Assessment of a recombinant F1-V fusion protein vaccine intended to protect Canada lynx (Lynx canadensis) from plague

USGS Publications Warehouse

Wolfe, Lisa L.; Shenk, Tanya M.; Powell, Bradford; Rocke, Tonie E.

2011-01-01

As part of an ongoing restoration program in Colorado, USA, we evaluated adverse reactions and seroconversion in captive Canada lynx (Lynx canadensis) after vaccination with a recombinant F1-V fusion protein vaccine against Yersinia pestis, the bacterium that causes plague. Ten adult female lynx received the F1-V vaccine; 10 source- and age-matched lynx remained unvaccinated as controls. All of the vaccinated and control lynx remained apparently healthy throughout the confinement period. We observed no evidence of injection site or systemic reactions to the F1-V vaccine. Among vaccinated lynx, differences in log10 reciprocal antibody titers measured in sera collected before and after vaccination (two doses) ranged from 1.2 to 5.2 for anti-F1 antibodies and from 0.6 to 5.2 for anti-V antibodies; titers in unvaccinated lynx did not change appreciably over the course of confinement prior to release, and thus differences in anti-F1 (P=0.003) and anti-V (P=0.0005) titers were greater among vaccinated lynx than among controls. Although our findings suggest that the F1-V fusion protein vaccine evaluated here is likely to stimulate antibody responses that may help protect Canada lynx from plague, we observed no apparent differences in survival between vaccinated and unvaccinated subject animals. Retrospectively, 22 of 50 (44%; 95% confidence interval 29–59%) unvaccinated lynx captured or recaptured in Colorado during 2000–08 had passive hemagglutination antibody titers >1:16, consistent with exposure to Y. pestis; paired pre- and postrelease titers available for eight of these animals showed titer increases similar in magnitude to those seen in response to vaccination, suggesting at least some lynx may naturally acquire immunity to plague in Colorado habitats.

Feline Leukemia Virus and Other Pathogens as Important Threats to the Survival of the Critically Endangered Iberian Lynx (Lynx pardinus)

PubMed Central

Meli, Marina L.; Cattori, Valentino; Martínez, Fernando; López, Guillermo; Vargas, Astrid; Simón, Miguel A.; Zorrilla, Irene; Muñoz, Alvaro; Palomares, Francisco; López-Bao, Jose V.; Pastor, Josep; Tandon, Ravi; Willi, Barbara; Hofmann-Lehmann, Regina; Lutz, Hans

2009-01-01

Background The Iberian lynx (Lynx pardinus) is considered the most endangered felid species in the world. In order to save this species, the Spanish authorities implemented a captive breeding program recruiting lynxes from the wild. In this context, a retrospective survey on prevalence of selected feline pathogens in free-ranging lynxes was initiated. Methodology/ Principal Findings We systematically analyzed the prevalence and importance of seven viral, one protozoan (Cytauxzoon felis), and several bacterial (e.g., hemotropic mycoplasma) infections in 77 of approximately 200 remaining free-ranging Iberian lynxes of the Doñana and Sierra Morena areas, in Southern Spain, between 2003 and 2007. With the exception of feline immunodeficiency virus (FIV), evidence of infection by all tested feline pathogens was found in Iberian lynxes. Fourteen lynxes were feline leukemia virus (FeLV) provirus-positive; eleven of these were antigenemic (FeLV p27 positive). All 14 animals tested negative for other viral infections. During a six-month period in 2007, six of the provirus-positive antigenemic lynxes died. Infection with FeLV but not with other infectious agents was associated with mortality (p<0.001). Sequencing of the FeLV surface glycoprotein gene revealed a common origin for ten of the eleven samples. The ten sequences were closely related to FeLV-A/61E, originally isolated from cats in the USA. Endogenous FeLV sequences were not detected. Conclusions/Significance It was concluded that the FeLV infection most likely originated from domestic cats invading the lynx's habitats. Data available regarding the time frame, co-infections, and outcome of FeLV-infections suggest that, in contrast to the domestic cat, the FeLV strain affecting the lynxes in 2007 is highly virulent to this species. Our data argue strongly for vaccination of lynxes and domestic cats in and around lynx's habitats in order to prevent further spread of the virus as well as reduction the domestic cat

The missing lynx of Eurasia at its Southern edge: a connection to the critically endangered Balkan lynx.

PubMed

Cömert, Numan; Carlı, Oya; Dinçtürk, H Benan

2018-03-08

The populations of Eurasian lynx in Anatolia are as fragmented as the European populations. Although the origins of and the connections between the European lynx populations have been elucidated, there have been no genetic studies on the lynx populations in Turkey. The lack of genetic and evolutionary information about lynx in Anatolia, which is considered to be a biodiversity hotspot, makes it difficult to track the migration routes during the Quaternary. In this study, we present the genetic characteristics of two isolated lynx populations in Southwest Taurus Mountains and the Turkish Caucasus as well as two individuals from Erzincan area. DNA purified from the ecological scat samples collected from Çığlıkara Nature Reserve in Elmalı-Antalya and Allahuekber Mountains in Sarıkamış-Kars, as well as two roadkill samples from Erzincan, has been analysed for phylogenetic markers such as the mitochondrial DNA control region and cytochrome b. The DNA sequences were compared with haplotypes previously detected in populations from Europe and the Caucasus in order to determine the evolutionary relationships of the populations. This study compares the current genetic structure of some of the Turkish lynx populations to the other lynx genetic data, mostly carried out with museum samples around the world. Three haplotypes were found in three different regions of Anatolia. The Northeast and Southwest populations harbour genetically distinct haplotypes, the latter one, a new haplotype: H13-TR is the only phylogenetic connection to the critically endangered Balkan lynx yet to be described.

Polonium-210 and Caesium-137 in lynx (Lynx lynx), wolverine (Gulo gulo) and wolves (Canis lupus).

PubMed

Gjelsvik, Runhild; Holm, Elis; Kålås, John Atle; Persson, Bertil; Asbrink, Jessica

2014-12-01

Wolves, lynx and wolverines are on the top of the food-chain in northern Scandinavia and Finland. (210)Po and (137)Cs have been analysed in samples of liver, kidney and muscle from 28 wolves from Sweden. In addition blood samples were taken from 27 wolves. In 9 of the wolves, samples of muscle, liver and blood were analysed for (210)Po. Samples of liver and muscle were collected from 16 lynx and 16 wolverines from Norway. The liver samples were analysed for (210)Po and (137)Cs. Only (137)Cs analyses were carried out for the muscle samples. The wolves were collected during the winter 2010 and 2011, while the samples for lynx and wolverines were all from 2011. The activity concentrations of (210)Po in wolves were higher for liver (range 20-523 Bq kg(-1) d.w.) and kidney (range 24-942 Bq kg(-1) d.w.) than muscle (range 1-43 Bq kg(-1) d.w.) and blood (range 2-54 Bq kg(-1) d.w.). Activity ratios, (210)Po/(210)Pb, in wolf samples of muscle, liver and blood were in the ranges 2-77, 9-56 and 2-54. Using a wet weight ratio of 3.8 the maximal absorbed dose from (210)Po to wolf liver was estimated to 3500 μGy per year. Compared to wolf, the ranges of (210)Po in liver samples were lower in lynx (range 22-211 Bq kg(-1) d.w.) and wolverine (range16-160 Bq kg(-1) d.w.). Concentration of (137)Cs in wolf samples of muscle, liver, kidney and blood were in the ranges 70-8410 Bq kg(-1) d.w., 36-4050 Bq kg(-1) d.w., 31-3453 Bq kg(-1) d.w. and 4-959 Bq kg(-1) d.w., respectively. (137)Cs in lynx muscle and liver samples were in the ranges 44-13393 Bq kg(-1) d.w. and 125-10260 Bq kg(-1) d.w. The corresponding values for (137)Cs in wolverine were 22-3405 Bq kg(-1) d.w. for liver and 53-4780 Bq kg(-1) d.w. for muscle. The maximal absorbed dose from (137)Cs to lynx was estimated to 3000 μGy per year. Copyright © 2014 Elsevier Ltd. All rights reserved.

Patterns of ovarian and luteal activity in captive and wild Canada lynx (Lynx canadensis)

Treesearch

Kerry V. Fanson; Nadja C. Wielebnowski; Tanya M. Shenk; Jennifer H. Vashon; John R. Squires; Jeffrey R. Lucas

2010-01-01

Canada lynx face some unique breeding restrictions, which may have implications for population viability and captive management. The goal of this study was to improve our understanding of basic reproductive physiology in Canada lynx. Using fecal hormone metabolite analysis, we established normative patterns of fecal estrogen (fE) and progestagen (fP)...

Ancient DNA evidence of Iberian lynx palaeoendemism

NASA Astrophysics Data System (ADS)

Rodríguez-Varela, Ricardo; Tagliacozzo, Antonio; Ureña, Irene; García, Nuria; Crégut-Bonnoure, Evelyne; Mannino, Marcello A.; Arsuaga, Juan Luis; Valdiosera, Cristina

2015-03-01

The Iberian lynx, endemic to the Iberian Peninsula, is the most threatened carnivore in Europe and the most endangered felid in the world. Widely distributed throughout Iberia during the Pleistocene and Holocene it is now confined to two small populations in southern Spain. Lynx species differentiation, based solely on morphological analysis from skeletal traits, is a difficult task and can potentially lead to misidentification. In order to verify whether Iberian lynx had a wider geographical distribution in the past, we successfully sequenced 152 base pairs (bp) of the cytochrome b gene and 183 bp of the mitochondrial control region in 20 Late Pleistocene and Holocene fossil remains of Lynx sp. from southern Europe. Our results confirm the presence of Iberian lynx outside the Iberian Peninsula demonstrating that this is a palaeoendemic species that had a wider distribution range in southern Europe during the Holocene and the Late Pleistocene. In addition, we documented the presence of both Palaearctic extant lynx species in the Arene Candide (north Italy) site during the Last Glacial Maximum.

Lynx mission concept study

NASA Astrophysics Data System (ADS)

Vikhlinin, Alexey

2018-01-01

Lynx is an observatory-class mission, featuring high throughput, exquisite angular resolution over a substantial field of view, and high spectral resolution for point and extended X-ray sources. The design requirements provide a tremendous leap in capabilities relative to missions such as Chandra and Athena. Lynx will observe the dawn of supermassive black holes through detection of very faint X-ray sources in the early universe and will reveal the "invisible drivers" of galaxy and structure formation through observations of hot, diffuse baryons in and around the galaxies. Lynx will enable breakthroughs across all of astrophysics, ranging from detailed understanding of stellar activity including effects on habitability of associated planets to population statistics of neutron stars and black holes in the Local Group galaxies, to earliest groups and clusters of galaxies, and to cosmology

Efficacy of lures and hair snares to detect lynx

Treesearch

Gregory W. McDaniel; Kevin S. McKelvey; John R. Squires; Leonard F. Ruggiero

2000-01-01

Resource managers lack an inexpensive and quantifiable method to detect lynx presence across large landscapes. We tested efficacy of a protocol based on hair snagging to detect presence of lynx (Lynx canadensis). We tested 2 key elements of the protocol: 1) a hair-snaring device and 2) commercial lures used to attract and elicit rubbing behavior in lynx. The...

Winter prey selection of Canada lynx in northwestern Montana

Treesearch

John R. Squires; Leonard F. Ruggiero

2007-01-01

The roles that diet and prey abundance play in habitat selection of Canada lynx (Lynx canadensis) in the contiguous United States is poorly understood. From 1998-2002, we back-tracked radiocollared lynx (6 F, 9 M) for a distance of 582 km and we located 86 kills in northwestern Montana, USA. Lynx preyed on 7 species that included blue grouse (Dendragapus...

Molecular identification of Taenia spp. In the Eurasian Lynx (Lynx lynx) from Finland

USDA-ARS?s Scientific Manuscript database

Cestodes of the genus Taenia are parasites of mammals, with mainly carnivores as definitive and herbivores as intermediate hosts. Various medium-sized cats, Lynx spp., are involved in the life cycles of several species of Taenia. The aim of the present study was to identify Taenia tapeworms in the E...

Habitat fragmentation and the persistence of lynx populations in Washington state

Treesearch

Gary M Koehler; Benjamin T. Maletzke; Jeff A. Von Kienast; Keith B. Aubry; Robert B. Wielgus; Robert H. Naney

2008-01-01

Lynx (Lynx canadensis) occur in the northern counties of Washington state, USA; however, current distribution and status of lynx in Washington are poorly understood. During winters 2002-2004 we snow-tracked lynx for 155 km within a 211-km2 area in northern Washington, to develop a model of lynx-habitat relationships that we...

Lynx: a database and knowledge extraction engine for integrative medicine.

PubMed

Sulakhe, Dinanath; Balasubramanian, Sandhya; Xie, Bingqing; Feng, Bo; Taylor, Andrew; Wang, Sheng; Berrocal, Eduardo; Dave, Utpal; Xu, Jinbo; Börnigen, Daniela; Gilliam, T Conrad; Maltsev, Natalia

2014-01-01

We have developed Lynx (http://lynx.ci.uchicago.edu)--a web-based database and a knowledge extraction engine, supporting annotation and analysis of experimental data and generation of weighted hypotheses on molecular mechanisms contributing to human phenotypes and disorders of interest. Its underlying knowledge base (LynxKB) integrates various classes of information from >35 public databases and private collections, as well as manually curated data from our group and collaborators. Lynx provides advanced search capabilities and a variety of algorithms for enrichment analysis and network-based gene prioritization to assist the user in extracting meaningful knowledge from LynxKB and experimental data, whereas its service-oriented architecture provides public access to LynxKB and its analytical tools via user-friendly web services and interfaces.

Lynx: a database and knowledge extraction engine for integrative medicine

PubMed Central

Sulakhe, Dinanath; Balasubramanian, Sandhya; Xie, Bingqing; Feng, Bo; Taylor, Andrew; Wang, Sheng; Berrocal, Eduardo; Dave, Utpal; Xu, Jinbo; Börnigen, Daniela; Gilliam, T. Conrad; Maltsev, Natalia

2014-01-01

We have developed Lynx (http://lynx.ci.uchicago.edu)—a web-based database and a knowledge extraction engine, supporting annotation and analysis of experimental data and generation of weighted hypotheses on molecular mechanisms contributing to human phenotypes and disorders of interest. Its underlying knowledge base (LynxKB) integrates various classes of information from >35 public databases and private collections, as well as manually curated data from our group and collaborators. Lynx provides advanced search capabilities and a variety of algorithms for enrichment analysis and network-based gene prioritization to assist the user in extracting meaningful knowledge from LynxKB and experimental data, whereas its service-oriented architecture provides public access to LynxKB and its analytical tools via user-friendly web services and interfaces. PMID:24270788

Large Impact of Eurasian Lynx Predation on Roe Deer Population Dynamics

PubMed Central

Andrén, Henrik; Liberg, Olof

2015-01-01

The effects of predation on ungulate populations depend on several factors. One of the most important factors is the proportion of predation that is additive or compensatory respectively to other mortality in the prey, i.e., the relative effect of top-down and bottom-up processes. We estimated Eurasian lynx (Lynx lynx) kill rate on roe deer (Capreolus capreolus) using radio-collared lynx. Kill rate was strongly affected by lynx social status. For males it was 4.85 ± 1.30 S.E. roe deer per 30 days, for females with kittens 6.23 ± 0.83 S.E. and for solitary females 2.71 ± 0.47 S.E. We found very weak support for effects of prey density (both for Type I (linear) and Type II (non-linear) functional responses) and of season (winter, summer) on lynx kill rate. Additionally, we analysed the growth rate in a roe deer population from 1985 to 2005 in an area, which lynx naturally re-colonized in 1996. The annual roe deer growth rate was lower after lynx re-colonized the study area, but it was also negatively influenced by roe deer density. Before lynx colonized the area roe deer growth rate was λ = 1.079 (± 0.061 S.E.), while after lynx re-colonization it was λ = 0.94 (± 0.051 S.E.). Thus, the growth rate in the roe deer population decreased by Δλ = 0.14 (± 0.080 S.E.) after lynx re-colonized the study area, which corresponded to the estimated lynx predation rate on roe deer (0.11 ± 0.042 S.E.), suggesting that lynx predation was mainly additive to other mortality in roe deer. To conclude, this study suggests that lynx predation together with density dependent factors both influence the roe deer population dynamics. Thus, both top-down and bottom-up processes operated at the same time in this predator-prey system. PMID:25806949

Hierarchical den selection of Canada lynx in western Montana

Treesearch

John R. Squires; Nicholas J. Decesare; Jay A. Kolbe; Leonard F. Ruggiero

2008-01-01

We studied den selection of Canada lynx (Lynx canadensis; hereafter lynx) at multiple ecological scales based on 57 dens from 19 females located in western Montana, USA, between 1999 and 2006. We considered 3 spatial scales in this analysis, including den site (11-m-radius circle surrounding dens), den area (100-m-radius circle), and den environ (1-...

Recent and historical distributions of Canada lynx in Maine and the Northeast

USGS Publications Warehouse

Hoving, C.L.; Joseph, R.A.; Krohn, W.B.

2003-01-01

The contiguous United States population of Canada lynx (Lynx canadensis Kerr) is listed as threatened under the federal Endangered Species Act. However, the historic distribution of lynx in the Northeast is poorly understood. We used museum records, bibliographic records, and interviews to reconstruct the past distribution of lynx in Maine, which is at the current southern limit of the species' distribution in the eastern United States. We found a total of 118 records, representing at least 509 lynx in Maine. Lynx were observed throughout Maine, 1833-1912, with the exception of coastal areas. After 1913, lynx were most common in the forests of western and northern Maine, and absent to rare along the coast, but had not returned to southern Maine by 1999. Thirty-nine kittens representing at least 21 litters were distributed throughout northern and western Maine, 1864-1999. Populations apparently fluctuated, and in some years 200-300 lynx were harvested in Maine. Prior to the 1900s, lynx were much more widely distributed in the Northeast, ranging from Pennsylvania north into Quebec. Because Canada lynx have had a long presence in northern New England, and at times were relatively common, this species merits serious consideration in conservation planning in this region.

Lynx web services for annotations and systems analysis of multi-gene disorders.

PubMed

Sulakhe, Dinanath; Taylor, Andrew; Balasubramanian, Sandhya; Feng, Bo; Xie, Bingqing; Börnigen, Daniela; Dave, Utpal J; Foster, Ian T; Gilliam, T Conrad; Maltsev, Natalia

2014-07-01

Lynx is a web-based integrated systems biology platform that supports annotation and analysis of experimental data and generation of weighted hypotheses on molecular mechanisms contributing to human phenotypes and disorders of interest. Lynx has integrated multiple classes of biomedical data (genomic, proteomic, pathways, phenotypic, toxicogenomic, contextual and others) from various public databases as well as manually curated data from our group and collaborators (LynxKB). Lynx provides tools for gene list enrichment analysis using multiple functional annotations and network-based gene prioritization. Lynx provides access to the integrated database and the analytical tools via REST based Web Services (http://lynx.ci.uchicago.edu/webservices.html). This comprises data retrieval services for specific functional annotations, services to search across the complete LynxKB (powered by Lucene), and services to access the analytical tools built within the Lynx platform. © The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research.

Theoretical insights into the population viability of lynx [Chapter 2

Treesearch

Kevin S. McKelvey; Steven W. Buskirk; Charles J. Krebs

2000-01-01

We discuss ecological theory and population models pertinent to the population biology of southern lynx. Fragmented forest cover types, high vagility of lynx, and linkages in population dynamics suggest that lynx in the contiguous United States are arranged as metapopulations. Metapopulation stability depends on not only habitat quality but also dispersal...

Habitat conditions associated with lynx hunting behavior during winter in northern Washington

Treesearch

Benjamin T. Maletzke; Gary M. Koehler; Robert B. Wielgus; Keith B. Aubry; Marc A. Evans

2008-01-01

Effectively managing habitat for threatened populations of Canada lynx (Lynx canadensis) requires knowledge of habitat conditions that provide for the ecological needs of lynx. We snow-tracked lynx to identify habitat conditions associated with hunting behavior and predation during winters of 2002-2003 and 2003-2004 in the northern Cascade Range in...

The effect of snowmobile trails on coyote movements within lynx home ranges

Treesearch

Jay A. Kolbe; John R. Squires; Daniel H. Pletscher; Leonard F. Ruggiero

2007-01-01

Coyotes (Canis latrans) and Canada lynx (Lynx canadensis) are sympatric throughout much of the lynx’s southern range. Researchers and managers have suggested that the presence of compacted snowmobile trails may allow coyotes to access lynx habitat from which they were previously excluded by deep, unconsolidated snow. This could then allow coyotes to more...

Performance analysis and kernel size study of the Lynx real-time operating system

NASA Technical Reports Server (NTRS)

Liu, Yuan-Kwei; Gibson, James S.; Fernquist, Alan R.

1993-01-01

This paper analyzes the Lynx real-time operating system (LynxOS), which has been selected as the operating system for the Space Station Freedom Data Management System (DMS). The features of LynxOS are compared to other Unix-based operating system (OS). The tools for measuring the performance of LynxOS, which include a high-speed digital timer/counter board, a device driver program, and an application program, are analyzed. The timings for interrupt response, process creation and deletion, threads, semaphores, shared memory, and signals are measured. The memory size of the DMS Embedded Data Processor (EDP) is limited. Besides, virtual memory is not suitable for real-time applications because page swap timing may not be deterministic. Therefore, the DMS software, including LynxOS, has to fit in the main memory of an EDP. To reduce the LynxOS kernel size, the following steps are taken: analyzing the factors that influence the kernel size; identifying the modules of LynxOS that may not be needed in an EDP; adjusting the system parameters of LynxOS; reconfiguring the device drivers used in the LynxOS; and analyzing the symbol table. The reductions in kernel disk size, kernel memory size and total kernel size reduction from each step mentioned above are listed and analyzed.

Lynx1 Limits Dendritic Spine Turnover in the Adult Visual Cortex

PubMed Central

Sajo, Mari

2016-01-01

Dendritic spine turnover becomes limited in the adult cerebral cortex. Identification of specific aspects of spine dynamics that can be unmasked in adulthood and its regulatory molecular mechanisms could provide novel therapeutic targets for inducing plasticity at both the functional and structural levels for robust recovery from brain disorders and injuries in adults. Lynx1, an endogenous inhibitor of nicotinic acetylcholine receptors, was previously shown to increase its expression in adulthood and thus to limit functional ocular dominance plasticity in adult primary visual cortex (V1). However, the role of this “brake” on spine dynamics is not known. We examined the contribution of Lynx1 on dendritic spine turnover before and after monocular deprivation (MD) in adult V1 with chronic in vivo imaging using two-photon microscopy and determined the spine turnover rate of apical dendrites of layer 5 (L5) and L2/3 pyramidal neurons in adult V1 of Lynx1 knock-out (KO) mice. We found that the deletion of Lynx1 doubled the baseline spine turnover rate, suggesting that the spine dynamics in the adult cortex is actively limited by the presence of Lynx1. After MD, adult Lynx1-KO mice selectively exhibit higher rate of spine loss with no difference in gain rate in L5 neurons compared with control wild-type counterparts, revealing a key signature of spine dynamics associated with robust functional plasticity in adult V1. Overall, Lynx1 could be a promising therapeutic target to induce not only functional, but also structural plasticity at the level of spine dynamics in the adult brain. SIGNIFICANCE STATEMENT Dendritic spine turnover becomes limited in the adult cortex. In mouse visual cortex, a premier model of experience-dependent plasticity, we found that the deletion of Lynx1, a nicotinic “brake” for functional plasticity, doubled the baseline spine turnover in adulthood, suggesting that the spine dynamics in the adult cortex is actively limited by Lynx1. After

History and distribution of lynx in the contiguous United States [Chapter 8

Treesearch

Kevin S. McKelvey

2000-01-01

Using written accounts, trapping records, and spatially referenced occurrence data, the authors reconstructed the history and distribution of lynx in the contiguous United States from the 1800s to the present. Records show lynx occurrence in 24 states. Data over broad scales of space and time show lynx distribution...

Comparative ecology of lynx in North America [Chapter 14

Treesearch

Steven W. Buskirk; Leonard F. Ruggiero; Keith B. Aubry; Dean E. Pearson; John R. Squires; Kevin S. McKelvey

2000-01-01

: Lynx occur across a large geographic area, but have only been studied in a few locations, and this has led to extrapolation of understandings into areas with very divergent ecologies. We discuss ecological differences across the range of lynx, contrasting the patterns of climate, vegetation, disturbance dynamics and succession, and predator/prey...

Predicting the effects of forest management on lynx populations

Treesearch

John R. Squires

2008-01-01

Lynx are quintessential snowshoe hare predators with morphological adaptations such as large paws. This species depends on boreal forests, so the listing of Canada Lynx as a Threatened species is a major conservation issue to forest managers. The U.S. Fish and Wildlife Service stated that human alteration of forest abundance, composition, and connectivity was the most...

Acquired antibiotic resistance among wild animals: the case of Iberian Lynx (Lynx pardinus).

PubMed

Sousa, Margarida; Gonçalves, Alexandre; Silva, Nuno; Serra, Rodrigo; Alcaide, Eva; Zorrilla, Irene; Torres, Carmen; Caniça, Manuela; Igrejas, Gilberto; Poeta, Patrícia

2014-01-01

The selective pressure generated by the clinical misuse of antibiotics has been the major driving force leading to the emergence of antibiotic resistance among bacteria. Antibiotics or even resistant bacteria are released into the environment and contaminate the surrounding areas. Human and animal populations in contact with these sources are able to become reservoirs of these resistant organisms. Then, due to the convergence between habitats, the contact of wild animals with other animals, humans, or human sources is now more common and this leads to an increase in the exchange of resistance determinants between their microbiota. Indeed, it seems that wildlife populations living in closer proximity to humans have higher levels of antibiotic resistance. Now, the Iberian Lynx (Lynx pardinus) is a part of this issue, being suggested as natural reservoir of acquired resistant bacteria. The emerging public health concern regarding microbial resistance to antibiotics is becoming true: the bacteria are evolving and are now affecting unintentional hosts.

NMR structure and action on nicotinic acetylcholine receptors of water-soluble domain of human LYNX1.

PubMed

Lyukmanova, Ekaterina N; Shenkarev, Zakhar O; Shulepko, Mikhail A; Mineev, Konstantin S; D'Hoedt, Dieter; Kasheverov, Igor E; Filkin, Sergey Yu; Krivolapova, Alexandra P; Janickova, Helena; Dolezal, Vladimir; Dolgikh, Dmitry A; Arseniev, Alexander S; Bertrand, Daniel; Tsetlin, Victor I; Kirpichnikov, Mikhail P

2011-03-25

Discovery of proteins expressed in the central nervous system sharing the three-finger structure with snake α-neurotoxins provoked much interest to their role in brain functions. Prototoxin LYNX1, having homology both to Ly6 proteins and three-finger neurotoxins, is the first identified member of this family membrane-tethered by a GPI anchor, which considerably complicates in vitro studies. We report for the first time the NMR spatial structure for the water-soluble domain of human LYNX1 lacking a GPI anchor (ws-LYNX1) and its concentration-dependent activity on nicotinic acetylcholine receptors (nAChRs). At 5-30 μM, ws-LYNX1 competed with (125)I-α-bungarotoxin for binding to the acetylcholine-binding proteins (AChBPs) and to Torpedo nAChR. Exposure of Xenopus oocytes expressing α7 nAChRs to 1 μM ws-LYNX1 enhanced the response to acetylcholine, but no effect was detected on α4β2 and α3β2 nAChRs. Increasing ws-LYNX1 concentration to 10 μM caused a modest inhibition of these three nAChR subtypes. A common feature for ws-LYNX1 and LYNX1 is a decrease of nAChR sensitivity to high concentrations of acetylcholine. NMR and functional analysis both demonstrate that ws-LYNX1 is an appropriate model to shed light on the mechanism of LYNX1 action. Computer modeling, based on ws-LYNX1 NMR structure and AChBP x-ray structure, revealed a possible mode of ws-LYNX1 binding.

Spatial ecology and movement of reintroduced Canada lynx

USGS Publications Warehouse

Buderman, Frances E.; Hooten, Mevin B.; Ivan, Jacob S.; Shenk, Tanya

2017-01-01

Understanding movement behavior and identifying areas of landscape connectivity is critical for the conservation of many species. However, collecting fine‐scale movement data can be prohibitively time consuming and costly, especially for rare or endangered species, whereas existing data sets may provide the best available information on animal movement. Contemporary movement models may not be an option for modeling existing data due to low temporal resolution and large or unusual error structures, but inference can still be obtained using a functional movement modeling approach. We use a functional movement model to perform a population‐level analysis of telemetry data collected during the reintroduction of Canada lynx to Colorado. Little is known about southern lynx populations compared to those in Canada and Alaska, and inference is often limited to a few individuals due to their low densities. Our analysis of a population of Canada lynx fills significant gaps in the knowledge of Canada lynx behavior at the southern edge of its historical range. We analyzed functions of individual‐level movement paths, such as speed, residence time, and tortuosity, and identified a region of connectivity that extended north from the San Juan Mountains, along the continental divide, and terminated in Wyoming at the northern edge of the Southern Rocky Mountains. Individuals were able to traverse large distances across non‐boreal habitat, including exploratory movements to the Greater Yellowstone area and beyond. We found evidence for an effect of seasonality and breeding status on many of the movement quantities and documented a potential reintroduction effect. Our findings provide the first analysis of Canada lynx movement in Colorado and substantially augment the information available for conservation and management decisions. The functional movement framework can be extended to other species and demonstrates that information on movement behavior can be obtained using

Lynx home range and movements in Montana and Wyoming: Preliminary results [Chapter 11

Treesearch

John R. Squires; Tom Laurion

2000-01-01

Preliminary telemetry data suggest that lynx in Montana and Wyoming have large home ranges; this result supports the Koehler and Aubry (1994) contention that lynx from southern lynx populations have large spatial-use areas. Annual home ranges of males were larger than females. Straight-line, daily travel distance averaged 2 to 4 km, which is similar to northern...

Ecology of Canada lynx in southern boreal forests [Chapter 13

Treesearch

Keith B. Aubry; Gary M. Koehler; John R. Squires

2000-01-01

Canada lynx occur throughout boreal forests of North America, but ecological conditions in southern regions differ in many respects from those in Canada and Alaska. To evaluate the extent to which lynx ecology and population biology may differ between these regions, we review existing information from southern boreal forests and compare our findings to...

Missing lynx and trophic cascades in food webs: A reply to Ripple et al.

Treesearch

John R. Squires; Nicholas J. DeCesare; Mark Hebblewhite; Joel Berger

2012-01-01

Ripple et al. (2011) proposed a hypothesis that the recovery of gray wolves (Canis lupus) may positively affect the viability of threatened Canada lynx (Lynx canadensis) populations in the contiguous United States through indirect species interactions. Ripple et al. (2011) proposed 2 key trophic linkages connecting wolf restoration with lynx recovery. First, recovering...

American marten, fisher, lynx, and wolverine: survey methods for their detection

Treesearch

William J. Zielinski; Thomas E. Kucera

1995-01-01

The status of the American marten (Martes americana), fisher (Martes pennanti), lynx (Lynx canadensis), and wolverine (Gulo gulo) is of increasing concern to managers and conservationists in much of the western United States. Because these species are protected throughout much of their range in...

The scientific basis for lynx conservation: Qualified insights [Chapter 16

Treesearch

Keith B. Aubry; Steven W. Buskirk; Gary M. Koehler; Charles J. Krebs; Kevin S. McKelvey; John R. Squires

2000-01-01

The information presented in this chapter is based on (1) extant knowledge of lynx ecology, (2) the pertinence of this knowledge to lynx conservation in the contiguous United States, (3) the ecological concepts discussed in the first section of this book, and (4) the collective interpretation and judgment of the authors. We have chosen the term "qualified...

Seasonal resource selection of Canada lynx in managed forests of the northern Rocky Mountains

Treesearch

John R. Squires; Nicholas J. DeCesare; Jay A. Kolbe; Leonard F. Ruggiero

2010-01-01

We investigated seasonal patterns in resource selection of Canada lynx (Lynx canadensis) in the northern Rockies (western MT, USA) from 1998 to 2002 based on backtracking in winter (577 km; 10 M, 7 F) and radiotelemetry (630 locations; 16 M, 11 F) in summer. During winter, lynx preferentially foraged in mature, multilayer forests with Engelmann spruce (Picea...

Defining space use and movements of Canada lynx with global positioning system telemetry

USGS Publications Warehouse

Burdett, C.L.; Moen, R.A.; Niemi, G.J.; Mech, L.D.

2007-01-01

Space use and movements of Canada lynx (Lynx canadensis) are difficult to study with very-high-frequency radiocollars. We deployed global positioning system (GPS) collars on 11 lynx in Minnesota to study their seasonal space-use patterns. We estimated home ranges with minimum-convex-polygon and fixed-kernel methods and estimated core areas with area/probability curves. Fixed-kernel home ranges of males (range = 29-522 km2) were significantly larger than those of females (range = 5-95 km2) annually and during the denning season. Some male lynx increased movements during March, the month most influenced by breeding activity. Lynx core areas were predicted by the 60% fixed-kernel isopleth in most seasons. The mean core-area size of males (range = 6-190 km2) was significantly larger than that of females (range = 1-19 km2) annually and during denning. Most female lynx were reproductive animals with reduced movements, whereas males often ranged widely between Minnesota and Ontario. Sensitivity analyses examining the effect of location frequency on home-range size suggest that the home-range sizes of breeding females are less sensitive to sample size than those of males. Longer periods between locations decreased home-range and core-area overlap relative to the home range estimated from daily locations. GPS collars improve our understanding of space use and movements by lynx by increasing the spatial extent and temporal frequency of monitoring and allowing home ranges to be estimated over short periods that are relevant to life-history characteristics. ?? 2007 American Society of Mammalogists.

Age, sex, reproduction, and spatial organization of lynxes colonizing northeastern Minnesota

USGS Publications Warehouse

Mech, L.D.

1980-01-01

From 1972 through 1978, lynxes (Felis lynx) emigrating from Canada were studied in northeastern Minnesota. Fourteen individuals were radio-tracked, 8 wefe ear-tagged, and 49 carcasses were examined. Sex ratios of the samples were equal during the first years of the study, but females predominated later. At least half of the radiotagged lynxes were killed by humans; no natural mortality was detected. Home range sizes ranged from 51 to 122 km2 for females and 145 to 243 km2 for males, up to 10 times the sizes of those reported by other workers. Ranges of females tended to overlap. Males and females appeared to be segregated in the population.

Ecology and conservation of lynx in the United States [Preface

Treesearch

Leonard F. Ruggiero

2000-01-01

When we began the task of elucidating the scientific basis for lynx conservation in June 1998, I had little idea how constrained our time would be. The request to do this job came from a consortium of federal land management agencies in response to the U.S. Fish and Wildlife Service’s "proposed rule" to list the Canada lynx as a threatened or endangered...

PE-46 The Design of the Lynx X-Ray Microcalorimeter

NASA Technical Reports Server (NTRS)

Bandler, Simon; Dipirro, Michael; Eckart, Megan; Sakai, Kazuhiro; Smith, Stephen; Yoon, Wonsik; Bennett, Douglas; Kotsubo, Vincent; Mates, Benjamin; Swetz, Daneil;

Small passenger car transmission test: Mercury Lynx ATX transmission

NASA Technical Reports Server (NTRS)

Bujold, M. P.

1981-01-01

The testing of a Mercury Lynx automatic transmission is reported. The transmission was tested in accordance with a passenger car automatic transmission test code (SAE J65lb) which required drive performance, coast performance, and no load test conditions. Under these conditions, the transmission attained maximum efficiencies in the mid-ninety percent range both for drive performance test and coast performance tests. The torque, speed, and efficiency curves are presented, which provide the complete performance characteristics for the Mercury Lynx automatic transmission.

Patterns of Lynx Predation at the Interface between Protected Areas and Multi-Use Landscapes in Central Europe

PubMed Central

Belotti, Elisa; Weder, Nicole; Bufka, Luděk; Kaldhusdal, Arne; Küchenhoff, Helmut; Seibold, Heidi; Woelfing, Benno; Heurich, Marco

2015-01-01

In Central Europe, protected areas are too small to ensure survival of populations of large carnivores. In the surrounding areas, these species are often persecuted due to competition with game hunters. Therefore, understanding how predation intensity varies spatio-temporally across areas with different levels of protection is fundamental. We investigated the predation patterns of Eurasian lynx (Lynx lynx) on roe deer (Capreolus capreolus) and red deer (Cervus elaphus) in both protected areas and multi-use landscapes of the Bohemian Forest Ecosystem. Based on 359 roe and red deer killed by 10 GPS-collared lynx, we calculated the species-specific annual kill rates and tested for effects of season and lynx age, sex and reproductive status. Because roe and red deer in the study area concentrate in unprotected lowlands during winter, we modeled spatial distribution of kills separately for summer and winter and calculated-the probability of a deer killed by lynx and-the expected number of kills for areas with different levels of protection. Significantly more roe deer (46.05–74.71/year/individual lynx) were killed than red deer (1.57–9.63/year/individual lynx), more deer were killed in winter than in summer, and lynx family groups had higher annual kill rates than adult male, single adult female and subadult female lynx. In winter the probability of a deer killed and the expected number of kills were higher outside the most protected part of the study area than inside; in summer, this probability did not differ between areas, and the expected number of kills was slightly larger inside than outside the most protected part of the study area. This indicates that the intensity of lynx predation in the unprotected part of the Bohemian Forest Ecosystem increases in winter, thus mitigation of conflicts in these areas should be included as a priority in the lynx conservation strategy. PMID:26379142

Density of wild prey modulates lynx kill rates on free-ranging domestic sheep.

PubMed

Odden, John; Nilsen, Erlend B; Linnell, John D C

2013-01-01

Understanding the factors shaping the dynamics of carnivore-livestock conflicts is vital to facilitate large carnivore conservation in multi-use landscapes. We investigated how the density of their main wild prey, roe deer Capreolus capreolus, modulates individual Eurasian lynx Lynx lynx kill rates on free-ranging domestic sheep Ovis aries across a range of sheep and roe deer densities. Lynx kill rates on free-ranging domestic sheep were collected in south-eastern Norway from 1995 to 2011 along a gradient of different livestock and wild prey densities using VHF and GPS telemetry. We used zero-inflated negative binomial (ZINB) models including lynx sex, sheep density and an index of roe deer density as explanatory variables to model observed kill rates on sheep, and ranked the models based on their AICc values. The model including the effects of lynx sex and sheep density in the zero-inflation model and the effect of lynx sex and roe deer density in the negative binomial part received most support. Irrespective of sheep density and sex, we found the lowest sheep kill rates in areas with high densities of roe deer. As roe deer density decreased, males killed sheep at higher rates, and this pattern held for both high and low sheep densities. Similarly, females killed sheep at higher rates in areas with high densities of sheep and low densities of roe deer. However, when sheep densities were low females rarely killed sheep irrespective of roe deer density. Our quantification of depredation rates can be the first step towards establishing fairer compensation systems based on more accurate and area specific estimation of losses. This study demonstrates how we can use ecological theory to predict where losses of sheep will be greatest, and can be used to identify areas where mitigation measures are most likely to be needed.

Density of Wild Prey Modulates Lynx Kill Rates on Free-Ranging Domestic Sheep

PubMed Central

Odden, John; Nilsen, Erlend B.; Linnell, John D. C.

2013-01-01

Understanding the factors shaping the dynamics of carnivore–livestock conflicts is vital to facilitate large carnivore conservation in multi-use landscapes. We investigated how the density of their main wild prey, roe deer Capreolus capreolus, modulates individual Eurasian lynx Lynx lynx kill rates on free-ranging domestic sheep Ovis aries across a range of sheep and roe deer densities. Lynx kill rates on free-ranging domestic sheep were collected in south-eastern Norway from 1995 to 2011 along a gradient of different livestock and wild prey densities using VHF and GPS telemetry. We used zero-inflated negative binomial (ZINB) models including lynx sex, sheep density and an index of roe deer density as explanatory variables to model observed kill rates on sheep, and ranked the models based on their AICc values. The model including the effects of lynx sex and sheep density in the zero-inflation model and the effect of lynx sex and roe deer density in the negative binomial part received most support. Irrespective of sheep density and sex, we found the lowest sheep kill rates in areas with high densities of roe deer. As roe deer density decreased, males killed sheep at higher rates, and this pattern held for both high and low sheep densities. Similarly, females killed sheep at higher rates in areas with high densities of sheep and low densities of roe deer. However, when sheep densities were low females rarely killed sheep irrespective of roe deer density. Our quantification of depredation rates can be the first step towards establishing fairer compensation systems based on more accurate and area specific estimation of losses. This study demonstrates how we can use ecological theory to predict where losses of sheep will be greatest, and can be used to identify areas where mitigation measures are most likely to be needed. PMID:24278123

Canada lynx habitat and topographic use patterns in north central Washington: A reanalysis [Chapter 10

Treesearch

Kevin S. McKelvey; Yvette K. Ortega; Gary M. Koehler; Keith B. Aubry; J. David. Brittell

2000-01-01

We examined habitat selection by 22 lynx on the Okanogan National Forest in Washington, analyzing radio-telemetry data collected during two previous studies, 1981 through 1988. At a coarse scale, lynx showed little use of areas below 1,400 m or above 2,150 m. Within the zone between 1,400 and 2,150 m, lynx used areas with slopes <10% and moderate stream...

The ly-6 protein, lynx1, is an endogenous inhibitor of nicotinic signaling in airway epithelium.

PubMed

Fu, Xiao Wen; Rekow, Stephen S; Spindel, Eliot R

2012-10-15

Our laboratory has previously reported that bronchial epithelial cells (BEC) express a regulatory cascade of classic neurotransmitters and receptors that communicate in an almost neuronal-like manner to achieve physiological regulation. In this paper we show that the similarity between neurotransmitter signaling in neurons and BEC extends to the level of transmitter receptor allosteric modulators. Lynx1 is a member of the ly-6/three-finger superfamily of proteins, many of which modulate receptor signaling activity. Lynx1 specifically has been shown to modulate nicotinic acetylcholine receptor (nAChR) function in neurons by altering receptor sensitivity and desensitization. We now report that lynx1 forms a complex with α7 nAChR in BEC and serves to negatively regulate α7 downstream signaling events. Treatment of primary cultures of BEC with nicotine increased levels of nAChR subunits and that increase was potentiated by lynx1 knockdown. Lynx1 knockdown also potentiated the nicotine-induced increase in GABA(A) receptors (GABA(A)R) and MUC5AC mRNA expression, and that effect was blocked by α7 antagonists and α7 knockdown. In parallel with the increases in nAChR, GABA(A)R, and mucin mRNA levels, lynx1 knockdown also increased levels of p-Src. Consistent with this, inhibition of Src signaling blocked the ability of the lynx1 knockdown to increase basal and nicotine-stimulated GABA(A)R and mucin mRNA expression. Thus lynx1 appears to act as a negative modulator of α7 nAChR-induced events by inhibiting Src activation. This suggests that lynx1 agonists or mimetics are a potentially important therapeutic target to develop new therapies for smoking-related diseases characterized by increased mucin expression.

Den use and activity patterns in female Canada lynx (Lynx Canadensis) in the northern Rocky Mountains

Treesearch

Lucretia E. Olson; John R. Squires; Nicholas J. DeCesare; Jay A. Kolbe

2011-01-01

Knowledge of female behavior while rearing young can have important implications for species conservation. We located dens and analyzed activity (defined as movement between consecutive GPS locations) for nine female lynx with kittens in the northcentral Rocky Mountains in 2005 and 2007. We used GPS tracking collars to quantify the percentage of time a female spent...

Adapted conservation measures are required to save the Iberian lynx in a changing climate

NASA Astrophysics Data System (ADS)

Fordham, D. A.; Akçakaya, H. R.; Brook, B. W.; Rodríguez, A.; Alves, P. C.; Civantos, E.; Triviño, M.; Watts, M. J.; Araújo, M. B.

2013-10-01

The Iberian lynx (Lynx pardinus) has suffered severe population declines in the twentieth century and is now on the brink of extinction. Climate change could further threaten the survival of the species, but its forecast effects are being neglected in recovery plans. Quantitative estimates of extinction risk under climate change have so far mostly relied on inferences from correlative projections of species' habitat shifts. Here we use ecological niche models coupled to metapopulation simulations with source-sink dynamics to directly investigate the combined effects of climate change, prey availability and management intervention on the persistence of the Iberian lynx. Our approach is unique in that it explicitly models dynamic bi-trophic species interactions in a climate change setting. We show that anticipated climate change will rapidly and severely decrease lynx abundance and probably lead to its extinction in the wild within 50 years, even with strong global efforts to mitigate greenhouse gas emissions. In stark contrast, we also show that a carefully planned reintroduction programme, accounting for the effects of climate change, prey abundance and habitat connectivity, could avert extinction of the lynx this century. Our results demonstrate, for the first time, why considering prey availability, climate change and their interaction in models is important when designing policies to prevent future biodiversity loss.

Latest Early Pleistocene remains of Lynx pardinus (Carnivora, Felidae) from the Iberian Peninsula: Taxonomy and evolutionary implications

NASA Astrophysics Data System (ADS)

Boscaini, Alberto; Alba, David M.; Beltrán, Juan F.; Moyà-Solà, Salvador; Madurell-Malapeira, Joan

2016-07-01

The Iberian lynx (Lynx pardinus) is a critically endangered felid that, during the last fifty years, has been subject to an intensive conservation program in an attempt to save it from extinction. This species is first recorded at ca. 1.7-1.6 Ma (late Villafranchian, late Early Pleistocene) in NE Iberian Peninsula, roughly coinciding with the large faunal turnover that occurred around the middle to late Villafranchian boundary. Here we describe the largest collection of L. pardinus remains available to date from the Iberian late Early Pleistocene (Epivillafranchian), including localities from the Vallparadís Section (Vallès-Penedès Basin, NE Iberian Peninsula) and Cueva Victoria (Cartagena, SE Iberian Peninsula). The morphology and biometry of the studied material attests to the widespread occurrence of L. pardinus in the Mediterranean coast of the Iberian Peninsula since the latest Early Pleistocene, i.e., about 0.5 million years earlier than it was generally accepted (i.e., at the beginning of the Middle Pleistocene). Based on the features observed in the large sample studied in this paper, we conclude that Lynx spelaeus is a junior synonym of L. pardinus and further propose to assign all the Epivillafranchian and younger fossil lynxes from SW Europe to the extant species L. pardinus. Due to the arrival of the Eurasian lynx (Lynx lynx) into Europe at the beginning of the Late Pleistocene, the attribution of specimens younger than MIS 5e to either this species or L. pardinus solely on morphological grounds has proven equivocal. Here we discuss the main diagnostic features of both species of European lynxes and further review their evolutionary history and paleobiogeography throughout the Pleistocene.

Movements of a male Canada lynx crossing the greater Yellowstone Area, including highways

Treesearch

John R. Squires; Robert Oakleaf

2005-01-01

From 1999-2001, a male Canada lynx engaged in yearly exploratory movements across the greater Yellowstone area including the Teton Wilderness Area and Yellowstone National Park. For three consecutive summers, the lynx traversed a similar path in a northwesterly direction from the animal’s home range in the Wyoming Range near Big Piney, Wyoming, to as far as...

Germ cell survival and differentiation after xenotransplantation of testis tissue from three endangered species: Iberian lynx (Lynx pardinus), Cuvier's gazelle (Gazella cuvieri) and Mohor gazelle (G. dama mhorr).

PubMed

Arregui, Lucía; Dobrinski, Ina; Roldan, Eduardo R S

2014-01-01

The use of assisted reproductive techniques for endangered species is a major goal for conservation. One of these techniques, testis tissue xenografting, allows for the development of spermatozoa from animals that die before reaching sexual maturity. To assess the potential use of this technique with endangered species, testis tissue from six Iberian lynxes (one fetus, two perinatal cubs, two 6-month-old and one 2-year-old lynx), two Cuvier's gazelle fetuses and one 8-month-old Mohor gazelle were transplanted ectopically into nude mice. Tissue from the lynx fetus, perinatal cubs and 2-year-old donors degenerated, whereas spermatogonia were present in 15% of seminiferous tubules more than 70 weeks after grafting in transplanted testis tissue from 6-month-old donors. Seminal vesicle weights (indicative of testosterone production) increased over time in mice transplanted with tissue from 6-month-old lynxes. Progression of spermatogenesis was observed in xenografts from gazelles and was donor age dependent. Tissue from Cuvier's gazelle fetuses contained spermatocytes 40 weeks after grafting. Finally, round spermatids were found 28 weeks after transplantation in grafts from the 8-month-old Mohor gazelle. This is the first time that xenotransplantation of testicular tissue has been performed with an endangered felid and the first successful xenotransplantation in an endangered species. Our results open important options for the preservation of biological diversity.

Fear or food - abundance of red fox in relation to occurrence of lynx and wolf.

PubMed

Wikenros, Camilla; Aronsson, Malin; Liberg, Olof; Jarnemo, Anders; Hansson, Jessica; Wallgren, Märtha; Sand, Håkan; Bergström, Roger

2017-08-22

Apex predators may affect mesopredators through intraguild predation and/or supply of carrion from their prey, causing a trade-off between avoidance and attractiveness. We used wildlife triangle snow-tracking data to investigate the abundance of red fox (Vulpes vulpes) in relation to lynx (Lynx lynx) and wolf (Canis lupus) occurrence as well as land composition and vole (Microtus spp.) density. Data from the Swedish wolf-monitoring system and VHF/GPS-collared wolves were used to study the effect of wolf pack size and time since wolf territory establishment on fox abundance. Bottom-up processes were more influential than top-down effects as the proportion of arable land was the key indicator of fox abundance at the landscape level. At this spatial scale, there was no effect of wolf abundance on fox abundance, whereas lynx abundance had a positive effect. In contrast, at the wolf territory level there was a negative effect of wolves on fox abundance when including detailed information of pack size and time since territory establishment, whereas there was no effect of lynx abundance. This study shows that different apex predator species may affect mesopredator abundance in different ways and that the results may be dependent on the spatiotemporal scale and resolution of the data.

The scientific basis for lynx conservation: Can we get there from here? [Chapter 18

Treesearch

Leonard F. Ruggiero; Keith B. Aubry; Steven W. Buskirk; Gary M. Koehler; Charles J. Krebs; Kevin S. McKelvey; John R. Squires

2000-01-01

As we emphasized in the Preface, this book was written under very unusual circumstances. We began the book shortly after the lynx was proposed for listing as threatened or endangered under the Endangered Species Act (ESA). Our purpose was to elucidate the scientific basis for conserving lynx for use in listing deliberations and in establishing land management policy,...

Habitat Selection and Risk of Predation: Re-colonization by Lynx had Limited Impact on Habitat Selection by Roe Deer

PubMed Central

Samelius, Gustaf; Andrén, Henrik; Kjellander, Petter; Liberg, Olof

2013-01-01

Risk of predation is an evolutionary force that affects behaviors of virtually all animals. In this study, we examined how habitat selection by roe deer was affected by risk of predation by Eurasian lynx – the main predator of roe deer in Scandinavia. Specifically, we compared how habitat selection by roe deer varied (1) before and after lynx re-established in the study area and (2) in relation to habitat-specific risk of predation by lynx. All analyses were conducted at the spatial and temporal scales of home ranges and seasons. We did not find any evidence that roe deer avoided habitats in which the risk of predation by lynx was greatest and information-theoretic model selection showed that re-colonization by lynx had limited impact on habitat selection by roe deer despite lynx predation causing 65% of known mortalities after lynx re-colonized the area. Instead we found that habitat selection decreased when habitat availability increased for 2 of 5 habitat types (a pattern referred to as functional response in habitat selection). Limited impact of re-colonization by lynx on habitat selection by roe deer in this study differs from elk in North America altering both daily and seasonal patterns in habitat selection at the spatial scales of habitat patches and home ranges when wolves were reintroduced to Yellowstone National Park. Our study thus provides further evidence of the complexity by which animals respond to risk of predation and suggest that it may vary between ecosystems and predator-prey constellations. PMID:24069419

Habitat selection and risk of predation: re-colonization by lynx had limited impact on habitat selection by roe deer.

PubMed

Samelius, Gustaf; Andrén, Henrik; Kjellander, Petter; Liberg, Olof

2013-01-01

Risk of predation is an evolutionary force that affects behaviors of virtually all animals. In this study, we examined how habitat selection by roe deer was affected by risk of predation by Eurasian lynx - the main predator of roe deer in Scandinavia. Specifically, we compared how habitat selection by roe deer varied (1) before and after lynx re-established in the study area and (2) in relation to habitat-specific risk of predation by lynx. All analyses were conducted at the spatial and temporal scales of home ranges and seasons. We did not find any evidence that roe deer avoided habitats in which the risk of predation by lynx was greatest and information-theoretic model selection showed that re-colonization by lynx had limited impact on habitat selection by roe deer despite lynx predation causing 65% of known mortalities after lynx re-colonized the area. Instead we found that habitat selection decreased when habitat availability increased for 2 of 5 habitat types (a pattern referred to as functional response in habitat selection). Limited impact of re-colonization by lynx on habitat selection by roe deer in this study differs from elk in North America altering both daily and seasonal patterns in habitat selection at the spatial scales of habitat patches and home ranges when wolves were reintroduced to Yellowstone National Park. Our study thus provides further evidence of the complexity by which animals respond to risk of predation and suggest that it may vary between ecosystems and predator-prey constellations.

The return of the Iberian lynx to Portugal: local voices.

PubMed

Lopes-Fernandes, Margarida; Espírito-Santo, Clara; Frazão-Moreira, Amélia

2018-01-11

Ethnographic research can help to establish dialog between conservationists and local people in reintroduction areas. Considering that predator reintroductions may cause local resistance, we assessed attitudes of different key actor profiles to the return of the Iberian lynx (Lynx pardinus) to Portugal before reintroduction started in 2015. We aimed to characterize a social context from an ethnoecological perspective, including factors such as local knowledge, perceptions, emotions, and opinions. We conducted semi-structured interviews (n = 131) in three different protected areas and observed practices and public meetings in order to describe reintroduction contestation, emotional involvement with the species, and local perceptions about conservation. Detailed content data analysis was undertaken and an open-ended codification of citations was performed with the support of ATLAS.ti. Besides the qualitative analyses, we further explored statistic associations between knowledge and opinions and compared different geographical areas and hunters with non-hunters among key actors. Local ecological knowledge encompassed the lynx but was not shared by the whole community. Both similarities and differences between local and scientific knowledge about the lynx were found. The discrepancies with scientific findings were not necessarily a predictor of negative attitudes towards reintroduction. Contestation issues around reintroduction differ between geographical areas but did not hinder an emotional attachment to the species and its identification as a territory emblem. Among local voices, financial compensation was significantly associated to hunters and nature tourism was cited the most frequent advantage of lynx presence. Materialistic discourses existed in parallel with non-economic factors and the existence of moral agreement with its protection. The considerable criticism and reference to restrictions by local actors concerning protected areas and conservation

Optimizing cholinergic tone through lynx modulators of nicotinic receptors: implications for plasticity and nicotine addiction.

PubMed

Miwa, Julie M; Lester, Henry A; Walz, Andreas

2012-08-01

The cholinergic system underlies both adaptive (learning and memory) and nonadaptive (addiction and dependency) behavioral changes through its ability to shape and regulate plasticity. Protein modulators such as lynx family members can fine tune the activity of the cholinergic system and contribute to the graded response of the cholinergic system, stabilizing neural circuitry through direct interaction with nicotinic receptors. Release of this molecular brake can unmask cholinergic-dependent mechanisms in the brain. Lynx proteins have the potential to provide top-down control over plasticity mechanisms, including addictive propensity. If this is indeed the case, then, what regulates the regulator? Transcriptional changes of lynx genes in response to pharmacological, physiological, and pathological alterations are explored in this review.

Synthesis and reception of prostaglandins in corpora lutea of domestic cat and lynx.

PubMed

Zschockelt, Lina; Amelkina, Olga; Siemieniuch, Marta J; Kowalewski, Mariusz P; Dehnhard, Martin; Jewgenow, Katarina; Braun, Beate C

2016-08-01

Felids show different reproductive strategies related to the luteal phase. Domestic cats exhibit a seasonal polyoestrus and ovulation is followed by formation of corpora lutea (CL). Pregnant and non-pregnant cycles are reflected by diverging plasma progesterone (P4) profiles. Eurasian and Iberian lynxes show a seasonal monooestrus, in which physiologically persistent CL (perCL) support constantly elevated plasma P4 levels. Prostaglandins (PGs) represent key regulators of reproduction, and we aimed to characterise PG synthesis in feline CL to identify their contribution to the luteal lifespan. We assessed mRNA and protein expression of PG synthases (PTGS2/COX2, PTGES, PGFS/AKR1C3) and PG receptors (PTGER2, PTGER4, PTGFR), and intra-luteal levels of PGE2 and PGF2α Therefore, CL of pregnant (pre-implantation, post-implantation, regression stages) and non-pregnant (formation, development/maintenance, early regression, late regression stages) domestic cats, and prooestrous Eurasian (perCL, pre-mating) and metoestrous Iberian (perCL, freshCL, post-mating) lynxes were investigated. Expression of PTGS2/COX2, PTGES and PTGER4 was independent of the luteal stage in the investigated species. High levels of luteotrophic PGE2 in perCL might be associated with persistence of luteal function in lynxes. Signals for PGFS/AKR1C3 expression were weak in mid and late luteal stages of cats but were absent in lynxes, concomitant with low PGF2α levels in these species. Thus, regulation of CL regression by luteal PGF2α seems negligible. In contrast, expression of PTGFR was evident in nearly all investigated CL of cat and lynxes, implying that luteal regression, e.g. at the end of pregnancy, is triggered by extra-luteal PGF2α. © 2016 Society for Reproduction and Fertility.

Activity Patterns of Eurasian Lynx Are Modulated by Light Regime and Individual Traits over a Wide Latitudinal Range

PubMed Central

Heurich, Marco; Hilger, Anton; Küchenhoff, Helmut; Andrén, Henrik; Bufka, Luděk; Krofel, Miha; Mattisson, Jenny; Odden, John; Persson, Jens; Rauset, Geir R.; Schmidt, Krzysztof; Linnell, John D. C.

2014-01-01

The activity patterns of most terrestrial animals are regarded as being primarily influenced by light, although other factors, such as sexual cycle and climatic conditions, can modify the underlying patterns. However, most activity studies have been limited to a single study area, which in turn limit the variability of light conditions and other factors. Here we considered a range of variables that might potentially influence the activity of a large carnivore, the Eurasian lynx, in a network of studies conducted with identical methodology in different areas spanning latitudes from 49°7′N in central Europe to 70°00′N in northern Scandinavia. The variables considered both light conditions, ranging from a day with a complete day–night cycle to polar night and polar day, as well as individual traits of the animals. We analysed activity data of 38 individual free-ranging lynx equipped with GPS-collars with acceleration sensors, covering more than 11,000 lynx days. Mixed linear additive models revealed that the lynx activity level was not influenced by the daily daylight duration and the activity pattern was bimodal, even during polar night and polar day. The duration of the active phase of the activity cycle varied with the widening and narrowing of the photoperiod. Activity varied significantly with moonlight. Among adults, males were more active than females, and subadult lynx were more active than adults. In polar regions, the amplitude of the lynx daily activity pattern was low, likely as a result of the polycyclic activity pattern of their main prey, reindeer. At lower latitudes, the basic lynx activity pattern peaked during twilight, corresponding to the crepuscular activity pattern of the main prey, roe deer. Our results indicated that the basic activity of lynx is independent of light conditions, but is modified by both individual traits and the activity pattern of the locally most important prey. PMID:25517902

LYNX community advocacy & service engagement (CASE) project final report.

DOT National Transportation Integrated Search

2009-05-14

This report is a final assessment of the Community Advocacy & Service Engagement (CASE) project, a LYNX-FTA research project designed : to study transit education and public engagement methods in Central Florida. In the Orlando area, as in other part...

Novel efficient genome-wide SNP panels for the conservation of the highly endangered Iberian lynx.

PubMed

Kleinman-Ruiz, Daniel; Martínez-Cruz, Begoña; Soriano, Laura; Lucena-Perez, Maria; Cruz, Fernando; Villanueva, Beatriz; Fernández, Jesús; Godoy, José A

2017-07-21

The Iberian lynx (Lynx pardinus) has been acknowledged as the most endangered felid species in the world. An intense contraction and fragmentation during the twentieth century left less than 100 individuals split in two isolated and genetically eroded populations by 2002. Genetic monitoring and management so far have been based on 36 STRs, but their limited variability and the more complex situation of current populations demand more efficient molecular markers. The recent characterization of the Iberian lynx genome identified more than 1.6 million SNPs, of which 1536 were selected and genotyped in an extended Iberian lynx sample. We validated 1492 SNPs and analysed their heterozygosity, Hardy-Weinberg equilibrium, and linkage disequilibrium. We then selected a panel of 343 minimally linked autosomal SNPs from which we extracted subsets optimized for four different typical tasks in conservation applications: individual identification, parentage assignment, relatedness estimation, and admixture classification, and compared their power to currently used STR panels. We ascribed 21 SNPs to chromosome X based on their segregation patterns, and identified one additional marker that showed significant differentiation between sexes. For all applications considered, panels of autosomal SNPs showed higher power than the currently used STR set with only a very modest increase in the number of markers. These novel panels of highly informative genome-wide SNPs provide more powerful, efficient, and flexible tools for the genetic management and non-invasive monitoring of Iberian lynx populations. This example highlights an important outcome of whole-genome studies in genetically threatened species.

Combining resource selection and movement behavior to predict corridors for Canada lynx at their southern range periphery

Treesearch

John R. Squires; Nicholas J. DeCesare; Lucretia E. Olson; Jay A. Kolbe; Mark Hebblewhite; Sean A. Parks

2013-01-01

Maintaining connectivity with source populations is especially important for populations of boreal species at the southern edge of their distributions, where anthropogenic disturbance and climate change can be a threat. In the conterminous United States, Canada lynx Lynx canadensis is a federally threatened boreal species that may require connectivity with northern...

Nuutuuyiglu Tuttuglu (The Lynx and the Two Caribou).

ERIC Educational Resources Information Center

Pope, Mary L.; And Others

This second grade elementary language text, designed for children in bilingual Inupiat-English programs in Ambler, Kobuk, Kiana, Noorvik, and Shungnak, contains a story about a lynx who tries to kill two caribou at one time but who is himself killed. Each page of text is illustrated with a black-and-white drawing. The English equivalent is given…

Gene Sets for Utilization of Primary and Secondary Nutrition Supplies in the Distal Gut of Endangered Iberian Lynx

PubMed Central

Alcaide, María; Messina, Enzo; Richter, Michael; Bargiela, Rafael; Peplies, Jörg; Huws, Sharon A.; Newbold, Charles J.; Golyshin, Peter N.; Simón, Miguel A.; López, Guillermo; Yakimov, Michail M.; Ferrer, Manuel

2012-01-01

Recent studies have indicated the existence of an extensive trans-genomic trans-mural co-metabolism between gut microbes and animal hosts that is diet-, host phylogeny- and provenance-influenced. Here, we analyzed the biodiversity at the level of small subunit rRNA gene sequence and the metabolic composition of 18 Mbp of consensus metagenome sequences and activity characteristics of bacterial intra-cellular extracts, in wild Iberian lynx (Lynx pardinus) fecal samples. Bacterial signatures (14.43% of all of the Firmicutes reads and 6.36% of total reads) related to the uncultured anaerobic commensals Anaeroplasma spp., which are typically found in ovine and bovine rumen, were first identified. The lynx gut was further characterized by an over-representation of ‘presumptive’ aquaporin aqpZ genes and genes encoding ‘active’ lysosomal-like digestive enzymes that are possibly needed to acquire glycerol, sugars and amino acids from glycoproteins, glyco(amino)lipids, glyco(amino)glycans and nucleoside diphosphate sugars. Lynx gut was highly enriched (28% of the total glycosidases) in genes encoding α-amylase and related enzymes, although it exhibited low rate of enzymatic activity indicative of starch degradation. The preponderance of β-xylosidase activity in protein extracts further suggests lynx gut microbes being most active for the metabolism of β-xylose containing plant N-glycans, although β-xylosidases sequences constituted only 1.5% of total glycosidases. These collective and unique bacterial, genetic and enzymatic activity signatures suggest that the wild lynx gut microbiota not only harbors gene sets underpinning sugar uptake from primary animal tissues (with the monotypic dietary profile of the wild lynx consisting of 80–100% wild rabbits) but also for the hydrolysis of prey-derived plant biomass. Although, the present investigation corresponds to a single sample and some of the statements should be considered qualitative, the data most likely

Reproductive traits in captive and free-ranging males of the critically endangered Iberian lynx (Lynx pardinus).

PubMed

Gañán, Natalia; Sestelo, Adrián; Garde, J Julián; Martínez, Fernando; Vargas, Astrid; Sánchez, Iñigo; Pérez-Aspa, María José; López-Bao, José Vicente; Palomares, Francisco; Gomendio, Montserrat; Roldan, Eduardo R S

2010-01-01

The Iberian lynx (Lynx pardinus) is the most endangered felid in the world. Adequate genetic management of in situ and ex situ populations, and linkage between both, require knowledge on male reproductive biology and factors influencing it. We examined the influence of age, free-ranging versus captive conditions and seasonality on phenotypic, endocrine and semen traits, and links between reproductive traits and male fertility. Males had relatively small testes, produced low sperm numbers, a low proportion of normal sperm, and a high proportion of motile sperm. Young (2-year-old) males had lower testosterone levels, fewer sperm, and a lower proportion of motile and normal sperm than > or =4-year-old males. No major differences were found in semen traits before and after the mating season or between free-ranging and captive males, although the latter had better sperm motility. Males with larger relative testes weight and more sperm copulated more frequently, whereas males that produced more sperm with higher motility produced more cubs per female. In conclusion, small relative testes size and low sperm quality could indicate either low levels of sperm competition or high levels of inbreeding. Young males are probably subfertile; there is a slight trend for males in the captive breeding programme to have better semen quality than wild males, and males with higher sperm production are sexually more active and more fertile. These findings have major implications for decisions regarding which males should breed, provide samples for the genetic resource bank, or participate in programmes involving the use of assisted reproductive techniques.

Appendix B: Fisher, lynx, wolverine summary of distribution information

Treesearch

Mary Maj

1994-01-01

We present maps depicting distributions of fisher, lynx, and wolverine in the western United States since 1961. Comparison of past and current distributions of species can shed light on population persistence, periods of population isolation, meta-population structure, and important connecting landscapes. Information on the distribution of the American marten is not...

Lynx conservation in an ecosystem management context [Chapter 15

Treesearch

Kevin S. McKelvey; Keith B. Aubry; James K. Agee; Steven W. Buskirk; Leonard F. Ruggiero; Gary M. Koehler

2000-01-01

In an ecosystem management context, management for lynx must occur in the context of the needs of other species, watershed health, and a variety of products, outputs, and uses. This chapter presents a management model based on the restoration of historical patterns and processes. We argue that this model is sustainable in a formal sense, practical, and likely...

Ecology and conservation of lynx in the United States

Treesearch

Leonard F. Ruggiero; Keith B. Aubry; Steven W. Buskirk; Gary M. Koehler; Charles J. Krebs; Kevin S. McKelvey; John R. Squires

1999-01-01

Once found throughout the Rocky Mountains and forests of the northern states, the lynx now hides in pockets of its former range while feeding mostly on small animals like snowshoe hares. A team of government and university scientists review the newest scientific knowledge of this unique cat's history, distribution, and ecology. The chapters on this web site...

Space-use, diet, demographics, and topographic associations of lynx in the southern Canadian Rocky Mountains: A study [Chapter 12

Treesearch

Clayton D. Apps

2000-01-01

Snowshoe hares are considered the primary prey of Canada lynx throughout their range. Relative to northern populations, hares occurring in mountainous regions at southern latitudes are thought to remain at low and stable densities through time. Hence, the ecology of associated southern lynx populations is expected to resemble that of northern populations during the low...

Habitat fragmentation and interspecific competition: Implications for lynx conservation [Chapter 4

Treesearch

Steven W. Buskirk

2000-01-01

Habitat fragmentation and interspecific competition are two important forces that potentially affect lynx populations. Fragmentation operates by various mechanisms, including direct habitat loss, vehicle collisions and behavioral disturbance from roads, and changes in landscape features such as edges. Competition takes two forms: Exploitation competition involves...

Implications from XMM and Chandra Source Catalogs for Future Studies with Lynx

NASA Astrophysics Data System (ADS)

Ptak, Andrew

2018-01-01

Lynx will perform extremely sensitive X-ray surveys by combining very high-resolution imaging over a large field of view with a high effective area. These will include deep planned surveys and serendipitous source surveys. Here we discuss implications that can be gleaned from current Chandra and XMM-Newton serendipitous source surveys. These current surveys have discovered novel sources such as tidal disruption events, binary AGN, and ULX pulsars. In addition these surveys have detected large samples of normal galaxies, low-luminosity AGN and quasars due to the wide-area coverage of the Chandra and XMM-Newton source catalogs, allowing the evolution of these phenonema to be explored. The wide area Lynx surveys will probe down further in flux and will be coupled with very sensitive wide-area surveys such as LSST and SKA, allowing for detailed modeling of their SEDs and the discovery of rare, exotic sources and transient events.

Ecology of lynx in northern Canada and Alaska [Chapter 9

Treesearch

Garth Mowat; Kim G. Poole; Mark O' Donoghue

2000-01-01

We review the ecology of lynx in the northern part of its range, drawing heavily on the results of recent research from that region. Snowshoe hares form the bulk of prey items in essentially all studies and at all periods in the cycle, but use of alternative prey, often red squirrel, increases as hares become scarce. Caching of freshly killed prey is rare,...

Forensic veterinary radiology: ballistic-radiological 3D computertomographic reconstruction of an illegal lynx shooting in Switzerland.

PubMed

Thali, Michael J; Kneubuehl, Beat P; Bolliger, Stephan A; Christe, Andreas; Koenigsdorfer, Urs; Ozdoba, Christoph; Spielvogel, Elke; Dirnhofer, Richard

2007-08-24

The lynx, which was reintroduced to Switzerland after being exterminated at the beginning of the 20th century, is protected by Swiss law. However, poaching occurs from time to time, which makes criminal investigations necessary. In the presented case, an illegally shot lynx was examined by conventional plane radiography and three-dimensional multislice computertomography (3D MSCT), of which the latter yielded superior results with respect to documentation and reconstruction of the inflicted gunshot wounds. We believe that 3D MSCT, already described in human forensic-pathological cases, is also a suitable and promising new technique for veterinary pathology.

Performance and rotor loads measurements of the Lynx XZ170 helicopter with rectangular blades

NASA Technical Reports Server (NTRS)

Lau, Benton H.; Louie, Alexander W.; Griffiths, Nicholas; Sotiriou, Costantinos P.

1993-01-01

This report presents the results of a series of flight tests on the Lynx XZ170 helicopter with rectangular blades. The test objectives were to explore the flight envelope and to measure the performance and structural loads of the Lynx main-rotor system. The tests were conducted as part of the British Experimental Rotor Program (BERP) under a contract with the Ministry of Defense in England. Data were acquired for steady-level flights at five weight coefficients. Some flight conditions were tested at beyond the retreating-blade stall boundary, which was defined by a predetermined limit on the pitchlink vibratory load. In addition to documenting the flight conditions and data, this report describes the aircraft, particularly the rotor system, in detail.

The subtle role of climate change on population genetic structure in Canada lynx.

PubMed

Row, Jeffrey R; Wilson, Paul J; Gomez, Celine; Koen, Erin L; Bowman, Jeff; Thornton, Daniel; Murray, Dennis L

2014-07-01

Anthropogenically driven climatic change is expected to reshape global patterns of species distribution and abundance. Given recent links between genetic variation and environmental patterns, climate change may similarly impact genetic population structure, but we lack information on the spatial and mechanistic underpinnings of genetic-climate associations. Here, we show that current genetic variability of Canada lynx (Lynx canadensis) is strongly correlated with a winter climate gradient (i.e. increasing snow depth and winter precipitation from west-to-east) across the Pacific-North American (PNO) to North Atlantic Oscillation (NAO) climatic systems. This relationship was stronger than isolation by distance and not explained by landscape variables or changes in abundance. Thus, these patterns suggest that individuals restricted dispersal across the climate boundary, likely in the absence of changes in habitat quality. We propose habitat imprinting on snow conditions as one possible explanation for this unusual phenomenon. Coupling historical climate data with future projections, we also found increasingly diverging snow conditions between the two climate systems. Based on genetic simulations using projected climate data (2041-2070), we predicted that this divergence could lead to a threefold increase in genetic differentiation, potentially leading to isolated east-west populations of lynx in North America. Our results imply that subtle genetic structure can be governed by current climate and that substantive genetic differentiation and related ecological divergence may arise from changing climate patterns. © 2014 John Wiley & Sons Ltd.

Wave of chaos in a spatial eco-epidemiological system: Generating realistic patterns of patchiness in rabbit-lynx dynamics.

PubMed

Upadhyay, Ranjit Kumar; Roy, Parimita; Venkataraman, C; Madzvamuse, A

2016-11-01

In the present paper, we propose and analyze an eco-epidemiological model with diffusion to study the dynamics of rabbit populations which are consumed by lynx populations. Existence, boundedness, stability and bifurcation analyses of solutions for the proposed rabbit-lynx model are performed. Results show that in the presence of diffusion the model has the potential of exhibiting Turing instability. Numerical results (finite difference and finite element methods) reveal the existence of the wave of chaos and this appears to be a dominant mode of disease dispersal. We also show the mechanism of spatiotemporal pattern formation resulting from the Hopf bifurcation analysis, which can be a potential candidate for understanding the complex spatiotemporal dynamics of eco-epidemiological systems. Implications of the asymptotic transmission rate on disease eradication among rabbit population which in turn enhances the survival of Iberian lynx are discussed. Crown Copyright © 2016. Published by Elsevier Inc. All rights reserved.

Long-range gene flow and the effects of climatic and ecological factors on genetic structuring in a large, solitary carnivore: the Eurasian lynx.

