang Wook
2016-01-01
Purpose Shock-wave lithotripsy (SWL) is accepted as the first line treatment modality for uncomplicated upper urinary tract stones; however, validated prediction models with regards to stone-free rates (SFRs) are still needed. We aimed to develop nomograms predicting SFRs after the first and within the third session of SWL. Computed tomography (CT) information was also modeled for constructing nomograms. Materials and Methods From March 2006 to December 2013, 3028 patients were treated with SWL for ureter and renal stones at our three tertiary institutions. Four cohorts were constructed: Total-development, Total-validation, CT-development, and CT-validation cohorts. The nomograms were developed using multivariate logistic regression models with selected significant variables in a univariate logistic regression model. A C-index was used to assess the discrimination accuracy of nomograms and calibration plots were used to analyze the consistency of prediction. Results The SFR, after the first and within the third session, was 48.3% and 68.8%, respectively. Significant variables were sex, stone location, stone number, and maximal stone diameter in the Total-development cohort, and mean Hounsfield unit (HU) and grade of hydronephrosis (HN) were additional parameters in the CT-development cohort. The C-indices were 0.712 and 0.723 for after the first and within the third session of SWL in the Total-development cohort, and 0.755 and 0.756, in the CT-development cohort, respectively. The calibration plots showed good correspondences. Conclusions We constructed and validated nomograms to predict SFR after SWL. To the best of our knowledge, these are the first graphical nomograms to be modeled with CT information. These may be useful for patient counseling and treatment decision-making. PMID:26890006
Gravitational lensing reveals extreme dust-obscured star formation in quasar host galaxies
NASA Astrophysics Data System (ADS)
Stacey, H. R.; McKean, J. P.; Robertson, N. C.; Ivison, R. J.; Isaak, K. G.; Schleicher, D. R. G.; van der Werf, P. P.; Baan, W. A.; Berciano Alba, A.; Garrett, M. A.; Loenen, A. F.
2018-06-01
We have observed 104 gravitationally lensed quasars at z ˜ 1-4 with Herschel/SPIRE, the largest such sample ever studied. By targeting gravitational lenses, we probe intrinsic far-infrared (FIR) luminosities and star formation rates (SFRs) more typical of the population than the extremely luminous sources that are otherwise accessible. We detect 72 objects with Herschel/SPIRE and find 66 per cent (69 sources) of the sample have spectral energy distributions (SEDs) characteristic of dust emission. For 53 objects with sufficiently constrained SEDs, we find a median effective dust temperature of 38^{+12}_{-5} K. By applying the radio-infrared correlation, we find no evidence for an FIR excess that is consistent with star-formation-heated dust. We derive a median magnification-corrected FIR luminosity of 3.6^{+4.8}_{-2.4} × 10^{11} L_{⊙} and median SFR of 120^{+160}_{-80} M_{⊙} yr^{-1}} for 94 quasars with redshifts. We find ˜10 per cent of our sample have FIR properties similar to typical dusty star-forming galaxies at z ˜ 2-3 and a range of SFRs <20-10 000 M⊙ yr-1 for our sample as a whole. These results are in line with current models of quasar evolution and suggests a coexistence of dust-obscured star formation and AGN activity is typical of most quasars. We do not find a statistically significant difference in the FIR luminosities of quasars in our sample with a radio excess relative to the radio-infrared correlation. Synchrotron emission is found to dominate at FIR wavelengths for <15 per cent of those sources classified as powerful radio galaxies.
The star formation history of redshift z ~ 2 galaxies: the role of the infrared prior
NASA Astrophysics Data System (ADS)
Fan, Lu-Lu; Lapi, Andrea; Bressan, Alessandro; Nonino, Mario; De Zotti, Gianfranco; Danese, Luigi
2014-01-01
We build a sample of 298 spectroscopically-confirmed galaxies at redshift z ~ 2, selected in the z850-band from the GOODS-MUSIC catalog. By utilizing the rest frame 8 μm luminosity as a proxy of the star formation rate (SFR), we check the accuracy of the standard SED-fitting technique, finding it is not accurate enough to provide reliable estimates of the physical parameters of galaxies. We then develop a new SED-fitting method that includes the IR luminosity as a prior and a generalized Calzetti law with a variable RV. Then we exploit the new method to re-analyze our galaxy sample, and to robustly determine SFRs, stellar masses and ages. We find that there is a general trend of increasing attenuation with the SFR. Moreover, we find that the SFRs range between a few to 103 Msolar yr-1, the masses from 109 to 4 × 1011 Msolar, and the ages from a few tens of Myr to more than 1 Gyr. We discuss how individual age measurements of highly attenuated objects indicate that dust must have formed within a few tens of Myr and already been copious at <=100 Myr. In addition, we find that low luminosity galaxies harbor, on average, significantly older stellar populations and are also less massive than brighter ones; we discuss how these findings and the well known ‘downsizing’ scenario are consistent in a framework where less massive galaxies form first, but their star formation lasts longer. Finally, we find that the near-IR attenuation is not scarce for luminous objects, contrary to what is customarily assumed; we discuss how this affects the interpretation of the observed M*/L ratios.
NASA Astrophysics Data System (ADS)
Howard, Corey S.; Pudritz, Ralph E.; Harris, William E.; Klessen, Ralf S.
2018-04-01
The escape of ultraviolet photons from the densest regions of the interstellar medium (ISM) - giant molecular clouds (GMCs) - is a poorly constrained parameter which is vital to understanding the ionization of the ISM and the intergalactic medium. We characterize the escape fraction, fesc,GMC, from a suite of individual GMC simulations with masses in the range 104-6 M⊙ using the adaptive-mesh refinement code FLASH. We find significantly different fesc,GMC depending on the GMC mass that can reach >90 per cent in the evolution of 5 × 104 and 105 M⊙ clouds or remain low at ˜5 per cent for most of the lifetime of more massive GMCs. All clouds show fluctuations over short, sub-Myr time-scales produced by flickering H II regions. We combine our results to calculate the total escape fraction (fesc,tot) from GMC populations in dwarf starburst and spiral galaxies by randomly drawing clouds from a GMC mass distribution (dN/dM ∝ Mα, where α is either -1.5 or -2.5) over fixed time intervals. We find typical fesc,tot values of 8 per cent for both the dwarf and spiral models. The fluctuations of fesc,tot, however, are much larger for the dwarf models with values as high as 90 per cent. The photons escaping from the 5 × 104 and 105 M⊙ GMCs are the dominant contributors to fesc,tot in all cases. We also show that the accompanying star formation rates (SFRs) of our model (˜2 × 10-2 and 0.73 M⊙yr-1) are consistent with observations of SFRs in dwarf starburst and spiral galaxies, respectively.
New approaches for MOX multi-recycling
DOE Office of Scientific and Technical Information (OSTI.GOV)
Gain, T.; Bouvier, E.; Grosman, R.
Due to its low fissile content after irradiation, Pu from used MOX fuel is considered by some as not recyclable in LWR (Light Water Reactors). The point of this paper is hence to go back to those statements and provide a new analysis based on AREVA extended experience in the fields of fissile and fertile material management and optimized waste management. This is done using the current US fuel inventory as a case study. MOX Multi-recycling in LWRs is a closed cycle scenario where U and Pu management through reprocessing and recycling leads to a significant reduction of the usedmore » assemblies to be stored. The recycling of Pu in MOX fuel is moreover a way to maintain the self-protection of the Pu-bearing assemblies. With this scenario, Pu content is also reduced repetitively via a multi-recycling of MOX in LWRs. Simultaneously, {sup 238}Pu content decreases. All along this scenario, HLW (High-Level Radioactive Waste) vitrified canisters are produced and planned for deep geological disposal. Contrary to used fuel, HLW vitrified canisters do not contain proliferation materials. Moreover, the reprocessing of used fuel limits the space needed on current interim storage. With MOX multi-recycling in LWR, Pu isotopy needs to be managed carefully all along the scenario. The early introduction of a limited number of SFRs (Sodium Fast Reactors) can therefore be a real asset for the overall system. A few SFRs would be enough to improve the Pu isotopy from used LWR MOX fuel and provide a Pu-isotopy that could be mixed back with multi-recycled Pu from LWRs, hence increasing the Pu multi-recycling potential in LWRs.« less
NASA Astrophysics Data System (ADS)
Davies, L. J. M.; Driver, S. P.; Robotham, A. S. G.; Grootes, M. W.; Popescu, C. C.; Tuffs, R. J.; Hopkins, A.; Alpaslan, M.; Andrews, S. K.; Bland-Hawthorn, J.; Bremer, M. N.; Brough, S.; Brown, M. J. I.; Cluver, M. E.; Croom, S.; da Cunha, E.; Dunne, L.; Lara-López, M. A.; Liske, J.; Loveday, J.; Moffett, A. J.; Owers, M.; Phillipps, S.; Sansom, A. E.; Taylor, E. N.; Michalowski, M. J.; Ibar, E.; Smith, M.; Bourne, N.
2016-09-01
We present a meta-analysis of star formation rate (SFR) indicators in the Galaxy And Mass Assembly (GAMA) survey, producing 12 different SFR metrics and determining the SFR-M* relation for each. We compare and contrast published methods to extract the SFR from each indicator, using a well-defined local sample of morphologically selected spiral galaxies, which excludes sources which potentially have large recent changes to their SFR. The different methods are found to yield SFR-M* relations with inconsistent slopes and normalizations, suggesting differences between calibration methods. The recovered SFR-M* relations also have a large range in scatter which, as SFRs of the targets may be considered constant over the different time-scales, suggests differences in the accuracy by which methods correct for attenuation in individual targets. We then recalibrate all SFR indicators to provide new, robust and consistent luminosity-to-SFR calibrations, finding that the most consistent slopes and normalizations of the SFR-M* relations are obtained when recalibrated using the radiation transfer method of Popescu et al. These new calibrations can be used to directly compare SFRs across different observations, epochs and galaxy populations. We then apply our calibrations to the GAMA II equatorial data set and explore the evolution of star formation in the local Universe. We determine the evolution of the normalization to the SFR-M* relation from 0 < z < 0.35 - finding consistent trends with previous estimates at 0.3 < z < 1.2. We then provide the definitive z < 0.35 cosmic star formation history, SFR-M* relation and its evolution over the last 3 billion years.
NASA Astrophysics Data System (ADS)
De Vis, P.; Gomez, H. L.; Schofield, S. P.; Maddox, S.; Dunne, L.; Baes, M.; Cigan, P.; Clark, C. J. R.; Gomez, E. L.; Lara-López, M.; Owers, M.
2017-10-01
We combine samples of nearby galaxies with Herschel photometry selected on their dust, metal, H I and stellar mass content, and compare these to chemical evolution models in order to discriminate between different dust sources. In a companion paper, we used an H I-selected sample of nearby galaxies to reveal a subsample of very gas-rich (gas fraction >80 per cent) sources with dust masses significantly below predictions from simple chemical evolution models, and well below Md/M* and Md/Mgas scaling relations seen in dust and stellar-selected samples of local galaxies. We use a chemical evolution model to explain these dust-poor, but gas-rich, sources as well as the observed star formation rates (SFRs) and dust-to-gas ratios. We find that (I) a delayed star formation history is required to model the observed SFRs; (II) inflows and outflows are required to model the observed metallicities at low gas fractions; (III) a reduced contribution of dust from supernovae (SNe) is needed to explain the dust-poor sources with high gas fractions. These dust-poor, low stellar mass galaxies require a typical core-collapse SN to produce 0.01-0.16 M⊙ of dust. To match the observed dust masses at lower gas fractions, significant grain growth is required to counteract the reduced contribution from dust in SNe and dust destruction from SN shocks. These findings are statistically robust, though due to intrinsic scatter it is not always possible to find one single model that successfully describes all the data. We also show that the dust-to-metal ratio decreases towards lower metallicity.
VLA and ALMA Imaging of Intense Galaxy-wide Star Formation in z ˜ 2 Galaxies
NASA Astrophysics Data System (ADS)
Rujopakarn, W.; Dunlop, J. S.; Rieke, G. H.; Ivison, R. J.; Cibinel, A.; Nyland, K.; Jagannathan, P.; Silverman, J. D.; Alexander, D. M.; Biggs, A. D.; Bhatnagar, S.; Ballantyne, D. R.; Dickinson, M.; Elbaz, D.; Geach, J. E.; Hayward, C. C.; Kirkpatrick, A.; McLure, R. J.; Michałowski, M. J.; Miller, N. A.; Narayanan, D.; Owen, F. N.; Pannella, M.; Papovich, C.; Pope, A.; Rau, U.; Robertson, B. E.; Scott, D.; Swinbank, A. M.; van der Werf, P.; van Kampen, E.; Weiner, B. J.; Windhorst, R. A.
2016-12-01
We present ≃0.″4 resolution extinction-independent distributions of star formation and dust in 11 star-forming galaxies (SFGs) at z = 1.3-3.0. These galaxies are selected from sensitive blank-field surveys of the 2‧ × 2‧ Hubble Ultra-Deep Field at λ = 5 cm and 1.3 mm using the Karl G. Jansky Very Large Array and Atacama Large Millimeter/submillimeter Array. They have star formation rates (SFRs), stellar masses, and dust properties representative of massive main-sequence SFGs at z ˜ 2. Morphological classification performed on spatially resolved stellar mass maps indicates a mixture of disk and morphologically disturbed systems; half of the sample harbor X-ray active galactic nuclei (AGNs), thereby representing a diversity of z ˜ 2 SFGs undergoing vigorous mass assembly. We find that their intense star formation most frequently occurs at the location of stellar-mass concentration and extends over an area comparable to their stellar-mass distribution, with a median diameter of 4.2 ± 1.8 kpc. This provides direct evidence of galaxy-wide star formation in distant blank-field-selected main-sequence SFGs. The typical galactic-average SFR surface density is 2.5 M ⊙ yr-1 kpc-2, sufficiently high to drive outflows. In X-ray-selected AGN where radio emission is enhanced over the level associated with star formation, the radio excess pinpoints the AGNs, which are found to be cospatial with star formation. The median extinction-independent size of main-sequence SFGs is two times larger than those of bright submillimeter galaxies, whose SFRs are 3-8 times larger, providing a constraint on the characteristic SFR (˜300 M ⊙ yr-1) above which a significant population of more compact SFGs appears to emerge.
DOE Office of Scientific and Technical Information (OSTI.GOV)
Hu, Rui
The System Analysis Module (SAM) is an advanced and modern system analysis tool being developed at Argonne National Laboratory under the U.S. DOE Office of Nuclear Energy’s Nuclear Energy Advanced Modeling and Simulation (NEAMS) program. SAM development aims for advances in physical modeling, numerical methods, and software engineering to enhance its user experience and usability for reactor transient analyses. To facilitate the code development, SAM utilizes an object-oriented application framework (MOOSE), and its underlying meshing and finite-element library (libMesh) and linear and non-linear solvers (PETSc), to leverage modern advanced software environments and numerical methods. SAM focuses on modeling advanced reactormore » concepts such as SFRs (sodium fast reactors), LFRs (lead-cooled fast reactors), and FHRs (fluoride-salt-cooled high temperature reactors) or MSRs (molten salt reactors). These advanced concepts are distinguished from light-water reactors in their use of single-phase, low-pressure, high-temperature, and low Prandtl number (sodium and lead) coolants. As a new code development, the initial effort has been focused on modeling and simulation capabilities of heat transfer and single-phase fluid dynamics responses in Sodium-cooled Fast Reactor (SFR) systems. The system-level simulation capabilities of fluid flow and heat transfer in general engineering systems and typical SFRs have been verified and validated. This document provides the theoretical and technical basis of the code to help users understand the underlying physical models (such as governing equations, closure models, and component models), system modeling approaches, numerical discretization and solution methods, and the overall capabilities in SAM. As the code is still under ongoing development, this SAM Theory Manual will be updated periodically to keep it consistent with the state of the development.« less
Molecular Cloud Evolution VI. Measuring cloud ages
NASA Astrophysics Data System (ADS)
Vázquez-Semadeni, Enrique; Zamora-Avilés, Manuel; Galván-Madrid, Roberto; Forbrich, Jan
2018-06-01
In previous contributions, we have presented an analytical model describing the evolution of molecular clouds (MCs) undergoing hierarchical gravitational contraction. The cloud's evolution is characterized by an initial increase in its mass, density, and star formation rate (SFR) and efficiency (SFE) as it contracts, followed by a decrease of these quantities as newly formed massive stars begin to disrupt the cloud. The main parameter of the model is the maximum mass reached by the cloud during its evolution. Thus, specifying the instantaneous mass and some other variable completely determines the cloud's evolutionary stage. We apply the model to interpret the observed scatter in SFEs of the cloud sample compiled by Lada et al. as an evolutionary effect so that, although clouds such as California and Orion A have similar masses, they are in very different evolutionary stages, causing their very different observed SFRs and SFEs. The model predicts that the California cloud will eventually reach a significantly larger total mass than the Orion A cloud. Next, we apply the model to derive estimated ages of the clouds since the time when approximately 25% of their mass had become molecular. We find ages from ˜1.5 to 27 Myr, with the most inactive clouds being the youngest. Further predictions of the model are that clouds with very low SFEs should have massive atomic envelopes constituting the majority of their gravitational mass, and that low-mass clouds (M ˜ 103-104M⊙) end their lives with a mini-burst of star formation, reaching SFRs ˜300-500 M⊙ Myr-1. By this time, they have contracted to become compact (˜1 pc) massive star-forming clumps, in general embedded within larger GMCs.
NASA Astrophysics Data System (ADS)
Scholtz, J.; Alexander, D. M.; Harrison, C. M.; Rosario, D. J.; McAlpine, S.; Mullaney, J. R.; Stanley, F.; Simpson, J.; Theuns, T.; Bower, R. G.; Hickox, R. C.; Santini, P.; Swinbank, A. M.
2018-03-01
We present sensitive 870 μm continuum measurements from our ALMA programmes of 114 X-ray selected active galactic nuclei (AGN) in the Chandra Deep Field-South and Cosmic Evolution Survey fields. We use these observations in combination with data from Spitzer and Herschel to construct a sample of 86 X-ray selected AGN, 63 with ALMA constraints at z = 1.5-3.2 with stellar mass >2 × 1010 M⊙. We constructed broad-band spectral energy distributions in the infrared band (8-1000 μm) and constrain star-formation rates (SFRs) uncontaminated by the AGN. Using a hierarchical Bayesian method that takes into account the information from upper limits, we fit SFR and specific SFR (sSFR) distributions. We explore these distributions as a function of both X-ray luminosity and stellar mass. We compare our measurements to two versions of the Evolution and Assembly of GaLaxies and their Environments (EAGLE) hydrodynamical simulations: the reference model with AGN feedback and the model without AGN. We find good agreement between the observations and that predicted by the EAGLE reference model for the modes and widths of the sSFR distributions as a function of both X-ray luminosity and stellar mass; however, we found that the EAGLE model without AGN feedback predicts a significantly narrower width when compared to the data. Overall, from the combination of the observations with the model predictions, we conclude that (1) even with AGN feedback, we expect no strong relationship between the sSFR distribution parameters and instantaneous AGN luminosity and (2) a signature of AGN feedback is a broad distribution of sSFRs for all galaxies (not just those hosting an AGN) with stellar masses above ≈1010 M⊙.
Understory and small trees contribute importantly to stemflow of a lower montane cloud forest
NASA Astrophysics Data System (ADS)
González Martínez, T. M.; Wiliams-Linera, G.; Holwerda, F.
2016-12-01
Stemflow (Sf) measurements in rainforests and montane forests dominated by large trees rarely include the understory and small trees. In the present study, contributions of woody understory (> 1 m height and < 5 cm DBH), small trees (5 < DBH < 10 cm) and upper canopy trees (> 10 cm DBH) to overall Sf of a lower montane cloud forest in central Veracruz, Mexico, were quantified. Incident precipitation (P), Sf volume and vegetation structure were measured. Subsequently, stemflow funneling ratios (SFR) were calculated, and allometric relationships between tree basal area and Sf volume were used to scale up measurements from individual trees to the stand level. Additionally, two other common methods to calculate areal Sf were used for comparative purposes. Understory woody plants, small trees and upper canopy trees represented 96, 2 and 2 %, respectively, of the total density. Upper canopy trees had the lowest SFRs (1.6 ± 0.5 on average), while the lower understory (> 1 m and < 2 m height) had the highest (36.1 ± 6.4). Small trees and upper understory (> 2 m) presented similar SFRs (22.9 ± 5.4 and 20.2 ± 3.9, respectively). Different scaling methods yielded very similar results for all but the upper understory. Overall areal Sf during the study period was 19 mm (3.8 % of rainfall), to which the understory contributed 66.3 % (12.6 mm), small trees 12.6 % (2.4 mm) and upper canopy trees 21.1 % (4.0 mm). Our results suggest that woody understory vegetation and small trees can have an important role in Sf generation of tall humid tropical forests, provided that the density of plants in these groups is high enough.
MINI-FILAMENT ERUPTION AS THE INITIATION OF A JET ALONG CORONAL LOOPS
DOE Office of Scientific and Technical Information (OSTI.GOV)
Hong, Junchao; Jiang, Yunchun; Yang, Jiayan
Minifilament eruptions (MFEs) and coronal jets are different types of solar small-scale explosive events. We report an MFE observed at the New Vacuum Solar Telescope (NVST). As seen in the NVST H α images, during the rising phase, the minifilament erupts outward orthogonally to its length, accompanied with a flare-like brightening at the bottom. Afterward, dark materials are found to possibly extend along the axis of the expanded filament body. The MFE is analogous to large filament eruptions. However, a simultaneous observation of the Solar Dynamics Observatory shows that a jet is initiated and flows out along nearby coronal loopsmore » during the rising phase of the MFE. Meanwhile, small hot loops, which connect the original eruptive site of the minifilament to the footpoints of the coronal loops, are formed successively. A differential emission measure analysis demonstrates that, on the top of the new small loops, a hot cusp structure exists. We conjecture that the magnetic fields of the MFE interact with magnetic fields of the coronal loops. This interaction is interpreted as magnetic reconnection that produces the jet and the small hot loops.« less
Helmstaedt, Kerstin; Heinrich, Gabriele; Lipscomb, William N.; Braus, Gerhard H.
2002-01-01
The yeast chorismate mutase is regulated by tyrosine as feedback inhibitor and tryptophan as crosspathway activator. The monomer consists of a catalytic and a regulatory domain covalently linked by the loop L220s (212–226), which functions as a molecular hinge. Two monomers form the active dimeric enzyme stabilized by hydrophobic interactions in the vicinity of loop L220s. The role of loop L220s and its environment for enzyme regulation, dimerization, and stability was analyzed. Substitution of yeast loop L220s in place of the homologous loop from the corresponding and similarly regulated Aspergillus enzyme (and the reverse substitution) changed tyrosine inhibition to activation. Yeast loop L220s substituted into the Aspergillus enzyme resulted in a tryptophan-inhibitable enzyme. Monomeric yeast chorismate mutases could be generated by substituting two hydrophobic residues in and near the hinge region. The resulting Thr-212→Asp–Phe-28→Asp enzyme was as stable as wild type, but lost allosteric regulation and showed reduced catalytic activity. These results underline the crucial role of this molecular hinge for inhibition, activation, quaternary structure, and stability of yeast chorismate mutase. PMID:11997452
NASA Technical Reports Server (NTRS)
Lomax, Curtis (Inventor); Webbon, Bruce (Inventor)
1995-01-01
A cooling apparatus includes a container filled with a quantity of coolant fluid initially cooled to a solid phase, a cooling loop disposed between a heat load and the container, a pump for circulating a quantity of the same type of coolant fluid in a liquid phase through the cooling loop, and a pair of couplings for communicating the liquid phase coolant fluid into the container in a direct interface with the solid phase coolant fluid.
Inoue, Takaaki; Muguruma, Kouei; Murota, Takashi; Kinoshita, Hidefumi; Matsuda, Tadashi
2017-01-01
Purpose To evaluate urination-related quality of life (QoL) in patients with an indwelling ureteral stent immediately after ureteroscopic lithotripsy (URSL) for upper urinary calculi. We compared the effects of loop-tail and pigtail ureteral stents on urination-related QoL. Materials and Methods Of 135 patients who underwent URSL between May 2014 and March 2015 at our hospital, we retrospectively analyzed the records of 70 patients (42 men, 28 women; median age, 63 years) in whom the stent tail was positioned inside the bladder without crossing the midline and who completed the core lower urinary tract symptoms score (CLSS) questionnaire pre- and postoperatively. Results There were significant differences in incomplete emptying (p=0.048) and bladder pain (p=0.041) between patients with loop-tail versus pigtail ureteral stents after URSL. In the multivariate analysis, stent type had a stronger association with incomplete emptying (p=0.022) and bladder pain (p=0.018) than age, sex, body mass index, stent side, operation time, diameter of ureteral access sheath, and stent type. Conclusions Patients with loop-tail ureteral stents had better urination-related QoL in the immediate post-URSL stage than patients with pigtail stents. PMID:29124244
Trevitt, Sara; Simpson, Sue; Wood, Annette
2016-05-01
Closed-loop artificial pancreas device (APD) systems are externally worn medical devices that are being developed to enable people with type 1 diabetes to regulate their blood glucose levels in a more automated way. The innovative concept of this emerging technology is that hands-free, continuous, glycemic control can be achieved by using digital communication technology and advanced computer algorithms. A horizon scanning review of this field was conducted using online sources of intelligence to identify systems in development. The systems were classified into subtypes according to their level of automation, the hormonal and glycemic control approaches used, and their research setting. Eighteen closed-loop APD systems were identified. All were being tested in clinical trials prior to potential commercialization. Six were being studied in the home setting, 5 in outpatient settings, and 7 in inpatient settings. It is estimated that 2 systems may become commercially available in the EU by the end of 2016, 1 during 2017, and 2 more in 2018. There are around 18 closed-loop APD systems progressing through early stages of clinical development. Only a few of these are currently in phase 3 trials and in settings that replicate real life. © 2015 Diabetes Technology Society.
Tu, Chao; Tan, Yu-Hong; Shaw, Gary; Zhou, Zheng; Bai, Yawen; Luo, Ray; Ji, Xinhua
2008-01-01
Tumor suppressor p53 is a sequence-specific DNA-binding protein and its central DNA-binding domain (DBD) harbors six hotspots (Arg175, Gly245, Arg248, Arg249, Arg273 and Arg282) for human cancers. Here, the crystal structure of a low-frequency hotspot mutant, p53DBD(R282Q), is reported at 1.54 Å resolution together with the results of molecular-dynamics simulations on the basis of the structure. In addition to eliminating a salt bridge, the R282Q mutation has a significant impact on the properties of two DNA-binding loops (L1 and L3). The L1 loop is flexible in the wild type, but it is not flexible in the mutant. The L3 loop of the wild type is not flexible, whereas it assumes two conformations in the mutant. Molecular-dynamics simulations indicated that both conformations of the L3 loop are accessible under biological conditions. It is predicted that the elimination of the salt bridge and the inversion of the flexibility of L1 and L3 are directly or indirectly responsible for deactivating the tumor suppressor p53. PMID:18453682
NASA Astrophysics Data System (ADS)
Rück, Marlon; Reuther, Johannes
2018-04-01
We implement an extension of the pseudofermion functional renormalization group method for quantum spin systems that takes into account two-loop diagrammatic contributions. An efficient numerical treatment of the additional terms is achieved within a nested graph construction which recombines different one-loop interaction channels. In order to be fully self-consistent with respect to self-energy corrections, we also include certain three-loop terms of Katanin type. We first apply this formalism to the antiferromagnetic J1-J2 Heisenberg model on the square lattice and benchmark our results against the previous one-loop plus Katanin approach. Even though the renormalization group (RG) equations undergo significant modifications when including the two-loop terms, the magnetic phase diagram, comprising Néel ordered and collinear ordered phases separated by a magnetically disordered regime, remains remarkably unchanged. Only the boundary position between the disordered and the collinear phases is found to be moderately affected by two-loop terms. On the other hand, critical RG scales, which we associate with critical temperatures Tc, are reduced by a factor of ˜2 indicating that the two-loop diagrams play a significant role in enforcing the Mermin-Wagner theorem. Improved estimates for critical temperatures are also obtained for the Heisenberg ferromagnet on the three-dimensional simple cubic lattice where errors in Tc are reduced by ˜34 % . These findings have important implications for the quantum phase diagrams calculated within the previous one-loop plus Katanin approach which turn out to be already well converged.
Abdel-Salam, Ghada M H; Abdel-Hamid, Mohamed S; Issa, Mahmoud; Magdy, Ahmed; El-Kotoury, Ahmed; Amr, Khalda
2012-06-01
Mutations in the RNU4ATAC gene cause microcephalic osteodysplastic primordial dwarfism type I. It encodes U4atac, a small nuclear RNA that is a component of the minor spliceosome. Six distinct mutations in 30 patients diagnosed as microcephalic osteodysplastic primordial dwarfism type I have been described. We report on three additional patients from two unrelated families presenting with a milder phenotype of microcephalic osteodysplastic primordial dwarfism type I and metopic synostosis. Patient 1 had two novel heterozygous mutations in the 3' prime stem-loop, g.66G > C and g.124G > A while Patients 2 and 3 had a homozygous mutation g.55G > A in the 5' prime stem-loop. Although they manifested the known spectrum of clinical features of microcephalic osteodysplastic primordial dwarfism type I, they lacked evidence of severe developmental delay and neurological symptoms. These findings expand the mutational and phenotypic spectrum of this syndrome. Copyright © 2012 Wiley Periodicals, Inc.
Jayawardene, Dilshani C; McAuley, Sybil A; Horsburgh, Jodie C; Gerche, André La; Jenkins, Alicia J; Ward, Glenn M; MacIsaac, Richard J; Roberts, Timothy J; Grosman, Benyamin; Kurtz, Natalie; Roy, Anirban; O'Neal, David N
2017-06-01
We aimed to compare closed-loop glucose control for people with type 1 diabetes undertaking high-intensity interval exercise (HIIE) versus moderate-intensity exercise (MIE). Adults with type 1 diabetes established on insulin pumps undertook HIIE and MIE stages in random order during automated insulin delivery via a closed-loop system (Medtronic). Frequent venous sampling for glucose, lactate, ketones, insulin, catecholamines, cortisol, growth hormone, and glucagon levels was performed. The primary outcome was plasma glucose <4.0 mmol/L for ≥15 min, from exercise commencement to 120 min postexercise. Secondary outcomes included continuous glucose monitoring and biochemical parameters. Twelve adults (age mean ± standard deviation 40 ± 13 years) were recruited; all completed the study. Plasma glucose of one participant fell to 3.4 mmol/L following MIE completion; no glucose levels were <4.0 mmol/L for HIIE (primary outcome). There were no glucose excursions >15.0 mmol/L for either stage. Mean (±standard error) plasma glucose did not differ between stages pre-exercise; was higher during exercise in HIIE than MIE (11.3 ± 0.5 mmol/L vs. 9.7 ± 0.6 mmol/L, respectively; P < 0.001); and remained higher until 60 min postexercise. There were no differences in circulating free insulin before, during, or postexercise. During HIIE compared with MIE, there were greater increases in lactate (P < 0.001), catecholamines (all P < 0.05), and cortisol (P < 0.001). Ketones increased more with HIIE than MIE postexercise (P = 0.031). Preliminary findings suggest that closed-loop glucose control is safe for people undertaking HIIE and MIE. However, the management of the postexercise rise in ketones secondary to counter-regulatory hormone-induced insulin resistance observed with HIIE may represent a challenge for closed-loop systems.