PubMed

Ratkiewicz, Mirosław; Matosiuk, Maciej; Saveljev, Alexander P; Sidorovich, Vadim; Ozolins, Janis; Männil, Peep; Balciauskas, Linas; Kojola, Ilpo; Okarma, Henryk; Kowalczyk, Rafał; Schmidt, Krzysztof

2014-01-01

Due to their high mobility, large terrestrial predators are potentially capable of maintaining high connectivity, and therefore low genetic differentiation among populations. However, previous molecular studies have provided contradictory findings in relation to this. To elucidate patterns of genetic structure in large carnivores, we studied the genetic variability of the Eurasian lynx, Lynx lynx throughout north-eastern Europe using microsatellite, mitochondrial DNA control region and Y chromosome-linked markers. Using SAMOVA we found analogous patterns of genetic structure based on both mtDNA and microsatellites, which coincided with a relatively little evidence for male-biased dispersal. No polymorphism for the cytochrome b and ATP6 mtDNA genes and Y chromosome-linked markers were found. Lynx inhabiting a large area encompassing Finland, the Baltic countries and western Russia formed a single genetic unit, while some marginal populations were clearly divergent from others. The existence of a migration corridor was suggested to correspond with distribution of continuous forest cover. The lowest variability (in both markers) was found in lynx from Norway and Białowieża Primeval Forest (BPF), which coincided with a recent demographic bottleneck (Norway) or high habitat fragmentation (BPF). The Carpathian population, being monomorphic for the control region, showed relatively high microsatellite diversity, suggesting the effect of a past bottleneck (e.g. during Last Glacial Maximum) on its present genetic composition. Genetic structuring for the mtDNA control region was best explained by latitude and snow cover depth. Microsatellite structuring correlated with the lynx's main prey, especially the proportion of red deer (Cervus elaphus) in its diet. Eurasian lynx are capable of maintaining panmictic populations across eastern Europe unless they are severely limited by habitat continuity or a reduction in numbers. Different correlations of mtDNA and microsatellite

Retrospective study of morbidity and mortality of captive Iberian lynx (Lynx pardinus) in the ex situ conservation programme (2004-June 2010).

PubMed

Martínez, Fernando; Manteca, Xavier; Pastor, Josep

2013-12-01

Medical records of 120 Iberian lynx (Lynx pardinus) from the captive breeding population (CBP), 96 of which were older than 1 wk old, were studied from January 2004 to June 2010. From a total of 413 clinical signs recorded, it was possible to obtain a diagnosis in 258 (62.5%). Inappetence, skin wound, and vomiting had the highest incidence. Adult (2 to 6 yr old) and juvenile (1 wk to 1 yr old) animals accounted for most of the clinical signs. Vitamin D toxicosis and intraspecific trauma accounted for 55.4% and 15.1% of the clinical signs, respectively. Renal toxicosis due to the administration of supplements with an excess of vitamin D occurred in 2009 and affected a total of 39 individuals. Intraspecific trauma cases were predominantly observed from sibling aggression. Diet-related conditions consisted of sporadic cases of fatal salmonellosis, dermatophytosis, and gastrointestinal episodes. Suspected idiopathic epilepsy and femoral neck metaphyseal osteopathy were also observed. A total of 15 animals older than 1 wk old died including five vitamin D toxicosis cases and three juveniles due to intraspecific trauma. Mycobacterium bovis was found as a secondary infection in two animals that died from vitamin D toxicosis. Abortions, premature births, and stillbirths accounted for 12 mortalities, and 13 neonatal deaths due to maternal neglect or bacterial sepsis were observed. Data show that improvement of diet-related conditions is a key factor in preserving the health of animals in the CBP. Thus, the control of food and supplement composition, rabbit farm suppliers, and hygiene should be standardized and improved. Furthermore, data recording and diagnostic protocols should be standardized.

Soft Toys as Instructional Technology in Higher Education: The Case of Llewelyn the Lynx

ERIC Educational Resources Information Center

Raye, Lee

2017-01-01

Scholarship on instructive technologies in higher education has emphasized the use of high-tech facilitative technologies for long-term use, and low-tech props to illustrate single topics. This paper, on the contrary, discusses the use of a long-term, low-tech instructional technology: Llewelyn the Lynx was a soft animal used to assist with…

A Lopsided Lynx

NASA Image and Video Library

2017-12-08

This galaxy, known as NGC 2337, resides 25 million light-years away in the constellation of Lynx. NGC 2337 is an irregular galaxy, meaning that it — along with a quarter of all galaxies in the Universe — lacks a distinct, regular appearance. The galaxy was discovered in 1877 by the French astronomer Édouard Stephan who, in the same year, discovered the galactic group Stephan’s Quintet (heic0910i). Although irregular galaxies may never win a beauty prize when competing with their more symmetrical spiral and elliptical peers, astronomers consider them to be very important. Some irregular galaxies may have once fallen into one of the regular classes of the Hubble sequence, but were warped and deformed by a passing cosmic companion. As such, irregular galaxies provide astronomers with a valuable opportunity to learn more about galactic evolution and interaction. Despite the disruption, gravitational interactions between galaxies can kickstart star formation activity within the affected galaxies, which may explain the pockets of blue light scattered throughout NGC 2337. These patches and knots of blue signal the presence of young, newly formed, hot stars. Image credit: ESA/Hubble & NASA Text credit: European Space Agency NASA image use policy. NASA Goddard Space Flight Center enables NASA’s mission through four scientific endeavors: Earth Science, Heliophysics, Solar System Exploration, and Astrophysics. Goddard plays a leading role in NASA’s accomplishments by contributing compelling scientific knowledge to advance the Agency’s mission. Follow us on Twitter Like us on Facebook Find us on Instagram

Identification of volatile components of bobcat (Lynx rufus) urine.

PubMed

Mattina, M J; Pignatello, J J; Swihart, R K

1991-02-01

Bobcat (Lynx rufus) urine reduces scent-marking activity of woodchucks (Marmota monax) and feeding activity of snowshoe hares (Lepus americanus) and deer (Odocoileus virginianus, O. hemionus). In order to identify the semiochemicals responsible for these behavior modifications, a dichloromethane extract of the bobcat urine was analyzed by GC-MS. Among the known compounds identified in the extract are phenol, indole, dimethyl sulfone, and 3-mercapto-3-methylbutanol. Compounds for which spectroscopic data are presented for the first time include one sulfide, two disulfides, and two trisulfides. The sulfur compounds are derived from an amino acid,S-(l,1-dimethyl-3-hydroxypropyl)cysteine ("felinine"), which was identified several years ago in the urine of the domestic cat (Felis domesticus).

Characterization of regionally associated feline immunodeficiency virus (FIV) in bobcats (Lynx rufus).

PubMed

Lagana, Danielle M; Lee, Justin S; Lewis, Jesse S; Bevins, Sarah N; Carver, Scott; Sweanor, Linda L; McBride, Roy; McBride, Caleb; Crooks, Kevin R; VandeWoude, Sue

2013-07-01

Feline immunodeficiency virus (FIV) classically infects felid species with highly divergent species-specific FIVs. However, recent studies have detected an FIV strain infecting both bobcats (Lynx rufus) and pumas (Puma concolor) in California and Florida. To further investigate this observation, we evaluated FIV from bobcats in Florida (n=25) and Colorado (n=80) between 2008 and 2011. Partial viral sequences from five Florida bobcats cluster with previously published sequences from Florida panthers. We did not detect FIV in Colorado bobcats.

Spatiotemporal Dynamics of Genetic Variation in the Iberian Lynx along Its Path to Extinction Reconstructed with Ancient DNA

PubMed Central

Casas-Marce, Mireia; Marmesat, Elena; Soriano, Laura; Martínez-Cruz, Begoña; Lucena-Perez, Maria; Nocete, Francisco; Rodríguez-Hidalgo, Antonio; Canals, Antoni; Nadal, Jordi; Detry, Cleia; Bernáldez-Sánchez, Eloísa; Fernández-Rodríguez, Carlos; Pérez-Ripoll, Manuel; Stiller, Mathias; Hofreiter, Michael; Rodríguez, Alejandro; Revilla, Eloy; Delibes, Miguel; Godoy, José A.

2017-01-01

Abstract There is the tendency to assume that endangered species have been both genetically and demographically healthier in the past, so that any genetic erosion observed today was caused by their recent decline. The Iberian lynx (Lynx pardinus) suffered a dramatic and continuous decline during the 20th century, and now shows extremely low genome- and species-wide genetic diversity among other signs of genomic erosion. We analyze ancient (N = 10), historical (N = 245), and contemporary (N = 172) samples with microsatellite and mitogenome data to reconstruct the species' demography and investigate patterns of genetic variation across space and time. Iberian lynx populations transitioned from low but significantly higher genetic diversity than today and shallow geographical differentiation millennia ago, through a structured metapopulation with varying levels of diversity during the last centuries, to two extremely genetically depauperate and differentiated remnant populations by 2002. The historical subpopulations show varying extents of genetic drift in relation to their recent size and time in isolation, but these do not predict whether the populations persisted or went finally extinct. In conclusion, current genetic patterns were mainly shaped by genetic drift, supporting the current admixture of the two genetic pools and calling for a comprehensive genetic management of the ongoing conservation program. This study illustrates how a retrospective analysis of demographic and genetic patterns of endangered species can shed light onto their evolutionary history and this, in turn, can inform conservation actions. PMID:28962023

Spatiotemporal Dynamics of Genetic Variation in the Iberian Lynx along Its Path to Extinction Reconstructed with Ancient DNA.

PubMed

Casas-Marce, Mireia; Marmesat, Elena; Soriano, Laura; Martínez-Cruz, Begoña; Lucena-Perez, Maria; Nocete, Francisco; Rodríguez-Hidalgo, Antonio; Canals, Antoni; Nadal, Jordi; Detry, Cleia; Bernáldez-Sánchez, Eloísa; Fernández-Rodríguez, Carlos; Pérez-Ripoll, Manuel; Stiller, Mathias; Hofreiter, Michael; Rodríguez, Alejandro; Revilla, Eloy; Delibes, Miguel; Godoy, José A

2017-11-01

There is the tendency to assume that endangered species have been both genetically and demographically healthier in the past, so that any genetic erosion observed today was caused by their recent decline. The Iberian lynx (Lynx pardinus) suffered a dramatic and continuous decline during the 20th century, and now shows extremely low genome- and species-wide genetic diversity among other signs of genomic erosion. We analyze ancient (N = 10), historical (N = 245), and contemporary (N = 172) samples with microsatellite and mitogenome data to reconstruct the species' demography and investigate patterns of genetic variation across space and time. Iberian lynx populations transitioned from low but significantly higher genetic diversity than today and shallow geographical differentiation millennia ago, through a structured metapopulation with varying levels of diversity during the last centuries, to two extremely genetically depauperate and differentiated remnant populations by 2002. The historical subpopulations show varying extents of genetic drift in relation to their recent size and time in isolation, but these do not predict whether the populations persisted or went finally extinct. In conclusion, current genetic patterns were mainly shaped by genetic drift, supporting the current admixture of the two genetic pools and calling for a comprehensive genetic management of the ongoing conservation program. This study illustrates how a retrospective analysis of demographic and genetic patterns of endangered species can shed light onto their evolutionary history and this, in turn, can inform conservation actions. © The Author 2017. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

Discovery of a large-scale clumpy structure around the Lynx supercluster at z~ 1.27

NASA Astrophysics Data System (ADS)

Nakata, Fumiaki; Kodama, Tadayuki; Shimasaku, Kazuhiro; Doi, Mamoru; Furusawa, Hisanori; Hamabe, Masaru; Kimura, Masahiko; Komiyama, Yutaka; Miyazaki, Satoshi; Okamura, Sadanori; Ouchi, Masami; Sekiguchi, Maki; Ueda, Yoshihiro; Yagi, Masafumi; Yasuda, Naoki

2005-03-01

We report the discovery of a probable large-scale structure composed of many galaxy clumps around the known twin clusters at z= 1.26 and 1.27 in the Lynx region. Our analysis is based on deep, panoramic, and multicolour imaging, 26.4 × 24.1 arcmin2 in VRi'z' bands with the Suprime-Cam on the 8.2-m Subaru telescope. This unique, deep and wide-field imaging data set allows us for the first time to map out the galaxy distribution in the highest-redshift supercluster known. We apply a photometric redshift technique to extract plausible cluster members at z~ 1.27 down to i'= 26.15 (5σ) corresponding to ~M*+ 2.5 at this redshift. From the two-dimensional distribution of these photometrically selected galaxies, we newly identify seven candidates of galaxy groups or clusters where the surface density of red galaxies is significantly high (>5σ), in addition to the two known clusters. These candidates show clear red colour-magnitude sequences consistent with a passive evolution model, which suggests the existence of additional high-density regions around the Lynx superclusters.

Fast rockfall hazard assessment along a road section using the new LYNX Mobile Mapper Lidar

NASA Astrophysics Data System (ADS)

Dario, Carrea; Celine, Longchamp; Michel, Jaboyedoff; Marc, Choffet; Marc-Henri, Derron; Clement, Michoud; Andrea, Pedrazzini; Dario, Conforti; Michael, Leslar; William, Tompkinson

2010-05-01

The terrestrial laser scanning (TLS) is an active remote sensing technique providing high resolution point clouds of the topography. The high resolution digital elevations models (HRDEM) derived of these point clouds are an important tool for the stability analysis of slopes. The LYNX Mobile Mapper is a new TLS generation developed by Optech. Its particularity is to be mounted on a vehicle and providing a 360° high density point cloud at 200-khz measurement rate in a very short acquisition time. It is composed of two sensors improving the resolution and reducing the laser shadowing. The spatial resolution is better than 10 cm at 10 m range and at a velocity of 50 km/h and the reflectivity of the signal is around 20% at a distance of 200 m. The Lidar is also equipped with a DGPS and an inertial measurement unit (IMU) which gives real time position and georeferences directly the point cloud. Thanks to its ability to provide a continuous data set from an extended area along a road, this TLS system is useful for rockfall hazard assessment. In addition, this new scanner decrease considerably the time spent in the field and the postprocessing is reduced thanks to resultant georeferenced data. Nevertheless, its application is limited to an area close to the road. The LYNX has been tested near Pontarlier (France) along roads sections affected by rockfall. Regarding to the tectonic context, the studied area is located in the Folded Jura mainly composed of limestone. The result is a very detailed point cloud with a point spacing of 4 cm. The LYNX presents detailed topography on which a structural analysis has been carried out using COLTOP-3D. It allows obtaining a full structural description along the road. In addition, kinematic tests coupled with probabilistic analysis give a susceptibility map of the road cut or natural cliffs above the road. Comparisons with field survey confirm the Lidar approach.

Characterization of the Commercially-Available Fluorescent Chloroquine-BODIPY Conjugate, LynxTag-CQGREEN, as a Marker for Chloroquine Resistance and Uptake in a 96-Well Plate Assay

PubMed Central

Chan, Kitti W. K.; Choy, Kit-Ying; Rénia, Laurent; Russell, Bruce; Lear, Martin J.; Nosten, François H.; Tan, Kevin S. W.; Chow, Larry M. C.

2014-01-01

Chloroquine was a cheap, extremely effective drug against Plasmodium falciparum until resistance arose. One approach to reversing resistance is the inhibition of chloroquine efflux from its site of action, the parasite digestive vacuole. Chloroquine accumulation studies have traditionally relied on radiolabelled chloroquine, which poses several challenges. There is a need for development of a safe and biologically relevant substitute. We report here a commercially-available green fluorescent chloroquine-BODIPY conjugate, LynxTag-CQGREEN, as a proxy for chloroquine accumulation. This compound localized to the digestive vacuole of the parasite as observed under confocal microscopy, and inhibited growth of chloroquine-sensitive strain 3D7 more extensively than in the resistant strains 7G8 and K1. Microplate reader measurements indicated suppression of LynxTag-CQGREEN efflux after pretreatment of parasites with known reversal agents. Microsomes carrying either sensitive- or resistant-type PfCRT were assayed for uptake; resistant-type PfCRT exhibited increased accumulation of LynxTag-CQGREEN, which was suppressed by pretreatment with known chemosensitizers. Eight laboratory strains and twelve clinical isolates were sequenced for PfCRT and Pgh1 haplotypes previously reported to contribute to drug resistance, and pfmdr1 copy number and chloroquine IC50s were determined. These data were compared with LynxTag-CQGREEN uptake/fluorescence by multiple linear regression to identify genetic correlates of uptake. Uptake of the compound correlated with the logIC50 of chloroquine and, more weakly, a mutation in Pgh1, F1226Y. PMID:25343249

Cryobanking the genetic diversity in the critically endangered Iberian lynx (Lynx pardinus) from skin biopsies. Investigating the cryopreservation and culture ability of highly valuable explants and cells.

PubMed

León-Quinto, Trinidad; Simón, Miguel A; Sánchez, Angel; Martín, Francisco; Soria, Bernat

2011-04-01

Cryobanking skin samples permit preserving a maximum of genetic representation from the population biodiversity. This is a relevant aspect for threatened species, potentially menaced by an epizooty and from which it is difficult to obtain gametes. As a first step for properly cryobanking skin samples of a given species, the optimal conditions of culture and freezing have to be studied by covering a broad range of possibilities. This paper presents, for the first time, a systematic study of such conditions for the Iberian lynx (Lynx pardinus). To that end, we have analyzed twenty different culture conditions and fifteen different freezing solutions for skin explants, as well as three freezing solutions for isolated cells derived from them. The culture conditions included both two different culture strategies and several combinations of nutritional supplements and mitotic agents. For the freezing solutions, we have considered different concentrations of the permeating cryoprotectant dimethyl sulfoxide (Me(2)SO) either alone (5%, 7.5%, 10%, 12.5% and 15% v/v for explants, 10% for isolated cells) or along with the non-permeating cryoprotectant sucrose (0.1 or 0.2M). Our results have been analyzed through several quantitative parameters and show that only thawed explants cryopreserved in Me(2)SO (10%) either alone or with sucrose (0.2M) presented similar properties to those in optimal fresh cultures. In addition, for these freezing conditions, isolated thawed cells also presented high survival rates (90%) and percentages of cellular functionality (85%). These results, focussed on the most endangered felid in the world, could be also useful for other threatened/endangered species. Copyright © 2011 Elsevier Inc. All rights reserved.

The scientific basis for conserving forest carnivores: American marten, fisher, lynx, and wolverine in the western United States.

Treesearch

Leonard F. Ruggiero; Keith B. Aubry; Steven W. Buskirk; L. Jack Lyon; William J. Zielinski

1994-01-01

This cooperative effort by USDA Forest Service Research and the National Forest System assesses the state of knowledge related to the conservation status of four forest carnivores in the western United States: American marten, fisher, lynx, and wolverine. The conservation assessment reviews the biology and ecology of these species. It also discusses management...

Antibody detection and molecular characterization of toxoplasma gondii from bobcats (Lynx rufus), domestic cats (Felis catus), and wildlife from Minnesota, USA

USDA-ARS?s Scientific Manuscript database

Little is known of the epidemiology of toxoplasmosis in Minnesota. In this study, we evaluated Toxoplasma gondii infection in 50 wild bobcats (Lynx rufus) and 75 other animals on/near 10 cattle farms. Antibodies to T. gondii were assayed in serum samples or tissue fluids by the modified agglutinatio...

Fast and automated characterization of major constituents in rat biofluid after oral administration of Abelmoschus manihot extract using ultra-performance liquid chromatography/quadrupole time-of-flight mass spectrometry and MetaboLynx.

PubMed

Guo, Jianming; Shang, Er-Xin; Duan, Jin-Ao; Tang, Yuping; Qian, Dawei; Su, Shulan

2010-02-01

In drug metabolism research, the setting up of a complex series of mass spectrometry experiments and the subsequent analysis of the large amounts of data produced are often time-consuming. In this paper, we describe a strategy using ultra-performance liquid chromatography/quadrupole time-of-flight mass spectrometry (UPLC/QTOFMS) with automated data analysis software (MetaboLynx) for fast analysis of the metabolic profile of flavonoids in Abelmoschus manihot. Rat plasma and urine samples collected 1 h and 0-12 h after oral administration of Abelmoschus manihot were analyzed by UPLC/QTOFMS within 15 min. The post-acquisition data were processed using MetaboLynx. With key parameters carefully set, MetaboLynx is able to show the presence of a wide range of metabolites with only a limited requirement for manual intervention and data interpretation time. A total of 16 and 38 metabolites were identified in plasma and urine compared with blank samples. The results indicated that methylation and glucuronidation after deglycosylation were the major metabolic pathways of flavonoid glycosides in Abelmoschus manihot. The present study provided important information about the metabolism of flavonoid glycosides in Abelmoschus manihot which will be helpful for fully understanding the mechanism of action of this herb. Furthermore, this work demonstrated the potential of the UPLC/QTOFMS approach using MetaboLynx for fast and automated identification of metabolites from Chinese herbal medicines. Copyright (c) 2010 John Wiley & Sons, Ltd.

Comparison of Hybrid K-Edge Densitometer (HKED) Performance Operating with the Canberra Lynx MCA and the Canberra ICB-NIM Electronics

DOE Office of Scientific and Technical Information (OSTI.GOV)

McElroy, Robert Dennis

From the 1991 until 2008 the Canberra Hybrid K-Edge Densitometer systems were provided with ICB-NIM (Integrated Control Bus – Nuclear Instrument Module) acquisition electronics. Newer electronics modules, such as the Lynx, were not supported under the VMS based operating system. The LYNX module was provided as the standard acquisition electronics following the release of the Windows based CHKED software. This report compares the electronics dead-time, gain shifts, detector resolution and measurement performance of the HKED system operated with the two types of acquisition modules. The comparison was performed using measurements obtained with the ORNL HKED system. The original intent ofmore » this study was to take advantage of both the timing and energy outputs from the HPGE detector to acquire data with both sets of electronics in parallel. Although this approach has been applied successfully with other systems, in this case we found the timing output produced a significant amount of noise such that a comparison between the electronics would be invalid. So the comparative measurements were performed sequentially. The ICB-NIM data was acquired over the course of 12 months with 255 measurements while the LYNX data was acquired over a period of 10 months with 75 measurements. To simplify the comparison, all data used in this study was acquired using the Canberra CHKED (V1.0) software package. The performance analysis was based primarily on the peak locations, peak widths and concentration values reported by the CHKED software. The raw spectra from the XRF measurements were also examined to extract additional 109Cd peak location and width data for the hybrid measurements (the standard hybrid report template does not report these values).« less

Lynx: Automatic Elderly Behavior Prediction in Home Telecare

PubMed Central

Lopez-Guede, Jose Manuel; Moreno-Fernandez-de-Leceta, Aitor; Martinez-Garcia, Alexeiw; Graña, Manuel

2015-01-01

This paper introduces Lynx, an intelligent system for personal safety at home environments, oriented to elderly people living independently, which encompasses a decision support machine for automatic home risk prevention, tested in real-life environments to respond to real time situations. The automatic system described in this paper prevents such risks by an advanced analytic methods supported by an expert knowledge system. It is minimally intrusive, using plug-and-play sensors and machine learning algorithms to learn the elder's daily activity taking into account even his health records. If the system detects that something unusual happens (in a wide sense) or if something is wrong relative to the user's health habits or medical recommendations, it sends at real-time alarm to the family, care center, or medical agents, without human intervention. The system feeds on information from sensors deployed in the home and knowledge of subject physical activities, which can be collected by mobile applications and enriched by personalized health information from clinical reports encoded in the system. The system usability and reliability have been tested in real-life conditions, with an accuracy larger than 81%. PMID:26783514

Lynx: Automatic Elderly Behavior Prediction in Home Telecare.

PubMed

Lopez-Guede, Jose Manuel; Moreno-Fernandez-de-Leceta, Aitor; Martinez-Garcia, Alexeiw; Graña, Manuel

2015-01-01

This paper introduces Lynx, an intelligent system for personal safety at home environments, oriented to elderly people living independently, which encompasses a decision support machine for automatic home risk prevention, tested in real-life environments to respond to real time situations. The automatic system described in this paper prevents such risks by an advanced analytic methods supported by an expert knowledge system. It is minimally intrusive, using plug-and-play sensors and machine learning algorithms to learn the elder's daily activity taking into account even his health records. If the system detects that something unusual happens (in a wide sense) or if something is wrong relative to the user's health habits or medical recommendations, it sends at real-time alarm to the family, care center, or medical agents, without human intervention. The system feeds on information from sensors deployed in the home and knowledge of subject physical activities, which can be collected by mobile applications and enriched by personalized health information from clinical reports encoded in the system. The system usability and reliability have been tested in real-life conditions, with an accuracy larger than 81%.

Performance and loads data from an outdoor hover test of a Lynx tail rotor

NASA Technical Reports Server (NTRS)

Signor, David B.; Yamauchi, Gloria K.; Smith, Charles A.; Hagen, Martin J.

1989-01-01

A Lynx tail rotor was tested in hover at the Outdoor Aerodynamic Research Facility at NASA Ames Research Center. The test objectives were to measure the isolated rotor performance to provide a baseline for subsequent testing, and to operate the rotor throughout the speed and collective envelope before testing in the NFAC 40- by 80-Foot Wind Tunnel. Rotor forces and blade bending moments were measured at ambient wind conditions from zero to 6.23 m/sec. The test envelope was limited to rotor speeds of 1550 to 1850 rpm and minus 13 deg to plus 20 deg of blade collective pitch. The isolated rotor performance and blade loads data are presented.

Real time UNIX in embedded control -- A case study within context of LynxOS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kleines, H.; Zwoll, K.

1996-02-01

Intelligent communication controllers for a layered protocol profile are a typical example of an embedded control application, where the classical approach for the software development is based on a proprietary real-time operating system kernel under which the individual layers are implemented as tasks. Based on the exemplary implementation of a derivative of MAP 3.0, an unusual and innovative approach is presented, where the protocol software is implemented under the UNIX-compatible real-time operating system LynxOS. The overall design of the embedded control application is presented under a more general view and economical implications as well as aspects of the development environmentmore » and performance are discussed.« less

Real time UNIX in embedded control-a case study within the context of LynxOS

NASA Astrophysics Data System (ADS)

Kleines, H.; Zwoll, K.

1996-02-01

Intelligent communication controllers for a layered protocol profile are a typical example of an embedded control application, where the classical approach for the software development is based on a proprietary real-time operating system kernel under which the individual layers are implemented as tasks. Based on the exemplary implementation of a derivative of MAP 3.0, an unusual and innovative approach is presented, where the protocol software is implemented under the UNIX-compatible real-time operating system LynxOS. The overall design of the embedded control application is presented under a more general view and economical implications as well as aspects of the development environment and performance are discussed

Valuing the chances of survival of two distinct Eurasian lynx populations in Poland - do people want to keep the doors open?

PubMed

Bartczak, Anna; Meyerhoff, Jürgen

2013-11-15

This study investigates individuals' preferences toward protection programs aimed at increasing the chances of survival of the two distinct Eurasian lynx populations in Poland. Those two groups, the Lowland and the Carpathian population, are exposed to different risks of extinction as they have different numbers, different-sized areas of occupation and different migration possibilities. Using a discrete choice experiment we examine the influence of the initial degree of endangerment on the allocation of respondents' funds. The results show that people prefer to invest in the conservation of the lynx population, which has initially lower chances of survival. The main driver of respondents' choices seems to be loss aversion rather than the urge to invest in an option with an expected higher outcome. This observation can be interpreted as people trying to keep all the options - doors - open by devoting more funds to the more vulnerable population than to the more stable one. Employing a scale-extended latent class model allowed us to detect segments among individuals showing different types of response behavior, including a form of serial non-participation. Copyright © 2013 Elsevier Ltd. All rights reserved.

Hubble Spots a Barred Lynx Spiral

NASA Image and Video Library

2017-12-08

Discovered by British astronomer William Herschel over 200 years ago, NGC 2500 lies about 30 million light-years away in the northern constellation of Lynx. As this NASA/ESA Hubble Space Telescope image shows, NGC 2500 is a particular kind of spiral galaxy known as a barred spiral, its wispy arms swirling out from a bright, elongated core. Barred spirals are actually more common than was once thought. Around two-thirds of all spiral galaxies — including the Milky Way — exhibit these straight bars cutting through their centers. These cosmic structures act as glowing nurseries for newborn stars, and funnel material towards the active core of a galaxy. NGC 2500 is still actively forming new stars, although this process appears to be occurring very unevenly. The upper half of the galaxy — where the spiral arms are slightly better defined — hosts many more star-forming regions than the lower half, as indicated by the bright, dotted islands of light. There is another similarity between NGC 2500 and our home galaxy. Together with Andromeda, Triangulum and many smaller natural satellites, the Milky Way is part of the Local Group of galaxies, a gathering of over 50 galaxies all loosely held together by gravity. NGC 2500 forms a similar group with some of its nearby neighbors, including NGC 2541, NGC 2552, NGC 2537 and the bright, Andromeda-like spiral NGC 2481 (known collectively as the NGC 2841 group). Image Credit: ESA/Hubble/NASA NASA image use policy. NASA Goddard Space Flight Center enables NASA’s mission through four scientific endeavors: Earth Science, Heliophysics, Solar System Exploration, and Astrophysics. Goddard plays a leading role in NASA’s accomplishments by contributing compelling scientific knowledge to advance the Agency’s mission. Follow us on Twitter Like us on Facebook Find us on Instagram

Discovery of a large-scale clumpy structure of the Lynx supercluster at z[similar]1.27

NASA Astrophysics Data System (ADS)

Nakata, Fumiaki; Kodama, Tadayuki; Shimasaku, Kazuhiro; Doi, Mamoru; Furusawa, Hisanori; Hamabe, Masaru; Kimura, Masahiko; Komiyama, Yutaka; Miyazaki, Satoshi; Okamura, Sadanori; Ouchi, Masami; Sekiguchi, Maki; Yagi, Masafumi; Yasuda, Naoki

2004-07-01

We report the discovery of a probable large-scale structure composed of many galaxy clumps around the known twin clusters at z=1.26 and z=1.27 in the Lynx region. Our analysis is based on deep, panoramic, and multi-colour imaging with the Suprime-Cam on the 8.2 m Subaru telescope. We apply a photometric redshift technique to extract plausible cluster members at z˜1.27 down to ˜ M*+2.5. From the 2-D distribution of these photometrically selected galaxies, we newly identify seven candidates of galaxy groups or clusters where the surface density of red galaxies is significantly high (>5σ), in addition to the two known clusters, comprising the largest most distant supercluster ever identified.

The effect of climatic forcing on population synchrony and genetic structuring of the Canadian lynx

PubMed Central

Stenseth, Nils Chr.; Ehrich, Dorothee; Rueness, Eli Knispel; Lingjærde, Ole Chr.; Chan, Kung-Sik; Boutin, Stan; O'Donoghue, Mark; Robinson, David A.; Viljugrein, Hildegunn; Jakobsen, Kjetill S.

2004-01-01

The abundance of Canadian lynx follows 10-year density fluctuations across the Canadian subcontinent. These cyclic fluctuations have earlier been shown to be geographically structured into three climatic regions: the Atlantic, Continental, and Pacific zones. Recent genetic evidence revealed an essentially similar spatial structuring. Introducing a new population model, the “climate forcing of ecological and evolutionary patterns” model, we link the observed ecological and evolutionary patterns. Specifically, we demonstrate that there is greater phase synchrony within climatic zones than between them and show that external climatic forcing may act as a synchronizer. We simulated genetic drift by using data on population dynamics generated by the climate forcing of ecological and evolutionary patterns model, and we demonstrate that the observed genetic structuring can be seen as an emerging property of the spatiotemporal ecological dynamics. PMID:15067131

Pre-layout AC decoupling analysis with Mentor Graphics HyperLynx

NASA Astrophysics Data System (ADS)

Hnatiuc, Mihaela; Iov, Cǎtǎlin J.

2015-02-01

Considerable resources have been used since the humans got interested to discover the world around. Any discovery and science advance was taken tremendously amount of time, money, sometimes lives. All of these define the cost of a discovery, developing process. Getting back to electronics, this field faced in the last 20-30 years, a big boom in terms of technologies and opportunities. Thousands of equipment were developed and placed on the market. The big difference between various competitors is made at the moment by that we call the time to market. A mobile, for instance, has a time to market of around 6 months and the tendency is to have it smaller than that. That means between the concept and the first model sale, no more than 6 months should be passing. That is why new approaches are needed. The one extensively used now is the simulation. We call the simulation virtual prototyping. The virtual prototyping takes into account more than the components only. It takes into account some other project parameters that would affect the final product. Certified tools can handle such analysis. In our paper we present the case of HyperLynx, a concept developed by Mentor Graphics Company, assisting the hardware designer throughout the designing process, from thermal point of view. A test case board was analyzed at the pre-layout stage and the results presented.

Study of the Lynx-Cancer void galaxies. - V. The extremely isolated galaxy UGC 4722

NASA Astrophysics Data System (ADS)

Chengalur, J. N.; Pustilnik, S. A.; Makarov, D. I.; Perepelitsyna, Y. A.; Safonova, E. S.; Karachentsev, I. D.

2015-04-01

We present a detailed study of the extremely isolated Sdm galaxy UGC 4722 (MB = -17.4) located in the nearby Lynx-Cancer void. UGC 4722 is a member of the Catalogue of Isolated Galaxies, and has also been identified as one of the most isolated galaxies in the Local Supercluster. Optical images of the galaxy however show that it has a peculiar morphology with an elongated ˜14 kpc-long plume. New observations with the Russian 6-m telescope (BTA) and the Giant Metrewave Radio Telescope (GMRT) of the ionized and neutral gas in UGC 4722 reveal the second component responsible for the disturbed morphology of the system. This is a small, almost completely destroyed, very gas-rich dwarf (MB = -15.2, M(H I)/LB ˜ 4.3) We estimate the oxygen abundance for both galaxies to be 12 + log (O/H) ˜ 7.5-7.6 which is two to three times lower than what is expected from the luminosity-metallicity relation for similar galaxies in denser environments. The ugr colours of the plume derived from Sloan Digital Sky Survey (SDSS) images are consistent with a simple stellar population with a post starburst age of 0.45-0.5 Gyr. This system hence appears to be the first known case of a minor merger with a prominent tidal feature consisting of a young stellar population.

Thin fused silica shells for high-resolution and large collecting area x-ray telescopes (like Lynx/XRS)

NASA Astrophysics Data System (ADS)

Civitani, M. M.; Hołyszko, J.; Vecchi, G.; Basso, S.; Citterio, O.; Ghigo, M.; Pareschi, G.; Parodi, G.; Incorvaia, S.

2017-09-01

The implementation of an X-ray mission with high imaging capabilities, similar to those achieved with Chandra (< 1 arc second Half Energy Width, HEW), but with a much larger throughput (2.5 m2 effective area @1 keV), represents a compelling request by the scientific community. To this end the Lynx/XRS mission is being studied in USA, with the participation of international partners. In order to figure out the challenging technological task of the mirror fabrication, different approaches are considered, based on monolithic and segmented shells. Starting from the experience done on the glass prototypal shell realized in the past years, the direct polishing of thin (2 mm thick) fused silica monolithic shells is being investigated as a possible solution. A temporary stiffening structure is designed to support the shell during the figuring and polishing operations and to manage the handling up to its integration in the telescope structure. After the grinding and the polishing phases, in order to achieve the required surface accuracy, a final ion beam figuring correction is foreseen. In this paper, we present the technological process and the results achieved so far on a prototypal shell under development.

Gene flow and pathogen transmission among bobcats (Lynx rufus) in a fragmented urban landscape

USGS Publications Warehouse

Lee, Justin S.; Ruell, Emily W.; Boydston, Erin E.; Lyren, Lisa M.; Alonso, Robert S.; Troyer, Jennifer L.; Crooks, Kevin R.; VandeWoude, Sue

2012-01-01

Urbanization can result in the fragmentation of once contiguous natural landscapes into a patchy habitat interspersed within a growing urban matrix. Animals living in fragmented landscapes often have reduced movement among habitat patches because of avoidance of intervening human development, which potentially leads to both reduced gene flow and pathogen transmission between patches. Mammalian carnivores with large home ranges, such as bobcats (Lynx rufus), may be particularly sensitive to habitat fragmentation. We performed genetic analyses on bobcats and their directly transmitted viral pathogen, feline immunodeficiency virus (FIV), to investigate the effects of urbanization on bobcat movement. We predicted that urban development, including major freeways, would limit bobcat movement and result in genetically structured host and pathogen populations. We analysed molecular markers from 106 bobcats and 19 FIV isolates from seropositive animals in urban southern California. Our findings indicate that reduced gene flow between two primary habitat patches has resulted in genetically distinct bobcat subpopulations separated by urban development including a major highway. However, the distribution of genetic diversity among FIV isolates determined through phylogenetic analyses indicates that pathogen genotypes are less spatially structured--exhibiting a more even distribution between habitat fragments. We conclude that the types of movement and contact sufficient for disease transmission occur with enough frequency to preclude structuring among the viral population, but that the bobcat population is structured owing to low levels of effective bobcat migration resulting in gene flow. We illustrate the utility in using multiple molecular markers that differentially detect movement and gene flow between subpopulations when assessing connectivity.

Evolution of puma lentivirus in bobcats (Lynx rufus) and mountain lions (Puma concolor) in North America

USGS Publications Warehouse

Lee, Justin S.; Bevins, Sarah N.; Serieys, Laurel E.K.; Vickers, Winston; Logan, Ken A.; Aldredge, Mat; Boydston, Erin E.; Lyren, Lisa M.; McBride, Roy; Roelke-Parker, Melody; Pecon-Slattery, Jill; Troyer, Jennifer L.; Riley, Seth P.; Boyce, Walter M.; Crooks, Kevin R.; VandeWoude, Sue

2014-01-01

Mountain lions (Puma concolor) throughout North and South America are infected with puma lentivirus clade B (PLVB). A second, highly divergent lentiviral clade, PLVA, infects mountain lions in southern California and Florida. Bobcats (Lynx rufus) in these two geographic regions are also infected with PLVA, and to date, this is the only strain of lentivirus identified in bobcats. We sequenced full-length PLV genomes in order to characterize the molecular evolution of PLV in bobcats and mountain lions. Low sequence homology (88% average pairwise identity) and frequent recombination (1 recombination breakpoint per 3 isolates analyzed) were observed in both clades. Viral proteins have markedly different patterns of evolution; sequence homology and negative selection were highest in Gag and Pol and lowest in Vif and Env. A total of 1.7% of sites across the PLV genome evolve under positive selection, indicating that host-imposed selection pressure is an important force shaping PLV evolution. PLVA strains are highly spatially structured, reflecting the population dynamics of their primary host, the bobcat. In contrast, the phylogeography of PLVB reflects the highly mobile mountain lion, with diverse PLVB isolates cocirculating in some areas and genetically related viruses being present in populations separated by thousands of kilometers. We conclude that PLVA and PLVB are two different viral species with distinct feline hosts and evolutionary histories.

Study of galaxies in the Lynx-Cancer void - VII. New oxygen abundances

NASA Astrophysics Data System (ADS)

Pustilnik, S. A.; Perepelitsyna, Y. A.; Kniazev, A. Y.

2016-11-01

We present new or improved oxygen abundances (O/H) for the nearby Lynx-Cancer void updated galaxy sample. They are obtained via the SAO 6-m telescope spectroscopy (25 objects), or derived from the Sloan Digital Sky Survey spectra (14 galaxies, of which for seven objects O/H values were unknown). For eight galaxies with detected [O III] λ4363 line, O/H values are derived via the direct (Te) method. For the remaining objects, O/H was estimated via semi-empirical and empirical methods. For all accumulated O/H data for 81 galaxies of this void (with 40 of them derived via Te method), their relation `O/H versus MB' is compared with that for similar late-type galaxies from denser environments (the Local Volume `reference sample'). We confirm our previous conclusion derived for a subsample of 48 objects: void galaxies show systematically reduced O/H for the same luminosity with respect to the reference sample, in average by 0.2 dex, or by a factor of ˜1.6. Moreover, we confirm the fraction of ˜20 per cent of strong outliers, with O/H of two to four times lower than the typical values for the `reference' sample. The new data are consistent with the conclusion on the slower evolution of the main void galaxy population. We obtained Hα velocity for the faint optical counterpart of the most gas-rich (M(H I)/LB = 25) void object J0723+3624, confirming its connection with the respective H I blob. For similar extremely gas-rich dwarf J0706+3020, we give a tentative O/H ˜(O/H)⊙/45. In Appendix A, we present the results of calibration of semi-empirical method by Izotov & Thuan and of empirical calibrators by Pilyugin & Thuan and Yin et al. on the sample of ˜150 galaxies from the literature with O/H measured by Te method.

Quantifying home range habitat requirements for bobcats (Lynx rufus) in Vermont, USA

USGS Publications Warehouse

Donovan, T.M.; Freeman, M.; Abouelezz, H.; Royar, Kim; Howard, A.; Mickey, R.

2011-01-01

We demonstrate how home range and habitat use analysis can inform landscape-scale conservation planning for the bobcat, Lynx rufus, in Vermont USA. From 2005 to 2008, we outfitted fourteen bobcats with GPS collars that collected spatially explicit locations from individuals every 4. h for 3-4. months. Kernel home range techniques were used to estimate home range size and boundaries, and to quantify the utilization distribution (UD), which is a spatially explicit, topographic mapping of how different areas within the home range are used. We then used GIS methods to quantify both biotic (e.g. habitat types, stream density) and abiotic (e.g. slope) resources within each bobcat's home range. Across bobcats, upper 20th UD percentiles (core areas) had 18% less agriculture, 42% less development, 26% more bobcat habitat (shrub, deciduous, coniferous forest, and wetland cover types), and 33% lower road density than lower UD percentiles (UD valleys). For each bobcat, we used Akaike's Information Criterion (AIC) to evaluate and compare 24 alternative Resource Utilization Functions (hypotheses) that could explain the topology of the individual's UD. A model-averaged population-level Resource Utilization Function suggested positive responses to shrub, deciduous, coniferous forest, and wetland cover types within 1. km of a location, and negative responses to roads and mixed forest cover types within 1. km of a location. Applying this model-averaged function to each pixel in the study area revealed habitat suitability for bobcats across the entire study area, with suitability scores ranging between -1.69 and 1.44, where higher values were assumed to represent higher quality habitat. The southern Champlain Valley, which contained ample wetland and shrub habitat, was a concentrated area of highly suitable habitat, while areas at higher elevation areas were less suitable. Female bobcat home ranges, on average, had an average habitat suitability score of near 0, indicating that home

Bobcats ( Lynx rufus) as a Model Organism to Investigate the Effects of Roads on Wide-Ranging Carnivores

NASA Astrophysics Data System (ADS)

Litvaitis, John A.; Reed, Gregory C.; Carroll, Rory P.; Litvaitis, Marian K.; Tash, Jeffrey; Mahard, Tyler; Broman, Derek J. A.; Callahan, Catherine; Ellingwood, Mark

2015-06-01

We are using bobcats ( Lynx rufus) as a model organism to examine how roads affect the abundance, distribution, and genetic structure of a wide-ranging carnivore. First, we compared the distribution of bobcat-vehicle collisions to road density and then estimated collision probabilities for specific landscapes using a moving window with road-specific traffic volume. Next, we obtained incidental observations of bobcats from the public, camera-trap detections, and locations of bobcats equipped with GPS collars to examine habitat selection. These data were used to generate a cost-surface map to investigate potential barrier effects of roads. Finally, we have begun an examination of genetic structure of bobcat populations in relation to major road networks. Distribution of vehicle-killed bobcats was correlated with road density, especially state and interstate highways. Collision models suggested that some regions may function as demographic sinks. Simulated movements in the context of the cost-surface map indicated that some major roads may be barriers. These patterns were supported by the genetic structure of bobcats. The sharpest divisions among genetically distinct demes occurred along natural barriers (mountains and large lakes) and in road-dense regions. In conclusion, our study has demonstrated the utility of using bobcats as a model organism to understand the variety of threats that roads pose to a wide-ranging species. Bobcats may also be useful as one of a group of focal species while developing approaches to maintain existing connectivity or mitigate the negative effects of roads.

Bobcats (Lynx rufus) as a Model Organism to Investigate the Effects of Roads on Wide-Ranging Carnivores.

PubMed

Litvaitis, John A; Reed, Gregory C; Carroll, Rory P; Litvaitis, Marian K; Tash, Jeffrey; Mahard, Tyler; Broman, Derek J A; Callahan, Catherine; Ellingwood, Mark

2015-06-01

We are using bobcats (Lynx rufus) as a model organism to examine how roads affect the abundance, distribution, and genetic structure of a wide-ranging carnivore. First, we compared the distribution of bobcat-vehicle collisions to road density and then estimated collision probabilities for specific landscapes using a moving window with road-specific traffic volume. Next, we obtained incidental observations of bobcats from the public, camera-trap detections, and locations of bobcats equipped with GPS collars to examine habitat selection. These data were used to generate a cost-surface map to investigate potential barrier effects of roads. Finally, we have begun an examination of genetic structure of bobcat populations in relation to major road networks. Distribution of vehicle-killed bobcats was correlated with road density, especially state and interstate highways. Collision models suggested that some regions may function as demographic sinks. Simulated movements in the context of the cost-surface map indicated that some major roads may be barriers. These patterns were supported by the genetic structure of bobcats. The sharpest divisions among genetically distinct demes occurred along natural barriers (mountains and large lakes) and in road-dense regions. In conclusion, our study has demonstrated the utility of using bobcats as a model organism to understand the variety of threats that roads pose to a wide-ranging species. Bobcats may also be useful as one of a group of focal species while developing approaches to maintain existing connectivity or mitigate the negative effects of roads.

50 CFR 23.69 - How can I trade internationally in fur skins and fur skin products of bobcat, river otter, Canada...

Code of Federal Regulations, 2014 CFR

2014-10-01

... skins and fur skin products of bobcat, river otter, Canada lynx, gray wolf, and brown bear harvested in... trade internationally in fur skins and fur skin products of bobcat, river otter, Canada lynx, gray wolf... lynx (Lynx canadensis), gray wolf (Canis lupus), and brown bear (Ursus arctos) harvested in the United...

Quantifying home range habitat requirements for bobcats (Lynx rufus) in Vermont, USA

USGS Publications Warehouse

Donovan, Therese; Freeman, Mark; Abouelezz, Hanem; Royar, Kim; Howard, Alan D.; Mickey, R.

2011-01-01

We demonstrate how home range and habitat use analysis can inform landscape-scale conservation planning for the bobcat, Lynx rufus, in Vermont USA. From 2005 to 2008, we outfitted fourteen bobcats with GPS collars that collected spatially explicit locations from individuals every 4 h for 3–4 months. Kernel home range techniques were used to estimate home range size and boundaries, and to quantify the utilization distribution (UD), which is a spatially explicit, topographic mapping of how different areas within the home range are used. We then used GIS methods to quantify both biotic (e.g. habitat types, stream density) and abiotic (e.g. slope) resources within each bobcat’s home range. Across bobcats, upper 20th UD percentiles (core areas) had 18% less agriculture, 42% less development, 26% more bobcat habitat (shrub, deciduous, coniferous forest, and wetland cover types), and 33% lower road density than lower UD percentiles (UD valleys). For each bobcat, we used Akaike’s Information Criterion (AIC) to evaluate and compare 24 alternative Resource Utilization Functions (hypotheses) that could explain the topology of the individual’s UD. A model-averaged population-level Resource Utilization Function suggested positive responses to shrub, deciduous, coniferous forest, and wetland cover types within 1 km of a location, and negative responses to roads and mixed forest cover types within 1 km of a location. Applying this model-averaged function to each pixel in the study area revealed habitat suitability for bobcats across the entire study area, with suitability scores ranging between −1.69 and 1.44, where higher values were assumed to represent higher quality habitat. The southern Champlain Valley, which contained ample wetland and shrub habitat, was a concentrated area of highly suitable habitat, while areas at higher elevation areas were less suitable. Female bobcat home ranges, on average, had an average habitat suitability score of near 0, indicating

50 CFR 23.69 - How can I trade internationally in fur skins and fur skin products of bobcat, river otter, Canada...

Code of Federal Regulations, 2010 CFR

2010-10-01

... skins and fur skin products of bobcat, river otter, Canada lynx, gray wolf, and brown bear? 23.69... skins and fur skin products of bobcat, river otter, Canada lynx, gray wolf, and brown bear? (a) U.S. and...), river otter (Lontra canadensis), and Canada lynx (Lynx canadensis), and the Alaskan populations of gray...

50 CFR 23.69 - How can I trade internationally in fur skins and fur skin products of bobcat, river otter, Canada...

Code of Federal Regulations, 2011 CFR

2011-10-01

... skins and fur skin products of bobcat, river otter, Canada lynx, gray wolf, and brown bear? 23.69... skins and fur skin products of bobcat, river otter, Canada lynx, gray wolf, and brown bear? (a) U.S. and...), river otter (Lontra canadensis), and Canada lynx (Lynx canadensis), and the Alaskan populations of gray...

50 CFR 23.69 - How can I trade internationally in fur skins and fur skin products of bobcat, river otter, Canada...

Code of Federal Regulations, 2013 CFR

2013-10-01

... skins and fur skin products of bobcat, river otter, Canada lynx, gray wolf, and brown bear? 23.69... skins and fur skin products of bobcat, river otter, Canada lynx, gray wolf, and brown bear? (a) U.S. and...), river otter (Lontra canadensis), and Canada lynx (Lynx canadensis), and the Alaskan populations of gray...

Variability in assays used for detection of lentiviral infection in bobcats (Lynx rufus), pumas (Puma concolor), and ocelots (Leopardus pardalis)

USGS Publications Warehouse

Franklin, S.P.; Troyer, J.L.; TerWee, J.A.; Lyren, L.M.; Kays, R.W.; Riley, S.P.D.; Boyce, W.M.; Crooks, K.R.; VandeWoude, S.

2007-01-01

Although lentiviruses similar to feline immunodeficiency virus (FIV) are known to infect numerous felid species, the relative utility of assays used for detecting lentiviral infection has not been compared for many of these hosts. We tested bobcats (Lynx rufus), pumas (Felis concolor), and ocelots (Leopardus pardalis) for exposure to lentivirus using five different assays: puma lentivirus (PLV), African lion lentivirus (LLV), and domestic cat FIV-based immunoblots, a commercially available enzyme-linked immunosorbent assay (ELISA) kit, and nested polymerase chain reaction (PCR). Puma lentivirus immunoblots identified more seropositive individuals than the other antibody-detection assays. The commercial ELISA provided a fair ability to recognize seropositive samples when compared with PLV immunoblot for screening bobcats and ocelots, but not pumas. Polymerase chain reaction identified fewer positive samples than PLV immunoblot for all three species. Immunoblot results were equivalent whether the sample tested was serum, plasma, or whole blood. The results from this study and previous investigations suggest that the PLV immunoblot has the greatest ability to detect reactive samples when screening wild felids of North America and is unlikely to produce false positive results. However, the commercial ELISA kit may provide ap adequate alternative for screening of some species and is more easily adapted to field conditions. ?? Wildlife Disease Association 2007.

Hugoniot Models for Na and LiF from LEOS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Whitley, Heather D.; Wu, Christine J.

2016-10-12

In this document, we provide the Hugoniot for sodium from two models: LEOS table L110 and Lynx table 110. We also provide the Hugoniot for lithium fluoride from LEOS (L2240) and Lynx (2240). The Hugoniot pressures are supplied for temperatures between 338.0 and 1.16×10 9 Kelvin and densities between 0.968 and 11.5 g/cc. These LEOS models were developed by the quotidian EOS methodology, which is a widely used and robust method for producing tabular EOS data. Tables list the model data for LEOS 110, Lynx 110, LEOS 2240, and Lynx 2240. The Lynx models follow the same methodology as themore » LEOS models; however, the Purgatorio average-atom DFT code was used to compute the electron thermal part of the EOS. The models for Lynx are only listed at high compression due to known issues with the Lynx library at lower pressures.« less

Serum chemistry, hematologic, and post-mortem findings in free-ranging bobcats (Lynx rufus) with notoedric mange

USGS Publications Warehouse

Serieys, Laurel E.K.; Foley, Janet; Owens, Sean; Woods, Leslie; Boydston, Erin E.; Lyren, Lisa M.; Poppenga, Robert H.; Clifford, Deana L.; Stephenson, Nicole; Rudd, Jaime; Riley, Seth P.D.

2013-01-01

Notoedric mange was responsible for a population decline of bobcats (Lynx rufus) in 2 Southern California counties from 2002–2006 and is now reported to affect bobcats in Northern and Southern California. With this study we document clinical laboratory and necropsy findings for bobcats with mange. Bobcats in this study included free-ranging bobcats with mange (n = 34), a control group of free-ranging bobcats without mange (n = 11), and a captive control group of bobcats without mange (n = 19). We used 2 control groups to evaluate potential anomalies due to capture stress or diet. Free-ranging healthy and mange-infected bobcats were trapped or salvaged. Animals were tested by serum biochemistry, complete blood count, urine protein and creatinine, body weight, necropsy, and assessment for anticoagulant rodenticide residues in liver tissue. Bobcats with severe mange were emaciated, dehydrated, and anemic with low serum creatinine, hyperphosphatemia, hypoglycemia, hypernatremia, and hyperchloremia, and sometimes septicemic when compared to control groups. Liver enzymes and leukocyte counts were elevated in free-ranging, recently captured bobcats whether or not they were infested with mange, suggesting capture stress. Bobcats with mange had lower levels of serum cholesterol, albumin, globulin, and total protein due to protein loss likely secondary to severe dermatopathy. Renal insufficiency was unlikely in most cases, as urine protein:creatinine ratios were within normal limits. A primary gastrointestinal loss of protein or blood was possible in a few cases, as evidenced by elevated blood urea nitrogen, anemia, intestinal parasitism, colitis, gastric hemorrhage, and melena. The prevalence of exposure to anticoagulant rodenticides was 100% (n = 15) in bobcats with mange. These findings paint a picture of debilitating, multisystemic disease with infectious and toxic contributing factors that can progress to death in individuals and potential decline in populations.

Evolution of puma lentivirus in bobcats (Lynx rufus) and mountain lions (Puma concolor) in North America.

PubMed

Lee, Justin S; Bevins, Sarah N; Serieys, Laurel E K; Vickers, Winston; Logan, Ken A; Aldredge, Mat; Boydston, Erin E; Lyren, Lisa M; McBride, Roy; Roelke-Parker, Melody; Pecon-Slattery, Jill; Troyer, Jennifer L; Riley, Seth P; Boyce, Walter M; Crooks, Kevin R; VandeWoude, Sue

2014-07-01

Mountain lions (Puma concolor) throughout North and South America are infected with puma lentivirus clade B (PLVB). A second, highly divergent lentiviral clade, PLVA, infects mountain lions in southern California and Florida. Bobcats (Lynx rufus) in these two geographic regions are also infected with PLVA, and to date, this is the only strain of lentivirus identified in bobcats. We sequenced full-length PLV genomes in order to characterize the molecular evolution of PLV in bobcats and mountain lions. Low sequence homology (88% average pairwise identity) and frequent recombination (1 recombination breakpoint per 3 isolates analyzed) were observed in both clades. Viral proteins have markedly different patterns of evolution; sequence homology and negative selection were highest in Gag and Pol and lowest in Vif and Env. A total of 1.7% of sites across the PLV genome evolve under positive selection, indicating that host-imposed selection pressure is an important force shaping PLV evolution. PLVA strains are highly spatially structured, reflecting the population dynamics of their primary host, the bobcat. In contrast, the phylogeography of PLVB reflects the highly mobile mountain lion, with diverse PLVB isolates cocirculating in some areas and genetically related viruses being present in populations separated by thousands of kilometers. We conclude that PLVA and PLVB are two different viral species with distinct feline hosts and evolutionary histories. Importance: An understanding of viral evolution in natural host populations is a fundamental goal of virology, molecular biology, and disease ecology. Here we provide a detailed analysis of puma lentivirus (PLV) evolution in two natural carnivore hosts, the bobcat and mountain lion. Our results illustrate that PLV evolution is a dynamic process that results from high rates of viral mutation/recombination and host-imposed selection pressure. Copyright © 2014, American Society for Microbiology. All Rights Reserved.

Overview of forest carnivore survey efforts in the Bitterroot Mountains

Treesearch

Kerry R. Foresman

2000-01-01

Disturbance of forested habitats through natural or man-made causes is thought to adversely affect medium-sized carnivores such as the American marten (Martes americana), fisher (Martes pennanti), wolverine (Gulo gulo), and lynx (Lynx lynx). In order to recognize these impacts it is necessary...

[Early sibling aggression in mammals and its hormonal correlates].

PubMed

Antonevich, A L; Naĭdenko, S V

2007-01-01

Early sibling aggression is a widespread phenomenon in birds. Ornithologists distinguish species with "obligate" and "facultative" siblicide. Sibling aggression was described in some mammal species: the domestic pig (Sus scrofa), the spotted hyena (Crocuta crocuta), the Eurasian lynx (Lynx lynx), and the Iberian lynx (L. par-dinus). In all of them, sibling aggression corresponds well with the "facultative" siblicide model in birds. Sibling aggression was observed at the age of 36-64 days in both lynx species. It is usually restricted to a single fight and can change the hierarchical structure and growth rate of the kittens. In the spotted hyena and the domestic pig, the frequency and intensity of aggressive interactions between siblings are strongest during the first days of postnatal ontogeny and then decrease gradually. The newborns of these species are much developed than newborn lynx kittens. Usually adult lynx females, in contrast to hyenas and pigs, try to stop sibling fights. This is probably related to the larger parental investment at the time of the fight in lynxes (a kitten's body weight is about 10% of the mother's) than in pigs (0.5%) and hyenas (1.9%). Sibling aggression in spotted hyenas could be related to the high level of androstenedione and is not related to testosterone concentration. In the Eurasian lynx, female sibs attack their littermates slightly more often than male sibs do, and sibling aggression is not testosterone-dependent. Hormones secreted by the adrenal glands may play an important role in this phenomenon. The data available so far, however, do not positively confirm the presence of hormonal trigger effects in mammal sibling aggression.

Comparison of proposed survey procedures for detection of forest carnivores

Treesearch

Kerry R. Foresman; Dean E. Pearson

1998-01-01

American marten (Martes americana), fisher (M. pennanti), wolverine (Gulo gulo), and lynx (Lynx lynx) are forest carnivores believed threatened by disturbance of late-successional forests. To manage forested ecosystems for these species, effective methods for their detection must be available. Recently, the U.S. Forest Service proposed standardized survey procedures...

Selective Predation of a Stalking Predator on Ungulate Prey

PubMed Central

Heurich, Marco; Zeis, Klara; Küchenhoff, Helmut; Müller, Jörg; Belotti, Elisa; Bufka, Luděk; Woelfing, Benno

2016-01-01

Prey selection is a key factor shaping animal populations and evolutionary dynamics. An optimal forager should target prey that offers the highest benefits in terms of energy content at the lowest costs. Predators are therefore expected to select for prey of optimal size. Stalking predators do not pursue their prey long, which may lead to a more random choice of prey individuals. Due to difficulties in assessing the composition of available prey populations, data on prey selection of stalking carnivores are still scarce. We show how the stalking predator Eurasian lynx (Lynx lynx) selects prey individuals based on species identity, age, sex and individual behaviour. To address the difficulties in assessing prey population structure, we confirm inferred selection patterns by using two independent data sets: (1) data of 387 documented kills of radio-collared lynx were compared to the prey population structure retrieved from systematic camera trapping using Manly’s standardized selection ratio alpha and (2) data on 120 radio-collared roe deer were analysed using a Cox proportional hazards model. Among the larger red deer prey, lynx selected against adult males—the largest and potentially most dangerous prey individuals. In roe deer lynx preyed selectively on males and did not select for a specific age class. Activity during high risk periods reduced the risk of falling victim to a lynx attack. Our results suggest that the stalking predator lynx actively selects for size, while prey behaviour induces selection by encounter and stalking success rates. PMID:27548478

Influence of forest structure on the abundance of snowshoe hares in western Wyoming

Treesearch

Nathan D. Berg; Eric M. Gese; John R. Squires; Lise M. Aubry

2012-01-01

Snowshoe hares (Lepus americanus) are a primary prey species for Canada lynx (Lynx canadensis) in western North America. Lynx management plans require knowledge of potential prey distribution and abundance in the western United States. Whether even-aged regenerating forests or multi-storied forests contain more snowshoe hares is currently unknown. During 2006-...

Disturbance ecology of North American boreal forests and associated northern mixed/subalpine forests [Chapter 3

Treesearch

James K. Agee

2000-01-01

Disturbance dynamics differ in the three subregions of the North American boreal forest (taiga, western United States, and eastern United States) where lynx are found, resulting in a range of potential effects on lynx populations. Fire severity tends to be high in most of the forest types where lynx habitat occurs, although subsequent succession will differ...

Selecting habitat to survive: the impact of road density on survival in a large carnivore.

PubMed

Basille, Mathieu; Van Moorter, Bram; Herfindal, Ivar; Martin, Jodie; Linnell, John D C; Odden, John; Andersen, Reidar; Gaillard, Jean-Michel

2013-01-01

Habitat selection studies generally assume that animals select habitat and food resources at multiple scales to maximise their fitness. However, animals sometimes prefer habitats of apparently low quality, especially when considering the costs associated with spatially heterogeneous human disturbance. We used spatial variation in human disturbance, and its consequences on lynx survival, a direct fitness component, to test the Hierarchical Habitat Selection hypothesis from a population of Eurasian lynx Lynx lynx in southern Norway. Data from 46 lynx monitored with telemetry indicated that a high proportion of forest strongly reduced the risk of mortality from legal hunting at the home range scale, while increasing road density strongly increased such risk at the finer scale within the home range. We found hierarchical effects of the impact of human disturbance, with a higher road density at a large scale reinforcing its negative impact at a fine scale. Conversely, we demonstrated that lynx shifted their habitat selection to avoid areas with the highest road densities within their home ranges, thus supporting a compensatory mechanism at fine scale enabling lynx to mitigate the impact of large-scale disturbance. Human impact, positively associated with high road accessibility, was thus a stronger driver of lynx space use at a finer scale, with home range characteristics nevertheless constraining habitat selection. Our study demonstrates the truly hierarchical nature of habitat selection, which aims at maximising fitness by selecting against limiting factors at multiple spatial scales, and indicates that scale-specific heterogeneity of the environment is driving individual spatial behaviour, by means of trade-offs across spatial scales.

Population and genetic outcomes 20 years after reintroducing bobcats (Lynx rufus) to Cumberland Island, Georgia USA

USGS Publications Warehouse

Diefenbach, Duane R.; Hansen, Leslie A.; Bohling, Justin H.; Miller-Butterworth, Cassandra

2015-01-01

In 1988–1989, 32 bobcats Lynx rufus were reintroduced to Cumberland Island (CUIS), Georgia, USA, from which they had previously been extirpated. They were monitored intensively for 3 years immediately post-reintroduction, but no estimation of the size or genetic diversity of the population had been conducted in over 20 years since reintroduction. We returned to CUIS in 2012 to estimate abundance and effective population size of the present-day population, as well as to quantify genetic diversity and inbreeding. We amplified 12 nuclear microsatellite loci from DNA isolated from scats to establish genetic profiles to identify individuals. We used spatially explicit capture–recapture population estimation to estimate abundance. From nine unique genetic profiles, we estimate a population size of 14.4 (SE = 3.052) bobcats, with an effective population size (Ne) of 5–8 breeding individuals. This is consistent with predictions of a population viability analysis conducted at the time of reintroduction, which estimated the population would average 12–13 bobcats after 10 years. We identified several pairs of related bobcats (parent-offspring and full siblings), but ~75% of the pairwise comparisons were typical of unrelated individuals, and only one individual appeared inbred. Despite the small population size and other indications that it has likely experienced a genetic bottleneck, levels of genetic diversity in the CUIS bobcat population remain high compared to other mammalian carnivores. The reintroduction of bobcats to CUIS provides an opportunity to study changes in genetic diversity in an insular population without risk to this common species. Opportunities for natural immigration to the island are limited; therefore, continued monitoring and supplemental bobcat reintroductions could be used to evaluate the effect of different management strategies to maintain genetic diversity and population viability. The successful reintroduction and maintenance of a

Strategic Integration of Multiple Bioinformatics Resources for System Level Analysis of Biological Networks.

PubMed

D'Souza, Mark; Sulakhe, Dinanath; Wang, Sheng; Xie, Bing; Hashemifar, Somaye; Taylor, Andrew; Dubchak, Inna; Conrad Gilliam, T; Maltsev, Natalia

2017-01-01

Recent technological advances in genomics allow the production of biological data at unprecedented tera- and petabyte scales. Efficient mining of these vast and complex datasets for the needs of biomedical research critically depends on a seamless integration of the clinical, genomic, and experimental information with prior knowledge about genotype-phenotype relationships. Such experimental data accumulated in publicly available databases should be accessible to a variety of algorithms and analytical pipelines that drive computational analysis and data mining.We present an integrated computational platform Lynx (Sulakhe et al., Nucleic Acids Res 44:D882-D887, 2016) ( http://lynx.cri.uchicago.edu ), a web-based database and knowledge extraction engine. It provides advanced search capabilities and a variety of algorithms for enrichment analysis and network-based gene prioritization. It gives public access to the Lynx integrated knowledge base (LynxKB) and its analytical tools via user-friendly web services and interfaces. The Lynx service-oriented architecture supports annotation and analysis of high-throughput experimental data. Lynx tools assist the user in extracting meaningful knowledge from LynxKB and experimental data, and in the generation of weighted hypotheses regarding the genes and molecular mechanisms contributing to human phenotypes or conditions of interest. The goal of this integrated platform is to support the end-to-end analytical needs of various translational projects.

Mesopredator behavioral response to olfactory signals of an apex predator.

PubMed

Wikenros, Camilla; Jarnemo, Anders; Frisén, Marielle; Kuijper, Dries P J; Schmidt, Krzysztof

2017-01-01

Olfactory signals constitute an important mechanism in interspecific interactions, but little is known regarding their role in communication between predator species. We analyzed the behavioral responses of a mesopredator, the red fox ( Vulpes vulpes ), to an olfactory cue (scat) of an apex predator, the lynx ( Lynx lynx ) in Białowieża Primeval Forest, Poland, using video camera traps. Red fox visited sites with scats more often than expected and the duration of their visits was longer at scat sites than at control sites (no scat added). Vigilant behavior, sniffing and scent marking (including over-marking) occurred more often at scat sites compared to control sites, where foxes mainly passed by. Vigilance was most pronounced during the first days of the recordings. Red fox behavior was also influenced by foxes previously visiting scat sites. They sniffed and scent marked (multiple over-marking) more frequently when the lynx scat had been over-marked previously by red fox. Fox visits to lynx scats may be seen as a trade-off between obtaining information on a potential food source (prey killed by lynx) and the potential risk of predation by an apex predator.

First evidence of hemoplasma infection in free-ranging Namibian cheetahs (Acinonyx jubatus).

PubMed

Krengel, Annika; Meli, Marina L; Cattori, Valentino; Wachter, Bettina; Willi, Barbara; Thalwitzer, Susanne; Melzheimer, Jörg; Hofer, Heribert; Lutz, Hans; Hofmann-Lehmann, Regina

2013-03-23

Infections with feline hemotropic mycoplasmas (hemoplasmas) have been documented in domestic cats and free-ranging feline species with high prevalences in Iberian lynxes (Lynx pardinus), Eurasian lynxes (Lynx lynx), European wildcats (Felis silvestris silvestris), African lions (Panthera leo) in Tanzania and domestic cats in South Africa. The prevalence of hemoplasmas has not yet been investigated in free-ranging felids in southern Africa. In this study we screened 73 blood samples from 61 cheetahs in central Namibia for the presence of hemoplasmas using quantitative real-time PCR. One of the cheetahs tested PCR-positive. Phylogenetic analysis based on partial sequencing of the 16S rRNA and RNAse P genes revealed that the isolate belongs to the Mycoplasma haemofelis/haemocanis group. This is the first molecular evidence of a hemoplasma infection in a free-ranging cheetah. Copyright © 2012 Elsevier B.V. All rights reserved.

Description and life-cycle of Taenia lynciscapreoli sp. n. (Cestoda, Cyclophyllidea)

PubMed Central

Haukisalmi, Voitto; Konyaev, Sergey; Lavikainen, Antti; Isomursu, Marja; Nakao, Minoru

2016-01-01

Abstract A new species of tapeworm, Taenia lynciscapreoli sp. n. (Cestoda, Cyclophyllidea), is described from the Eurasian lynx (Lynx lynx), the main definitive host, and the roe deer (Capreolus capreolus and Capreolus pygargus), the main intermediate hosts, from Finland and Russia (Siberia and the Russian Far East). The new species was found once also in the wolf (Canis lupus) and the Eurasian elk/moose (Alces alces), representing accidental definitive and intermediate hosts, respectively. The conspecificity of adult specimens and metacestodes of Taenia lynciscapreoli sp. n. in various host species and regions, and their distinction from related species of Taenia, was confirmed by partial nucleotide sequences of the mitochondrial cytochrome c oxidase subunit 1 gene. Morphologically, Taenia lynciscapreoli sp. n. can be separated unambiguously from all other species of Taenia by the shape of its large rostellar hooks, particularly the characteristically short, wide and strongly curved blade. If the large rostellar hooks are missing, Taenia lynciscapreoli may be separated from related species by a combination of morphological features of mature proglottids. It is suggested that Taenia lynciscapreoli has been present in published materials concerning the tapeworms of Lynx lynx and Lynx pardinus in Europe, but has been misidentified as Taenia pisiformis (Bloch, 1780). Taenia lynciscapreoli sp. n. has not been found in lynx outside the range of roe deer, suggesting a transmission pathway based on a specific predator–prey relationship. The present study applies a novel, simple approach to compare qualitative interspecific differences in the shape of rostellar hooks. PMID:27199592

Responses of a top and a meso predator and their prey to moon phases.

PubMed

Penteriani, Vincenzo; Kuparinen, Anna; del Mar Delgado, Maria; Palomares, Francisco; López-Bao, José Vicente; Fedriani, José María; Calzada, Javier; Moreno, Sacramento; Villafuerte, Rafael; Campioni, Letizia; Lourenço, Rui

2013-11-01

We compared movement patterns and rhythms of activity of a top predator, the Iberian lynx Lynx pardinus, a mesopredator, the red fox Vulpes vulpes, and their shared principal prey, the rabbit Oryctolagus cuniculus, in relation to moon phases. Because the three species are mostly nocturnal and crepuscular, we hypothesized that the shared prey would reduce its activity at most risky moon phases (i.e. during the brightest nights), but that fox, an intraguild prey of lynx, would avoid lynx activity peaks at the same time. Rabbits generally moved further from their core areas on darkest nights (i.e. new moon), using direct movements which minimize predation risk. Though rabbits responded to the increased predation risk by reducing their activity during the full moon, this response may require several days, and the moon effect we observed on the rabbits had, therefore, a temporal gap. Lynx activity patterns may be at least partially mirroring rabbit activity: around new moons, when rabbits moved furthest and were more active, lynxes reduced their travelling distances and their movements were concentrated in the core areas of their home ranges, which generally correspond to areas of high density of rabbits. Red foxes were more active during the darkest nights, when both the conditions for rabbit hunting were the best and lynxes moved less. On the one hand, foxes increased their activity when rabbits were further from their core areas and moved with more discrete displacements; on the other hand, fox activity in relation to the moon seemed to reduce dangerous encounters with its intraguild predator.

The changing contribution of top-down and bottom-up limitation of mesopredators during 220 years of land use and climate change.

PubMed

Pasanen-Mortensen, Marianne; Elmhagen, Bodil; Lindén, Harto; Bergström, Roger; Wallgren, Märtha; van der Velde, Ype; Cousins, Sara A O

2017-05-01

Apex predators may buffer bottom-up driven ecosystem change, as top-down suppression may dampen herbivore and mesopredator responses to increased resource availability. However, theory suggests that for this buffering capacity to be realized, the equilibrium abundance of apex predators must increase. This raises the question: will apex predators maintain herbivore/mesopredator limitation, if bottom-up change relaxes resource constraints? Here, we explore changes in mesopredator (red fox Vulpes vulpes) abundance over 220 years in response to eradication and recovery of an apex predator (Eurasian lynx Lynx lynx), and changes in land use and climate which are linked to resource availability. A three-step approach was used. First, recent data from Finland and Sweden were modelled to estimate linear effects of lynx density, land use and winter temperature on fox density. Second, lynx density, land use and winter temperature was estimated in a 22 650 km 2 focal area in boreal and boreo-nemoral Sweden in the years 1830, 1920, 2010 and 2050. Third, the models and estimates were used to project historic and future fox densities in the focal area. Projected fox density was lowest in 1830 when lynx density was high, winters cold and the proportion of cropland low. Fox density peaked in 1920 due to lynx eradication, a mesopredator release boosted by favourable bottom-up changes - milder winters and cropland expansion. By 2010, lynx recolonization had reduced fox density, but it remained higher than in 1830, partly due to the bottom-up changes. Comparing 1830 to 2010, the contribution of top-down limitation decreased, while environment enrichment relaxed bottom-up limitation. Future scenarios indicated that by 2050, lynx density would have to increase by 79% to compensate for a projected climate-driven increase in fox density. We highlight that although top-down limitation in theory can buffer bottom-up change, this requires compensatory changes in apex predator abundance

Critical-angle transmission grating technology development for high resolving power soft x-ray spectrometers on Arcus and Lynx

NASA Astrophysics Data System (ADS)

Heilmann, Ralf K.; Bruccoleri, Alexander R.; Song, Jungki; Kolodziejczak, Jeffery; Gaskin, Jessica A.; O'Dell, Stephen L.; Cheimetz, Peter; Hertz, Edward; Smith, Randall K.; Burwitz, Vadim; Hartner, Gisela; La Caria, Marlis-Madeleine; Schattenburg, Mark L.