Closed-Loop Control of a Neuroprosthetic Hand by Magnetoencephalographic Signals.
Fukuma, Ryohei; Yanagisawa, Takufumi; Yorifuji, Shiro; Kato, Ryu; Yokoi, Hiroshi; Hirata, Masayuki; Saitoh, Youichi; Kishima, Haruhiko; Kamitani, Yukiyasu; Yoshimine, Toshiki
2015-01-01
A neuroprosthesis using a brain-machine interface (BMI) is a promising therapeutic option for severely paralyzed patients, but the ability to control it may vary among individual patients and needs to be evaluated before any invasive procedure is undertaken. We have developed a neuroprosthetic hand that can be controlled by magnetoencephalographic (MEG) signals to noninvasively evaluate subjects' ability to control a neuroprosthesis. Six nonparalyzed subjects performed grasping or opening movements of their right hand while the slow components of the MEG signals (SMFs) were recorded in an open-loop condition. The SMFs were used to train two decoders to infer the timing and types of movement by support vector machine and Gaussian process regression. The SMFs were also used to calculate estimated slow cortical potentials (eSCPs) to identify the origin of motor information. Finally, using the trained decoders, the subjects controlled a neuroprosthetic hand in a closed-loop condition. The SMFs in the open-loop condition revealed movement-related cortical field characteristics and successfully inferred the movement type with an accuracy of 75.0 ± 12.9% (mean ± SD). In particular, the eSCPs in the sensorimotor cortex contralateral to the moved hand varied significantly enough among the movement types to be decoded with an accuracy of 76.5 ± 10.6%, which was significantly higher than the accuracy associated with eSCPs in the ipsilateral sensorimotor cortex (58.1 ± 13.7%; p = 0.0072, paired two-tailed Student's t-test). Moreover, another decoder using SMFs successfully inferred when the accuracy was the greatest. Combining these two decoders allowed the neuroprosthetic hand to be controlled in a closed-loop condition. Use of real-time MEG signals was shown to successfully control the neuroprosthetic hand. The developed system may be useful for evaluating movement-related slow cortical potentials of severely paralyzed patients to predict the efficacy of invasive BMI.
Closed-Loop Control of a Neuroprosthetic Hand by Magnetoencephalographic Signals
Fukuma, Ryohei; Yanagisawa, Takufumi; Yorifuji, Shiro; Kato, Ryu; Yokoi, Hiroshi; Hirata, Masayuki; Saitoh, Youichi; Kishima, Haruhiko; Kamitani, Yukiyasu; Yoshimine, Toshiki
2015-01-01
Objective A neuroprosthesis using a brain–machine interface (BMI) is a promising therapeutic option for severely paralyzed patients, but the ability to control it may vary among individual patients and needs to be evaluated before any invasive procedure is undertaken. We have developed a neuroprosthetic hand that can be controlled by magnetoencephalographic (MEG) signals to noninvasively evaluate subjects’ ability to control a neuroprosthesis. Method Six nonparalyzed subjects performed grasping or opening movements of their right hand while the slow components of the MEG signals (SMFs) were recorded in an open-loop condition. The SMFs were used to train two decoders to infer the timing and types of movement by support vector machine and Gaussian process regression. The SMFs were also used to calculate estimated slow cortical potentials (eSCPs) to identify the origin of motor information. Finally, using the trained decoders, the subjects controlled a neuroprosthetic hand in a closed-loop condition. Results The SMFs in the open-loop condition revealed movement-related cortical field characteristics and successfully inferred the movement type with an accuracy of 75.0 ± 12.9% (mean ± SD). In particular, the eSCPs in the sensorimotor cortex contralateral to the moved hand varied significantly enough among the movement types to be decoded with an accuracy of 76.5 ± 10.6%, which was significantly higher than the accuracy associated with eSCPs in the ipsilateral sensorimotor cortex (58.1 ± 13.7%; p = 0.0072, paired two-tailed Student’s t-test). Moreover, another decoder using SMFs successfully inferred when the accuracy was the greatest. Combining these two decoders allowed the neuroprosthetic hand to be controlled in a closed-loop condition. Conclusions Use of real-time MEG signals was shown to successfully control the neuroprosthetic hand. The developed system may be useful for evaluating movement-related slow cortical potentials of severely paralyzed patients to predict the efficacy of invasive BMI. PMID:26134845
Dislocation loop evolution during in-situ ion irradiation of model FeCrAl alloys
DOE Office of Scientific and Technical Information (OSTI.GOV)
Haley, Jack C.; Briggs, Samuel A.; Edmondson, Philip D.
Model FeCrAl alloys of Fe-10%Cr-5%Al, Fe-12%Cr-4.5%Al, Fe-15%Cr-4%Al, and Fe-18%Cr-3%Al (in wt %) were irradiated with 1 MeV Kr++ ions in-situ with transmission electron microscopy to a dose of 2.5 displacements per atom (dpa) at 320 °C. In all cases, the microstructural damage consisted of dislocation loops with ½< 111 > and <100 > Burgers vectors. The proportion of ½< 111 > dislocation loops varied from ~50% in the Fe-10%Cr-5%Al model alloy and the Fe-18Cr%-3%Al model alloy to a peak of ~80% in the model Fe-15%Cr-4.5%Al alloy. The dislocation loop volume density increased with dose for all alloys and showed signsmore » of approaching an upper limit. The total loop populations at 2.5 dpa had a slight (and possibly insignificant) decline as the chromium content was increased from 10 to 15 wt %, but the Fe-18%Cr-3%Al alloy had a dislocation loop population ~50% smaller than the other model alloys. As a result, the largest dislocation loops in each alloy had image sizes of close to 20 nm in the micrographs, and the median diameters for all alloys ranged from 6 to 8 nm. Nature analysis by the inside-outside method indicated most dislocation loops were interstitial type.« less
Dislocation loop evolution during in-situ ion irradiation of model FeCrAl alloys
Haley, Jack C.; Briggs, Samuel A.; Edmondson, Philip D.; ...
2017-07-06
Model FeCrAl alloys of Fe-10%Cr-5%Al, Fe-12%Cr-4.5%Al, Fe-15%Cr-4%Al, and Fe-18%Cr-3%Al (in wt %) were irradiated with 1 MeV Kr++ ions in-situ with transmission electron microscopy to a dose of 2.5 displacements per atom (dpa) at 320 °C. In all cases, the microstructural damage consisted of dislocation loops with ½< 111 > and <100 > Burgers vectors. The proportion of ½< 111 > dislocation loops varied from ~50% in the Fe-10%Cr-5%Al model alloy and the Fe-18Cr%-3%Al model alloy to a peak of ~80% in the model Fe-15%Cr-4.5%Al alloy. The dislocation loop volume density increased with dose for all alloys and showed signsmore » of approaching an upper limit. The total loop populations at 2.5 dpa had a slight (and possibly insignificant) decline as the chromium content was increased from 10 to 15 wt %, but the Fe-18%Cr-3%Al alloy had a dislocation loop population ~50% smaller than the other model alloys. As a result, the largest dislocation loops in each alloy had image sizes of close to 20 nm in the micrographs, and the median diameters for all alloys ranged from 6 to 8 nm. Nature analysis by the inside-outside method indicated most dislocation loops were interstitial type.« less
A digital optical phase-locked loop for diode lasers based on field programmable gate array.
Xu, Zhouxiang; Zhang, Xian; Huang, Kaikai; Lu, Xuanhui
2012-09-01
We have designed and implemented a highly digital optical phase-locked loop (OPLL) for diode lasers in atom interferometry. The three parts of controlling circuit in this OPLL, including phase and frequency detector (PFD), loop filter and proportional integral derivative (PID) controller, are implemented in a single field programmable gate array chip. A structure type compatible with the model MAX9382∕MCH12140 is chosen for PFD and pipeline and parallelism technology have been adapted in PID controller. Especially, high speed clock and twisted ring counter have been integrated in the most crucial part, the loop filter. This OPLL has the narrow beat note line width below 1 Hz, residual mean-square phase error of 0.14 rad(2) and transition time of 100 μs under 10 MHz frequency step. A main innovation of this design is the completely digitalization of the whole controlling circuit in OPLL for diode lasers.
Optical phase locked loop for transparent inter-satellite communications.
Herzog, F; Kudielka, K; Erni, D; Bächtold, W
2005-05-16
A novel type of optical phase locked loop (OPLL), optimized for homodyne inter-satellite communication, is presented. The loop employs a conventional 180? 3 dB optical hybrid and an AC-coupled balanced front end. No residual carrier transmission is required for phase locking. The loop accepts analog as well as digital data and various modulation formats. The only requirement to the transmitted user signal is a constant envelope. Phase error extraction occurs through applying a small sinusoidal local oscillator (LO) phase disturbance, while measuring its impact on the power of the baseband output signal. First experimental results indicate a receiver sensitivity of 36 photons/bit (-55.7 dBm) for a BER of 10 ;-9, when transmitting a PRBS-31 signal at a data rate of 400 Mbit/s. The system setup employs diode-pumped Nd:YAG lasers at a wavelength of 1.06 mum.
A digital optical phase-locked loop for diode lasers based on field programmable gate array
NASA Astrophysics Data System (ADS)
Xu, Zhouxiang; Zhang, Xian; Huang, Kaikai; Lu, Xuanhui
2012-09-01
We have designed and implemented a highly digital optical phase-locked loop (OPLL) for diode lasers in atom interferometry. The three parts of controlling circuit in this OPLL, including phase and frequency detector (PFD), loop filter and proportional integral derivative (PID) controller, are implemented in a single field programmable gate array chip. A structure type compatible with the model MAX9382/MCH12140 is chosen for PFD and pipeline and parallelism technology have been adapted in PID controller. Especially, high speed clock and twisted ring counter have been integrated in the most crucial part, the loop filter. This OPLL has the narrow beat note line width below 1 Hz, residual mean-square phase error of 0.14 rad2 and transition time of 100 μs under 10 MHz frequency step. A main innovation of this design is the completely digitalization of the whole controlling circuit in OPLL for diode lasers.
Optical phase locked loop for transparent inter-satellite communications
NASA Astrophysics Data System (ADS)
Herzog, F.; Kudielka, K.; Erni, D.; Bächtold, W.
2005-05-01
A novel type of optical phase locked loop (OPLL), optimized for homodyne inter-satellite communication, is presented. The loop employs a conventional 180◦ 3 dB optical hybrid and an AC-coupled balanced front end. No residual carrier transmission is required for phase locking. The loop accepts analog as well as digital data and various modulation formats. The only requirement to the transmitted user signal is a constant envelope. Phase error extraction occurs through applying a small sinusoidal local oscillator (LO) phase disturbance, while measuring its impact on the power of the baseband output signal. First experimental results indicate a receiver sensitivity of 36 photons/bit (-55.7 dBm) for a BER of 10 ^-9, when transmitting a PRBS-31 signal at a data rate of 400 Mbit/s. The system setup employs diode-pumped Nd:YAG lasers at a wavelength of 1.06 μm.
One-loop Pfaffians and large-field inflation in string theory
NASA Astrophysics Data System (ADS)
Ruehle, Fabian; Wieck, Clemens
2017-06-01
We study the consistency of large-field inflation in low-energy effective field theories of string theory. In particular, we focus on the stability of Kähler moduli in the particularly interesting case where the non-perturbative superpotential of the Kähler sector explicitly depends on the inflaton field. This situation arises generically due to one-loop corrections to the instanton action. The field dependence of the modulus potential feeds back into the inflationary dynamics, potentially impairing slow roll. We distinguish between world-sheet instantons from Euclidean D-branes, which typically yield polynomial one-loop Pfaffians, and gaugino condensates, which can yield exponential or periodic corrections. In all scenarios successful slow-roll inflation imposes bounds on the magnitude of the one-loop correction, corresponding to constraints on possible compactifications. While we put a certain emphasis on Type IIB constructions with mobile D7-branes, our results seem to apply more generally.
Analysis of flexible aircraft longitudinal dynamics and handling qualities. Volume 2: Data
NASA Technical Reports Server (NTRS)
Waszak, M. R.; Schmidt, D. K.
1985-01-01
Two analysis methods are applied to a family of flexible aircraft in order to investigate how and when structural (especially dynamic aeroelastic) effects affect the dynamic characteristics of aircraft. The first type of analysis is an open loop modal analysis technique. This method considers the effect of modal residue magnitudes on determining vehicle handling qualities. The second method is a pilot in the loop analysis procedure that considers several closed loop system characteristics. Both analyses indicated that dynamic aeroelastic effects caused a degradation in vehicle tracking performance, based on the evaluation of some simulation results. Volume 2 consists of the presentation of the state variable models of the flexible aircraft configurations used in the analysis applications mode shape plots for the structural modes, numerical results from the modal analysis frequency response plots from the pilot in the loop analysis and a listing of the modal analysis computer program.
NASA Astrophysics Data System (ADS)
Chen, Xuefeng; Liu, Zhen; Xu, Chenhong; Cao, Fei; Wang, Genshui; Dong, Xianlin
2016-05-01
The dielectric and energy-storage properties of Pb0.99Nb0.02[(Zr0.60Sn0.40)0.95Ti0.05]0.98O3 (PNZST) bulk ceramics near the antiferroelectric (AFE)-ferroelectric (FE) phase boundary are investigated as a function of temperature. Three characteristic temperatures T0, TC, T2 are obtained from the dielectric temperature spectrum. At different temperature regions (below T0, between T0 and TC, and above TC), three types of hysteresis loops are observed as square double loop, slim loop and linear loop, respectively. The switching fields and recoverable energy density all first increase and then decrease with increasing temperature, and reach their peak values at ˜T0. These results provide a convenient method to optimize the working temperature of antiferroelectric electronic devices through testing the temperature dependent dielectric properties of antiferroelectric ceramics.
Costas loop lock detection in the advanced receiver
NASA Technical Reports Server (NTRS)
Mileant, A.; Hinedi, S.
1989-01-01
The advanced receiver currently being developed uses a Costas digital loop to demodulate the subcarrier. Previous analyses of lock detector algorithms for Costas loops have ignored the effects of the inherent correlation between the samples of the phase-error process. Accounting for this correlation is necessary to achieve the desired lock-detection probability for a given false-alarm rate. Both analysis and simulations are used to quantify the effects of phase correlation on lock detection for the square-law and the absolute-value type detectors. Results are obtained which depict the lock-detection probability as a function of loop signal-to-noise ratio for a given false-alarm rate. The mathematical model and computer simulation show that the square-law detector experiences less degradation due to phase jitter than the absolute-value detector and that the degradation in detector signal-to-noise ratio is more pronounced for square-wave than for sine-wave signals.