2017-08-01

Soft x-ray spectroscopy with high resolving power (R = λ/Δλ) and large effective area (A) addresses numerous unanswered science questions about the physical laws that lead to the structure of our universe. In the soft x-ray band R > 1000 can currently only be achieved with diffraction grating-based spectroscopy. Criticalangle transmission (CAT) gratings combine the advantages of blazed reflection gratings (high efficiency, use of higher diffraction orders) with those of conventional transmission gratings (relaxed alignment tolerances and temperature requirements, transparent at higher energies, low mass), resulting in minimal mission resource requirements, while greatly improving figures of merit. Diffraction efficiency > 33% and R > 10, 000 have been demonstrated for CAT gratings. Last year the technology has been certified at Technology Readiness Level 4 based on a probe class mission concept. The Explorer-scale (A > 450 cm2 , R > 2500) grating spectroscopy Arcus mission can be built with today's CAT grating technology and has been selected in the current Explorer round for a Phase A concept study. Its figure of merit for the detection of weak absorption lines will be an order of magnitude larger than current instruments on Chandra and XMM-Newton. Further CAT grating technology development and improvements in the angular resolution of x-ray optics can provide another order of magnitude improvement in performance, as is envisioned for the X-ray Surveyor/Lynx mission concept currently under development for input into the 2020 Decadal Survey. For Arcus we have tested CAT gratings in a spectrometer setup in combination with silicon pore optics (SPO) and obtained resolving power results that exceed Arcus requirements before and after environmental testing of the gratings. We have recently fabricated the largest (32 mm x 32 mm) CAT gratings to date, and plan to increase grating size further. We mounted two of these large gratings to frames and aligned them in the

Top predators, mesopredators and their prey: interference ecosystems along bioclimatic productivity gradients.

PubMed

Elmhagen, B; Ludwig, G; Rushton, S P; Helle, P; Lindén, H

2010-07-01

1. The Mesopredator Release Hypothesis (MRH) suggests that top predator suppression of mesopredators is a key ecosystem function with cascading impacts on herbivore prey, but it remains to be shown that this top-down cascade impacts the large-scale structure of ecosystems. 2. The Exploitation Ecosystems Hypothesis (EEH) predicts that regional ecosystem structures are determined by top-down exploitation and bottom-up productivity. In contrast to MRH, EEH assumes that interference among predators has a negligible impact on the structure of ecosystems with three trophic levels. 3. We use the recolonization of a top predator in a three-level boreal ecosystem as a natural experiment to test if large-scale biomass distributions and population trends support MRH. Inspired by EEH, we also test if top-down interference and bottom-up productivity impact regional ecosystem structures. 4. We use data from the Finnish Wildlife Triangle Scheme which has monitored top predator (lynx, Lynx lynx), mesopredator (red fox, Vulpes vulpes) and prey (mountain hare, Lepus timidus) abundance for 17 years in a 200 000 km(2) study area which covers a distinct productivity gradient. 5. Fox biomass was lower than expected from productivity where lynx biomass was high, whilst hare biomass was lower than expected from productivity where fox biomass was high. Hence, where interference controlled fox abundance, lynx had an indirect positive impact on hare abundance as predicted by MRH. The rates of change indicated that lynx expansion gradually suppressed fox biomass. 6. Lynx status caused shifts between ecosystem structures. In the 'interference ecosystem', lynx and hare biomass increased with productivity whilst fox biomass did not. In the 'mesopredator release ecosystem', fox biomass increased with productivity but hare biomass did not. Thus, biomass controlled top-down did not respond to changes in productivity. This fulfils a critical prediction of EEH. 7. We conclude that the cascade

Antibody Detection and Molecular Characterization of Toxoplasma gondii from Bobcats (Lynx rufus), Domestic Cats (Felis catus), and Wildlife from Minnesota, USA.

PubMed

Verma, Shiv K; Minicucci, Larissa; Murphy, Darby; Carstensen, Michelle; Humpal, Carolin; Wolf, Paul; Calero-Bernal, Rafael; Cerqueira-Cézar, Camila K; Kwok, Oliver C H; Su, Chunlei; Hill, Dolores; Dubey, Jitender P

2016-09-01

Little is known of the epidemiology of toxoplasmosis in Minnesota. Here, we evaluated Toxoplasma gondii infection in 50 wild bobcats (Lynx rufus) and 75 other animals on/near 10 cattle farms. Antibodies to T. gondii were assayed in serum samples or tissue fluids by the modified agglutination test (MAT, cut-off 1:25). Twenty nine of 50 bobcats and 15 of 41 wildlife trapped on the vicinity of 10 farms and nine of 16 adult domestic cats (Felis catus) and six of 14 domestic dogs resident on farms were seropositive. Toxoplasma gondii oocysts were not found in feces of any felid. Tissues of all seropositive wild animals trapped on the farm were bioassayed in mice and viable T. gondii was isolated from two badgers (Taxidea taxus), two raccoons (Procyon lotor), one coyote (Canis latrans), and one opossum (Didelphis virginiana). All six T. gondii isolates were further propagated in cell culture. Multi-locus PCR-RFLP genotyping using 10 markers (SAG1, SAG2 (5'-3'SAG2, and alt.SAG2), SAG3, BTUB, GRA6, c22-8, c29-2, L358, PK1, and Apico), and DNA from cell culture derived tachyzoites revealed three genotypes; #5 ToxoDataBase (1 coyote, 1 raccoon), #1 (1 badger, 1 raccoon, 1 opossum), and #2 (1 badger). This is the first report of T. gondii prevalence in domestic cats and in bobcats from Minnesota, and the first isolation of viable T. gondii from badger. Published 2016. This article is a U.S. Government work and is in the public domain in the USA.

78 FR 59429 - Endangered and Threatened Wildlife and Plants; Revised Designation of Critical Habitat for the...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-09-26

...We, the U.S. Fish and Wildlife Service, propose to designate revised critical habitat for the contiguous U.S. distinct population segment (DPS) of the Canada lynx under the Endangered Species Act of 1973, as amended, and to revise the boundary of the Canada lynx DPS. These proposed revisions fulfill our obligations under two settlement agreements. The revised critical habitat proposed rule also addresses issues raised by two courts in 2010. If we finalize this rule as proposed, it would extend the Endangered Species Act's protections to the Canada lynx wherever it occurs in the contiguous United States, including New Mexico, and it would revise this species' critical habitat. The effect of this regulation is to conserve the Canada lynx and its habitats in the contiguous United States under the Endangered Species Act.

Landscape permeability for large carnivores in Washington: a geographic information system weighted-distance and least-cost corridor assessment.

Treesearch

Peter H. Singleton; William L. Gaines; John F. Lehmkuhl

2002-01-01

We conducted a regional-scale evaluation of landscape permeability for large carnivores in Washington and adjacent portions of British Columbia and Idaho. We developed geographic information system based landscape permeability models for wolves (Canis lupus), wolverine (Gulo gulo), lynx (Lynx canadensis),...

Use of non-invasive genetics to generate core-area population estimates of a threatened predator in the Superior National Forest, USA

USGS Publications Warehouse

Barber-Meyer, Shannon; Ryan, Daniel; Grosshuesch, David; Catton, Timothy; Malick-Wahls, Sarah

2018-01-01

core areas and averaged 52.3 (SD=8.3, range=43-59) during 2015-2017 in the larger core areas. We found no evidence for a decrease or increase in abundance during either period. Lynx density estimates were approximately 7-10 times lower than densities of lynx in northern populations at the low of the snowshoe hare (Lepus americanus) population cycle. To our knowledge, our results are the first attempt to estimate abundance, trend and density of lynx in Minnesota using non-invasive genetic capture-mark-recapture. Estimates such as ours provide useful benchmarks for future comparisons by providing a context with which to assess 1) potential changes in forest management that may affect lynx recovery and conservation, and 2) possible effects of climate change on the depth, density, and duration of annual snow cover and correspondingly, potential effects on snowshoe hares as well.

Life Tracks Series.

ERIC Educational Resources Information Center

Brynildson, Inga

Presented are descriptions of and information about various endangered species in Wisconsin. They include: the timber wolf (Canis lupus lycaon); Forester's tern (Sterna forsteri); the Canada lynx (Lynx canadensis); Higgins' eye pearly mussel (Lampsilis higginsii); the piping plover (Charadrius melodus); the osprey (Pandion haliaetus); the…

Hunting-mediated predator facilitation and superadditive mortality in a European ungulate.

PubMed

Gehr, Benedikt; Hofer, Elizabeth J; Pewsner, Mirjam; Ryser, Andreas; Vimercati, Eric; Vogt, Kristina; Keller, Lukas F

2018-01-01

Predator-prey theory predicts that in the presence of multiple types of predators using a common prey, predator facilitation may result as a consequence of contrasting prey defense mechanisms, where reducing the risk from one predator increases the risk from the other. While predator facilitation is well established in natural predator-prey systems, little attention has been paid to situations where human hunters compete with natural predators for the same prey. Here, we investigate hunting-mediated predator facilitation in a hunter-predator-prey system. We found that hunter avoidance by roe deer ( Capreolus capreolus ) exposed them to increase predation risk by Eurasian lynx ( Lynx lynx ). Lynx responded by increasing their activity and predation on deer, providing evidence that superadditive hunting mortality may be occurring through predator facilitation. Our results reveal a new pathway through which human hunters, in their role as top predators, may affect species interactions at lower trophic levels and thus drive ecosystem processes.

Isolation and Genetic Characterization of Toxoplasma gondii from Black Bears (Ursus americanus), Bobcats (Lynx rufus), and Feral Cats (Felis catus) from Pennsylvania.

PubMed

Dubey, Jitender P; Verma, Shiv K; Calero-Bernal, Rafael; Cassinelli, Ana B; Kwok, Oliver C H; Van Why, Kyle; Su, Chunlei; Humphreys, Jan G

2015-01-01

Toxoplasma gondii infects virtually all warm-blooded hosts worldwide. Recently, attention has been focused on the genetic diversity of the parasite to explain its pathogenicity in different hosts. It has been hypothesized that interaction between feral and domestic cycles of T. gondii may increase unusual genotypes in domestic cats and facilitate transmission of potentially more pathogenic genotypes to humans, domestic animals, and wildlife. In the present study, we tested black bear (Ursus americanus), bobcat (Lynx rufus), and feral cat (Felis catus) from the state of Pennsylvania for T. gondii infection. Antibodies to T. gondii were found in 32 (84.2%) of 38 bears, both bobcats, and 2 of 3 feral cats tested by the modified agglutination test (cut off titer 1:25). Hearts from seropositive animals were bioassayed in mice, and viable T. gondii was isolated from 3 of 32 bears, 2 of 2 bobcats, and 2 of 3 feral cats. DNA isolated from culture-derived tachyzoites of these isolates was characterized using multilocus PCR-RFLP markers. Three genotypes were revealed, including ToxoDB PCR-RFLP genotype #1 or #3 (Type II, 1 isolate), #5 (Type 12, 3 isolates), and #216 (3 isolates), adding to the evidence of genetic diversity of T. gondii in wildlife in Pennsylvania. Pathogenicity of 3 T. gondii isolates (all #216, 1 from bear, and 2 from feral cat) was determined in outbred Swiss Webster mice; all three were virulent causing 100% mortality. Results indicated that highly mouse pathogenic strains of T. gondii are circulating in wildlife, and these strains may pose risk to infect human through consuming of game meat. Published 2014. This article is a U.S. Government work and is in the public domain in the USA.

The Influence of Snowmobile Trails on Coyote Movements during Winter in High-Elevation Landscapes

PubMed Central

Gese, Eric M.; Dowd, Jennifer L. B.; Aubry, Lise M.

2013-01-01

Competition between sympatric carnivores has long been of interest to ecologists. Increased understanding of these interactions can be useful for conservation planning. Increased snowmobile traffic on public lands and in habitats used by Canada lynx (Lynx canadensis) remains controversial due to the concern of coyote (Canis latrans) use of snowmobile trails and potential competition with lynx. Determining the variables influencing coyote use of snowmobile trails has been a priority for managers attempting to conserve lynx and their critical habitat. During 2 winters in northwest Wyoming, we backtracked coyotes for 265 km to determine how varying snow characteristics influenced coyote movements; 278 km of random backtracking was conducted simultaneously for comparison. Despite deep snow (>1 m deep), radio-collared coyotes persisted at high elevations (>2,500 m) year-round. All coyotes used snowmobile trails for some portion of their travel. Coyotes used snowmobile trails for 35% of their travel distance (random: 13%) for a mean distance of 149 m (random: 59 m). Coyote use of snowmobile trails increased as snow depth and penetrability off trails increased. Essentially, snow characteristics were most influential on how much time coyotes spent on snowmobile trails. In the early months of winter, snow depth was low, yet the snow column remained dry and the coyotes traveled off trails. As winter progressed and snow depth increased and snow penetrability increased, coyotes spent more travel distance on snowmobile trails. As spring approached, the snow depth remained high but penetrability decreased, hence coyotes traveled less on snowmobile trails because the snow column off trail was more supportive. Additionally, coyotes traveled closer to snowmobile trails than randomly expected and selected shallower snow when traveling off trails. Coyotes also preferred using snowmobile trails to access ungulate kills. Snow compaction from winter recreation influenced coyote

The influence of snowmobile trails on coyote movements during winter in high-elevation landscapes.

PubMed

Gese, Eric M; Dowd, Jennifer L B; Aubry, Lise M

2013-01-01

Competition between sympatric carnivores has long been of interest to ecologists. Increased understanding of these interactions can be useful for conservation planning. Increased snowmobile traffic on public lands and in habitats used by Canada lynx (Lynx canadensis) remains controversial due to the concern of coyote (Canis latrans) use of snowmobile trails and potential competition with lynx. Determining the variables influencing coyote use of snowmobile trails has been a priority for managers attempting to conserve lynx and their critical habitat. During 2 winters in northwest Wyoming, we backtracked coyotes for 265 km to determine how varying snow characteristics influenced coyote movements; 278 km of random backtracking was conducted simultaneously for comparison. Despite deep snow (>1 m deep), radio-collared coyotes persisted at high elevations (>2,500 m) year-round. All coyotes used snowmobile trails for some portion of their travel. Coyotes used snowmobile trails for 35% of their travel distance (random: 13%) for a mean distance of 149 m (random: 59 m). Coyote use of snowmobile trails increased as snow depth and penetrability off trails increased. Essentially, snow characteristics were most influential on how much time coyotes spent on snowmobile trails. In the early months of winter, snow depth was low, yet the snow column remained dry and the coyotes traveled off trails. As winter progressed and snow depth increased and snow penetrability increased, coyotes spent more travel distance on snowmobile trails. As spring approached, the snow depth remained high but penetrability decreased, hence coyotes traveled less on snowmobile trails because the snow column off trail was more supportive. Additionally, coyotes traveled closer to snowmobile trails than randomly expected and selected shallower snow when traveling off trails. Coyotes also preferred using snowmobile trails to access ungulate kills. Snow compaction from winter recreation influenced coyote

In situ analysis of carbon isotopes in North American diamonds

NASA Astrophysics Data System (ADS)

van Rythoven, A. D.; Hauri, E. H.; Wang, J.; McCandless, T.; Shirey, S. B.; Schulze, D. J.

2010-12-01

Diamonds from three North American kimberlite occurrences were investigated with cathodoluminescence (CL) and secondary ion mass spectrometry (SIMS) to determine their growth history and carbon isotope composition. Diamonds analyzed include fourteen from Lynx (Quebec), twelve from Kelsey Lake (Colorado) and eleven from A154 South (Diavik mine, Northwest Territories). Growth histories for the diamonds vary from simple to highly complex based on their CL images and depending on the individual stone. Deformation laminae are evident in CL images of the Lynx diamonds that typically are brownish in color. Two to five points per diamond were analyzed by SIMS for carbon isotope composition. Sample heterogeneity is minimal in terms of δ13C (vs. PDB) values. Points within single diamond had a maximum range of approximately 1 ‰. The results for the A154 South (-6.4 to -3 ‰) and Kelsey Lake (-11.2 to -2.6 ‰) stones were in accordance with earlier reported values. The Lynx kimberlite stones have anomalously high ratios and range from -3.5 to +0.2 ‰ (average: -1.4 ‰). No previous carbon isotope analyses on diamonds from Lynx or any other eastern Superior craton occurrence have been published. The diamonds possess carbon isotope ratios higher than those for the only other reported analyses of Superior craton diamonds at Wawa, Ontario (-5.5 to -1.1 ‰). In global terms, the only published analyses of diamonds that consistently contain even higher values are those from New South Wales (Australia). However, these diamonds are alluvial and contain eclogitic and/or exotic mineral inclusions. The Lynx diamonds are entirely peridotitic and from a primary deposit. The unusually low (i.e. >-5‰) δ13C values of the Lynx (and Wawa) diamonds may indicate a different carbon reservoir for the Superior craton mantle as compared to other cratons.

In situ Analysis of North American Diamond: Implications for Diamond Growth Modeling

NASA Astrophysics Data System (ADS)

Schulze, D. J.; Van Rythoven, A. D.; Hauri, E.; Wang, J.

2014-12-01

Diamond crystals from three North American kimberlite occurrences were investigated with cathodoluminescence (CL) and secondary ion mass spectrometry (SIMS) to determine their growth history, carbon isotope composition and nitrogen content. Samples analyzed include sixteen from Lynx (Quebec), twelve from Kelsey Lake (Colorado) and eighteen from A154 South (Diavik mine, Northwest Territories). Growth histories for the samples vary from simple to highly complex based on their CL images and depending on the individual stone. Deformation lamellae are evident in CL images of the Lynx crystals which typically are brownish in color. Two to five points per diamond were analyzed by SIMS for carbon isotope composition (δ13CPDB) and three to seven points for nitrogen content. The results for the A154 South (δ13CPDB = -6.76 to -1.68 ‰) and Kelsey Lake (δ13CPDB = -11.81 to -2.43 ‰) stones (mixed peridotitic and eclogitic suites) are similar to earlier reported values. The Lynx kimberlite stones have anomalously high carbon isotope ratios and range from -3.58 to +1.74 ‰. The Lynx diamond suite is almost entirely peridotitic. The unusually high (i.e. >-5‰) δ13C values of the Lynx diamonds, as well as those from Wawa, Ontario and Renard, Quebec, may indicate an anomalous carbon reservoir for the Superior cratonic mantle relative to other cratons. In addition to the heavier carbon isotope values, the Lynx samples have very low nitrogen contents (<100 ppm). Nitrogen contents for Kelsey Lake and Diavik samples are more typical and range to ~1100 ppm. Comparison of observed core to rim variations in nitrogen content and carbon isotopes with modeled Rayleigh fractionation trends for published diamond growth mechanisms allows for evaluation of carbon speciation and other parent fluid conditions. Observed trends that closely follow modeled data are rare, but appear to suggest diamond growth from carbonate-bearing fluids at Lynx and Diavik, and growth from a methane

Landscape location affects genetic variation of Canada lynx (Lynx canadensis)

Treesearch

M. K. Schwartz; L. S. Mills; Y. Ortega; L. F. Ruggiero; F. W. Allendorf

2003-01-01

The effect of a population's location on the landscape on genetic variation has been of interest to population genetics for more than half a century. However, most studies do not consider broadscale biogeography when interpreting genetic data. In this study, we propose an operational definition of a peripheral population, and then explore whether peripheral...

Recovery of large carnivores in Europe's modern human-dominated landscapes.

PubMed

Chapron, Guillaume; Kaczensky, Petra; Linnell, John D C; von Arx, Manuela; Huber, Djuro; Andrén, Henrik; López-Bao, José Vicente; Adamec, Michal; Álvares, Francisco; Anders, Ole; Balčiauskas, Linas; Balys, Vaidas; Bedő, Péter; Bego, Ferdinand; Blanco, Juan Carlos; Breitenmoser, Urs; Brøseth, Henrik; Bufka, Luděk; Bunikyte, Raimonda; Ciucci, Paolo; Dutsov, Alexander; Engleder, Thomas; Fuxjäger, Christian; Groff, Claudio; Holmala, Katja; Hoxha, Bledi; Iliopoulos, Yorgos; Ionescu, Ovidiu; Jeremić, Jasna; Jerina, Klemen; Kluth, Gesa; Knauer, Felix; Kojola, Ilpo; Kos, Ivan; Krofel, Miha; Kubala, Jakub; Kunovac, Saša; Kusak, Josip; Kutal, Miroslav; Liberg, Olof; Majić, Aleksandra; Männil, Peep; Manz, Ralph; Marboutin, Eric; Marucco, Francesca; Melovski, Dime; Mersini, Kujtim; Mertzanis, Yorgos; Mysłajek, Robert W; Nowak, Sabina; Odden, John; Ozolins, Janis; Palomero, Guillermo; Paunović, Milan; Persson, Jens; Potočnik, Hubert; Quenette, Pierre-Yves; Rauer, Georg; Reinhardt, Ilka; Rigg, Robin; Ryser, Andreas; Salvatori, Valeria; Skrbinšek, Tomaž; Stojanov, Aleksandar; Swenson, Jon E; Szemethy, László; Trajçe, Aleksandër; Tsingarska-Sedefcheva, Elena; Váňa, Martin; Veeroja, Rauno; Wabakken, Petter; Wölfl, Manfred; Wölfl, Sybille; Zimmermann, Fridolin; Zlatanova, Diana; Boitani, Luigi

2014-12-19

The conservation of large carnivores is a formidable challenge for biodiversity conservation. Using a data set on the past and current status of brown bears (Ursus arctos), Eurasian lynx (Lynx lynx), gray wolves (Canis lupus), and wolverines (Gulo gulo) in European countries, we show that roughly one-third of mainland Europe hosts at least one large carnivore species, with stable or increasing abundance in most cases in 21st-century records. The reasons for this overall conservation success include protective legislation, supportive public opinion, and a variety of practices making coexistence between large carnivores and people possible. The European situation reveals that large carnivores and people can share the same landscape. Copyright © 2014, American Association for the Advancement of Science.

Potential Effects of Winter Navigation on Movements of Large Land Mammals in Eastern Lake Superior and Saint Mary’s River Area. Great Lakes-Saint Lawrence Seaway Navigation Season Extension Program

DTIC Science & Technology

1980-09-01

considered effects on deer, seasonal migrations, daily movements and direct mortality; the dispersal of wolves , bobcats, lynx, moose, coyotes and red foxes...literature and information search pertaining to movements and dispersal of wolves , coyotes, foxes, bobcats, lynx, deer, and moose, and local records of the...islands in Whitefish Bay tracks of foxes, deer and wolf were identified. The partially obliterated tracks of a pack of five wolves were observed near

Suborbital Reusable Launch Vehicles as an Opportunity to Consolidate and Calibrate Ground Based and Satellite Instruments

NASA Astrophysics Data System (ADS)

Papadopoulos, K.

2014-12-01

XCOR Aerospace, a commercial space company, is planning to provide frequent, low cost access to near-Earth space on the Lynx suborbital Reusable Launch Vehicle (sRLV). Measurements in the external vacuum environment can be made and can launch from most runways on a limited lead time. Lynx can operate as a platform to perform suborbital in situ measurements and remote sensing to supplement models and simulations with new data points. These measurements can serve as a quantitative link to existing instruments and be used as a basis to calibrate detectors on spacecraft. Easier access to suborbital data can improve the longevity and cohesiveness of spacecraft and ground-based resources. A study of how these measurements can be made on Lynx sRLV will be presented. At the boundary between terrestrial and space weather, measurements from instruments on Lynx can help develop algorithms to optimize the consolidation of ground and satellite based data as well as assimilate global models with new data points. For example, current tides and the equatorial electrojet, essential to understanding the Thermosphere-Ionosphere system, can be measured in situ frequently and on short notice. Furthermore, a negative-ion spectrometer and a Faraday cup, can take measurements of the D-region ion composition. A differential GPS receiver can infer the spatial gradient of ionospheric electron density. Instruments and optics on spacecraft degrade over time, leading to calibration drift. Lynx can be a cost effective platform for deploying a reference instrument to calibrate satellites with a frequent and fast turnaround and a successful return of the instrument. A calibrated reference instrument on Lynx can make collocated observations as another instrument and corrections are made for the latter, thus ensuring data consistency and mission longevity. Aboard a sRLV, atmospheric conditions that distort remotely sensed data (ground and spacecraft based) can be measured in situ. Moreover, an

LYNX: A Linked Eulerian and Lagrangian Code. Volume II. LYNX Computer Listing

DTIC Science & Technology

1975-11-01

177« 178« 179» ISO* 18|» 182« 183» IBM * 185* 1B6« 187» 198« 189« 190« |f|i 192» 193« 194» 195» 196« 197» 198» 199* 200» 201...XPLC ID) ,Y(JD) ,TAUI ID) ,YB(IJD) .FBI IJD) ,T 1 3B ( ID ) • XCT I IJD) »VOBUjD» ,ZZ(NN0IM) ,VV(NND1M) »OBFUL •BETA tAP •OTCP iTP ...CELL CONTAINING PARTICLE NO I. •OB IOUFUL •BETA »AP •UTCP iTP •COMPEN ,SHEN •YP1 »YP2 •KMAX ,KBAR • 1JMA< ,IK»UX

Responses of beaver (Castor canadensis Kuhl) to predator chemicals.

PubMed

Engelhart, A; Müller-Schwarze, D

1995-09-01

Free-ranging beaver (Castor canadensis) in two different beaver populations in New York State were exposed to predator chemicals to test feeding inhibition. Solvent extracts of feces were applied to stem sections of aspen, the preferred food tree of beavers, permitting smelling and tasting the samples. Predator odors were from wolf (Canis lupus), coyote (Canis latrans), dog (Canis familiaris), black bear (Ursus americanus), river otter (Lutra canadensis), lynx (Lynx canadensis), and African lion (Panthera leo). The experiment was repeated. The predator odors reduced feeding compared to untreated or solvent-treated controls. One population consumed 17.0% of the samples with predator odor and 27.0% of the controls in summer, and 48.4% and 60.0%, respectively, in autumn. The other population accepted 3.15% of the predator odor samples and 11.05% of the controls in summer. Coyote, lynx, and river otter odors had the strongest effects. Diesel oil and bitter-tasting neem extract had weaker effects. Predator odors are promising as feeding repellents for beaver.

Can only poorer European countries afford large carnivores?

PubMed

Kojola, Ilpo; Hallikainen, Ville; Helle, Timo; Swenson, Jon E

2018-01-01

One of the classic approaches in environmental economics is the environmental Kuznets curve, which predicts that when a national economy grows from low to medium levels, threats to biodiversity conservation increase, but they decrease when the economy moves from medium to high. We evaluated this approach by examining how population densities of the brown bear (Ursus arctos), gray wolf (Canis lupus), and Eurasian lynx (Lynx lynx) were related to the national economy in 24 European countries. We used forest proportions, the existence of a compensation system, and country group (former socialist countries, Nordic countries, other countries) as covariates in a linear model with the first- and the second-order polynomial terms of per capita gross domestic product (GDP). Country group was treated as a random factor, but remained insignificant and was ignored. All models concerning brown bear and wolf provided evidence that population densities decreased with increasing GDP, but densities of lynx were virtually independent of GDP. Models for the wolf explained >80% of the variation in densities, without a difference between the models with all independent variables and the model with only GDP. For the bear, the model with GDP alone accounted for 10%, and all three variables 33%, of the variation in densities. Wolves exhibit a higher capacity for dispersal and reproduction than bear or lynx, but still exists at the lowest densities in wealthy European countries. We are aware that several other factors, not available for our models, influenced large carnivore densities. Based on the pronounced differences among large carnivore species in their countrywide relationships between densities and GDP, and a strikingly high relationship for the gray wolf, we suggest that our results reflected differences in political history and public acceptance of these species among countries. The compensation paid for the damages caused by the carnivores is not a key to higher carnivore

Disease-mediated bottom-up regulation: An emergent virus affects a keystone prey, and alters the dynamics of trophic webs

PubMed Central

Monterroso, Pedro; Garrote, Germán; Serronha, Ana; Santos, Emídio; Delibes-Mateos, Miguel; Abrantes, Joana; Perez de Ayala, Ramón; Silvestre, Fernando; Carvalho, João; Vasco, Inês; Lopes, Ana M.; Maio, Elisa; Magalhães, Maria J.; Mills, L. Scott; Esteves, Pedro J.; Simón, Miguel Ángel; Alves, Paulo C.

2016-01-01

Emergent diseases may alter the structure and functioning of ecosystems by creating new biotic interactions and modifying existing ones, producing cascading processes along trophic webs. Recently, a new variant of the rabbit haemorrhagic disease virus (RHDV2 or RHDVb) arguably caused widespread declines in a keystone prey in Mediterranean ecosystems - the European rabbit (Oryctolagus cuniculus). We quantitatively assess the impact of RHDV2 on natural rabbit populations and in two endangered apex predator populations: the Iberian lynx (Lynx pardinus) and the Spanish Imperial eagle (Aquila adalberti). We found 60–70% declines in rabbit populations, followed by decreases of 65.7% in Iberian lynx and 45.5% in Spanish Imperial eagle fecundities. A revision of the web of trophic interactions among rabbits and their dependent predators suggests that RHDV2 acts as a keystone species, and may steer Mediterranean ecosystems to management-dependent alternative states, dominated by simplified mesopredator communities. This model system stresses the importance of diseases as functional players in the dynamics of trophic webs. PMID:27796353

Mega starbirth cluster is biggest, brightest and hottest ever seen

NASA Astrophysics Data System (ADS)

2003-10-01

Artist’s impression of the Lynx Arc hi-res Size hi-res: 4519 kb Credits: European Space Agency, NASA and Robert A.E. Fosbury (European Space Agency/Space Telescope-European Coordinating Facility, Germany) Artist’s impression of the Lynx Arc This illustration shows an artist’s impression of the so-called Lynx arc, a newly identified distant super-cluster that contains a million blue-white stars twice as hot as similar stars in our Milky Way galaxy. The Lynx arc is one million times brighter than the well-known Orion Nebula, a nearby prototypical ‘starbirth’ region visible with small telescopes. The stars in the Lynx arc are more than twice as hot as the Orion Nebula’s central stars, with surface temperatures up to 80 000°C. Though there are much bigger and brighter star-forming regions than the Orion Nebula in our local Universe, none are as bright as the Lynx arc, nor do they contain such large numbers of hot stars. The stars are so hot that a very large fraction of their light is emitted in the ultraviolet that makes the gas glow with the green and red colours illustrated here. The so-called Lynx Arc is one million times brighter than the well-known Orion Nebula, a nearby prototypical 'starbirth' region visible with small telescopes. The newly identified super-cluster contains a million blue-white stars that are twice as hot as similar stars in our Milky Way galaxy. It is a rarely glimpsed example of the early days of the Universe where furious firestorms of starbirth blazed across the skies. The spectacular cluster's opulence is dimmed when seen from Earth only by the fact that it is 12 000 million light years away. The discovery of this unique and tantalising object was the result of a systematic study of distant clusters of galaxies carried out with major X-ray, optical and infrared telescopes, including the NASA/ESA Hubble Space Telescope, ROSAT and the Keck Telescopes. Bob Fosbury, of the European Space Agency's Space Telescope

Trans-Boundary Edge Effects in the Western Carpathians: The Influence of Hunting on Large Carnivore Occupancy.

PubMed

Kutal, Miroslav; Váňa, Martin; Suchomel, Josef; Chapron, Guillaume; López-Bao, José Vicente

2016-01-01

The conservation and management of wolves Canis lupus in the periphery of their distribution is challenging. Edges of wolf distribution are characterized by very few and intermittent occurrences of individuals, which are modulated by multiple factors affecting the overall population such as human-caused mortality, management targets and food availability. The knowledge of population dynamics in the edges becomes crucial when hunting takes place nearby the edges, which may preclude population expansion. Here, using as example the occurrence of wolves in the Beskydy Mountains (Czech-Slovak border), which are the edge distribution of the wolf and Eurasian lynx Lynx lynx populations in the West Carpathians, we explored how food availability and hunting in the Slovakian core area affected the dynamics of wolves in the edges of this population. During 2003-2012, we monitored large carnivore occurrence by snow-tracking surveys and tested potential differences in the occurrence of these species in Beskydy Mountains and potential mechanisms behind detected patterns. Despite the proximity to the core area, with several wolf reproductions being confirmed at least in recent years, the wolf was a very rare species in Beskydy and was recorded 14 times less often than the lynx. The expected abundance of wolves in the Beskydy Mountains was inversely related to prey availability in the Slovakian core area. Wolf hunting the year before influenced the expected abundance of wolves in Beskydy area. We discuss how different life histories and legal status of both species probably account for most of the observed difference of occurrence at range margins.

Trans-Boundary Edge Effects in the Western Carpathians: The Influence of Hunting on Large Carnivore Occupancy

PubMed Central

Váňa, Martin; Suchomel, Josef; Chapron, Guillaume; López-Bao, José Vicente

2016-01-01

The conservation and management of wolves Canis lupus in the periphery of their distribution is challenging. Edges of wolf distribution are characterized by very few and intermittent occurrences of individuals, which are modulated by multiple factors affecting the overall population such as human-caused mortality, management targets and food availability. The knowledge of population dynamics in the edges becomes crucial when hunting takes place nearby the edges, which may preclude population expansion. Here, using as example the occurrence of wolves in the Beskydy Mountains (Czech-Slovak border), which are the edge distribution of the wolf and Eurasian lynx Lynx lynx populations in the West Carpathians, we explored how food availability and hunting in the Slovakian core area affected the dynamics of wolves in the edges of this population. During 2003–2012, we monitored large carnivore occurrence by snow-tracking surveys and tested potential differences in the occurrence of these species in Beskydy Mountains and potential mechanisms behind detected patterns. Despite the proximity to the core area, with several wolf reproductions being confirmed at least in recent years, the wolf was a very rare species in Beskydy and was recorded 14 times less often than the lynx. The expected abundance of wolves in the Beskydy Mountains was inversely related to prey availability in the Slovakian core area. Wolf hunting the year before influenced the expected abundance of wolves in Beskydy area. We discuss how different life histories and legal status of both species probably account for most of the observed difference of occurrence at range margins. PMID:28002475

Interference in the tundra predator guild studied using local ecological knowledge.

PubMed

Ehrich, Dorothee; Strømeng, Marita A; Killengreen, Siw T

2016-04-01

The decline or recolonization of apex predators such as wolves and lynx, often driven by management decisions, and the expansion of smaller generalist predators such as red foxes, can have important ecosystem impacts. The mesopredator release hypothesis proposes that apex predators control medium-sized predator populations through competition and/or intraguild predation. The decline of apex predators thus leads to an increase in mesopredators, possibly with a negative impact on prey populations. Information about the abundance of mammalian tundra predators, wolf (Canis lupus), wolverine (Gulo gulo), lynx (Lynx lynx), red fox (Vulpes vulpes) and arctic fox (Vulpes lagopus) was collected from local active outdoors people during semi-structured interviews in 14 low arctic or sub-arctic settlements in western Eurasia. The perceived abundance of red fox decreased with higher wolf abundance and in more arctic areas, but the negative effect of wolves decreased in more arctic and therefore less productive ecosystems. The perceived abundance of arctic fox increased towards the arctic and in areas with colder winters. Although there was a negative correlation between the two fox species, red fox was not included in the model for perceived arctic fox abundance, which received most support. Our results support the mesopredator release hypothesis regarding the expansion of red foxes in subarctic areas and indicate that top-down control by apex predators is weaker in less productive and more arctic ecosystems. We showed that local ecological knowledge is a valuable source of information about large-scale processes, which are difficult to study through direct biological investigations.

Gastric spiral bacteria in small felids.

PubMed

Kinsel, M J; Kovarik, P; Murnane, R D

1998-06-01

Nine small cats, including one bobcat (Felis rufus), one Pallas cat (F. manul), one Canada lynx (F. lynx canadensis), two fishing cats (F. viverrina), two margays (F. wiedii), and two sand cats (F. margarita), necropsied between June 1995 and March 1997 had large numbers of gastric spiral bacteria, whereas five large cats, including one African lion (Panthera leo), two snow leopards (P. uncia), one Siberian tiger (P. tigris altaica), and one jaguar (P. onca), necropsied during the same period had none. All of the spiral organisms from the nine small cats were histologically and ultrastructurally similar. Histologically, the spiral bacteria were 5-14 microm long with five to nine coils per organism and were located both extracellularly within gastric glands and surface mucus, and intracellularly in parietal cells. Spiral bacteria in gastric mucosal scrapings from the Canada lynx, one fishing cat, and the two sand cats were gram negative and had corkscrewlike to tumbling motility when viewed with phase contrast microscopy. The bacteria were 0.5-0.7 microm wide, with a periodicity of 0.65-1.1 microm in all cats. Bipolar sheathed flagella were occasionally observed, and no periplasmic fibrils were seen. The bacteria were extracellular in parietal cell canaliculi and intracellular within parietal cells. Culture of mucosal scrapings from the Canada lynx and sand cats was unsuccessful. Based on morphology, motility, and cellular tropism, the bacteria were probably Helicobacter-like organisms. Although the two margays had moderate lymphoplasmacytic gastritis, the other cats lacked or had only mild gastric lymphoid infiltrates, suggesting that these organisms are either commensals or opportunistic pathogens.

Mechanisms of Inhibition and Potentiation of α4β2 Nicotinic Acetylcholine Receptors by Members of the Ly6 Protein Family*

PubMed Central

Wu, Meilin; Puddifoot, Clare A.; Taylor, Palmer; Joiner, William J.

2015-01-01

α4β2 nicotinic acetylcholine receptors (nAChRs) are abundantly expressed throughout the central nervous system and are thought to be the primary target of nicotine, the main addictive substance in cigarette smoking. Understanding the mechanisms by which these receptors are regulated may assist in developing compounds to selectively interfere with nicotine addiction. Here we report previously unrecognized modulatory properties of members of the Ly6 protein family on α4β2 nAChRs. Using a FRET-based Ca2+ flux assay, we found that the maximum response of α4β2 receptors to agonist was strongly inhibited by Ly6h and Lynx2 but potentiated by Ly6g6e. The mechanisms underlying these opposing effects appear to be fundamentally distinct. Receptor inhibition by Lynx2 was accompanied by suppression of α4β2 expression at the cell surface, even when assays were preceded by chronic exposure of cells to an established chaperone, nicotine. Receptor inhibition by Lynx2 also was resistant to pretreatment with extracellular phospholipase C, which cleaves lipid moieties like those that attach Ly6 proteins to the plasma membrane. In contrast, potentiation of α4β2 activity by Ly6g6e was readily reversible by pretreatment with phospholipase C. Potentiation was also accompanied by slowing of receptor desensitization and an increase in peak currents. Collectively our data support roles for Lynx2 and Ly6g6e in intracellular trafficking and allosteric potentiation of α4β2 nAChRs, respectively. PMID:26276394

An update on X-ray reflection gratings developed for future missions

NASA Astrophysics Data System (ADS)

Miles, Drew

2018-01-01

X-ray reflection gratings are a key technology being studied for future X-ray spectroscopy missions, including the Lynx X-ray mission under consideration for the 2020 Decadal Survey. We present an update on the status of X-ray reflection gratings being developed at Penn State University, including current fabrication techniques and mass-replication processes and the latest diffraction efficiency results and resolving power measurements. Individual off-plane X-ray reflection gratings have exceeded the current Lynx requirements for both effective area and resolving power. Finally, we discuss internal projects that will advance the technology readiness level of these gratings.

Mechanisms of inhibition and potentiation of α4β2 nicotinic acetylcholine receptors by members of the Ly6 protein family.

PubMed

Wu, Meilin; Puddifoot, Clare A; Taylor, Palmer; Joiner, William J

2015-10-02

α4β2 nicotinic acetylcholine receptors (nAChRs) are abundantly expressed throughout the central nervous system and are thought to be the primary target of nicotine, the main addictive substance in cigarette smoking. Understanding the mechanisms by which these receptors are regulated may assist in developing compounds to selectively interfere with nicotine addiction. Here we report previously unrecognized modulatory properties of members of the Ly6 protein family on α4β2 nAChRs. Using a FRET-based Ca(2+) flux assay, we found that the maximum response of α4β2 receptors to agonist was strongly inhibited by Ly6h and Lynx2 but potentiated by Ly6g6e. The mechanisms underlying these opposing effects appear to be fundamentally distinct. Receptor inhibition by Lynx2 was accompanied by suppression of α4β2 expression at the cell surface, even when assays were preceded by chronic exposure of cells to an established chaperone, nicotine. Receptor inhibition by Lynx2 also was resistant to pretreatment with extracellular phospholipase C, which cleaves lipid moieties like those that attach Ly6 proteins to the plasma membrane. In contrast, potentiation of α4β2 activity by Ly6g6e was readily reversible by pretreatment with phospholipase C. Potentiation was also accompanied by slowing of receptor desensitization and an increase in peak currents. Collectively our data support roles for Lynx2 and Ly6g6e in intracellular trafficking and allosteric potentiation of α4β2 nAChRs, respectively. © 2015 by The American Society for Biochemistry and Molecular Biology, Inc.

Improving the assessment of predator functional responses by considering alternate prey and predator interactions.

PubMed

Chan, K; Boutin, S; Hossie, T J; Krebs, C J; O'Donoghue, M; Murray, D L

2017-07-01

To improve understanding of the complex and variable patterns of predator foraging behavior in natural systems, it is critical to determine how density-dependent predation and predator hunting success are mediated by alternate prey or predator interference. Despite considerable theory and debate seeking to place predator-prey interactions in a more realistic context, few empirical studies have quantified the role of alternate prey or intraspecific interactions on predator-prey dynamics. We assessed functional responses of two similarly sized, sympatric carnivores, lynx (Lynx canadensis) and coyotes (Canis latrans), foraging on common primary (snowshoe hares; Lepus americanus) and alternate (red squirrels; Tamiasciurus hudsonicus) prey in a natural system. Lynx exhibited a hyperbolic prey-dependent response to changes in hare density, which is characteristic of predators relying primarily on a single prey species. In contrast, the lynx-squirrel response was found to be linear ratio dependent, or inversely dependent on hare density. The coyote-hare and coyote-squirrel interactions also were linear and influenced by predator density. We explain these novel results by apparent use of spatial and temporal refuges by prey, and the likelihood that predators commonly experience interference and lack of satiation when foraging. Our study provides empirical support from a natural predator-prey system that (1) predation rate may not be limited at high prey densities when prey are small or rarely captured; (2) interference competition may influence the predator functional response; and (3) predator interference has a variable role across different prey types. Ultimately, distinct functional responses of predators to different prey types illustrates the complexity associated with predator-prey interactions in natural systems and highlights the need to investigate predator behavior and predation rate in relation to the broader ecological community. © 2017 by the Ecological

Conservation challenges of managing lynx

Treesearch

John R. Squires

2005-01-01

Yellowstone National Park is hallowed ground when it comes to wildlife in America. The very word “Yellowstone” conjures up images of grizzly bears digging tubers, bands of elk dotting the landscape, and gray wolves pursuing elk along the Lamar River. However, Yellowstone also provides habitat to one of the rarest cats in the continental United States: the...

A Fall fur-hunt from Maine to New Brunswick, Canada: The 1858 journal of Manly Hardy

USGS Publications Warehouse

Krohn, W.B.

2005-01-01

Ecologists, conservationists, and others increasingly ask questions that require a reliable understanding of natural conditions in the past. For example, when the US Fish and Wildlife Service proposed to list the Canada lynx (Lynx canadensis) under the Federal Endangered Species Act, there was a need to know the historical status of this species in the northeastern US. The natural history writings of Manly Hardy, a successful, nineteenth-century businessman and respected amateur naturalist from Brewer, ME, proved useful in assessing the lynx's historical status. Because of the wide array of potential uses of Hardy's writings, the objective of this paper is to make biologists and other scholars aware of Hardy, especially his 15 surviving journals, 1852-1899. Hardy left the most extensive published record of any of the naturalists who wrote about wildlife in Maine from the late 1800s through the early 1900s. His articles and essays covered a wide range of subjects about a variety of bird and mammal species. A recently published biographical sketch of Hardy contains an annotated bibliography of his publications along with the republication of 14 of his mammalian works. In contrast, this article contains an example of his unpublished journal writing with significant wildlife observations.

75 FR 60735 - Proposed Issuance of Incidental Take Permits to the Washington Department of Fish and Wildlife...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-10-01

..., Ute ladies' tresses, Columbian white-tailed deer, gray wolf, grizzly bear, lynx, pygmy rabbit, and the... the Wildlife Areas including: horseback riding and dog field trial events; construction, maintenance...

Chromosomal rearrangements and karyotype evolution in carnivores revealed by chromosome painting

PubMed Central

Nie, W; Wang, J; Su, W; Wang, D; Tanomtong, A; Perelman, P L; Graphodatsky, A S; Yang, F

2012-01-01

Chromosomal evolution in carnivores has been revisited extensively using cross-species chromosome painting. Painting probes derived from flow-sorted chromosomes of the domestic dog, which has one of the most rearranged karyotypes in mammals and the highest dipoid number (2n=78) in carnivores, are a powerful tool in detecting both evolutionary intra- and inter-chromosomal rearrangements. However, only a few comparative maps have been established between dog and other non-Canidae species. Here, we extended cross-species painting with dog probes to seven more species representing six carnivore families: Eurasian lynx (Lynx lynx), the stone marten (Martes foina), the small Indian civet (Viverricula indica), the Asian palm civet (Paradoxurus hermaphrodites), Javan mongoose (Hepestes javanicas), the raccoon (Procyon lotor) and the giant panda (Ailuropoda melanoleuca). The numbers and positions of intra-chromosomal rearrangements were found to differ among these carnivore species. A comparative map between human and stone marten, and a map among the Yangtze finless porpoise (Neophocaena phocaenoides asiaeorientalis), stone marten and human were also established to facilitate outgroup comparison and to integrate comparative maps between stone marten and other carnivores with such maps between human and other species. These comparative maps give further insight into genome evolution and karyotype phylogenetic relationships among carnivores, and will facilitate the transfer of gene mapping data from human, domestic dog and cat to other species. PMID:22086079

New Platforms for Suborbital Astronomical Observations and In Situ Atmospheric Measurements: Spacecraft, Instruments, and Facilities

NASA Astrophysics Data System (ADS)

Rodway, K.; DeForest, C. E.; Diller, J.; Vilas, F.; Sollitt, L. S.; Reyes, M. F.; Filo, A. S.; Anderson, E.

2014-12-01

Suborbital astronomical observations have over 50 years' history using NASA's sounding rockets and experimental space planes. The new commercial space industry is developing suborbital reusable launch vehicles (sRLV's) to provide low-cost, flexible, and frequent access to space at ~100 km altitude. In the case of XCOR Aerospace's Lynx spacecraft, the vehicle design and capabilities work well for hosting specially designed experiments that can be flown with a human-tended researcher or alone with the pilot on a customized mission. Some of the first-generation instruments and facilities that will conduct solar observations on dedicated Lynx science missions include the SwRI Solar Instrument Pointing Platform (SSIPP) and Atsa Suborbital Observatory, as well as KickSat sprites, which are picosatellites for in situ atmospheric and solar phenomena measurements. The SSIPP is a demonstration two-stage pointed solar observatory that operates inside the Lynx cockpit. The coarse pointing stage includes the pilot in the feedback loop, and the fine stage stabilizes the solar image to achieve arcsecond class pointing. SSIPP is a stepping-stone to future external instruments that can operate with larger apertures and shorter wavelengths in the solar atmosphere. The Planetary Science Institute's Atsa Suborbital Observatory combines the strengths of ground-based observatories and space-based observing to create a facility where a telescope is maintained and used interchangeably with either in-house facility instruments or user-provided instruments. The Atsa prototype is a proof of concept, hand-guided camera that mounts on the interior of the Lynx cockpit to test target acquisition and tracking for human-operated suborbital astronomy. KickSat sprites are mass-producible, one inch printed circuit boards (PCBs) populated by programmable off the shelf microprocessors and radios for real time data transmission. The sprite PCBs can integrate chip-based radiometers, magnetometers

The role of predation and food limitation on claims for compensation, reindeer demography and population dynamics

PubMed Central

Tveraa, Torkild; Stien, Audun; Brøseth, Henrik; Yoccoz, Nigel G

2014-01-01

A major challenge in biodiversity conservation is to facilitate viable populations of large apex predators in ecosystems where they were recently driven to ecological extinction due to resource conflict with humans. Monetary compensation for losses of livestock due to predation is currently a key instrument to encourage human–carnivore coexistence. However, a lack of quantitative estimates of livestock losses due to predation leads to disagreement over the practice of compensation payments. This disagreement sustains the human–carnivore conflict. The level of depredation on year-round, free-ranging, semi-domestic reindeer by large carnivores in Fennoscandia has been widely debated over several decades. In Norway, the reindeer herders claim that lynx and wolverine cause losses of tens of thousands of animals annually and cause negative population growth in herds. Conversely, previous research has suggested that monetary predator compensation can result in positive population growth in the husbandry, with cascading negative effects of high grazer densities on the biodiversity in tundra ecosystems. We utilized a long-term, large-scale data set to estimate the relative importance of lynx and wolverine predation and density-dependent and climatic food limitation on claims for losses, recruitment and population growth rates in Norwegian reindeer husbandry. Claims of losses increased with increasing predator densities, but with no detectable effect on population growth rates. Density-dependent and climatic effects on claims of losses, recruitment and population growth rates were much stronger than the effects of variation in lynx and wolverine densities. Synthesis and applications. Our analysis provides a quantitative basis for predator compensation and estimation of the costs of reintroducing lynx and wolverine in areas with free-ranging semi-domestic reindeer. We outline a potential path for conflict management which involves adaptive monitoring programmes, open

The Atsa Suborbital Observatory: An Observatory for a Commercial Suborbital Spacecraft

NASA Astrophysics Data System (ADS)

Vilas, F.; Sollitt, L. S.

2012-12-01

instruments or user-provided instruments. Rapid turnaround will depend only on flight frequency. Data are stored on-board for retrieval when the spacecraft lands. We provide robust instrumentation that can survive suborbital spaceflight, assessment of the feasibility of the requested observations, rigorous scripting of the telescope operation, integration of the telescope plus instrument in a provider spacecraft, and periodic preventive maintenance for the telescope and instrument suite. XCOR Aerospace's Lynx III spacecraft is the best candidate vehicle to host a suborbital astronomical observatory. Unlike other similar vehicles, the Lynx will operate with only 1 or 2 people onboard (the pilot and an operator), allowing for each mission to be totally dedicated to the observation (no tourists will be bumping about; no other experiments will affect spacecraft pointing). A stable platform, the Lynx can point to an accuracy of ± 0.5o. Fine pointing is done by the telescope system. Best of all, the Lynx has a dorsal pod that opens directly to space. For astronomical observations, the best window is NO window. Currently, we plan to deploy a 20" diameter telescope in the Lynx III dorsal pod. XCOR Aerospace has the goal of eventually maintaining a Lynx flight frequency capability of 4 times/day. As with any observatory, Atsa will be available for observations by the community at large.

A strategy for screening and identifying mycotoxins in herbal medicine using ultra-performance liquid chromatography with tandem quadrupole time-of-flight mass spectrometry.

PubMed

Fang, Lian-xiang; Xiong, Ai-zhen; Wang, Rui; Ji, Shen; Yang, Li; Wang, Zheng-tao

2013-09-01

The objective of this study was to develop an effective strategy for screening and identifying mycotoxins in herbal medicine (HM). Here, Imperatae Rhizoma, a commonly used Chinese herb, was selected as a model HM. A crude drug contaminated with fungi was analyzed by comparing with uncontaminated ones. Ultra-performance LC coupled to tandem quadrupole TOF-MS (UPLC-Q-TOF-MS) with collision energy function was applied to analyze different samples from Imperatae Rhizoma. Then, MarkerLynx(TM) software was employed to screen the excess components in analytes, compared with control samples, and those selected markers were likely to be the metabolites of fungi. Furthermore, each of the accurate masses of the markers obtained from MarkerLynx(TM) was then searched in a mycotoxins/fungal metabolites database established in advance. The molecular formulas with relative mass error between the measured and theoretical mass within 5 ppm were chosen and then applied to MassFragment(TM) analysis for further confirmation of their structures. With the use of this approach, five mycotoxins that have never been reported in HM were identified in contaminated Imperatae Rhizoma. The results demonstrate the potential of UPLC-Q-TOF-MS coupled with the MarkerLynx(TM) software and MassFragment(TM) tool as an efficient and convenient method to screen and identify mycotoxins in herbal materials and aid in the quality control of HM. © 2013 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Sarcoptic mange in Swedish wildlife.

PubMed

Mörner, T

1992-12-01

Mange caused by Sarcoptes scabiei var. vulpes appeared among red foxes (Vulpes vulpes) in Scandinavia (south-west Finland) for the first time in this century in 1967. The disease was most probably introduced by foxes crossing the Gulf of Finland from Estonia. The mange epizootic spread northwards through Finland and reached Sweden in late 1975, when mangy foxes appeared in the northern part of the country. In 1984, mange was observed in most parts of Sweden. The disease was observed to spread rapidly in boreal areas, whereas it spread more slowly in agricultural areas. Mortality due to mange was very high. The duration of the disease before death due to emaciation has been shown experimentally to be over 90 days. An outbreak of fox mange among Arctic foxes (Alopex lagopus) occurred in 1986. The local population of Arctic foxes was caught and successfully treated. The following year, treated foxes were caught again and no signs of disease were found. Sporadic cases of fox mange have also been diagnosed in lynx (Lynx lynx), pine marten (Martes martes) and domestic dogs. Single cases have been observed in other species: wolf (Canis lupus), mountain hare (Lepus timidus), domestic cat and horse. No cases of sarcoptic mange have been recorded in the badger (Meles meles). At present, although fox mange occurs as an epizootic in local populations, the number of foxes has increased again in many parts of Sweden.

Using PGFM (13,14-dihydro-15-keto-prostaglandin F2α) as a non-invasive pregnancy marker for felids.

PubMed

Dehnhard, M; Finkenwirth, C; Crosier, A; Penfold, L; Ringleb, J; Jewgenow, K

2012-04-01

Understanding the complex endocrine interactions that control reproduction in felids is essential for captive breeding management. The most important demand is a quick and reliable pregnancy diagnosis. However, the occurrence of pseudopregnancies in felids complicates matters. We investigated whether the fecal prostaglandin metabolite (PGFM) recently suggested for pregnancy diagnosis in the lynx is suitable for all felid species. We found that increased levels of PGFM during the last trimester indicate pregnancy in seven of the eight main lineages of the carnivore family Felidae. PGFM levels in a sand cat (domestic cat lineage) were basal at mating and remained so until Day 40 post-mating. Day 41 marked the beginning of a distinct increase culminating in peak levels of 6.5 μg/g before parturition and decreasing again to baseline thereafter. Similar pregnancy profiles were obtained from the domestic cat, the leopard cat, the lynx, the ocelot and the caracal lineage, whereas in pseudopregnant individuals (sand cat, Iberian and Eurasian lynx) fecal PGFM remained at basal levels. In pregnant cheetahs (puma lineage) PGFM increased above basal following day ∼48 peaking before pregnancy but remained at baseline in pseudopregnant females. Discrepancies existed in the Panthera lineage. While Chinese leopard, Sumatran tiger, and the black panther showed marked increases of PGFM during the last weeks of pregnancy, only moderate increases in PGFM levels were found in the Indochinese tiger and the Persian leopard. Altogether, PGFM as tool for pregnancy diagnosis has been proven to be useful in breeding management of felids. Copyright © 2012 Elsevier Inc. All rights reserved.

Examining spatial patterns of selection and use for an altered predator guild

USGS Publications Warehouse

Organ, John F.; Mumma, Matthew; Holbrook, Joseph D.; Rayl, Nathaniel D.; Zieminski, Christopher J.; Fuller, Todd K.; Mahoney, Shane P.; Waits, Lisette P.

2017-01-01

Anthropogenic disturbances have altered species’ distributions potentially impacting interspecific interactions. Interference competition is when one species denies a competing species access to a resource. One mechanism of interference competition is aggression, which can result in altered space-use of a subordinate species due to the threat of harm, otherwise known as a ‘landscape of fear’. Alternatively, subordinates might outcompete dominant species in resource-poor environments via a superior ability to extract resources. Our goal was to evaluate spatial predictions of the ‘landscape of fear’ hypothesis for a carnivore guild in Newfoundland, Canada, where coyotes recently immigrated. Native Newfoundland carnivores include red foxes, Canada lynx, and black bears. We predicted foxes and lynx would avoid coyotes because of their larger size and similar dietary niches. We used scat-detecting dogs and genetic techniques to locate and identify predator scats. We then built resource selection functions and tested for avoidance by incorporating predicted values of selection for the alternative species into the best supported models of each species. We found multiple negative relationships, but notably did not find avoidance by foxes of areas selected by coyotes. While we did find that lynx avoided coyotes, we also found a reciprocal relationship. The observed patterns suggest spatial partitioning and not coyote avoidance, although avoidance could still be occurring at different spatial or temporal scales. Furthermore, Newfoundland’s harsh climate and poor soils may swing the pendulum of interspecific interactions from interference competition to exploitative competition, where subordinates outcompete dominant competitors through a superior ability to extract resources.

Examining spatial patterns of selection and use for an altered predator guild.

PubMed

Mumma, Matthew A; Holbrook, Joseph D; Rayl, Nathaniel D; Zieminski, Christopher J; Fuller, Todd K; Organ, John F; Mahoney, Shane P; Waits, Lisette P

2017-12-01

Anthropogenic disturbances have altered species' distributions potentially impacting interspecific interactions. Interference competition is when one species denies a competing species access to a resource. One mechanism of interference competition is aggression, which can result in altered space-use of a subordinate species due to the threat of harm, otherwise known as a 'landscape of fear'. Alternatively, subordinates might outcompete dominant species in resource-poor environments via a superior ability to extract resources. Our goal was to evaluate spatial predictions of the 'landscape of fear' hypothesis for a carnivore guild in Newfoundland, Canada, where coyotes recently immigrated. Native Newfoundland carnivores include red foxes, Canada lynx, and black bears. We predicted foxes and lynx would avoid coyotes because of their larger size and similar dietary niches. We used scat-detecting dogs and genetic techniques to locate and identify predator scats. We then built resource selection functions and tested for avoidance by incorporating predicted values of selection for the alternative species into the best supported models of each species. We found multiple negative relationships, but notably did not find avoidance by foxes of areas selected by coyotes. While we did find that lynx avoided coyotes, we also found a reciprocal relationship. The observed patterns suggest spatial partitioning and not coyote avoidance, although avoidance could still be occurring at different spatial or temporal scales. Furthermore, Newfoundland's harsh climate and poor soils may swing the pendulum of interspecific interactions from interference competition to exploitative competition, where subordinates outcompete dominant competitors through a superior ability to extract resources.

Status assessment of the Endangered snow leopard Panthera uncia and other large mammals in the Kyrgyz Alay, using community knowledge corrected for imperfect detection

USGS Publications Warehouse

Taubmann, Julia; Sharma, Koustubh; Uulu, Kubanychbek Zhumabai; Hines, James; Mishra, Charudutt

2015-01-01

The Endangered snow leopard Panthera uncia occurs in the Central Asian Mountains, which cover c. 2 million km2. Little is known about its status in the Kyrgyz Alay Mountains, a relatively narrow stretch of habitat connecting the southern and northern global ranges of the species. In 2010 we gathered information on current and past (1990, the last year of the Soviet Union) distributions of snow leopards and five sympatric large mammals across 14,000 km2 of the Kyrgyz Alay. We interviewed 95 key informants from local communities. Across 49 400-km2 grid cells we obtained 1,606 and 962 records of species occurrence (site use) in 1990 and 2010, respectively. The data were analysed using the multi-season site occupancy framework to incorporate uncertainty in detection across interviewees and time periods. High probability of use by snow leopards in the past was recorded in > 70% of the Kyrgyz Alay. Between the two sampling periods 39% of sites showed a high probability of local extinction of snow leopard. We also recorded high probability of local extinction of brown bear Ursus arctos (84% of sites) and Marco Polo sheep Ovis ammon polii (47% of sites), mainly in regions used intensively by people. Data indicated a high probability of local colonization by lynx Lynx lynx in 41% of the sites. Although wildlife has declined in areas of central and eastern Alay, regions in the north-west, and the northern and southern fringes appear to retain high conservation value.

Carnivore-caused livestock mortality in Trans-Himalaya.

PubMed

Namgail, Tsewang; Fox, Joseph L; Bhatnagar, Yash Veer

2007-04-01

The loss of livestock to wild predators is an important livelihood concern among Trans-Himalayan pastoralists. Because of the remoteness and inaccessibility of the region, few studies have been carried out to quantify livestock depredation by wild predators. In the present study, we assessed the intensity of livestock depredation by snow leopard Uncia uncia, Tibetan wolf Canis lupus chanku, and Eurasian lynx Lynx l. isabellina in three villages, namely Gya, Rumtse, and Sasoma, within the proposed Gya-Miru Wildlife Sanctuary in Ladakh, India. The three villages reported losses of 295 animals to these carnivores during a period of 2.5 years ending in early 2003, which represents an annual loss rate of 2.9% of their livestock holdings. The Tibetan wolf was the most important predator, accounting for 60% of the total livestock loss because of predation, followed by snow leopard (38%) and lynx (2%). Domestic goat was the major victim (32%), followed by sheep (30%), yak (15%), and horse (13%). Wolves killed horses significantly more and goats less than would be expected from their relative abundance. Snow leopards also killed horses significantly more than expected, whereas they killed other livestock types in proportion to their abundance. The three villages combined incurred an estimated annual monetary loss of approximately $USD 12,120 amounting to approximately $USD 190/household/y. This relatively high total annual loss occurred primarily because of depredation of the most valuable livestock types such as yak and horse. Conservation actions should initially attempt to target decrease of predation on these large and valuable livestock species.

Seroprevalences of antibodies to Neospora caninum and Toxoplasma gondii in zoo animals.

PubMed

Sedlák, K; Bártová, E

2006-03-31

Neospora caninum is an apicomplexan parasite that causes neuromuscular disease in dogs and abortions in cattle. Little is known about the prevalence of antibodies to this parasite in zoo animals. Sera from 556 animals, from 13 Czech and Slovak zoos were tested for antibodies to N. caninum and Toxoplasma gondii by indirect fluorescent antibody test. Antibodies to N. caninum were found in 31 of 556 zoo animals (5.6%), representing 18 of 114 species tested: Eurasian wolf (Canis lupus lupus), Maned wolf (Chrysocyon brachyurus), fennec (Vulpes zerda), cheetah (Acinonyx jubatus), jaguarundi (Herpailurus yaguarondi), Eurasian lynx (Lynx lynx), Indian lion (Panthera leo goojratensis), fisher (Martes pennanti), blackbuck (Antilope cervicapra), European bison (Bison bonasus), lechwe (Kobus leche), African buffalo (Syncerus caffer caffer), eland (Taurotragus oryx), sitatunga (Tragelaphus spekei gratus), Thorold's deer (Cervus albirostris), Eastern elk (C. elaphus canadensis), Vietnam sika deer (C. nippon pseudaxis) and Père David's deer (Elaphurus davidianus). Titres ranged from 1:40 to 1:2560. The highest prevalence 50% was found in family mustelidae of the order carnivora. Antibodies to T. gondii were detected in 193 of 556 zoo animals (34.7%) representing 72 of 114 species tested, with titres ranging from 1:40 to 1:40960. The highest prevalence 100% was found in families: hyaenidae, mustelidae, ursidae and viveridae of the order carnivora. The results of this study indicate that zoo animals have more exposure to T. gondii than to N. caninum. It is the first report of seroprevalence of antibodies to N. caninum in European zoo animals.

Emergence of canine distemper virus strains with modified molecular signature and enhanced neuronal tropism leading to high mortality in wild carnivores.

PubMed

Origgi, F C; Plattet, P; Sattler, U; Robert, N; Casaubon, J; Mavrot, F; Pewsner, M; Wu, N; Giovannini, S; Oevermann, A; Stoffel, M H; Gaschen, V; Segner, H; Ryser-Degiorgis, M-P

2012-11-01

An ongoing canine distemper epidemic was first detected in Switzerland in the spring of 2009. Compared to previous local canine distemper outbreaks, it was characterized by unusually high morbidity and mortality, rapid spread over the country, and susceptibility of several wild carnivore species. Here, the authors describe the associated pathologic changes and phylogenetic and biological features of a multiple highly virulent canine distemper virus (CDV) strain detected in and/or isolated from red foxes (Vulpes vulpes), Eurasian badgers (Meles meles), stone (Martes foina) and pine (Martes martes) martens, from a Eurasian lynx (Lynx lynx), and a domestic dog. The main lesions included interstitial to bronchointerstitial pneumonia and meningopolioencephalitis, whereas demyelination--the classic presentation of CDV infection--was observed in few cases only. In the brain lesions, viral inclusions were mainly in the nuclei of the neurons. Some significant differences in brain and lung lesions were observed between foxes and mustelids. Swiss CDV isolates shared together with a Hungarian CDV strain detected in 2004. In vitro analysis of the hemagglutinin protein from one of the Swiss CDV strains revealed functional and structural differences from that of the reference strain A75/17, with the Swiss strain showing increased surface expression and binding efficiency to the signaling lymphocyte activation molecule (SLAM). These features might be part of a novel molecular signature, which might have contributed to an increase in virus pathogenicity, partially explaining the high morbidity and mortality, the rapid spread, and the large host spectrum observed in this outbreak.

Large Scale Visual Recognition

DTIC Science & Technology

2012-06-01

mammal jelly fungus living thing man s animal orangutan mammal cougar mammal mammal German shepherd hyena red fox Flat Ours sailboat catamaran...snow leopard feline o er living thing conch en y wheelbarrow carnivore orangutan mammal meerkat mammal carnivore polar bear lynx lion Flat

Atypical fatal sarcocystosis associated with Sarcocystis neurona in a white-nosed coati (Nasua narica molaris)

USDA-ARS?s Scientific Manuscript database

The protozoan parasite Sarcocystis neurona is an important cause of disease in horses (equine protozoal myeloencephalitis, EPM) and in marine mammals. Isolated reports of clinical EPM-like disease have also been documented in a zebra, raccoon, domestic cat, domestic dog, ferret, skunk, mink, lynx, R...

Characterization of Botulinum Progenitor Toxins by Mass Spectrometry

DTIC Science & Technology

2005-08-01

and proteases by NTNH to HA-33 assistance in binding to and translocating progenitor toxin(s) through alimentary epithelial barriers (11, 12, 24...performed using peak list files generated by MassLynx (v3.5) and the following parameters: the National Center for Biotechnology Information

Prevalence of Toxoplasma gondii and Neosport caninum antibodies in Spanish ibex (Capra pryenaica hispanica)

USDA-ARS?s Scientific Manuscript database

Wild felids are considered important in maintaining the sylvatic cycle of Toxoplasma gondii. Although, T. gondii antibodies have been reported in several species of wild felids, little is known of the epidemiology and risk factors associated with T. gondii infection in wild cats. The Iberian lynx (L...

78 FR 17632 - Caribou-Targhee National Forest; Idaho and Wyoming; Amendment to the Targhee Revised Forest Plan...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-03-22

...; Amendment to the Targhee Revised Forest Plan--Canada Lynx Habitat AGENCY: Forest Service, USDA. ACTION... Forest proposes to amend the Targhee Revised Forest Plan (1997) to include a map identifying specific... Administrative Review Process: The decision on this proposed plan amendment will be subject to the objection...

Analysis of the seasonal activity rate of sympatric carnivores and their prey in Saguaro National Park

Treesearch

Mary Beth Benton; Siria A. Cerda-Navarro; Katie R. Keck; Brittany N. McKnight

2013-01-01

We investigated the monthly activity rates of bobcats (Lynx rufus), gray foxes (Urocyon cinereoargenteus) and four of their potential prey species, antelope jackrabbits (Lepus alleni), black-tailed jackrabbits (Lepus californicus), desert cottontails (Sylvilagus audubonii) and eastern cottontails (Sylvilagus floridanus), in Saguaro National Park using remote camera...

Bovine Tuberculosis (Mycobacterium bovis) in Wildlife in Spain

PubMed Central

Aranaz, Alicia; de Juan, Lucía; Montero, Natalia; Sánchez, Celia; Galka, Margarita; Delso, Consuelo; Álvarez, Julio; Romero, Beatriz; Bezos, Javier; Vela, Ana I.; Briones, Victor; Mateos, Ana; Domínguez, Lucas

2004-01-01

Mycobacterium bovis infection in wildlife and feral species is a potential source of infection for livestock and a threat to protected and endangered species. The aim of this study was to identify Spanish wild animal species infected with M. bovis through bacteriological culture and spacer oligonucleotide typing (spoligotyping) of isolates for epidemiological purposes. This study included samples from red deer (Cervus elaphus), fallow deer (Dama dama), wild boar (Sus scrofa), Iberian lynx (Lynx pardina), hare (Lepus europaeus), and cattle (Bos taurus). They were collected in several geographical areas that were selected for their unique ecological value and/or known relationships between wildlife and livestock. In the areas included in this survey, M. bovis strains with the same spoligotyping pattern were found infecting several wild species and livestock, which indicates an epidemiological link. A locally predominant spoligotype was found in these areas. Better understanding of the transmission and distribution of disease in these populations will permit more precise targeting of control measures. PMID:15184440

Book review: Handbook of the birds of the world, Volume 8, Broadbills to Tapaculos

USGS Publications Warehouse

Gustafson, Mary

2004-01-01

No abstract available.Review info: Handbook of the Birds of the World, Volume 8, Broadbills to Tapaculos. Edited by Josep del Hoyo, Andrew Elliott, and David Christie. Lynx Edicions, Barcelona, Spain. 2003: 845 pp., 81 color plates, over 470 color photographs, 672 maps. ISBN: 8487334504, $195.00 (cloth)

Survival of white-tailed deer neonates in Louisiana

Treesearch

Rebecca M. Shuman; Michael J. Cherry; Taylor N. Simoneaux; Elizabeth A. Dutoit; John C. Kilgo; Michael J. Chamberlain; Karl V. Miller

2017-01-01

Changing predator communities have potential to complicate management focused on ensuring sustainable white-tailed deer (Odocoileus virginianus) populations. Recent research reported that predation on neonates by coyotes (Canis latrans) and bobcats (Lynx rufus) can limit recruitment. However, no research has been conducted in areas of the southeastern United States...

The Effectiveness of Remotely Piloted Aircraft in a Permissive Hunter-Killer Scenario

DTIC Science & Technology

2014-01-01

APY -8, Lynx Block 20. 20 Specific Scenario In our scenario, prior intelligence has indicated that the target is likely to emerge from hiding...an additional 5 sec. must be taken to transfer (digitally) the target geolocation data to the strike platform. (Unlike in Case 1, it was not

Quantification of the humoral immune response and hemoplasma blood and tissue loads in cats coinfected with 'Candidatus Mycoplasma haemominutum' and feline leukemia virus.

PubMed

Wolf-Jäckel, Godelind A; Cattori, Valentino; Geret, Catrina P; Novacco, Marilisa; Meli, Marina L; Riond, Barbara; Boretti, Felicitas S; Lutz, Hans; Hofmann-Lehmann, Regina

2012-08-01

'Candidatus Mycoplasma haemominutum' (CMhm) is a hemotropic mycoplasma (aka hemoplasma) of domestic cats and wild felids. In a transmission study, we exposed eight specified pathogen-free cats to blood from Iberian lynxes (Lynx pardinus) infected with CMhm. The cats were coinfected with feline leukemia virus (FeLV) from an Iberian lynx or with a prototype FeLV. The goal of the present study was to quantify the humoral immune response to CMhm and to identify potential target tissues and sequestration sites. Antibodies were measured by a recombinant antigen-based enzyme-linked immunosorbent assay, and blood and tissue loads were quantified using real-time PCR. Seven out of eight cats became CMhm-infected; all of these cats seroconverted between 3 and 13 weeks after inoculation. Antibody levels correlated with the CMhm blood loads. The peak CMhm blood loads were inversely correlated with the incubation period. PCR-positive results were found in all 24 tissues tested but not for all samples. Although all tissues were PCR-positive in one cat euthanized ten weeks after infection, many tissues tested negative in six cats euthanized at week 20 after infection. In several cats, the spleen, lung, liver, heart and aorta contained more copies than expected given the tissue's blood supply, but most tissues contained fewer copies than expected. In conclusion, this is the first study to quantify the humoral immune response and tissue loads in CMhm-FeLV-coinfected cats. The tissue loads appeared to correlate with the duration of infection and with the blood loads, but no evidence of significant CMhm tissue sequestration was found. Copyright © 2012 Elsevier Ltd. All rights reserved.

SMBH Seeds: Model Discrimination with High-energy Emission Based on Scaling Relation Evolution

NASA Astrophysics Data System (ADS)

Ben-Ami, Sagi; Vikhlinin, Alexey; Loeb, Abraham

2018-02-01

We explore the expected X-ray (0.5–2 keV) signatures from supermassive black holes (SMBHs) at high redshifts (z∼ 5{--}12) assuming various models for their seeding mechanism and evolution. Seeding models are approximated through deviations from the {M}{BH}{--}σ relation observed in the local universe, while N-body simulations of the large-scale structure are used to estimate the density of observable SMBHs. We focus on two seeding model families: (i) light seed BHs from remnants of Pop-III stars and (ii) heavy seeds from the direct collapse of gas clouds. We investigate several models for the accretion history, such as sub-Eddington accretion, slim disk models, and torque-limited growth models. We consider observations with two instruments: (i) the Chandra X-ray Observatory and (ii) the proposed Lynx. We find that all of the simulated models are in agreement with the current results from the Chandra Deep Field South, i.e., consistent with zero SMBHs in the field of view. In deep Lynx exposures, the number of observed objects is expected to become statistically significant. We demonstrate the capability to limit the phase space of plausible scenarios of the birth and evolution of SMBHs by performing deep observations at a flux limit of 1× {10}-19 {erg} {{cm}}-2 {{{s}}}-1. Finally, we show that our models are in agreement with current limits on the cosmic X-ray background (CXRB) and the expected contribution from unresolved quasars. We find that an analysis of CXRB contributions down to the Lynx confusion limit yields valuable information that can help identify the correct scenario for the birth and evolution of SMBHs.

78 FR 32270 - Kenai National Wildlife Refuge, Soldotna, AK; Environmental Impact Statement for the Shadura...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-05-29

.... (CIRI), owns the subsurface estate of coal, oil, and gas in the project area. The project would be in... and brown bears, lynx, snowshoe hares, and numerous species of Neotropical birds, such as olive-sided... within the Refuge, portions of the subsurface estate, consisting of the oil, gas, and coal are owned by...

Wildlife scientists and wilderness managers finding common ground with noninvasive and nonintrusive sampling of wildlife

Treesearch

Michael K. Schwartz; Peter B. Landres; David J. Parsons

2011-01-01

Iconic wildlife species such as grizzly bears, wolves, lynx, and wolverines are often associated with wilderness. Wilderness may provide some of the last, and best, remaining places for such species because wilderness can offer long-term legislated protection, relatively large areas, and remoteness (Mattson 1997). Indeed, the word wilderness in its original form...