Hot spine loops and the nature of a late-phase solar flare
DOE Office of Scientific and Technical Information (OSTI.GOV)
Sun, Xudong; Todd Hoeksema, J.; Liu, Yang
2013-12-01
The fan-spine magnetic topology is believed to be responsible for many curious features in solar explosive events. A spine field line links distinct flux domains, but direct observation of such a feature has been rare. Here we report a unique event observed by the Solar Dynamic Observatory where a set of hot coronal loops (over 10 MK) connected to a quasi-circular chromospheric ribbon at one end and a remote brightening at the other. Magnetic field extrapolation suggests that these loops are partly tracers of the evolving spine field line. Continuous slipping- and null-point-type reconnections were likely at work, energizing themore » loop plasma and transferring magnetic flux within and across the fan quasi-separatrix layer. We argue that the initial reconnection is of the 'breakout' type, which then transitioned to a more violent flare reconnection with an eruption from the fan dome. Significant magnetic field changes are expected and indeed ensued. This event also features an extreme-ultraviolet (EUV) late phase, i.e., a delayed secondary emission peak in warm EUV lines (about 2-7 MK). We show that this peak comes from the cooling of large post-reconnection loops beside and above the compact fan, a direct product of eruption in such topological settings. The long cooling time of the large arcades contributes to the long delay; additional heating may also be required. Our result demonstrates the critical nature of cross-scale magnetic coupling—topological change in a sub-system may lead to explosions on a much larger scale.« less
McDowell, S. Elizabeth; Jun, Jesse M.; Walter, Nils G.
2010-01-01
Enzymes generally are thought to derive their functional activity from conformational motions. The limited chemical variation in RNA suggests that such structural dynamics may play a particularly important role in RNA function. Minimal hammerhead ribozymes are known to cleave efficiently only in ∼10-fold higher than physiologic concentrations of Mg2+ ions. Extended versions containing native loop–loop interactions, however, show greatly enhanced catalytic activity at physiologically relevant Mg2+ concentrations, for reasons that are still ill-understood. Here, we use Mg2+ titrations, activity assays, ensemble, and single molecule fluorescence resonance energy transfer (FRET) approaches, combined with molecular dynamics (MD) simulations, to ask what influence the spatially distant tertiary loop–loop interactions of an extended hammerhead ribozyme have on its structural dynamics. By comparing hammerhead variants with wild-type, partially disrupted, and fully disrupted loop–loop interaction sequences we find that the tertiary interactions lead to a dynamic motional sampling that increasingly populates catalytically active conformations. At the global level the wild-type tertiary interactions lead to more frequent, if transient, encounters of the loop-carrying stems, whereas at the local level they lead to an enrichment in favorable in-line attack angles at the cleavage site. These results invoke a linkage between RNA structural dynamics and function and suggest that loop–loop interactions in extended hammerhead ribozymes—and Mg2+ ions that bind to minimal ribozymes—may generally allow more frequent access to a catalytically relevant conformation(s), rather than simply locking the ribozyme into a single active state. PMID:20921269
Loop versus divided colostomy for the management of anorectal malformations.
Oda, Omar; Davies, Dafydd; Colapinto, Kimberly; Gerstle, J Ted
2014-01-01
The purpose of this study was to compare the clinical outcomes of loop and divided colostomies in patients with anorectal malformations (ARM). We performed a retrospective cohort study reviewing the medical records of all patients with ARM managed with diverting colostomies between 2000 and 2010 at our institution. Independent variables and outcomes of stoma complications were analyzed by parametric measures and logistic regression. One hundred forty-four patients managed with a colostomy for ARM were evaluated (37.5% females, 50.7% loop, 49.3% divided). The incidence of patients with loop and divided colostomies who developed stoma-related complications was 31.5 and 15.5%, respectively (p=0.031). The incidence of prolapse was 17.8 and 2.8%, respectively (p=0.005). Multivariable-logistic regression controlling for other significant independent variables found loop colostomies to be positively associated with the development of a stoma complication (OR 3.13, 95%CI (1.09, 8.96), p=0.033). When individual complications were evaluated, it was only stoma prolapse that was more likely in patients with loop colostomies (OR 8.75, 95%CI (1.74, 44.16), p=0.009). Because of the higher incidence of prolapse, loop colostomies were found to be associated with a higher total incidence of complications than divided stomas. The development of other complications, including urinary tract infections (UTIs) and megarectum, were independent of the type of colostomy performed. © 2014.
Alonso, A; Cujec, T P; Peterlin, B M
1994-01-01
Rates of transcriptions of the human immunodeficiency virus are greatly increased by the viral trans activator Tat. In vitro, Tat binds to the 5' bulge of the trans-activation response (TAR) RNA stem-loop, which is present in all viral transcripts. In human cells, the central loop in TAR and its cellular RNA-binding proteins are also critical for the function of Tat. Previously, we demonstrated that in rodent cells (CHO cells), but not in those which contain the human chromosome 12 (CHO12 cells), Tat-TAR interactions are compromised. In this study, we examined the roles of the bulge and loop in TAR in Tat trans activation in these cells. Whereas low levels of trans activation depended solely on interactions between Tat and the bulge in CHO cells, high levels of trans activation depended also on interactions between Tat and the loop in CHO12 cells. Since the TAR loop binding proteins in these two cell lines were identical and different from their human counterpart, the human chromosome 12 does not encode TAR loop binding proteins. In vivo binding competition studies with TAR decoys confirmed that the binding of Tat to TAR is more efficient in CHO12 cells. Thus, the protein(s) encoded on human chromosome 12 helps to tether Tat to TAR via its loop, which results in high levels of trans activation. Images PMID:8083988
DOE Office of Scientific and Technical Information (OSTI.GOV)
El-Atwani, O.; Esquivel, E.; Efe, M.
Displacement damage, through heavy ion irradiation was studied on two tungsten grades (coarse grained tungsten (CGW) and nanocrystalline and ultrafine grained tungsten (NCW)) using different displacement per atom rates and different irradiation temperatures (RT and 1050 K). Percentage of <111> and <100> type loops at the irradiation conditions was determined. Irradiation damage in the microstructure was quantified using average loop areas and densities (method A) and loop areal fraction in the grain matrices under 2-beam diffraction conditions (method B). Average values of <111> and <100> loops were calculated from method A. Loop coalescence was shown to occur for CGW atmore » 0.25 dpa. Using both methods of quantifying microstructural damage, no effect of dpa rate was observed and damage in CGW was shown to be the same at RT and 1050 K. Swelling from voids observed at 1050 K was quantified. The loop damage in NCW was compared to CGW at the same diffraction and imaging conditions. NCW was shown to possess enhanced irradiation resistance at RT regarding loop damage and higher swelling resistance at 1050 K compared to CGW. For irradiation at 1050 K, the NCW was shown to have a similar defect densities to the CGW which is attributed to higher surface effects in the CGW, vacancy loop growth to voids and a better sink efficiency in the CGW deduced from the vacancy distribution profiles from Kinetic Monte Carlo simulations. Loop density and swelling was shown to have similar values in grains sizes that range from 80-600 nm. No loop or void denuded zones occurred at any of the irradiation conditions. This work has a collection of experiments and conclusions that are of vital importance to materials and nuclear communities.« less
El-Atwani, O.; Esquivel, E.; Efe, M.; ...
2018-02-20
Displacement damage, through heavy ion irradiation was studied on two tungsten grades (coarse grained tungsten (CGW) and nanocrystalline and ultrafine grained tungsten (NCW)) using different displacement per atom rates and different irradiation temperatures (RT and 1050 K). Percentage of <111> and <100> type loops at the irradiation conditions was determined. Irradiation damage in the microstructure was quantified using average loop areas and densities (method A) and loop areal fraction in the grain matrices under 2-beam diffraction conditions (method B). Average values of <111> and <100> loops were calculated from method A. Loop coalescence was shown to occur for CGW atmore » 0.25 dpa. Using both methods of quantifying microstructural damage, no effect of dpa rate was observed and damage in CGW was shown to be the same at RT and 1050 K. Swelling from voids observed at 1050 K was quantified. The loop damage in NCW was compared to CGW at the same diffraction and imaging conditions. NCW was shown to possess enhanced irradiation resistance at RT regarding loop damage and higher swelling resistance at 1050 K compared to CGW. For irradiation at 1050 K, the NCW was shown to have a similar defect densities to the CGW which is attributed to higher surface effects in the CGW, vacancy loop growth to voids and a better sink efficiency in the CGW deduced from the vacancy distribution profiles from Kinetic Monte Carlo simulations. Loop density and swelling was shown to have similar values in grains sizes that range from 80-600 nm. No loop or void denuded zones occurred at any of the irradiation conditions. This work has a collection of experiments and conclusions that are of vital importance to materials and nuclear communities.« less
Stabilisation of time-varying linear systems via Lyapunov differential equations
NASA Astrophysics Data System (ADS)
Zhou, Bin; Cai, Guang-Bin; Duan, Guang-Ren
2013-02-01
This article studies stabilisation problem for time-varying linear systems via state feedback. Two types of controllers are designed by utilising solutions to Lyapunov differential equations. The first type of feedback controllers involves the unique positive-definite solution to a parametric Lyapunov differential equation, which can be solved when either the state transition matrix of the open-loop system is exactly known, or the future information of the system matrices are accessible in advance. Different from the first class of controllers which may be difficult to implement in practice, the second type of controllers can be easily implemented by solving a state-dependent Lyapunov differential equation with a given positive-definite initial condition. In both cases, explicit conditions are obtained to guarantee the exponentially asymptotic stability of the associated closed-loop systems. Numerical examples show the effectiveness of the proposed approaches.
Complete spectrum of long operators in Script N = 4 SYM at one loop
NASA Astrophysics Data System (ADS)
Beisert, Niklas; Kazakov, Vladimir A.; Sakai, Kazuhiro; Zarembo, Konstantin
2005-07-01
We construct the complete spectral curve for an arbitrary local operator, including fermions and covariant derivatives, of one-loop Script N = 4 gauge theory in the thermodynamic limit. This curve perfectly reproduces the Frolov-Tseytlin limit of the full spectral curve of classical strings on AdS5 × S5 derived in [64]. To complete the comparison we introduce stacks, novel bound states of roots of different flavors which arise in the thermodynamic limit of the corresponding Bethe ansatz equations. We furthermore show the equivalence of various types of Bethe equations for the underlying fraktur sfraktur u(2,2|4) superalgebra, in particular of the type ``Beauty'' and ``Beast''.
NASA Astrophysics Data System (ADS)
Ou, Zhijing; Lin, Jianmao; Chen, Shengfu; Lin, Wen
2017-10-01
A total of 7 experimental tests were conducted to investigate seismic performance of four element variable cross-sectional Concrete Filled Steel Tubular (CFST) laced columns. The experimental parameters are longitudinal slope and arrangement type of lacing tubes. The rules on hysteresis loop, ductility, energy expenditure, and stiffness degradation of specimens are researched. Test results indicate that all specimens have good seismic performance; their hysteresis loops are full without obvious shrinkage. With the increase of longitudinal slope, the horizontal carrying capacity increases, energy dissipation capacity improve, and there is slightly increase in stiffness degradation. The influence of arrangement type of lacing tubes on displacement ductility of specimens is big.
Topological Interaction by Entangled DNA Loops
NASA Astrophysics Data System (ADS)
Feng, Lang; Sha, Ruojie; Seeman, Nadrian. C.; Chaikin, Paul. M.
2012-11-01
We have discovered a new type of interaction between micro- or nanoscale particles that results from the entanglement of strands attached to their surfaces. Self-complementary DNA single strands on a particle can hybridize to form loops. A similar proximal particle can have its loops catenate with those of the first. Unlike conventional thermodynamic interparticle interactions, the catenation interaction is strongly history and protocol dependent, allowing for nonequilibrium particle assembly. The interactions can be controlled by an interesting combination of forces, temperature, light sensitive cross-linking and enzymatic unwinding of the topological links. This novel topological interaction may lead to new materials and phenomena such as particles strung on necklaces, confined motions on designed contours and surfaces, and colloidal Olympic gels.
Zago, Anna; Connolly, Sarah A; Spear, Patricia G; Longnecker, Richard
2013-01-01
Among the herpesvirus glycoprotein B (gB) fusion proteins, the hydrophobic content of fusion loops and membrane proximal regions (MPRs) are inversely correlated with each other. We examined the functional importance of the hydrophobicity of these regions by replacing them in herpes simplex virus type 1 gB with corresponding regions from Epstein-Barr virus gB. We show that fusion activity is dependent on the structural context in which the specific loops and MPR sequences exist, rather than a simple hydrophobic relationship. Copyright © 2012 Elsevier B.V. All rights reserved.
Opto-Electronic Oscillator Stabilized By A Hyperfine Atomic Transition
NASA Technical Reports Server (NTRS)
Strekalov, Dmitry; Aveline, David; Matsko, Andrey B.; Thompson, Robert; Yu, Nan
2004-01-01
Opto-electronic oscillator (OEO) is a closed-loop system with part of the loop is implemented by an optical beam, and the rest by RF circuitry. The technological advantage of this approach over traditional all-RF loops in the gigahertz range comes from the that frequency filtering can be done far more efficiently in the optical range with compact, low power, and have superior stability. In this work, we report our preliminary results on using the phenomenon of coherent population trapping in (87) Rb vapor as an optical filter. Such a filter allows us to stabilize the OEO at the hyperfine splitting frequency of rubidium, thus implementing a novel type of frequency standard.
Fault Detection and Safety in Closed-Loop Artificial Pancreas Systems
2014-01-01
Continuous subcutaneous insulin infusion pumps and continuous glucose monitors enable individuals with type 1 diabetes to achieve tighter blood glucose control and are critical components in a closed-loop artificial pancreas. Insulin infusion sets can fail and continuous glucose monitor sensor signals can suffer from a variety of anomalies, including signal dropout and pressure-induced sensor attenuations. In addition to hardware-based failures, software and human-induced errors can cause safety-related problems. Techniques for fault detection, safety analyses, and remote monitoring techniques that have been applied in other industries and applications, such as chemical process plants and commercial aircraft, are discussed and placed in the context of a closed-loop artificial pancreas. PMID:25049365
Defining the Nature of Thermal Intermediate in 3 State Folding Proteins: Apoflavodoxin, a Study Case
García-Fandiño, Rebeca; Bernadó, Pau; Ayuso-Tejedor, Sara; Sancho, Javier; Orozco, Modesto
2012-01-01
The early stages of the thermal unfolding of apoflavodoxin have been determined by using atomistic multi microsecond-scale molecular dynamics (MD) simulations complemented with a variety of experimental techniques. Results strongly suggest that the intermediate is reached very early in the thermal unfolding process and that it has the properties of an “activated” form of the native state, where thermal fluctuations in the loops break loop-loop contacts. The unrestrained loops gain then kinetic energy corrupting short secondary structure elements without corrupting the core of the protein. The MD-derived ensembles agree with experimental observables and draw a picture of the intermediate state inconsistent with a well-defined structure and characteristic of a typical partially disordered protein. Our results allow us to speculate that proteins with a well packed core connected by long loops might behave as partially disordered proteins under native conditions, or alternatively behave as three state folders. Small details in the sequence, easily tunable by evolution, can yield to one or the other type of proteins. PMID:22927805
Kuryavyi, V; Majumdar, A; Shallop, A; Chernichenko, N; Skripkin, E; Jones, R; Patel, D J
2001-06-29
The architecture of G-G-G-G tetrad-aligned DNA quadruplexes in monovalent cation solution is dependent on the directionality of the four strands, which in turn are defined by loop connectivities and the guanine syn/anti distribution along individual strands and within individual G-G-G-G tetrads. The smallest unimolecular G-quadruplex belongs to the d(G2NnG2NnG2NnG2) family, which has the potential to form two stacked G-tetrads linked by Nn loop connectivities. Previous studies have focused on the thrombin-binding DNA aptamer d(G2T2G2TGTG2T2G2), where Nn was T2 for the first and third connecting loops and TGT for the middle connecting loop. This DNA aptamer in K(+) cation solution forms a unimolecular G-quadruplex stabilized by two stacked G(syn)-G(anti)-G(syn)-G(anti) tetrads, adjacent strands which are antiparallel to each other and edge-wise connecting T2, TGT and T2 loops. We now report on the NMR-based solution structure of the d(G2T4G2CAG2GT4G2T) sequence, which differs from the thrombin-binding DNA aptamer sequence in having longer first (T4) and third (GT4) loops and a shorter (CA) middle loop. This d(G2T4G2CAG2GT4G2T) sequence in Na(+) cation solution forms a unimolecular G-quadruplex stabilized by two stacked G(syn)-G(syn)-G(anti)-G(anti) tetrads, adjacent strands which have one parallel and one antiparallel neighbors and distinct non-edge-wise loop connectivities. Specifically, the longer first (T4) and third (GT4) loops are of the diagonal type while the shorter middle loop is of the double chain reversal type. In addition, the pair of stacked G-G-G-G tetrads are flanked on one side by a G-(T-T) triad and on the other side by a T-T-T triple. The distinct differences in strand directionalities, loop connectivities and syn/anti distribution within G-G-G-G tetrads between the thrombin-binding DNA aptamer d(G2T2G2TGTG2T2G2) quadruplex reported previously, and the d(G2T4G2CAG2GT4G2T) quadruplex reported here, reinforces the polymorphic nature of higher-order DNA architectures. Further, these two small unimolecular G-quadruplexes, which are distinct from each other and from parallel-stranded G-quadruplexes, provide novel targets for ligand recognition. Our results demonstrate that the double chain reversal loop connectivity identified previously by our laboratory within the Tetrahymena telomere d(T2G4)4 quadruplex, is a robust folding topology, since it has now also been observed within the d(G2T4G2CAG2GT4G2T) quadruplex. The identification of a G-(T-T) triad and a T-T-T triple, expands on the available recognition alignments for base triads and triples. Copyright 2001 Academic Press.
NASA Astrophysics Data System (ADS)
Christe, Steven; Inglis, A.; Aschwanden, M.; Dennis, B.
2011-05-01
On 2010 October 16th SDO/AIA observed its first flare using automatic exposure control. Coincidentally, this flare also exhibited a large number of interesting features. Firstly, a large ribbon significantly to the solar west of the flare kernel was ignited and was visible in all AIA wavelengths, posing the question as to how this energy was deposited and how it relates to the main flare site. A faint blast wave also emanates from the flare kernel, visible in AIA and observed traveling to the solar west at an estimated speed of 1000 km/s. This blast wave is associated with a weak white-light CME observed with STEREO B and a Type II radio burst observed from Green Bank Observatory (GBSRBS). One possibility is that this blast wave is responsible for the heating of the ribbon. However, closer scrutiny reveals that the flare site and the ribbon are in fact connected magnetically via coronal loops which are heated during the main energy release. These loops are distinct from the expected hot, post-flare loops present within the main flare kernel. RHESSI spectra indicate that these loops are heated to approximately 10 MK in the immediate flare aftermath. Using the multi-temperature capabilities of AIA in combination with RHESSI, and by employing the cross-correlation mapping technique, we are able to measure the loop temperatures as a function of time over several post-flare hours and hence measure the loop cooling rate. We find that the time delay between the appearance of loops in the hottest channel, 131 A, and the cool 171 A channel, is 70 minutes. Yet the causality of this event remains unclear. Is the ribbon heated via these interconnected loops or via a blast wave?
Lustig, B; Lin, N H; Smith, S M; Jernigan, R L; Jeang, K T
1995-01-01
A prototypic hammerhead ribozyme has three helices that surround an asymmetrical central core loop. We have mutagenized a hammerhead type ribozyme. In agreement with previous studies, progressive removal of stem-loop II from a three stemmed ribozyme showed that this region is not absolutely critical for catalysis. However, complete elimination of stem II and its loop did reduce, but did not eliminate, function. In a stem-loop II-deleted ribozyme, activity was best preserved when a purine, preferably a G, was present at position 10.1. This G contributed to catalysis irregardless of its role as either one part of a canonical pair with a C residue at 11.1 or a lone nucleotide with C (11.1) deleted. Computational methods using lattices generated 87 million three-dimensional chain forms for a stem-loop II-deleted RNA complex that preserved one potential G.C base pair at positions 10.1 and 11.1. This exhaustive set of chain forms included one major class of structures with G(10.1) being spatially proximal to the GUCX cleavage site of the substrate strand. Strong correlations were observed between colinear arrangement of stems I and III, constraints of base-pairing in the central core loop, and one particular placement of G(10.1) relative to the cleavage site. Our calculations of a stem-loop II-deleted ribozyme indicate that without needing to invoke any other constraints, the inherent asymmetry in the lengths of the two loop strands (3 nt in one and 7 nt in the other) that compose the core and flank G10.1-C11.1 stipulated strongly this particular G placement. This suggests that the hammerhead ribozyme maintains an asymmetry in its internal loop for a necessary structure/function reason. Images PMID:7567466
Kamariah, Neelagandan; Eisenhaber, Birgit; Eisenhaber, Frank; Grüber, Gerhard
2018-04-01
Peroxiredoxins (Prxs) catalyse the rapid reduction of hydrogen peroxide, organic hydroperoxide and peroxynitrite, using a fully conserved peroxidatic cysteine (C P ) located in a conserved sequence Pxxx(T/S)xxC P motif known as C P -loop. In addition, Prxs are involved in cellular signaling pathways and regulate several redox-dependent process related disease. The effective catalysis of Prxs is associated with alterations in the C P -loop between reduced, Fully Folded (FF), and oxidized, Locally Unfolded (LU) conformations, which are linked to dramatic changes in the oligomeric structure. Despite many studies, little is known about the precise structural and dynamic roles of the C P -loop on Prxs functions. Herein, the comprehensive biochemical and biophysical studies on Escherichia coli alkyl hydroperoxide reductase subunit C (EcAhpC) and the C P -loop mutants, EcAhpC-F45A and EcAhpC-F45P reveal that the reduced form of the C P -loop adopts conformational dynamics, which is essential for effective peroxide reduction. Furthermore, the point mutants alter the structure and dynamics of the reduced form of the C P -loop and, thereby, affect substrate binding, catalysis, oligomerization, stability and overoxidiation. In the oxidized form, due to restricted C P -loop dynamics, the EcAhpC-F45P mutant favours a decamer formation, which enhances the effective recycling by physiological reductases compared to wild-type EcAhpC. In addition, the study reveals that residue F45 increases the specificity of Prxs-reductase interactions. Based on these studies, we propose an evolution of the C P -loop with confined sequence conservation within Prxs subfamilies that might optimize the functional adaptation of Prxs into various physiological roles. Copyright © 2018 Elsevier Inc. All rights reserved.
Cui, Yanfang; Tae, Han-Shen; Norris, Nicole C; Karunasekara, Yamuna; Pouliquin, Pierre; Board, Philip G; Dulhunty, Angela F; Casarotto, Marco G
2009-03-01
The II-III loop of the dihydropyridine receptor (DHPR) alpha(1s) subunit is a modulator of the ryanodine receptor (RyR1) Ca(2+) release channel in vitro and is essential for skeletal muscle contraction in vivo. Despite its importance, the structure of this loop has not been reported. We have investigated its structure using a suite of NMR techniques which revealed that the DHPR II-III loop is an intrinsically unstructured protein (IUP) and as such belongs to a burgeoning structural class of functionally important proteins. The loop does not possess a stable tertiary fold: it is highly flexible, with a strong N-terminal helix followed by nascent helical/turn elements and unstructured segments. Its residual structure is loosely globular with the N and C termini in close proximity. The unstructured nature of the II-III loop may allow it to easily modify its interaction with RyR1 following a surface action potential and thus initiate rapid Ca(2+) release and contraction. The in vitro binding partner for the II-III was investigated. The II-III loop interacts with the second of three structurally distinct SPRY domains in RyR1, whose function is unknown. This interaction occurs through two preformed N-terminal alpha-helical regions and a C-terminal hydrophobic element. The A peptide corresponding to the helical N-terminal region is a common probe of RyR function and binds to the same SPRY domain as the full II-III loop. Thus the second SPRY domain is an in vitro binding site for the II-III loop. The possible in vivo role of this region is discussed.
Madziva, Michael T; Mkhize, Nonhlanhla N; Flanagan, Colleen A; Katz, Arieh A
2015-08-15
The type II GnRH receptor (GnRH-R2) in contrast to mammalian type I GnRH receptor (GnRH-R1) has a cytosolic carboxy-terminal tail. We investigated the role of β-arrestin 1 in GnRH-R2-mediated signalling and mapped the regions in GnRH-R2 required for recruitment of β-arrestin, employing internalization assays. We show that GnRH-R2 activation of ERK is dependent on β-arrestin and protein kinase C. Appending the tail of GnRH-R2 to GnRH-R1 enabled GRK- and β-arrestin-dependent internalization of the chimaeric receptor. Surprisingly, carboxy-terminally truncated GnRH-R2 retained β-arrestin and GRK-dependent internalization, suggesting that β-arrestin interacts with additional elements of GnRH-R2. Mutating serine and threonine or basic residues of intracellular loop 3 did not abolish β-arrestin 1-dependent internalization but a receptor lacking these basic residues and the carboxy-terminus showed no β-arrestin 1-dependent internalization. Our results suggest that basic residues at the amino-terminal end of intracellular loop 3 or the carboxy-terminal tail are required for β-arrestin dependent internalization. Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.
"Learning" Can Improve the Blood Glucose Control Performance for Type 1 Diabetes Mellitus.
Wang, Youqing; Zhang, Jinping; Zeng, Fanmao; Wang, Na; Chen, Xiaoping; Zhang, Bo; Zhao, Dong; Yang, Wenying; Cobelli, Claudio
2017-01-01
A learning-type artificial pancreas has been proposed to exploit the repetitive nature in the blood glucose dynamics. We clinically evaluated the efficacy of the learning-type artificial pancreas. We conducted a pilot clinical study in 10 participants of mean age 36.1 years (standard deviation [SD] 12.7; range 16-58) with type 1 diabetes. Each trial was conducted for eight consecutive mornings. The first two mornings were open-loop to obtain the individualized parameters. Then, the following six mornings were closed-loop, during which a learning-type model predictive control algorithm was employed to calculate the insulin infusion rate. To evaluate the algorithm's robustness, each participant took exercise or consumed alcohol on the fourth or sixth closed-loop day and the order was determined randomly. The primary outcome was the percentage of time spent in the target glucose range of 3.9-8.0 mmol/L between 0900 and 1200 h. The percentage of time with glucose spent in target range was significantly improved from 51.6% on day 1 to 71.6% on day 3 (mean difference between groups 17.9%, confidence interval [95% CI] 3.6-32.1; P = 0.020). There were no hypoglycemic episodes developed on day 3 compared with two episodes on day 1. There was no difference in the percentage of time with glucose spent in target range between exercise day versus day 5 and alcohol day versus day 5. The learning-type artificial pancreas system achieved good glycemic regulation and provided increased effectiveness over time. It showed a satisfactory performance even when the blood glucose was challenged by exercise or alcohol.
Shoemaker, Adam; Grange, Robert W.; Abaid, Nicole; Leonessa, Alexander
2017-01-01
Functional Electrical Stimulation is a promising approach to treat patients by stimulating the peripheral nerves and their corresponding motor neurons using electrical current. This technique helps maintain muscle mass and promote blood flow in the absence of a functioning nervous system. The goal of this work is to control muscle contractions from FES via three different algorithms and assess the most appropriate controller providing effective stimulation of the muscle. An open-loop system and a closed-loop system with three types of model-free feedback controllers were assessed for tracking control of skeletal muscle contractions: a Proportional-Integral (PI) controller, a Model Reference Adaptive Control algorithm, and an Adaptive Augmented PI system. Furthermore, a mathematical model of a muscle-mass-spring system was implemented in simulation to test the open-loop case and closed-loop controllers. These simulations were carried out and then validated through experiments ex vivo. The experiments included muscle contractions following four distinct trajectories: a step, sine, ramp, and square wave. Overall, the closed-loop controllers followed the stimulation trajectories set for all the simulated and tested muscles. When comparing the experimental outcomes of each controller, we concluded that the Adaptive Augmented PI algorithm provided the best closed-loop performance for speed of convergence and disturbance rejection. PMID:28273101
Damage structures in fission-neutron irradiated Ni-based alloys at high temperatures
NASA Astrophysics Data System (ADS)
Yamakawa, K.; Shimomura, Y.
1999-01-01
The defects formed in Ni based (Ni-Si, Ni-Cu and Ni-Fe) alloys which were irradiated with fission-neutrons were examined by electron microscopy. Irradiations were carried out at 473 K and 573 K. In the 473 K irradiated specimens, a high density of large interstitial loops and small vacancy clusters with stacking fault tetrahedra (SFT) were observed. The number densities of these two types of defects did not strongly depend on the amount of solute atoms in each alloy. The density of the loops in Ni-Si alloys was much higher than those in Ni-Cu and Ni-Fe alloys, while the density of SFT only slightly depended on the kind of solute. Also, the size of the loops depended on the kinds and amounts of solute. In 573 K irradiated Ni-Cu specimens, a high density of dislocation lines developed during the growth of interstitial loops. In Ni-Si alloys, the number density and size of the interstitial loops changed as a function of the amount of solute. Voids were formed in Ni-Cu alloys but scarcely formed in Ni-Si alloys. The number density of voids was one hundredth of that of SFT observed in 473 K irradiated Ni-Cu alloys. Possible formation processes of interstitial loops, SFT dislocation lines and voids are discussed.
NASA Astrophysics Data System (ADS)
He, Cunfu; Yang, Meng; Liu, Xiucheng; Wang, Xueqian; Wu, Bin
2017-11-01
The magnetic hysteresis behaviours of ferromagnetic materials vary with the heat treatment-induced micro-structural changes. In the study, the minor hysteresis loop measurement technique was used to quantitatively characterise the case depth in two types of medium carbon steels. Firstly, high-frequency induction quenching was applied in rod samples to increase the volume fraction of hard martensite to the soft ferrite/pearlite (or sorbite) in the sample surface. In order to determine the effective and total case depth, a complementary error function was employed to fit the measured hardness-depth profiles of induction-hardened samples. The cluster of minor hysteresis loops together with the tangential magnetic field (TMF) were recorded from all the samples and the comparative study was conducted among three kinds of magnetic parameters, which were sensitive to the variation of case depth. Compared to the parameters extracted from an individual minor loop and the distortion factor of the TMF, the magnitude of three-order harmonic of TMF was more suitable to indicate the variation in case depth. Two new minor-loop coefficients were introduced by combining two magnetic parameters with cumulative statistics of the cluster of minor-loops. The experimental results showed that the two coefficients monotonically linearly varied with the case depth within the carefully selected magnetisation region.
Gluons and gravitons at one loop from ambitwistor strings
NASA Astrophysics Data System (ADS)
Geyer, Yvonne; Monteiro, Ricardo
2018-03-01
We present new and explicit formulae for the one-loop integrands of scattering amplitudes in non-supersymmetric gauge theory and gravity, valid for any number of particles. The results exhibit the colour-kinematics duality in gauge theory and the double-copy relation to gravity, in a form that was recently observed in supersymmetric theories. The new formulae are expressed in a particular representation of the loop integrand, with only one quadratic propagator, which arises naturally from the framework of the loop-level scattering equations. The starting point in our work are the expressions based on the scattering equations that were recently derived from ambitwistor string theory. We turn these expressions into explicit formulae depending only on the loop momentum, the external momenta and the external polarisations. These formulae are valid in any number of spacetime dimensions for pure Yang-Mills theory (gluon) and its natural double copy, NS-NS gravity (graviton, dilaton, B-field), and we also present formulae in four spacetime dimensions for pure gravity (graviton). We perform several tests of our results, such as checking gauge invariance and directly matching our four-particle formulae to previously known expressions. While these tests would be elaborate in a Feynman-type representation of the loop integrand, they become straightforward in the representation we use.