Seroprevalence of Toxoplasma gondii infection in captive mammals in three zoos in Mexico City, Mexico

USDA-ARS?s Scientific Manuscript database

Antibodies to Toxoplasma gondii were determined in 167 mammals in 3 zoos in Mexico City, Mexico using the modified agglutination test (MAT). Overall, antibodies to T. gondii were found in 89 (53.3%) of the 167 animals tested. Antibodies were found in 35 of 43 wild Felidae: 2 of 2 bobcats (Lynx rufus...

Thelazia callipaeda in wild carnivores from Romania: new host and geographical records.

PubMed

Mihalca, Andrei Daniel; Ionică, Angela Monica; D'Amico, Gianluca; Daskalaki, Aikaterini Alexandra; Deak, Georgiana; Matei, Ioana Adriana; Șimonca, Vasile; Iordache, Daniel; Modrý, David; Gherman, Călin Mircea

2016-06-18

Thelazia callipaeda is a vector-borne zoonotic nematode parasitizing the conjunctival sac of domestic and wild carnivores, rabbits and humans, with a vast distribution in Asia and the former Soviet Union. In Europe, the nematode has an emerging trend, being reported in Italy, France, Switzerland, Germany, Spain, Portugal, Bosnia and Herzegovina, Croatia, Romania, Greece and Serbia, with human cases known in Italy, France, Spain, Serbia and Croatia. In Romania, the infection was so far reported only in dogs, whereas there are no reports in wildlife despite the large numbers of wild carnivores in the country. The aim of this study was to evaluate the role of wild carnivores in the natural cycle of T. callipaeda in Romania. Between 2014 and 2016, 89 wild carnivores (64 golden jackals, Canis aureus, 13 grey wolves, Canis lupus, nine wildcats, Felis silvestris and three Eurasian lynxes, Lynx lynx) have been examined. During the necropsy, both eyes of all the examined animals have been thoroughly inspected for the presence of parasites. If present, all nematodes were collected in absolute ethanol (for molecular analysis of the partial cox1 gene) or in 4 % formalin (for morphological identification). In total, three animals were found to be infected with T. callipaeda: a grey wolf, a golden jackal and a wildcat. The BLAST analysis of all the sequences showed a 100 % similarity to T. callipaeda haplotype h1. To the best of our knowledge, this study represents the first report of T. callipaeda in golden jackals, and the first study on T. callipaeda in wildlife from Romania. Our data broaden the host spectrum and geographical distribution of T. callipaeda, highlighting the role of wild carnivores as natural reservoirs for the infection and confirming the ongoing expanding trend of this zoonotic nematode in Europe.

Effects of porcine zona pellucida immunocontraceptives in zoo felids.

PubMed

Harrenstien, Lisa A; Munson, Linda; Chassy, Lisa M; Liu, Irwin K M; Kirkpatrick, Jay F

2004-09-01

Methods of contraception are necessary for management of zoo felids; however, the most commonly used contraceptive (melengestrol acetate implant) is associated with serious adverse reactions with long-term use. Porcine zona pellucida (pZP) vaccines are promising as contraceptives, but their safety in zoo felids has not been tested. pZP vaccine was administered to 27 female felids representing 10 species, including African lion (Panthera leo), Asian leopard (P. pardus), jaguar (P. onca), tiger (P. tigris), snow leopard (P. uncia), cougar (Felis concolor), Siberian lynx (F. lynx), Canada lynx (F. canadensis), serval (F. serval), and bobcat (F. rufus), in 15 facilities. Over 6 wk, each animal received three i.m. injections of 65 microg pZP with Freund's complete adjuvant (FCA), Freund's incomplete adjuvant, or carbopol as the adjuvant. Behavioral signs of estrus were seen in 14 of the vaccinated felids. An unacceptably high incidence of adverse reactions was seen including injection site swelling, lameness, limb swelling, or abscessation (or all) in five felids after injection with FCA as the initial adjuvant. Adverse behavioral signs, including increased irritability and aggression, were seen in four felids. Six of the felids were assayed for antibodies against pZP during the 12 mo after vaccination; all showed antibody production. Antibody levels appeared to peak 1-4 mo after vaccination began, although elevated antibody levels persisted in two animals for > 12 mo after the first injection. All vaccinated felids were ovariohysterectomized 3-13 mo after vaccination. Folliculogenesis was present in all treated animals, and there was no histopathologic evidence of inflammatory damage to ovaries. Contraceptive efficacy was not specifically evaluated in this study; however, two of the three felids housed with an intact male became pregnant during the study, one of which gave birth to healthy cubs.

How a Picture Book Happens.

ERIC Educational Resources Information Center

Bonners, Susan

1994-01-01

The author and illustrator of a picture book about the life cycle of the lynx describes the research and development process she used to create the book. Contacts with wildlife biologists, presenting the predator/prey relationship, creating pictures and text, drawing from life, and creating the book jacket are among the topics covered. (KRN)

Chapter 7: Information needs and a research strategy for conserving forest carnivores

Treesearch

Leonard F. Ruggiero; Steven W. Buskirk; Keith B. Aubry; L. Jack Lyon; William J. Zielinski

1994-01-01

This forest carnivore conservation assessment summarizes what is known about the biology and ecology of the American marten, fisher, lynx, and wolverine. It is the first step in ascertaining what information we need to develop a scientifically sound strategy for species conservation. Although this assessment implies that we know what information we need to prescribe...

Chapter 6: The scientific basis for conserving forest carnivores: considerations for management

Treesearch

L. Jack Lyon; Keith B. Aubry; William J. Zielinski; Steven W. Buskirk; Leonard F. Ruggiero

1994-01-01

The reviews presented in previous chapters reveal substantial gaps in our knowledge about marten, fisher, lynx, and wolverine. These gaps severely constrain our ability to design reliable conservation strategies. This problem will be explored in depth in Chapter 7. In this chapter, our objective is to discuss management considerations resulting from what we currently...

Effects of climate change on wildlife in the Northern Rockies [Chapter 8

Treesearch

Kevin S. McKelvey; Polly C. Buotte

2018-01-01

Few data exist on the direct effects of climatic variability and change on animal species. Therefore, projected climate change effects must be inferred from what is known about habitat characteristics and the autecology of each species. Habitat for mammals, including predators (Canada lynx, fisher, wolverine) and prey (snowshoe hare) that depend on high-elevation,...

A rapid field test for sylvatic plague exposure in wild animals.

PubMed

Abbott, Rachel C; Hudak, Robert; Mondesire, Roy; Baeten, Laurie A; Russell, Robin E; Rocke, Tonie E

2014-04-01

Plague surveillance is routinely conducted to predict future epizootics in wildlife and exposure risk for humans. The most common surveillance method for sylvatic plague is detection of antibodies to Yersinia pestis F1 capsular antigen in sentinel animals, such as coyotes (Canis latrans). Current serologic tests for Y. pestis, hemagglutination (HA) test and enzyme-linked immunosorbent assay (ELISA), are expensive and labor intensive. To address this need, we developed a complete lateral flow device for the detection of specific antibodies to Y. pestis F1 and V antigens. Our test detected anti-F1 and anti-V antibodies in serum and Nobuto filter paper samples from coyotes, and in serum samples from prairie dogs (Cynomys ludovicianus), lynx (Lynx canadensis), and black-footed ferrets (Mustela nigripes). Comparison of cassette results for anti-F1 and anti-V antibodies with results of ELISA or HA tests showed correlations ranging from 0.68 to 0.98. This device provides an affordable, user-friendly tool that may be useful in plague surveillance programs and as a research tool.

A rapid field test for sylvatic plague exposure in wild animals

USGS Publications Warehouse

Abbott, Rachel C.; Hudak, Robert; Mondesire, Roy; Baeten, Laurie A.; Russell, Robin E.; Rocke, Tonie E.

2014-01-01

Plague surveillance is routinely conducted to predict future epizootics in wildlife and exposure risk for humans. The most common surveillance method for sylvatic plague is detection of antibodies to Yersinia pestis F1 capsular antigen in sentinel animals, such as coyotes (Canis latrans). Current serologic tests for Y. pestis, hemagglutination (HA) test and enzyme-linked immunosorbent assay (ELISA), are expensive and labor intensive. To address this need, we developed a complete lateral flow device for the detection of specific antibodies to Y. pestis F1 and V antigens. Our test detected anti-F1 and anti-V antibodies in serum and Nobuto filter paper samples from coyotes, and in serum samples from prairie dogs (Cynomys ludovicianus), lynx (Lynx canadensis), and black-footed ferrets (Mustela nigripes). Comparison of cassette results for anti-F1 and anti-V antibodies with results of ELISA or HA tests showed correlations ranging from 0.68 to 0.98. This device provides an affordable, user-friendly tool that may be useful in plague surveillance programs and as a research tool.

The military operator's experience of reliability and maintainability characteristics

NASA Astrophysics Data System (ADS)

Jones, R. Mcc.

An account is given of the British Army's approach to the achievement of high reliability and maintainability in rotorcraft during the procurement process. Attention is given to experience accumulated to date with the Gazelle, Scout, Agusta A109A, and Lynx helicopters; these offer lessons with respect to the Gem engine, fuel filtering, vibration, and an aircraft flight control system.

Abundance and food habits of cougars and bobcats in the Sierra San Luis, Sonora, Mexico

Treesearch

Hugo Luna Soria; Carlos A. Lopez Gonzalez

2005-01-01

Cougars (Puma concolor) and bobcats (Lynx rufus) are present throughout the Sky Islands of the Sonoran desert. We determined the abundance and food habits in northeastern Sonora, Mexico. Abundance indicated that cougars were common (4.19±5.57 cougars/100 km2 and 0.05±0.05 scats/km). According to the scat index, bobcats were more...

Installation and management of the SPS and LEP control system computers

NASA Astrophysics Data System (ADS)

Bland, Alastair

1994-12-01

Control of the CERN SPS and LEP accelerators and service equipment on the two CERN main sites is performed via workstations, file servers, Process Control Assemblies (PCAs) and Device Stub Controllers (DSCs). This paper describes the methods and tools that have been developed to manage the file servers, PCAs and DSCs since the LEP startup in 1989. There are five operational DECstation 5000s used as file servers and boot servers for the PCAs and DSCs. The PCAs consist of 90 SCO Xenix 386 PCs, 40 LynxOS 486 PCs and more than 40 older NORD 100s. The DSCs consist of 90 OS-968030 VME crates and 10 LynxOS 68030 VME crates. In addition there are over 100 development systems. The controls group is responsible for installing the computers, starting all the user processes and ensuring that the computers and the processes run correctly. The operators in the SPS/LEP control room and the Services control room have a Motif-based X window program which gives them, in real time, the state of all the computers and allows them to solve problems or reboot them.

A functional model for characterizing long-distance movement behaviour

USGS Publications Warehouse

Buderman, Frances E.; Hooten, Mevin B.; Ivan, Jacob S.; Shenk, Tanya M.

2016-01-01

Advancements in wildlife telemetry techniques have made it possible to collect large data sets of highly accurate animal locations at a fine temporal resolution. These data sets have prompted the development of a number of statistical methodologies for modelling animal movement.Telemetry data sets are often collected for purposes other than fine-scale movement analysis. These data sets may differ substantially from those that are collected with technologies suitable for fine-scale movement modelling and may consist of locations that are irregular in time, are temporally coarse or have large measurement error. These data sets are time-consuming and costly to collect but may still provide valuable information about movement behaviour.We developed a Bayesian movement model that accounts for error from multiple data sources as well as movement behaviour at different temporal scales. The Bayesian framework allows us to calculate derived quantities that describe temporally varying movement behaviour, such as residence time, speed and persistence in direction. The model is flexible, easy to implement and computationally efficient.We apply this model to data from Colorado Canada lynx (Lynx canadensis) and use derived quantities to identify changes in movement behaviour.

Implementation uncertainty when using recreational hunting to manage carnivores

PubMed Central

Bischof, Richard; Nilsen, Erlend B; Brøseth, Henrik; Männil, Peep; Ozoliņš, Jaānis; Linnell, John D C; Bode, Michael

2012-01-01

1. Wildlife managers often rely on resource users, such as recreational or commercial hunters, to achieve management goals. The use of hunters to control wildlife populations is especially common for predators and ungulates, but managers cannot assume that hunters will always fill annual quotas set by the authorities. It has been advocated that resource management models should account for uncertainty in how harvest rules are realized, requiring that this implementation uncertainty be estimated. 2. We used a survival analysis framework and long-term harvest data from large carnivore management systems in three countries (Estonia, Latvia and Norway) involving four species (brown bear, grey wolf, Eurasian lynx and wolverine) to estimate the performance of hunters with respect to harvest goals set by managers. 3. Variation in hunter quota-filling performance was substantial, ranging from 40% for wolverine in Norway to nearly 100% for lynx in Latvia. Seasonal and regional variation was also high within country–species pairs. We detected a positive relationship between the instantaneous potential to fill a quota slot and the relative availability of the target species for both wolverine and lynx in Norway. 4. Survivor curves and hazards – with survival time measured as the time from the start of a season until a quota slot is filled – can indicate the extent to which managers can influence harvest through adjustments of season duration and quota limits. 5. Synthesis and applications. We investigated seven systems where authorities use recreational hunting to manage large carnivore populations. The variation and magnitude of deviation from harvest goals was substantial, underlining the need to incorporate implementation uncertainty into resource management models and decisions-making. We illustrate how survival analysis can be used by managers to estimate the performance of resource users with respect to achieving harvest goals set by managers. The findings in this

PAnalyzer: a software tool for protein inference in shotgun proteomics.

PubMed

Prieto, Gorka; Aloria, Kerman; Osinalde, Nerea; Fullaondo, Asier; Arizmendi, Jesus M; Matthiesen, Rune

2012-11-05

Protein inference from peptide identifications in shotgun proteomics must deal with ambiguities that arise due to the presence of peptides shared between different proteins, which is common in higher eukaryotes. Recently data independent acquisition (DIA) approaches have emerged as an alternative to the traditional data dependent acquisition (DDA) in shotgun proteomics experiments. MSE is the term used to name one of the DIA approaches used in QTOF instruments. MSE data require specialized software to process acquired spectra and to perform peptide and protein identifications. However the software available at the moment does not group the identified proteins in a transparent way by taking into account peptide evidence categories. Furthermore the inspection, comparison and report of the obtained results require tedious manual intervention. Here we report a software tool to address these limitations for MSE data. In this paper we present PAnalyzer, a software tool focused on the protein inference process of shotgun proteomics. Our approach considers all the identified proteins and groups them when necessary indicating their confidence using different evidence categories. PAnalyzer can read protein identification files in the XML output format of the ProteinLynx Global Server (PLGS) software provided by Waters Corporation for their MSE data, and also in the mzIdentML format recently standardized by HUPO-PSI. Multiple files can also be read simultaneously and are considered as technical replicates. Results are saved to CSV, HTML and mzIdentML (in the case of a single mzIdentML input file) files. An MSE analysis of a real sample is presented to compare the results of PAnalyzer and ProteinLynx Global Server. We present a software tool to deal with the ambiguities that arise in the protein inference process. Key contributions are support for MSE data analysis by ProteinLynx Global Server and technical replicates integration. PAnalyzer is an easy to use multiplatform and

PAnalyzer: A software tool for protein inference in shotgun proteomics

PubMed Central

2012-01-01

Background Protein inference from peptide identifications in shotgun proteomics must deal with ambiguities that arise due to the presence of peptides shared between different proteins, which is common in higher eukaryotes. Recently data independent acquisition (DIA) approaches have emerged as an alternative to the traditional data dependent acquisition (DDA) in shotgun proteomics experiments. MSE is the term used to name one of the DIA approaches used in QTOF instruments. MSE data require specialized software to process acquired spectra and to perform peptide and protein identifications. However the software available at the moment does not group the identified proteins in a transparent way by taking into account peptide evidence categories. Furthermore the inspection, comparison and report of the obtained results require tedious manual intervention. Here we report a software tool to address these limitations for MSE data. Results In this paper we present PAnalyzer, a software tool focused on the protein inference process of shotgun proteomics. Our approach considers all the identified proteins and groups them when necessary indicating their confidence using different evidence categories. PAnalyzer can read protein identification files in the XML output format of the ProteinLynx Global Server (PLGS) software provided by Waters Corporation for their MSE data, and also in the mzIdentML format recently standardized by HUPO-PSI. Multiple files can also be read simultaneously and are considered as technical replicates. Results are saved to CSV, HTML and mzIdentML (in the case of a single mzIdentML input file) files. An MSE analysis of a real sample is presented to compare the results of PAnalyzer and ProteinLynx Global Server. Conclusions We present a software tool to deal with the ambiguities that arise in the protein inference process. Key contributions are support for MSE data analysis by ProteinLynx Global Server and technical replicates integration. PAnalyzer is an

Exploration of the Use of Unmanned Aerial Vehicles along with Other Assets to Enhance Border Protection

DTIC Science & Technology

2009-06-01

Border Initiative SUAV Small Unmanned Aerial Vehicle SAR Synthetic Aperture Radar TTPs Tactics, Techniques, And Procedures TRVS Trailer Remote...2008). 4 3. Overview of Illegal Activities According to the CBP, 178,770 pounds of cocaine, 2,178 pounds of heroin, 2,471,931 pounds of marijuana ...Raytheon Company Web Site) Another component of Predator B is the high- resolution Lynx Synthetic Aperture Radar (SAR). In their study, Tsunoda, et

Detection of Sarcocystis spp. infection in bobcats (Lynx rufus)

PubMed Central

Verma, S. K.; Calero-Bernal, R.; Lovallo, M. J.; Sweeny, A. R.; Grigg, M. E.; Dubey, J. P.

2015-01-01

The protozoan Sarcocystis neurona is an important cause of severe clinical disease of horses (called equine protozoal myeloencephalitis, EPM), marine mammals, companion animals, and several species of wildlife animals in the Americas. The Virginia opossum (Didelphis virginiana) is its definitive host in the USA and other animals act as intermediate or aberrant hosts. Samples of tongue and heart from 35 bobcats hunted for fur and food from Mississippi State, USA in February, 2014 were used for the present study. Muscles were examined for Sarcocystis infection by microscopic examination of either unfixed muscle squash preparations or pepsin digests, by histopathology of fixed samples, and by molecular methods. Sarcocystis-like bradyzoites were found in digests of 14 hearts and 10 tongues of 35 bobcats. In histological sections, sarcocysts were found in 26 of 35 bobcats; all appeared relatively thin-walled similar to S. felis sarcocysts under light microscope at 1000x magnification. S. neurona-like sarcocysts having thickened villar tips were seen in unstained muscle squash of tongue of two bobcats and PCR-DNA sequencing identified them definitively as S. neurona-like parasite. DNA extracted from bradyzoites obtained from tongue and heart muscle digests was analyzed by PCR-DNA sequencing at the ITS1 locus. Results indicated the presence of S. neurona-like parasite in 26 of 35 samples. ITS1 sequences identical to S. dayspi were identified in 3 bobcats, 2 of which were also co-infected with S. neurona-like parasite. The high prevalence of sarcocysts in bobcat tissues suggested an efficient sylvatic cycle of Sarcocystis spp. in the remote regions of Mississippi State with the bobcat as a relevant intermediate host. PMID:26138150

Proteomic profile of serum of pregnant women carring a fetus with Down syndrome using nano uplc Q-tof ms/ms technology.

PubMed

López Uriarte, Graciela Arelí; Burciaga Flores, Carlos Horacio; Torres de la Cruz, Víctor Manuel; Medina Aguado, María Magdalena; Gómez Puente, Viviana Maricela; Romero Gutiérrez, Liliana Nayeli; Martínez de Villarreal, Laura Elia

2018-06-01

Prenatal diagnosis of Down syndrome (DS) is based on the calculated risk of maternal age, biochemical and ultrasonographic markers and recently by cfDNA. Differences in proteomic profiles may give an opportunity to find new biomarkers. Characterize proteome of serum of mothers carrying DS fetus. Blood serum samples of three groups of women were obtained, (a) 10 non-pregnant, (b) 10 pregnant with healthy fetus by ultrasound evaluation, (c) nine pregnant with DS fetus. Sample preparation was as follows: Albumin/IgG depletion, desalting, and trypsin digestion; the process was performed in nanoUPLC MS/MS. Data analysis was made with Mass Lynx 4.1 and ProteinLynx Global Server 3.0, peptide and protein recognition by MASCOT algorithm and UNIPROT-Swissprot database. Each group showed different protein profiles. Some proteins were shared between groups. Only sera from pregnant women showed proteins related to immune and clot pathways. Mothers with DS fetus had 42 specific proteins. We found a different serum protein profile in mothers carrying DS fetuses that do not reflect expression of genes in the extra chromosome. Further studies will be necessary to establish the role of these proteins in aneuploid fetus and analyze their possible use as potential biomarkers.

Real-Time CORBA

DTIC Science & Technology

2000-10-01

control systems and prototyped the approach by porting the ILU ORB from Xerox to the Lynx real - time operating system . They then provided a distributed...compliant real - time operating system , a real-time ORB, and an ODMG-compliant real-time ODBMS [12]. The MITRE system is an infrastructure for...the server’s local operating system can handle. For instance, on a node controlled by the VXWorks real - time operating system with 256 local

Porting of EPICS to Real Time UNIX, and Usage Ported EPICS for FEL Automation

NASA Astrophysics Data System (ADS)

Salikova, Tatiana

This article describes concepts and mechanisms used in porting of EPICS (Experimental Physical and Industrial Control System) codes to platform of operating system UNIX. Without destruction of EPICS architecture, new features of EPICS provides the support for real time operating system LynxOS/x86 and equipment produced by INP (Budker Institute of Nuclear Physics). Application of ported EPICS reduces the cost of software and hardware is used for automation of FEL (Free Electron Laser) complex.

Three-dimensional geologic modeling to determine the spatial attributes of hydrocarbon contamination, Noval Facility Fuel Farm, El Centro, California

DOE Office of Scientific and Technical Information (OSTI.GOV)

Johnson, C.; Mutch, S.; Padgett, D.

An investigation was conducted at the Naval Air Facility located in El Centro (NAFEC), to determine the vertical and horizontal extent of hydrocarbon contamination at the facilities fuel farm. The fuel products are the result of tank and pipeline leakage, past tank cleaning, and past disposal of fuel dispensing and filter cleaning practices. Subsurface soil and groundwater data was collected via soil borings, monitoring wells, and CPT probes. Soil, groundwater, and analytical data were integrated using the LYNX geoscience modeling system (GMS). Interactive sessions with the data visualizer helped guide the modeling and identify data gaps. Modeling results indicate amore » continuous surface confining clay layer to a depth of about 12 to 15 ft. Groundwater is confined beneath this clay layer and monitoring wells indicate about 3 to 5 ft of artesian head. Hydrocarbon contamination is concentrated within this clay layer from about 5 to 12 ft below the ground surface. Residual fuel products located in the groundwater are attributed to slow leakage through the confirming clay layer. LYNX was also used to compute volumes of contaminated soil to aid in remediation cost analysis. Preliminary figures indicate about 60,000 yards[sup 3] of contaminated soil. Since the contamination is primarily confined to relatively impermeable clayey soils, site remediation will likely be ex-situ land farming.« less

Key role of European rabbits in the conservation of the Western Mediterranean basin hotspot.

PubMed

Delibes-Mateos, Miguel; Delibes, Miguel; Ferreras, Pablo; Villafuerte, Rafael

2008-10-01

The Mediterranean Basin is a global hotspot of biodiversity. Hotspots are said to be experiencing a major loss of habitat, but an added risk could be the decline of some species having a special role in ecological relationships of the system. We reviewed the role of European rabbits (Oryctolagus cuniculus) as a keystone species in the Iberian Peninsula portion of the Mediterranean hotspot. Rabbits conspicuously alter plant species composition and vegetation structure through grazing and seed dispersal, which creates open areas and preserves plant species diversity. Moreover, rabbit latrines have a demonstrable effect on soil fertility and plant growth and provide new feeding resources for many invertebrate species. Rabbit burrows provide nest sites and shelter for vertebrates and invertebrates. In addition, rabbits serve as prey for a number of predators, including the critically endangered Iberian lynx (Lynx pardinus) and Spanish Imperial Eagle (Aquila adalberti). Thus, the Mediterranean ecosystem of the Iberian Peninsula should be termed "the rabbit's ecosystem." To our knowledge, this is the first empirical support for existence of a multifunctional keystone species in a global hotspot of biodiversity. Rabbit populations have declined drastically on the Iberian Peninsula, with potential cascading effects and serious ecological and economic consequences. From this perspective, rabbit recovery is one of the biggest challenges for conservation of the Mediterranean Basin hotspot.

Aerodynamics and Aeroacoustics of Rotorcraft (l’ Aerodynamique et l’ aeroacoustique des aeronefs a voilure tournante).

DTIC Science & Technology

1995-08-01

R.T.N. Chen: A survey of nonuniform 22) R.Houwink, A.E.P.Veldman: steady and inflow models for rotorcraft flight unsteady separated flow computations for...grid with con- see [17]). Because of the cylindrical nature of the stant grid sizes. If an arbitrary nonuniform grid is flow of a hovering rotor an O-H...research distributed around the blade section (figure 4) within a lairing at DRA Bedford on the DRA’s Aeromechanics Lynx Control which extends from 80

Rotorcraft Design

DTIC Science & Technology

1978-01-01

MOMENT GROWTH BV %tV • REDUCE BLADr. BENDING MOMENTS B’< 17* HUB VIBRATORV FORCES • REDUCE VIBRATORV LOADSBV W FLIGHTWOR THINE SS • FAIL SAM...standardization in future military helicopter development. 2.4 SOME TECHNICAL ASPECTS OF MILITARY HELICOPTER DEVELOPMENT ^- Ss In recent years, the...8217 - fT • SS 1 H Fig.2 The Lynx HAS MK 2 Fig.3 The Gazelle — — " - Fig.4 Wessex MK 2 Fig. 5 The Puma MteMA

First Student Project at the University of Tennessee at Martin Observatory

NASA Astrophysics Data System (ADS)

Crews, Lionel J.; Turner, K.; Wesner, P.

2011-05-01

The University of Tennessee at Martin has recently completed the construction and setup of an observatory. The dome houses a 16" Meade telescope with SBIG STL-11000M CCD. For its first project, observations of the Delta Scuti type variable SZ Lynx were taken in March and analyzed using MiraPRO. A simple ephemeris calculation was done, and compared to previous results. This project was done under the University Scholars program, a four year scholarship program which includes a faculty-mentored research project.

Bobcats (Lynx rufus) are natural definitive host of Besnoitia darlingi

USDA-ARS?s Scientific Manuscript database

Bovine besnoitiosis, caused by Besnoitia besnoiti, is an economically important disease of cattle in many countries but its transmission remains a mystery. Wild felids are suspected to be its definitive hosts. The domestic cat (Felis catus) is known experimental definitive host for Besnoitia species...

Erosion / Corrosion Resistant Coatings for Compressor Airfoils

DTIC Science & Technology

2012-08-29

Platforms in Evaluation / Qualification T56 for C-130 AE1107 for V-22 T700 for H-60 T55 for MH-47 GE38 for H-53K Gem for Lynx T58 for H-46... T56 Performance Summary Uncoated vs Coated Engine Uncoated Engine (April – May 2011) With “sand turbine” at San Antonio: Coated Engine (July...power retention 2-3% Corrected Fuel Flow 1-2% Specific Fuel Consumption decrease @ 95% shp Coated Engine T56 Sand Ingestion Test 10 Pressure

Evaluating the operations capability of Freedom's Data Management System

NASA Technical Reports Server (NTRS)

Sowizral, Henry A.

1990-01-01

Three areas of Data Management System (DMS) performance are examined: raw processor speed, the subjective speed of the Lynx OS X-Window system, and the operational capacity of the Runtime Object Database (RODB). It is concluded that the proposed processor will operate at its specified rate of speed and that the X-Window system operates within users' subjective needs. It is also concluded that the RODB cannot provide the required level of service, even with a two-order of magnitude (100 fold) improvement in speed.

Design exploration and verification platform, based on high-level modeling and FPGA prototyping, for fast and flexible digital communication in physics experiments

NASA Astrophysics Data System (ADS)

Magazzù, G.; Borgese, G.; Costantino, N.; Fanucci, L.; Incandela, J.; Saponara, S.

2013-02-01

In many research fields as high energy physics (HEP), astrophysics, nuclear medicine or space engineering with harsh operating conditions, the use of fast and flexible digital communication protocols is becoming more and more important. The possibility to have a smart and tested top-down design flow for the design of a new protocol for control/readout of front-end electronics is very useful. To this aim, and to reduce development time, costs and risks, this paper describes an innovative design/verification flow applied as example case study to a new communication protocol called FF-LYNX. After the description of the main FF-LYNX features, the paper presents: the definition of a parametric SystemC-based Integrated Simulation Environment (ISE) for high-level protocol definition and validation; the set up of figure of merits to drive the design space exploration; the use of ISE for early analysis of the achievable performances when adopting the new communication protocol and its interfaces for a new (or upgraded) physics experiment; the design of VHDL IP cores for the TX and RX protocol interfaces; their implementation on a FPGA-based emulator for functional verification and finally the modification of the FPGA-based emulator for testing the ASIC chipset which implements the rad-tolerant protocol interfaces. For every step, significant results will be shown to underline the usefulness of this design and verification approach that can be applied to any new digital protocol development for smart detectors in physics experiments.

Extraordinary Genetic Diversity in a Wood Decay Mushroom.

PubMed

Baranova, Maria A; Logacheva, Maria D; Penin, Aleksey A; Seplyarskiy, Vladimir B; Safonova, Yana Y; Naumenko, Sergey A; Klepikova, Anna V; Gerasimov, Evgeny S; Bazykin, Georgii A; James, Timothy Y; Kondrashov, Alexey S

2015-10-01

Populations of different species vary in the amounts of genetic diversity they possess. Nucleotide diversity π, the fraction of nucleotides that are different between two randomly chosen genotypes, has been known to range in eukaryotes between 0.0001 in Lynx lynx and 0.16 in Caenorhabditis brenneri. Here, we report the results of a comparative analysis of 24 haploid genotypes (12 from the United States and 12 from European Russia) of a split-gill fungus Schizophyllum commune. The diversity at synonymous sites is 0.20 in the American population of S. commune and 0.13 in the Russian population. This exceptionally high level of nucleotide diversity also leads to extreme amino acid diversity of protein-coding genes. Using whole-genome resequencing of 2 parental and 17 offspring haploid genotypes, we estimate that the mutation rate in S. commune is high, at 2.0 × 10(-8) (95% CI: 1.1 × 10(-8) to 4.1 × 10(-8)) per nucleotide per generation. Therefore, the high diversity of S. commune is primarily determined by its elevated mutation rate, although high effective population size likely also plays a role. Small genome size, ease of cultivation and completion of the life cycle in the laboratory, free-living haploid life stages and exceptionally high variability of S. commune make it a promising model organism for population, quantitative, and evolutionary genetics. © The Author 2015. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

Structural equation modeling for observational studies

USGS Publications Warehouse

Grace, J.B.

2008-01-01

Structural equation modeling (SEM) represents a framework for developing and evaluating complex hypotheses about systems. This method of data analysis differs from conventional univariate and multivariate approaches familiar to most biologists in several ways. First, SEMs are multiequational and capable of representing a wide array of complex hypotheses about how system components interrelate. Second, models are typically developed based on theoretical knowledge and designed to represent competing hypotheses about the processes responsible for data structure. Third, SEM is conceptually based on the analysis of covariance relations. Most commonly, solutions are obtained using maximum-likelihood solution procedures, although a variety of solution procedures are used, including Bayesian estimation. Numerous extensions give SEM a very high degree of flexibility in dealing with nonnormal data, categorical responses, latent variables, hierarchical structure, multigroup comparisons, nonlinearities, and other complicating factors. Structural equation modeling allows researchers to address a variety of questions about systems, such as how different processes work in concert, how the influences of perturbations cascade through systems, and about the relative importance of different influences. I present 2 example applications of SEM, one involving interactions among lynx (Lynx pardinus), mongooses (Herpestes ichneumon), and rabbits (Oryctolagus cuniculus), and the second involving anuran species richness. Many wildlife ecologists may find SEM useful for understanding how populations function within their environments. Along with the capability of the methodology comes a need for care in the proper application of SEM.

[New evidence for the spread of Thelazia callipaeda in the Far East].

PubMed

Khrustalev, A V; Shaĭtanov, M V; Seredkin, I V

2015-01-01

Thelazia callipaeda nematodes parasitize in the eyes of domestic and wild carnivorous mammals (more often in Canidae). Numerous cases of human infestation are also known. The nematode spreads in South and East Asia although in the last decade this has been reported from dogs, cats and wolves in South and Central Europe as well. In the Russian Federation, T. callipaeda was earlier observed in dogs, cats, foxes and raccoon dogs in some regions of the Russian Far East. Two cases of human infestation were also reported. There has been no evidence of T. callipaeda in Russia in the past 50 years. Postmortem parasitological surveys of various wild carnivores were performed in the Primorsky Territory of Russia in the winter of 2012 to the summer of 2014. Conjunctival sac including the space under the nictitating membrane was sought for nematodes. T. callipaeda was detected in 28 sables of the 492 examined ones, in 5 out of the 11 raccoon dogs, in 2 out of the 3 foxes, and in one lynx. The examination of 25 kolinskies, 4 American minks, 3 Amur leopard cats, 2 yellow-throated martens and one badger provided negative results. The sable and the wild lynx are firstly reported as hosts of T. callipaeda. The findings suggest that there is a persisting natural reservoir of zoonotic thelaziosis in the Russian Far East. The epidemiological importance of this fact should not be underestimated.

A Framework for Quantitative Assessment of Impacts Related to Energy and Mineral Resource Development

DOE PAGES

Haines, Seth S.; Diffendorfer, Jay E.; Balistrieri, Laurie; ...

2013-05-15

Natural resource planning at all scales demands methods for assessing the impacts of resource development and use, and in particular it requires standardized methods that yield robust and unbiased results. Building from existing probabilistic methods for assessing the volumes of energy and mineral resources, we provide an algorithm for consistent, reproducible, quantitative assessment of resource development impacts. The approach combines probabilistic input data with Monte Carlo statistical methods to determine probabilistic outputs that convey the uncertainties inherent in the data. For example, one can utilize our algorithm to combine data from a natural gas resource assessment with maps of sagemore » grouse leks and pinon-juniper woodlands in the same area to estimate possible future habitat impacts due to possible future gas development. As another example: one could combine geochemical data and maps of lynx habitat with data from a mineral deposit assessment in the same area to determine possible future mining impacts on water resources and lynx habitat. The approach can be applied to a broad range of positive and negative resource development impacts, such as water quantity or quality, economic benefits, or air quality, limited only by the availability of necessary input data and quantified relationships among geologic resources, development alternatives, and impacts. In conclusion, the framework enables quantitative evaluation of the trade-offs inherent in resource management decision-making, including cumulative impacts, to address societal concerns and policy aspects of resource development.« less

A framework for quantitative assessment of impacts related to energy and mineral resource development

USGS Publications Warehouse

Haines, Seth S.; Diffendorfer, James; Balistrieri, Laurie S.; Berger, Byron R.; Cook, Troy A.; Gautier, Donald L.; Gallegos, Tanya J.; Gerritsen, Margot; Graffy, Elisabeth; Hawkins, Sarah; Johnson, Kathleen; Macknick, Jordan; McMahon, Peter; Modde, Tim; Pierce, Brenda; Schuenemeyer, John H.; Semmens, Darius; Simon, Benjamin; Taylor, Jason; Walton-Day, Katherine

2013-01-01

Natural resource planning at all scales demands methods for assessing the impacts of resource development and use, and in particular it requires standardized methods that yield robust and unbiased results. Building from existing probabilistic methods for assessing the volumes of energy and mineral resources, we provide an algorithm for consistent, reproducible, quantitative assessment of resource development impacts. The approach combines probabilistic input data with Monte Carlo statistical methods to determine probabilistic outputs that convey the uncertainties inherent in the data. For example, one can utilize our algorithm to combine data from a natural gas resource assessment with maps of sage grouse leks and piñon-juniper woodlands in the same area to estimate possible future habitat impacts due to possible future gas development. As another example: one could combine geochemical data and maps of lynx habitat with data from a mineral deposit assessment in the same area to determine possible future mining impacts on water resources and lynx habitat. The approach can be applied to a broad range of positive and negative resource development impacts, such as water quantity or quality, economic benefits, or air quality, limited only by the availability of necessary input data and quantified relationships among geologic resources, development alternatives, and impacts. The framework enables quantitative evaluation of the trade-offs inherent in resource management decision-making, including cumulative impacts, to address societal concerns and policy aspects of resource development.

Test plan for performance testing of the Eaton AC-3 electric vehicle

NASA Astrophysics Data System (ADS)

Crumley, R.; Heiselmann, H. W.

1985-04-01

An alternating current (ac) propulsion system for an electric vehicle was developed and tested. The test bed vehicle is a modified 1981 Mercury Lynx. The test plan was prepared specifically for the third modification to this test bed and identified as the Eaton AC-3. The scope of the testing done on the Eaton AC-3 includes coastdown and dynamometer tests but does not include environmental, on-road, or track testing. Coastdown testing is performed in accordance with SAE J-1263 (SAE Recommended Practice for Road Load Measurement and Dynamometer Simulation Using Coastdown Techniques).

The Carnegie Mellon University Insert Project

DTIC Science & Technology

1997-02-01

Real - Time Systems (INSERT) project under the DARPA Evolutionary Design for Complex Software (EDCS) Program. The INSERT team has completed an initial API definition and ported the existing real-time publication subscription group communication software to LynxOS 2.4, a POSIX.1b compliant OS. The distributed real-time publisher/subscriber communication model is now supported by a processor membership protocol which allows a node in the system to fail, or to rejoin the system later. When a node fails, all the publishers and subscribers on that node have to be

Air National Guard Remotely Piloted Aircraft and Domestic Missions: Opportunities and Challenges

DTIC Science & Technology

2015-01-01

a sense of urgency in requiring that the FAA produce a plan to accelerate the integration of commercial and government RPAs into the NAS and publish...J. Stence, and M. Woodring, “Lynx: A High-Resolution Synthetic Aperture Radar,” SPIE Aero- sense , Vol. 3704, 1999, pp. 2–4. 5 Tsunoda et al., 1999...accompany H.R. 658, FAA Modernization and Reform Act of 2012, 2012, pp. 195–197. 14 These sites were in addition to DoD’s Sense and Avoid test sites

VMEbus based computer and real-time UNIX as infrastructure of DAQ

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yasu, Y.; Fujii, H.; Nomachi, M.

1994-12-31

This paper describes what the authors have constructed as the infrastructure of data acquisition system (DAQ). The paper reports recent developments concerned with HP VME board computer with LynxOS (HP742rt/HP-RT) and Alpha/OSF1 with VMEbus adapter. The paper also reports current status of developing a Benchmark Suite for Data Acquisition (DAQBENCH) for measuring not only the performance of VME/CAMAC access but also that of the context switching, the inter-process communications and so on, for various computers including Workstation-based systems and VME board computers.

Bobcat attack on a cottontail rabbit

USGS Publications Warehouse

Biggins, D.E.; Biggins, D.M.

2006-01-01

We observed an attack by a bobcat (Lynx rufus) on a cottontail rabbit (Sylvilagus) that involved stealthy approach by the cat for >1 h, followed by a 12.3-s chase covering 116.0 m for the cat and 128.4 m for the rabbit. During the chase, the route of the cat from starting point to kill site was more direct than the semi-circular route of the rabbit. Stride lengths for the cat and total distance covered by the chase were longer than those previously reported for bobcats.

Enhanced understanding of predator-prey relationships using molecular methods to identify predator species, individual and sex.

PubMed

Mumma, Matthew A; Soulliere, Colleen E; Mahoney, Shane P; Waits, Lisette P

2014-01-01

Predator species identification is an important step in understanding predator-prey interactions, but predator identifications using kill site observations are often unreliable. We used molecular tools to analyse predator saliva, scat and hair from caribou calf kills in Newfoundland, Canada to identify the predator species, individual and sex. We sampled DNA from 32 carcasses using cotton swabs to collect predator saliva. We used fragment length analysis and sequencing of mitochondrial DNA to distinguish between coyote, black bear, Canada lynx and red fox and used nuclear DNA microsatellite analysis to identify individuals. We compared predator species detected using molecular tools to those assigned via field observations at each kill. We identified a predator species at 94% of carcasses using molecular methods, while observational methods assigned a predator species to 62.5% of kills. Molecular methods attributed 66.7% of kills to coyote and 33.3% to black bear, while observations assigned 40%, 45%, 10% and 5% to coyote, bear, lynx and fox, respectively. Individual identification was successful at 70% of kills where a predator species was identified. Only one individual was identified at each kill, but some individuals were found at multiple kills. Predator sex was predominantly male. We demonstrate the first large-scale evaluation of predator species, individual and sex identification using molecular techniques to extract DNA from swabs of wild prey carcasses. Our results indicate that kill site swabs (i) can be highly successful in identifying the predator species and individual responsible; and (ii) serve to inform and complement traditional methods. © 2013 John Wiley & Sons Ltd.

Citizen Science and Citizen Space Exploration: Potentials for Professional Collaboration

NASA Astrophysics Data System (ADS)

Wright, E.

2012-12-01

Citizens in Space is a project of the United States Rocket Academy, with the goal of promoting citizen science and citizen space exploration. This goal is enabled by the new reusable suborbital spacecraft now under development by multiple companies in the US. For the first phase of this project, we have acquired a contract for 10 flights on the Lynx suborbital spacecraft, which is under construction by XCOR Aerospace in Mojave, CA. This represents, to the best of our knowledge, the largest single bulk purchase of suborbital flights to date. Citizens in Space has published an open call for experiments to fly on these missions, which we expect will begin in late 2013 or early 2014. We will be selecting approx. 100 small experiments and 10 citizen astronauts to fly as payload operators. Although our primary goal is to encourage citizen science, these flight opportunities are also open to professional researchers who have payloads that meet our criteria. We believe that the best citizen-science projects are collaborations between professional and citizen scientists. We will discuss various ways in which professional scientists can collaborate with citizen scientists to take advantage of the flight opportunities provided by our program. We will discuss the capabilities of the Lynx vehicle, the 1u- and 2u-CubeSat form factor we are using for our payloads, and general considerations for payload integration. As an example of the payloads we can accommodate, we will discuss a NASA-inspired experiment to collect particles from the upper atmosphere.;

Evaluating noninvasive genetic sampling techniques to estimate large carnivore abundance.

PubMed

Mumma, Matthew A; Zieminski, Chris; Fuller, Todd K; Mahoney, Shane P; Waits, Lisette P

2015-09-01

Monitoring large carnivores is difficult because of intrinsically low densities and can be dangerous if physical capture is required. Noninvasive genetic sampling (NGS) is a safe and cost-effective alternative to physical capture. We evaluated the utility of two NGS methods (scat detection dogs and hair sampling) to obtain genetic samples for abundance estimation of coyotes, black bears and Canada lynx in three areas of Newfoundland, Canada. We calculated abundance estimates using program capwire, compared sampling costs, and the cost/sample for each method relative to species and study site, and performed simulations to determine the sampling intensity necessary to achieve abundance estimates with coefficients of variation (CV) of <10%. Scat sampling was effective for both coyotes and bears and hair snags effectively sampled bears in two of three study sites. Rub pads were ineffective in sampling coyotes and lynx. The precision of abundance estimates was dependent upon the number of captures/individual. Our simulations suggested that ~3.4 captures/individual will result in a < 10% CV for abundance estimates when populations are small (23-39), but fewer captures/individual may be sufficient for larger populations. We found scat sampling was more cost-effective for sampling multiple species, but suggest that hair sampling may be less expensive at study sites with limited road access for bears. Given the dependence of sampling scheme on species and study site, the optimal sampling scheme is likely to be study-specific warranting pilot studies in most circumstances. © 2015 John Wiley & Sons Ltd.

Sensors Locate Radio Interference

NASA Technical Reports Server (NTRS)

2009-01-01

After receiving a NASA Small Business Innovation Research (SBIR) contract from Kennedy Space Center, Soneticom Inc., based in West Melbourne, Florida, created algorithms for time difference of arrival and radio interferometry, which it used in its Lynx Location System (LLS) to locate electromagnetic interference that can disrupt radio communications. Soneticom is collaborating with the Federal Aviation Administration (FAA) to install and test the LLS at its field test center in New Jersey in preparation for deploying the LLS at commercial airports. The software collects data from each sensor in order to compute the location of the interfering emitter.

KSC-2012-4572

NASA Image and Video Library

2012-08-23

CAPE CANAVERAL, Fla. - At NASA's Kennedy Space Center in Florida, Lt. Gov. Jennifer Carroll R-Fla. addresses guests at a presentation during which XCOR Aerospace announced plans to open a manufacturing operation in Brevard. The company's suborbital Lynx Mark II spacecraft possibly will take off and land at Kennedy's shuttle landing facility. XCOR Aerospace is a small, privately held California corporation with focus on the research, development, project management and production of reusable launch vehicles, rocket engines and rocket propulsion systems. XCOR will focus on space tourism, experimental flights and launching satellites. Photo credit: NASA/ Frankie Martin

KSC-2012-4582

NASA Image and Video Library

2012-08-23

CAPE CANAVERAL, Fla. - At NASA's Kennedy Space Center in Florida, U.S. Sen. Bill Nelson D-Fla. addresses guests at a presentation during which XCOR Aerospace announced plans to open a manufacturing operation in Brevard. The company's suborbital Lynx Mark II spacecraft possibly will take off and land at Kennedy's shuttle landing facility. XCOR Aerospace is a small, privately held California corporation with focus on the research, development, project management and production of reusable launch vehicles, rocket engines and rocket propulsion systems. XCOR will focus on space tourism, experimental flights and launching satellites. Photo credit: NASA/ Frankie Martin

KSC-2012-4571

NASA Image and Video Library

2012-08-23

CAPE CANAVERAL, Fla. - At NASA's Kennedy Space Center in Florida, Space Florida President Frank DiBello addresses guests at a presentation during which XCOR Aerospace announced plans to open a manufacturing operation in Brevard County. The company's suborbital Lynx Mark II spacecraft possibly will take off and land at Kennedy's shuttle landing facility. XCOR Aerospace is a small, privately held California corporation with focus on the research, development, project management and production of reusable launch vehicles, rocket engines and rocket propulsion systems. XCOR will focus on space tourism, experimental flights and launching satellites. Photo credit: NASA/ Frankie Martin

A biological framework for evaluating whether a species is threatened or endangered in a significant portion of its range.

PubMed

Waples, Robin S; Adams, Peter B; Bohnsack, James; Taylor, Barbara L

2007-08-01

patterns of distribution and abundance do not depart substantially from what would be expected at any point in time under natural conditions in a large metapopulation. The Canadian lynx (Lynx canadensis) is ESA listed in the contiguous United States, where it occurs in four geographic areas. Populations in one region, the Northern Rockies/Cascades, have always been the most important for long-term persistence of the species in the United States. Because the other regions never contained more than limited amounts of good-quality lynx habitat, those areas are not considered to represent a significant portion of the species' range.

Sinks without borders: Snowshoe hare dynamics in a complex landscape

USGS Publications Warehouse

Griffin, Paul C.; Mills, L. Scott

2009-01-01

A full understanding of population dynamics of wide-ranging animals should account for the effects that movement and habitat use have on individual contributions to population growth or decline. Quantifying the per-capita, habitat-specific contribution to population growth can clarify the value of different patch types, and help to differentiate population sources from population sinks. Snowshoe hares, Lepus americanus, routinely use various habitat types in the landscapes they inhabit in the contiguous US, where managing forests for high snowshoe hare density is a priority for conservation of Canada lynx, Lynx canadensis. We estimated density and demographic rates via mark–recapture live trapping and radio-telemetry within four forest stand structure (FSS) types at three study areas within heterogeneous managed forests in western Montana. We found support for known fate survival models with time-varying individual covariates representing the proportion of locations in each of the FSS types, with survival rates decreasing as use of open young and open mature FSS types increased. The per-capita contribution to overall population growth increased with use of the dense mature or dense young FSS types and decreased with use of the open young or open mature FSS types, and relatively high levels of immigration appear to be necessary to sustain hares in the open FSS types. Our results support a conceptual model for snowshoe hares in the southern range in which sink habitats (open areas) prevent the buildup of high hare densities. More broadly, we use this system to develop a novel approach to quantify demographic sources and sinks for animals making routine movements through complex fragmented landscapes.

Bobcat (Lynx rufus) as a new natural intermediate host for Sarcocystis neurona

USDA-ARS?s Scientific Manuscript database

The protozoan Sarcocystis neurona is an important cause of severe clinical disease of horses (called equine protozoal myeloencephalitis, EPM), marine mammals, companion animals, and several species of wildlife animals in the Americas. The Virginia opossum (Didelphis virginiana) is its definitive hos...

Reconnaissance of the water resources of the Lonesome Valley area, Yavapai County, Arizona

USGS Publications Warehouse

Metzger, Donald G.

1957-01-01

In accordance with a request from its cooperating agency, the Arizona State Land Department, the U.S. Geological Survey has made a brief reconnaissance of the water resources of the Lonesome Valley area, Yavapai County, Ariz., to determine the probable hydrologic effects of a proposed dam on Lynx Creek. The construction of this dam has been proposed by the Arizona Game and Fish Department, for recreational and fish-cultural purposes. Data on the geology of the area were furnished by Mrs. Medora M. Krieger, geologist, Geologic Division, U.S. Geological Survey, and the map was prepared by Floyd R. Twenter, geologist, Ground Water Branch.

KSC-2012-4579

NASA Image and Video Library

2012-08-23

CAPE CANAVERAL, Fla. - At NASA's Kennedy Space Center in Florida, NASA Chief of Staff David Radzanowski addresses guests at a presentation during which XCOR Aerospace announced plans to open a manufacturing operation in Brevard County. Space Florida President Frank DiBello is seated to the right. The company's suborbital Lynx Mark II spacecraft possibly will take off and land at Kennedy's shuttle landing facility. XCOR Aerospace is a small, privately held California corporation with focus on the research, development, project management and production of reusable launch vehicles, rocket engines and rocket propulsion systems. XCOR will focus on space tourism, experimental flights and launching satellites. Photo credit: NASA/ Frankie Martin

KSC-2012-4578

NASA Image and Video Library

2012-08-23

CAPE CANAVERAL, Fla. - At NASA's Kennedy Space Center in Florida, Space Florida President Frank DiBello joined other space executives and elected officials in addressing guests at a presentation during which XCOR Aerospace announced plans to open a manufacturing operation in Brevard County. The company's suborbital Lynx Mark II spacecraft possibly will take off and land at Kennedy's shuttle landing facility. XCOR Aerospace is a small, privately held California corporation with focus on the research, development, project management and production of reusable launch vehicles, rocket engines and rocket propulsion systems. XCOR will focus on space tourism, experimental flights and launching satellites. Photo credit: NASA/ Frankie Martin

KSC-2012-4580

NASA Image and Video Library

2012-08-23

CAPE CANAVERAL, Fla. - At NASA's Kennedy Space Center in Florida, Bill Moore, chief operating officer of the Kennedy Space Center Visitor Complex, addresses guests at a presentation during which XCOR Aerospace announced plans to open a manufacturing operation in Brevard County. The company's suborbital Lynx Mark II spacecraft possibly will take off and land at Kennedy's shuttle landing facility. XCOR Aerospace is a small, privately held California corporation with focus on the research, development, project management and production of reusable launch vehicles, rocket engines and rocket propulsion systems. XCOR will focus on space tourism, experimental flights and launching satellites. Photo credit: NASA/ Frankie Martin

KSC-2012-4576

NASA Image and Video Library

2012-08-23

CAPE CANAVERAL, Fla. - At NASA's Kennedy Space Center in Florida, XCOR Chief Operating Officer Andrew Nelson addresses guests at a presentation during which XCOR Aerospace announced plans to open a manufacturing operation in Brevard. Space Florida President Frank DiBello is seated to the right. The company's suborbital Lynx Mark II spacecraft possibly will take off and land at Kennedy's shuttle landing facility. XCOR Aerospace is a small, privately held California corporation with focus on the research, development, project management and production of reusable launch vehicles, rocket engines and rocket propulsion systems. XCOR will focus on space tourism, experimental flights and launching satellites. Photo credit: NASA/ Frankie Martin

KSC-2012-4573

NASA Image and Video Library

2012-08-23

CAPE CANAVERAL, Fla. - At NASA's Kennedy Space Center in Florida, Center Director Bob Cabana addresses guests at a presentation during which XCOR Aerospace announced plans to open a manufacturing operation in Brevard. Space Florida President Frank DiBello is seated to the right. The company's suborbital Lynx Mark II spacecraft possibly will take off and land at Kennedy's shuttle landing facility. XCOR Aerospace is a small, privately held California corporation with focus on the research, development, project management and production of reusable launch vehicles, rocket engines and rocket propulsion systems. XCOR will focus on space tourism, experimental flights and launching satellites. Photo credit: NASA/ Frankie Martin

KSC-2012-4581

NASA Image and Video Library

2012-08-23

CAPE CANAVERAL, Fla. - At NASA's Kennedy Space Center in Florida, Todd Lindner, senior manager of Aviation Planning and Spaceport Development for the Jacksonville Aviation Authority, addresses guests at a presentation during which XCOR Aerospace announced plans to open a manufacturing operation in Brevard. The company's suborbital Lynx Mark II spacecraft possibly will take off and land at Kennedy's shuttle landing facility. XCOR Aerospace is a small, privately held California corporation with focus on the research, development, project management and production of reusable launch vehicles, rocket engines and rocket propulsion systems. XCOR will focus on space tourism, experimental flights and launching satellites. Photo credit: NASA/ Frankie Martin

KSC-2012-4575

NASA Image and Video Library

2012-08-23

CAPE CANAVERAL, Fla. - At NASA's Kennedy Space Center in Florida, XCOR President Jeff Greason addresses guests at a presentation during which XCOR Aerospace announced plans to open a manufacturing operation in Brevard. Space Florida President Frank DiBello is seated to the right. The company's suborbital Lynx Mark II spacecraft possibly will take off and land at Kennedy's shuttle landing facility. XCOR Aerospace is a small, privately held California corporation with focus on the research, development, project management and production of reusable launch vehicles, rocket engines and rocket propulsion systems. XCOR will focus on space tourism, experimental flights and launching satellites. Photo credit: NASA/ Frankie Martin

Use of ultra-high-pressure liquid chromatography-quadrupole time-of-flight MS to discover the presence of pesticide metabolites in food samples.

PubMed

Hernández, Félix; Grimalt, Susana; Pozo, Oscar J; Sancho, Juan V

2009-07-01

In this paper we illustrate the use of two different methodologies to investigate the presence of pesticide metabolites in parent pesticide-positive food samples, using ultra-high-pressure liquid chromatography coupled to hybrid quadrupole time-of-flight (UHPLC-QTOF) mass spectrometry. First, a common fragmentation pathway between the parent pesticide and its metabolites has been considered to search for metabolites in two positive market samples (imazalil in lemon, chlorpyrifos in grape). Secondly, olive oil samples from field residue trials were used for automated application of comparative software (MetaboLynx), which was used with treated and untreated samples to search for expected and unexpected metabolites of phosmet. One of the main objectives when using these approaches was to avoid the tedious manual searching for potential metabolites within the huge amount of information contained in the total ion chromatogram acquired by TOF MS. The common fragmentation approach applied to TOF MS full-acquisition data, considering an enhanced fragmentation in the collision cell, has allowed the discovery of two metabolites of imazalil (1-[2-(2,4-dichlorophenyl)-2-hydroxyethyl]-1H-imidazole and 1-[2-(2,4-dichlorophenyl)-2-oxoethyl]-1H-imidazole) in a lemon positive sample, as well as another two metabolites of chlorpyrifos (chlorpyrifos-oxon and 3,5,6-trichloro-2-pyridinol) in a grape positive sample. Moreover, MetaboLynx application to TOF MS data, without promoting fragmentation, from treated and untreated olive oil samples has been helpful in detecting the metabolite phosmet-oxon. In both strategies, every metabolite detected by TOF MS was confirmed using QTOF and/or triple quadrupole instruments. Accurate masses given by TOF MS together with the valuable information on product ions given by QTOF MS/MS experiments were crucial for the unambiguous identification of metabolites.

Modelling Landscape-Level Numerical Responses of Predators to Prey: The Case of Cats and Rabbits

PubMed Central

Cruz, Jennyffer; Glen, Alistair S.; Pech, Roger P.

2013-01-01

Predator-prey systems can extend over large geographical areas but empirical modelling of predator-prey dynamics has been largely limited to localised scales. This is due partly to difficulties in estimating predator and prey abundances over large areas. Collection of data at suitably large scales has been a major problem in previous studies of European rabbits (Oryctolagus cuniculus) and their predators. This applies in Western Europe, where conserving rabbits and predators such as Iberian lynx (Lynx pardinus) is important, and in other parts of the world where rabbits are an invasive species supporting populations of introduced, and sometimes native, predators. In pastoral regions of New Zealand, rabbits are the primary prey of feral cats (Felis catus) that threaten native fauna. We estimate the seasonal numerical response of cats to fluctuations in rabbit numbers in grassland–shrubland habitat across the Otago and Mackenzie regions of the South Island of New Zealand. We use spotlight counts over 1645 km of transects to estimate rabbit and cat abundances with a novel modelling approach that accounts simultaneously for environmental stochasticity, density dependence and varying detection probability. Our model suggests that cat abundance is related consistently to rabbit abundance in spring and summer, possibly through increased rabbit numbers improving the fecundity and juvenile survival of cats. Maintaining rabbits at low abundance should therefore suppress cat numbers, relieving predation pressure on native prey. Our approach provided estimates of the abundance of cats and rabbits over a large geographical area. This was made possible by repeated sampling within each season, which allows estimation of detection probabilities. A similar approach could be applied to predator-prey systems elsewhere, and could be adapted to any method of direct observation in which there is no double-counting of individuals. Reliable estimates of numerical responses are essential

Snapshot of viral infections in wild carnivores reveals ubiquity of parvovirus and susceptibility of Egyptian mongoose to feline panleukopenia virus.

PubMed

Duarte, Margarida D; Henriques, Ana Margarida; Barros, Sílvia Carla; Fagulha, Teresa; Mendonça, Paula; Carvalho, Paulo; Monteiro, Madalena; Fevereiro, Miguel; Basto, Mafalda P; Rosalino, Luís Miguel; Barros, Tânia; Bandeira, Victor; Fonseca, Carlos; Cunha, Mónica V

2013-01-01

endangered Iberian lynx (Lynx pardinus).

Mammal responses to the human footprint vary across species and stressors.

PubMed

Toews, Mary; Juanes, Francis; Burton, A Cole

2018-07-01

A rapidly expanding human footprint - comprised of anthropogenic land-use change and infrastructure - is profoundly affecting wildlife distributions worldwide. Cumulative effects management (CEM) is a regional approach that seeks to manage combined effects of the human footprint on biodiversity across large spatial scales. Challenges to implementing this approach include a lack of ecological data at large spatial scales, the high cost of monitoring multiple indicators, and the need to manage multiple footprints across industries. To inform development of effective CEM, we used large mammals as indicators to address the following questions: a) do species respond more strongly to individual footprint features or to cumulative effects (combined area of all footprint types, measured as total footprint), b) which features elicit the strongest responses across species, and c) are the direction of responses to footprint consistent? We used data from 12 years of snowtrack surveys (2001-2013) in the boreal forest of Alberta, coupled with regional footprint and landcover data, to develop generalized linear mixed-effects models relating the relative abundance of five boreal mammals [gray wolf (Canis lupus), Canada lynx (Lynx canadensis), coyote (Canis latrans), white-tailed deer (Odocoileus virginianus) and moose (Alces alces)] to individual and cumulative effects of the human footprint. We found that across species the strongest responses were to agriculture, roads, and young cutblocks (<10 years), suggesting these as potential priority stressors to address within CEM. Most species also responded to total footprint, indicating that in the absence of detailed information on individual features, this coarse measure can serve as an index of cumulative effects. There was high variability in direction and magnitude of responses across species, indicating that community-level responses are likely and should be considered within CEM planning. Copyright © 2018 Elsevier Ltd. All

Artificial intelligence: Neural network model as the multidisciplinary team member in clinical decision support to avoid medical mistakes.

PubMed

Buzaev, Igor Vyacheslavovich; Plechev, Vladimir Vyacheslavovich; Nikolaeva, Irina Evgenievna; Galimova, Rezida Maratovna

2016-09-01

The continuous uninterrupted feedback system is the essential part of any well-organized system. We propose aLYNX concept that is a possibility to use an artificial intelligence algorithm or a neural network model in decision-making system so as to avoid possible mistakes and to remind the doctors to review tactics once more in selected cases. aLYNX system includes: registry with significant factors, decisions and results; machine learning process based on this registry data; the use of the machine learning results as the adviser. We show a possibility to build a computer adviser with a neural network model for making a choice between coronary aortic bypass surgery (CABG) and percutaneous coronary intervention (PCI) in order to achieve a higher 5-year survival rate in patients with angina based on the experience of 5107 patients. The neural network was trained by 4679 patients who achieved 5-year survival. Among them, 2390 patients underwent PCI and 2289 CABG. After training, the correlation coefficient ( r ) of the network was 0.74 for training, 0.67 for validation, 0.71 for test and 0.73 for total. Simulation of the neural network function has been performed after training in the two groups of patients with known 5-year outcome. The disagreement rate was significantly higher in the dead patient group than that in the survivor group between neural network model and heart team [16.8% (787/4679) vs. 20.3% (87/428), P  = 0.065)]. The study shows the possibility to build a computer adviser with a neural network model for making a choice between CABG and PCI in order to achieve a higher 5-year survival rate in patients with angina.

SLEEPLESS is a bi-functional regulator of excitability and cholinergic synaptic transmission

PubMed Central

Wu, Meilin; Robinson, James E.; Joiner, William J.

2014-01-01

Summary Background Although sleep is conserved throughout evolution, the molecular basis of its control is still largely a mystery. We previously showed that the quiver/sleepless (qvr/sss) gene encodes a membrane-tethered protein that is required for normal sleep in Drosophila. SLEEPLESS (SSS) protein functions, at least in part, by upregulating the levels and open probability of Shaker (Sh) potassium channels to suppress neuronal excitability and enable sleep. Consistent with this proposed mechanism, loss-of-function mutations in Sh phenocopy qvr/sss null mutants. However, sleep is more genetically modifiable in Sh than in qvr/sss mutants, suggesting that sss may regulate additional molecules to influence sleep. Results Here we show that SSS also antagonizes nicotinic acetylcholine receptors (nAChRs) to reduce synaptic transmission and promote sleep. Mimicking this antagonism with the nAChR inhibitor mecamylamine or by RNAi knockdown of specific nAChR subunits is sufficient to restore sleep to qvr/sss mutants. Regulation of nAChR activity by SSS occurs post-transcriptionally since the levels of nAChR mRNAs are unchanged in qvr/sss mutants. Regulation of nAChR activity by SSS may in fact be direct, since SSS forms a stable complex with and antagonizes fly nAChR function in transfected cells. Intriguingly, lynx1, a mammalian homolog of SSS, can partially restore normal sleep to qvr/sss mutants, and lynx1 can form stable complexes with Shaker-type channels and nAChRs. Conclusions Together, our data point to an evolutionarily conserved, bi-functional role for SSS and its homologs in controlling excitability and synaptic transmission in fundamental processes of the nervous system such as sleep. PMID:24613312

New World feline APOBEC3 potently controls inter-genus lentiviral transmission.

PubMed

Konno, Yoriyuki; Nagaoka, Shumpei; Kimura, Izumi; Yamamoto, Keisuke; Kagawa, Yumiko; Kumata, Ryuichi; Aso, Hirofumi; Ueda, Mahoko Takahashi; Nakagawa, So; Kobayashi, Tomoko; Koyanagi, Yoshio; Sato, Kei

2018-04-10

The apolipoprotein B mRNA-editing enzyme catalytic polypeptide-like 3 (APOBEC3; A3) gene family appears only in mammalian genomes. Some A3 proteins can be incorporated into progeny virions and inhibit lentiviral replication. In turn, the lentiviral viral infectivity factor (Vif) counteracts the A3-mediated antiviral effect by degrading A3 proteins. Recent investigations have suggested that lentiviral vif genes evolved to combat mammalian APOBEC3 proteins, and have further proposed that the Vif-A3 interaction may help determine the co-evolutionary history of cross-species lentiviral transmission in mammals. Here we address the co-evolutionary relationship between two New World felids, the puma (Puma concolor) and the bobcat (Lynx rufus), and their lentiviruses, which are designated puma lentiviruses (PLVs). We demonstrate that PLV-A Vif counteracts the antiviral action of APOBEC3Z3 (A3Z3) of both puma and bobcat, whereas PLV-B Vif counteracts only puma A3Z3. The species specificity of PLV-B Vif is irrespective of the phylogenic relationships of feline species in the genera Puma, Lynx and Acinonyx. We reveal that the amino acid at position 178 in the puma and bobcat A3Z3 is exposed on the protein surface and determines the sensitivity to PLV-B Vif-mediated degradation. Moreover, although both the puma and bobcat A3Z3 genes are polymorphic, their sensitivity/resistance to PLV Vif-mediated degradation is conserved. To the best of our knowledge, this is the first study suggesting that the host A3 protein potently controls inter-genus lentiviral transmission. Our findings provide the first evidence suggesting that the co-evolutionary arms race between lentiviruses and mammals has occurred in the New World.

Snapshot of Viral Infections in Wild Carnivores Reveals Ubiquity of Parvovirus and Susceptibility of Egyptian Mongoose to Feline Panleukopenia Virus

PubMed Central

Duarte, Margarida D.; Henriques, Ana Margarida; Barros, Sílvia Carla; Fagulha, Teresa; Mendonça, Paula; Carvalho, Paulo; Monteiro, Madalena; Fevereiro, Miguel; Basto, Mafalda P.; Rosalino, Luís Miguel; Barros, Tânia; Bandeira, Victor; Fonseca, Carlos; Cunha, Mónica V.

2013-01-01

endangered Iberian lynx (Lynx pardinus). PMID:23527182

Increased flexibility for modeling telemetry and nest-survival data using the multistate framework

USGS Publications Warehouse

Devineau, Olivier; Kendall, William L.; Doherty, Paul F.; Shenk, Tanya M.; White, Gary C.; Lukacs, Paul M.; Burnham, Kenneth P.

2014-01-01

Although telemetry is one of the most common tools used in the study of wildlife, advances in the analysis of telemetry data have lagged compared to progress in the development of telemetry devices. We demonstrate how standard known-fate telemetry and related nest-survival data analysis models are special cases of the more general multistate framework. We present a short theoretical development, and 2 case examples regarding the American black duck and the mallard. We also present a more complex lynx data analysis. Although not necessary in all situations, the multistate framework provides additional flexibility to analyze telemetry data, which may help analysts and biologists better deal with the vagaries of real-world data collection.

Military helicopter cockpit modernization

NASA Astrophysics Data System (ADS)

Hall, Andrew S.

2001-09-01

This paper describes some of the initiatives being progressed by Smiths Aerospace to enhance the operational effectiveness of military helicopters, with particular emphasis on the GWHL Lynx and EH Industries EH101 programs. The areas discussed include engine instrumentation, flight instrumentation and the mission system displays. Various Crew Stations are described which provide a suite of AMLCD displays which: -Integrate information from the aircraft engine, electrical power and hydraulic systems onto 5ATI displays -Integrate primary flight, navigation and mission system sensor information onto large area (61/4' square or 6' by 8') displays -Provide standby attitude and air data information in the event of major system failure on 3ATI displays.

A simple, inexpensive video camera setup for the study of avian nest activity

USGS Publications Warehouse

Sabine, J.B.; Meyers, J.M.; Schweitzer, Sara H.

2005-01-01

Time-lapse video photography has become a valuable tool for collecting data on avian nest activity and depredation; however, commercially available systems are expensive (>USA $4000/unit). We designed an inexpensive system to identify causes of nest failure of American Oystercatchers (Haematopus palliatus) and assessed its utility at Cumberland Island National Seashore, Georgia. We successfully identified raccoon (Procyon lotor), bobcat (Lynx rufus), American Crow (Corvus brachyrhynchos), and ghost crab (Ocypode quadrata) predation on oystercatcher nests. Other detected causes of nest failure included tidal overwash, horse trampling, abandonment, and human destruction. System failure rates were comparable with commercially available units. Our system's efficacy and low cost (<$800) provided useful data for the management and conservation of the American Oystercatcher.

Magnetic Calorimeter Arrays with High Sensor Inductance and Dense Wiring

NASA Astrophysics Data System (ADS)

Stevenson, T. R.; Balvin, M. A.; Bandler, S. R.; Devasia, A. M.; Nagler, P. C.; Smith, S. J.; Yoon, W.

2018-05-01

We describe prototype arrays of magnetically coupled microcalorimeters fabricated with an approach scalable to very large format arrays. The superconducting interconnections and sensor coils have sufficiently low inductance in the wiring and sufficiently high inductance in the coils in each pixel, to enable arrays containing greater than 4000 sensors and 100,000 X-ray absorbers to be used in future astrophysics missions such as Lynx. We have used projection lithography to create submicron patterns (e.g., 400 nm lines and spaces) in our niobium sensor coils and wiring, integrated with gold-erbium sensor films and gold X-ray absorbers. Our prototype devices will explore the device physics of metallic magnetic calorimeters as feature sizes are reduced to nanoscale.

KSC-2012-4577

NASA Image and Video Library

2012-08-23

CAPE CANAVERAL, Fla. - At NASA's Kennedy Space Center in Florida, XCOR Director of Flight Test Operations Rick Searfoss, a former NASA astronaut, addresses guests at a presentation during which XCOR Aerospace announced plans to open a manufacturing operation in Brevard County. Space Florida President Frank DiBello is seated to the right. The company's suborbital Lynx Mark II spacecraft possibly will take off and land at Kennedy's shuttle landing facility. XCOR Aerospace is a small, privately held California corporation with focus on the research, development, project management and production of reusable launch vehicles, rocket engines and rocket propulsion systems. XCOR will focus on space tourism, experimental flights and launching satellites. Photo credit: NASA/ Frankie Martin

KSC-2012-4574

NASA Image and Video Library

2012-08-23

CAPE CANAVERAL, Fla. - At NASA's Kennedy Space Center in Florida, Lynda Weatherman, President of the Economic Development Commission of Florida Space Coast, addresses guests at a presentation during which XCOR Aerospace announced plans to open a manufacturing operation in Brevard. Space Florida President Frank DiBello is seated to the right. The company's suborbital Lynx Mark II spacecraft possibly will take off and land at Kennedy's shuttle landing facility. XCOR Aerospace is a small, privately held California corporation with focus on the research, development, project management and production of reusable launch vehicles, rocket engines and rocket propulsion systems. XCOR will focus on space tourism, experimental flights and launching satellites. Photo credit: NASA/ Frankie Martin

VizieR Online Data Catalog: Imaging and spectroscopy in Lynx W (Jorgensen+, 2014)

NASA Astrophysics Data System (ADS)

Jorgensen, I.; Chiboucas, K.; Toft, S.; Bergmann, M.; Zirm, A.; Schiavon, R. P.; Grutzbauch, R.

2017-01-01

Ground-based imaging of RX J0848.6+4453 was obtained primarily to show the performance gain provided by replacing the original E2V charge-coupled devices (E2V CCDs) in Gemini Multi-Object Spectrograph on Gemini North (GMOS-N) with E2V Deep Depletion CCDs (E2V DD CCDs). This replacement was done in 2011 October. Imaging of RX J0848.6+4453 was obtained with the original E2V CCDs in 2011 October (UT 2011 Oct 1 to 2011 Oct 2; Program ID: GN-2011B-DD-3) and repeated with the E2V DD CCDs in 2011 November. The imaging was done in the z' filter. For the observations with the original E2V CCDs the total exposure time was 60 minutes (obtained as 12 five-minute exposures) and the co-added image had an image quality of FWHM=0.52'' measured from point sources in the field. For the E2V DD CCDs a total exposure time of 55 minutes was obtained and the resulting image quality was FWHM=0.51''. Imaging of RX J0848.6+4453 was also obtained with Hubble Space Telescope /Advanced Camera for Surveys (HST/ACS using the filters F775W and F850LP) under the program ID 9919. The spectroscopic observations were obtained in multi-object spectroscopic (MOS) mode with GMOS-N (UT 2011 Nov 24 to 2012 Jan 4, Program ID: GN-2011B-DD-5; UT 2013 Mar 9 to 2013 May 18, Program ID: GN-2013A-Q-65). Table10 lists the photometric parameters for the spectroscopic sample as derived from the HST/ACS observations in F850LP and F775W. Tables 11 and 12 list the results from the template fitting and the derived line strengths, respectively. (3 data files).

Novel Gammaherpesviruses in North American Domestic Cats, Bobcats, and Pumas: Identification, Prevalence, and Risk Factors

PubMed Central

Beatty, Julia A.; Stutzman-Rodriguez, Kathryn R.; Carver, Scott; Lozano, Caitlin C.; Lee, Justin S.; Lappin, Michael R.; Riley, Seth P. D.; Serieys, Laurel E. K.; Logan, Kenneth A.; Sweanor, Linda L.; Boyce, Walter M.; Vickers, T. Winston; McBride, Roy; Crooks, Kevin R.; Lewis, Jesse S.; Cunningham, Mark W.; Rovnak, Joel; Quackenbush, Sandra L.; VandeWoude, Sue

2014-01-01

ABSTRACT Gammaherpesviruses (GHVs) are a diverse and rapidly expanding group of viruses associated with a variety of disease conditions in humans and animals. To identify felid GHVs, we screened domestic cat (Felis catus), bobcat (Lynx rufus), and puma (Puma concolor) blood cell DNA samples from California, Colorado, and Florida using a degenerate pan-GHV PCR. Additional pan-GHV and long-distance PCRs were used to sequence a contiguous 3.4-kb region of each putative virus species, including partial glycoprotein B and DNA polymerase genes. We identified three novel GHVs, each present predominantly in one felid species: Felis catus GHV 1 (FcaGHV1) in domestic cats, Lynx rufus GHV 1 (LruGHV1) in bobcats, and Puma concolor GHV 1 (PcoGHV1) in pumas. To estimate infection prevalence, we developed real-time quantitative PCR assays for each virus and screened additional DNA samples from all three species (n = 282). FcaGHV1 was detected in 16% of domestic cats across all study sites. LruGHV1 was detected in 47% of bobcats and 13% of pumas across all study sites, suggesting relatively common interspecific transmission. PcoGHV1 was detected in 6% of pumas, all from a specific region of Southern California. The risk of infection for each host varied with geographic location. Age was a positive risk factor for bobcat LruGHV1 infection, and age and being male were risk factors for domestic cat FcaGHV1 infection. Further characterization of these viruses may have significant health implications for domestic cats and may aid studies of free-ranging felid ecology. IMPORTANCE Gammaherpesviruses (GHVs) establish lifelong infection in many animal species and can cause cancer and other diseases in humans and animals. In this study, we identified the DNA sequences of three GHVs present in the blood of domestic cats (Felis catus), bobcats (Lynx rufus), and pumas (Puma concolor; also known as mountain lions, cougars, and panthers). We found that these viruses were closely related to, but

Metabolite characterization of a novel sedative drug, remimazolam in human plasma and urine using ultra high-performance liquid chromatography coupled with synapt high-definition mass spectrometry.