NASA Astrophysics Data System (ADS)
Satoh, Y.; Yoshiie, T.; Arai, S.
2018-03-01
We conducted systematic experiments of defect structure development in Cu base binary alloys under 1000 kV electron irradiation at temperatures higher than 300 K, using in situ observations with high voltage electron microscopy. This report describes the effects of undersize elements: Co (-3.78%), Ni (-8.45%) and Be (-26.45%). The volume size factors are given in parentheses. The amounts of the respective elements were 2, 0.3, 0.05 at.%, or less. In Cu-Ni and Cu-Co and in the reference Cu, temperature dependence of the number density of interstitial-type dislocation loops had a down peak (i.e. loops hardly formed) at approximately 373 K, attributed to unexpected impurity atoms. Above the down-peak temperature, the addition of Co or Ni increased the loop number density through continuous nucleation of loops, extended the loop formation to higher temperatures, and decreased the apparent activation energy of loop growth rate. The addition of Be for 0.3 at.% or more delayed loop formation after formation of stacking fault tetrahedra (SFTs) around 300 K. The apparent mobility of self-interstitial atoms is expected to be smaller than that of vacancies because of strong binding with Be. Loop formation at temperatures higher than 373 K was enhanced by Be for 0.3 or 2 at.%, although it was suppressed greatly for 0.05 at.% or less. All undersize atoms increased the stability of SFTs under irradiation. Mechanisms of those effects were discussed and were briefly compared with earlier results found for oversize elements in Cu.
NASA Astrophysics Data System (ADS)
Kawanishi, S.; Takara, H.; Saruwatari, M.; Kitoh, T.
1993-09-01
Successful operation of a phase-locked loop is demonstrated using a traveling-wave laser-diode amplifier as a 50 GHz phase detector. Optical gain modulation in the laser diode amplifier and an all-optical clock multiplication technique using a silica-based guided-wave optical circuit are used to achieve the extremely high-speed operation. Also discussed is the possibility of more than 100 GHz operation.
Oscillatory stimuli differentiate adapting circuit topologies
Rahi, Sahand Jamal; Larsch, Johannes; Pecani, Kresti; Katsov, Alexander Y.; Mansouri, Nahal; Tsaneva-Atanasova, Krasimira; Sontag, Eduardo D.; Cross, Frederick R.
2017-01-01
Adapting pathways consist of negative feedback loops (NFLs) or incoherent feedforward loops (IFFLs), which we show can be differentiated using oscillatory stimulation: NFLs but not IFFLs generically show ‘refractory period stabilization’ or ‘period skipping’. Using these signatures and genetic rewiring we identified the circuit dominating cell cycle timing in yeast. In C. elegans AWA neurons we uncovered a Ca2+-NFL, diffcult to find by other means, especially in wild-type, intact animals. (70 words) PMID:28846089
USDA-ARS?s Scientific Manuscript database
Background Circadian rhythms regulate key biological processes influencing metabolic pathways. Dysregulation is associated with type 2 diabetes (T2D) and cardiovascular diseases (CVD). Circadian rhythms are generated by a transcriptional autoregulatory feedback loop involving core clock genes. CLOCK...
Heat Pipe-Assisted Thermoelectric Power Generation Technology for Waste Heat Recovery
NASA Astrophysics Data System (ADS)
Jang, Ju-Chan; Chi, Ri-Guang; Rhi, Seok-Ho; Lee, Kye-Bock; Hwang, Hyun-Chang; Lee, Ji-Su; Lee, Wook-Hyun
2015-06-01
Currently, large amounts of thermal energy dissipated from automobiles are emitted through hot exhaust pipes. This has resulted in the need for a new efficient recycling method to recover energy from waste hot exhaust gas. The present experimental study investigated how to improve the power output of a thermoelectric generator (TEG) system assisted by a wickless loop heat pipe (loop thermosyphon) under the limited space of the exhaust gas pipeline. The present study shows a novel loop-type heat pipe-assisted TEG concept to be applied to hybrid vehicles. The operating temperature of a TEG's hot side surface should be as high as possible to maximize the Seebeck effect. The present study shows a novel TEG concept of transferring heat from the source to the sink. This technology can transfer waste heat to any local place with a loop-type heat pipe. The present TEG system with a heat pipe can transfer heat and generate an electromotive force power of around 1.3 V in the case of 170°C hot exhaust gas. Two thermoelectric modules (TEMs) for a conductive block model and four Bi2Te3 TEMs with a heat pipe-assisted model were installed in the condenser section. Heat flows to the condenser section from the evaporator section connected to the exhaust pipe. This novel TEG system with a heat pipe can be placed in any location on an automobile.
NASA Technical Reports Server (NTRS)
Baker, David (Inventor)
1998-01-01
A spacecraft includes heat-generating payload equipment, and a heat transport system with a cold plate thermally coupled to the equipment and a capillary-wick evaporator, for evaporating coolant liquid to cool the equipment. The coolant vapor is coupled to a condenser and in a loop back to the evaporator. A heated coolant reservoir is coupled to the loop for pressure control. If the wick is not wetted, heat transfer will not begin or continue. A pair of check valves are coupled in the loop, and the heater is cycled for augmentation pumping of coolant to and from the reservoir. This augmentation pumping, in conjunction with the check valves, wets the wick. The wick liquid storage capacity allows the augmentation pump to provide continuous pulsed liquid flow to assure continuous vapor transport and a continuously operating heat transport system. The check valves are of the ball type to assure maximum reliability. However, any type of check valve can be used, including designs which are preloaded in the closed position. The check valve may use any ball or poppet material which resists corrosion. For optimum performance during testing on Earth, the ball or poppet would have neutral buoyancy or be configured in a closed position when the heat transport system is not operating. The ball may be porous to allow passage of coolant vapor.
DOE Office of Scientific and Technical Information (OSTI.GOV)
Zhao, G. Q.; Chen, L.; Wu, D. J.
Solar type I radio storms are long-lived radio emissions from the solar atmosphere. It is believed that these type I storms are produced by energetic electrons trapped within a closed magnetic structure and are characterized by a high ordinary (O) mode polarization. However, the microphysical nature of these emissions is still an open problem. Recently, Wu et al. found that Alfven waves (AWs) can significantly influence the basic physics of wave-particle interactions by modifying the resonant condition. Taking the effects of AWs into account, this work investigates electron cyclotron maser emission driven by power-law energetic electrons with a low-energy cutoffmore » distribution, which are trapped in coronal loops by closed solar magnetic fields. The results show that the emission is dominated by the O mode. It is proposed that this O mode emission may possibly be responsible for solar type I radio storms.« less
Interlocked feedforward loops control cell-type-specific Rhodopsin expression in the Drosophila eye.
Johnston, Robert J; Otake, Yoshiaki; Sood, Pranidhi; Vogt, Nina; Behnia, Rudy; Vasiliauskas, Daniel; McDonald, Elizabeth; Xie, Baotong; Koenig, Sebastian; Wolf, Reinhard; Cook, Tiffany; Gebelein, Brian; Kussell, Edo; Nakagoshi, Hideki; Desplan, Claude
2011-06-10
How complex networks of activators and repressors lead to exquisitely specific cell-type determination during development is poorly understood. In the Drosophila eye, expression patterns of Rhodopsins define at least eight functionally distinct though related subtypes of photoreceptors. Here, we describe a role for the transcription factor gene defective proventriculus (dve) as a critical node in the network regulating Rhodopsin expression. dve is a shared component of two opposing, interlocked feedforward loops (FFLs). Orthodenticle and Dve interact in an incoherent FFL to repress Rhodopsin expression throughout the eye. In R7 and R8 photoreceptors, a coherent FFL relieves repression by Dve while activating Rhodopsin expression. Therefore, this network uses repression to restrict and combinatorial activation to induce cell-type-specific expression. Furthermore, Dve levels are finely tuned to yield cell-type- and region-specific repression or activation outcomes. This interlocked FFL motif may be a general mechanism to control terminal cell-fate specification. Copyright © 2011 Elsevier Inc. All rights reserved.
The other fiber, the other fabric, the other way
NASA Astrophysics Data System (ADS)
Stephens, Gary R.
1993-02-01
Coaxial cable and distributed switches provide a way to configure high-speed Fiber Channel fabrics. This type of fabric provides a cost-effective alternative to a fabric of optical fibers and centralized cross-point switches. The fabric topology is a simple tree. Products using parallel busses require a significant change to migrate to a serial bus. Coaxial cables and distributed switches require a smaller technology shift for these device manufacturers. Each distributed switch permits both medium type and speed changes. The fabric can grow and bridge to optical fibers as the needs expand. A distributed fabric permits earlier entry into high-speed serial operations. For very low-cost fabrics, a distributed switch may permit a link configured as a loop. The loop eliminates half of the ports when compared to a switched point-to-point fabric. A fabric of distributed switches can interface to a cross-point switch fabric. The expected sequence of migration is: closed loops, small closed fabrics, and, finally, bridges, to connect optical cross-point switch fabrics. This paper presents the concept of distributed fabrics, including address assignment, frame routing, and general operation.
Computational study of stability of an H-H-type pseudoknot motif.
Wang, Jun; Zhao, Yunjie; Wang, Jian; Xiao, Yi
2015-12-01
Motifs in RNA tertiary structures are important to their structural organizations and biological functions. Here we consider an H-H-type pseudoknot (HHpk) motif that consists of two hairpins connected by a junction loop and with kissing interactions between the two hairpin loops. Such a tertiary structural motif is recurrently found in RNA tertiary structures, but is difficult to predict computationally. So it is important to understand the mechanism of its formation and stability. Here we investigate the stability of the HHpk tertiary structure by using an all-atom molecular dynamics simulation. The results indicate that the HHpk tertiary structure is stable. However, it is found that this stability is not due to the helix-helix packing, as is usually expected, but is maintained by the combined action of the kissing hairpin loops and junctions, although the former plays the main role. Stable HHpk motifs may form structural platforms for the molecules to realize their biological functions. These results are useful for understanding the construction principle of RNA tertiary structures and structure prediction.
Kang, Yeon Hee; Kirik, Victor; Hulskamp, Martin; Nam, Kyoung Hee; Hagely, Katherine; Lee, Myeong Min; Schiefelbein, John
2009-01-01
The specification of cell fates during development requires precise regulatory mechanisms to ensure robust cell type patterns. Theoretical models of pattern formation suggest that a combination of negative and positive feedback mechanisms are necessary for efficient specification of distinct fates in a field of differentiating cells. Here, we examine the role of the R2R3-MYB transcription factor gene, AtMYB23 (MYB23), in the establishment of the root epidermal cell type pattern in Arabidopsis thaliana. MYB23 is closely related to, and is positively regulated by, the WEREWOLF (WER) MYB gene during root epidermis development. Furthermore, MYB23 is able to substitute for the function of WER and to induce its own expression when controlled by WER regulatory sequences. We also show that the MYB23 protein binds to its own promoter, suggesting a MYB23 positive feedback loop. The localization of MYB23 transcripts and MYB23-green fluorescent protein (GFP) fusion protein, as well as the effect of a chimeric MYB23-SRDX repressor construct, links MYB23 function to the developing non-hair cell type. Using mutational analyses, we find that MYB23 is necessary for precise establishment of the root epidermal pattern, particularly under conditions that compromise the cell specification process. These results suggest that MYB23 participates in a positive feedback loop to reinforce cell fate decisions and ensure robust establishment of the cell type pattern in the Arabidopsis root epidermis. PMID:19395683
Kang, Yeon Hee; Kirik, Victor; Hulskamp, Martin; Nam, Kyoung Hee; Hagely, Katherine; Lee, Myeong Min; Schiefelbein, John
2009-04-01
The specification of cell fates during development requires precise regulatory mechanisms to ensure robust cell type patterns. Theoretical models of pattern formation suggest that a combination of negative and positive feedback mechanisms are necessary for efficient specification of distinct fates in a field of differentiating cells. Here, we examine the role of the R2R3-MYB transcription factor gene, AtMYB23 (MYB23), in the establishment of the root epidermal cell type pattern in Arabidopsis thaliana. MYB23 is closely related to, and is positively regulated by, the WEREWOLF (WER) MYB gene during root epidermis development. Furthermore, MYB23 is able to substitute for the function of WER and to induce its own expression when controlled by WER regulatory sequences. We also show that the MYB23 protein binds to its own promoter, suggesting a MYB23 positive feedback loop. The localization of MYB23 transcripts and MYB23-green fluorescent protein (GFP) fusion protein, as well as the effect of a chimeric MYB23-SRDX repressor construct, links MYB23 function to the developing non-hair cell type. Using mutational analyses, we find that MYB23 is necessary for precise establishment of the root epidermal pattern, particularly under conditions that compromise the cell specification process. These results suggest that MYB23 participates in a positive feedback loop to reinforce cell fate decisions and ensure robust establishment of the cell type pattern in the Arabidopsis root epidermis.
Structural basis of nSH2 regulation and lipid binding in PI3Kα.
Miller, Michelle S; Schmidt-Kittler, Oleg; Bolduc, David M; Brower, Evan T; Chaves-Moreira, Daniele; Allaire, Marc; Kinzler, Kenneth W; Jennings, Ian G; Thompson, Philip E; Cole, Philip A; Amzel, L Mario; Vogelstein, Bert; Gabelli, Sandra B
2014-07-30
We report two crystal structures of the wild-type phosphatidylinositol 3-kinase α (PI3Kα) heterodimer refined to 2.9 Å and 3.4 Å resolution: the first as the free enzyme, the second in complex with the lipid substrate, diC4-PIP₂, respectively. The first structure shows key interactions of the N-terminal SH2 domain (nSH2) and iSH2 with the activation loop that suggest a mechanism by which the enzyme is inhibited in its basal state. In the second structure, the lipid substrate binds in a positively charged pocket adjacent to the ATP-binding site, bordered by the P-loop, the activation loop and the iSH2 domain. An additional lipid-binding site was identified at the interface of the ABD, iSH2 and kinase domains. The ability of PI3Kα to bind an additional PIP₂ molecule was confirmed in vitro by fluorescence quenching experiments. The crystal structures reveal key differences in the way the nSH2 domain interacts with wild-type p110α and with the oncogenic mutant p110αH1047R. Increased buried surface area and two unique salt-bridges observed only in the wild-type structure suggest tighter inhibition in the wild-type PI3Kα than in the oncogenic mutant. These differences may be partially responsible for the increased basal lipid kinase activity and increased membrane binding of the oncogenic mutant.
Roles of Type 1A Topoisomerases in Genome Maintenance in Escherichia coli
Usongo, Valentine; Drolet, Marc
2014-01-01
In eukaryotes, type 1A topoisomerases (topos) act with RecQ-like helicases to maintain the stability of the genome. Despite having been the first type 1A enzymes to be discovered, much less is known about the involvement of the E. coli topo I (topA) and III (topB) enzymes in genome maintenance. These enzymes are thought to have distinct cellular functions: topo I regulates supercoiling and R-loop formation, and topo III is involved in chromosome segregation. To better characterize their roles in genome maintenance, we have used genetic approaches including suppressor screens, combined with microscopy for the examination of cell morphology and nucleoid shape. We show that topA mutants can suffer from growth-inhibitory and supercoiling-dependent chromosome segregation defects. These problems are corrected by deleting recA or recQ but not by deleting recJ or recO, indicating that the RecF pathway is not involved. Rather, our data suggest that RecQ acts with a type 1A topo on RecA-generated recombination intermediates because: 1-topo III overproduction corrects the defects and 2-recQ deletion and topo IIII overproduction are epistatic to recA deletion. The segregation defects are also linked to over-replication, as they are significantly alleviated by an oriC::aph suppressor mutation which is oriC-competent in topA null but not in isogenic topA+ cells. When both topo I and topo III are missing, excess supercoiling triggers growth inhibition that correlates with the formation of extremely long filaments fully packed with unsegregated and diffuse DNA. These phenotypes are likely related to replication from R-loops as they are corrected by overproducing RNase HI or by genetic suppressors of double topA rnhA mutants affecting constitutive stable DNA replication, dnaT::aph and rne::aph, which initiates from R-loops. Thus, bacterial type 1A topos maintain the stability of the genome (i) by preventing over-replication originating from oriC (topo I alone) and R-loops and (ii) by acting with RecQ. PMID:25102178
Impact of Type II Spicules in the Corona: Simulations and Synthetic Observables
NASA Astrophysics Data System (ADS)
Martínez-Sykora, Juan; De Pontieu, Bart; De Moortel, Ineke; Hansteen, Viggo H.; Carlsson, Mats
2018-06-01
The role of type II spicules in the corona has been a much debated topic in recent years. This paper aims to shed light on the impact of type II spicules in the corona using novel 2.5D radiative MHD simulations, including ion–neutral interaction effects with the Bifrost code. We find that the formation of simulated type II spicules, driven by the release of magnetic tension, impacts the corona in various manners. Associated with the formation of spicules, the corona exhibits (1) magneto-acoustic shocks and flows, which supply mass to coronal loops, and (2) transversal magnetic waves and electric currents that propagate at Alfvén speeds. The transversal waves and electric currents, generated by the spicule’s driver and lasting for many minutes, are dissipated and heat the associated loop. These complex interactions in the corona can be connected with blueshifted secondary components in coronal spectral lines (red–blue asymmetries) observed with Hinode/EIS and SOHO/SUMER, as well as the EUV counterpart of type II spicules and propagating coronal disturbances observed with the 171 Å and 193 Å SDO/AIA channels.
In silico preclinical trials: a proof of concept in closed-loop control of type 1 diabetes.
Kovatchev, Boris P; Breton, Marc; Man, Chiara Dalla; Cobelli, Claudio
2009-01-01
Arguably, a minimally invasive system using subcutaneous (s.c.) continuous glucose monitoring (CGM) and s.c. insulin delivery via insulin pump would be a most feasible step to closed-loop control in type 1 diabetes mellitus (T1DM). Consequently, diabetes technology is focusing on developing an artificial pancreas using control algorithms to link CGM with s.c. insulin delivery. The future development of the artificial pancreas will be greatly accelerated by employing mathematical modeling and computer simulation. Realistic computer simulation is capable of providing invaluable information about the safety and the limitations of closed-loop control algorithms, guiding clinical studies, and out-ruling ineffective control scenarios in a cost-effective manner. Thus computer simulation testing of closed-loop control algorithms is regarded as a prerequisite to clinical trials of the artificial pancreas. In this paper, we present a system for in silico testing of control algorithms that has three principal components: (1) a large cohort of n=300 simulated "subjects" (n=100 adults, 100 adolescents, and 100 children) based on real individuals' data and spanning the observed variability of key metabolic parameters in the general population of people with T1DM; (2) a simulator of CGM sensor errors representative of Freestyle Navigator™, Guardian RT, or Dexcom™ STS™, 7-day sensor; and (3) a simulator of discrete s.c. insulin delivery via OmniPod Insulin Management System or Deltec Cozmo(®) insulin pump. The system has been shown to represent adequate glucose fluctuations in T1DM observed during meal challenges, and has been accepted by the Food and Drug Administration as a substitute to animal trials in the preclinical testing of closed-loop control strategies. © Diabetes Technology Society
Wang, Aibing; Zhang, Lijie; Khayat, Reza
2016-01-01
Outbreaks of porcine circovirus (PCV) type 2 (PCV2)-associated diseases have caused substantial economic losses worldwide in the last 20 years. The PCV capsid protein (Cap) is the sole structural protein and main antigenic determinant of this virus. In this study, not only were phylogenetic trees reconstructed, but variations of surface structure of the PCV capsid were analysed in the course of evolution. Unique surface patterns of the icosahedral fivefold axes of the PCV2 capsid were identified and characterized, all of which were absent in PCV type 1 (PCV1). Icosahedral fivefold axes, decorated with Loops BC, HI and DE, were distinctly different between PCV2 and PCV1. Loops BC, determining the outermost surface around the fivefold axes of PCV capsids, had limited homology between Caps of PCV1 and PCV2. A conserved tyrosine phosphorylation motif in Loop HI that might be recognized by non-receptor tyrosine kinase(s) in vivo was present only in PCV2. Particularly, the concurrent presence of 60 pairs of the conserved tyrosine and a canonical PXXP motif on the PCV2 capsid surface could be a mechanism for PXXP motif binding to and activation of an SH3-domain-containing tyrosine kinase in host cells. Additionally, a conserved cysteine in Loop DE of the PCV2 Cap was substituted by an arginine in PCV1, indicating potentially distinct assembly mechanisms of the capsid in vitro between PCV1 and PCV2. Therefore, these unique patterns on the PCV2 capsid surface, absent in PCV1 isolates, might be related to cell entry, virus function and pathogenesis. PMID:27902320
Wang, Naidong; Zhan, Yang; Wang, Aibing; Zhang, Lijie; Khayat, Reza; Yang, Yi
2016-12-01
Outbreaks of porcine circovirus (PCV) type 2 (PCV2)-associated diseases have caused substantial economic losses worldwide in the last 20 years. The PCV capsid protein (Cap) is the sole structural protein and main antigenic determinant of this virus. In this study, not only were phylogenetic trees reconstructed, but variations of surface structure of the PCV capsid were analysed in the course of evolution. Unique surface patterns of the icosahedral fivefold axes of the PCV2 capsid were identified and characterized, all of which were absent in PCV type 1 (PCV1). Icosahedral fivefold axes, decorated with Loops BC, HI and DE, were distinctly different between PCV2 and PCV1. Loops BC, determining the outermost surface around the fivefold axes of PCV capsids, had limited homology between Caps of PCV1 and PCV2. A conserved tyrosine phosphorylation motif in Loop HI that might be recognized by non-receptor tyrosine kinase(s) in vivo was present only in PCV2. Particularly, the concurrent presence of 60 pairs of the conserved tyrosine and a canonical PXXP motif on the PCV2 capsid surface could be a mechanism for PXXP motif binding to and activation of an SH3-domain-containing tyrosine kinase in host cells. Additionally, a conserved cysteine in Loop DE of the PCV2 Cap was substituted by an arginine in PCV1, indicating potentially distinct assembly mechanisms of the capsid in vitro between PCV1 and PCV2. Therefore, these unique patterns on the PCV2 capsid surface, absent in PCV1 isolates, might be related to cell entry, virus function and pathogenesis.
Xia, Chuanwu; Hamdane, Djemel; Shen, Anna L.; Choi, Vivian; Kasper, Charles B.; Pearl, Naw May; Zhang, Haoming; Im, Sang-Choul; Waskell, Lucy; Kim, Jung-Ja P.
2011-01-01
The crystal structure of NADPH-cytochrome P450 reductase (CYPOR) implies that a large domain movement is essential for electron transfer from NADPH via FAD and FMN to its redox partners. To test this hypothesis, a disulfide bond was engineered between residues Asp147 and Arg514 in the FMN and FAD domains, respectively. The cross-linked form of this mutant protein, designated 147CC514, exhibited a significant decrease in the rate of interflavin electron transfer and large (≥90%) decreases in rates of electron transfer to its redox partners, cytochrome c and cytochrome P450 2B4. Reduction of the disulfide bond restored the ability of the mutant to reduce its redox partners, demonstrating that a conformational change is essential for CYPOR function. The crystal structures of the mutant without and with NADP+ revealed that the two flavin domains are joined by a disulfide linkage and that the relative orientations of the two flavin rings are twisted ∼20° compared with the wild type, decreasing the surface contact area between the two flavin rings. Comparison of the structures without and with NADP+ shows movement of the Gly631–Asn635 loop. In the NADP+-free structure, the loop adopts a conformation that sterically hinders NADP(H) binding. The structure with NADP+ shows movement of the Gly631–Asn635 loop to a position that permits NADP(H) binding. Furthermore, comparison of these mutant and wild type structures strongly suggests that the Gly631–Asn635 loop movement controls NADPH binding and NADP+ release; this loop movement in turn facilitates the flavin domain movement, allowing electron transfer from FMN to the CYPOR redox partners. PMID:21345800
NASA Technical Reports Server (NTRS)
Morrison, Dennis R. (Inventor)
1991-01-01
A spiral vane bioreactor of a perfusion type is described in which a vertical chamber, intended for use in a microgravity condition, has a central rotating filter assembly and has flexible membranes disposed to rotate annularly about the filter assembly. The flexible members have end portions disposed angularly with respect to one another. A fluid replenishment medium is input from a closed loop liquid system to a completely liquid filled chamber containing microcarrier beads, cells and a fluid medium. Output of spent medium is to the closed loop. In the closed loop, the output and input parameters are sensed by sensors. A manifold permits recharging of the nutrients and pH adjustment. Oxygen is supplied and carbon dioxide and bubbles are removed and the system is monitored and controlled by a microprocessor.
Prominence condensation and magnetic levitation in a coronal loop
NASA Technical Reports Server (NTRS)
Van Hoven, G.; Mok, Y.; Drake, J. F.
1992-01-01
The results of a model dynamic simulation of the formation and support of a narrow prominence at the apex of a coronal magnetic loop or arcade are described. The condensation process proceeds via an initial radiative cooling and pressure drop, and a secondary siphon flow from the dense chromospheric ends. The antibuoyancy effect as the prominence forms causes a bending of the confining magnetic field, which propagates toward the semirigid ends of the magnetic loop. Thus, a wide magnetic 'hammock' or well (of the normal-polarity Kippenhahn-Schlueter-type) is formed, which supports the prominence at or near the field apex. The simplicity of this 1.5-dimensional model, with its accompanying diagnostics, elucidates the various contributions to the nonlinear dynamics of prominence condensation and levitation.
Dislocation loop models for the high temperature creep of Al-5.5 at.% Mg alloy
DOE Office of Scientific and Technical Information (OSTI.GOV)
An, S.U.; Blum, W.
1995-04-15
The Al-5.5 at.% Mg alloy is a typical class I type solution hardened material. The dislocation loop models proposed by Orlova and Cadek and by Mills et al., respectively are widely applied models in describing the high temperature creep behavior of the Al-5.5 at.% Mg alloy. These models, however, are in conflict in explaining dislocation loop theory. Orlova and Cadek suggest that in class I solution hardened alloys screw dislocations are relatively easier to migrate because they are subject to a smaller resistance in motion than edge dislocations. Consequently, the migration rate of screw dislocations is higher than that ofmore » edge dislocations. However, since dislocation loops are composed of both screw and edge components, the overall migration rate of screw dislocations are reduced by that of the edge component. Mills et al. on the contrary, used a different dislocation loop model. As the loop grows while it moves, it takes on the shape of an ellipsoid due to the unbalance in growth rate, the score segment moving much easier than the edge. Therefore, as shown in the results of the stress reduction tests, rapid elastic ({Delta} {var_epsilon}{sub el}) and anelastic contraction ({Delta} {var_epsilon}{sub an}) occur simultaneously directly after stress reduction. During the movement of the dislocation loop, the screw component hence becomes severely curved, while the edge component retains a straight line. This has been proved through dislocation structure observations by TEM.« less
DOE Office of Scientific and Technical Information (OSTI.GOV)
Guan, Jian; Bywaters, Stephanie M.; Brendle, Sarah A.
2015-09-15
Cryo-electron microscopy (cryo-EM) was used to solve the structures of human papillomavirus type 16 (HPV16) complexed with fragments of antibody (Fab) from three different neutralizing monoclonals (mAbs): H16.1A, H16.14J, and H263.A2. The structure-function analysis revealed predominantly monovalent binding of each Fab with capsid interactions that involved multiple loops from symmetry related copies of the major capsid protein. The residues identified in each Fab-virus interface map to a conformational groove on the surface of the capsomer. In addition to the known involvement of the FG and HI loops, the DE loop was also found to constitute the core of each epitope.more » Surprisingly, the epitope mapping also identified minor contributions by EF and BC loops. Complementary immunological assays included mAb and Fab neutralization. The specific binding characteristics of mAbs correlated with different neutralizing behaviors in pre- and post-attachment neutralization assays. - Highlights: • We present HPV16-Fab complexes from neutralizing mAbs: H16.1A, H16.14J, and H263.A2. • The structure-function analysis revealed predominantly monovalent binding of each mAb. • Capsid–Fab interactions involved multiple loops from symmetry related L1 proteins. • Besides the known FG and HI loops, epitope mapping also identified DE, EF, and BC loops. • Neutralizing assays complement the structures to show multiple neutralization mechanisms.« less
Fossé, P; Motté, N; Roumier, A; Gabus, C; Muriaux, D; Darlix, J L; Paoletti, J
1996-12-24
Retroviral genomes consist of two identical RNA molecules joined noncovalently near their 5'-ends. Recently, two models have been proposed for RNA dimer formation on the basis of results obtained in vitro with human immunodeficiency virus type 1 RNA and Moloney murine leukemia virus RNA. It was first proposed that viral RNA dimerizes by forming an interstrand quadruple helix with purine tetrads. The second model postulates that RNA dimerization is initiated by a loop-loop interaction between the two RNA molecules. In order to better characterize the dimerization process of retroviral genomic RNA, we analyzed the in vitro dimerization of avian sarcoma-leukosis virus (ASLV) RNA using different transcripts. We determined the requirements for heterodimer formation, the thermal dissociation of RNA dimers, and the influence of antisense DNA oligonucleotides on dimer formation. Our results strongly suggest that purine tetrads are not involved in dimer formation. Data show that an autocomplementary sequence located upstream from the splice donor site and within a major packaging signal plays a crucial role in ASLV RNA dimer formation in vitro. This sequence is able to form a stem-loop structure, and phylogenetic analysis reveals that it is conserved in 28 different avian sarcoma and leukosis viruses. These results suggest that dimerization of ASLV RNA is initiated by a loop-loop interaction between two RNA molecules and provide an additional argument for the ubiquity of the dimerization process via loop-loop interaction.
Tsibris, Athe M N; Sagar, Manish; Gulick, Roy M; Su, Zhaohui; Hughes, Michael; Greaves, Wayne; Subramanian, Mani; Flexner, Charles; Giguel, Françoise; Leopold, Kay E; Coakley, Eoin; Kuritzkes, Daniel R
2008-08-01
Little is known about the in vivo development of resistance to human immunodeficiency virus type 1 (HIV-1) CCR5 antagonists. We studied 29 subjects with virologic failure from a phase IIb study of the CCR5 antagonist vicriviroc (VCV) and identified one individual with HIV-1 subtype C who developed VCV resistance. Studies with chimeric envelopes demonstrated that changes within the V3 loop were sufficient to confer VCV resistance. Resistant virus showed VCV-enhanced replication, cross-resistance to another CCR5 antagonist, TAK779, and increased sensitivity to aminooxypentane-RANTES and the CCR5 monoclonal antibody HGS004. Pretreatment V3 loop sequences reemerged following VCV discontinuation, implying that VCV resistance has associated fitness costs.
Management of Hypoglycemia in Children and Adolescents with Type 1 Diabetes Mellitus.