PubMed

Zhou, Ying; Hu, Pei; Jiang, Ji

2017-04-15

Remimazolam is a new chemical entity belonging to the benzodiazepine class of sedative drugs, which shows faster-acting onset and recovery than currently available short-acting sedatives. In the present study, ultra high performance liquid chromatography with synapt high-definition mass spectrometry method combined with MassLynx software was established to characterize metabolites of remimazolam in human plasma and urine. In total, 5 human metabolites were detected, including 3 phase I and 2 phase II metabolites. There was no novel human metabolite detected compared to that in rat. Hydrolysis, glucuronidation and oxidation were the major metabolic reactions. To our knowledge, this is the first report of the human metabolic profile of remimazolam. Copyright © 2017 Elsevier B.V. All rights reserved.

Measurements of atmospheric turbulence effects on tail rotor acoustics

NASA Technical Reports Server (NTRS)

Hagen, Martin J.; Yamauchi, Gloria K.; Signor, David B.; Mosher, Marianne

1994-01-01

Results from an outdoor hover test of a full-scale Lynx tail rotor are presented. The investigation was designed to further the understanding of the acoustics of an isolated tail rotor hovering out-of-ground effect in atmospheric turbulence, without the effects of the main rotor wake or other helicopter components. Measurements include simultaneous rotor performance, noise, inflow, and far-field atmospheric turbulence. Results with grid-generated inflow turbulence are also presented. The effects of atmospheric turbulence ingestion on rotor noise are quantified. In contradiction to current theories, increasing rotor inflow and rotor thrust were found to increase turbulence ingestion noise. This is the final report of Task 13A--Helicopter Tail Rotor Noise, of the NASA/United Kingdom Defense Research Agency cooperative Aeronautics Research Program.

Pleistocene and ecological effects on continental-scale genetic differentiation in the bobcat (Lynx rufus).

PubMed

Reding, Dawn M; Bronikowski, Anne M; Johnson, Warren E; Clark, William R

2012-06-01

The potential for widespread, mobile species to exhibit genetic structure without clear geographic barriers is a topic of growing interest. Yet the patterns and mechanisms of structure--particularly over broad spatial scales--remain largely unexplored for these species. Bobcats occur across North America and possess many characteristics expected to promote gene flow. To test whether historical, topographic or ecological factors have influenced genetic differentiation in this species, we analysed 1 kb mtDNA sequence and 15 microsatellite loci from over 1700 samples collected across its range. The primary signature in both marker types involved a longitudinal cline with a sharp transition, or suture zone, occurring along the Great Plains. Thus, the data distinguished bobcats in the eastern USA from those in the western half, with no obvious physical barrier to gene flow. Demographic analyses supported a scenario of expansion from separate Pleistocene refugia, with the Great Plains representing a zone of secondary contact. Substructure within the two main lineages likely reflected founder effects, ecological factors, anthropogenic/topographic effects or a combination of these forces. Two prominent topographic features, the Mississippi River and Rocky Mountains, were not supported as significant genetic barriers. Ecological regions and environmental correlates explained a small but significant proportion of genetic variation. Overall, results implicate historical processes as the primary cause of broad-scale genetic differentiation, but contemporary forces seem to also play a role in promoting and maintaining structure. Despite the bobcat's mobility and broad niche, large-scale landscape changes have contributed to significant and complex patterns of genetic structure. © 2012 Blackwell Publishing Ltd.

Multi-species genetic connectivity in a terrestrial habitat network.

PubMed

Marrotte, Robby R; Bowman, Jeff; Brown, Michael G C; Cordes, Chad; Morris, Kimberley Y; Prentice, Melanie B; Wilson, Paul J

2017-01-01

Habitat fragmentation reduces genetic connectivity for multiple species, yet conservation efforts tend to rely heavily on single-species connectivity estimates to inform land-use planning. Such conservation activities may benefit from multi-species connectivity estimates, which provide a simple and practical means to mitigate the effects of habitat fragmentation for a larger number of species. To test the validity of a multi-species connectivity model, we used neutral microsatellite genetic datasets of Canada lynx ( Lynx canadensis ), American marten ( Martes americana ), fisher ( Pekania pennanti ), and southern flying squirrel ( Glaucomys volans ) to evaluate multi-species genetic connectivity across Ontario, Canada. We used linear models to compare node-based estimates of genetic connectivity for each species to point-based estimates of landscape connectivity (current density) derived from circuit theory. To our knowledge, we are the first to evaluate current density as a measure of genetic connectivity. Our results depended on landscape context: habitat amount was more important than current density in explaining multi-species genetic connectivity in the northern part of our study area, where habitat was abundant and fragmentation was low. In the south however, where fragmentation was prevalent, genetic connectivity was correlated with current density. Contrary to our expectations however, locations with a high probability of movement as reflected by high current density were negatively associated with gene flow. Subsequent analyses of circuit theory outputs showed that high current density was also associated with high effective resistance, underscoring that the presence of pinch points is not necessarily indicative of gene flow. Overall, our study appears to provide support for the hypothesis that landscape pattern is important when habitat amount is low. We also conclude that while current density is proportional to the probability of movement per unit area

Ups and downs of space tourism development in 60 years from moon register to spaceshiptwo CRASH

NASA Astrophysics Data System (ADS)

Chang, Yi-Wei; Chern, Jeng-Shing

2016-10-01

In human imagination, dreams and expectations, the sequence of ;space tourism; has most likely been Moon tourism, Earth orbital tourism and then suborbital tourism. But the sequence in actual development is the reverse: first Earth suborbital tourism, then orbital tourism, and finally Moon tourism. In 1954, three years before the successful launch of the first human artificial satellite, the world's oldest travel company, Thomas Cook in Britain, initiated the ;Moon Register.; Enthusiasts could sign an option for a commercial trip to the Moon and the company guaranteed to provide tickets at the earliest possible date. Sixty years later on 31st October 2014, the first SpaceShip Two (SS2) of Virgin Galactic developed for commercial suborbital space tourism (SST) and scientific research crashed at the Mojave Desert in California during test flight. Although the first privately paid space tourist had traveled to the International Space Station in 2001, this was only for millionaires and not the general public. In 2004, although SpaceShipOne won the Ansari X prize and shed the first light on SST, the commercial SST operations originally planned to be realized in 2008 are now long overdue. The SS2 has been just one of the reusable suborbital launch vehicles developed for SST and other purposes, with others including the Lynx, Spaceplane and Dream Chaser. However a tragedy in which the SS2 crashed and caused the sacrifice of one senior test pilot alerted tourists that the long overdue of SST might still be a few years away. The purposes of this paper are to review and discuss the ups and downs of space tourism development in the 60 years from 1954 to 2014, and to look forward to get more clear future from the unveiling of second SS2 on 19th February 2016 and the continuous development of Lynx Mark I. However in any case, there are still many constraints including economy.

Design and Optimization of Multi-Pixel Transition-Edge Sensors for X-Ray Astronomy Applications

NASA Technical Reports Server (NTRS)

Smith, Stephen J.; Adams, Joseph S.; Bandler, Simon R.; Chervenak, James A.; Datesman, Aaron Michael; Eckart, Megan E.; Ewin, Audrey J.; Finkbeiner, Fred M.; Kelley, Richard L.; Kilbourne, Caroline A.;

Ultra high performance liquid chromatography coupled to quadruple time-of-flight with MS(E) technology used for qualitative analysis of non-volatile oxidation markers in sliced packed mushrooms (Agaricus Bisporus).

PubMed

Wrona, Magdalena; Pezo, Davinson; Canellas, Elena; Nerín, Cristina

2016-02-05

61 different non-volatile compounds were determined in Agaricus Bisporus sliced mushrooms using UHPLC/Q-TOF with MS(E) technology. Both positive and negative electrospray ionization were applied. Chemical profile of three parts of mushroom was created: cap, gills and stipe. The analysed mushrooms were oxidized to identify the non-volatile markers in their parts. MarkerLynx(®) was proposed as a powerful tool to distinguish mushrooms purchased in different countries (Spain and Portugal) by determining their non-volatile markers. Some metabolites were identified. Surprisingly a mix of polyethylene glycols (PEGs) was detected in cap and gills of mushrooms. Whole mushrooms were considered as vegetable resistant to migration from packaging compounds. Additionally migration tests were performed to determine the source of migrating compounds. Copyright © 2016 Elsevier B.V. All rights reserved.

Searching the SOHO online catalogs

NASA Technical Reports Server (NTRS)

Thompson, William; Yurow, Ron

1994-01-01

The SOHO on-line catalogs will contain information about the observations from several made or planned campaigns, that must be available to scientists who wish to use SOHO data. The World Wide Web (WWW) was chosen as the interface to the SOHO on-line catalogs, because it is easy to use, well suited to a geographically distributed user community, and freely available. Through the use of a forms-capable WWW client such as Mosaic or Lynx, a scientist will be able to browse through the catalogs of observations in a very simple, self explanatory way. Data files can then be selected from the returned lists for either immediate transferring or sending on tape by mail, with appropriate checks for whether data is in the public domain or not.

Behavioral profiles of the captive juvenile whooping crane as an indicator of post-release survival

USGS Publications Warehouse

Kreger, M.D.; Hatfield, J.S.; Estevez, I.; Gee, G.F.; Clugston, D.A.

2006-01-01

Predation by bobcats (Lynx rufus) is the major cause of mortality in captive-reared whooping cranes (Grus americana) released into the wild to establish a nonmigratory flock in Florida. This study investigated whether rearing methods (parent-rearing, hand-rearing, or hand-rearing with exercise) of cranes, and behaviors observed in birds either before or shortly after release in the wild, are associated with survival after release. Rearing methods did not affect survival first year post-release, which was 55 ? 8% in 2 yr (1999 and 2000). Logistic regression revealed, however, that foraging bouts (+), walking bouts (-), and body weight (-) before release, and nonvigilant bouts (-) after release were significantly associated with survival. These results suggest that post-release survival of whooping cranes might be increased by rearing techniques that promote foraging.

Advantages and Challenges of 10-Gbps Transmission on High-Density Interconnect Boards

NASA Astrophysics Data System (ADS)

Yee, Chang Fei; Jambek, Asral Bahari; Al-Hadi, Azremi Abdullah

2016-06-01

This paper provides a brief introduction to high-density interconnect (HDI) technology and its implementation on printed circuit boards (PCBs). The advantages and challenges of implementing 10-Gbps signal transmission on high-density interconnect boards are discussed in detail. The advantages (e.g., smaller via dimension and via stub removal) and challenges (e.g., crosstalk due to smaller interpair separation) of HDI are studied by analyzing the S-parameter, time-domain reflectometry (TDR), and transmission-line eye diagrams obtained by three-dimensional electromagnetic modeling (3DEM) and two-dimensional electromagnetic modeling (2DEM) using Mentor Graphics HyperLynx and Keysight Advanced Design System (ADS) electronic computer-aided design (ECAD) software. HDI outperforms conventional PCB technology in terms of signal integrity, but proper routing topology should be applied to overcome the challenge posed by crosstalk due to the tight spacing between traces.

Improving the Multi-Wavelength Capability of Chandra Large Programs

NASA Astrophysics Data System (ADS)

Pacucci, Fabio

2017-09-01

In order to fully exploit the joint Chandra/JWST/HST ventures to detect faint sources, we urgently need an advanced matching algorithm between optical/NIR and X-ray catalogs/images. This will be of paramount importance in bridging the gap between upcoming optical/NIR facilities (JWST) and later X-ray ones (Athena, Lynx). We propose to develop an advanced and automated tool to improve the identification of Chandra X-ray counterparts detected in deep optical/NIR fields based on T-PHOT, a software widely used in the community. The developed code will include more than 20 years in advancements of X-ray data analysis and will be released to the public. Finally, we will release an updated catalog of X-ray sources in the CANDELS regions: a leap forward in our endeavor of charting the Universe.

Early-type galaxies: mass-size relation at z ˜ 1.3 for different environments

NASA Astrophysics Data System (ADS)

Raichoor, A.; Mei, S.; Stanford, S. A.; Holden, B. P.; Nakata, F.; Rosati, P.; Shankar, F.; Tanaka, M.; Ford, H.; Huertas-Company, M.; Illingworth, G.; Kodama, T.; Postman, M.; Rettura, A.; Blakeslee, J. P.; Demarco, R.; Jee, M. J.; White, R. L.

2011-12-01

We combine multi-wavelength data of the Lynx superstructure and GOODS/CDF-S to build a sample of 75 visually selected early-type galaxies (ETGs), spanning different environments (cluster/group/field) at z ˜ 1.3. By estimating their mass, age (SED fitting, with a careful attention to the stellar population model used) and size, we are able to probe the dependence on the environment of the mass-size relation. We find that, for ETGs with 10^{10} < M / M_⊙ < 10^{11.5}, (1) the mass-size relation in the field did not evolve overall from z ˜ 1.3 to present; (2) the mass-size relation in cluster/group environments at z ˜ 1.3 lies at smaller sizes than the local mass-size relation (R_{e,z ˜ 1.3}/R_{e,z = 0} ˜ 0.6-0.8).

Experimental and numerical study of the British Experimental Rotor Programme blade

NASA Technical Reports Server (NTRS)

Brocklehurst, Alan; Duque, Earl P. N.

1990-01-01

Wind-tunnel tests on the British Experimental Rotor Programme (BERP) tip are described, and the results are compared with computational fluid dynamics (CFD) results. The test model was molded using the Lynx-BERP blade tooling to provide a semispan, cantilever wing comprising the outboard 30 percent of the rotor blade. The tests included both surface-pressure measurements and flow visualization to obtain detailed information of the flow over the BERP tip for a range of angles of attack. It was observed that, outboard of the notch, favorable pressure gradients exist which ensure attached flow, and that the tip vortex also remains stable to large angles of attack. On the rotor, these features yield a very gradual break in control loads when the retreating-blade limit is eventually reached. Computational and experimental results were generally found to be in good agreement.

Using experimentation to understand the 10-year snowshoe hare cycle in the boreal forest of North America.

PubMed

Krebs, Charles J; Boonstra, Rudy; Boutin, Stan

2018-01-01

Population cycles have long fascinated ecologists from the time of Charles Elton in the 1920s. The discovery of large population fluctuations in undisturbed ecosystems challenged the idea that pristine nature was in a state of balance. The 10-year cycle of snowshoe hares (Lepus americanus Erxleben) across the boreal forests of Canada and Alaska is a classic cycle, recognized by fur traders for more than 300 years. Since the 1930s, ecologists have investigated the mechanisms that might cause these cycles. Proposed causal mechanisms have varied from sunspots to food supplies, parasites, diseases, predation and social behaviour. Both the birth rate and the death rate change dramatically over the cycle. Social behaviour was eliminated as a possible cause because snowshoe hares are not territorial and do not commit infanticide. Since the 1960s, large-scale manipulative experiments have been used to discover the major limiting factors. Food supply and predation quickly became recognized as potential key factors causing the cycle. Experiments adding food and restricting predator access to field populations have been decisive in pinpointing predation as the key mechanism causing these fluctuations. The immediate cause of death of most snowshoe hares is predation by a variety of predators, including the Canada lynx (Lynx canadensis Kerr). The collapse in the reproductive rate is not due to food shortage as was originally thought, but is a result of chronic stress from predator chases. Five major issues remain unresolved. First, what is the nature of the predator-induced memory that results in the prolonged low phase of the cycle? Second, why do hare cycles form a travelling wave, starting in the centre of the boreal forest in Saskatchewan and travelling across western Canada and Alaska? Third, why does the amplitude of the cycle vary greatly from one cycle to the next in the same area? Fourth, do the same mechanisms of population limitation apply to snowshoe hares in

Seasonal Effects of Habitat on Sources and Rates of Snowshoe Hare Predation in Alaskan Boreal Forests.

PubMed

Feierabend, Dashiell; Kielland, Knut

2015-01-01

Survival and predation of snowshoe hares (Lepus americanus) has been widely studied, yet there has been little quantification of the changes in vulnerability of hares to specific predators that may result from seasonal changes in vegetation and cover. We investigated survival and causes of mortalities of snowshoe hares during the late increase, peak, and decline of a population in interior Alaska. From June 2008 to May 2012, we radio-tagged 288 adult and older juvenile hares in early successional and black spruce (Picea mariana) forests and, using known-fate methods in program MARK, evaluated 85 survival models that included variables for sex, age, and body condition of hares, as well as trapping site, month, season, year, snowfall, snow depth, and air temperature. We compared the models using Akaike's information criterion with correction for small sample size. Model results indicated that month, capture site, and body condition were the most important variables in explaining survival rates. Survival was highest in July, and more generally during summer, when alternative prey was available to predators of hares. Low survival rates coincided with molting periods, breeding activity in the spring, and the introduction of juveniles to the sample population in the fall. We identified predation as the cause of mortality in 86% of hare deaths. When the source of predation could be determined, hares were killed more often by goshawks (Accipiter gentilis) than other predators in early successional forest (30%), and more often by lynx (Lynx canadensis) than other predators in black spruce forest (31%). Great horned owls (Bubo virginianus) and coyotes (Canis latrans) represented smaller proportions of hare predation, and non-predatory causes were a minor source (3%) of mortality. Because hares rely on vegetative cover for concealment from predators, we measured cover in predation sites and habitats that the hares occupied and concluded that habitat type had a greater

Seasonal Effects of Habitat on Sources and Rates of Snowshoe Hare Predation in Alaskan Boreal Forests

PubMed Central

Feierabend, Dashiell; Kielland, Knut

2015-01-01

Survival and predation of snowshoe hares (Lepus americanus) has been widely studied, yet there has been little quantification of the changes in vulnerability of hares to specific predators that may result from seasonal changes in vegetation and cover. We investigated survival and causes of mortalities of snowshoe hares during the late increase, peak, and decline of a population in interior Alaska. From June 2008 to May 2012, we radio-tagged 288 adult and older juvenile hares in early successional and black spruce (Picea mariana) forests and, using known-fate methods in program MARK, evaluated 85 survival models that included variables for sex, age, and body condition of hares, as well as trapping site, month, season, year, snowfall, snow depth, and air temperature. We compared the models using Akaike’s information criterion with correction for small sample size. Model results indicated that month, capture site, and body condition were the most important variables in explaining survival rates. Survival was highest in July, and more generally during summer, when alternative prey was available to predators of hares. Low survival rates coincided with molting periods, breeding activity in the spring, and the introduction of juveniles to the sample population in the fall. We identified predation as the cause of mortality in 86% of hare deaths. When the source of predation could be determined, hares were killed more often by goshawks (Accipiter gentilis) than other predators in early successional forest (30%), and more often by lynx (Lynx canadensis) than other predators in black spruce forest (31%). Great horned owls (Bubo virginianus) and coyotes (Canis latrans) represented smaller proportions of hare predation, and non-predatory causes were a minor source (3%) of mortality. Because hares rely on vegetative cover for concealment from predators, we measured cover in predation sites and habitats that the hares occupied and concluded that habitat type had a greater

Prevalence of Cryptosporidium species in wildlife populations within a watershed landscape in southeastern New York State.

PubMed

Ziegler, Peter E; Wade, Susan E; Schaaf, Stephanie L; Stern, David A; Nadareski, Christopher A; Mohammed, Hussni O

2007-06-20

A cross-sectional study was conducted to determine the prevalence of Cryptosporidium in wildlife in the New York City (NYC) Watershed in southeastern New York State. A total of 6227 fecal samples were collected and evaluated from 5892 mammals (38 species), 263 birds (14 species), 2 reptiles (2 species), 8 amphibians (4 species), and 62 fish (15 species). Cryptosporidium was detected in 30 species. Of the species found positive for Cryptosporidium, 16 represented new records for this parasite-Alosa pseudoharengus, Larus delawarensis, Blarina brevicauda, Sorex cinereus, Parascalops breweri, Myotis lucifugus, Peromyscus maniculatus, Microtus pennsylvanicus, Clethrionomys gapperi, Tamiasciurus hudsonicus, Marmota monax, Erethizon dorsatum, Canis latrans, Mustela erminea, Mustela vison, and Lynx rufus. Factors such as age, sex, season, and land use were evaluated to determine if there was any association with infection by this parasite. Animals were more likely to be positive for Cryptosporidium during spring and in agricultural land use.

Using environmental features to model highway crossing behavior of Canada lynx in the Southern Rocky Mountains.

DOT National Transportation Integrated Search

2015-07-21

Carnivores are particularly sensitive to reductions in population connectivity caused by human disturbance and habitat fragmentation. Permeability of transportation corridors to carnivore movements is central to species conservation given the large s...

Linking movement behavior and fine-scale genetic structure to model landscape connectivity for bobcats (Lynx rufus)

Treesearch

Dawn M. Reding; Samuel A. Cushman; Todd E. Gosselink; William R. Clark

2013-01-01

Spatial heterogeneity can constrain the movement of individuals and consequently genes across a landscape, influencing demographic and genetic processes. In this study, we linked information on landscape composition, movement behavior, and genetic differentiation to gain a mechanistic understanding of how spatial heterogeneity may influence movement and gene flow of...

Using environmental features to model highway crossing behavior of Canada lynx in the Southern Rocky Mountains

Treesearch

Phillip E. Baigas; John R. Squires; Lucretia E. Olson; Jacob S. Ivan; Elizabeth. K. Roberts

2017-01-01

Carnivores are particularly sensitive to reductions in population connectivity caused by human disturbance and habitat fragmentation. Permeability of transportation corridors to carnivore movements is central to species conservation given the large spatial extent of transportation networks and the high mobility of many carnivore species. We investigated the degree to...

Why Do the Boreal Forest Ecosystems of Northwestern Europe Differ from Those of Western North America?

PubMed Central

Boonstra, Rudy; Andreassen, Harry P.; Boutin, Stan; Hušek, Jan; Ims, Rolf A.; Krebs, Charles J.; Skarpe, Christina; Wabakken, Petter

2016-01-01

Abstract The boreal forest is one of the largest terrestrial biomes on Earth. Conifers normally dominate the tree layer across the biome, but other aspects of ecosystem structure and dynamics vary geographically. The cause of the conspicuous differences in the understory vegetation and the herbivore–predator cycles between northwestern Europe and western North America presents an enigma. Ericaceous dwarf shrubs and 3– to 4-year vole–mustelid cycles characterize the European boreal forests, whereas tall deciduous shrubs and 10-year snowshoe hare–lynx cycles characterize the North American ones. We discuss plausible explanations for this difference and conclude that it is bottom-up: Winter climate is the key determinant of the dominant understory vegetation that then determines the herbivore–predator food-web interactions. The crucial unknown for the twenty-first century is how climate change and increasing instability will affect these forests, both with respect to the dynamics of individual plant and animal species and to their community interactions. PMID:28533563

Smoothing Motion Estimates for Radar Motion Compensation.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Doerry, Armin W.

2017-07-01

Simple motion models for complex motion environments are often not adequate for keeping radar data coherent. Eve n perfect motion samples appli ed to imperfect models may lead to interim calculations e xhibiting errors that lead to degraded processing results. Herein we discuss a specific i ssue involving calculating motion for groups of pulses, with measurements only available at pulse-group boundaries. - 4 - Acknowledgements This report was funded by General A tomics Aeronautical Systems, Inc. (GA-ASI) Mission Systems under Cooperative Re search and Development Agre ement (CRADA) SC08/01749 between Sandia National Laboratories and GA-ASI. General Atomics Aeronautical Systems, Inc.more » (GA-ASI), an affilia te of privately-held General Atomics, is a leading manufacturer of Remotely Piloted Aircraft (RPA) systems, radars, and electro-optic and rel ated mission systems, includin g the Predator(r)/Gray Eagle(r)-series and Lynx(r) Multi-mode Radar.« less

Disseminated coccidioidomycosis in a captive Indochinese tiger (Panthera tigris corbetti) with chronic renal disease.

PubMed

Helmick, Kelly E; Koplos, Peter; Raymond, James

2006-12-01

A 19-yr-old, 78.2-kg captive female Indochinese tiger (Panthera tigris corbetti) from the El Paso Zoo (El Paso, Texas, USA) with chronic renal disease was euthanized after a 10-day course of anorexia, depression, progressive rear limb weakness, muscle fasciculations, and head tremors. Postmortem findings included pericardial effusion, generalized lymphadenopathy, glomerulosclerosis, glomerular atrophy with membranous glomerulonephropathy, and pancreatic adenocarcinoma. Pyogranulomatous pneumonia, pericarditis, and lymphadenitis were associated with fungal spherules histomorphologically consistent with Coccidioides immitis. Rising antibodies to C. immitis were detected on samples obtained perimortem and 2 mo before euthanasia. Retrospective serology was negative for two additional Indochinese tigers, two Iranian leopards (Panthera pardus saxicolor), two jaguars (Panthera onca), two bobcats (Lynx rufus texensis), two ocelots (Leopardus pardalis), and three Amur leopards (Panthera pardus orientalis) housed at the zoo over an 8-yr period. Despite being located within the endemic region for C. immitis, this is only the second case of coccidioidomycosis reported from this institution.

Why Do the Boreal Forest Ecosystems of Northwestern Europe Differ from Those of Western North America?

PubMed

Boonstra, Rudy; Andreassen, Harry P; Boutin, Stan; Hušek, Jan; Ims, Rolf A; Krebs, Charles J; Skarpe, Christina; Wabakken, Petter

2016-09-01

The boreal forest is one of the largest terrestrial biomes on Earth. Conifers normally dominate the tree layer across the biome, but other aspects of ecosystem structure and dynamics vary geographically. The cause of the conspicuous differences in the understory vegetation and the herbivore-predator cycles between northwestern Europe and western North America presents an enigma. Ericaceous dwarf shrubs and 3- to 4-year vole-mustelid cycles characterize the European boreal forests, whereas tall deciduous shrubs and 10-year snowshoe hare-lynx cycles characterize the North American ones. We discuss plausible explanations for this difference and conclude that it is bottom-up: Winter climate is the key determinant of the dominant understory vegetation that then determines the herbivore-predator food-web interactions. The crucial unknown for the twenty-first century is how climate change and increasing instability will affect these forests, both with respect to the dynamics of individual plant and animal species and to their community interactions.

Segmentation and classification of road markings using MLS data

NASA Astrophysics Data System (ADS)

Soilán, Mario; Riveiro, Belén; Martínez-Sánchez, Joaquín; Arias, Pedro

2017-01-01

Traffic signs are one of the most important safety elements in a road network. Particularly, road markings provide information about the limits and direction of each road lane, or warn the drivers about potential danger. The optimal condition of road markings contributes to a better road safety. Mobile Laser Scanning technology can be used for infrastructure inspection and specifically for traffic sign detection and inventory. This paper presents a methodology for the detection and semantic characterization of the most common road markings, namely pedestrian crossings and arrows. The 3D point cloud data acquired by a LYNX Mobile Mapper system is filtered in order to isolate reflective points in the road, and each single element is hierarchically classified using Neural Networks. State of the art results are obtained for the extraction and classification of the markings, with F-scores of 94% and 96% respectively. Finally, data from classified markings are exported to a GIS layer and maintenance criteria based on the aforementioned data are proposed.

Population trends for common prairie pothole carnivores

USGS Publications Warehouse

Greenwood, Raymond J.; Sovada, Marsha A.; Mac, M.J.; Opler, P.A.; Puckett Haecker, C. E.; Doran, P.D.

1998-01-01

Since settlement of the prairie pothole region of the northern Great Plains by Europeans in the late 1800’s, carnivore populations have changed considerably—mostly due to habitat alteration and humaninflicted mortality. At least 19 species of carnivorous mammals once occurred in the prairie pothole region (Jones et al. 1983). Presently, only eight are common throughout the region—coyote, red fox, raccoon, American badger, striped skunk, mink, ermine, and long-tailed weasel (Sargeant et al. 1993). Other species that occur locally or intermittently are mountain lion, lynx, bobcat, gray wolf, gray fox, swift fox, spotted skunk, and least weasel. Grizzly bears, wolverines, and river otters once occurred in the region but are now extirpated. Competition among species affects the distribution of coyotes, wolves, and foxes (Carbyn 1982; Rudzinski et al. 1982; Sargeant et al. 1987; Bailey 1992). These larger canids are keystone species that suppress the distribution of smaller canids (Johnson and Sargeant 1977; Dekker 1989; Johnson et al. 1989).

Metabolite profiling on apple volatile content based on solid phase microextraction and gas-chromatography time of flight mass spectrometry.

PubMed

Aprea, Eugenio; Gika, Helen; Carlin, Silvia; Theodoridis, Georgios; Vrhovsek, Urska; Mattivi, Fulvio

2011-07-15

A headspace SPME GC-TOF-MS method was developed for the acquisition of metabolite profiles of apple volatiles. As a first step, an experimental design was applied to find out the most appropriate conditions for the extraction of apple volatile compounds by SPME. The selected SPME method was applied in profiling of four different apple varieties by GC-EI-TOF-MS. Full scan GC-MS data were processed by MarkerLynx software for peak picking, normalisation, alignment and feature extraction. Advanced chemometric/statistical techniques (PCA and PLS-DA) were used to explore data and extract useful information. Characteristic markers of each variety were successively identified using the NIST library thus providing useful information for variety classification. The developed HS-SPME sampling method is fully automated and proved useful in obtaining the fingerprint of the volatile content of the fruit. The described analytical protocol can aid in further studies of the apple metabolome. Copyright © 2011 Elsevier B.V. All rights reserved.

Re-introduction of Bobcats to Cumberland Island, Georgia, USA: Status and lessons learned after 25 years

USGS Publications Warehouse

Diefenbach, Duane R.; Hansen, Leslie A.; Miller-Butterworth, Cassandra; Bohling, Justin H.; Warren, Robert J.; Conroy, Michael J.; Soorae, Pritpal S.

2013-01-01

The bobcat (Lynx rufus) is a medium-sized spotted cat (4 - 18 kg), widely distributed in North America. Bobcats are legally harvestable in most of their range, and are currently classified as Least Concern by IUCN and listed in Appendix II of CITES, due to similarity of appearance with other spotted cat species. Bobcats in the coastal plain region of Georgia, USA, occur at densities of 0.4 - 0.6 per km2. The most common prey of bobcats across most of their range are cottontail rabbit species (Sylvilagus sp). Cumberland Island is the largest of Georgia’s Atlantic coastal barrier islands. Since 1972, approximately 80% of the island has been administered by the National Park Service as Cumberland Island National Seashore (CINS). The island has a subtropical climate and contains approximately 85 km2of upland habitat. It is accessible only by boat or small plane. Thirty-two bobcats were released on CINS during 1988 – 1989.

RX J0848.6+4453: The evolution of galaxy sizes and stellar populations in A z = 1.27 cluster

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jørgensen, Inger; Chiboucas, Kristin; Schiavon, Ricardo P.

2014-12-01

RX J0848.6+4453 (Lynx W) at redshift 1.27 is part of the Lynx Supercluster of galaxies. We present an analysis of the stellar populations and star formation history for a sample of 24 members of the cluster. Our study is based on deep optical spectroscopy obtained with Gemini North combined with imaging data from Hubble Space Telescope. Focusing on the 13 bulge-dominated galaxies for which we can determine central velocity dispersions, we find that these show a smaller evolution with redshift of sizes and velocity dispersions than reported for field galaxies and galaxies in poorer clusters. Our data show that themore » galaxies in RX J0848.6+4453 populate the fundamental plane (FP) similar to that found for lower-redshift clusters. The zero-point offset for the FP is smaller than expected if the cluster's galaxies are to evolve passively through the location of the FP we established in our previous work for z = 0.8-0.9 cluster galaxies and then to the present-day FP. The FP zero point for RX J0848.6+4453 corresponds to an epoch of last star formation at z{sub form}=1.95{sub −0.15}{sup +0.22}. Further, we find that the spectra of the galaxies in RX J0848.6+4453 are dominated by young stellar populations at all galaxy masses and in many cases show emission indicating low-level ongoing star formation. The average age of the young stellar populations as estimated from the strength of the high-order Balmer line Hζ is consistent with a major star formation episode 1-2 Gyr prior, which in turn agrees with z {sub form} = 1.95. These galaxies dominated by young stellar populations are distributed throughout the cluster. We speculate that low-level star formation has not yet been fully quenched in the center of this cluster, possibly because the cluster is significantly poorer than other clusters previously studied at similar redshifts, which appear to have very little ongoing star formation in their centers. The mixture in RX J0848.6+4453 of passive galaxies with young

DNA analysis of hair and scat collected along snow tracks to document the presence of Canada Lynx.

Treesearch

Kevin S. McKelvey; Jeffrey von Kienast; Keith B. Aubry; Gary M. Koehler; Bejamin T. Maletzke; John R. Squires; Edward L. Lindquist; Steve Loch; Michael K. Schwartz

2006-01-01

Snow tracking is often used to inventory carnivore communities, but species identification using this method can produce ambiguous and misleading results. DNA can be extracted from hair and scat samples collected from tracks made in snow. Using DNA analysis could allow positive track identification across a broad range of snow conditions, thus increasing survey...

Conservation of lynx in the United States: A systematic approach to closing critical knowledge gaps [Chapter 17

Treesearch

Keith B. Aubry; Leonard F. Ruggiero; John R. Squires; Kevin S. McKelvey; Gary M. Koehler; Steven W. Buskirk; Charles J. Krebs

2000-01-01

Large-scale ecological studies and assessments are often implemented only after the focus of study generates substantial social, political, or legal pressure to take action (e.g., Thomas et al. 1990; Ruggiero et al. 1991; FEMAT 1993). In such a funding environment, the coordinated planning of research may suffer as the pressure to produce results escalates. To avoid...

Toward a defensible lynx conservation strategy: A framework for planning in the face of uncertainty [Chapter 1

Treesearch

Leonard F. Ruggiero; Kevin S. McKelvey

2000-01-01

On April 2, 1993, the incumbent U.S. President traveled to Portland, Oregon, to intervene in a national political crisis engendered by public concern over the conservation of native wildlife on public lands. Environmentalists had successfully used existing statutes, most notably the National Forest Management Act and pursuant regulations, to shut down timber industry...

Experimental transmission of Cystoisospora felis- like coccidium from bobcat (Lynx rufus) to the domestic cat (Felis catus)

USDA-ARS?s Scientific Manuscript database

Cystoisospora felis is an ubiquitous coccidian of cats. The domestic cat (Felis catus) is its definitive host and several mammalian and avian species are its optional intermediate/transport hosts. Nothing is known if it is transmissible to wild felids. In the present study C. felis-like oocysts were...

Changes in the geographical distribution and abundance of the tick Ixodes ricinus during the past 30 years in Sweden

PubMed Central

2012-01-01

of ticks had increased markedly in LB- and TBE-endemic areas in South (Götaland) and Central Sweden. Conclusions The results suggest that I. ricinus has expanded its range in North Sweden and has become distinctly more abundant in Central and South Sweden during the last three decades. However, in the northern mountain region I. ricinus is still absent. The increased abundance of the tick can be explained by two main factors: First, the high availability of large numbers of important tick maintenance hosts, i.e., cervids, particularly roe deer (Capreolus capreolus) during the last three decades. Second, a warmer climate with milder winters and a prolonged growing season that permits greater survival and proliferation over a larger geographical area of both the tick itself and deer. High reproductive potential of roe deer, high tick infestation rate and the tendency of roe deer to disperse great distances may explain the range expansion of I. ricinus and particularly the appearance of new TBEV foci far away from old TBEV-endemic localities. The geographical presence of LB in Sweden corresponds to the distribution of I. ricinus. Thus, LB is now an emerging disease risk in many parts of North Sweden. Unless countermeasures are undertaken to keep the deer populations, particularly C. capreolus and Dama dama, at the relatively low levels that prevailed before the late 1970s - especially in and around urban areas where human population density is high - by e.g. reduced hunting of red fox (Vulpes vulpes) and lynx (Lynx lynx), the incidences of human LB and TBE are expected to continue to be high or even to increase in Sweden in coming decades. PMID:22233771

Development of a DC propulsion system for an electric vehicle

NASA Technical Reports Server (NTRS)

Kelledes, W. L.

1984-01-01

The suitability of the Eaton automatically shifted mechanical transaxle concept for use in a near-term dc powered electric vehicle is evaluated. A prototype dc propulsion system for a passenger electric vehicle was designed, fabricated, tested, installed in a modified Mercury Lynx vehicle and track tested at the contractor's site. The system consisted of a two-axis, three-speed, automatically-shifted mechanical transaxle, 15.2 Kw rated, separately excited traction motor, and a transistorized motor controller with a single chopper providing limited armature current below motor base speed and full range field control above base speed at up to twice rated motor current. The controller utilized a microprocessor to perform motor and vehicle speed monitoring and shift sequencing by means of solenoids applying hydraulic pressure to the transaxle clutches. Bench dynamometer and track testing was performed. Track testing showed best system efficiency for steady-state cruising speeds of 65-80 Km/Hz (40-50 mph). Test results include acceleration, steady speed and SAE J227A/D cycle energy consumption, braking tests and coast down to characterize the vehicle road load.

On the selection of ordinary differential equation models with application to predator-prey dynamical models.

PubMed

Zhang, Xinyu; Cao, Jiguo; Carroll, Raymond J

2015-03-01

We consider model selection and estimation in a context where there are competing ordinary differential equation (ODE) models, and all the models are special cases of a "full" model. We propose a computationally inexpensive approach that employs statistical estimation of the full model, followed by a combination of a least squares approximation (LSA) and the adaptive Lasso. We show the resulting method, here called the LSA method, to be an (asymptotically) oracle model selection method. The finite sample performance of the proposed LSA method is investigated with Monte Carlo simulations, in which we examine the percentage of selecting true ODE models, the efficiency of the parameter estimation compared to simply using the full and true models, and coverage probabilities of the estimated confidence intervals for ODE parameters, all of which have satisfactory performances. Our method is also demonstrated by selecting the best predator-prey ODE to model a lynx and hare population dynamical system among some well-known and biologically interpretable ODE models. © 2014, The International Biometric Society.

Cosmic veto gamma-spectrometry for Comprehensive Nuclear-Test-Ban Treaty samples

NASA Astrophysics Data System (ADS)

Burnett, J. L.; Davies, A. V.

2014-05-01

The Comprehensive Nuclear-Test-Ban Treaty (CTBT) is supported by a global network of monitoring stations that perform high-resolution gamma-spectrometry on air filter samples for the identification of 85 radionuclides. At the UK CTBT Radionuclide Laboratory (GBL15), a novel cosmic veto gamma-spectrometer has been developed to improve the sensitivity of station measurements, providing a mean background reduction of 80.8% with mean MDA improvements of 45.6%. The CTBT laboratory requirement for a 140Ba MDA is achievable after 1.5 days counting compared to 5-7 days using conventional systems. The system consists of plastic scintillation plates that detect coincident cosmic-ray interactions within an HPGe gamma-spectrometer using the Canberra LynxTM multi-channel analyser. The detector is remotely configurable using a TCP/IP interface and requires no dedicated coincidence electronics. It would be especially useful in preventing false-positives at remote station locations (e.g. Halley, Antarctica) where sample transfer to certified laboratories is logistically difficult. The improved sensitivity has been demonstrated for a CTBT air filter sample collected after the Fukushima incident.

Serologic survey for Toxoplasma gondii in wild animals in Florida.

PubMed

Burridge, M J; Bigler, W J; Forrester, D J; Hennemann, J M

1979-11-01

Blood samples were collected for serum separation from 114 species of wild animals (25 species of mammals, 82 species of birds, and 7 species of reptiles) in Florida. Each of the 3,471 samples was tested for antibodies to Toxoplasma gondii, using the indirect hemagglutination test. The highest prevalences of T gondii antibodies were 19% in armadillos (Dasypus novemcinctus), 18% in raccoons (Procyon lotor), 13% in black rats (Rattus rattus), and 11% in opossums (Didelphis marsupialis). Antibody prevalences were significantly higher in male than in female raccoons (P less than 0.05) and in adult than in nonadult raccoons and opossums (P less than 0.005). A high proportion of seropositive animals was found in three other mammalian species: 4 of 4 black bears (Ursus americanus), 2 of 3 bobcats (Lynx rufus), and 2 of 8 Norway rats (Rattus norvegicus) tested. Antibodies were found in 8 of the 1,279 avian serums; they were not found in any of the 13 reptilian serums tested. There were no significant geographic variations in antibody prevalence in any species.

The lager yeast Saccharomyces pastorianus removes and transforms Fusarium trichothecene mycotoxins during fermentation of brewer's wort.

PubMed

Nathanail, Alexis V; Gibson, Brian; Han, Li; Peltonen, Kimmo; Ollilainen, Velimatti; Jestoi, Marika; Laitila, Arja

2016-07-15

An investigation was conducted to determine the fate of deoxynivalenol, deoxynivalenol-3-glucoside, HT-2 toxin and T-2 toxin, during a four-day fermentation with the lager yeast Saccharomyces pastorianus. The influence of excessive mycotoxin concentrations on yeast growth, productivity and viability were also assessed. Mycotoxins were dosed at varying concentrations to 11.5° Plato wort. Analysis of yeast revealed that presence of the toxins even at concentrations up to 10,000 μg/L had little or no effect on sugar utilisation, alcohol production, pH, yeast growth or cell viability. Of the dosed toxin amounts 9-34% were removed by the end of fermentation, due to physical binding and/or biotransformation by yeast. Deoxynivalenol-3-glucoside was not reverted to its toxic precursor during fermentation. Processing of full-scan liquid chromatography-quadrupole time-of-flight-mass spectrometry (LC-QTOF-MS) data with MetaboLynx and subsequent LC-QTOF-MS/MS measurements resulted in annotation of several putative metabolites. De(acetylation), glucosylation and sulfonation were the main metabolic pathways activated. Copyright © 2016 Elsevier Ltd. All rights reserved.

Upgrading NASA/DOSE laser ranging system control computers

NASA Technical Reports Server (NTRS)

Ricklefs, Randall L.; Cheek, Jack; Seery, Paul J.; Emenheiser, Kenneth S.; Hanrahan, William P., III; Mcgarry, Jan F.

1993-01-01

Laser ranging systems now managed by the NASA Dynamics of the Solid Earth (DOSE) and operated by the Bendix Field Engineering Corporation, the University of Hawaii, and the University of Texas have produced a wealth on interdisciplinary scientific data over the last three decades. Despite upgrades to the most of the ranging station subsystems, the control computers remain a mix of 1970's vintage minicomputers. These encompass a wide range of vendors, operating systems, and languages, making hardware and software support increasingly difficult. Current technology allows replacement of controller computers at a relatively low cost while maintaining excellent processing power and a friendly operating environment. The new controller systems are now being designed using IBM-PC-compatible 80486-based microcomputers, a real-time Unix operating system (LynxOS), and X-windows/Motif IB, and serial interfaces have been chosen. This design supports minimizing short and long term costs by relying on proven standards for both hardware and software components. Currently, the project is in the design and prototyping stage with the first systems targeted for production in mid-1993.

Urban landscapes can change virus gene flow and evolution in a fragmentation-sensitive carnivore

USGS Publications Warehouse

Fountain-Jones, Nicholas M.; Craft, Meggan E.; Funk, W. Chris; Kozakiewicz, Chris; Trumbo, Daryl; Boydston, Erin E.; Lyren, Lisa M.; Crooks, Kevin R.; Lee, Justin S.; VandeWoude, Sue; Carver, Scott

2017-01-01

Urban expansion has widespread impacts on wildlife species globally, including the transmission and emergence of infectious diseases. However, there is almost no information about how urban landscapes shape transmission dynamics in wildlife. Using an innovative phylodynamic approach combining host and pathogen molecular data with landscape characteristics and host traits, we untangle the complex factors that drive transmission networks of Feline Immunodeficiency Virus (FIV) in bobcats (Lynx rufus). We found that the urban landscape played a significant role in shaping FIV transmission. Even though bobcats were often trapped within the urban matrix, FIV transmission events were more likely to occur in areas with more natural habitat elements. Urban fragmentation also resulted in lower rates of pathogen evolution, possibly owing to a narrower range of host genotypes in the fragmented area. Combined, our findings show that urban landscapes can have impacts on a pathogen and its evolution in a carnivore living in one of the most fragmented and urban systems in North America. The analytical approach used here can be broadly applied to other host-pathogen systems, including humans.

A resolution congratulating the Minnesota Lynx women's basketball team on winning the 2013 Women's National Basketball Association Championship.

THOMAS, 113th Congress

Sen. Franken, Al [D-MN

2013-11-14

Senate - 11/14/2013 Submitted in the Senate, considered, and agreed to without amendment and with a preamble by Unanimous Consent. (All Actions) Tracker: This bill has the status Agreed to in SenateHere are the steps for Status of Legislation:

Seroprevalence, isolation, and co-infection of multiple Toxoplasma gondii strains in individual bobcats (Lynx rufus) from Mississippi, USA

USDA-ARS?s Scientific Manuscript database

Toxoplasma gondii causes lifelong chronic infection in both feline definitive hosts and intermediate hosts. Multiple exposures of the parasite are likely to occur in nature because of high environmental contamination. Here, we present data of high seroprevalence and multiple T. gondii strain co-infe...

AC propulsion system for an electric vehicle, phase 2

NASA Astrophysics Data System (ADS)

Slicker, J. M.

1983-06-01

A second-generation prototype ac propulsion system for a passenger electric vehicle was designed, fabricated, tested, installed in a modified Mercury Lynx vehicle and track tested at the Contractor's site. The system consisted of a Phase 2, 18.7 kw rated ac induction traction motor, a 192-volt, battery powered, pulse-width-modulated, transistorized inverter packaged for under rear seat installation, a 2-axis, 2-speed, automatically-shifted mechanical transaxle and a microprocessor-based powertrain/vehicle controller. A diagnostics computer to assist tuning and fault finding was fabricated. Dc-to-mechanical-system efficiency varied from 78% to 82% as axle speed/torque ranged from 159 rpm/788 nm to 65 rpm/328 nm. Track test efficiency results suggest that the ac system will be equal or superior to dc systems when driving urban cycles. Additional short-term work is being performed under a third contract phase (AC-3) to raise transaxle efficiency to predicted levels, and to improve starting and shifting characteristics. However, the long-term challenge to the system's viability remains inverter cost. A final report on the Phase 2 system, describing Phase 3 modifications, will be issued at the conclusion of AC-3.

West Foster Creek Expansion Project 2007 HEP Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ashley, Paul R.

During April and May 2007, the Columbia Basin Fish and Wildlife Authority's (CBFWA) Regional HEP Team (RHT) conducted baseline Habitat Evaluation Procedures (HEP) (USFWS 1980, 1980a) analyses on five parcels collectively designated the West Foster Creek Expansion Project (3,756.48 acres). The purpose of the HEP analyses was to document extant habitat conditions and to determine how many baseline/protection habitat units (HUs) to credit Bonneville Power Administration (BPA) for funding maintenance and enhancement activities on project lands as partial mitigation for habitat losses associated with construction of Grand Coulee and Chief Joseph Dams. HEP evaluation models included mule deer (Odocoileus hemionus),more » western meadowlark (Sturnella neglecta), sharp-tailed grouse, (Tympanuchus phasianellus), Bobcat (Lynx rufus), mink (Neovison vison), mallard (Anas platyrhynchos), and black-capped chickadee (Parus atricapillus). Combined 2007 baseline HEP results show that 4,946.44 habitat units were generated on 3,756.48 acres (1.32 HUs per acre). HEP results/habitat conditions were generally similar for like cover types at all sites. Unlike crediting of habitat units (HUs) on other WDFW owned lands, Bonneville Power Administration received full credit for HUs generated on these sites.« less

Inferring the Ecological Niche of Toxoplasma gondii and Bartonella spp. in Wild Felids.

PubMed

Escobar, Luis E; Carver, Scott; Romero-Alvarez, Daniel; VandeWoude, Sue; Crooks, Kevin R; Lappin, Michael R; Craft, Meggan E

2017-01-01

Traditional epidemiological studies of disease in animal populations often focus on directly transmitted pathogens. One reason pathogens with complex lifecycles are understudied could be due to challenges associated with detection in vectors and the environment. Ecological niche modeling (ENM) is a methodological approach that overcomes some of the detection challenges often seen with vector or environmentally dependent pathogens. We test this approach using a unique dataset of two pathogens in wild felids across North America: Toxoplasma gondii and Bartonella spp. in bobcats ( Lynx rufus ) and puma ( Puma concolor ). We found three main patterns. First, T. gondii showed a broader use of environmental conditions than did Bartonella spp. Also, ecological niche models, and Normalized Difference Vegetation Index satellite imagery, were useful even when applied to wide-ranging hosts. Finally, ENM results from one region could be applied to other regions, thus transferring information across different landscapes. With this research, we detail the uncertainty of epidemiological risk models across novel environments, thereby advancing tools available for epidemiological decision-making. We propose that ENM could be a valuable tool for enabling understanding of transmission risk, contributing to more focused prevention and control options for infectious diseases.

AC propulsion system for an electric vehicle, phase 2

NASA Technical Reports Server (NTRS)

Slicker, J. M.

1983-01-01

A second-generation prototype ac propulsion system for a passenger electric vehicle was designed, fabricated, tested, installed in a modified Mercury Lynx vehicle and track tested at the Contractor's site. The system consisted of a Phase 2, 18.7 kw rated ac induction traction motor, a 192-volt, battery powered, pulse-width-modulated, transistorized inverter packaged for under rear seat installation, a 2-axis, 2-speed, automatically-shifted mechanical transaxle and a microprocessor-based powertrain/vehicle controller. A diagnostics computer to assist tuning and fault finding was fabricated. Dc-to-mechanical-system efficiency varied from 78% to 82% as axle speed/torque ranged from 159 rpm/788 nm to 65 rpm/328 nm. Track test efficiency results suggest that the ac system will be equal or superior to dc systems when driving urban cycles. Additional short-term work is being performed under a third contract phase (AC-3) to raise transaxle efficiency to predicted levels, and to improve starting and shifting characteristics. However, the long-term challenge to the system's viability remains inverter cost. A final report on the Phase 2 system, describing Phase 3 modifications, will be issued at the conclusion of AC-3.

Virological Survey in free-ranging wildcats (Felis silvestris) and feral domestic cats in Portugal.

PubMed

Duarte, A; Fernandes, M; Santos, N; Tavares, L

2012-08-17

To determine the presence of viral pathogens in natural areas a survey was conducted on an opportunistic sample of fifty eight wild (Felis silvestris silvestris) and feral cats (F. s. catus). The biological materials included serum, lung tissue extract and stool. Feline leukemia virus p27 antigen was detected in 13/50 serum/lung tissue extract samples (26%), canine distemper virus antibodies were detected in 2/26 serum/lung tissue extract samples (7.7%), feline coronavirus RNA was present in 6/29 stool samples (20.7%) and feline parvovirus DNA in 2/29 stool samples (6.9%). Canine distemper virus RNA was not detected. Feline immunodeficiency virus and feline coronavirus antibodies were not detected. Evidence of exposure to feline leukemia virus, canine distemper virus, feline coronavirus and feline parvovirus was found in wild and feral cats raising the importance of performing a comprehensive survey to correctly evaluate the potential threat of infectious diseases to endangered species, namely to the wildcat and to the Iberian lynx, which is meant to be reintroduced after 2012 in Portugal. Copyright © 2012 Elsevier B.V. All rights reserved.

Novel Compound Heterozygous Spatacsin Mutations in a Greek Kindred with Hereditary Spastic Paraplegia SPG11 and Dementia.

PubMed

Fraidakis, Matthew J; Brunetti, Maura; Blackstone, Craig; Filippi, Massimo; Chiò, Adriano

2016-01-01

SPG11 belongs to the autosomal recessive hereditary spastic paraplegias (HSP) and presents during childhood or puberty with a complex clinical phenotype encompassing learning difficulties, ataxia, peripheral neuropathy, amyotrophy, and mental retardation. We hereby present the case of a 30-year-old female patient with complex autosomal recessive HSP with thinning of the corpus callosum (TCC) and dementia that was compound heterozygous with two novel mutations in the SPG11 gene. Sequence analysis of the SPG11 gene revealed two novel mutations in a compound heterozygous state in the index patient (c.2431C>T/p.Gln811Ter and c.6755_6756insT/p.Glu2252Aspfs*88). MRI showed abnormal TCC, white matter (WM) hyperintensities periventricularly, and the 'ears of the lynx' sign. Diffusion tensor imaging showed a mild-to-moderate decrease in fractional anisotropy and an increase in mean diffusivity in WM compared to age-matched controls, while magnetic resonance spectroscopy showed abnormal findings in affected WM with a decrease in N-acetyl-aspartate in WM regions of interest. This is the first SPG11 kindred from the Greek population to be reported in the medical literature. © 2016 S. Karger AG, Basel.

Infusing considerations of trophic dependencies into species distribution modelling.

PubMed

Trainor, Anne M; Schmitz, Oswald J

2014-12-01

Community ecology involves studying the interdependence of species with each other and their environment to predict their geographical distribution and abundance. Modern species distribution analyses characterise species-environment dependency well, but offer only crude approximations of species interdependency. Typically, the dependency between focal species and other species is characterised using other species' point occurrences as spatial covariates to constrain the focal species' predicted range. This implicitly assumes that the strength of interdependency is homogeneous across space, which is not generally supported by analyses of species interactions. This discrepancy has an important bearing on the accuracy of inferences about habitat suitability for species. We introduce a framework that integrates principles from consumer-resource analyses, resource selection theory and species distribution modelling to enhance quantitative prediction of species geographical distributions. We show how to apply the framework using a case study of lynx and snowshoe hare interactions with each other and their environment. The analysis shows how the framework offers a spatially refined understanding of species distribution that is sensitive to nuances in biophysical attributes of the environment that determine the location and strength of species interactions. © 2014 John Wiley & Sons Ltd/CNRS.

Postmortem evaluation of reintroduced migratory whooping cranes in eastern North America.

PubMed

Cole, Gretchen A; Thomas, Nancy J; Spalding, Marilyn; Stroud, Richard; Urbanek, Richard P; Hartup, Barry K

2009-01-01

Reintroduction of endangered Whooping Cranes (Grus americana) in eastern North America has successfully established a migratory population between Wisconsin and Florida. Eighty birds (47 males, 33 females) were released between 2001 and 2006, and all birds were tracked following release with satellite and/or VHF monitoring devices. By the end of 2006, 17 deaths (12 males, five females) were recorded from this population. Postmortem findings and field data were evaluated for each bird to determine the cause of death. Causes included predation (n=8, 47%), trauma (n=2, 12%), and degenerative disease (n=1, 6%); the cause of death was undetermined for 35% (n=6) of the birds. Based on physical evidence, the primary predator of the birds was the bobcat (Lynx rufus). Limited roosting habitat availability or bird behavior were likely prime factors in the occurrence of predation. Traumatic injuries and mortality were caused by gunshot, electrical utility lines, and an unknown source. The lone case of degenerative disease was due to chronic exertional myopathy associated with translocation. Available postmortem testing did not indicate the presence of infectious disease in this limited sample.

The equipment access software for a distributed UNIX-based accelerator control system

NASA Astrophysics Data System (ADS)

Trofimov, Nikolai; Zelepoukine, Serguei; Zharkov, Eugeny; Charrue, Pierre; Gareyte, Claire; Poirier, Hervé

1994-12-01

This paper presents a generic equipment access software package for a distributed control system using computers with UNIX or UNIX-like operating systems. The package consists of three main components, an application Equipment Access Library, Message Handler and Equipment Data Base. An application task, which may run in any computer in the network, sends requests to access equipment through Equipment Library calls. The basic request is in the form Equipment-Action-Data and is routed via a remote procedure call to the computer to which the given equipment is connected. In this computer the request is received by the Message Handler. According to the type of the equipment connection, the Message Handler either passes the request to the specific process software in the same computer or forwards it to a lower level network of equipment controllers using MIL1553B, GPIB, RS232 or BITBUS communication. The answer is then returned to the calling application. Descriptive information required for request routing and processing is stored in the real-time Equipment Data Base. The package has been written to be portable and is currently available on DEC Ultrix, LynxOS, HPUX, XENIX, OS-9 and Apollo domain.

Traffic sign detection in MLS acquired point clouds for geometric and image-based semantic inventory

NASA Astrophysics Data System (ADS)

Soilán, Mario; Riveiro, Belén; Martínez-Sánchez, Joaquín; Arias, Pedro

2016-04-01

Nowadays, mobile laser scanning has become a valid technology for infrastructure inspection. This technology permits collecting accurate 3D point clouds of urban and road environments and the geometric and semantic analysis of data became an active research topic in the last years. This paper focuses on the detection of vertical traffic signs in 3D point clouds acquired by a LYNX Mobile Mapper system, comprised of laser scanning and RGB cameras. Each traffic sign is automatically detected in the LiDAR point cloud, and its main geometric parameters can be automatically extracted, therefore aiding the inventory process. Furthermore, the 3D position of traffic signs are reprojected on the 2D images, which are spatially and temporally synced with the point cloud. Image analysis allows for recognizing the traffic sign semantics using machine learning approaches. The presented method was tested in road and urban scenarios in Galicia (Spain). The recall results for traffic sign detection are close to 98%, and existing false positives can be easily filtered after point cloud projection. Finally, the lack of a large, publicly available Spanish traffic sign database is pointed out.

Toward Large FOV High-Resolution X-Ray Imaging Spectrometer: Microwave Multiplexed Readout of 32 TES Microcalorimeters

NASA Technical Reports Server (NTRS)

Yoon, Wonsik; Adams, Joseph S.; Bandler, Simon R.; Chervenak, James A.; Datesman, Aaron M.; Eckart, Megan E.; Finkbeiner, Fred M.; Kelley, Richard L.; Kilbourne, Caroline A.; Miniussi, Antoine R.;

[WILD MAMMALS OF THE GRAND DUCHY OF LITHUANIA IN THE WORKS OF JEAN-EMMANUEL GILIBERT].

PubMed

Samojlik, Tomasz; Daszkiewicz, Piotr

2015-01-01

Among the many topics of lively scientific work that Jean Emmanuel Gilibert (1741-1814) conducted in Grodno and Vilnius, an important place is occupied by his observations of wild mammals. Royal patronage and care from Antoni Tyzenhauz, Treasurer of the Grand Duchy of Lithuania and the governor of Grodno, allowed Gilibert to keep and observe wild fauna captured by royal services in royal forests, including Białowieża Primeval Forest. Such was an origin of a female bison kept by Gilibert in Grodno. Its description, published in Indagatores naturae in Lithuania (Vilnius 1781) for decades became the primary source of information about the behaviour, food preferences and the anatomy of European bison. European science has just begun to take interest in European bison, therefore Gilibert's account entered scientific circulation by way of French natural history encyclopaedias (mainly Georges Buffon's Histoire naturelle) and works by Georges Cuvier or Étienne Geoffroy Saint-Hilaire. Apart from the description of European bison, Gilibert left an entire series of observations of wild mammals inhabiting the forests of the Grand Duchy of Lithuania. His accounts of moose were important in building a knowledge base for this species. In the first half of the 18th century, moose was known mainly from fantastic descriptions in Renaissance works and from prescriptions devoted to using moose hoof as the epilepsy treatment. Gilibert's observations helped to overthrow such superstitions. Similarly, Gilibert's first-hand information verified the widespread legends concerning brown bear (e.g. the belief that white bears, belonging to other species than polar bears, occur in Lithuania) . List of species kept and thoroughly watched by the scholar is much longer and includes lynx, wolf (and hybrids of wolves and dogs), beaver, badger, fox, hedgehog, and even white mouse. Also his comments on the species of mammals then absent in Lithuania but known either from farming or from the fur

Secreted Isoform of Human Lynx1 (SLURP-2): Spatial Structure and Pharmacology of Interactions with Different Types of Acetylcholine Receptors

NASA Astrophysics Data System (ADS)

Lyukmanova, E. N.; Shulepko, M. A.; Shenkarev, Z. O.; Bychkov, M. L.; Paramonov, A. S.; Chugunov, A. O.; Kulbatskii, D. S.; Arvaniti, M.; Dolejsi, Eva; Schaer, T.; Arseniev, A. S.; Efremov, R. G.; Thomsen, M. S.; Dolezal, V.; Bertrand, D.; Dolgikh, D. A.; Kirpichnikov, M. P.

2016-08-01

Human-secreted Ly-6/uPAR-related protein-2 (SLURP-2) regulates the growth and differentiation of epithelial cells. Previously, the auto/paracrine activity of SLURP-2 was considered to be mediated via its interaction with the α3β2 subtype of the nicotinic acetylcholine receptors (nAChRs). Here, we describe the structure and pharmacology of a recombinant analogue of SLURP-2. Nuclear magnetic resonance spectroscopy revealed a ‘three-finger’ fold of SLURP-2 with a conserved β-structural core and three protruding loops. Affinity purification using cortical extracts revealed that SLURP-2 could interact with the α3, α4, α5, α7, β2, and β4 nAChR subunits, revealing its broader pharmacological profile. SLURP-2 inhibits acetylcholine-evoked currents at α4β2 and α3β2-nAChRs (IC50 ~0.17 and >3 μM, respectively) expressed in Xenopus oocytes. In contrast, at α7-nAChRs, SLURP-2 significantly enhances acetylcholine-evoked currents at concentrations <1 μM but induces inhibition at higher concentrations. SLURP-2 allosterically interacts with human M1 and M3 muscarinic acetylcholine receptors (mAChRs) that are overexpressed in CHO cells. SLURP-2 was found to promote the proliferation of human oral keratinocytes via interactions with α3β2-nAChRs, while it inhibited cell growth via α7-nAChRs. SLURP-2/mAChRs interactions are also probably involved in the control of keratinocyte growth. Computer modeling revealed possible SLURP-2 binding to the ‘classical’ orthosteric agonist/antagonist binding sites at α7 and α3β2-nAChRs.

Comparing scat detection dogs, cameras, and hair snares for surveying carnivores

USGS Publications Warehouse

Long, Robert A.; Donovan, T.M.; MacKay, Paula; Zielinski, William J.; Buzas, Jeffrey S.

2007-01-01

Carnivores typically require large areas of habitat, exist at low natural densities, and exhibit elusive behavior - characteristics that render them difficult to study. Noninvasive survey methods increasingly provide means to collect extensive data on carnivore occupancy, distribution, and abundance. During the summers of 2003-2004, we compared the abilities of scat detection dogs, remote cameras, and hair snares to detect black bears (Ursus americanus), fishers (Martes pennanti), and bobcats (Lynx rufus) at 168 sites throughout Vermont. All 3 methods detected black bears; neither fishers nor bobcats were detected by hair snares. Scat detection dogs yielded the highest raw detection rate and probability of detection (given presence) for each of the target species, as well as the greatest number of unique detections (i.e., occasions when only one method detected the target species). We estimated that the mean probability of detecting the target species during a single visit to a site with a detection dog was 0.87 for black bears, 0.84 for fishers, and 0.27 for bobcats. Although the cost of surveying with detection dogs was higher than that of remote cameras or hair snares, the efficiency of this method rendered it the most cost-effective survey method.

Advancing the technology of monolithic CMOS detectors for use as x-ray imaging spectrometers

NASA Astrophysics Data System (ADS)

Kenter, Almus; Kraft, Ralph; Gauron, Thomas; Amato, Stephen

2017-08-01

The Smithsonian Astrophysical Observatory (SAO) in collaboration with SRI/Sarnoff has been engaged in a multi year effort to advance the technology of monolithic back-thinned CMOS detectors for use as X-ray imaging spectrometers. The long term goal of this campaign is to produce X-ray Active Pixel Sensor (APS) detectors with Fano limited performance over the 0.1-10keV band while incorporating the many benefits of CMOS technology. These benefits include: low power consumption, radiation "hardness", high levels of integration, and very high read rates. Such devices would be ideal for candidate post 2020 decadal missions such as LYNX and for smaller more immediate applications such as CubeX. Devices from a recent fabrication have been back-thinned, packaged and tested for soft X-ray response. These devices have 16μm pitch, 6 Transistor Pinned Photo Diode (6TPPD) pixels with ˜135μV/electron sensitivity and a highly parallel signal chain. These new detectors are fabricated on 10μm epitaxial silicon and have a 1k by 1k format. We present details of our camera design and device performance with particular emphasis on those aspects of interest to single photon counting X-ray astronomy. These features include read noise, X-ray spectral response and quantum efficiency.

Looking for Dust-Scattering Light Echoes

NASA Astrophysics Data System (ADS)

Mills, Brianna; Heinz, Sebastian; Corrales, Lia

2018-01-01

Galactic X-ray transient sources such as neutron stars or black holes sometimes undergo an outburst in X-rays. Ring structures have been observed around three such sources, produced by the X-ray photons being scattered by interstellar dust grains along our line of sight. These dust-scattering light echoes have proven to be a useful tool for measuring and constraining Galactic distances, mapping the dust structure of the Milky Way, and determining the dust composition in the clouds producing the echo. Detectable light echoes require a sufficient quantity of dust along our line of sight, as well as bright, short-lived Galactic X-ray flares. Using data from the Monitor of All-Sky X-ray Image (MAXI) on-board the International Space Station, we ran a peak finding algorithm in Python to look for characteristic flare events. Each flare was characterized by its fluence, the integrated flux of the flare over time. We measured the distribution of flare fluences to show how many observably bright flares were recorded by MAXI. This work provides a parent set for dust echo searches in archival X-ray data and will inform observing strategies with current and future X-ray missions such as Athena and Lynx.

Isolation of Bartonella henselae, Bartonella koehlerae subsp. koehlerae, Bartonella koehlerae subsp. bothieri and a new subspecies of B. koehlerae from free-ranging lions (Panthera leo) from South Africa, cheetahs (Acinonyx jubatus) from Namibia and captive cheetahs from California.

PubMed

Molia, S; Kasten, R W; Stuckey, M J; Boulouis, H J; Allen, J; Borgo, G M; Koehler, J E; Chang, C C; Chomel, B B

2016-11-01

Bartonellae are blood- and vector-borne Gram-negative bacteria, recognized as emerging pathogens. Whole-blood samples were collected from 58 free-ranging lions (Panthera leo) in South Africa and 17 cheetahs (Acinonyx jubatus) from Namibia. Blood samples were also collected from 11 cheetahs (more than once for some of them) at the San Diego Wildlife Safari Park. Bacteria were isolated from the blood of three (5%) lions, one (6%) Namibian cheetah and eight (73%) cheetahs from California. The lion Bartonella isolates were identified as B. henselae (two isolates) and B. koehlerae subsp. koehlerae. The Namibian cheetah strain was close but distinct from isolates from North American wild felids and clustered between B. henselae and B. koehlerae. It should be considered as a new subspecies of B. koehlerae. All the Californian semi-captive cheetah isolates were different from B. henselae or B. koehlerae subsp. koehlerae and from the Namibian cheetah isolate. They were also distinct from the strains isolated from Californian mountain lions (Felis concolor) and clustered with strains of B. koehlerae subsp. bothieri isolated from free-ranging bobcats (Lynx rufus) in California. Therefore, it is likely that these captive cheetahs became infected by an indigenous strain for which bobcats are the natural reservoir.

Scat removal: A source of bias in feces-related studies

USGS Publications Warehouse

Livingston, T.R.; Gipson, P.S.; Ballard, W.B.; Sanchez, D.M.; Krausman, P.R.

2005-01-01

Consumption of feces (coprophagy) may alter findings of dietary studies and population estimates based on fecal analyses, but its magnitude is poorly understood. We investigated seasonal incidence of scat removal on Fort Riley, Kansas, from January through December 2000. We placed feces from captive bobcats (Lynx rufus), captive coyotes (Canis latrans), and free-ranging coyotes randomly on tracking stations in forest and prairie landscapes to determine rates of scat removal by local wildlife. Rates of removal of feces from captive bobcats, captive coyotes, and free-ranging coyotes varied from 7% during spring to 50% during summer. We identified opossums (Didelphis virginiana) as the most common species present at stations where scat removal occurred. Feces may be an important seasonal source of food for opossums and may provide seasonal dietary supplements for other species. Other factors responsible for disturbance of feces included a woodrat (Neotoma floridana) caching coyote feces, removal of captive coyote feces by free-ranging coyotes accompanied by deposition of fresh feces, a bobcat burying a captive bobcat sample and depositing fresh feces, and rain storms. Dietary studies based on fecal analyses could be biased by scat removal, assuming that contents in feces are representative of the proportion of foods consumed.

Can orchards help connect Mediterranean ecosystems? Animal movement data alter conservation priorities

USGS Publications Warehouse

Nogeire, Theresa M.; Davis, Frank W.; Crooks, Kevin R.; McRae, Brad H.; Lyren, Lisa M.; Boydston, Erin E.

2015-01-01

As natural habitats become fragmented by human activities, animals must increasingly move through human-dominated systems, particularly agricultural landscapes. Mapping areas important for animal movement has therefore become a key part of conservation planning. Models of landscape connectivity are often parameterized using expert opinion and seldom distinguish between the risks and barriers presented by different crop types. Recent research, however, suggests different crop types, such as row crops and orchards, differ in the degree to which they facilitate or impede species movements. Like many mammalian carnivores, bobcats (Lynx rufus) are sensitive to fragmentation and loss of connectivity between habitat patches. We investigated how distinguishing between different agricultural land covers might change conclusions about the relative conservation importance of different land uses in a Mediterranean ecosystem. Bobcats moved relatively quickly in row crops but relatively slowly in orchards, at rates similar to those in natural habitats of woodlands and scrub. We found that parameterizing a connectivity model using empirical data on bobcat movements in agricultural lands and other land covers, instead of parameterizing the model using habitat suitability indices based on expert opinion, altered locations of predicted animal movement routes. These results emphasize that differentiating between types of agriculture can alter conservation planning outcomes.

Data gathering and simulation of climate change impacts in mountainous areas

NASA Astrophysics Data System (ADS)

Bachelet, D.; Baker, B.; Hicke, J.; Conklin, D.; McKelvey, K.

2007-12-01

High mountains include species most at risk in a warming environment and are a critical link in the water supply chain for both human and natural systems. Scientists are monitoring and simulating these systems as snowpack depth changes, snowmelt timing changes, frozen soils melt and destabilize, and low elevation populations migrate upslope. Natural climate cycles and human activities interact with climate change trends and complicate the interpretation of the signal we observe. For ex. over the past 4 years in Yunnan (China), we documented that herbaceous alpine meadows are contracting as forest tree line advances and alpine shrub biomass increases. This is a result of interactions between human land use alteration and observed shifts in climate. In North America as snowpack decreases, wolverines and lynx denning conditions are jeopardized as human pressure reduces their extent. Coarse scale vegetation shift models using downscaled future climate scenarios fail to capture complex terrain features and microclimatic conditions that can either ensure critical habitat for the in-situ survival of threatened species or make things worse (ex. rockfalls) for climate migrants. Recent simulation efforts focus on high resolution models that address aspect, slope, soil types, and microclimate variations that affect local and migrating plants, their associated pollinators and insect herbivores, modifying habitat availability for birds and mammals

An integrative computational approach for prioritization of genomic variants

DOE PAGES

Dubchak, Inna; Balasubramanian, Sandhya; Wang, Sheng; ...

2014-12-15

An essential step in the discovery of molecular mechanisms contributing to disease phenotypes and efficient experimental planning is the development of weighted hypotheses that estimate the functional effects of sequence variants discovered by high-throughput genomics. With the increasing specialization of the bioinformatics resources, creating analytical workflows that seamlessly integrate data and bioinformatics tools developed by multiple groups becomes inevitable. Here we present a case study of a use of the distributed analytical environment integrating four complementary specialized resources, namely the Lynx platform, VISTA RViewer, the Developmental Brain Disorders Database (DBDB), and the RaptorX server, for the identification of high-confidence candidatemore » genes contributing to pathogenesis of spina bifida. The analysis resulted in prediction and validation of deleterious mutations in the SLC19A placental transporter in mothers of the affected children that causes narrowing of the outlet channel and therefore leads to the reduced folate permeation rate. The described approach also enabled correct identification of several genes, previously shown to contribute to pathogenesis of spina bifida, and suggestion of additional genes for experimental validations. This study demonstrates that the seamless integration of bioinformatics resources enables fast and efficient prioritization and characterization of genomic factors and molecular networks contributing to the phenotypes of interest.« less

Individual movement behavior, matrix heterogeneity, and the dynamics of spatially structured populations.

PubMed

Revilla, Eloy; Wiegand, Thorsten

2008-12-09

The dynamics of spatially structured populations is characterized by within- and between-patch processes. The available theory describes the latter with simple distance-dependent functions that depend on landscape properties such as interpatch distance or patch size. Despite its potential role, we lack a good mechanistic understanding of how the movement of individuals between patches affects the dynamics of these populations. We used the theoretical framework provided by movement ecology to make a direct representation of the processes determining how individuals connect local populations in a spatially structured population of Iberian lynx. Interpatch processes depended on the heterogeneity of the matrix where patches are embedded and the parameters defining individual movement behavior. They were also very sensitive to the dynamic demographic variables limiting the time moving, the within-patch dynamics of available settlement sites (both spatiotemporally heterogeneous) and the response of individuals to the perceived risk while moving. These context-dependent dynamic factors are an inherent part of the movement process, producing connectivities and dispersal kernels whose variability is affected by other demographic processes. Mechanistic representations of interpatch movements, such as the one provided by the movement-ecology framework, permit the dynamic interaction of birth-death processes and individual movement behavior, thus improving our understanding of stochastic spatially structured populations.