McGill, Dayna E; Levitsky, Lynne L
2016-09-01
Hypoglycemia and fear of hypoglycemia limit appropriate glycemic control in many children and adolescents with type 1 diabetes. Traditional approaches to the prevention of hypoglycemia including patient education about modifiable risk factors for hypoglycemia (changes in insulin, diet, and exercise) and frequency of self glucose monitoring remain important for hypoglycemia prevention. Continuous glucose monitoring systems with or without a partial closed-loop control of insulin infusion have been very useful in the prevention of hypoglycemia. Oral carbohydrate and parenteral glucagon continue to be the mainstays of hypoglycemia treatment. In the future, we can look forward to regulatory approval of closed-loop insulin delivery and glucose monitoring systems to facilitate euglycemia, as well as glucagon administered by the intranasal route to treat hypoglycemia.
Cooperative and noncooperative magnetization reversal in alnicos
Skomski, Ralph; Ke, Liqin; Kramer, Matthew J.; ...
2017-02-08
Here, we investigate how magnetostatic interactions affect the coercivity of alnico-type magnets. Starting from exact micromagnetic relations, we also analyze two limits, namely cooperative reversal processes operative on short lengths scales and noncooperative reversal processes on long length scales. Furthermore, in alnicos, intrawire interactions are predominantly cooperative, whereas interwire effects are typically noncooperative. However, the transition between the regimes depends on feature size and hysteresis-loop shape, and interwire cooperative effects are largest for nearly rectangular loops. Our analysis revises the common shape-anisotropy interpretation of alnicos.
2006-07-01
dislocation-loop expansion . The new model was used to simulate the thermally reversible flow behaviour for C-S type two-step deformation, and the results are...implemented into the finite element software ABAQUS through a User MATerial subroutine (UMAT). A tangent modulus method [48] was used for the time...locking under a dislocation loop- expansion configuration. This approach was motivated by modern understanding of dislocation mechanisms for Ni3Al
1978-03-01
ADWRESS OInclud Zip Code) 10. PROJECTfTASK/WORK UNI1 VO. Same as 9. above. I1. CONTRACT NO. 13. TYPE OF REPORT PERIOD COVERED (inclusive dews ) Meeting...Discussion of basic principles. c. Lists of y-emitling tracers for gas ; for liquid; commercially available radioisotope milking systems; elements easily...factors) - single phase loops, full flow, (2) prototype calibration (a) gas -water loop, (b) geometry effect. (c) scaling. (3) proof testing - simulation of
Closing the Loop: Control and Robot Navigation in Wireless Sensor Networks
2006-09-05
University of California at Berkeley Technical Report No. UCB/EECS- 2006 -112 http://www.eecs.berkeley.edu/Pubs/TechRpts/ 2006 /EECS- 2006 -112.html September 5... 2006 Report Documentation Page Form ApprovedOMB No. 0704-0188 Public reporting burden for the collection of information is estimated to average 1...DATE 05 SEP 2006 2. REPORT TYPE 3. DATES COVERED 00-00- 2006 to 00-00- 2006 4. TITLE AND SUBTITLE Closing the Loop: Control and Robot Navigation in
A digital optical phase-locked loop for diode lasers based on field programmable gate array
DOE Office of Scientific and Technical Information (OSTI.GOV)
Xu Zhouxiang; Zhang Xian; Huang Kaikai
2012-09-15
We have designed and implemented a highly digital optical phase-locked loop (OPLL) for diode lasers in atom interferometry. The three parts of controlling circuit in this OPLL, including phase and frequency detector (PFD), loop filter and proportional integral derivative (PID) controller, are implemented in a single field programmable gate array chip. A structure type compatible with the model MAX9382/MCH12140 is chosen for PFD and pipeline and parallelism technology have been adapted in PID controller. Especially, high speed clock and twisted ring counter have been integrated in the most crucial part, the loop filter. This OPLL has the narrow beat notemore » line width below 1 Hz, residual mean-square phase error of 0.14 rad{sup 2} and transition time of 100 {mu}s under 10 MHz frequency step. A main innovation of this design is the completely digitalization of the whole controlling circuit in OPLL for diode lasers.« less
Hamada, Megumi; Koda, Keiko
2011-04-01
Although the role of the phonological loop in word-retention is well documented, research in Chinese character retention suggests the involvement of non-phonological encoding. This study investigated whether the extent to which the phonological loop contributes to learning and remembering visually introduced words varies between college-level Chinese ESL learners (N = 20) and native speakers of English (N = 20). The groups performed a paired associative learning task under two conditions (control versus articulatory suppression) with two word types (regularly spelled versus irregularly spelled words) differing in degree of phonological accessibility. The results demonstrated that both groups' recall declined when the phonological loop was made less available (with irregularly spelled words and in the articulatory suppression condition), but the decline was greater for the native group. These results suggest that word learning entails phonological encoding uniformly across learners, but the contribution of phonology varies among learners with diverse linguistic backgrounds.
Control theory analysis of a three-axis VTOL flight director. M.S. Thesis - Pennsylvania State Univ.
NASA Technical Reports Server (NTRS)
Niessen, F. R.
1971-01-01
A control theory analysis of a VTOL flight director and the results of a fixed-based simulator evaluation of the flight-director commands are discussed. The VTOL configuration selected for this study is a helicopter-type VTOL which controls the direction of the thrust vector by means of vehicle-attitude changes and, furthermore, employs high-gain attitude stabilization. This configuration is the same as one which was simulated in actual instrument flight tests with a variable stability helicopter. Stability analyses are made for each of the flight-director commands, assuming a single input-output, multi-loop system model for each control axis. The analyses proceed from the inner-loops to the outer-loops, using an analytical pilot model selected on the basis of the innermost-loop dynamics. The time response of the analytical model of the system is primarily used to adjust system gains, while root locus plots are used to identify dominant modes and mode interactions.
Diagonal dominance for the multivariable Nyquist array using function minimization
NASA Technical Reports Server (NTRS)
Leininger, G. G.
1977-01-01
A new technique for the design of multivariable control systems using the multivariable Nyquist array method was developed. A conjugate direction function minimization algorithm is utilized to achieve a diagonal dominant condition over the extended frequency range of the control system. The minimization is performed on the ratio of the moduli of the off-diagonal terms to the moduli of the diagonal terms of either the inverse or direct open loop transfer function matrix. Several new feedback design concepts were also developed, including: (1) dominance control parameters for each control loop; (2) compensator normalization to evaluate open loop conditions for alternative design configurations; and (3) an interaction index to determine the degree and type of system interaction when all feedback loops are closed simultaneously. This new design capability was implemented on an IBM 360/75 in a batch mode but can be easily adapted to an interactive computer facility. The method was applied to the Pratt and Whitney F100 turbofan engine.
Structural Determinants of Oligomerization of the Aquaporin-4 Channel.
Kitchen, Philip; Conner, Matthew T; Bill, Roslyn M; Conner, Alex C
2016-03-25
The aquaporin (AQP) family of integral membrane protein channels mediate cellular water and solute flow. Although qualitative and quantitative differences in channel permeability, selectivity, subcellular localization, and trafficking responses have been observed for different members of the AQP family, the signature homotetrameric quaternary structure is conserved. Using a variety of biophysical techniques, we show that mutations to an intracellular loop (loop D) of human AQP4 reduce oligomerization. Non-tetrameric AQP4 mutants are unable to relocalize to the plasma membrane in response to changes in extracellular tonicity, despite equivalent constitutive surface expression levels and water permeability to wild-type AQP4. A network of AQP4 loop D hydrogen bonding interactions, identified using molecular dynamics simulations and based on a comparative mutagenic analysis of AQPs 1, 3, and 4, suggest that loop D interactions may provide a general structural framework for tetrameric assembly within the AQP family. © 2016 by The American Society for Biochemistry and Molecular Biology, Inc.
Velagapudi, Sai Pradeep; Pushechnikov, Alexei; Labuda, Lucas P; French, Jonathan M; Disney, Matthew D
2012-11-16
There are many potential RNA drug targets in bacterial, viral, and human transcriptomes. However, there are few small molecules that modulate RNA function. This is due, in part, to a lack of fundamental understanding about RNA-ligand interactions including the types of small molecules that bind to RNA structural elements and the RNA structural elements that bind to small molecules. In an effort to better understand RNA-ligand interactions, we diversified the 2-aminobenzimidazole core (2AB) and probed the resulting library for binding to a library of RNA internal loops. We chose the 2AB core for these studies because it is a privileged scaffold for binding RNA based on previous reports. These studies identified that N-methyl pyrrolidine, imidazole, and propylamine diversity elements at the R1 position increase binding to internal loops; variability at the R2 position is well tolerated. The preferred RNA loop space was also determined for five ligands using a statistical approach and identified trends that lead to selective recognition.
Li, Longbiao
2016-01-01
In this paper, the cyclic fatigue hysteresis loops of 2D woven SiC/SiC ceramic matrix composites (CMCs) at elevated temperatures in steam have been investigated. The interface slip between fibers and the matrix existing in matrix cracking modes 3 and 5, in which matrix cracking and interface debonding occurred in longitudinal yarns, is considered as the major reason for hysteresis loops of 2D woven CMCs. The hysteresis loops of 2D SiC/SiC composites corresponding to different peak stresses, test conditions, and loading frequencies have been predicted using the present analysis. The damage parameter, i.e., the proportion of matrix cracking mode 3 in the entire matrix cracking modes of the composite, and the hysteresis dissipated energy increase with increasing fatigue peak stress. With increasing cycle number, the interface shear stress in the longitudinal yarns decreases, leading to transition of interface slip types of matrix cracking modes 3 and 5. PMID:28773544
Transverse loop colostomy and colonic motility.
Pucciani, F; Ringressi, M N; Maltinti, G; Bechi, P
2014-11-01
The motility of the defunctionalized colon, distal to transverse loop colostomy, has never been studied "in vivo." The aim of our study was to evaluate the influence of transverse loop colostomy on colonic motility. Thirteen patients were examined before stoma closure by means of clinical evaluation and colonic manometry; we studied both the right and distal colon in both fasting and fed patients in order to detect motor activity. Quantitative and qualitative manometric analyses showed that the diverted colon had motor activity even if no regular colonic motor pattern was observed. The spreading of aboral propagated contractions (PCs) was sometimes recorded from the right colon to the distal colon. The response of the proximal and distal colon to a standard meal, when compared to fasting values, increased more than 40 and 35 %, respectively. Stool and gas ejections from the colostomy were never related to a particular type of colonic motility: Motor quiescence such as PCs was chaotically related to stool escape. In conclusion, motility of the defunctionalized colon is preserved in patients with transverse loop colostomy.
Sequence Effect on the Formation of DNA Minidumbbells.
Liu, Yuan; Lam, Sik Lok
2017-11-16
The DNA minidumbbell (MDB) is a recently identified non-B structure. The reported MDBs contain two TTTA, CCTG, or CTTG type II loops. At present, the knowledge and understanding of the sequence criteria for MDB formation are still limited. In this study, we performed a systematic high-resolution nuclear magnetic resonance (NMR) and native gel study to investigate the effect of sequence variations in tandem repeats on the formation of MDBs. Our NMR results reveal the importance of hydrogen bonds, base-base stacking, and hydrophobic interactions from each of the participating residues. We conclude that in the MDBs formed by tandem repeats, C-G loop-closing base pairs are more stabilizing than T-A loop-closing base pairs, and thymine residues in both the second and third loop positions are more stabilizing than cytosine residues. The results from this study enrich our knowledge on the sequence criteria for the formation of MDBs, paving a path for better exploring their potential roles in biological systems and DNA nanotechnology.
The Coronal Monsoon: Thermal Nonequilibrium Revealed by Periodic Coronal Rain
NASA Astrophysics Data System (ADS)
Auchère, Frédéric; Froment, Clara; Soubrié, Elie; Antolin, Patrick; Oliver, Ramon; Pelouze, Gabriel
2018-02-01
We report on the discovery of periodic coronal rain in an off-limb sequence of Solar Dynamics Observatory/Atmospheric Imaging Assembly images. The showers are co-spatial and in phase with periodic (6.6 hr) intensity pulsations of coronal loops of the sort described by Auchère et al. and Froment et al. These new observations make possible a unified description of both phenomena. Coronal rain and periodic intensity pulsations of loops are two manifestations of the same physical process: evaporation/condensation cycles resulting from a state of thermal nonequilibrium. The fluctuations around coronal temperatures produce the intensity pulsations of loops, and rain falls along their legs if thermal runaway cools the periodic condensations down and below transition-region temperatures. This scenario is in line with the predictions of numerical models of quasi-steadily and footpoint heated loops. The presence of coronal rain—albeit non-periodic—in several other structures within the studied field of view implies that this type of heating is at play on a large scale.
NASA Astrophysics Data System (ADS)
Lake, Matthew; Thomas, Steven; Ward, John
2010-01-01
We propose a mechanism for the creation of cosmic string loops with dynamically stabilised windings in the internal space. Assuming a velocity correlations regime in the post-inflationary epoch, such windings are seen to arise naturally in string networks prior to loop formation. The angular momentum of the string in the compact space may then be sufficient to ensure that the windings remain stable after the loop chops off from the network, even if the internal manifold is simply connected. For concreteness we embed our model in the Klebanov-Strassler geometry, which provides a natural mechanism for brane inflation, as well a being one of the best understood compactification schemes in type IIB string theory. We see that the interaction of angular momentum with the string tension causes the loop to oscillate between phases of expansion and contraction. This, in principle, should give rise to a distinct gravitational wave signature, the future detection of which could provide indirect evidence for the existence of extra dimensions.
Adjustable sutures: experimental assessment of final muscle position.
Climenhaga, H W; Pearce, W G
1984-08-01
The likelihood of forward "creep" of muscles recessed with the use of adjustable loops of suture in the correction of strabismus was investigated. Twelve orthotropic dogs underwent both regular and loop recessions of the lateral and medial rectus muscles; the data for two of the dogs were excluded because of loss of muscles. Three months later it was found that in the majority of cases the recessed muscles had minimally advanced from the position of surgical placement. Although the type of recession made little difference to the results, the mean forward creep was much greater for the medial rectus muscles (1.55 +/- 0.68 mm [p less than 0.01] and 2.00 +/- 2.44 mm [p = 0.09] for those undergoing regular and loop recessions respectively) than for the lateral rectus muscles (0.35 +/- 0.58 mm and 0.60 +/- 0.62 mm respectively). During the operations the amount of contraction of the medial rectus muscle had been noted to vary. It is likely that in some instances the tension on the suture loops was insufficient to hold them taut, and the muscles therefore adhered to the sclera at variable sites. Hence, adequate intrinsic muscle tone may be important for predictable clinical results of loop recession.
Transcription of Gypsy Elements in a Y-Chromosome Male Fertility Gene of Drosophila Hydei
Hochstenbach, R.; Harhangi, H.; Schouren, K.; Bindels, P.; Suijkerbuijk, R.; Hennig, W.
1996-01-01
We have found that defective gypsy retrotransposons are a major constituent of the lampbrush loop pair Nooses in the short arm of the Y chromosome of Drosophila hydei. The loop pair is formed by male fertility gene Q during the primary spermatocyte stage of spermatogenesis, each loop being a single transcription unit with an estimated length of 260 kb. Using fluorescent in situ hybridization, we show that throughout the loop transcripts gypsy elements are interspersed with blocks of a tandemly repetitive Y-specific DNA sequence, ay1. Nooses transcripts containing both sequence types show a wide size range on Northern blots, do not migrate to the cytoplasm, and are degraded just before the first meiotic division. Only one strand of ay1 and only the coding strand of gypsy can be detected in the loop transcripts. However, as cloned genomic DNA fragments also display opposite orientations of ay1 and gypsy, such DNA sections cannot be part of the Nooses. Hence, they are most likely derived from the flanking heterochromatin. The direction of transcription of ay1 and gypsy thus appears to be of a functional significance. PMID:8852843