Characterization of the multiple components of Acanthopanax Senticosus stem by ultra high performance liquid chromatography with quadrupole time-of-flight tandem mass spectrometry.

PubMed

Sun, Hui; Liu, Jianhua; Zhang, Aihua; Zhang, Ying; Meng, Xiangcai; Han, Ying; Zhang, Yingzhi; Wang, Xijun

2016-02-01

Acanthopanax Senticosus Harms. has been used widely in traditional Chinese medicine for the treatment of chronic bronchitis, neurasthenia, hypertension and ischemic heart disease. However, the in vivo constituents of the stem of Acanthopanax Senticosus remain unknown. In this paper, ultra high performance liquid chromatography with electrospray ionization quadrupole time-of-flight mass spectrometry and the MarkerLynx(TM) software combined with multiple data processing approach were used to study the constituents in vitro and in vivo. The aqueous extract from the Acanthopanax Senticosus stem and the compositions in rat serum after intragastric administration were completely analyzed. Consequently, 115 compounds in the aqueous extract from Acanthopanax Senticosus stem and 41 compounds absorbed into blood were characterized. Of the 115 compounds in vitro, 54 were reported for first time, including sinapyl alcohol, sinapyl alcohol diglucoside, and 1-O-sinapoyl-β-D-glucose. In the 41 compounds in vivo, 7 were prototype components and 34 were metabolites which were from 21 components of aqueous extract from Acanthopanax Senticosus stem, and the metabolic pathways of the metabolites were elucidated for first time. The results narrowed the range of screening the active components and provided a basis for the study of action mechanism and pharmacology. © 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Seroprevalence of Toxoplasma gondii infection in captive mammals in three zoos in Mexico City, Mexico.

PubMed

Alvarado-Esquivel, Cosme; Gayosso-Dominguez, Edgar Arturo; Villena, Isabelle; Dubey, J P

2013-09-01

Antibodies to Toxoplasma gondii were determined in 167 mammals in three zoos in Mexico City, Mexico, using the modified agglutination test (MAT). Overall, antibodies to T. gondii were found in 89 (53.3%) of the 167 animals tested. Antibodies were found in 35 of 43 wild Felidae: 2 of 2 bobcats (Lynx rufus); 4 of 4 cougars (Puma concolor); 10 of 13 jaguars (Panthera onca); 5 of 5 leopards (Panthera pardus); 7 of 7 lions (Panthera leo); 2 of 3 tigers (Panthera tigris); 2 of 3 ocelots (Leopardus pardalis); 2 of 2 Sumatran tigers (Panthera tigris sumatrae); lof 2 Jaguarundi (Herpailurus jagouaroundi); but not in 0 of 2 oncillas (Leopardus tigrinus). Such high seroprevalence in wild felids is of public health significance because of the potential of oocyst shedding. Four of 6 New World primates (2 of 2 Geoffroy's spider monkeys [Ateles geoffroyi], 1 of 3 Patas monkeys [Erythrocebus patas], and 1 of 1 white-headed capuchin [Cebus capucinus]) had high MAT titers of 3,200, suggesting recently acquired infection; these animals are highly susceptible to clinical toxoplasmosis. However, none of these animals were ill. Seropositivity to T. gondii was found for the first time in a number of species.

Disdrometer and Tipping Bucket Rain Gauge Handbook

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bartholomew. MJ

2009-12-01

The Distromet disdrometer model RD-80 and NovaLynx tipping bucket rain gauge model 260-2500E-12 are two devices deployed a few meters apart to measure the character and amount of liquid precipitation. The main purpose of the disdrometer is to measure drop size distribution, which it does over 20 size classes from 0.3 mm to 5.4 mm. The data from both instruments can be used to determine rain rate. The disdrometer results can also be used to infer several properties including drop number density, radar reflectivity, liquid water content, and energy flux. Two coefficients, N0 and Λ, from an exponential fit betweenmore » drop diameter and drop number density, are routinely calculated. Data are collected once a minute. The instruments make completely different kinds of measurements. Rain that falls on the disdrometer sensor moves a plunger on a vertical axis. The disdrometer transforms the plunger motion into electrical impulses whose strength is proportional to drop diameter. The rain gauge is the conventional tipping bucket type. Each tip collects an amount equivalent to 0.01 in. of water, and each tip is counted by a data acquisition system anchored by a Campbell CR1000 data logger.« less

Intelligent switches of integrated lightwave circuits with core telecommunication functions

NASA Astrophysics Data System (ADS)

Izhaky, Nahum; Duer, Reuven; Berns, Neil; Tal, Eran; Vinikman, Shirly; Schoenwald, Jeffrey S.; Shani, Yosi

2001-05-01

We present a brief overview of a promising switching technology based on Silica on Silicon thermo-optic integrated circuits. This is basically a 2D solid-state optical device capable of non-blocking switching operation. Except of its excellent performance (insertion loss<5dB, switching time<2ms...), the switch enables additional important build-in functionalities. It enables single-to- single channel switching and single-to-multiple channel multicasting/broadcasting. In addition, it has the capability of channel weighting and variable output power control (attenuation), for instance, to equalize signal levels and compensate for unbalanced different optical input powers, or to equalize unbalanced EDFA gain curve. We examine the market segments appropriate for the switch size and technology, followed by a discussion of the basic features of the technology. The discussion is focused on important requirements from the switch and the technology (e.g., insertion loss, power consumption, channel isolation, extinction ratio, switching time, and heat dissipation). The mechanical design is also considered. It must take into account integration of optical fiber, optical planar wafer, analog electronics and digital microprocessor controls, embedded software, and heating power dissipation. The Lynx Photon.8x8 switch is compared to competing technologies, in terms of typical market performance requirements.

Oxygen isotope composition of North American bobcat (Lynx rufus) and puma (Puma concolor) bone phosphate: implications for provenance and climate reconstruction.

PubMed

Pietsch, Stephanie J; Tütken, Thomas

2016-01-01

Feline carnivores are threatened by illegal wildlife trade. Tracing the provenance of unknown felid tissues via stable isotope analysis could provide important information in wildlife crime investigations. The oxygen isotope composition of mammalian skeletal phosphate (δ(18)Op) is widely applied to trace the origin of animal remains and to reconstruct migratory patterns in palaeontological, archaeological, ecological and wildlife forensic applications. Teeth and bones of terrestrial mammals form at constant body temperature in isotope equilibrium with body water, which is predominantly controlled by ingested meteoric water (δ(18)Ow) that varies systematically with latitude, altitude and climate. Here we analysed δ(18)Op of 106 North American puma and bobcat bones of known geographic origin to establish the first δ(18)Op-δ(18)Ow regression for feline carnivores: δ(18)Op = 0.40(±0.04) * δ(18)Ow + 20.10(±0.40) (R(2) = 0.46, n = 106). This was compared with those from their respective prey species (deer and rabbit), a canid carnivore (fox) and other placental mammals. Effects of species, sex and relative humidity on the feline δ(18)Op-δ(18)Ow correlation were analysed and additional intra-individual tissue comparisons (hair δ(18)Oh vs. bone δ(18)Op) were performed for some bobcat individuals. Bobcats and pumas exhibited only a moderate δ(18)Op-δ(18)Ow correlation, which differed from canid carnivores and other placental mammals. However, feline δ(18)Op values revealed a moderate relation with δ(18)Ow, which lacks for the δ(18)Oh of hair from the same bobcat individuals. This indicates a difference in oxygen isotope routing from body water to bioapatite and hair. Most herbivores and omnivores track δ(18)Ow in their bioapatite δ(18)Op values much better, whereas δ(18)Op and especially δ(18)Oh values of feline carnivores are less precise proxies for meteoric water δ(18)Ow values and thus for provenance determination in wildlife forensics and palaeoclimate reconstructions. Oxygen isotope fingerprinting of bobcat and puma is biased by factors related to their diet, behaviour and metabolism that need to be better understood.

Antibody detection and molecular characterization of Toxoplasma gondii from bobcats (Lynx rufus),domestic cats (Felis catus),and wildlife from Minnesota, USA

USDA-ARS?s Scientific Manuscript database

Toxoplasma gondii and Sarcocystis felis are protozoan parasites that infect both, domestic and wild felids. Bobcats are the definitive host in the life cycle of T. gondii. Limited information’s are available concerning T. gondii infection in different populations of bobcats. In the paper, the preval...

Occurrence and molecular genotyping of Giardia duodenalis and Cryptosporidium spp. in wild mesocarnivores in Spain.

PubMed

Mateo, Marta; de Mingo, Marta Hernández; de Lucio, Aida; Morales, Lucía; Balseiro, Ana; Espí, Alberto; Barral, Marta; Lima Barbero, José Francisco; Habela, Miguel Ángel; Fernández-García, José L; Bernal, Rafael Calero; Köster, Pamela C; Cardona, Guillermo A; Carmena, David

2017-02-15

There is a surprisingly scarce amount of epidemiological and molecular data on the prevalence, frequency, and diversity of the intestinal protozoan parasites Giardia duodenalis and Cryptosporidium spp. in wildlife in general and mesocarnivore species in particular. Consequently, the extent of the cyst/oocyst environmental contamination attributable to these wild host species and their potential implications for public veterinary health remain largely unknown. In this molecular epidemiological survey a total of 193 individual faecal samples from badgers (Meles meles, n=70), ferrets (Mustela putorius furo, n=2), genets (Genetta genetta, n=6), Iberian lynxes (Lynx pardinus, n=6), beech martens (Martes foina, n=8), mongooses (Herpestes ichneumon, n=2), otters (Lutra lutra, n=2), polecats (Mustela putorius, n=2), red foxes (Vulpes vulpes, n=87), wildcats (Felis silvestris, n=2), and wolves (Canis lupus, n=6) were obtained from road-killed, hunted, and accidentally found carcasses, and from camera-trap surveys or animals entering rescue shelters, during the period December 2003-April 2016. Investigated specimens were collected in five Spanish autonomous regions including Andalusia (n=1), Asturias (n=69), Basque Country (n=49), Castile-La Mancha (n=38), and Extremadura (n=36). The presence of cysts/oocysts was confirmed by PCR-based methods targeting the small subunit (ssu) ribosomal RNA gene of these parasite species. Genotyping of the obtained isolates were attempted at appropriate markers including the glutamate dehydrogenase (G. duodenalis) and the 60-kDa glycoprotein (C. parvum and C. ubiquitum) loci. Overall, G. duodenalis was detected in 8% (7/87) of red foxes, a single beech marten, and a single wolf, respectively. Cryptosporidium was identified in 3% (2/70) of badgers, 8% (7/87) of red foxes, a single genet, and a single mongoose, respectively. None of the nine G. duodenalis isolates generated could be genotyped at the assemblage/sub-assemblage level. Out of the

SPring-8 beamline control system.

PubMed

Ohata, T; Konishi, H; Kimura, H; Furukawa, Y; Tamasaku, K; Nakatani, T; Tanabe, T; Matsumoto, N; Ishii, M; Ishikawa, T

1998-05-01

The SPring-8 beamline control system is now taking part in the control of the insertion device (ID), front end, beam transportation channel and all interlock systems of the beamline: it will supply a highly standardized environment of apparatus control for collaborative researchers. In particular, ID operation is very important in a third-generation synchrotron light source facility. It is also very important to consider the security system because the ID is part of the storage ring and is therefore governed by the synchrotron ring control system. The progress of computer networking systems and the technology of security control require the development of a highly flexible control system. An interlock system that is independent of the control system has increased the reliability. For the beamline control system the so-called standard model concept has been adopted. VME-bus (VME) is used as the front-end control system and a UNIX workstation as the operator console. CPU boards of the VME-bus are RISC processor-based board computers operated by a LynxOS-based HP-RT real-time operating system. The workstation and the VME are linked to each other by a network, and form the distributed system. The HP 9000/700 series with HP-UX and the HP 9000/743rt series with HP-RT are used. All the controllable apparatus may be operated from any workstation.

Deterministic figure correction of piezoelectrically adjustable slumped glass optics

NASA Astrophysics Data System (ADS)

DeRoo, Casey T.; Allured, Ryan; Cotroneo, Vincenzo; Hertz, Edward; Marquez, Vanessa; Reid, Paul B.; Schwartz, Eric D.; Vikhlinin, Alexey A.; Trolier-McKinstry, Susan; Walker, Julian; Jackson, Thomas N.; Liu, Tianning; Tendulkar, Mohit

2018-01-01

Thin x-ray optics with high angular resolution (≤ 0.5 arcsec) over a wide field of view enable the study of a number of astrophysically important topics and feature prominently in Lynx, a next-generation x-ray observatory concept currently under NASA study. In an effort to address this technology need, piezoelectrically adjustable, thin mirror segments capable of figure correction after mounting and on-orbit are under development. We report on the fabrication and characterization of an adjustable cylindrical slumped glass optic. This optic has realized 100% piezoelectric cell yield and employs lithographically patterned traces and anisotropic conductive film connections to address the piezoelectric cells. In addition, the measured responses of the piezoelectric cells are found to be in good agreement with finite-element analysis models. While the optic as manufactured is outside the range of absolute figure correction, simulated corrections using the measured responses of the piezoelectric cells are found to improve 5 to 10 arcsec mirrors to 1 to 3 arcsec [half-power diameter (HPD), single reflection at 1 keV]. Moreover, a measured relative figure change which would correct the figure of a representative slumped glass piece from 6.7 to 1.2 arcsec HPD is empirically demonstrated. We employ finite-element analysis-modeled influence functions to understand the current frequency limitations of the correction algorithm employed and identify a path toward achieving subarcsecond corrections.

The Advanced X-ray Imaging Satellite (AXIS)

NASA Astrophysics Data System (ADS)

Reynolds, Christopher S.; Mushotzky, Richard

2017-08-01

The Advanced X-ray Imaging Satellite (AXIS) will follow in the footsteps of the spectacularly successful Chandra X-ray Observatory with similar or higher angular resolution and an order of magnitude more collecting area in the 0.3-10keV band. These capabilities will enable major advances in many of the most active areas of astrophysics, including (i) mapping event horizon scale structure in AGN accretion disks and the determination of supermassive black hole (SMBH) spins through monitoring of gravitationally-microlensed quasars; (ii) dramatically deepening our understanding of AGN feedback in galaxies and galaxy clusters out to high-z through the direct imaging of AGN winds and the interaction of jets with the hot interstellar/intracluster medium; (iii) understanding the fueling of AGN by probing hot flows inside of the SMBH sphere of influence; (iv) obtaining geometric distance measurements using dust scattering halos. With a nominal 2028 launch, AXIS will be enormously synergistic with LSST, ALMA, WFIRST and ATHENA, and will be a valuable precursor to Lynx. AXIS is enabled by breakthroughs in the construction of light-weight X-ray optics from mono-crystalline silicon blocks, building on recent developments in the semiconductor industry. Here, we describe the straw-man concept for AXIS, some of the high profile science that this observatory will address, and how you can become involved.

Current test results for the Athena radar responsive tag

NASA Astrophysics Data System (ADS)

Ormesher, Richard C.; Martinez, Ana; Plummer, Kenneth W.; Erlandson, David; Delaware, Sheri; Clark, David R.

2006-05-01

Sandia National Laboratories has teamed with General Atomics and Sierra Monolithics to develop the Athena tag for the Army's Radar Tag Engagement (RaTE) program. The radar-responsive Athena tag can be used for Blue Force tracking and Combat Identification (CID) as well as data collection, identification, and geolocation applications. The Athena tag is small (~4.5" x 2.4" x 4.2"), battery-powered, and has an integral antenna. Once remotely activated by a Synthetic Aperture Radar (SAR) or Moving Target Indicator (MTI) radar, the tag transponds modulated pulses to the radar at a low transmit power. The Athena tag can operate Ku-band and X-band airborne SAR and MTI radars. This paper presents results from current tag development testing activities. Topics covered include recent field tests results from the AN/APY-8 Lynx, F16/APG-66, and F15E/APG-63 V(1) radars and other Fire Control radars. Results show that the Athena tag successfully works with multiple radar platforms, in multiple radar modes, and for multiple applications. Radar-responsive tags such as Athena have numerous applications in military and government arenas. Military applications include battlefield situational awareness, combat identification, targeting, personnel recovery, and unattended ground sensors. Government applications exist in nonproliferation, counter-drug, search-and-rescue, and land-mapping activities.

Improved ultra-performance liquid chromatography with electrospray ionization quadrupole-time-of-flight high-definition mass spectrometry method for the rapid analysis of the chemical constituents of a typical medical formula: Liuwei Dihuang Wan.

PubMed

Wang, Ping; Lv, Hai tao; Zhang, Ai hua; Sun, Hui; Yan, Guang li; Han, Ying; Wu, Xiu hong; Wang, Xi jun

2013-11-01

Liuwei Dihuang Wan (LDW), a classic Chinese medicinal formula, has been used to improve or restore declined functions related to aging and geriatric diseases, such as impaired mobility, vision, hearing, cognition, and memory. It has attracted increasing attention as one of the most popular and valuable herbal medicines. However, the systematic analysis of the chemical constituents of LDW is difficult and thus has not been well established. In this paper, a rapid, sensitive, and reliable ultra-performance LC with ESI quadrupole TOF high-definition MS method with automated MetaboLynx analysis in positive and negative ion mode was established to characterize the chemical constituents of LDW. The analysis was performed on a Waters UPLC™ HSS T3 using a gradient elution system. MS/MS fragmentation behavior was proposed for aiding the structural identification of the components. Under the optimized conditions, a total of 50 peaks were tentatively characterized by comparing the retention time and MS data. It is concluded that a rapid and robust platform based on ultra-performance LC with ESI quadrupole TOF high-definition MS has been successfully developed for globally identifying multiple constituents of traditional Chinese medicine prescriptions. This is the first report on the systematic analysis of the chemical constituents of LDW. © 2013 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Evaluation of road expansion and connectivity mitigation for wildlife in southern California

USGS Publications Warehouse

Alonso, Robert S.; Lyren, Lisa M.; Boydston, Erin E.; Haas, Christopher D.; Crooks, Kevin R.

2014-01-01

We designed a remote-camera survey to study how the expansion of California State Route 71 (CA-71) and implementation of connectivity mitigation affected the use of underpasses by large mammals in southern California. Based on detections by cameras, the use of underpasses by bobcats (Lynx rufus) was higher within the area of expansion and mitigation after construction than before, but there was no difference in use of underpasses in the impact zone compared to the control zone before or after construction. Use of underpasses by coyotes (Canis latrans) was higher in the control zone than in the impact zone, but there was no difference in use before and after construction. Small numbers of detections of mule deer (Odocoileus hemionus) at only a few underpasses precluded comparison between control and impact zones. However, a comparison of use before and after construction revealed that use of underpasses by mule deer was slightly higher post-construction. We cannot fully attribute increased detections post-construction to mitigative efforts, because other factors, such as availability of habitat, urbanization, or demography, also may have influenced use of underpasses along CA-71. Nonetheless, even with the expansion of the freeway and subsequent increase in volume of traffic, mitigative structures along CA-71 did allow for continued movement and, hence, connectivity across the roadway for large mammals.

Regularized Semiparametric Estimation for Ordinary Differential Equations

PubMed Central

Li, Yun; Zhu, Ji; Wang, Naisyin

2015-01-01

Ordinary differential equations (ODEs) are widely used in modeling dynamic systems and have ample applications in the fields of physics, engineering, economics and biological sciences. The ODE parameters often possess physiological meanings and can help scientists gain better understanding of the system. One key interest is thus to well estimate these parameters. Ideally, constant parameters are preferred due to their easy interpretation. In reality, however, constant parameters can be too restrictive such that even after incorporating error terms, there could still be unknown sources of disturbance that lead to poor agreement between observed data and the estimated ODE system. In this paper, we address this issue and accommodate short-term interferences by allowing parameters to vary with time. We propose a new regularized estimation procedure on the time-varying parameters of an ODE system so that these parameters could change with time during transitions but remain constants within stable stages. We found, through simulation studies, that the proposed method performs well and tends to have less variation in comparison to the non-regularized approach. On the theoretical front, we derive finite-sample estimation error bounds for the proposed method. Applications of the proposed method to modeling the hare-lynx relationship and the measles incidence dynamic in Ontario, Canada lead to satisfactory and meaningful results. PMID:26392639

Assessing transmissible spongiform encephalopathy species barriers with an in vitro prion protein conversion assay

USGS Publications Warehouse

Johnson, Christopher J.; Carlson, Christina M.; Morawski, Aaron R.; Manthei, Alyson; Cashman, Neil R.

2015-01-01

Studies to understanding interspecies transmission of transmissible spongiform encephalopathies (TSEs, prion diseases) are challenging in that they typically rely upon lengthy and costly in vivo animal challenge studies. A number of in vitro assays have been developed to aid in measuring prion species barriers, thereby reducing animal use and providing quicker results than animal bioassays. Here, we present the protocol for a rapid in vitroprion conversion assay called the conversion efficiency ratio (CER) assay. In this assay cellular prion protein (PrPC) from an uninfected host brain is denatured at both pH 7.4 and 3.5 to produce two substrates. When the pH 7.4 substrate is incubated with TSE agent, the amount of PrPC that converts to a proteinase K (PK)-resistant state is modulated by the original host’s species barrier to the TSE agent. In contrast, PrPC in the pH 3.5 substrate is misfolded by any TSE agent. By comparing the amount of PK-resistant prion protein in the two substrates, an assessment of the host’s species barrier can be made. We show that the CER assay correctly predicts known prion species barriers of laboratory mice and, as an example, show some preliminary results suggesting that bobcats (Lynx rufus) may be susceptible to white-tailed deer (Odocoileus virginianus) chronic wasting disease agent.

Predicting carnivore occurrence with noninvasive surveys and occupancy modeling

USGS Publications Warehouse

Long, Robert A.; Donovan, Therese M.; MacKay, Paula; Zielinski, William J.; Buzas, Jeffrey S.

2011-01-01

Terrestrial carnivores typically have large home ranges and exist at low population densities, thus presenting challenges to wildlife researchers. We employed multiple, noninvasive survey methods—scat detection dogs, remote cameras, and hair snares—to collect detection–nondetection data for elusive American black bears (Ursus americanus), fishers (Martes pennanti), and bobcats (Lynx rufus) throughout the rugged Vermont landscape. We analyzed these data using occupancy modeling that explicitly incorporated detectability as well as habitat and landscape variables. For black bears, percentage of forested land within 5 km of survey sites was an important positive predictor of occupancy, and percentage of human developed land within 5 km was a negative predictor. Although the relationship was less clear for bobcats, occupancy appeared positively related to the percentage of both mixed forest and forested wetland habitat within 1 km of survey sites. The relationship between specific covariates and fisher occupancy was unclear, with no specific habitat or landscape variables directly related to occupancy. For all species, we used model averaging to predict occurrence across the study area. Receiver operating characteristic (ROC) analyses of our black bear and fisher models suggested that occupancy modeling efforts with data from noninvasive surveys could be useful for carnivore conservation and management, as they provide insights into habitat use at the regional and landscape scale without requiring capture or direct observation of study species.

Modernization of the NASA IRTF Telescope Control System

NASA Astrophysics Data System (ADS)

Pilger, Eric J.; Harwood, James V.; Onaka, Peter M.

1994-06-01

We describe the ongoing modernization of the NASA IR Telescope Facility Telescope Control System. A major mandate of this project is to keep the telescope available for observations throughout. Therefore, we have developed an incremental plan that will allow us to replace components of the software and hardware without shutting down the system. The current system, running under FORTH on a DEC LSI 11/23 minicomputer interfaced to a Bus and boards developed in house, will be replaced with a combination of a Sun SPARCstation running SunOS, a MicroSPARC based Single Board Computer running LynxOS, and various intelligent VME based peripheral cards. The software is based on a design philosophy originally developed by Pat Wallace for use on the Anglo Australian Telescope. This philosophy has gained wide acceptance, and is currently used in a number of observatories around the world. A key element of this philosophy is the division of the TCS into `Virtual' and `Real' parts. This will allow us to replace the higher level functions of the TCS with software running on the Sun, while still relying on the LSI 11/23 for performance of the lower level functions. Eventual transfer of lower level functions to the MicroSPARC system will then proceed incrementally through use of a Q-Bus to VME-Bus converter.

Effects of urbanization on carnivore species distribution and richness

USGS Publications Warehouse

Ordenana, Miguel A.; Crooks, Kevin R.; Boydston, Erin E.; Fisher, Robert N.; Lyren, Lisa M.; Siudyla, Shalene; Haas, Christopher D.; Harris, Sierra; Hathaway, Stacie A.; Turschak, Greta M.; Miles, A. Keith; Van Vuren, Dirk H.

2010-01-01

Urban development can have multiple effects on mammalian carnivore communities. We conducted a meta-analysis of 7,929 photographs from 217 localities in 11 camera-trap studies across coastal southern California to describe habitat use and determine the effects of urban proximity (distance to urban edge) and intensity (percentage of area urbanized) on carnivore occurrence and species richness in natural habitats close to the urban boundary. Coyotes (Canis latrans) and bobcats (Lynx rufus) were distributed widely across the region. Domestic dogs (Canis lupus familiaris), striped skunks (Mephitis mephitis), raccoons (Procyon lotor), gray foxes (Urocyon cinereoargenteus), mountain lions (Puma concolor), and Virginia opossums (Didelphis virginiana) were detected less frequently, and long-tailed weasels (Mustela frenata), American badgers (Taxidea taxus), western spotted skunks (Spilogale gracilis), and domestic cats (Felis catus) were detected rarely. Habitat use generally reflected availability for most species. Coyote and raccoon occurrence increased with both proximity to and intensity of urbanization, whereas bobcat, gray fox, and mountain lion occurrence decreased with urban proximity and intensity. Domestic dogs and Virginia opossums exhibited positive and weak negative relationships, respectively, with urban intensity but were unaffected by urban proximity. Striped skunk occurrence increased with urban proximity but decreased with urban intensity. Native species richness was negatively associated with urban intensity but not urban proximity, probably because of the stronger negative response of individual species to urban intensity.

Regulating Critical Period Plasticity: Insight from the Visual System to Fear Circuitry for Therapeutic Interventions

PubMed Central

Nabel, Elisa M.; Morishita, Hirofumi

2013-01-01

Early temporary windows of heightened brain plasticity called critical periods developmentally sculpt neural circuits and contribute to adult behavior. Regulatory mechanisms of visual cortex development – the preeminent model of experience-dependent critical period plasticity-actively limit adult plasticity and have proved fruitful therapeutic targets to reopen plasticity and rewire faulty visual system connections later in life. Interestingly, these molecular mechanisms have been implicated in the regulation of plasticity in other functions beyond vision. Applying mechanistic understandings of critical period plasticity in the visual cortex to fear circuitry may provide a conceptual framework for developing novel therapeutic tools to mitigate aberrant fear responses in post traumatic stress disorder. In this review, we turn to the model of experience-dependent visual plasticity to provide novel insights for the mechanisms regulating plasticity in the fear system. Fear circuitry, particularly fear memory erasure, also undergoes age-related changes in experience-dependent plasticity. We consider the contributions of molecular brakes that halt visual critical period plasticity to circuitry underlying fear memory erasure. A major molecular brake in the visual cortex, perineuronal net formation, recently has been identified in the development of fear systems that are resilient to fear memory erasure. The roles of other molecular brakes, myelin-related Nogo receptor signaling and Lynx family proteins – endogenous inhibitors for nicotinic acetylcholine receptor, are explored in the context of fear memory plasticity. Such fear plasticity regulators, including epigenetic effects, provide promising targets for therapeutic interventions. PMID:24273519

The O VI Mystery: Mismatch between X-Ray and UV Column Densities

NASA Astrophysics Data System (ADS)

Mathur, S.; Nicastro, F.; Gupta, A.; Krongold, Y.; McLaughlin, B. M.; Brickhouse, N.; Pradhan, A.

2017-12-01

The UV spectra of Galactic and extragalactic sightlines often show O VI absorption lines at a range of redshifts, and from a variety of sources from the Galactic circumgalactic medium to active galactic nuclei (AGN) outflows. Inner shell O VI absorption is also observed in X-ray spectra (at λ =22.03 Å), but the column density inferred from the X-ray line was consistently larger than that from the UV line. Here we present a solution to this discrepancy for the z = 0 systems. The O II Kβ line {}4{S}0\\to {(}3D)3{p}4P at 562.40 eV (≡22.04 Å) is blended with the O VI Kα line in X-ray spectra. We estimate the strength of this O II line in two different ways, and show that in most cases the O II line accounts for the entire blended line. The small amount of O VI equivalent width present in some cases has column density entirely consistent with the UV value. This solution to the O VI discrepancy, however, does not apply to high column-density systems like AGN outflows. We discuss other possible causes to explain their UV/X-ray mismatch. The O VI and O II lines will be resolved by gratings on board the proposed mission Arcus and the concept mission Lynx, and would allow the detection of weak O VI lines not just at z = 0, but also at higher redshift.

The Potential and Flux Landscape Theory of Ecology

PubMed Central

Zhang, Kun; Wang, Erkang; Wang, Jin

2014-01-01

The species in ecosystems are mutually interacting and self sustainable stable for a certain period. Stability and dynamics are crucial for understanding the structure and the function of ecosystems. We developed a potential and flux landscape theory of ecosystems to address these issues. We show that the driving force of the ecological dynamics can be decomposed to the gradient of the potential landscape and the curl probability flux measuring the degree of the breaking down of the detailed balance (due to in or out flow of the energy to the ecosystems). We found that the underlying intrinsic potential landscape is a global Lyapunov function monotonically going down in time and the topology of the landscape provides a quantitative measure for the global stability of the ecosystems. We also quantified the intrinsic energy, the entropy, the free energy and constructed the non-equilibrium thermodynamics for the ecosystems. We studied several typical and important ecological systems: the predation, competition, mutualism and a realistic lynx-snowshoe hare model. Single attractor, multiple attractors and limit cycle attractors emerge from these studies. We studied the stability and robustness of the ecosystems against the perturbations in parameters and the environmental fluctuations. We also found that the kinetic paths between the multiple attractors do not follow the gradient paths of the underlying landscape and are irreversible because of the non-zero flux. This theory provides a novel way for exploring the global stability, function and the robustness of ecosystems. PMID:24497975

The carnivore remains from the Sima de los Huesos Middle Pleistocene site (Sierra de Atapuerca, Spain).

PubMed

García, N; Arsuaga, J L; Torres, T

1997-01-01

Remains of carnivores from the Sima de los Huesos site representing at least 158 adult individuals of a primitive (i.e., not very speleoid) form of Ursus deningeri Von Reichenau 1906, have been recovered through the 1995 field season. These new finds extend our knowledge of this group in the Sierra de Atapuerca Middle Pleistocene. Material previously classified as Cuoninae indet, is now assigned to Canis lupus and a third metatarsal assigned in 1987 to Panthera of gombaszoegensis, is in our opinion only attributable to Panthera sp. The family Mustelidae is added to the faunal list and includes Martes sp. and a smaller species. The presence of Panthera leo cf. fossilis, Lynx pardina spelaea and Felis silvestris, is confirmed. The presence of a not very speloid Ursus deningeri, together with the rest of the carnivore assemblage, points to a not very late Middle Pleistocene age, i.e., oxygen isotope stage 7 or older. Relative frequencies of skeletal elements for the bear and fox samples are without major biases. The age structure of the bear sample, based on dental wear stages, does not follow the typical hibernation mortality profile and resembles a catastrophic profile. The site was not a natal or refuge den. The hypothesis that the site was a natural trap is the most plausible. If the Sima de los Huesos functioned as a natural trap (without an egress out), the human accumulation cannot be attributed to carnivore: activities and must be explained differently.

Head position of helicopter pilots during slalom maneuvers.

PubMed

Temme, Leonard A; Still, David L

2007-01-01

Pilots typically tilt their heads when executing coordinated banking turns, a phenomenon commonly attributed to the putative opto-kinetic cervical reflex (OKCR). The OKCR is usually described as a reflex, primarily driven by stimuli in the visual periphery, and is important to a pilot's spatial orientation by providing a relatively stabilized horizontal frame of reference. The present paper presents an alternative hypothesis for the observed head tilting seen in pilots. An archived data set, originally collected for other purposes, contained the head turn, pitch, and tilt of 4 helicopter pilots recorded at 10 Hz as the pilots executed 42 slalom maneuvers in an AH Mk 7 Lynx helicopter under visual flight conditions. The analytic method was a correlational analysis of head turn, pitch, and tilt. As expected, pilots routinely tilted their heads during the slaloms in a fashion typically attributed to the OKCR. Correlations among head turn, tilt, and pitch showed that when the helicopter turned left, the head, presumably to look into the turn, turned left and also pitched up and tilted right. Similarly, when the helicopter turned right, the head, presumably to look into the turn, turned right, pitched up, and tilted left. The head tilting usually attributed to a neuromuscular reflex driven by visual stimuli may be a biomechanical consequence of the head posture pilots assume when they simply look where they are going, eliminating the need to postulate the existence of a novel neuromuscular reflex.

ThermoYield actuators: nano-adjustable set-and-forget optics mounts

NASA Astrophysics Data System (ADS)

DeTienne, Michael D.; Bruccoleri, Alexander R.; Chalifoux, Brandon; Heilmann, Ralf K.; Tedesco, Ross E.; Schattenburg, Mark L.

2017-08-01

The X-ray optics community has been developing technology for high angular resolution, large collecting area X-ray telescopes such as the Lynx X-ray telescope concept. To meet the high collecting area requirements of such telescope concepts, research is being conducted on thin, segmented optics. The mounts that fixture and align segmented optics must be the correct length to sub-micron accuracy to satisfy the angular resolution goals of such a concept. Set-andforget adjustable length optical mounting posts have been developed to meet this need. The actuator consists of a cylinder made of metal. Halfway up the height of the metal cylinder, a reduced diameter cylindrical neck is cut. To change the length of this actuator, an axial compressive or tensile force is applied to the actuator. A high-current electrical pulse is sent through the actuator, and this electrical current resistively heats the neck of the actuator. This heating temporarily reduces the yield strength of the neck, so that the applied force plastically deforms the neck. Once the current stops and the neck cools, the neck will regain yield strength, and the plastic deformation will stop. All of the plastic deformation that occurred during heating is now permanent. Both compression and expansion of these actuators has been demonstrated in steps ranging from 6 nanometers to several microns. This paper will explain the concept of ThermoYield actuation, explore X-ray telescope applications, describe an experimental setup, show and discuss data, and propose future ideas.

Hierarchical animal movement models for population-level inference

USGS Publications Warehouse

Hooten, Mevin B.; Buderman, Frances E.; Brost, Brian M.; Hanks, Ephraim M.; Ivans, Jacob S.

2016-01-01

New methods for modeling animal movement based on telemetry data are developed regularly. With advances in telemetry capabilities, animal movement models are becoming increasingly sophisticated. Despite a need for population-level inference, animal movement models are still predominantly developed for individual-level inference. Most efforts to upscale the inference to the population level are either post hoc or complicated enough that only the developer can implement the model. Hierarchical Bayesian models provide an ideal platform for the development of population-level animal movement models but can be challenging to fit due to computational limitations or extensive tuning required. We propose a two-stage procedure for fitting hierarchical animal movement models to telemetry data. The two-stage approach is statistically rigorous and allows one to fit individual-level movement models separately, then resample them using a secondary MCMC algorithm. The primary advantages of the two-stage approach are that the first stage is easily parallelizable and the second stage is completely unsupervised, allowing for an automated fitting procedure in many cases. We demonstrate the two-stage procedure with two applications of animal movement models. The first application involves a spatial point process approach to modeling telemetry data, and the second involves a more complicated continuous-time discrete-space animal movement model. We fit these models to simulated data and real telemetry data arising from a population of monitored Canada lynx in Colorado, USA.

Comments on 'Origin of British and Irish mammals: disparate post-glacial colonisation and species introductions' by W.I. Montgomery, J. Provan, A.M. McCabe, and D.W. Yalden

NASA Astrophysics Data System (ADS)

Edwards, Ceiridwen J.

2014-12-01

Montgomery et al.'s recent paper in QSR (2014; vol. 98: 144-165) is a most welcome addition to the ongoing research into the origins of Irish mammals. In their Table 1, the authors have used "calibrated carbon dating, comparable stratigraphy and historical records … to establish the earliest known time of arrival of a species in […] Ireland […] where relevant, the latest record of a mammal species [was] used to establish the earliest date after which it was extinct". It is assumed that the dates mentioned in this table are, therefore, calibrated. However, this is very unclear - when dates generated by the Irish Quaternary Fauna project (Woodman et al., 1997) are compared with those used by Montgomery et al. (2014), the earliest recorded dates of Mountain/Irish hare, Irish stoat, lynx and pine marten seem to be direct uncalibrated dates. It is also unclear whether the earliest and latest records of each species relate to all published data available at the time of writing. Even if only consulting those dates generated by Woodman et al. (1997), there are older earliest records for Arctic Fox, Collared lemming and grey wolf. In addition, Montgomery et al. (2014) do not seem to have included early radiocarbon dates for giant deer, reindeer and red deer (Woodman et al., 1997; Carden et al., 2012), or any of the recent radiocarbon dates for brown bear (Edwards et al., 2011), despite reference to these papers.

Toward Large Field-of-View High-Resolution X-ray Imaging Spectrometers: Microwave Multiplexed Readout of 28 TES Microcalorimeters

NASA Astrophysics Data System (ADS)

Yoon, W.; Adams, J. S.; Bandler, S. R.; Becker, D.; Bennett, D. A.; Chervenak, J. A.; Datesman, A. M.; Eckart, M. E.; Finkbeiner, F. M.; Fowler, J. W.; Gard, J. D.; Hilton, G. C.; Kelley, R. L.; Kilbourne, C. A.; Mates, J. A. B.; Miniussi, A. R.; Moseley, S. H.; Noroozian, O.; Porter, F. S.; Reintsema, C. D.; Sadleir, J. E.; Sakai, K.; Smith, S. J.; Stevenson, T. R.; Swetz, D. S.; Ullom, J. N.; Vale, L. R.; Wakeham, N. A.; Wassell, E. J.; Wollack, E. J.

2018-04-01

We performed small-scale demonstrations at GSFC of high-resolution X-ray TES microcalorimeters read out using a microwave SQUID multiplexer. This work is part of our effort to develop detector and readout technologies for future space-based X-ray instruments such as the microcalorimeter spectrometer envisaged for Lynx, a large mission concept under development for the Astro 2020 Decadal Survey. In this paper we describe our experiment, including details of a recently designed, microwave-optimized low-temperature setup that is thermally anchored to the 55 mK stage of our laboratory ADR. Using a ROACH2 FPGA at room temperature, we read out pixels of a GSFC-built detector array via a NIST-built multiplexer chip with Nb coplanar waveguide resonators coupled to rf-SQUIDs. The resonators are spaced 6 MHz apart (at ˜ 5.9 GHz) and have quality factors of ˜ 15,000. In our initial demonstration, we used flux-ramp modulation frequencies of 125 kHz to read out 5 pixels simultaneously and achieved spectral resolutions of 2.8-3.1 eV FWHM at 5.9 keV. Our subsequent work is ongoing: to-date we have achieved a median spectral resolution of 3.4 eV FWHM at 5.9 keV while reading out 28 pixels simultaneously with flux-ramp frequencies of 160 kHz. We present the measured system-level noise and maximum slew rates and briefly describe our future development work.

Radioecological modelling of Polonium-210 and Caesium-137 in lichen-reindeer-man and top predators.

PubMed

Persson, Bertil R R; Gjelsvik, Runhild; Holm, Elis

2018-06-01

This work deals with analysis and modelling of the radionuclides 210 Pb and 210 Po in the food-chain lichen-reindeer-man in addition to 210 Po and 137 Cs in top predators. By using the methods of Partial Least Square Regression (PLSR) the atmospheric deposition of 210 Pb and 210 Po is predicted at the sample locations. Dynamic modelling of the activity concentration with differential equations is fitted to the sample data. Reindeer lichen consumption, gastrointestinal absorption, organ distribution and elimination is derived from information in the literature. Dynamic modelling of transfer of 210 Pb and 210 Po to reindeer meat, liver and bone from lichen consumption, fitted well with data from Sweden and Finland from 1966 to 1971. The activity concentration of 210 Pb in the skeleton in man is modelled by using the results of studying the kinetics of lead in skeleton and blood in lead-workers after end of occupational exposure. The result of modelling 210 Pb and 210 Po activity in skeleton matched well with concentrations of 210 Pb and 210 Po in teeth from reindeer-breeders and autopsy bone samples in Finland. The results of 210 Po and 137 Cs in different tissues of wolf, wolverine and lynx previously published, are analysed with multivariate data processing methods such as Principal Component Analysis PCA, and modelled with the method of Projection to Latent Structures, PLS, or Partial Least Square Regression PLSR. Copyright © 2017 Elsevier Ltd. All rights reserved.

75 FR 29361 - Notice of Intent To Prepare an Environmental Assessment for the Proposed Competitive Geothermal...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-05-25

...In compliance with the National Environmental Policy Act of 1969 (NEPA), as amended, and the Federal Land Policy and Management Act of 1976 (FLPMA), as amended, the Bureau of Land Management (BLM) Gunnison Field Office, Gunnison, Colorado intends to prepare an Environmental Assessment (EA) to consider whether, and under what conditions, to issue geothermal leases under pending nominations, which may include an amendment to the Gunnison Resource Area Approved Resource Management Plan (RMP) of February 1993, as amended by the RMP Amendments for Geothermal Leasing in the Western United States (2008). While the area nominated for geothermal leasing is allocated as open to consideration for geothermal leasing under the amended Plan, and the proposed level of development contemplated in the amended Plan will not be exceeded by issuance of the proposed leases, the Reasonably Foreseeable Development scenario for the resource area has been refined and updated since that time, and additional stipulations to protect other resources and uses may be developed through this process and adopted into the Plan. The BLM proposes to amend the existing Gunnison Resource Area RMP using the NEPA analysis to support its decision. Review of the RMP is necessary due to recently updated information regarding the presence of Gunnison sage-grouse and Canada lynx habitat that was not analyzed in the existing RMP. The BLM, by this notice, is announcing the beginning of the scoping process to solicit public comments and identify issues.

The role of Chandra in ten years from now and for the next few decades of astrophysical research

NASA Astrophysics Data System (ADS)

D'Abrusco, Raffaele; Becker, Glenn E.; McCollough, Michael L.; Rots, Arnold H.; Thong, Sinh A.; Van Stone, David; Winkelman, Sherry

2018-06-01

For almost twenty years, Chandra has advanced our understanding of the X-ray Universe by allowing astronomers to peer into a previously unexplored region of the high-energy observational parameters space. Thanks to its longevity,the mission has accumulated a large, unique body of observations whose legacy value, already tangible at this point, will only increase with time, and whose long-lasting influence extends well beyond the energy interval probed by Chandra. The Chandra archive, through the extensive characterization of the links between observations and literature, has measured the impact of Chandra on the astrophysical literature at a high level of granularity, providing striking evidence of how deeply and widely Chandra has impacted the advancement of both high-energy astrophysics and astronomical research from a multi-wavelength perspective. In this talk, based on the missions that have been submitted for recommendation at the next decadal survey and the possible outcomes of the evaluation process, I will discuss how Chandra archival data can be used to anticipate the projected scientific success and long-lasting effects of a X-ray mission like Lynx or, differently, how they will become instrumental to maximize the scientific output of a new generation of facilities that will observe in different energies. I will argue that, in either scenario, the centrality of Chandra will extend well after the final demise of the mission, and its data will continue serving the community in many different ways for the foreseeable future.

Water conditioning and whooping crane survival after release in Florida

USGS Publications Warehouse

Gee, G.F.; Nicolich, Jane M.; Nesbitt, S.A.; Hatfield, J.S.; Ellis, D.H.; Olsen, Glenn H.

2001-01-01

About 50% of the whooping cranes (Grus americana) released in Florida die within the first year of release. Most of these deaths and those in subsequent years result from bobcat (Lynx rufus) predation. Choosing release sites in open marshes away from bobcat habitat has improved survival. We hypothesized that exposure to ponds (water conditioning) at the rearing site would encourage birds to roost in deeper water marshes after release and such exposure would thereby reduce bobcat predation. In this study, we moved young birds (ca 50 days of age) to netted pens with large (15-m diameter), deep 30-60 cm) naturally vegetated ponds. We randomly assigned the costume-reared whooping cranes into 2 equal-sized groups at fledging. Some groups were placed in pens with a pond (experimental or ponded groups) and the others we reared without additional water exposure (control groups). All birds in the pens with ponds used the water. At night, they roosted at a depth of 36-46 cm. During the day, the birds used the ponds as well as other areas of the pen. We released 3 pairs of water-conditioned and control cohorts, 1 set in 1995 and 2 in 1996. No obvious behavioral differences were noted between the cohorts released in those years. Controls survived as expected (about 60% first year survival). The water-conditioned birds had much higher survival the first year (85%) and continued to survive better for the next 3 years.

Use of somatic cell banks in the conservation of wild felids.

PubMed

Praxedes, Érika A; Borges, Alana A; Santos, Maria V O; Pereira, Alexsandra F

2018-05-03

The conservation of biological resources is an interesting strategy for the maintenance of biodiversity, especially for wild felids who are constantly threatened with extinction. For this purpose, cryopreservation techniques have been used for the long-term storage of gametes, embryos, gonadal tissues, and somatic cells and tissues. The establishment of these banks has been suggested as a practical approach to the preservation of species and, when done in tandem with assisted reproductive techniques, could provide the means for reproducing endangered species. Somatic cell banks have been shown remarkable for the conservation of genetic material of felids; by merely obtaining skin samples, it is possible to sample a large group of individuals without being limited by factors such as gender or age. Thus, techniques for somatic tissue recovery, cryopreservation, and in vitro culture of different wild felids have been developed, resulting in a viable method for the conservation of species. One of the most notable conservation programs for wild felines using somatic samples was the one carried out for the Iberian lynx, the most endangered feline in the world. Other wild felids have also been studied in other continents, such as the jaguar in South America. This review aims to present the technical progress achieved in the conservation of somatic cells and tissues in different wild felids, as well address the progress that has been achieved in a few species. © 2018 Wiley Periodicals, Inc.

Novel Hepatozoon in vertebrates from the southern United States.

PubMed

Allen, Kelly E; Yabsley, Michael J; Johnson, Eileen M; Reichard, Mason V; Panciera, Roger J; Ewing, Sidney A; Little, Susan E

2011-08-01

Novel Hepatozoon spp. sequences collected from previously unrecognized vertebrate hosts in North America were compared with documented Hepatozoon 18S rRNA sequences in an effort to examine phylogenetic relationships between the different Hepatozoon organisms found cycling in nature. An approximately 500-base pair fragment of 18S rDNA common to Hepatozoon spp. and some other apicomplexans was amplified and sequenced from the tissues or blood of 16 vertebrate host species from the southern United States, including 1 opossum (Didelphis virginiana), 2 bobcats (Lynx rufus), 1 domestic cat (Felis catus), 3 coyotes (Canis latrans), 1 gray fox (Urocyon cinereoargenteus), 4 raccoons (Procyon lotor), 1 pet boa constrictor (Boa constrictor imperator), 1 swamp rabbit (Sylvilagus aquaticus), 1 cottontail rabbit (Sylvilagus floridanus), 4 woodrats (Neotoma fuscipes and Neotoma micropus), 3 white-footed mice (Peromyscus leucopus), 8 cotton rats (Sigmodon hispidus), 1 cotton mouse (Peromyscus gossypinus), 1 eastern grey squirrel (Sciurus carolinensis), and 1 woodchuck (Marmota monax). Phylogenetic analyses and comparison with sequences in the existing database revealed distinct groups of Hepatozoon spp., with clusters formed by sequences obtained from scavengers and carnivores (opossum, raccoons, canids, and felids) and those obtained from rodents. Surprisingly, Hepatozoon spp. sequences from wild rabbits were most closely related to sequences obtained from carnivores (97.2% identical), and the sequence from the boa constrictor was most closely related to the rodent cluster (97.4% identical). These data are consistent with recent work identifying prey-predator transmission cycles in Hepatozoon spp. and suggest this pattern may be more common than previously recognized.

Prey-mediated avoidance of an intraguild predator by its intraguild prey

USGS Publications Warehouse

Wilson, R.R.; Blankenship, T.L.; Hooten, M.B.; Shivik, J.A.

2010-01-01

Intraguild (IG) predation is an important factor influencing community structure, yet factors allowing coexistence of IG predator and IG prey are not well understood. The existence of spatial refuges for IG prey has recently been noted for their importance in allowing coexistence. However, reduction in basal prey availability might lead IG prey to leave spatial refuges for greater access to prey, leading to increased IG predation and fewer opportunities for coexistence. We determined how the availability of prey affected space-use patterns of bobcats (Lynx rufus, IG prey) in relation to coyote space-use patterns (Canis latrans, IG predators). We located animals from fall 2007 to spring 2009 and estimated bobcat home ranges and core areas seasonally. For each bobcat relocation, we determined intensity of coyote use, distance to water, small mammal biomass, and mean small mammal biomass of the home range during the season the location was collected. We built generalized linear mixed models and used Akaike Information Criteria to determine which factors best predicted bobcat space use. Coyote intensity was a primary determinant of bobcat core area location. In bobcat home ranges with abundant prey, core areas occurred where coyote use was low, but shifted to areas intensively used by coyotes when prey declined. High spatial variability in basal prey abundance allowed some bobcats to avoid coyotes while at the same time others were forced into more risky areas. Our results suggest that multiple behavioral strategies associated with spatial variation in basal prey abundance likely allow IG prey and IG predators to coexist. ?? 2010 Springer-Verlag.

Gammaretrovirus-specific antibodies in free-ranging and captive Namibian cheetahs.

PubMed

Krengel, Annika; Cattori, Valentino; Meli, Marina L; Wachter, Bettina; Böni, Jürg; Bisset, Leslie R; Thalwitzer, Susanne; Melzheimer, Jörg; Jago, Mark; Hofmann-Lehmann, Regina; Hofer, Heribert; Lutz, Hans

2015-06-01

The cheetah population in Namibia is the largest free-ranging population in the world and a key population for research regarding the health status of this species. We used serological methods and quantitative real-time PCR to test free-ranging and captive Namibian cheetahs for the presence of feline leukemia virus (FeLV), a gammaretrovirus that can be highly aggressive in populations with low genetic diversity, such as cheetahs. We also assessed the presence of antibodies to other gammaretroviruses and the responses to a FeLV vaccine developed for domestic cats. Up to 19% of the free-ranging cheetahs, 27% of the captive nonvaccinated cheetahs, and 86% of the captive vaccinated cheetahs tested positive for FeLV antibodies. FeLV-antibody-positive free-ranging cheetahs also tested positive for Rauscher murine leukemia virus antibodies. Nevertheless, FeLV was not detectable by quantitative real-time PCR and no reverse transcriptase activity was detectable by product-enhanced reverse transcriptase assay in the plasma of cheetahs or the supernatants from cultures of peripheral blood mononuclear cells. The presence of antibodies to gammaretroviruses in clinically healthy specimens may be caused either by infection with a low-pathogenic retrovirus or by the expression of endogenous retroviral sequences. The strong humoral immune responses to FeLV vaccination demonstrate that cheetahs can respond to the vaccine and that vaccination against FeLV infection may be beneficial should FeLV infection ever become a threat, as was seen in Iberian lynx and Florida panthers. Copyright © 2015, American Society for Microbiology. All Rights Reserved.

Gammaretrovirus-Specific Antibodies in Free-Ranging and Captive Namibian Cheetahs

PubMed Central

Krengel, Annika; Cattori, Valentino; Meli, Marina L.; Wachter, Bettina; Böni, Jürg; Bisset, Leslie R.; Thalwitzer, Susanne; Melzheimer, Jörg; Jago, Mark; Hofmann-Lehmann, Regina; Hofer, Heribert

2015-01-01

The cheetah population in Namibia is the largest free-ranging population in the world and a key population for research regarding the health status of this species. We used serological methods and quantitative real-time PCR to test free-ranging and captive Namibian cheetahs for the presence of feline leukemia virus (FeLV), a gammaretrovirus that can be highly aggressive in populations with low genetic diversity, such as cheetahs. We also assessed the presence of antibodies to other gammaretroviruses and the responses to a FeLV vaccine developed for domestic cats. Up to 19% of the free-ranging cheetahs, 27% of the captive nonvaccinated cheetahs, and 86% of the captive vaccinated cheetahs tested positive for FeLV antibodies. FeLV-antibody-positive free-ranging cheetahs also tested positive for Rauscher murine leukemia virus antibodies. Nevertheless, FeLV was not detectable by quantitative real-time PCR and no reverse transcriptase activity was detectable by product-enhanced reverse transcriptase assay in the plasma of cheetahs or the supernatants from cultures of peripheral blood mononuclear cells. The presence of antibodies to gammaretroviruses in clinically healthy specimens may be caused either by infection with a low-pathogenic retrovirus or by the expression of endogenous retroviral sequences. The strong humoral immune responses to FeLV vaccination demonstrate that cheetahs can respond to the vaccine and that vaccination against FeLV infection may be beneficial should FeLV infection ever become a threat, as was seen in Iberian lynx and Florida panthers. PMID:25809630

Evolution of the felid brain.

PubMed

Radinsky, L

1975-01-01

Endocranial casts of 15 genera of fossil felids provide a record of felid brain evolution over the past 35 million years. Brains of the earliest felids, known as paleofelids, had coronolateral, suprasylvian and variably developed ectosylvian sulci as their only neocortical sulci. The last paleofelids, which became extinct around 8 million years ago, show little change in external brain morphology except for the addition of a presylvian sulcus. The other group of felids, the neofelids, appears about 25 million years ago, with coronolateral and suprasylvian sulci their main neocortical sulci, plus a discontinuous ectosylvian sulcus and small postlateral, sylvian and presylvian sulci. The posterior cerebellar vermis was straight and unexpanded. Beginnings of expansion of the sigmoid gyri and development of the cruciate sulcus are evident in neofelids 15-20 million years ago, and by 5-9 million years ago neofelids had brains that appear modern in external morphology. Endocasts of four genera of Pleistocene saber-toothed felids are similar in sulcal pattern to those of modern felids, except for Dinobastis, which had a unique expansion of visual cortex. Endocasts of 27 species of modern felids, representing the six commonly recognized genera, are strikingly similar in external morphology, although the brains of a few species, such as cheetahs, lynxes and jagouarundis, display distinguishing features. Modern felid brains average about the same size relative to body weight as do those of viverrids, but are about 25% smaller in relative size than those of canids. Olfactory bulbs are relatively smaller in felids than in canids or viverrids.

Pulpal temperature increase with high-speed handpiece, Er:YAG laser and ultrasound tips.

PubMed

Mollica, Fernanda Brandão; Camargo, Fernanda Pelogia; Zamboni, Sandra Costa; Pereira, Sarina Maciel Braga; Teixeira, Symone Cristina; Nogueira, Lafayette

2008-01-01

The aim of this study was to compare intrapulpal temperature increase produced by high-speed handpiece, Er:YAG laser and CVDentus ultrasound tips during cavity preparation. Thirty bovine mandibular incisors with an enamel/dentin thickness of 4 mm at buccal surface had their roots amputated and were allocated to the following groups (n=10): Group I- high-speed handpiece; Group II- noncontact Er:YAG laser (250 mJ/4 Hz); and Group III- CVDentus ultrasouns tips. All devices were used with water cooling. Class V cavities were prepared to a depth of 3.5 mm, measured with a periodontal probe. A type T thermocouple was placed inside the pulp chamber to determine the temperature increase (degrees C), which was recorded by a data acquisition system ADS 2000 IP (Lynx Technology) linked to a notebook computer. Data were analyzed statistically by one-way ANOVA and Tukey's test (p=0.05). The mean temperature rises were: 1.10 degrees C (+/-0.56) for Group I, 0.84 degrees C (+/-0.55) for Group II, and 3.00 degrees C (+/- 1.34) for Group III. There were no statistically significant differences (p>0.05) between Groups I and II, but both of them differed significantly from Group III (p<0.05). In conclusion, the use of Er:YAG laser and high-speed handpiece for cavity preparation resulted in similar temperature increase. Although ultrasound tips generated significantly higher intrapulpal temperature increase, it remained below the critical value of 5.5 degrees C and may be considered safe for use.

Maldi-tof fingerprinting of seminal plasma lipids in the study of human male infertility.

PubMed

Camargo, Mariana; Intasqui, Paula; de Lima, Camila Bruna; Montani, Daniela Antunes; Nichi, Marcílio; Pilau, Eduardo Jorge; Gozzo, Fabio Cesar; Lo Turco, Edson Guimarães; Bertolla, Ricardo Pimenta

2014-09-01

This study proposed lipid fingerprinting of human seminal plasma by mass spectrometry as an analytical method to differentiate biological conditions. For this purpose, we chose infertile men as a model to study specific conditions, namely: high and low seminal plasma lipid peroxidation levels (sub-study 1.1), high and low sperm nuclear DNA fragmentation (sub-study 1.2), and intervention status: before and after subinguinal microsurgical varicocelectomy (study 2). Study 1 included 133 patients, of which 113 were utilized for sub-study 1.1 and 89 for sub-study 1.2. Study 2 included 17 adult men submitted to subinguinal varicocelectomy, before and 90 days after varicocelectomy. Lipids were extracted from seminal plasma and submitted to Matrix-Assisted Laser Desorption Ionization Quadrupole-Time-of-Flight Mass Spectrometry in the positive ionization mode. Spectra were processed using Waters(®) MassLynx, and MetaboAnalyst online software was used for statistical analyses. For sub-studies 1.1 and 1.2, and study 2, univariate analysis revealed 8, 87 and 34 significant ions, respectively. Multivariate analysis was performed through PCA and PLS-DA. PCA generated 56, 32 and 34 components respectively for each study and these were submitted to logistic regression. A ROC curve was plotted and the area under the curve was equal to 97.4, 92.5 and 96.5%. PLS-DA generated a list of 19, 24 and 23 VIP ions for sub-studies 1.1 and 1.2, and study 2, respectively. Therefore, this study established the lipid profile and comparison of patterns altered in response to specific biological conditions.

Activation of QA devices and phantom materials under clinical scanning proton beams—a gamma spectrometry study

NASA Astrophysics Data System (ADS)

Hanušová, Tereza; Johnová, Kamila; Navrátil, Matěj; Valenta, Jiří; Müller, Lutz

2018-06-01

Activation of detectors and phantoms used for commissioning and quality assurance of clinical proton beams may lead to radiation protection issues. Good understanding of the activation nuclide vectors involved is necessary to assess radiation risk for the personnel working with these devices on a daily basis or to fulfill legal requirements regarding transport of radioactive material and its release to the public. 11 devices and material samples were irradiated with a 220 MeV proton pencil beam (PBS, Proton Therapy Center, Prague). This study focuses on devices manufactured by IBA Dosimetry GmbH: MatriXX PT, PPC05, Stingray, Zebra, Lynx, a Blue Phantom rail and samples of RW3, PMMA, titanium, copper and carbon fibre plastic. Monitor units (MU) were monitored during delivery. Gamma spectrometry was then performed for each item using a HPGe detector, with a focus on longer lived gamma emitting radionuclides. Activities were quantified for all found isotopes and compared to relevant legal limits for exemption and clearance of radioactive objects. Activation was found to be significant after long irradiation sessions, as done during commissioning of a proton therapy room. Some of the investigated devices may also cumulate activity in time, depending on the scenario of periodic irradiation in routine clinical practice. However, the levels of activity and resulting beta/gamma doses are more comparable to internationally recommended concentration limits for exemption than to dose limits for radiation workers. Results of this study will help to determine nuclide inventories required by some legal authorities for radiation protection purposes.

Spatial organization of a reintroduced population of bobcats

USGS Publications Warehouse

Diefenbach, D.R.; Hansen, L.A.; Warren, R.J.; Conroy, M.J.

2006-01-01

The spacing patterns and mating systems of solitary carnivores have important implications for social behavior and for the survival and reproduction of individuals. Over 2 years, we reintroduced 32 (15 males and 17 females) bobcats (Lynx rufus) to a barrier island off the coast of Georgia and studied patterns of bobcat spatial distribution. Population density increased to 3.1 bobcats/10 km2. We found overlap of the home range for all females on the island increased during 1989-1991 such that, on average, each female shared a home-range area with the equivalent of >2 other females, and for core areas overlap was equivalent to sharing a core area with nearly 1 other female. Reproduction and home-range overlap were related inversely and food resources did not seem to be limiting. Our results were consistent with the land tenure concept in that the initial reintroduced bobcats established home ranges that changed little in size and location. However, bobcats resident on the island for ??? 1 year did not successfully exclude newcomers from their home ranges or core areas and no bobcats retained areas of exclusive use from conspecifics of the same sex. We suggest that the propensity of female bobcats to reproduce successfully may be related to their access to exclusive use areas even under conditions of adequate or good food availability. Under the conditions in this study (moderate bobcat density, adequate food availability, and limited dispersal) bobcats exhibited no evidence of an ability to exclude other adult individuals from their home ranges or core areas. ?? 2006 American Society of Mammalogists.

Anthropogenic Influences on Macro-Level Mammal Occupancy in the Appalachian Trail Corridor

PubMed Central

Erb, Peter L.; McShea, William J.; Guralnick, Robert P.

2012-01-01

Anthropogenic effects on wildlife are typically assessed at the local level, but it is often difficult to extrapolate to larger spatial extents. Macro-level occupancy studies are one way to assess impacts of multiple disturbance factors that might vary over different geographic extents. Here we assess anthropogenic effects on occupancy and distribution for several mammal species within the Appalachian Trail (AT), a forest corridor that extends across a broad section of the eastern United States. Utilizing camera traps and a large volunteer network of citizen scientists, we were able to sample 447 sites along a 1024 km section of the AT to assess the effects of available habitat, hunting, recreation, and roads on eight mammal species. Occupancy modeling revealed the importance of available forest to all species except opossums (Didelphis virginiana) and coyotes (Canis latrans). Hunting on adjoining lands was the second strongest predictor of occupancy for three mammal species, negatively influencing black bears (Ursus americanus) and bobcats (Lynx rufus), while positively influencing raccoons (Procyon lotor). Modeling also indicated an avoidance of high trail use areas by bears and proclivity towards high use areas by red fox (Vulpes vulpes). Roads had the lowest predictive power on species occupancy within the corridor and were only significant for deer. The occupancy models stress the importance of compounding direct and indirect anthropogenic influences operating at the regional level. Scientists and managers should consider these human impacts and their potential combined influence on wildlife persistence when assessing optimal habitat or considering management actions. PMID:22880038

AXIS - Advanced X-ray Imaging Sarellite

NASA Astrophysics Data System (ADS)

Loewenstein, Michael; AXIS Team

2018-01-01

We present an overview of the Advanced X-ray Imaging Satellite (AXIS), a probe mission concept under study to the 2020 Decadal survey. AXIS follows in the footsteps of the spectacularly successful Chandra X-ray Observatory with similar or higher angular resolution and an order of magnitude more collecting area in the 0.3-10 keV band over a 15' field of view. These capabilities are designed to attain a wide range of science goals such as (i) measuring the event horizon scale structure in AGN accretion disks and the spin of supermassive black holes through monitoring of gravitationally microlensed quasars; (ii) understanding AGN and starburst feedback in galaxies and galaxy clusters through direct imaging of winds and interaction of jets and via spatially resolved imaging of galaxies at high-z; (iii) probing the fueling of AGN by resolving the SMBH sphere of influence in nearby galaxies; (iv) investigating hierarchical structure formation and the SMBH merger rate through measurement of the occurrence rate of dual AGN and occupation fraction of SMBHs; (v) advancing SNR physics and galaxy ecology through large detailed samples of SNR in nearby galaxies; (vi) measuring the Cosmic Web through its connection to cluster outskirts. With a nominal 2028 launch, AXIS benefits from natural synergies with LSST, ELTs, ALMA, WFIRST and ATHENA, and will be a valuable precursor to Lynx. AXIS utilizes breakthroughs in the construction of light-weight X-ray optics from mono-crystalline silicon blocks, and developments in the fabrication of large format, small pixel, high readout detectors.

Activation of QA devices and phantom materials under clinical scanning proton beams-a gamma spectrometry study.

PubMed

Hanušová, Tereza; Johnová, Kamila; Navrátil, Matěj; Valenta, Jiří; Müller, Lutz

2018-06-07

Activation of detectors and phantoms used for commissioning and quality assurance of clinical proton beams may lead to radiation protection issues. Good understanding of the activation nuclide vectors involved is necessary to assess radiation risk for the personnel working with these devices on a daily basis or to fulfill legal requirements regarding transport of radioactive material and its release to the public. 11 devices and material samples were irradiated with a 220 MeV proton pencil beam (PBS, Proton Therapy Center, Prague). This study focuses on devices manufactured by IBA Dosimetry GmbH: MatriXX PT, PPC05, Stingray, Zebra, Lynx, a Blue Phantom rail and samples of RW3, PMMA, titanium, copper and carbon fibre plastic. Monitor units (MU) were monitored during delivery. Gamma spectrometry was then performed for each item using a HPGe detector, with a focus on longer lived gamma emitting radionuclides. Activities were quantified for all found isotopes and compared to relevant legal limits for exemption and clearance of radioactive objects. Activation was found to be significant after long irradiation sessions, as done during commissioning of a proton therapy room. Some of the investigated devices may also cumulate activity in time, depending on the scenario of periodic irradiation in routine clinical practice. However, the levels of activity and resulting beta/gamma doses are more comparable to internationally recommended concentration limits for exemption than to dose limits for radiation workers. Results of this study will help to determine nuclide inventories required by some legal authorities for radiation protection purposes.

Anthropogenic influences on macro-level mammal occupancy in the Appalachian Trail corridor.

PubMed

Erb, Peter L; McShea, William J; Guralnick, Robert P

2012-01-01

Anthropogenic effects on wildlife are typically assessed at the local level, but it is often difficult to extrapolate to larger spatial extents. Macro-level occupancy studies are one way to assess impacts of multiple disturbance factors that might vary over different geographic extents. Here we assess anthropogenic effects on occupancy and distribution for several mammal species within the Appalachian Trail (AT), a forest corridor that extends across a broad section of the eastern United States. Utilizing camera traps and a large volunteer network of citizen scientists, we were able to sample 447 sites along a 1024 km section of the AT to assess the effects of available habitat, hunting, recreation, and roads on eight mammal species. Occupancy modeling revealed the importance of available forest to all species except opossums (Didelphis virginiana) and coyotes (Canis latrans). Hunting on adjoining lands was the second strongest predictor of occupancy for three mammal species, negatively influencing black bears (Ursus americanus) and bobcats (Lynx rufus), while positively influencing raccoons (Procyon lotor). Modeling also indicated an avoidance of high trail use areas by bears and proclivity towards high use areas by red fox (Vulpes vulpes). Roads had the lowest predictive power on species occupancy within the corridor and were only significant for deer. The occupancy models stress the importance of compounding direct and indirect anthropogenic influences operating at the regional level. Scientists and managers should consider these human impacts and their potential combined influence on wildlife persistence when assessing optimal habitat or considering management actions.

The importance of motivation, weapons, and foul odors in driving encounter competition in carnivores.

PubMed

Allen, Maximilian L; Wilmers, Christopher C; Elbroch, L Mark; Golla, Julie M; Wittmer, Heiko U

2016-08-01

Encounter competition is interference competition in which animals directly contend for resources. Ecological theory predicts the trait that determines the resource holding potential (RHP), and hence the winner of encounter competition, is most often body size or mass. The difficulties of observing encounter competition in complex organisms in natural environments, however, has limited opportunities to test this theory across diverse species. We studied the outcome of encounter competition contests among mesocarnivores at deer carcasses in California to determine the most important variables for winning these contests. We found some support for current theory in that body mass is important in determining the winner of encounter competition, but we found that other factors including hunger and species-specific traits were also important. In particular, our top models were "strength and hunger" and "size and hunger," with models emphasizing the complexity of variables influencing outcomes of encounter competition. In addition, our wins above predicted (WAP) statistic suggests that an important aspect that determines the winner of encounter competition is species-specific advantages that increase their RHP, as bobcats (Lynx rufus) and spotted skunks (Spilogale gracilis) won more often than predicted based on mass. In complex organisms, such as mesocarnivores, species-specific adaptations, including strategic behaviors, aggressiveness, and weapons, contribute to competitive advantages and may allow certain species to take control or defend resources better than others. Our results help explain how interspecific competition shapes the occurrence patterns of species in ecological communities. © 2016 by the Ecological Society of America.

Roads influence movement and home ranges of a fragmentation-sensitive carnivore, the bobcat, in an urban landscape

USGS Publications Warehouse

Poessel, Sharon A; Boydston, Erin E.; Lyren, Lisa M.; Fisher, Robert N.; Burdett, Christopher L.; Alonso, Robert S.; Crooks, Kevin R.

2014-01-01

Roads in urbanized areas can impact carnivore populations by constraining their movements and increasing mortality. Bobcats (Lynx rufus) are felids capable of living in urban environments, but are sensitive to habitat fragmentation and, thus, useful indicators of landscape connectivity; in particular, bobcat habitat selection, movement, and mortality may be affected by roads. We analyzed movement patterns of 52 bobcats in southern California in three study sites and investigated: (1) how bobcats responded to two types of roads within their home ranges; (2) how they placed their home ranges with respect to roads within the study area; and (3) whether male and female bobcats differed in their behavioral responses to roads. Within home ranges, primary and secondary roads did not influence movements, but bobcats more frequently crossed secondary roads when road densities were higher within their home ranges, thus increasing mortality risk. However, road densities within each study site were several times higher than road densities within home ranges, suggesting bobcats selected against roaded areas in home-range placement. Male home ranges bordering roads were smaller than home ranges for other males, but male home ranges containing roads were larger than those without roads. Male bobcats also were more likely to cross roads than females, potentially reflecting larger male home range sizes. Our results suggest roads have important impacts on urban bobcats, with stronger effects on males than females, and continued efforts to mitigate the effects of roads on carnivores and other fragmentation-sensitive species would help promote connectivity conservation in urban systems.

Anticoagulant rodenticides in urban bobcats: exposure, risk factors and potential effects based on a 16-year study

USGS Publications Warehouse

Serieys, Laurel E.K.; Armenta, Tiffany C.; Moriarty, Joanne G.; Boydston, Erin E.; Lyren, Lisa M.; Poppenga, Robert H.; Crooks, Kevin R.; Wayne, Robert K.; Riley, Seth P. D.

2015-01-01

Anticoagulant rodenticides (ARs) are increasingly recognized as a threat to nontarget wildlife. High exposure to ARs has been documented globally in nontarget predatory species and linked to the high prevalence of an ectoparasitic disease, notoedric mange. In southern California, mange associated with AR exposure has been the proximate cause of a bobcat (Lynx rufus) population decline. We measured AR exposure in bobcats from two areas in southern California, examining seasonal, demographic and spatial risk factors across landscapes including natural and urbanized areas. The long-term study included bobcats sampled over a 16-year period (1997–2012) and a wide geographic area. We sampled blood (N = 206) and liver (N = 172) to examine exposure ante- and post-mortem. We detected high exposure prevalence (89 %, liver; 39 %, blood) and for individuals with paired liver and blood data (N = 64), 92 % were exposed. Moreover, the animals with the most complete sampling were exposed most frequently to three or more compounds. Toxicant exposure was associated with commercial, residential, and agricultural development. Bobcats of both sexes and age classes were found to be at high risk of exposure, and we documented fetal transfer of multiple ARs. We found a strong association between certain levels of exposure (ppm), and between multiple AR exposure events, and notoedric mange. AR exposure was prevalent throughout both regions sampled and throughout the 16-year time period in the long-term study. ARs pose a substantial threat to bobcats, and likely other mammalian and avian predators, living at the urban-wildland interface.

Automatic Road Sign Inventory Using Mobile Mapping Systems

NASA Astrophysics Data System (ADS)

Soilán, M.; Riveiro, B.; Martínez-Sánchez, J.; Arias, P.

2016-06-01

The periodic inspection of certain infrastructure features plays a key role for road network safety and preservation, and for developing optimal maintenance planning that minimize the life-cycle cost of the inspected features. Mobile Mapping Systems (MMS) use laser scanner technology in order to collect dense and precise three-dimensional point clouds that gather both geometric and radiometric information of the road network. Furthermore, time-stamped RGB imagery that is synchronized with the MMS trajectory is also available. In this paper a methodology for the automatic detection and classification of road signs from point cloud and imagery data provided by a LYNX Mobile Mapper System is presented. First, road signs are detected in the point cloud. Subsequently, the inventory is enriched with geometrical and contextual data such as orientation or distance to the trajectory. Finally, semantic content is given to the detected road signs. As point cloud resolution is insufficient, RGB imagery is used projecting the 3D points in the corresponding images and analysing the RGB data within the bounding box defined by the projected points. The methodology was tested in urban and road environments in Spain, obtaining global recall results greater than 95%, and F-score greater than 90%. In this way, inventory data is obtained in a fast, reliable manner, and it can be applied to improve the maintenance planning of the road network, or to feed a Spatial Information System (SIS), thus, road sign information can be available to be used in a Smart City context.

Powering of Hα Filaments by Cosmic Rays

NASA Astrophysics Data System (ADS)

Ruszkowski, Mateusz; Yang, H.-Y. Karen; Reynolds, Christopher S.

2018-05-01

Cluster cool cores possess networks of line-emitting filaments. These filaments are thought to originate via uplift of cold gas from cluster centers by buoyant active galactic nuclei (AGNs) bubbles, or via local thermal instability in the hot intracluster medium (ICM). Therefore, the filaments are either the signatures of AGN feedback or feeding of supermassive black holes. Despite being characterized by very short cooling times, the filaments are significant Hα emitters, which suggests that some process continuously powers these structures. Many cool cores host diffuse radio mini halos and AGN injecting radio plasma, suggesting that cosmic rays (CRs) and magnetic fields are present in the ICM. We argue that the excitation of Alfvén waves by CR streaming, and the replenishment of CR energy via accretion onto the filaments of high-plasma-β ICM characterized by low CR pressure support, can provide the adequate amount of heating to power and sustain the emission from these filaments. This mechanism does not require the CRs to penetrate the filaments, even if the filaments are magnetically isolated from the ambient ICM, and it may operate irrespectively of whether the filaments are dredged up from the center or form in situ in the ICM. This picture is qualitatively consistent with non-thermal line ratios seen in the cold filaments. Future X-ray observations of the iron line complex with XARM, Lynx, or Athena could help to test this model by providing constraints on the amount of CRs in the hot plasma that is cooling and accreting onto the filaments.

Carnivore distributions across chaparral habitats exposed to wildfire and rural housing in southern California

USGS Publications Warehouse

Schuette, P.A.; Diffendorfer, J.E.; Deutschman, D.H.; Tremor, S.; Spencer, W.

2014-01-01

Chaparral and coastal sage scrub habitats in southern California support biologically diverse plant and animal communities. However, native plant and animal species within these shrubland systems are increasingly exposed to human-caused wildfires and an expansion of the human–wildland interface. Few data exist to evaluate the effects of fire and anthropogenic pressures on plant and animal communities found in these environments. This is particularly true for carnivore communities. To address this knowledge gap, we collected detection–non-detection data with motion-sensor cameras and track plots to measure carnivore occupancy patterns following a large, human-caused wildfire (1134 km2) in eastern San Diego County, California, USA, in 2003. Our focal species set included coyote (Canis latrans), gray fox (Urocyon cinereoargenteus), bobcat (Lynx rufus) and striped skunk (Mephitis mephitis). We evaluated the influence on species occupancies of the burned environment (burn edge, burn interior and unburned areas), proximity of rural homes, distance to riparian area and elevation. Gray fox occupancies were the highest overall, followed by striped skunk, coyote and bobcat. The three species considered as habitat and foraging generalists (gray fox, coyote, striped skunk) were common in all conditions. Occupancy patterns were consistent through time for all species except coyote, whose occupancies increased through time. In addition, environmental and anthropogenic variables had weak effects on all four species, and these responses were species-specific. Our results helped to describe a carnivore community exposed to frequent fire and rural human residences, and provide baseline data to inform fire management policy and wildlife management strategies in similar fire-prone ecosystems.

Frequent transmission of immunodeficiency viruses among bobcats and pumas

USGS Publications Warehouse

Franklin, S.P.; Troyer, J.L.; TerWee, J.A.; Lyren, L.M.; Boyce, W.M.; Riley, S.P.D.; Roelke, M.E.; Crooks, K.R.; VandeWoude, S.

2007-01-01

With the exception of human immunodeficiency virus (HIV), which emerged in humans after cross-species transmissions of simian immunodeficiency viruses from nonhuman primates, immunodeficiency viruses of the family Lentiviridae represent species-specific viruses that rarely cross species barriers to infect new hosts. Among the Felidae, numerous immunodeficiency-like lentiviruses have been documented, but only a few cross-species transmissions have been recorded, and these have not been perpetuated in the recipient species. Lentivirus seroprevalence was determined for 79 bobcats (Lynx rufus) and 31 pumas (Puma concolor) from well-defined populations in Southern California. Partial genomic sequences were subsequently obtained from 18 and 12 seropositive bobcats and pumas, respectively. Genotypes were analyzed for phylogenic relatedness and genotypic composition among the study set and archived feline lentivirus sequences. This investigation of feline immunodeficiency virus infection in bobcats and pumas of Southern California provides evidence that cross-species infection has occurred frequently among these animals. The data suggest that transmission has occurred in multiple locations and are most consistent with the spread of the virus from bobcats to pumas. Although the ultimate causes remain unknown, these transmission events may occur as a result of puma predation on bobcats, a situation similar to that which fostered transmission of HIV to humans, and likely represent the emergence of a lentivirus with relaxed barriers to cross-species transmission. This unusual observation provides a valuable opportunity to evaluate the ecological, behavioral, and molecular conditions that favor repeated transmissions and persistence of lentivirus between species. Copyright ?? 2007, American Society for Microbiology. All Rights Reserved.

Aspects of the physiological ecology of dinitrogen fixation in terrestrial Nostoc sp

DOE Office of Scientific and Technical Information (OSTI.GOV)

DuBois, J.D.

1983-01-01

Biological dinitrogen fixation was measured in the Elizabeth's Prairie section of the Lynx Prairie Preserve, Adams County, Ohio using the acetylene-reduction technique. Cyanobacteria (principally Nostoc sp.) contributed almost all of the biologically fixed N at the site until late June, at which time heterotrophic diazotrophs became the dominant dinitrogen fixers. These changes in activity were attributable to fluctuations in Nostoc sp. colony cover, temperature, and soil water potential. Extrapolation of the data, showed Nostoc sp. and heterotrophic diazotrophs contributing 4.60 +/- 1.17 Kg N/ha/yr and 3.19 +/- 1.18 Kg N/ha/yr, respectively. The rate of total dinitrogen fixation for the site,more » 8.20 +/- 2.55 Kg N/ha/yr, is among the highest reported for temperate grassland ecosystems. Laboratory experiments were conducted to characterize 1) the in vivo freeze recovery physiology of nitrogenase activity and 2) polyphosphate bodies and acid phosphatase activity during dark (energy stress) periods. Photosynthetic conditions were necessary for maximum recovery of nitrogenase activity. Though damage may occur to nitrogenase, some of the enzyme is capable of surviving a freeze-thaw period in vivo. However, complete recovery of nitrogenase activity may entail de novo synthesis of nitrogenase. The rate of acid phosphatase activity was measured using p-nitrophenyl phosphate as an exogenous substrate. Cells incubated in the light for 72 h showed acid phosphatase activity localized around the perimeter of the polyphosphate bodies. When cells were incubated in the dark, acid phosphatase activity occurred throughout the polyphosphate body matrix.« less

Fragmentation of contaminant and endogenous DNA in ancient samples determined by shotgun sequencing; prospects for human palaeogenomics.

PubMed

García-Garcerà, Marc; Gigli, Elena; Sanchez-Quinto, Federico; Ramirez, Oscar; Calafell, Francesc; Civit, Sergi; Lalueza-Fox, Carles

2011-01-01

Despite the successful retrieval of genomes from past remains, the prospects for human palaeogenomics remain unclear because of the difficulty of distinguishing contaminant from endogenous DNA sequences. Previous sequence data generated on high-throughput sequencing platforms indicate that fragmentation of ancient DNA sequences is a characteristic trait primarily arising due to depurination processes that create abasic sites leading to DNA breaks. METHODOLOGY/PRINCIPALS FINDINGS: To investigate whether this pattern is present in ancient remains from a temperate environment, we have 454-FLX pyrosequenced different samples dated between 5,500 and 49,000 years ago: a bone from an extinct goat (Myotragus balearicus) that was treated with a depurinating agent (bleach), an Iberian lynx bone not subjected to any treatment, a human Neolithic sample from Barcelona (Spain), and a Neandertal sample from the El Sidrón site (Asturias, Spain). The efficiency of retrieval of endogenous sequences is below 1% in all cases. We have used the non-human samples to identify human sequences (0.35 and 1.4%, respectively), that we positively know are contaminants. We observed that bleach treatment appears to create a depurination-associated fragmentation pattern in resulting contaminant sequences that is indistinguishable from previously described endogenous sequences. Furthermore, the nucleotide composition pattern observed in 5' and 3' ends of contaminant sequences is much more complex than the flat pattern previously described in some Neandertal contaminants. Although much research on samples with known contaminant histories is needed, our results suggest that endogenous and contaminant sequences cannot be distinguished by the fragmentation pattern alone.

Transvaginal retropubic sling systems: efficacy and patient acceptability

PubMed Central

Moldovan, Christina P; Marinone, Michelle E; Staack, Andrea

2015-01-01

Stress urinary incontinence is a common, disabling, and costly medical problem that affects approximately 50% of women with urinary incontinence. Suburethral retropubic slings have been developed as a minimally invasive and effective surgical option, and they have been used as a first-line treatment for stress urinary incontinence since 1995. However, complications including vaginal extrusion, erosion, pain, bleeding, infections, lower urinary tract symptoms, urinary retention, and incontinence have been reported with use of the slings. Several companies manufacture sling kits, and the sling kits vary with regard to the composition of the mesh and introducer needle. The aim of this review was to determine which sling kit was most effective for patients, had minimal reported side effects, and was best accepted by patients and surgeons. In a review of the literature, it was found that a total of 38 studies were published between 1995 and 2014 that reported on eight tension-free retropubic sling kits: SPARC, RetroArc, Align, Advantage, Lynx, Desara, Supris, and Gynecare TVT. The Gynecare TVT was the most cited sling kit; the second most cited was the SPARC. This review provides a summary of the studies that have examined positive and negative outcomes of the retropubic tension-free suburethral sling procedure using various sling kits. Overall, the results of the literature review indicated that data from comparisons of the available sling kits are insufficient to make an evidenced-based recommendation. Therefore, the decision regarding which sling kit is appropriate to use in surgery is determined by the medical provider’s preference, training, and past experience, and not by the patient. PMID:25733928

Postsacral vertebral morphology in relation to tail length among primates and other mammals.

PubMed

Russo, Gabrielle A

2015-02-01

Tail reduction/loss independently evolved in a number of mammalian lineages, including hominoid primates. One prerequisite to appropriately contextualizing its occurrence and understanding its significance is the ability to track evolutionary changes in tail length throughout the fossil record. However, to date, the bony correlates of tail length variation among living taxa have not been comprehensively examined. This study quantifies postsacral vertebral morphology among living primates and other mammals known to differ in relative tail length (RTL). Linear and angular measurements with known biomechanical significance were collected on the first, mid-, and transition proximal postsacral vertebrae, and their relationship with RTL was assessed using phylogenetic generalized least-squares regression methods. Compared to shorter-tailed primates, longer-tailed primates possess a greater number of postsacral vertebral features associated with increased proximal tail flexibility (e.g., craniocaudally longer vertebral bodies), increased intervertebral body joint range of motion (e.g., more circularly shaped cranial articular surfaces), and increased leverage of tail musculature (e.g., longer spinous processes). These observations are corroborated by the comparative mammalian sample, which shows that distantly related short-tailed (e.g., Phascolarctos, Lynx) and long-tailed (e.g., Dendrolagus, Acinonyx) nonprimate mammals morphologically converge with short-tailed (e.g., Macaca tonkeana) and long-tailed (e.g., Macaca fascicularis) primates, respectively. Multivariate models demonstrate that the variables examined account for 70% (all mammals) to 94% (only primates) of the variance in RTL. Results of this study may be used to infer the tail lengths of extinct primates and other mammals, thereby improving our understanding about the evolution of tail reduction/loss. © 2014 Wiley Periodicals, Inc.

Vif of feline immunodeficiency virus from domestic cats protects against APOBEC3 restriction factors from many felids.

PubMed

Zielonka, Jörg; Marino, Daniela; Hofmann, Henning; Yuhki, Naoya; Löchelt, Martin; Münk, Carsten

2010-07-01

To get more insight into the role of APOBEC3 (A3) cytidine deaminases in the species-specific restriction of feline immunodeficiency virus (FIV) of the domestic cat, we tested the A3 proteins present in big cats (puma, lion, tiger, and lynx). These A3 proteins were analyzed for expression and sensitivity to the Vif protein of FIV. While A3Z3s and A3Z2-Z3s inhibited Deltavif FIV, felid A3Z2s did not show any antiviral activity against Deltavif FIV or wild-type (wt) FIV. All felid A3Z3s and A3Z2-Z3s were sensitive to Vif of the domestic cat FIV. Vif also induced depletion of felid A3Z2s. Tiger A3s showed a moderate degree of resistance against the Vif-mediated counter defense. These findings may imply that the A3 restriction system does not play a major role to prevent domestic cat FIV transmission to other Felidae. In contrast to the sensitive felid A3s, many nonfelid A3s actively restricted wt FIV replication. To test whether Vif(FIV) can protect also the distantly related human immunodeficiency virus type 1 (HIV-1), a chimeric HIV-1.Vif(FIV) was constructed. This HIV-1.Vif(FIV) was replication competent in nonpermissive feline cells expressing human CD4/CCR5 that did not support the replication of wt HIV-1. We conclude that the replication of HIV-1 in some feline cells is inhibited only by feline A3 restriction factors and the absence of the appropriate receptor or coreceptor.

Vif of Feline Immunodeficiency Virus from Domestic Cats Protects against APOBEC3 Restriction Factors from Many Felids▿

PubMed Central

Zielonka, Jörg; Marino, Daniela; Hofmann, Henning; Yuhki, Naoya; Löchelt, Martin; Münk, Carsten

2010-01-01

To get more insight into the role of APOBEC3 (A3) cytidine deaminases in the species-specific restriction of feline immunodeficiency virus (FIV) of the domestic cat, we tested the A3 proteins present in big cats (puma, lion, tiger, and lynx). These A3 proteins were analyzed for expression and sensitivity to the Vif protein of FIV. While A3Z3s and A3Z2-Z3s inhibited Δvif FIV, felid A3Z2s did not show any antiviral activity against Δvif FIV or wild-type (wt) FIV. All felid A3Z3s and A3Z2-Z3s were sensitive to Vif of the domestic cat FIV. Vif also induced depletion of felid A3Z2s. Tiger A3s showed a moderate degree of resistance against the Vif-mediated counter defense. These findings may imply that the A3 restriction system does not play a major role to prevent domestic cat FIV transmission to other Felidae. In contrast to the sensitive felid A3s, many nonfelid A3s actively restricted wt FIV replication. To test whether VifFIV can protect also the distantly related human immunodeficiency virus type 1 (HIV-1), a chimeric HIV-1.VifFIV was constructed. This HIV-1.VifFIV was replication competent in nonpermissive feline cells expressing human CD4/CCR5 that did not support the replication of wt HIV-1. We conclude that the replication of HIV-1 in some feline cells is inhibited only by feline A3 restriction factors and the absence of the appropriate receptor or coreceptor. PMID:20444897

Ancient papillomavirus-host co-speciation in Felidae

PubMed Central

Rector, Annabel; Lemey, Philippe; Tachezy, Ruth; Mostmans, Sara; Ghim, Shin-Je; Van Doorslaer, Koenraad; Roelke, Melody; Bush, Mitchell; Montali, Richard J; Joslin, Janis; Burk, Robert D; Jenson, Alfred B; Sundberg, John P; Shapiro, Beth; Van Ranst, Marc

2007-01-01

Background Estimating evolutionary rates for slowly evolving viruses such as papillomaviruses (PVs) is not possible using fossil calibrations directly or sequences sampled over a time-scale of decades. An ability to correlate their divergence with a host species, however, can provide a means to estimate evolutionary rates for these viruses accurately. To determine whether such an approach is feasible, we sequenced complete feline PV genomes, previously available only for the domestic cat (Felis domesticus, FdPV1), from four additional, globally distributed feline species: Lynx rufus PV type 1, Puma concolor PV type 1, Panthera leo persica PV type 1, and Uncia uncia PV type 1. Results The feline PVs all belong to the Lambdapapillomavirus genus, and contain an unusual second noncoding region between the early and late protein region, which is only present in members of this genus. Our maximum likelihood and Bayesian phylogenetic analyses demonstrate that the evolutionary relationships between feline PVs perfectly mirror those of their feline hosts, despite a complex and dynamic phylogeographic history. By applying host species divergence times, we provide the first precise estimates for the rate of evolution for each PV gene, with an overall evolutionary rate of 1.95 × 10-8 (95% confidence interval 1.32 × 10-8 to 2.47 × 10-8) nucleotide substitutions per site per year for the viral coding genome. Conclusion Our work provides evidence for long-term virus-host co-speciation of feline PVs, indicating that viral diversity in slowly evolving viruses can be used to investigate host species evolution. These findings, however, should not be extrapolated to other viral lineages without prior confirmation of virus-host co-divergence. PMID:17430578

Back pain in aircrew--an initial survey.

PubMed

Sheard, S C; Pethybridge, R J; Wright, J M; McMillan, G H

1996-05-01

In the early 1990's staff at a Royal Naval Air Station formed the view that pilots and observers of the Navy Lynx helicopter fleet appeared to have a higher incidence of back pain, to be seeking medical assistance more frequently and to be spending more time medically "unfit to fly" when compared to their counterparts in other helicopters. To quantify the incidence of low back pain in helicopter aircrew by use of a questionnaire. A questionnaire was used to establish the prevalence and nature of back pain in Naval aircrew (161) compared to a control group of randomly selected non-flying military personnel (310). Results show that aircrew (82%) experience significantly more back pain than controls (52%) (p < 0.01) though the nature of pain was similar in both groups. Significantly more aircrew (73%) than controls (49%) (p < 0.01) reported a previous history of back pain and report pain in shoulders (19%), midback (42%), lower back (72%) and across the buttocks (12%). Ergonomic factors were thought to be causative. Of aircrew surveyed, 11 (8%) had been issued with personal lumbar supports which resulted in major subjective improvements in flight-related symptoms. Helicopter aircrew have a higher incidence of back pain. Crew station design was identified as a major contributor to the prevalence of back pain while personal supports reduced the levels of discomfort. While these findings are not new, no significant steps have been taken to redesign the crew station. It is recommended that personal supports are provided to all aircrew and that a more detailed study of crew station ergonomics is indicated following a more comprehensive study of prevalence of back pain in Royal Navy aircrew.

Isolation of Bartonella henselae and Two New Bartonella Subspecies, Bartonella koehlerae Subspecies boulouisii subsp. nov. and Bartonella koehlerae Subspecies bothieri subsp. nov. from Free-Ranging Californian Mountain Lions and Bobcats

PubMed Central

Chomel, Bruno B.; Molia, Sophie; Kasten, Rickie W.; Borgo, Gina M.; Stuckey, Matthew J.; Maruyama, Soichi; Chang, Chao-chin; Haddad, Nadia; Koehler, Jane E.

2016-01-01

Domestic cats are the natural reservoir of Bartonella henselae, B. clarridgeiae and B. koehlerae. To determine the role of wild felids in the epidemiology of Bartonella infections, blood was collected from 14 free-ranging California mountain lions (Puma concolor) and 19 bobcats (Lynx rufus). Bartonella spp. were isolated from four (29%) mountain lions and seven (37%) bobcats. These isolates were characterized using growth characteristics, biochemical reactions, molecular techniques, including PCR-RFLP of selected genes or interspacer region, pulsed-field gel electrophoresis (PFGE), partial sequencing of several genes, and DNA-DNA hybridization. Two isolates were identical to B. henselae genotype II. All other isolates were distinguished from B. henselae and B. koehlerae by PCR-RFLP of the gltA gene using endonucleases HhaI, TaqI and AciI, with the latter two discriminating between the mountain lion and the bobcat isolates. These two novel isolates displayed specific PFGE profiles distinct from B. henselae, B. koehlerae and B. clarridgeiae. Sequences of amplified gene fragments from the three mountain lion and six bobcat isolates were closely related to, but distinct from, B. henselae and B. koehlerae. Finally, DNA-DNA hybridization studies demonstrated that the mountain lion and bobcat strains are most closely related to B. koehlerae. We propose naming the mountain lion isolates B. koehlerae subsp. boulouisii subsp. nov. (type strain: L-42-94), and the bobcat isolates B. koehlerae subsp. bothieri subsp. nov. (type strain: L-17-96), and to emend B. koehlerae as B. koehlerae subsp. koehlerae. The mode of transmission and the zoonotic potential of these new Bartonella subspecies remain to be determined. PMID:26981874

Nest fate and productivity of American Oystercatchers, Cumberland Island National Seashore, Georgia

USGS Publications Warehouse

Sabine, J.B.; Schweitzer, Sara H.; Meyers, J.M.

2006-01-01

The American Oystercatcher (Haematopus palliatus) is listed as a species of high priority by the U.S. Shorebird Conservation Plan and is state-listed as rare in Georgia; however, biologists have not focused on identifying the causes of egg and hatchling losses. In 2003 and 2004, continuous video monitoring was used to document reproductive success of American Oystercatchers and identify causes of nest failure at Cumberland Island National Seashore, Georgia. The modified Mayfield method and program CONTRAST were used to determine and compare survival of eggs and nestlings. Eleven pairs made 32 nest attempts during two seasons. Nine attempts were successful, fledging 15 chicks. Daily survival of clutches was 0.973 (95% CI = 0.960-0.987) for 2003, 0.985 (95% CI = 0.974-0.995) for 2004, and 0.979 (95% CI = 0.970-0.987) for combined years. Daily survival was greater on the North End, than on the South End of the island (X21 = 7.211, P = 0.007). Eighteen of 20 nest failures during the egg stage and one of eight chick losses were documented. Egg predators included raccoon (Procyon lotor, N = 9), bobcat (Lynx rufus, N = 3), and American Crow (Corvus brachyrhynchos, N = 1). A ghost crab (Ocypode quadata) preyed on one chick. Other causes of nest failure were tidal overwash (N = 1), horse trampling (N = 1), abandonment (N = 2), and human destruction (N = 1). The North End of the island has one of the highest reproductive rates reported along the Atlantic coast. Predator control may be an effective means of increasing reproductive success on the South End of the island.

Unusual void galaxy DDO 68: implications of the HST-resolved photometry

NASA Astrophysics Data System (ADS)

Makarov, D. I.; Makarova, L. N.; Pustilnik, S. A.; Borisov, S. B.

2017-04-01

DDO 68 (UGC 5340) is an unusual dwarf galaxy with extremely low gas metallicity [12 + log (O/H) = 7.14] residing in the nearby Lynx-Cancer void. Despite its apparent isolation, it shows both optical and H I morphological evidence for strong tidal disturbance. Here, we study the resolved stellar populations of DDO 68 using deep images from the HST archive. We determined a distance of 12.75 ± 0.41 Mpc using the tip of the red giant branch (TRGB). The star formation history reconstruction reveals that about 60 per cent of stars formed during the initial period of star formation, about 12-14 Gyr ago. During the next 10 Gyr, DDO 68 was in the quenched state, with only slight traces of star formation. The onset of the most recent burst of star formation occurred about 300 Myr ago. We find that young populations with ages of several million to a few hundred million years are widely spread across various parts of DDO 68, indicating an intense star formation episode with a high mean rate of 0.15 M⊙ yr-1. A major fraction of the visible stars in the whole system (˜80 per cent) have low metallicities: Z = Z⊙/50-Z⊙/20. The properties of the northern periphery of DDO 68 can be explained by an ongoing burst of star formation induced by the minor merger of a small, gas-rich, extremely metal-poor galaxy with a more typical dwarf galaxy. The current TRGB-based distance of DDO 68 implies a total negative peculiar velocity of ≈500 km s-1.

Loss-of-function of neuroplasticity-related genes confers risk for human neurodevelopmental disorders.

PubMed

Smith, Milo R; Glicksberg, Benjamin S; Li, Li; Chen, Rong; Morishita, Hirofumi; Dudley, Joel T

2018-01-01

High and increasing prevalence of neurodevelopmental disorders place enormous personal and economic burdens on society. Given the growing realization that the roots of neurodevelopmental disorders often lie in early childhood, there is an urgent need to identify childhood risk factors. Neurodevelopment is marked by periods of heightened experience-dependent neuroplasticity wherein neural circuitry is optimized by the environment. If these critical periods are disrupted, development of normal brain function can be permanently altered, leading to neurodevelopmental disorders. Here, we aim to systematically identify human variants in neuroplasticity-related genes that confer risk for neurodevelopmental disorders. Historically, this knowledge has been limited by a lack of techniques to identify genes related to neurodevelopmental plasticity in a high-throughput manner and a lack of methods to systematically identify mutations in these genes that confer risk for neurodevelopmental disorders. Using an integrative genomics approach, we determined loss-of-function (LOF) variants in putative plasticity genes, identified from transcriptional profiles of brain from mice with elevated plasticity, that were associated with neurodevelopmental disorders. From five shared differentially expressed genes found in two mouse models of juvenile-like elevated plasticity (juvenile wild-type or adult Lynx1-/- relative to adult wild-type) that were also genotyped in the Mount Sinai BioMe Biobank we identified multiple associations between LOF genes and increased risk for neurodevelopmental disorders across 10,510 patients linked to the Mount Sinai Electronic Medical Records (EMR), including epilepsy and schizophrenia. This work demonstrates a novel approach to identify neurodevelopmental risk genes and points toward a promising avenue to discover new drug targets to address the unmet therapeutic needs of neurodevelopmental disease.

GENETIC CHARACTERIZATION OF CANINE PARVOVIRUS IN SYMPATRIC FREE-RANGING WILD CARNIVORES IN PORTUGAL.

PubMed

Miranda, Carla; Santos, Nuno; Parrish, Colin; Thompson, Gertrude

2017-10-01

Since its emergence in the 1970s, canine parvovirus (CPV) has been reported in domestic and nondomestic carnivores worldwide with severe implications on their health and survival. Here, we aim to better understand CPV circulation in multihost-pathogens systems by characterizing CPV DNA or viruses in 227 free-ranging wild carnivores of 12 species from Portugal. Collected samples during 1995-2011 were analyzed by PCR and sequence analysis. The canine parvovirus DNA was detected in 4 (2%) animals of two species, namely in wolves (Canis lupus; 3/63, 5%, 95% confidence interval=1.6-3.15) and in a stone marten (Martes foina; 1/36, 3%, 95% confidence interval=0.5-14.2). Viruses in two wolves had VP2 residue 426 as aspartic acid (so-called CPV-2b) and the third had VP2 residue 426 as asparagine (CPV-2a), while the virus in the stone marten uniquely had VP2 residue 426 as glutamic acid (CPV-2c). The comparative analysis of the full-length VP2 gene of our isolates showed other nonsynonymous mutations. The phylogenetic analysis demonstrated that the sequences from wolves clustered together, showing a close relationship with European domestic dogs (Canis lupus familiaris) and wolf strains while the viral sequence from the stone marten grouped with other viruses contained the glutamic acid VP2 426 along with raccoon (Procyon lotor), bobcat (Lynx rufus), and domestic dog strains. This study confirmed that wild carnivores in Portugal are infected by CPV variants, strongly suggesting viral transmission between the wild and domestic populations and suggesting a need for a better understanding of the epidemiology of the disease and its management in wild populations.

A MOLECULAR PHYLOGENY OF THE FELIDAE: IMMUNOLOGICAL DISTANCE.

PubMed

Collier, Glen E; O'Brien, Stephen J

1985-05-01

The phylogenetic distances between 34 of the 37 extant species of Felidae were estimated using albumin immunological distances (AID). Albumins from ten cat species were used to prepare antisera in rabbits. A consensus phylogeny was constructed from a matrix of reciprocal AID measurements using four distinct phylogenetic algorithms. A series of one-way measurements using the ten index antisera and those 24 species for which albumins were available (but antisera were not), permitted addition of these "species' limbs" to the previously derived phylogenetic trees. The major conclusions of the derived topology were: 1) the earliest branch of the feline radiation occurred approximately 12 million years B.P. and led to the small South American cats (ocelot, margay, Geoffroy's cat, etc.); 2) the second branching occurred 8-10 million years B.P. and included the close relatives of the domestic cat (wildcats, jungle cat, sand cat, and black-footed cat) plus Pallas's cat; 3) the third lineage which began to radiate 4-6 million years B.P. was the pantherine lineage, which included several early branches (cheetah, serval, clouded leopard, golden cats, and puma) and a very recent (2 million years B.P.) split between the lynxes and the modern great cats (Panthera). The topology of the Felidae derived from albumin immunological distance is highly consistent with the karyological disposition of these species, as well as with the fossil record of this family. Because of the recent divergence of this group, the presented data set and the derived topology contain certain unresolved phylogenetic relationships which are so indicated. © 1985 The Society for the Study of Evolution.

Real-time operating system timing jitter and its impact on motor control

NASA Astrophysics Data System (ADS)

Proctor, Frederick M.; Shackleford, William P.

2001-12-01

General-purpose microprocessors are increasingly being used for control applications due to their widespread availability and software support for non-control functions like networking and operator interfaces. Two classes of real-time operating systems (RTOS) exist for these systems. The traditional RTOS serves as the sole operating system, and provides all OS services. Examples include ETS, LynxOS, QNX, Windows CE and VxWorks. RTOS extensions add real-time scheduling capabilities to non-real-time OSes, and provide minimal services needed for the time-critical portions of an application. Examples include RTAI and RTL for Linux, and HyperKernel, OnTime and RTX for Windows NT. Timing jitter is an issue in these systems, due to hardware effects such as bus locking, caches and pipelines, and software effects from mutual exclusion resource locks, non-preemtible critical sections, disabled interrupts, and multiple code paths in the scheduler. Jitter is typically on the order of a microsecond to a few tens of microseconds for hard real-time operating systems, and ranges from milliseconds to seconds in the worst case for soft real-time operating systems. The question of its significance on the performance of a controller arises. Naturally, the smaller the scheduling period required for a control task, the more significant is the impact of timing jitter. Aside from this intuitive relationship is the greater significance of timing on open-loop control, such as for stepper motors, than for closed-loop control, such as for servo motors. Techniques for measuring timing jitter are discussed, and comparisons between various platforms are presented. Techniques to reduce jitter or mitigate its effects are presented. The impact of jitter on stepper motor control is analyzed.

An Approach Toward Understanding Wildlife-Vehicle Collisions

NASA Astrophysics Data System (ADS)

Litvaitis, John A.; Tash, Jeffrey P.

2008-10-01

Among the most conspicuous environmental effects of roads are vehicle-related mortalities of wildlife. Research to understand the factors that contribute to wildlife-vehicle collisions can be partitioned into several major themes, including (i) characteristics associated with roadkill hot spots, (ii) identification of road-density thresholds that limit wildlife populations, and (iii) species-specific models of vehicle collision rates that incorporate information on roads (e.g., proximity, width, and traffic volume) and animal movements. We suggest that collision models offer substantial opportunities to understand the effects of roads on a diverse suite of species. We conducted simulations using collision models and information on Blanding’s turtles ( Emydoidea blandingii), bobcats ( Lynx rufus), and moose ( Alces alces), species endemic to the northeastern United States that are of particular concern relative to collisions with vehicles. Results revealed important species-specific differences, with traffic volume and rate of movement by candidate species having the greatest influence on collision rates. We recommend that future efforts to reduce wildlife-vehicle collisions be more proactive and suggest the following protocol. For species that pose hazards to drivers (e.g., ungulates), identify collision hot spots and implement suitable mitigation to redirect animal movements (e.g., underpasses, fencing, and habitat modification), reduce populations of problematic game species via hunting, or modify driver behavior (e.g., dynamic signage that warns drivers when animals are near roads). Next, identify those species that are likely to experience additive (as opposed to compensatory) mortality from vehicle collisions and rank them according to vulnerability to extirpation. Then combine information on the distribution of at-risk species with information on existing road networks to identify areas where immediate actions are warranted.

A Thermal Infrared Cloud Mapper

NASA Astrophysics Data System (ADS)

Mallama, A.; Degnan, J. J.

2001-12-01

A thermal infrared imager for mapping the changing cloud cover over a ground based observing site has been developed. There are two main components to our instrument. One is a commercially made uncooled 10 micron thermal infrared detector that outputs a 120x120 pixel thermogram. The other is a convex electroplated reflector, which is situated beneath the detector and in its field of view. The resulting image covers the sky from zenith down to about 10 degrees elevation. The self-reflection of the camera and supporting vanes is removed by interpolation. Atmospheric transparency is distinguished by the difference between the sky temperature and the ambient air temperature. Clear sky is indicated by pixels having a difference of about 20 degrees C or more. The qualitative results 'clear, haze and cloud' have proven to be very reliable during two years of development and testing. Quantitative information, such as the extinction coefficient, is also available though it is not exact. The uncertainty is probably due to variability of the lapse rate under different atmospheric conditions. Software has been written for PC/DOS and VME/LynxOS (similar to Linux) systems in the C programming language. Functionality includes serial communication with the detector, analysis of the thermogram, mapping of cloud cover, data display, and file I/O. The main elements of cost in this system were for the thermal infrared detector and for the machining of an 18-inch diameter stainless steel mandrel. The latter is needed to produce an electroplated reflector. We have had good success with the gold and rhodium reflectors that have been generated. The reflectors themselves are relatively inexpensive now that the mandrel is available.

A comparison of food habits and prey preferences of Amur tiger (Panthera tigris altaica Temminck, 1844) at the southwest Primorskii Krai in Russia and Hunchun in China.

PubMed

Gu, Jiayin; Yu, Lan; Hua, Yan; Ning, Yao; Heng, Bao; Qi, Jinzhe; Long, Zexv; Yao, Mingyuan; Huang, Chong; Li, Zhilin; Lang, Jianming; Jiang, Guangshun; Ma, Jianzhang

2018-05-03

A small, isolated Amur tiger population is living at the southwest Primorskii Krai in Russia and Hunchun in China region. Many of them with "dual nationality" cross the border frequently. Formulating effective conservation strategies requires a clear understanding of tiger food requirements in both Russia and China sides, while Russia side already have clear results of it. We used scat analysis combined with data on the abundance of four prey species to estimate Amur tiger diet and prey preferences in Hunchun. We examined 53 tiger samples from 2011-2016 and found that tigers preyed on 12 species (11 species in winter), four of which were domestic animals with 33.58% biomass contribution, and got the first record that Amur tiger eat lynx in this area. Tigers showed a strong preference for wild boar (Jacobs index: +0.849), which were also the most frequently consumed prey, and a strong avoidance to roe deer (Jacobs index: -0.693). On the Russian side, domestic animals (just dog) were rarely found in tiger scat, and tiger did not show strong avoidance to roe deer, but to sika deer. We also found red deer footprints during winter surveys and that tigers ate red deer on the Chinese side, while there was no record of red deer on the Russian side. Reducing or eliminating human disturbance, such as grazing, is essential to recovering tiger prey and habitat in this area and the Sino-Russia joint ungulate annual survey is indispensable for prey estimates of this small, isolated Amur tiger population. This article is protected by copyright. All rights reserved. This article is protected by copyright. All rights reserved.

The first decade of commercial space tourism

NASA Astrophysics Data System (ADS)

Chang, Yi-Wei

2015-03-01

In order to provide a basis for assessing the future prospects and challenges of space tourism, this paper begins with a brief overview of the history of space tourism. This is followed by a discussion on market demand and current developments in the academic community, as well as the status of traffic tools, regulations and legalization. In market demand, although studies conducted in 1990s assumed the possibility of 500,000 per year in space tourists and several billion USD of annual revenue, in 2008 a relatively modest 13,000 per year was predicted. At this time traffic transport tools including the Soyuz system, CST-100, DragonRider and International Space Station (ISS) can only provide a few tens in spare seats for space tourists per year compared to the projected 20,000 plus seat capacity of the Lynx, Dream Chaser and SpaceShipTwo (SS2) fleets, which have the potential to conduct their first full suborbital test flight and first commercial flight within the coming decade. Added to this, the US government has only a regulatory regime that supports privately owned suborbital space tourism (SST) and no government funded orbital space tourism (OST). These evidences reveal a very high and advantageous potential for SST to form a space tourism industry in the coming decade, whereas the possibility of OST is relatively low. However, even though the prosperity of SST in the coming years is expectable, its maturity, reliability and safety still need to win the confidence of the general public. For examples, the announcement of changes to fuel used in the SS2 rocket engine in May 2014 and the crash of one SS2 while performing test flight on 31 October 2014 indicated the need for much careful preparation, as any accident in commercial operation could seriously damage or even kill its future prospects.

Clinical Sarcocystis neurona, Sarcocystis canis, Toxoplasma gondii, and Neospora caninum infections in dogs.

PubMed

Dubey, J P; Chapman, Jennifer L; Rosenthal, Benjamin M; Mense, M; Schueler, Ronald L

2006-04-15

Sarcocystis neurona, Sarcocystis canis, Toxoplasma gondii, and Neospora caninum are related apicomplexans that can cause systemic illness in many species of animals, including dogs. We investigated one breeder's 25 Basset Hounds for these infections. In addition, tissues from dogs and other non-canine hosts previously reported as S. canis infections were studied retrospectively. Schizonts resembling those of S. neurona, and recognized by polyclonal rabbit anti-S. neurona antibodies, were found in six of eight retrospective cases, as well as in two additional dogs (one Basset Hound, one Springer Spaniel) not previously reported. S. neurona schizonts were found in several tissues including the central nervous system, lungs, and kidneys. Fatal toxoplasmosis was diagnosed in an adult dog, and neosporosis was diagnosed in an adult and a pup related to the one diagnosed with S. neurona. No serological reactivity to S. neurona antibodies occurred when S. canis-like liver schizonts were retrospectively assayed from two dogs, a dolphin, a sea lion, a horse, a chinchilla, a black or either of two polar bears. Sequencing conserved (18S) and variable (ITS-1) portions of nuclear ribosomal DNA isolated from the schizont-laden liver of a polar bear distinguished it from all previously characterized species of Sarcocystis. We take this genetic signature as provisionally representative of S. canis, an assumption that should be tested with future sequencing of similar liver infections in other mammalian hosts. These findings further extend the uncharacteristically broad intermediate host range for S. neurona, which also causes a neurologic disease in cats, mink, raccoons, skunks, Pacific harbor seals, ponies, zebras, lynxes, and sea otters. Further work is necessary to delineate the causative agent(s) of other cases of canine sarcocystosis, and in particular to specify the attributes of S. canis, which corresponds morphologically to infections reported from wide range of terrestrial

Atypical fatal sarcocystosis associated with Sarcocystis neurona in a White-nosed coati (Nasua narica molaris).

PubMed

Dubey, Jitender P; Trupkiewicz, John G; Verma, Shiv K; Mowery, Joseph D; Adedoyin, Gloria; Georoff, Tim; Grigg, Michael E

2017-11-30

The protozoan parasite Sarcocystis neurona is an important cause of disease in horses (equine protozoal myeloencephalitis, EPM) and marine mammals. Isolated reports of clinical EPM-like disease have been documented in a zebra, raccoon, domestic cat, domestic dog, ferret, skunk, mink, lynx, red panda and fisher. The predominant disease is encephalomyelitis associated with schizonts in neural tissues. Here, we report highly disseminated sarcocystosis, in many tissues of a captive White-nosed coati (Nasua narica molaris). The 14year old, neutered male coati was euthanized due to progressive weakness, lethargy, and inappetence. Schizonts, including free and intracellular merozoites were detected in many cell types, and differed morphologically from S. neurona schizonts in horses. Only a few sarcocysts were seen in skeletal muscle and the myocardium. Immunohistochemically, the protozoa reacted positively to S. neurona but not to Toxoplasma gondii antibodies. Severe inflammtory disease detected in the stomach, intestine, adrenal and thyroid glands, ciliary body of eye, and urinary bladder associated with schizonts in the coati has not been reported earlier in any host with EPM. Although, a few schizonts were found in the brain, encephalitis was minimal and not the cause of clinical signs. Multilocus PCR-DNA sequencing using DNA derived from the coati lung tissue identified an S. neurona infection using the 18S, 28S and ITS-1 markers, and a novel genotype using primer pairs against antigenic surface proteins (SnSAG3, SnSAG4, SnSAG1-5-6) and microsatellite markers (MS, SN7, SN9). Although the genotype was similar to the widely distributed Type VI strain, it possessed a novel allele at SnSAG5, and a different MS combination of repeats at SN7 and SN9. Whether this severe parasitism was related to the host or the parasite needs further investigation. Published by Elsevier B.V.

Revisiting the classics: considering nonconsumptive effects in textbook examples of predator-prey interactions.

PubMed

Peckarsky, Barbara L; Abrams, Peter A; Bolnick, Daniel I; Dill, Lawrence M; Grabowski, Jonathan H; Luttbeg, Barney; Orrock, John L; Peacor, Scott D; Preisser, Evan L; Schmitz, Oswald J; Trussell, Geoffrey C

2008-09-01

Predator effects on prey dynamics are conventionally studied by measuring changes in prey abundance attributed to consumption by predators. We revisit four classic examples of predator-prey systems often cited in textbooks and incorporate subsequent studies of nonconsumptive effects of predators (NCE), defined as changes in prey traits (e.g., behavior, growth, development) measured on an ecological time scale. Our review revealed that NCE were integral to explaining lynx-hare population dynamics in boreal forests, cascading effects of top predators in Wisconsin lakes, and cascading effects of killer whales and sea otters on kelp forests in nearshore marine habitats. The relative roles of consumption and NCE of wolves on moose and consequent indirect effects on plant communities of Isle Royale depended on climate oscillations. Nonconsumptive effects have not been explicitly tested to explain the link between planktonic alewives and the size structure of the zooplankton, nor have they been invoked to attribute keystone predator status in intertidal communities or elsewhere. We argue that both consumption and intimidation contribute to the total effects of keystone predators, and that characteristics of keystone consumers may differ from those of predators having predominantly NCE. Nonconsumptive effects are often considered as an afterthought to explain observations inconsistent with consumption-based theory. Consequently, NCE with the same sign as consumptive effects may be overlooked, even though they can affect the magnitude, rate, or scale of a prey response to predation and can have important management or conservation implications. Nonconsumptive effects may underlie other classic paradigms in ecology, such as delayed density dependence and predator-mediated prey coexistence. Revisiting classic studies enriches our understanding of predator-prey dynamics and provides compelling rationale for ramping up efforts to consider how NCE affect traditional predator

Effectiveness of scat detection dogs for detecting forest carnivores

USGS Publications Warehouse

Long, Robert A.; Donovan, T.M.; MacKay, Paula; Zielinski, William J.; Buzas, Jeffrey S.

2007-01-01

We assessed the detection and accuracy rates of detection dogs trained to locate scats from free-ranging black bears (Ursus americanus), fishers (Martes pennanti), and bobcats (Lynx rufus). During the summers of 2003-2004, 5 detection teams located 1,565 scats (747 putative black bear, 665 putative fisher, and 153 putative bobcat) at 168 survey sites throughout Vermont, USA. Of 347 scats genetically analyzed for species identification, 179 (51.6%) yielded a positive identification, 131 (37.8%) failed to yield DNA information, and 37 (10.7%) yielded DNA but provided no species confirmation. For 70 survey sites where confirmation of a putative target species' scat was not possible, we assessed the probability that ???1 of the scats collected at the site was deposited by the target species (probability of correct identification; P ID). Based on species confirmations or PID values, we detected bears at 57.1% (96) of sites, fishers at 61.3% (103) of sites, and bobcats at 12.5%o (21) of sites. We estimated that the mean probability of detecting the target species (when present) during a single visit to a site was 0.86 for black bears, 0.95 for fishers, and 0.40 for bobcats. The probability of detecting black bears was largely unaffected by site- or visit-specific covariates, but the probability of detecting fishers varied by detection team. We found little or no effect of topographic ruggedness, vegetation density, or local weather (e.g., temp, humidity) on detection probability for fishers or black bears (data were insufficient for bobcat analyses). Detection dogs were highly effective at locating scats from forest carnivores and provided an efficient and accurate method for collecting detection-nondetection data on multiple species.

Seroprevalence of Trypanosoma cruzi among eleven potential reservoir species from six states across the southern United States.

PubMed

Brown, Emily L; Roellig, Dawn M; Gompper, Matthew E; Monello, Ryan J; Wenning, Krista M; Gabriel, Mourad W; Yabsley, Michael J

2010-10-01

Trypanosoma cruzi, the causative agent of Chagas' disease, is a substantial public health concern in Latin America. Although rare in humans and domestic animals in the United States, T. cruzi is commonly detected in some wildlife species, most commonly raccoons (Procyon lotor) and Virginia opossums (Didelphis virginiana). To increase our understanding of the reservoir host species range and geographic distribution, 11 species of mammals from six states spanning the known range of T. cruzi (Arizona, California, Florida, Georgia, Missouri, and Virginia) were tested for antibodies to T. cruzi using indirect immunofluorescent antibody testing. In addition, culture isolation attempts were conducted on a limited number of animals from Georgia and Florida. Evidence of T. cruzi was found in every state except California; however, low numbers of known reservoirs were tested in California. In general, the highest seroprevalence rates were found in raccoons (0-68%) and opossums (17-52%), but antibodies to T. cruzi were also detected in small numbers of striped skunks (Mephitis mephitis) from Arizona and Georgia, bobcats (Lynx rufus) from Georgia, two coyotes (Canis latrans) from Georgia and Virginia, and a ringtail (Bassariscus astutus) from Arizona. Culture-based prevalence rates for raccoons were significantly greater than those for opossums; however, seroprevalences of raccoons and opossums from several geographic locations in Georgia and Florida were not different, indicating that exposure rates of these two species are similar within these areas. For both raccoons and opossums, seroprevalence was significantly higher in females than in males. No difference was detected in seroprevalence between adults and juveniles and between animals caught in urban and rural locations. Our results indicate that T. cruzi prevalence varies by host species, host characteristics, and geographic region and provides data to guide future studies on the natural history of T. cruzi in the

The Iberian Peninsula corridor or cul-de-sac? Mammalian faunal change and possible routes of dispersal in the last 2 million years

NASA Astrophysics Data System (ADS)

O'Regan, Hannah J.

2008-11-01

The Iberian Peninsula is almost surrounded by the sea and is topographically and ecologically variable. These factors will have impacted on both the distribution and dispersal patterns of large mammals (including hominins) within Iberia, and are considered in detail in this paper. There are two routes of mammalian dispersal into Iberia: across the Pyrenees and across the Gibraltar Strait. With an increasing interest in the possible use of coastlines by early hominins the latter route has been the focus of much discussion. However, the arguments are limited by the relative lack of hominin remains and archaeology from the Early Pleistocene. This paper takes a wider perspective to hominin dispersals by examining what is known of the evolution and movements of other taxa in Iberia and how these may inform our understanding of the hominin fossil record. Beginning by briefly reviewing the present day and Pleistocene glacial and interglacial vegetation of Iberia, it then considers the large-mammal fauna. Particular attention is paid to the potential routes of movement for terrestrial animals in and out of the peninsula, and the evidence for each route is assessed. Iberia was a refuge for temperate species during the Quaternary glacial cycles and movements of Quaternary faunas are reviewed in the light of modern phylogeographic analyses and studies of fossil assemblages. Iberian faunas are highly variable, with some absences of otherwise widespread European animals, but cold-phase taxa such as reindeer and woolly rhinoceros did cross the Pyrenees. It seems that the large mountain ranges were less a barrier for the dispersal of these taxa than the line which today forms the limit of the summer drought. Iberia also provided the last refuge for extinct species such as the Neanderthals and endangered extant species such as the Iberian lynx.

The extremely metal-poor galaxy DDO 68: the luminous blue variable, Hα shells and the most luminous stars

NASA Astrophysics Data System (ADS)

Pustilnik, S. A.; Makarova, L. N.; Perepelitsyna, Y. A.; Moiseev, A. V.; Makarov, D. I.

2017-03-01

This paper presents new results from the ongoing study of the unusual Lynx-Cancer void galaxy DDO 68, which has star-forming regions of record low metallicity [12+log (O/H) ˜7.14]. The results include the following. (I) A new spectrum and photometry have been obtained with the 6-m SAO RAS telescope (BTA) for the luminous blue variable (LBV = DDO68-V1). Photometric data sets were complemented with others based on the Sloan Digital Sky Survey (SDSS) and the Hubble Space Telescope (HST) archive images. (II) We performed an analysis of the DDO 68 supergiant shell (SGS) and the prominent smaller Hα arcs/shells visible in the HST image coupled with kinematic maps in Hα obtained with the Fabry-Perot interferometer (FPI) at the BTA. (III) We compiled a list of about 50 of the most luminous stars (-9.1 mag < MV < -6.0 mag) identified from the HST images associated with the star-forming regions with known extremely low O/H. This is intended to pave the path for the current science to be investigated with the next generation of giant telescopes. We have confirmed earlier hints of significant variation of the LBV optical light, deriving its amplitude as ΔV ≳ 3.7 mag for the first time. New data suggest that in 2008-2010 the LBV reached MV = -10.5 mag and probably underwent a giant eruption. We argue that the structure of star-forming complexes along the SGS ('Northern Ring') perimeter provides evidence for sequential induced star-formation episodes caused by the shell gas instabilities and gravitational collapse. The variability of some luminous extremely metal-poor stars in DDO 68 can currently be monitored with medium-size telescopes at sites with superb seeing.

Metabolomics-based mechanisms exploration of Huang-Lian Jie-Du decoction on cerebral ischemia via UPLC-Q-TOF/MS analysis on rat serum.

PubMed

Zhu, Baojie; Cao, Huiting; Sun, Limin; Li, Bo; Guo, Liwei; Duan, Jinao; Zhu, Huaxu; Zhang, Qichun

2018-04-24

Huang-Lian Jie-Du decoction (HLJDD), a traditional formula of Chinese medicine constituted with Rhizoma Coptidis, RadixScutellariae, CortexPhellodendri amurensis and Fructus Gardeniae, exhibits unambiguous therapeutic effect on cerebral ischemia via multi-targets action. Further investigation, however, is still required to explore the relationship between those mechanisms and targets through system approaches. Rats of cerebral ischemia were completed by middle cerebral artery occlusion (MCAO) with reperfusion. Following evaluation of pharmacological actions of HLJDD on MCAO rats, the plasma samples from rats of control, MCAO and HLJDD-treated MCAO groups were prepared strictly and subjected to ultra-performance liquid chromatography quadrupole time of flight mass spectrometry for metabolites analysis. The raw mass data were imported to MassLynx software for peak detection and alignment, and further introduced to EZinfo 2.0 software for orthogonal projection to latent structures analysis, principal component analysis and partial least-squares-discriminant analysis. The metabolic pathways assay of those potential biomarkers were performed with MetaboAnalyst through the online database, HMDB, Metlin, KEGG and SMPD. Those intriguing metabolic pathways were further investigated via biochemical assay. HLJDD ameliorated the MCAO-induce cerebral damage and blocked the severe inflammation response. There were nineteen different biomarkers identified among control, MCAO and HLJDD-treated MCAO groups. Ten metabolic pathways were proposed from these significant metabolites. Incorporation with the biochemical assay of cerebral tissue, modulation of metabolic stress, regulation glutamate/GABA-glutamine cycle and enhancement of cholinergic neurons function were explored that involved in the actions of HLJDD on cerebral ischemia. HLJDD achieves therapeutic action on cerebral ischemia via coordinating the basic pathophysiological network of metabolic stress, glutamate metabolism

Constraining hydrostatic mass bias of galaxy clusters with high-resolution X-ray spectroscopy

NASA Astrophysics Data System (ADS)

Ota, Naomi; Nagai, Daisuke; Lau, Erwin T.

2018-04-01

Gas motions in galaxy clusters play important roles in determining the properties of the intracluster medium (ICM) and in the constraint of cosmological parameters via X-ray and Sunyaev-Zel'dovich effect observations of galaxy clusters. The Hitomi measurements of gas motions in the core of the Perseus Cluster have provided new insights into the physics in galaxy clusters. The XARM mission, equipped with the Resolve X-ray micro-calorimeter, will continue Hitomi's legacy by measuring ICM motions through Doppler shifting and broadening of emission lines in a larger number of galaxy clusters, and at larger radii. In this work, we investigate how well we can measure bulk and turbulent gas motions in the ICM with XARM, by analyzing mock XARM simulations of galaxy clusters extracted from cosmological hydrodynamic simulations. We assess how photon counts, spectral fitting methods, multiphase ICM structure, deprojections, and region selection affect the measurements of gas motions. We first show that XARM is capable of recovering the underlying spherically averaged turbulent and bulk velocity profiles for dynamically relaxed clusters to within ˜50% with a reasonable amount of photon counts in the X-ray emission lines. We also find that there are considerable azimuthal variations in the ICM velocities, where the velocities measured in a single azimuthal direction can significantly deviate from the true value even in dynamically relaxed systems. Such variation must be taken into account when interpreting data and developing observing strategies. We will discuss the prospect of using the upcoming XARM mission to measure non-thermal pressure and to correct for the hydrostatic mass bias of galaxy clusters. Our results are broadly applicable for future X-ray missions, such as Athena and Lynx.

Constraining hydrostatic mass bias of galaxy clusters with high-resolution X-ray spectroscopy

NASA Astrophysics Data System (ADS)

Ota, Naomi; Nagai, Daisuke; Lau, Erwin T.

2018-06-01

Gas motions in galaxy clusters play important roles in determining the properties of the intracluster medium (ICM) and in the constraint of cosmological parameters via X-ray and Sunyaev-Zel'dovich effect observations of galaxy clusters. The Hitomi measurements of gas motions in the core of the Perseus Cluster have provided new insights into the physics in galaxy clusters. The XARM mission, equipped with the Resolve X-ray micro-calorimeter, will continue Hitomi's legacy by measuring ICM motions through Doppler shifting and broadening of emission lines in a larger number of galaxy clusters, and at larger radii. In this work, we investigate how well we can measure bulk and turbulent gas motions in the ICM with XARM, by analyzing mock XARM simulations of galaxy clusters extracted from cosmological hydrodynamic simulations. We assess how photon counts, spectral fitting methods, multiphase ICM structure, deprojections, and region selection affect the measurements of gas motions. We first show that XARM is capable of recovering the underlying spherically averaged turbulent and bulk velocity profiles for dynamically relaxed clusters to within ˜50% with a reasonable amount of photon counts in the X-ray emission lines. We also find that there are considerable azimuthal variations in the ICM velocities, where the velocities measured in a single azimuthal direction can significantly deviate from the true value even in dynamically relaxed systems. Such variation must be taken into account when interpreting data and developing observing strategies. We will discuss the prospect of using the upcoming XARM mission to measure non-thermal pressure and to correct for the hydrostatic mass bias of galaxy clusters. Our results are broadly applicable for future X-ray missions, such as Athena and Lynx.

Geo-spatial aspects of acceptance of illegal hunting of large carnivores in Scandinavia.

PubMed

Gangaas, Kristin E; Kaltenborn, Bjørn P; Andreassen, Harry P

2013-01-01

Human-carnivore conflicts are complex and are influenced by: the spatial distribution of the conflict species; the organisation and intensity of management measures such as zoning; historical experience with wildlife; land use patterns; and local cultural traditions. We have used a geographically stratified sampling of social values and attitudes to provide a novel perspective to the human - wildlife conflict. We have focused on acceptance by and disagreements between residents (measured as Potential Conflict Index; PCI) towards illegal hunting of four species of large carnivores (bear, lynx, wolf, wolverine). The study is based on surveys of residents in every municipality in Sweden and Norway who were asked their opinion on illegal hunting. Our results show how certain social values are associated with acceptance of poaching, and how these values differ geographically independent of carnivore abundance. Our approach differs from traditional survey designs, which are often biased towards urban areas. Although these traditional designs intend to be representative of a region (i.e. a random sample from a country), they tend to receive relatively few respondents from rural areas that experience the majority of conflict with carnivores. Acceptance of poaching differed significantly between Norway (12.7-15.7% of respondents) and Sweden (3.3-4.1% of respondents). We found the highest acceptance of illegal hunting in rural areas with free-ranging sheep and strong hunting traditions. Disagreements between residents (as measured by PCI) were highest in areas with intermediate population density. There was no correlation between carnivore density and either acceptance of illegal hunting or PCI. A strong positive correlation between acceptance of illegal hunting and PCI showed that areas with high acceptance of illegal hunting are areas with high potential conflict between people. Our results show that spatially-stratified surveys are required to reveal the large scale

High Trypanosoma cruzi infection prevalence associated with minimal cardiac pathology among wild carnivores in central Texas.

PubMed

Curtis-Robles, Rachel; Lewis, Barbara C; Hamer, Sarah A

2016-08-01

Infection with the zoonotic vector-borne protozoal parasite Trypanosoma cruzi causes Chagas disease in humans and dogs throughout the Americas. Despite the recognized importance of various wildlife species for perpetuating Trypanosoma cruzi in nature, relatively little is known about the development of cardiac disease in infected wildlife. Using a cross-sectional study design, we collected cardiac tissue and blood from hunter-donated wildlife carcasses- including raccoon (Procyon lotor), coyote (Canis latrans), gray fox (Urocyon cinereoargenteus), and bobcat (Lynx rufus) - from central Texas, a region with established populations of infected triatomine vectors and increasing diagnoses of Chagas disease in domestic dogs. Based on PCR analysis, we found that 2 bobcats (14.3%), 12 coyotes (14.3%), 8 foxes (13.8%), and 49 raccoons (70.0%) were positive for T. cruzi in at least one sample (right ventricle, apex, and/or blood clot). Although a histologic survey of right ventricles showed that 21.1% of 19 PCR-positive hearts were characterized by mild lymphoplasmocytic infiltration, no other lesions and no amastigotes were observed in any histologic section. DNA sequencing of the TcSC5D gene revealed that raccoons were infected with T. cruzi strain TcIV, and a single racoon harbored a TcI/TcIV mixed infection. Relative to other wildlife species tested here, our data suggest that raccoons may be important reservoirs of TcIV in Texas and a source of infection for indigenous triatomine bugs. The overall high level of infection in this wildlife community likely reflects high levels of vector contact, including ingestion of bugs. Although the relationship between the sylvatic cycle of T. cruzi transmission and human disease risk in the United States has yet to be defined, our data suggest that hunters and wildlife professionals should take precautions to avoid direct contact with potentially infected wildlife tissues.

Design of automatic rotor blades folding system using NiTi shape memory alloy actuator

NASA Astrophysics Data System (ADS)

Ali, M. I. F.; Abdullah, E. J.

2016-10-01

This present paper will study the requirements for development of a new Automatic Rotor Blades Folding (ARBF) system that could possibly solve the availability, compatibility and complexity issue of upgrading a manual to a fully automatic rotor blades folding system of a helicopter. As a subject matter, the Royal Malaysian Navy Super Lynx Mk 100 was chosen as the baseline model. The aim of the study was to propose a design of SMART ARBF's Shape Memory Alloy (SMA) actuator and proof of operating concept using a developed scale down prototype model. The performance target for the full folding sequence is less than ten minutes. Further analysis on design requirements was carried out, which consisted of three main phases. Phase 1 was studying the SMA behavior on the Nickel Titanium (NiTi) SMA wire and spring (extension type). Technical values like activation requirement, contraction length, and stroke- power and stroke-temperature relationship were gathered. Phase 2 was the development of the prototype where the proposed design of stepped-retractable SMA actuator was introduced. A complete model of the SMART ARBF system that consisted of a base, a main rotor hub, four main rotor blades, four SMA actuators and also electrical wiring connections was fabricated and assembled. Phase 3 was test and analysis whereby a PINENG-PN968s-10000mAh Power Bank's 5 volts, which was reduced to 2.5 volts using LM2596 Step-Down Converter, powered and activated the NiTi spring inside each actuator. The bias spring (compression type), which functions to protract and push the blades to spread position, will compress together with the retraction of actuators and pull the blades to the folding position. Once the power was removed and SMA spring deactivated, the bias spring stiffness will extend the SMA spring and casing and push the blades back to spread position. The timing for the whole revolution was recorded. Based on the experimental analysis, the recorded timing for folding sequence is

Comparative sacral morphology and the reconstructed tail lengths of five extinct primates: Proconsul heseloni, Epipliopithecus vindobonensis, Archaeolemur edwardsi, Megaladapis grandidieri, and Palaeopropithecus kelyus.

PubMed

Russo, Gabrielle A

2016-01-01

This study evaluated the relationship between the morphology of the sacrum-the sole bony link between the tail or coccyx and the rest of the body-and tail length (including presence/absence) and function using a comparative sample of extant mammals spanning six orders (Primates, Carnivora, Rodentia, Diprotodontia, Pilosa, Scandentia; N = 472). Phylogenetically-informed regression methods were used to assess how tail length varied with respect to 11 external and internal (i.e., trabecular) bony sacral variables with known or suspected biomechanical significance across all mammals, only primates, and only non-primates. Sacral variables were also evaluated for primates assigned to tail categories ('tailless,' 'nonprehensile short-tailed,' 'nonprehensile long-tailed,' and 'prehensile-tailed'). Compared to primates with reduced tail lengths, primates with longer tails generally exhibited sacra having larger caudal neural openings than cranial neural openings, and last sacral vertebrae with more mediolaterally-expanded caudal articular surfaces than cranial articular surfaces, more laterally-expanded transverse processes, more dorsally-projecting spinous processes, and larger caudal articular surface areas. Observations were corroborated by the comparative sample, which showed that shorter-tailed (e.g., Lynx rufus [bobcat]) and longer-tailed (e.g., Acinonyx jubatus [cheetah]) non-primate mammals morphologically converge with shorter-tailed (e.g., Macaca nemestrina) and longer-tailed (e.g., Macaca fascicularis) primates, respectively. 'Prehensile-tailed' primates exhibited last sacral vertebrae with more laterally-expanded transverse processes and greater caudal articular surface areas than 'nonprehensile long-tailed' primates. Internal sacral variables performed poorly compared to external sacral variables in analyses of extant primates, and were thus deemed less useful for making inferences concerning tail length and function in extinct primates. The tails lengths of

PoSSUM: Polar Suborbital Science in the Upper Mesosphere

NASA Astrophysics Data System (ADS)

Reimuller, J. D.; Fritts, D. C.; Thomas, G. E.; Taylor, M. J.; Mitchell, S.; Lehmacher, G. A.; Watchorn, S. R.; Baumgarten, G.; Plane, J. M.

2013-12-01

Project PoSSUM (www.projectpossum.org) is a suborbital research project leveraging imaging and remote sensing techniques from Reusable Suborbital Launch Vehicles (rSLVs) to gather critical climate data through use of the PoSSUM Observatory and the PoSSUM Aeronomy Laboratory. An acronym for Polar Suborbital Science in the Upper Mesosphere, PoSSUM grew from the opportunity created by the Noctilucent Cloud Imagery and Tomography Experiment, selected by the NASA Flight Opportunities Program as Experiment 46-S in March 2012. This experiment will employ an rSLV (e.g. the XCOR Lynx Mark II) launched from a high-latitude spaceport (e.g. Eielson AFB, Alaska or Kiruna, Sweden) during a week-long deployment scheduled for July 2015 to address critical questions concerning noctilucent clouds (NLCs) through flights that transition the cloud layer where the clouds will be under direct illumination from the sun. The 2015 Project PoSSUM NLC campaign will use the unique capability of rSLVs to address key under-answered questions pertaining to NLCs. Specifically, PoSSUM will answer: 1) What are the small-scale dynamics of NLCs and what does this tell us about the energy and momentum deposition from the lower atmosphere? 2) What is the seasonal variability of NLCs, mesospheric dynamics, and temperatures? 3) Are structures observed in the OH layer coupled with NLC structures? 4) How do NLCs nucleate? and 5) What is the geometry of NLC particles and how do they stratify? Instrumentation will include video and still-frame visible cameras (PoSSUMCam), infrared cameras, a mesospheric temperatures experiment, a depolarization LiDAR, a mesospheric density and temperatures experiment (MCAT), a mesospheric winds experiment, and a meteoric smoke detector (MASS). The instrument suite used on PoSSUM will mature through subsequent campaigns to develop an integrated, modular laboratory (the ';PoSSUM Observatory') that will provide repeatable, low cost, in-situ NLC and aeronomy observations as well

Greater sage-grouse nest predators in the Virginia Mountains of northwestern Nevada

USGS Publications Warehouse

Lockyer, Zachary B.; Coates, Peter S.; Casazza, Michael L.; Espinosa, Shawn; Delehanty, David J.

2013-01-01

Greater sage-grouse Centrocercus urophasianus, hereafter sage-grouse, populations have declined across their range due to the loss, degradation, and fragmentation of habitat. Habitat alterations can lead not only to vegetative changes but also to shifts in animal behavior and predator composition that may influence population vital rates, such as nest success. For example, common ravens Corvus corax are sage-grouse nest predators, and common raven abundance is positively associated with human-caused habitat alterations. Because nest success is a central component to sage-grouse population persistence, research that identifies factors influencing nest success will better inform conservation efforts. We used videography to unequivocally identify sage-grouse nest predators within the Virginia Mountains of northwestern Nevada, USA, from 2009 to 2011 and used maximum likelihood to calculate daily probability of nest survival. In the Virginia Mountains, fires, energy exploration, and other anthropogenic activities have altered historic sage-grouse habitat. We monitored 71 sage-grouse nests during the study, placing video cameras at 39 nests. Cumulative nest survival for all nests was 22.4% (95% CI, 13.0–33.4%), a survival rate that was significantly lower than other published results for sage-grouse in the Great Basin. Depredation was the primary cause for nest failure in our study (82.5%), and common ravens were the most frequent sage-grouse nest predator, accounting for 46.7% of nest depredations. We also successfully documented a suite of mammalian and reptilian species depredating sage-grouse nests, including some predators never previously confirmed in the literature to be sage-grouse nest predators (i.e., bobcats Lynx rufus and long-tailed weasels Mephitis frenata). Within the high elevation, disturbed habitat of the Virginia Mountains, low sage-grouse nest success may be limiting sage-grouse population growth. These results suggest that management actions that

Quantification and molecular characterization of the feline leukemia virus A receptor.

PubMed

Katrin Helfer-Hungerbuehler, A; Cattori, Valentino; Bachler, Barbara; Hartnack, Sonja; Riond, Barbara; Ossent, Pete; Lutz, Hans; Hofmann-Lehmann, Regina

2011-12-01

Virus receptors and their expression patterns on the cell surface determine the cell tropism of the virus, host susceptibility and the pathogenesis of the infection. Feline thiamine transport protein 1 (fTHTR1) has been identified as the receptor for feline leukemia virus (FeLV) A. The goal of the present study was to develop a quantitative, TaqMan real-time PCR assay to investigate fTHTR1 mRNA expression in tissues of uninfected and FeLV-infected cats, cats of different ages, in tumor tissues and leukocyte subsets. Moreover, the receptor was molecularly characterized in different feline species. fTHTR1 mRNA expression was detected in all 30 feline tissues investigated, oral mucosa scrapings and blood. Importantly, identification of significant differences in fTHTR1 expression relied on normalization with an appropriate reference gene. The lowest levels were found in the blood, whereas high levels were measured in the oral mucosa, salivary glands and the musculature. In the blood, T lymphocytes showed significantly higher fTHTR1 mRNA expression levels than neutrophil granulocytes. In vitro activation of peripheral blood mononuclear cells with concanavalin A alone or followed by interleukin-2 led to a transient increase of fTHTR1 mRNA expression. In the blood, but not in the examined tissues, FeLV-infected cats tended to have lower fTHTR1 mRNA levels than uninfected cats. The fTHTR1 mRNA levels were not significantly different between tissues with lymphomas and the corresponding non-neoplastic tissues. fTHTR1 was highly conserved among different feline species (Iberian lynx, Asiatic and Indian lion, European wildcat, jaguarundi, domestic cat). In conclusion, while ubiquitous fTHTR1 mRNA expression corresponded to the broad target tissue range of FeLV, particularly high fTHTR1 levels were found at sites of virus entry and shedding. The differential susceptibility of different species to FeLV could not be attributed to variations in the fTHTR1 sequence. Copyright �

DOE Office of Scientific and Technical Information (OSTI.GOV)

Brock, Billy C.; Allen, Steven E.

Piloted Aircraft (RPA) systems, radars, and electro-optic and related mission systems, including the Predator (r) /Gray Eagle-series and Lynx (r) Multi-mode Radar. - 4 -« less

A Community Perspective on the Effects of Climate Change on Species Distributions in the Boreal Forest of the Northeastern United States

NASA Astrophysics Data System (ADS)

Morelli, T. L.; DeLuca, W. V.; Duclos, T. R.; Foster, J. R.; Siren, A. P.

2016-12-01

The way that climate change will impact species ranges through habitat change and modify species interactions is not well enough understood. We took a community view of the climate-vulnerable, biologically-important spruce-fir forest ecosystem of the northeastern U.S., examining if and how species are responding to warming and changing precipitation patterns. We examined how fluctuations in temperature and snowpack influence distributional shifts along elevational and latitudinal gradients; for example, milder winter conditions may allow generalist carnivores such as bobcats to access boreal forest habitat, increasing direct and indirect competition with Canada lynx and American marten for prey. In another example of climate-driven predation shifts, upslope shifts of American red squirrels may increase predation rates on vulnerable montane songbirds. We combined data from weather stations with model-based high resolution data to obtain information on historical and present climate variables. We forecasted spruce-fir forest extent using landscape and ecosystem models under a combination of global circulation model projections and representative concentration pathways for the northern Appalachians. Presence and abundance data from animal surveys were used to build occupancy models to assess the habitat, climate, and species relationships. Species responded individually with geographic variation in response within and across species. Some species closely tracked climate changes, whereas others showed no response, or even responses such as shifts southward that were counter to what would be expected. For example, although low elevation boreal bird species showed evidence of expanding upslope, most high elevation species expanded downslope. This work highlights the need to take a mechanistic perspective of species responses to climate change and avoid generalizations of simple shifts northward and upward. Understanding how climate change affects community dynamics will

Tracking Cats: Problems with Placing Feline Carnivores on δ18O, δD Isoscapes

PubMed Central

Pietsch, Stephanie J.; Hobson, Keith A.; Wassenaar, Leonard I.; Tütken, Thomas

2011-01-01

Background Several felids are endangered and threatened by the illegal wildlife trade. Establishing geographic origin of tissues of endangered species is thus crucial for wildlife crime investigations and effective conservation strategies. As shown in other species, stable isotope analysis of hydrogen and oxygen in hair (δDh, δ18Oh) can be used as a tool for provenance determination. However, reliably predicting the spatial distribution of δDh and δ18Oh requires confirmation from animal tissues of known origin and a detailed understanding of the isotopic routing of dietary nutrients into felid hair. Methodology/Findings We used coupled δDh and δ18Oh measurements from the North American bobcat (Lynx rufus) and puma (Puma concolor) with precipitation-based assignment isoscapes to test the feasibility of isotopic geo-location of felidae. Hairs of felid and rabbit museum specimens from 75 sites across the United States and Canada were analyzed. Bobcat and puma lacked a significant correlation between H/O isotopes in hair and local waters, and also exhibited an isotopic decoupling of δ18Oh and δDh. Conversely, strong δD and δ18O coupling was found for key prey, eastern cottontail rabbit (Sylvilagus floridanus; hair) and white-tailed deer (Odocoileus virginianus; collagen, bone phosphate). Conclusions/Significance Puma and bobcat hairs do not adhere to expected pattern of H and O isotopic variation predicted by precipitation isoscapes for North America. Thus, using bulk hair, felids cannot be placed on δ18O and δD isoscapes for use in forensic investigations. The effective application of isotopes to trace the provenance of feline carnivores is likely compromised by major controls of their diet, physiology and metabolism on hair δ18O and δD related to body water budgets. Controlled feeding experiments, combined with single amino acid isotope analysis of diets and hair, are needed to reveal mechanisms and physiological traits explaining why felid hair does

Optical Measurement Center Status

NASA Technical Reports Server (NTRS)

Rodriguez, H.; Abercromby, K.; Mulrooney, M.; Barker, E.

2007-01-01

Beginning in 2005, an optical measurement center (OMC) was created to measure the photometric signatures of debris pieces. Initially, the OMC was equipped with a 300 W xenon arc lamp, a SBIG 512 x 512 ST8X MEI CCD camera with standard Johnson filters, and a Lynx 6 robotic arm with five degrees of freedom. As research progressed, modifications were made to the equipment. A customized rotary table was built to overcome the robot s limitation of 180 degree wrist rotation and provide complete 360 degree rotation with little human interaction. This change allowed an initial phase angle (source-object-camera angle) of roughly 5 degrees to be adjusted to 7, 10, 15, 18, 20, 25, or 28 degrees. Additionally, the Johnson R and I CCD filters were replaced with the standard astronomical filters suite (Bessell R,I). In an effort to reduce object saturation, the two generic aperture stops were replaced with neutral density filters. Initially data were taken with aluminum debris pieces from the European Space Operations Centre ESOC2 ground test and more recently with samples from a thermal multi-layered insulation (MLI) commonly used on rocket bodies and satellites. The ESOC2 data provided light curve analysis for one type of material but many different shapes, including flat, bent, curled, folded, and torn. The MLI samples are roughly the same size and shape, but have different surfaces that give rise to interesting photometric light curves. In addition, filter photometry was conducted on the MLI pieces, a process that also will be used on the ESOC2 samples. While obtaining light curve data an anomalous drop in intensity was observed when the table revolved through the second 180 degree rotation. Investigation revealed that the robot s wrist rotation is not reliable past 80 degrees, thus the object may be at slightly different angles at the 180 degree transition. To limit this effect, the initial rotation position begins with the object s minimal surface area facing the camera.

The Gene Set Builder: collation, curation, and distribution of sets of genes

PubMed Central

Yusuf, Dimas; Lim, Jonathan S; Wasserman, Wyeth W

2005-01-01

Background In bioinformatics and genomics, there are many applications designed to investigate the common properties for a set of genes. Often, these multi-gene analysis tools attempt to reveal sequential, functional, and expressional ties. However, while tremendous effort has been invested in developing tools that can analyze a set of genes, minimal effort has been invested in developing tools that can help researchers compile, store, and annotate gene sets in the first place. As a result, the process of making or accessing a set often involves tedious and time consuming steps such as finding identifiers for each individual gene. These steps are often repeated extensively to shift from one identifier type to another; or to recreate a published set. In this paper, we present a simple online tool which – with the help of the gene catalogs Ensembl and GeneLynx – can help researchers build and annotate sets of genes quickly and easily. Description The Gene Set Builder is a database-driven, web-based tool designed to help researchers compile, store, export, and share sets of genes. This application supports the 17 eukaryotic genomes found in version 32 of the Ensembl database, which includes species from yeast to human. User-created information such as sets and customized annotations are stored to facilitate easy access. Gene sets stored in the system can be "exported" in a variety of output formats – as lists of identifiers, in tables, or as sequences. In addition, gene sets can be "shared" with specific users to facilitate collaborations or fully released to provide access to published results. The application also features a Perl API (Application Programming Interface) for direct connectivity to custom analysis tools. A downloadable Quick Reference guide and an online tutorial are available to help new users learn its functionalities. Conclusion The Gene Set Builder is an Ensembl-facilitated online tool designed to help researchers compile and manage sets of

Weather and Prey Predict Mammals' Visitation to Water.

PubMed

Harris, Grant; Sanderson, James G; Erz, Jon; Lehnen, Sarah E; Butler, Matthew J

2015-01-01

Throughout many arid lands of Africa, Australia and the United States, wildlife agencies provide water year-round for increasing game populations and enhancing biodiversity, despite concerns that water provisioning may favor species more dependent on water, increase predation, and reduce biodiversity. In part, understanding the effects of water provisioning requires identifying why and when animals visit water. Employing this information, by matching water provisioning with use by target species, could assist wildlife management objectives while mitigating unintended consequences of year-round watering regimes. Therefore, we examined if weather variables (maximum temperature, relative humidity [RH], vapor pressure deficit [VPD], long and short-term precipitation) and predator-prey relationships (i.e., prey presence) predicted water visitation by 9 mammals. We modeled visitation as recorded by trail cameras at Sevilleta National Wildlife Refuge, New Mexico, USA (June 2009 to September 2014) using generalized linear modeling. For 3 native ungulates, elk (Cervus Canadensis), mule deer (Odocoileus hemionus), and pronghorn (Antilocapra americana), less long-term precipitation and higher maximum temperatures increased visitation, including RH for mule deer. Less long-term precipitation and higher VPD increased oryx (Oryx gazella) and desert cottontail rabbits (Sylvilagus audubonii) visitation. Long-term precipitation, with RH or VPD, predicted visitation for black-tailed jackrabbits (Lepus californicus). Standardized model coefficients demonstrated that the amount of long-term precipitation influenced herbivore visitation most. Weather (especially maximum temperature) and prey (cottontails and jackrabbits) predicted bobcat (Lynx rufus) visitation. Mule deer visitation had the largest influence on coyote (Canis latrans) visitation. Puma (Puma concolor) visitation was solely predicted by prey visitation (elk, mule deer, oryx). Most ungulate visitation peaked during May and

Flathead River Basin Hydrologic Observatory, Northern Rocky Mountains

NASA Astrophysics Data System (ADS)

Woessner, W. W.; Running, S. W.; Potts, D. F.; Kimball, J. S.; Deluca, T. H.; Fagre, D. B.; Makepeace, S.; Hendrix, M. S.; Lorang, M. S.; Ellis, B. K.; Lafave, J.; Harper, J.

2004-12-01

We are proposing the 22, 515 km2 glacially-sculpted Flathead River Basin located in Montana and British Columbia as a Hydrologic Observatory. This hydrologic landscape is diverse and includes large pristine watersheds, rapidly developing intermountain valleys, and a 95 km2 regulated reservoir and 510 km2 lake. The basin has a topographic gradient of over 2,339 m, and spans high alpine to arid climatic zones and a range of biomes. Stream flows are snow-melt dominated and underpinned by groundwater baseflow. The site headwaters contain 37 glaciers and thousands of square kilometers of watersheds in which fire and disease are the only disturbances. In contrast, the HO also contains watersheds at multiple scales that were dominated by glaciers within the last 100 years but are now glacier free, impacted by timber harvests and fires of varying ages to varying degrees, modified by water management practices including irrigation diversion and dams, and altered by development for homes, cities and agriculture. This Observatory provides a sensitive monitor of historic and future climatic shifts, air shed influences and impacts, and the consequences of land and water management practices on the hydrologic system. The HO watersheds are some of the only pristine watersheds left in the contiguous U.S.. They provide critical habitat for key species including the native threaten bull trout and lynx, and the listed western cutthroat trout, bald eagle, gray wolf and the grizzly bear. For the last several thousand years this system has been dominated by snow-melt runoff and moderated by large quantities of water stored in glacial ice. However, the timing and magnitude of droughts and summer flows have changed dramatically. With the information that can be gleaned from sediment cores and landscape records at different scales, this HO provides scientists with opportunities to establish baseline watershed conditions and data on natural hydrologic variability within the system. Such a

Weather and Prey Predict Mammals’ Visitation to Water

PubMed Central

Harris, Grant; Sanderson, James G.; Erz, Jon; Lehnen, Sarah E.; Butler, Matthew J.

2015-01-01

Throughout many arid lands of Africa, Australia and the United States, wildlife agencies provide water year-round for increasing game populations and enhancing biodiversity, despite concerns that water provisioning may favor species more dependent on water, increase predation, and reduce biodiversity. In part, understanding the effects of water provisioning requires identifying why and when animals visit water. Employing this information, by matching water provisioning with use by target species, could assist wildlife management objectives while mitigating unintended consequences of year-round watering regimes. Therefore, we examined if weather variables (maximum temperature, relative humidity [RH], vapor pressure deficit [VPD], long and short-term precipitation) and predator-prey relationships (i.e., prey presence) predicted water visitation by 9 mammals. We modeled visitation as recorded by trail cameras at Sevilleta National Wildlife Refuge, New Mexico, USA (June 2009 to September 2014) using generalized linear modeling. For 3 native ungulates, elk (Cervus Canadensis), mule deer (Odocoileus hemionus), and pronghorn (Antilocapra americana), less long-term precipitation and higher maximum temperatures increased visitation, including RH for mule deer. Less long-term precipitation and higher VPD increased oryx (Oryx gazella) and desert cottontail rabbits (Sylvilagus audubonii) visitation. Long-term precipitation, with RH or VPD, predicted visitation for black-tailed jackrabbits (Lepus californicus). Standardized model coefficients demonstrated that the amount of long-term precipitation influenced herbivore visitation most. Weather (especially maximum temperature) and prey (cottontails and jackrabbits) predicted bobcat (Lynx rufus) visitation. Mule deer visitation had the largest influence on coyote (Canis latrans) visitation. Puma (Puma concolor) visitation was solely predicted by prey visitation (elk, mule deer, oryx). Most ungulate visitation peaked during May and

Mark-recapture and mark-resight methods for estimating abundance with remote cameras: a carnivore case study

USGS Publications Warehouse

Alanso, Robert S.; McClintock, Brett T.; Lyren, Lisa M.; Boydston, Erin E.; Crooks, Kevin R.

2015-01-01

Abundance estimation of carnivore populations is difficult and has prompted the use of non-invasive detection methods, such as remotely-triggered cameras, to collect data. To analyze photo data, studies focusing on carnivores with unique pelage patterns have utilized a mark-recapture framework and studies of carnivores without unique pelage patterns have used a mark-resight framework. We compared mark-resight and mark-recapture estimation methods to estimate bobcat (Lynx rufus) population sizes, which motivated the development of a new "hybrid" mark-resight model as an alternative to traditional methods. We deployed a sampling grid of 30 cameras throughout the urban southern California study area. Additionally, we physically captured and marked a subset of the bobcat population with GPS telemetry collars. Since we could identify individual bobcats with photos of unique pelage patterns and a subset of the population was physically marked, we were able to use traditional mark-recapture and mark-resight methods, as well as the new “hybrid” mark-resight model we developed to estimate bobcat abundance. We recorded 109 bobcat photos during 4,669 camera nights and physically marked 27 bobcats with GPS telemetry collars. Abundance estimates produced by the traditional mark-recapture, traditional mark-resight, and “hybrid” mark-resight methods were similar, however precision differed depending on the models used. Traditional mark-recapture and mark-resight estimates were relatively imprecise with percent confidence interval lengths exceeding 100% of point estimates. Hybrid mark-resight models produced better precision with percent confidence intervals not exceeding 57%. The increased precision of the hybrid mark-resight method stems from utilizing the complete encounter histories of physically marked individuals (including those never detected by a camera trap) and the encounter histories of naturally marked individuals detected at camera traps. This new estimator

Behavioral profiles of the captive juvenile whooping crane (Grus americana) as an indicator of reintroduction behavior and survival

USGS Publications Warehouse

Kreger, M.D.

2003-01-01

Predation by bobcats (Lynx rufus) has been the greatest cause of mortality of whooping cranes (Grus americana) in the reintroduced population in Florida. This study investigated whether the behavior of juvenile cranes during captive rearing and shortly after release can be used to predict their chances of survival once released in the wild. This study also examined differences in behavior based on rearing treatments and whether differences observed during rearing continued at the release site. Experimental rearing treatments were parent reared (PR), hand reared (RR), and hand reared with exercise (HRE). Two annual cycles of cranes were observed from hatch to 20 weeks of age in captivity (n=56 birds). Post-release bebavioral data were collected at the release site for a minimum of two weeks (n=34 birds), with mortality data collected up to one year post release (n=38 birds). Behavioral time budgets were compared using repeated measures ANOVA. Logistic regression was used to build a model to identify behaviors that were associated with first-year survival. During rearing, PR birds were the most vigilant. There were no behavioral differences between HR and HRE birds. Generally, rearing treatments had few long-term effects on the post-release behavior of the birds. The main behavioral differences during rearing and after release were the frequency of bouts and the percentage of time spent performing different behaviors. This may be attributed to foraging strategies and adaptation from captive conditions to the wild. Survival was not related to rearing treatment. Fifty-five percent of the birds survived the first year post-release based upon data pooled over two years. During rearing, the frequency of foraging bouts was positively correlated to survival. Survival was negatively correlated to the frequency of walking bouts during rearing, and release weight of the birds. These correlations accounted for 32 percent of the variability in survival. At the release site, 20

NASA Program Office Technology Investments to Enable Future Missions

NASA Astrophysics Data System (ADS)

Thronson, Harley; Pham, Thai; Ganel, Opher

2018-01-01

The Cosmic Origins (COR) and Physics of the Cosmos (PCOS) Program Offices (POs) reside at NASA GSFC and implement priorities for the NASA HQ Astrophysics Division (APD). One major aspect of the POs’ activities is managing our Strategic Astrophysics Technology (SAT) program to mature technologies for future strategic missions. The Programs follow APD guidance on which missions are strategic, currently informed by the NRC’s 2010 Decadal Survey report, as well as APD’s Implementation Plan and the Astrophysics Roadmap.In preparation for the upcoming 2020 Decadal Survey, the APD has established Science and Technology Definition Teams (STDTs) to study four large-mission concepts: the Origins Space Telescope (née, Far-IR Surveyor), Habitable Exoplanet Imaging Mission, Large UV/Optical/IR Surveyor, and Lynx (née, X-ray Surveyor). The STDTs will develop the science case and design reference mission, assess technology development needs, and estimate the cost of their concept. A fifth team, the L3 Study Team (L3ST), was charged to study potential US contributions to ESA’s planned Laser Interferometer Space Antenna (LISA) gravitational-wave observatory.The POs use a rigorous and transparent process to solicit technology gaps from the scientific and technical communities, and prioritize those entries based on strategic alignment, expected impact, cross-cutting applicability, and urgency. For the past two years, the technology-gap assessments of the four STDTs and the L3ST are included in our process. Until a study team submits its final report, community-proposed changes to gaps submitted or adopted by a study team are forwarded to that study team for consideration.We discuss our technology development process, with strategic prioritization informing calls for SAT proposals and informing investment decisions. We also present results of the 2017 technology gap prioritization and showcase our current portfolio of technology development projects. To date, 96 COR and 86

Pathogen exposure varies widely among sympatric populations of wild and domestic felids across the United States

USGS Publications Warehouse

Carver, Scott; Bevins, Sarah N.; Lappin, Michael R.; Boydston, Erin E.; Lyren, Lisa M.; Alldredge, Mathew W.; Logan, Kenneth A.; Sweanor, Linda L.; Riley, Seth P.D.; Serieys, Laurel E.K.; Fisher, Robert N.; Vickers, T. Winston; Boyce, Walter M.; McBride, Roy; Cunnigham, Mark C.; Jennings, Megan; Lewis, Jesse S.; Lunn, Tamika; Crooks, Kevin R.; VandeWoude, Sue

2016-01-01

Understanding how landscape, host, and pathogen traits contribute to disease exposure requires systematic evaluations of pathogens within and among host species and geographic regions. The relative importance of these attributes is critical for management of wildlife and mitigating domestic animal and human disease, particularly given rapid ecological changes, such as urbanization. We screened >1,000 samples from sympatric populations of puma (Puma concolor), bobcat (Lynx rufus) and domestic cat (Felis catus) across urban gradients in six sites, representing three regions, in North America for exposure to a representative suite of bacterial, protozoal and viral pathogens (Bartonella sp., Toxoplasma gondii, feline herpesvirus-1, feline panleukopenea virus, feline calicivirus, feline immunodeficiency virus). We evaluated prevalence within each species, and examined host trait and land cover determinants of exposure-providing an unprecedented analysis of factors relating to potential for infections in domesticated and wild felids. Prevalence differed among host species (highest for puma and lowest for domestic cat) and was greater for indirectly transmitted pathogens. Sex was inconsistently predictive of exposure to directly transmitted pathogens only, and age infrequently predictive of both direct and indirectly transmitted pathogens. Determinants of pathogen exposure were widely divergent between the wild felid species. For puma, suburban landuse predicted increased exposure to Bartonella sp. in southern California, and FHV-1 exposure increased near urban edges in Florida. This may suggest inter-specific transmission with domestic cats via flea vectors (California) and direct contact (Florida) around urban boundaries. Bobcats captured near urban areas had increased exposure to T. gondii in Florida, suggesting an urban source of prey. Bobcats captured near urban areas in Colorado and Florida had higher FIV exposure, possibly suggesting increased intra

Use of quadrupole time-of-flight mass spectrometry to determine proposed structures of transformation products of the herbicide bromacil after water chlorination.

PubMed

Ibáñez, María; Sancho, Juan V; Pozo, Oscar J; Hernández, Félix

2011-10-30

structures of the TPs found. For those compounds that displayed poor fragmentation, product ion scan (MS/MS) experiments were also performed. On processing the data with specialized software (MetaboLynx), four bromacil TPs were detected and their structures were elucidated. To our knowledge, two of them had not previously been reported. Copyright © 2011 John Wiley & Sons, Ltd.

Supplement Analysis for the Wildlife Mitigation Program EIS (DOE/EIS-0246/SA-36)

DOE Office of Scientific and Technical Information (OSTI.GOV)

N /A

2003-10-10

The compliance checklist for this project was originally completed by the Burns Paiute Tribe in 2000, and meets the standards and guidelines for the Wildlife Mitigation Program Environmental Impact Statement (EIS) and Record of Decision (ROD), as well as the Watershed Management Program Environmental Impact Statement (EIS) and Record of Decision (ROD). The Logan Valley Wildlife Mitigation Plan, now being implemented, continues to be consistent with the above mentioned EISs and RODs. Pursuant to its obligations under the Endangered Species Act, BPA has made a determination of whether its proposed project will have any effects on any listed species undermore » the jurisdiction of the United States Fish and Wildlife Service (USFWS). A species list was obtained from USFWS on June 12, 2003, identifying bald eagles, Canada lynx, and bull trout as potentially occurring in the project area. A site assessment was conducted on July 15, 2003 to determine if these species were present and the potential effects of project activities. A ''No Effect'' determination was made for all ESA-listed species. There were no listed species under the jurisdiction of NOAA Fisheries present in the project area. As management activities proceed in the future, BPA will annually re-assess potential effects of planned activities on listed species. The Burns-Paiute Tribe conducted a literature search for historic and archaeological sites on the property on January 11, 1999. No known sites were identified. Further site-specific surveys will be conducted for individual ground disturbing activities. The results of these surveys will be sent to the Oregon State Historic Preservation Office and BPA. BPA will annually summarize and submit a report to the State Historic Preservation Office. On December 29, 1999, Fred Walasavage of BPA completed a Phase I Site Assessment and concluded that the site did not reveal any environmental factors that would pose a significant liability for remedial action or

Temporal, geomagnetic and related attributes of kimberlite magmatism at Ekati, Northwest Territories, Canada

NASA Astrophysics Data System (ADS)

Lockhart, Grant; Grütter, Herman; Carlson, Jon

2004-09-01

This paper outlines the development of a multi-disciplinary strategy to focus exploration for economic kimberlites on the Ekati property. High-resolution aeromagnetic data provide an over-arching spatial and magnetostratigraphic framework for exploration and kimberlite discovery at Ekati, and hence also for this investigation. The temporal, geomagnetic, spatial and related attributes of kimberlites with variable diamond content have been constrained by judiciously augmenting the information gathered during routine exploration with detailed, laboratory-based or field-based investigations. The natural remanent magnetisation of 36 Ekati kimberlites has been correlated with their age as determined by isotopic dating techniques, and placed in the context of a well-constrained geomagnetic polarity timescale. Kimberlite magmatism occurred over the period 75 to 45 Ma, in at least five temporally discrete intrusive episodes. Based on current evidence, the older kimberlites (75 to 59 Ma) have low diamond contents and are distributed throughout the property. Younger kimberlites (56 to 45 Ma) have moderate to high diamond contents and occur in three distinct intrusive corridors with NNE to NE orientations. Economic kimberlite pipes erupted at 55.4±0.4 Ma along the A154-Lynx intrusive corridor, which is 7 km wide and oriented at 015°, and at 53.2±0.3 Ma along the Panda intrusive corridor, which is 1 km wide and oriented at 038°. The intrusion ages straddle a paleopole reversal at Chron C24n, consistent with the observation that the older economic kimberlites present as aeromagnetic "low" anomalies while the younger economic pipes are characterised as aeromagnetic "highs". The aeromagnetic responses for these kimberlites are generally muted because they contain volcaniclastic rock types with low magnetic susceptibility. Kimberlites throughout the Ekati property carry a primary natural magnetic remanence (NRM) vector in Ti-bearing groundmass magnetite, and it dominates over

The Cycles of Snow Cover in Pyrenees Mountain and Mont Lebanon Analyzed Using the Global Modeling Technique.

NASA Astrophysics Data System (ADS)

Drapeau, L.; Mangiarotti, S.; Le Jean, F.; Gascoin, S.; Jarlan, L.

2014-12-01

The global modeling technique provides a way to obtain ordinary differential equations from single time series1. This technique, initiated in the 1990s, could be applied successfully to numerous theoretic and experimental systems. More recently it could be applied to environmental systems2,3. Here this technique is applied to seasonal snow cover area in the Pyrenees mountain (Europe) and Mont Lebanon (Mediterranean region). The snowpack evolution is complex because it results from combination of processes driven by physiography (elevation, slope, land cover...) and meteorological variables (precipitation, temperature, wind speed...), which are highly heterogeneous in such regions. Satellite observations in visible bands offer a powerful tool to monitor snow cover areas at global scale, with large resolutions range. Although this observable does not directly inform about snow water equivalent, its dynamical behavior strongly relies on it. Therefore, snow cover area is likely to be a good proxy of the global dynamics and global modeling technique a well adapted approach. The MOD10A2 product (500m) generated from MODIS by the NASA is used after a pretreatment is applied to minimize clouds effect. The global modeling technique is then applied using two packages4,5. The analysis is performed with two time series for the whole period (2000-2012) and year by year. Low-dimensional chaotic models are obtained in many cases. Such models provide a strong argument for chaos since involving the two necessary conditions in a synthetic way: determinism and strong sensitivity to initial conditions. The models comparison suggests important non-stationnarities at interannual scale which prevent from detecting long term changes. 1: Letellier et al 2009. Frequently asked questions about global modeling, Chaos, 19, 023103. 2: Maquet et al 2007. Global models from the Canadian lynx cycles as a direct evidence for chaos in real ecosystems. J. of Mathematical Biology, 55 (1), 21-39 3

A Genome-Wide Association Study for Clinical Mastitis in First Parity US Holstein Cows Using Single-Step Approach and Genomic Matrix Re-Weighting Procedure

PubMed Central

Tiezzi, Francesco; Parker-Gaddis, Kristen L.; Cole, John B.; Clay, John S.; Maltecca, Christian

2015-01-01

Clinical mastitis (CM) is one of the health disorders with large impacts on dairy farming profitability and animal welfare. The objective of this study was to perform a genome-wide association study (GWAS) for CM in first-lactation Holstein. Producer-recorded mastitis event information for 103,585 first-lactation cows were used, together with genotype information on 1,361 bulls from the Illumina BovineSNP50 BeadChip. Single-step genomic-BLUP methodology was used to incorporate genomic data into a threshold-liability model. Association analysis confirmed that CM follows a highly polygenic mode of inheritance. However, 10-adjacent-SNP windows showed that regions on chromosomes 2, 14 and 20 have impacts on genetic variation for CM. Some of the genes located on chromosome 14 (LY6K, LY6D, LYNX1, LYPD2, SLURP1, PSCA) are part of the lymphocyte-antigen-6 complex (LY6) known for its neutrophil regulation function linked to the major histocompatibility complex. Other genes on chromosome 2 were also involved in regulating immune response (IFIH1, LY75, and DPP4), or are themselves regulated in the presence of specific pathogens (ITGB6, NR4A2). Other genes annotated on chromosome 20 are involved in mammary gland metabolism (GHR, OXCT1), antibody production and phagocytosis of bacterial cells (C6, C7, C9, C1QTNF3), tumor suppression (DAB2), involution of mammary epithelium (OSMR) and cytokine regulation (PRLR). DAVID enrichment analysis revealed 5 KEGG pathways. The JAK-STAT signaling pathway (cell proliferation and apoptosis) and the ‘Cytokine-cytokine receptor interaction’ (cytokine and interleukines response to infectious agents) are co-regulated and linked to the ‘ABC transporters’ pathway also found here. Gene network analysis performed using GeneMania revealed a co-expression network where 665 interactions existed among 145 of the genes reported above. Clinical mastitis is a complex trait and the different genes regulating immune response are known to be pathogen

A Digital Motion Control System for Large Telescopes

NASA Astrophysics Data System (ADS)

Hunter, T. R.; Wilson, R. W.; Kimberk, R.; Leiker, P. S.

2001-05-01

We have designed and programmed a digital motion control system for large telescopes, in particular, the 6-meter antennas of the Submillimeter Array on Mauna Kea. The system consists of a single robust, high-reliability microcontroller board which implements a two-axis velocity servo while monitoring and responding to critical safety parameters. Excellent tracking performance has been achieved with this system (0.3 arcsecond RMS at sidereal rate). The 24x24 centimeter four-layer printed circuit board contains a multitude of hardware devices: 40 digital inputs (for limit switches and fault indicators), 32 digital outputs (to enable/disable motor amplifiers and brakes), a quad 22-bit ADC (to read the motor tachometers), four 16-bit DACs (that provide torque signals to the motor amplifiers), a 32-LED status panel, a serial port to the LynxOS PowerPC antenna computer (RS422/460kbps), a serial port to the Palm Vx handpaddle (RS232/115kbps), and serial links to the low-resolution absolute encoders on the azimuth and elevation axes. Each section of the board employs independent ground planes and power supplies, with optical isolation on all I/O channels. The processor is an Intel 80C196KC 16-bit microcontroller running at 20MHz on an 8-bit bus. This processor executes an interrupt-driven, scheduler-based software system written in C and assembled into an EPROM with user-accessible variables stored in NVSRAM. Under normal operation, velocity update requests arrive at 100Hz from the position-loop servo process running independently on the antenna computer. A variety of telescope safety checks are performed at 279Hz including routine servicing of a 6 millisecond watchdog timer. Additional ADCs onboard the microcontroller monitor the winding temperature and current in the brushless three-phase drive motors. The PID servo gains can be dynamically changed in software. Calibration factors and software filters can be applied to the tachometer readings prior to the application of

Proteomic analysis of human plasma in chronic rheumatic mitral stenosis reveals proteins involved in the complement and coagulation cascade.

PubMed

Mukherjee, Somaditya; Jagadeeshaprasad, Mashanipalya G; Banerjee, Tanima; Ghosh, Sudip K; Biswas, Monodeep; Dutta, Santanu; Kulkarni, Mahesh J; Pattari, Sanjib; Bandyopadhyay, Arun

2014-01-01

Rheumatic fever in childhood is the most common cause of Mitral Stenosis in developing countries. The disease is characterized by damaged and deformed mitral valves predisposing them to scarring and narrowing (stenosis) that results in left atrial hypertrophy followed by heart failure. Presently, echocardiography is the main imaging technique used to diagnose Mitral Stenosis. Despite the high prevalence and increased morbidity, no biochemical indicators are available for prediction, diagnosis and management of the disease. Adopting a proteomic approach to study Rheumatic Mitral Stenosis may therefore throw some light in this direction. In our study, we undertook plasma proteomics of human subjects suffering from Rheumatic Mitral Stenosis (n = 6) and Control subjects (n = 6). Six plasma samples, three each from the control and patient groups were pooled and subjected to low abundance protein enrichment. Pooled plasma samples (crude and equalized) were then subjected to in-solution trypsin digestion separately. Digests were analyzed using nano LC-MS(E). Data was acquired with the Protein Lynx Global Server v2.5.2 software and searches made against reviewed Homo sapiens database (UniProtKB) for protein identification. Label-free protein quantification was performed in crude plasma only. A total of 130 proteins spanning 9-192 kDa were identified. Of these 83 proteins were common to both groups and 34 were differentially regulated. Functional annotation of overlapping and differential proteins revealed that more than 50% proteins are involved in inflammation and immune response. This was corroborated by findings from pathway analysis and histopathological studies on excised tissue sections of stenotic mitral valves. Verification of selected protein candidates by immunotechniques in crude plasma corroborated our findings from label-free protein quantification. We propose that this protein profile of blood plasma, or any of the individual proteins, could serve as

A Mobile Automated Tomographic Gamma Scanning System - 13231

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kirkpatrick, J.M.; LeBlanc, P.J.; Nakazawa, D.

2013-07-01

Canberra Industries have recently designed and built a new automated Tomographic Gamma Scanning (TGS) system for mobile deployment. The TGS technique combines high-resolution gamma spectroscopy with low spatial resolution 3-dimensional image reconstruction to provide increased accuracy over traditional approaches for the assay of non-uniform source distributions in low-to medium-density, non-heterogeneous matrices. Originally pioneered by R. Estep at Los Alamos National Laboratory (LANL), the TGS method has been further developed and commercialized by Canberra Industries in recent years. The present system advances the state of the art on several fronts: it is designed to be housed in a standard cargo transportmore » container for ease of transport, allowing waste characterization at multiple facilities under the purview of a single operator. Conveyor feed, drum rotator, and detector and collimator positioning mechanisms operated by programmable logic control (PLC) allow automated batch mode operation. The variable geometry settings can accommodate a wide range of waste packaging, including but not limited to standard 220 liter drums, 380 liter overpack drums, and smaller 20 liter cans. A 20 mCi Eu-152 transmission source provides attenuation corrections for drum matrices up to 1 g/cm{sup 3} in TGS mode; the system can be operated in Segmented Gamma Scanning (SGS) mode to measure higher density drums. To support TGS assays at higher densities, the source shield is sufficient to house an alternate Co-60 transmission source of higher activity, up to 250 mCi. An automated shutter and attenuator assembly is provided for operating the system with a dual intensity transmission source. The system's 1500 kg capacity rotator turntable can handle heavy containers such as concrete lined 380 liter overpack drums. Finally, data acquisition utilizes Canberra's Broad Energy Germanium (BEGE) detector and Lynx MCA, with 32 k channels, providing better than 0.1 ke

Medium-Sized Mammals around a Radioactive Liquid Waste Lagoon at Los Alamos National Laboratory: Uptake of Contaminants and Evaluation of Radio-Frequency Identification Technology

DOE Office of Scientific and Technical Information (OSTI.GOV)

Leslie A. Hansen; Phil R. Fresquez; Rhonda J. Robinson

1999-11-01

Use of a radioactive liquid waste lagoon by medium-sized mammals and levels of tritium, other selected radionuclides, and metals in biological tissues of the animals were documented at Technical Area 53 (TA-53) of Los Alamos National Laboratory during 1997 and 1998. Rock squirrel (Spermophilus variegates), raccoon (Procyon lotor), striped skunk (Mephitis mephitis), and bobcat (Lynx rufus) were captured at TA-53 and at a control site on the Santa Fe National Forest. Captured animals were anesthetized and marked with radio-frequency identification (RFD) tags and/or ear tags. We collected urine and hair samples for tritium and metals (aluminum, antimony, arsenic, barium, beryllium,more » cadmium, chromium, copper, lead, mercury, nickel, selenium, silver, and thallium) analyses, respectively. In addition, muscle and bone samples from two rock squirrels collected from each of TA-53, perimeter, and regional background sites were tested for tritium, {sup 137}Cs, {sup 90}Sr, {sup 238}Pu, {sup 239,240}Pu, {sup 241}Am, and total uranium. Animals at TA-53 were monitored entering and leaving the lagoon area using a RFID monitor to read identification numbers from the RFID tags of marked animals and a separate camera system to photograph all animals passing through the monitor. Cottontail rabbit (Sylvilagus spp.), rock squirrel, and raccoon were the species most frequently photographed going through the RFID monitor. Less than half of all marked animals in the lagoon area were detected using the lagoon. Male and female rock squirrels from the lagoon area had significantly higher tritium concentrations compared to rock squirrels from the control area. Metals tested were not significantly higher in rock squirrels from TA-53, although there was a trend toward increased levels of lead in some individuals at TA-53. Muscle and bone samples from squirrels in the lagoon area appeared to have higher levels of tritium, total uranium, and {sup 137}Cs than samples collected from

Acceptability of residential development in a regional landscape: Potential effects on wildlife occupancy patterns

USGS Publications Warehouse

Bettigole, Charles A.; Donovan, Therese; Manning, Robert; Austin, John; Long, Robert

2014-01-01

The conversion of natural lands to developed uses may pose the single greatest human threat to global terrestrial biodiversity. Continued human growth and development over the next century will further exacerbate these effects of habitat loss and fragmentation. Natural resource managers are tasked with managing wildlife as a public trust, yet often have little say in land use decisions. Generally speaking, decision makers could benefit from an understanding of what different regulations mean in terms of wildlife distribution. In a previous paper (Bettigole et al., 2013), we surveyed town residents throughout Vermont to measure how respondents feel about a range of development levels within their town boundaries. We estimated the “social carrying capacity for development” – orSKd – for 251 towns in Vermont. SKd provides an estimate of the level of developed land cover classes that town residents deem “acceptable” within their town boundaries. In this paper, we design a framework for linking the town-specific SKd estimates with the wildlife distribution patterns for three wide-ranging mammalian species: American black bear (Ursus americanus), fisher (Martes pennanti), and bobcat (Lynx rufus). We simulated landscape conditions at SKd for each town in Vermont, and then used existing occupancy models for the three target species to spatially map and compare occupancy rates in the baseline year 2000 with occupancy rates at SKd. With nearly 90% of Vermont towns willing to increase developed landcover classes within town boundaries compared to baseline levels, significant state-wide changes in occupancy rates were predicted for all three focal species. Average occupancy rates declined by −15.9% and −3.1% for black bear and bobcats, respectively. Average occupancy rates for fisher increased by 9.0%. This study provides a method for linking development standards within a town with wildlife occurrence. Across towns, the methodology spatially identifies

Estimating landscape carrying capacity through maximum clique analysis

USGS Publications Warehouse

Donovan, Therese; Warrington, Greg; Schwenk, W. Scott; Dinitz, Jeffrey H.

2012-01-01

Habitat suitability (HS) maps are widely used tools in wildlife science and establish a link between wildlife populations and landscape pattern. Although HS maps spatially depict the distribution of optimal resources for a species, they do not reveal the population size a landscape is capable of supporting--information that is often crucial for decision makers and managers. We used a new approach, "maximum clique analysis," to demonstrate how HS maps for territorial species can be used to estimate the carrying capacity, N(k), of a given landscape. We estimated the N(k) of Ovenbirds (Seiurus aurocapillus) and bobcats (Lynx rufus) in an 1153-km2 study area in Vermont, USA. These two species were selected to highlight different approaches in building an HS map as well as computational challenges that can arise in a maximum clique analysis. We derived 30-m2 HS maps for each species via occupancy modeling (Ovenbird) and by resource utilization modeling (bobcats). For each species, we then identified all pixel locations on the map (points) that had sufficient resources in the surrounding area to maintain a home range (termed a "pseudo-home range"). These locations were converted to a mathematical graph, where any two points were linked if two pseudo-home ranges could exist on the landscape without violating territory boundaries. We used the program Cliquer to find the maximum clique of each graph. The resulting estimates of N(k) = 236 Ovenbirds and N(k) = 42 female bobcats were sensitive to different assumptions and model inputs. Estimates of N(k) via alternative, ad hoc methods were 1.4 to > 30 times greater than the maximum clique estimate, suggesting that the alternative results may be upwardly biased. The maximum clique analysis was computationally intensive but could handle problems with < 1500 total pseudo-home ranges (points). Given present computational constraints, it is best suited for species that occur in clustered distributions (where the problem can be

Clinical and molecular epidemiology of veterinary blastomycosis in Wisconsin.

PubMed

Anderson, Jennifer L; Sloss, Brian L; Meece, Jennifer K

2013-04-22

Several studies have shown that Blastomyces dermatitidis, the etiologic agent of blastomycosis, is a genetically diverse pathogen. Blastomycosis is a significant health issue in humans and other mammals. Veterinary and human isolates matched with epidemiological case data from the same geographic area and time period were used to determine: (i) if differences in genetic diversity and structure exist between clinical veterinary and human isolates of B. dermatitidis and (ii) if comparable epidemiologic features differ among veterinary and human blastomycosis cases. Genetic typing of 301 clinical B. dermatitidis isolates produced 196 haplotypes (59 unique to veterinary isolates, 134 unique to human isolates, and 3 shared between canine and human isolates). Private allelic richness was higher in veterinary (median 2.27) compared to human isolates (median 1.14) (p = 0.005). Concordant with previous studies, two distinct genetic groups were identified among all isolates. Genetic group assignment was different between human and veterinary isolates (p < 0.001), with more veterinary isolates assigned to Group 2. The mean age of dogs diagnosed with blastomycosis was 6 years. Thirty cases were in male dogs (52%) and 24 were females (41%). The breed of dog was able to be retrieved in 38 of 58 cases with 19 (50%) being sporting breeds. Three of four felines infected with blastomycosis were domestic shorthair males between ages 6-12, and presented with disseminated disease. The other was a lynx with pulmonary disease. The equine isolate was from an 11-year-old male Halflinger with disseminated disease. Disseminated disease was reported more often in veterinary (62%) than human cases (19%) (p < 0.001). Isolates from all hosts clustered largely into previously identified genetic groups, with 3 haplotypes being shared between human and canine isolates confirming that B. dermatitidis isolates capable of infecting both species occur in nature. Allelic diversity measures trended

Jasmonate and ethylene dependent defence gene expression and suppression of fungal virulence factors: two essential mechanisms of Fusarium head blight resistance in wheat?

PubMed Central

2012-01-01

Background Fusarium head blight (FHB) caused by Fusarium species like F. graminearum is a devastating disease of wheat (Triticum aestivum) worldwide. Mycotoxins such as deoxynivalenol produced by the fungus affect plant and animal health, and cause significant reductions of grain yield and quality. Resistant varieties are the only effective way to control this disease, but the molecular events leading to FHB resistance are still poorly understood. Transcriptional profiling was conducted for the winter wheat cultivars Dream (moderately resistant) and Lynx (susceptible). The gene expressions at 32 and 72 h after inoculation with Fusarium were used to trace possible defence mechanisms and associated genes. A comparative qPCR was carried out for selected genes to analyse the respective expression patterns in the resistant cultivars Dream and Sumai 3 (Chinese spring wheat). Results Among 2,169 differentially expressed genes, two putative main defence mechanisms were found in the FHB-resistant Dream cultivar. Both are defined base on their specific mode of resistance. A non-specific mechanism was based on several defence genes probably induced by jasmonate and ethylene signalling, including lipid-transfer protein, thionin, defensin and GDSL-like lipase genes. Additionally, defence-related genes encoding jasmonate-regulated proteins were up-regulated in response to FHB. Another mechanism based on the targeted suppression of essential Fusarium virulence factors comprising proteases and mycotoxins was found to be an essential, induced defence of general relevance in wheat. Moreover, similar inductions upon fungal infection were frequently observed among FHB-responsive genes of both mechanisms in the cultivars Dream and Sumai 3. Conclusions Especially ABC transporter, UDP-glucosyltransferase, protease and protease inhibitor genes associated with the defence mechanism against fungal virulence factors are apparently active in different resistant genetic backgrounds

SU-F-T-153: Experimental Validation and Calculation Benchmark for a Commercial Monte Carlo Pencil Beam Scanning Proton Therapy Treatment Planning System in Water

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lin, L; Huang, S; Kang, M

Purpose: Eclipse proton Monte Carlo AcurosPT 13.7 was commissioned and experimentally validated for an IBA dedicated PBS nozzle in water. Topas 1.3 was used to isolate the cause of differences in output and penumbra between simulation and experiment. Methods: The spot profiles were measured in air at five locations using Lynx. PTW-34070 Bragg peak chamber (Freiburg, Germany) was used to collect the relative integral Bragg peak for 15 proton energies from 100 MeV to 225 MeV. The phase space parameters (σx, σθ, ρxθ) number of protons per MU, energy spread and calculated mean energy provided by AcurosPT were identically implementedmore » into Topas. The absolute dose, profiles and field size factors measured using ionization chamber arrays were compared with both AcurosPT and Topas. Results: The beam spot size, σx, and the angular spread, σθ, in air were both energy-dependent: in particular, the spot size in air at isocentre ranged from 2.8 to 5.3 mm, and the angular spread ranged from 2.7 mrad to 6 mrad. The number of protons per MU increased from ∼9E7 at 100 MeV to ∼1.5E8 at 225 MeV. Both AcurosPT and TOPAS agree with experiment within 2 mm penumbra difference or 3% dose difference for scenarios including central axis depth dose and profiles at two depths in multi-spot square fields, from 40 to 200 mm, for all the investigated single-energy and multi-energy beams, indicating clinically acceptable source model and radiation transport algorithm in water. Conclusion: By comparing measured data and TOPAS simulation using the same source model, the AcurosPT 13.7 was validated in water within 2 mm penumbra difference or 3% dose difference. Benchmarks versus an independent Monte Carlo code are recommended to study the agreement in output, filed size factors and penumbra differences. This project is partially supported by the Varian grant under the master agreement between University of Pennsylvania and Varian.« less

Chaos modeling applied to environmental dynamics from in situ and satellite observational time series

NASA Astrophysics Data System (ADS)

Mangiarotti, S.

2016-12-01

The idea that a low-dimensional system can be simultaneously deterministic and unpredictable at long term was clearly understood by Henri Poincaré at the end of the 19thcentury [1]. It is however several decades later that a system providing a straightforward illustration of such behavior was obtained by Lorenz in 1963 [2]. Such type of behavior is now called chaotic. The idea that dynamics can be chaotic deeply modifies our knowledge of the world and has important incidences for modeling, analyzing and characterizing real world behaviors. Important developments were performed since the 1980's for modeling chaos directly from observational data [3-6]. Until the early 2000s, chaotic systems of Ordinary Differential Equations were retrieved exclusively for theoretical systems or for lab experimentations. The first global model obtained under real world conditions was for the population cycles of Canadian Lynx [7] in 2006. Thanks to further developments [6], numerous other global models were recently obtained for several natural and environmental real systems, directly from observational data. In the present talk, the global modeling technique will be first introduced. Then, several of the chaotic global models obtained from in situ and satellite environmental data will be presented. The following domains will be considered: cereal crops cycles in semi-arid regions [8], karstic sources discharge under various climatic conditions, snow surface cycles [9], the historical Bombay plague epidemic that broke out in 1896 and its coupling to rats epizootics [10], and the recent epidemic of Ebola virus disease in West Africa (2014-2016). [1] Poincaré, Les Méthodes Nouvelles de la Mécanique Céleste (Gauthier-Vilard, Paris, 1899), Tome III. [2] E.N. Lorenz, J. Atmos. Sci., 20,130-141 (1963). [3] J. P. Crutchfield and B. S. McNamara, Complex Syst. 1, 417-452 (1987). [4] G. Gouesbet and C. Letellier, Phys. Rev. E 49, 4955-4972 (1994). [5] C. Letellier et al., Chaos 19

Hubble Spies a UFO

NASA Image and Video Library

2017-12-08

The Hubble Space Telescope has spotted a UFO — well, the UFO Galaxy, to be precise. NGC 2683 is a spiral galaxy seen almost edge-on, giving it the shape of a classic science fiction spaceship. This is why the astronomers at the Astronaut Memorial Planetarium and Observatory gave it this attention-grabbing nickname. While a bird’s eye view lets us see the detailed structure of a galaxy (such as this Hubble image of a barred spiral), a side-on view has its own perks. In particular, it gives astronomers a great opportunity to see the delicate dusty lanes of the spiral arms silhouetted against the golden haze of the galaxy’s core. In addition, brilliant clusters of young blue stars shine scattered throughout the disc, mapping the galaxy’s star-forming regions. Perhaps surprisingly, side-on views of galaxies like this one do not prevent astronomers from deducing their structures. Studies of the properties of the light coming from NGC 2683 suggest that this is a barred spiral galaxy, even though the angle we see it at does not let us see this directly. NGC 2683, discovered on 5 February 1788 by the famous astronomer William Herschel, lies in the Northern constellation of Lynx. A constellation named not because of its resemblance to the feline animal, but because it is fairly faint, requiring the “sensitive eyes of a cat” to discern it. And when you manage to get a look at it, you’ll find treasures like this, making it well worth the effort. This image is produced from two adjacent fields observed in visible and infrared light by Hubble’s Advanced Camera for Surveys. A narrow strip which appears slightly blurred and crosses most the image horizontally is a result of a gap between Hubble’s detectors. This strip has been patched using images from observations of the galaxy made by ground-based telescopes, which show significantly less detail. The field of view is approximately 6.5 by 3.3 arcminutes. Credit: ESA/Hubble & NASA NASA image use policy. NASA

[Distribution patterns of wild felids (Carnivora: Felidae) in the dry tropics of Central-Western Mexico].

PubMed

Charre-Medellín, Juan Felipe; Monterrubio-Rico, Tiberio Cesar; Guido-Lemus, Daniel; Mendoza, Eduardo

2015-09-01

The Michoacán state is characterized by the existence of important environmental heterogeneity in terms of climate, topography and types of vegetation, which includes the worldwide endangered tropical dry forest. Some reports indicating the presence of the six species of felids occurring in Mexico in this region have been made; however, evidence to support these reports is scant, and filling this lack of information is particularly critical in the case of threatened species or habitats. The aim of this study was to systematize and analyze data distribution patterns of felids in the state of Michoacán, in the Central-Western Mexico. We conducted a review of literature and databases to compile species presence records in the study region. Moreover, we analyzed data obtained from ten years of field work conducted in the region, in which complementary methods (detection of direct and indirect evidence of species occurrence along transects, camera-trapping and interviews to local people) were applied to detect the presence of felid species. We compiled a total of 29 presence records of felids in the region from our review. Additionally, field work, which accumulated 1,107.5 km of walked transects, and 8 699 camera-trap days, produced 672 records of species presence. Lynx rufus was the species with the lowest number of records and the most restricted distribution. In contrast, the species with the greatest number of records was Leoparduspardalis (n = 343). In general, 89% of felids records occurred below 1,000 masl. Overall mean annual temperature of presence records was 24 °C and mean annual precipitation was 1,040 mm. The species whose presence records showed the most distinctive pattern, in terms of temperature and precipitation associated, was L. rufus (15.8 ± 1.3°C and 941 ± 171 mm). Results of a cluster analysis showed that areas supporting different combinations of eco-regions and types of vegetation could be grouped in five clusters having different

A Test Stand to Characterize and Contribute to the Development of DEPFET X-ray Detectors

NASA Astrophysics Data System (ADS)

Falcone, Abe

The field of X-ray astronomy is currently looking forward to several new missions (e.g Athena, BeppiColumbo, and IXPE which is a new SMEX polarimeter), and there is the possibility of a flag-ship mission (e.g. the Lynx X-ray Surveyor) and/or other SMEX through probe class missions in the long-term future with many mission concepts being developed (e.g. ARCUS). The X-ray detec-tors for these future missions must be developed to suitable maturity to be proposed for flight, and expertise operating the newest versions of the detectors must be acquired by potential mis-sion designers and proposers. There are several silicon X-ray imaging active pixel sensor (APS) detectors being developed at this time (hybrid CMOS, monolithic CMOS, and DEPFETs), and each of these have their own advantages and levels of maturity, while they all provide enhanced radia-tion hardness, lower power operation, and versatile readout modes. Of the new APS X-ray detec-tors being developed, the DEPleted p-channel Field Effect Transistors (DEPFETs) have exhibited the best noise performance to-date. While they do require larger pixel structures than their com-petitors, the low noise performance of these detectors makes them an excellent choice for many mission applications (e.g. they will be launched on 2 ESA missions, Athena & BepiColumbo), and their further development could benefit other missions, particularly future missions that might be led by NASA and US scientists. Up until now, the development of these detectors has been lim-ited to only two groups located in Germany; one group is at Max Planck Institute and the other is PNSensors which is comprised of engineers and scientists that previously led the DEPFET design work at Max Planck. We propose to engage one of these groups in order to: (a) acquire newly de-signed test DEPFET detectors built by PNSensor, through a very-low-cost arrangement, (b) build a test stand that can operate these detectors and gain valuable experience running them in

Microhabitat selection by bobcats in the badlands and Black Hills of South Dakota, USA: a comparison of Prairie and forested habitats

USGS Publications Warehouse

Mosby, Cory E.; Grovenburg, Troy W.; Klaver, Robert W.; Schroeder, Greg M.; Schmitz, Lowell E.; Jenks, Jonathan A.

2012-01-01

An understanding of habitat selection is important for management of wildlife species. Although bobcat (Lynx rufus) resource selection has been addressed in many regions of the United States, little work has been conducted in the Northern Great Plains. From 2006–2008 we captured and radiocollared 20 bobcats in the Badlands (n = 10) and Black Hills (n = 10) regions of South Dakota. During the summers of 2008 and 2009 we collected habitat measurements at 349 (176 Badlands, 176 Black Hills) bobcat locations and 321 (148 Badlands, 173 Black Hills) random sites. Microhabitat characteristics at bobcat use sites varied with region (P < 0.001) and sex of bobcat (P < 0.001). Percent slope, shrub, low cover, medium cover, and total cover were greater (P ≤ 0.017) at bobcat locations in the Black Hills than in the Badlands whereas distance to drainage was greater (P < 0.001) at locations in the Badlands than in the Black Hills. In the Badlands, male bobcat locations were closer (P ≤ 0.002) to prairie dog towns and drainages and had greater (P < 0.05) percent forbs and forb height than random sites, whereas females were closer to badland formations (P < 0.001) than random sites. In the Black Hills, male locations were at greater elevation (P < 0.001) and female locations were characterized by greater (P ≤ 0.02) grass height, shrub height, low cover, and total cover than random sites. Logistic regression indicated that microhabitat selection was similar between study areas; odds ratios indicated that odds of bobcat use increased by 0.998 (95% CI = 0.997–0.999) per 1 m increase in distance to drainage, 0.986 (95% CI = 0.978–0.993) per 1.0% increase in grass cover, by 1.024 (95% CI = 1.011–1.036) per 1 cm increase in grass height, by 1.013 (95% CI = 1.003–1.024) per 1% increase in forb cover, and by 1.028 (95% CI = 1.017–1.039) per 1% increase in medium cover. Our results were similar to other bobcat microhabitat selection studies, where bobcat relocations were

Feline immunodeficiency virus cross-species transmission: Implications for emergence of new lentiviral infections

USGS Publications Warehouse

Lee, Justin; Malmberg, Jennifer L.; Wood, Britta A.; Hladky, Sahaja; Troyer, Ryan; Roelke, Melody; Cunningham, Mark W.; McBride, Roy; Vickers, Winston; Boyce, Walter; Boydston, Erin E.; Serieys, Laurel E.K.; Riley, Seth P D; Crooks, Kevin R.; VandeWoude, Sue

2016-01-01

Owing to a complex history of host-parasite coevolution, lentiviruses exhibit a high degree of species specificity. Given the well-documented viral archeology of HIV emergence following human exposures to SIV, understanding processes that promote successful cross-species lentiviral transmissions is highly relevant. We have previously reported natural cross-species transmission of a subtype of feline immunodeficiency virus, puma lentivirus A (PLVA), between bobcats (Lynx rufus) and mountain lions (Puma concolor) in a small number of animals in California and Florida. In this study we investigate host-specific selection pressures, within-host viral fitness, and inter- vs. intra-species transmission patterns among a larger collection of PLV isolates from free-ranging bobcats and mountain lions. Analysis of proviral and viral RNA levels demonstrates that PLVA fitness is severely restricted in mountain lions compared to bobcats. We document evidence of diversifying selection in three of six PLVA genomes from mountain lions, but did not detect selection among twenty PLVA isolates from bobcats. These findings support that PLVA is a bobcat-adapted virus, which is less fit in mountain lions and under intense selection pressure in the novel host. Ancestral reconstruction of transmission events reveals intraspecific PLVA transmission has occurred among panthers (Puma concolor coryi) in Florida following initial cross-species infection from bobcats. In contrast, interspecific transmission from bobcats to mountain lions predominates in California. These findings document outcomes of cross-species lentiviral transmission events among felids that compare to emergence of HIV from nonhuman primates.IMPORTANCE Cross-species transmission episodes can be singular, dead-end events or can result in viral replication and spread in the new species. The factors that determine which outcome will occur are complex, and the risk of new virus emergence is therefore difficult to predict. Here

Are pumas subordinate carnivores, and does it matter?

PubMed Central

Kusler, Anna

2018-01-01

Background Interspecific competition affects species fitness, community assemblages and structure, and the geographic distributions of species. Established dominance hierarchies among species mitigate the need for fighting and contribute to the realized niche for subordinate species. This is especially important for apex predators, many of which simultaneous contend with the costs of competition with more dominant species and the costs associated with human hunting and lethal management. Methods Pumas are a widespread solitary felid heavily regulated through hunting to reduce conflicts with livestock and people. Across their range, pumas overlap with six apex predators (gray wolf, grizzly bear, American black bear, jaguar, coyote, maned wolf), two of which (gray wolf, grizzly bear) are currently expanding in North America following recovery efforts. We conducted a literature search to assess whether pumas were subordinate or dominant with sympatric apex predators, as well as with three felid mesocarnivores with similar ecology (ocelot, bobcat, Canada lynx). We also conducted an analysis of the spatial distributions of pumas and their dominant sympatric competitors to estimate in what part of their range, pumas are dominant versus subordinate. Results We used 64 sources to assess dominance among pumas and other apex predators, and 13 sources to assess their relationships with felid mesocarnivores. Evidence suggested that wolves, grizzly bears, black bears, and jaguars are dominant over pumas, but that pumas are dominant over coyotes and maned wolves. Evidence suggested that pumas are also dominant over all three felid mesocarnivores with which they share range. More broadly, pumas are subordinate to at least one other apex carnivore in 10,799,252 (47.5%) of their 22,735,268 km2 range across North and South America. Discussion Subordinate pumas change their habitat use, suffer displacement at food sources, likely experience increased energetic demands from harassment

Feline Immunodeficiency Virus Cross-Species Transmission: Implications for Emergence of New Lentiviral Infections.

PubMed

Lee, Justin; Malmberg, Jennifer L; Wood, Britta A; Hladky, Sahaja; Troyer, Ryan; Roelke, Melody; Cunningham, Mark; McBride, Roy; Vickers, Winston; Boyce, Walter; Boydston, Erin; Serieys, Laurel; Riley, Seth; Crooks, Kevin; VandeWoude, Sue

2017-03-01

Owing to a complex history of host-parasite coevolution, lentiviruses exhibit a high degree of species specificity. Given the well-documented viral archeology of human immunodeficiency virus (HIV) emergence following human exposures to simian immunodeficiency virus (SIV), an understanding of processes that promote successful cross-species lentiviral transmissions is highly relevant. We previously reported natural cross-species transmission of a subtype of feline immunodeficiency virus, puma lentivirus A (PLVA), between bobcats ( Lynx rufus ) and mountain lions ( Puma concolor ) for a small number of animals in California and Florida. In this study, we investigate host-specific selection pressures, within-host viral fitness, and inter- versus intraspecies transmission patterns among a larger collection of PLV isolates from free-ranging bobcats and mountain lions. Analyses of proviral and viral RNA levels demonstrate that PLVA fitness is severely restricted in mountain lions compared to that in bobcats. We document evidence of diversifying selection in three of six PLVA genomes from mountain lions, but we did not detect selection among 20 PLVA isolates from bobcats. These findings support the hypothesis that PLVA is a bobcat-adapted virus which is less fit in mountain lions and under intense selection pressure in the novel host. Ancestral reconstruction of transmission events reveals that intraspecific PLVA transmission has occurred among panthers ( Puma concolor coryi ) in Florida following the initial cross-species infection from bobcats. In contrast, interspecific transmission from bobcats to mountain lions predominates in California. These findings document outcomes of cross-species lentiviral transmission events among felids that compare to the emergence of HIV from nonhuman primates. IMPORTANCE Cross-species transmission episodes can be singular, dead-end events or can result in viral replication and spread in the new species. The factors that determine which

Feline Immunodeficiency Virus Cross-Species Transmission: Implications for Emergence of New Lentiviral Infections

PubMed Central

Lee, Justin; Malmberg, Jennifer L.; Wood, Britta A.; Hladky, Sahaja; Troyer, Ryan; Roelke, Melody; Cunningham, Mark; McBride, Roy; Vickers, Winston; Boyce, Walter; Boydston, Erin; Serieys, Laurel; Riley, Seth; Crooks, Kevin

2016-01-01

ABSTRACT Owing to a complex history of host-parasite coevolution, lentiviruses exhibit a high degree of species specificity. Given the well-documented viral archeology of human immunodeficiency virus (HIV) emergence following human exposures to simian immunodeficiency virus (SIV), an understanding of processes that promote successful cross-species lentiviral transmissions is highly relevant. We previously reported natural cross-species transmission of a subtype of feline immunodeficiency virus, puma lentivirus A (PLVA), between bobcats (Lynx rufus) and mountain lions (Puma concolor) for a small number of animals in California and Florida. In this study, we investigate host-specific selection pressures, within-host viral fitness, and inter- versus intraspecies transmission patterns among a larger collection of PLV isolates from free-ranging bobcats and mountain lions. Analyses of proviral and viral RNA levels demonstrate that PLVA fitness is severely restricted in mountain lions compared to that in bobcats. We document evidence of diversifying selection in three of six PLVA genomes from mountain lions, but we did not detect selection among 20 PLVA isolates from bobcats. These findings support the hypothesis that PLVA is a bobcat-adapted virus which is less fit in mountain lions and under intense selection pressure in the novel host. Ancestral reconstruction of transmission events reveals that intraspecific PLVA transmission has occurred among panthers (Puma concolor coryi) in Florida following the initial cross-species infection from bobcats. In contrast, interspecific transmission from bobcats to mountain lions predominates in California. These findings document outcomes of cross-species lentiviral transmission events among felids that compare to the emergence of HIV from nonhuman primates. IMPORTANCE Cross-species transmission episodes can be singular, dead-end events or can result in viral replication and spread in the new species. The factors that determine

Are pumas subordinate carnivores, and does it matter?

PubMed

Elbroch, L Mark; Kusler, Anna

2018-01-01

Interspecific competition affects species fitness, community assemblages and structure, and the geographic distributions of species. Established dominance hierarchies among species mitigate the need for fighting and contribute to the realized niche for subordinate species. This is especially important for apex predators, many of which simultaneous contend with the costs of competition with more dominant species and the costs associated with human hunting and lethal management. Pumas are a widespread solitary felid heavily regulated through hunting to reduce conflicts with livestock and people. Across their range, pumas overlap with six apex predators (gray wolf, grizzly bear, American black bear, jaguar, coyote, maned wolf), two of which (gray wolf, grizzly bear) are currently expanding in North America following recovery efforts. We conducted a literature search to assess whether pumas were subordinate or dominant with sympatric apex predators, as well as with three felid mesocarnivores with similar ecology (ocelot, bobcat, Canada lynx). We also conducted an analysis of the spatial distributions of pumas and their dominant sympatric competitors to estimate in what part of their range, pumas are dominant versus subordinate. We used 64 sources to assess dominance among pumas and other apex predators, and 13 sources to assess their relationships with felid mesocarnivores. Evidence suggested that wolves, grizzly bears, black bears, and jaguars are dominant over pumas, but that pumas are dominant over coyotes and maned wolves. Evidence suggested that pumas are also dominant over all three felid mesocarnivores with which they share range. More broadly, pumas are subordinate to at least one other apex carnivore in 10,799,252 (47.5%) of their 22,735,268 km 2 range across North and South America. Subordinate pumas change their habitat use, suffer displacement at food sources, likely experience increased energetic demands from harassment, exhibit increased starvation, and

Seroepidemiology of Toxoplasma gondii in zoo animals in selected zoos in the midwestern United States.

PubMed

de Camps, Silvia; Dubey, J P; Saville, W J A

2008-06-01

Toxoplasma gondii infections in zoo animals are of interest because many captive animals die of clinical toxoplasmosis and because of the potential risk of exposure of children and elderly to T. gondii oocysts excreted by cats in the zoos. Seroprevalence of T. gondii antibodies in wild zoo felids, highly susceptible zoo species, and feral cats from 8 zoos of the midwestern United States was determined by using the modified agglutination test (MAT). A titer of 1:25 was considered indicative of T. gondii exposure. Among wild felids, antibodies to T. gondii were found in 6 (27.3%) of 22 cheetahs (Acynonyx jubatus jubatus), 2 of 4 African lynx (Caracal caracal), 1 of 7 clouded leopards (Neofelis nebulosa), 1 of 5 Pallas cats (Otocolobus manul), 12 (54.5%) of 22 African lions (Panthera leo), 1 of 1 jaguar (Panthera onca), 1 of 1 Amur leopard (Panthera pardus orientalis), 1 of 1 Persian leopard (Panthera pardus saxicolor), 5 (27.8%) of 18 Amur tigers (Panthera tigris altaica), 1 of 4 fishing cats (Prionailurus viverrinus), 3 of 6 pumas (Puma concolor), 2 of 2 Texas pumas (Puma concolor stanleyana), and 5 (35.7%) of 14 snow leopards (Uncia uncia). Antibodies were found in 10 of 34 feral domestic cats (Felis domesticus) trapped in 3 zoos. Toxoplasma gondii oocysts were not found in any of the 78 fecal samples from wild and domestic cats. Among the macropods, antibodies were detected in 1 of 3 Dama wallabies (Macropus eugenii), 1 of 1 western grey kangaroo (Macropus fuliginosus), 1 of 2 wallaroos (Macropus robustus), 6 of 8 Bennett's wallabies (Macropus rufogriseus), 21 (61.8%) of 34 red kangaroos (Macropus rufus), and 1 of 1 dusky pademelon (Thylogale brunii). Among prosimians, antibodies were detected in 1 of 3 blue-eyed black lemurs (Eulemur macaco flavifrons), 1 of 21 ring-tailed lemurs (Lemur catta), 2 of 9 red-ruffed lemurs (Varecia variegata rubra), and 2 of 4 black- and white-ruffed lemurs (Varecia variegata variegata). Among the avian species tested, 2 of 3 bald

Black-tailed and white-tailed jackrabbits in the American West: History, ecology, ecological significance, and survey methods

USGS Publications Warehouse

Simes, Matthew; Longshore, Kathleen M.; Nussear, Kenneth E.; Beatty, Greg L.; Brown, David E.; Esque, Todd C.

2015-01-01

Across the western United States, Leporidae are the most important prey item in the diet of Golden Eagles (Aquila chrysaetos). Leporids inhabiting the western United States include black-tailed (Lepus californicus) and white-tailed jackrabbits (Lepus townsendii) and various species of cottontail rabbit (Sylvilagus spp.). Jackrabbits (Lepus spp.) are particularly important components of the ecological and economic landscape of western North America because their abundance influences the reproductive success and population trends of predators such as coyotes (Canis latrans), bobcats (Lynx rufus), and a number of raptor species. Here, we review literature pertaining to black-tailed and white-tailed jackrabbits comprising over 170 published journal articles, notes, technical reports, conference proceedings, academic theses and dissertations, and other sources dating from the late 19th century to the present. Our goal is to present information to assist those in research and management, particularly with regard to protected raptor species (e.g., Golden Eagles), mammalian predators, and ecological monitoring. We classified literature sources as (1) general information on jackrabbit species, (2) black-tailed or (3) white-tailed jackrabbit ecology and natural history, or (4) survey methods. These categories, especially 2, 3, and 4, were further subdivided as appropriate. The review also produced several tables on population trends, food habits, densities within various habitats, and jackrabbit growth and development. Black-tailed and white-tailed jackrabbits are ecologically similar in general behaviors, use of forms, parasites, and food habits, and they are prey to similar predators; but they differ in their preferred habitats. While the black-tailed jackrabbit inhabits agricultural land, deserts, and shrublands, the white-tailed jackrabbit is associated with prairies, alpine tundra, and sagebrush-steppe. Frequently considered abundant, jackrabbit numbers in western North

Palmetto Academy: Undergraduates Exploring and Communicating the Multidisciplinary Nature of STEM

NASA Astrophysics Data System (ADS)

Hall, C.; Ali, A.; Runyon, C. J.; Colgan, M. W.

2012-12-01

One of the pillars of the US economy is a well-trained Science, Technology, Engineering and Math (STEM) workforce (National Academy of Sciences, 2007). The number of students choosing to study science and engineering has taken a dramatic decline. The percentage of those degrees conferred in SC was substantially lower than the national average and the percentage of those occupations within the SC workforce also falls below the national average, supporting the need for engaging and educational STEM programs. The NASA South Carolina Space Grant Consortium's Palmetto Research Academy (PRA) program is an immersive and integrated multidisciplinary exposure and training for undergraduate students with various backgrounds and career aspirations of critical importance to the Nation. This program offers exciting and inspiring hands-on research experiences that are aligned with NASA missions. The PRA advances NASA's research interest in areas such as aeronautics, biomedical science, sun-earth connections, planetary and Earth science. The PRA helps to develop the STEM workforce in STEM disciplines, a necessity in South Carolina. In addition, the PRA incorporates an education/outreach component, where the students engage secondary educators and students in NASA scientific and technical expertise. In 2012, the PRA had 10 research projects across the state in disciplines of mechanical and chemical engineering, bioengineering, chemistry, biogeooptical sciences, physics and astronomy and biomedical sciences. 18 undergraduates and 2 technical college students participated in authentic hands-on research mentored by leading scientists and engineers throughout the state. Examples projects include: A) Development of a series of astronomical telescopes to be mounted on a commercial human-tended suborbital rockets. The students built the instrument, including the power system and the mechanical interface, and performed function and fit testing on the XCOR Aerospace Lynx vehicle mock-up. B

Restrictions to cross species transmission of lentiviral infection gleaned from studies of FIV

PubMed Central

Troyer, Jennifer; Poss, Mary

2009-01-01

More than 40 species of primates and over 20 species of cats harbor antibodies that sero-react to lentiviral antigens. In nearly all cases where viral genetic analysis has been conducted, each host species is infected with a unique lentivirus. Though lentivirus clades within a species can be substantially divergent, they are typically monophyletic within that species. A notable significant departure from this observation is apparent cross-species transmission of FIV between bobcats (Lynx rufus) and pumas (Puma concolor) in southern California that has occurred at least three times; evidence from one bobcat sequence suggests this cross-over may have also occurred in Florida between bobcats and the endangered Florida panther. Several other isolated reports demonstrate cross-species transmission of FIV isolates among captive animals housed in close proximity, and it is well established that HIV-1 and HIV-2 arose from human contact with SIV-infected nonhuman primates. Using an experimental model, we have determined that domestic cats (Felis catus) are susceptible to FIVs originating from pumas or lions. While infections are initially replicative, and animals seroconvert, within a relatively short period of time circulating virus is reduced to nearly undetectable levels in a majority of animals. This diminution of viral load is proportional to initial viral peak. Although viral reservoirs can be identified in gastrointestinal tissues, most viral genomes recovered peripherally are highly mutated, suggesting that the non-adapted host successfully inhibits normal viral replication, leading to replication incompetent viral progeny. Mechanisms possible for such restriction of cross-species infections in natural settings include: 1. Lack of contact conducive to lentiviral transmission between infected and shedding animals of different species; 2. Lack of suitable receptor repertoire to allow viral entry to susceptible cells of a new species; 3. Cellular machinery in the new

Spectroscopic studies of three Cepheids with high positive pulsation period increments: SZ Cas, BY Cas, and RU Sct

NASA Astrophysics Data System (ADS)

Usenko, I. A.; Klochkova, V. G.

2015-07-01

Three high-resolution spectra have been taken at different times with the 6-m SAO RAS telescope (LYNX and PFES spectrographs) for three Cepheids exhibiting high positive period increments: the small-amplitude (DCEPS) SZ Cas and BY Cas and the classical (DCEP) RU Sct. SZ Cas and RU Sct are members of the Galactic open clusters χ and h Per and Trump 35, respectively. Analysis of the spectra has shown that the interstellar Na I D1 and D2 lines in all objects are considerably stronger than the atmospheric ones and are redshifted in SZ Cas and BY Cas and blushifted in RU Sct. The core of the H α absorption line in BY Cas has an asymmetric knifelike shape, while RU Sct exhibits an intense emission in the blue wing of this line. Such phenomena are observed in long-period Cepheids and bright hypergiants with an extended envelope. In this case, the strong Mg Ib 5183.62 Å and Ba II 5853.67, 6141.713, and 6496.90 Å lines with low χlow in SZ Cas and RU Sct also show characteristic knifelike profiles with an asymmetry in the red region, while the Ba II 4934.095 Å line shows similar profiles in the blue one. The absorption lines of neutral atoms and singly ionized metals with different lowerlevel excitation potentials exhibit different degrees of asymmetry: from a pronounced one with secondary components in BY Cas (similar to those in the small-amplitude Cepheid BG Cru pulsating in the first overtone and having an envelope) to its insignificance or virtual absence in SZ Cas and RU Sct. Analysis of the secular changes in mean T eff determined from photometric color indices and spectra over the last 55 years for these stars has revealed periodic fluctuations of 200 K for SZ Cas and BY Cas and 500 K for RU Sct. For SZ Cas and RU Sct, T eff determined in some years from some color indices show much lower values, which together with the temperature fluctuations can be associated with mass loss and dust formation. Based on these facts, we hypothesize the existence of

Insulin treated diabetes mellitus: causes of death determined from record linkage of population based registers in Leicestershire, UK.

PubMed Central

Raymond, N T; Langley, J D; Goyder, E; Botha, J L; Burden, A C; Hearnshaw, J R

1995-01-01

STUDY OBJECTIVE--Analyses of causes of mortality in people with diabetes using data form death certificates mentioning diabetes provide unreliable estimates of mortality. Under-recording of diabetes as a cause on death certificates has been widely reported, ranging from 15-60%. Using a population based register on people with diabetes and linking data from another source is a viable alternative. Data from the Office of Population Censuses and Surveys (OPCS) are the most acceptable mortality data available for such an exercise, as direct comparison with other published mortality rates is then possible. DESIGN--A locally maintained population-based mortality register and all insulin-treated diabetes mellitus cases notified to the Leicestershire diabetes register (n = 4680) were linked using record linkage software developed in-house (Lynx). This software has been extensively used in a maintenance and update cycle designed to maximise accuracy and minimise duplication and false registration on the diabetes register. Deaths identified were initially coded locally to the International Classification of Diseases, 9th revision (ICD9), and later a linkage was performed to use official OPCS coding. Mortality data identified by the linkage was indirectly standardised using population data for Leicestershire for 1991. Standardised mortality ratios (SMR) were estimated, with 95% confidence intervals. Insulin dependent diabetes (IDDM) was defined as diabetes diagnosed before age 30 years with insulin therapy begun within one year of diagnosis. All other types were considered non-insulin dependent diabetes (NIDDM). Analyses were performed for the whole sample and then for the NIDDM subgroup. Results from these analyses were similar and therefore only whole group analyses are presented. MAIN RESULTS--A total of 370 deaths were identified for the period of 1990-92 inclusive - 56% were in men and 44% in women, median age (range) 71 years (12-94). Approximately 90% of deaths were

Small instrument to volcanic seismic signals

NASA Astrophysics Data System (ADS)

Carreras, Normandino; Gomariz, Spartacus; Manuel, Antoni

2014-05-01

Currently, the presence of volcanoes represents a threat to their local populations, and for this reason, scientific communities invest resources to monitor seismic activity of an area, and to obtain information to identify risk situations. To perform such monitoring, it can use different general purpose acquisition systems commercially available, but these devices do not meet to the specifications of reduced dimensions, low weight, low power consumption and low cost. These features allow the system works in autonomous mode for a long period of time, and it makes easy to be carried and to be installed. In the line of designing a volcanic acquisition system with the previously mentioned specifications, exists the Volcanology Department of CSIC, developers of a system with some of these specifications. The objective of this work is to improve the energy consumption requirements of the previous system, providing three channels of data acquisition and with the possibility to transmit data acquisition via radio frequency to a base station, allowing operation it in remote mode. The developed acquisition system consists of three very low-power acquisition modules of Texas Instruments (ADS1246), and this is designed to capture information of the three coordinate axes. A microprocessor also of Texas Instruments (MSP430F5438) is used to work in low-power, due to it is ready to run this consumption and also takes advantage the power save mode in certain moments when system is not working. This system is configurable by serial port, and it has a SD memory to storage data. Contrast to the previous system, it has a RF communication module incorporated specially to work in remote mode of Lynx (YLX-TRM8053-025-05), and boasts also with a GPS module which keeps the time reference synchronized with module of SANAV (GM-1315LA). Thanks to this last selection of components, it is designed a small system about 106 x 106 mm. Assuming that the power supply system is working during all the

Habitat Evaluation Procedures (HEP) Report : Hellsgate Project, 1999-2000 Technical Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Berger, Matthew

2000-05-01

A Habitat Evaluation Procedure (HEP) study was conducted on lands acquired and/or managed (4,568 acres total) by the Hellsgate Big Game Winter Range Wildlife Mitigation Project (Hellsgate project) to mitigate some of the losses associated with the original construction and operation of Grand Coulee Dam and inundation of habitats behind the dams. Three separate properties, totaling 2,224 acres were purchased in 1998. One property composed of two separate parcels, mostly grassland lies southeast of the town of Nespelem in Okanogan County (770 acres) and was formerly called the Hinman property. The former Hinman property lies within an area the Tribesmore » have set aside for the protection and preservation of the sharp-tailed grouse (Agency Butte unit). This special management area minus the Hinman acquisition contains 2,388 acres in a long-term lease with the Tribes. The second property lies just south of the Silver Creek turnoff (Ferry County) and is bisected by the Hellsgate Road (part of the Friedlander unit). This parcel contains 60 acres of riparian and conifer forest cover. The third property (now named the Sand Hills unit) acquired for mitigation (1,394 acres) lies within the Hellsgate Reserve in Ferry County. This new acquisition links two existing mitigation parcels (the old Sand Hills parcels and the Lundstrum Flat parcel, all former Kuehne purchases) together forming one large unit. HEP team members included individuals from the Colville Confederated Tribes Fish and Wildlife Department (CTCR), Washington Department of Fish and Wildlife (WDFW), and Bureau of Land Management (BLM). The HEP team conducted a baseline habitat survey using the following HEP species models: mule deer (Odocoileus hemionus), mink (Mustela vison), downy woodpecker (Picoides pubescens), bobcat (Lynx rufus), yellow warbler (Dendroica petechia), and sharp-tailed grouse (Tympanuchus phasianellus columbianus). HEP analysis and results are discussed within the body of the text. The

Cost-Effectiveness of Peginterferon Beta-1a and Alemtuzumab in Relapsing-Remitting Multiple Sclerosis.

PubMed

Dashputre, Ankur A; Kamal, Khalid M; Pawar, Gauri

2017-06-01

model inputs and study assumptions. Model 1 results showed that PEG dominated IM IFN and GA, compared with SC IFN; PEG had an ICER of $1,978,000 per relapse avoided. Compared with FIN, NAT, and DMF, PEG was less expensive and less effective. Model 2 showed that ALT had an ICER of $25,276 per relapse avoided relative to IFN beta-1a 44 μg. In patients with RRMS, PEG is a viable alternative when compared with the DMTs in our model. Deciding whether to choose PEG over other DMTs would depend on multiple factors. On the other hand, ALT had an ICER of $25,276 cost per relapse avoided relative to IFN beta-1a 44 μg. The study results will assist payers in evaluating different medication choices for effective therapy. No outside funding supported this study. Kamal has received research funding from Novartis Pharmaceuticals and the College of Psychiatric and Neurologic Pharmacists and also serves as a consultant for the Lynx Group. Dashputre and Pawar report no conflicts of interest. Study concept and design were primarily contributed by Dashputre, along with Kamal and Pawar. Dashputre took the lead in data collection, along with Kamal, and data analysis was performed by Dashputre, Kamal, and Pawar. The manuscript was written and revised primarily by Dashputre, along with Kamal and Pawar.

Obscured Black Hole Growth at High Redshift and High Luminosity

NASA Astrophysics Data System (ADS)

Urry, C. Megan

optical surveys, mitigating optical biases in quasar demography. 5) We will investigate the large-scale environments of quasars, in which black holes appear to acquire at least half of their mass, by studying the clustering of AGN in Stripe 82. Specifically, we will measure the halo occupation distribution, which is the probability of a dark matter halo of a given mass to host central and satellite AGN above a given luminosity. We will assess whether rapid black hole growth depends on halo mass, and how the average halo mass in which AGN occur might depend on AGN or galaxy properties. For this analysis, the hundreds of luminous quasars at z>2 in Stripe 82X and its high redshift completeness (92%) are particularly important. 6) We will investigate early black hole growth at z>6 by analyzing fluctuations in the infrared and X-ray backgrounds (i.e., below source detection levels). Specifically, we will directly correlate the Spitzer-measured cosmic infrared background (CIB) and the cosmic X-ray background (CXB) measured with XMM-Newton, on roughly 20 times larger scales than previous studies. This offers the best probe of early BH growth until high-sensitivity X-ray observatories like Athena and Lynx. These studies will determine how much mass is accreted in the most luminous and/or obscured quasars, and how the energy released into galaxies depends on key variables such as redshift, AGN luminosity, Eddington ratio and wavelength. This accurate, data validated estimate of the radiation deposited into host galaxies is essential for incorporating feedback into models of galaxy evolution. The Stripe 82X survey, as the richest multiwavelength survey covering >30 deg2 of the sky, deep enough in X-rays to see luminous quasars out to z 10, will yield many important discoveries, ideally including unexpected ones found by others in the community.

NASA's Swift Satellite Catches First Supernova in The Act of Exploding

NASA Astrophysics Data System (ADS)

2008-05-01

constellation Lynx. At 9:33 a.m. EST they spotted an extremely bright 5-minute X-ray outburst in NGC 2770. They quickly recognized that the X-rays were coming from another location in the same galaxy. People Who Read This Also Read... Black Holes Have Simple Feeding Habits Jet Power and Black Hole Assortment Revealed in New Chandra Image Chandra Data Reveal Rapidly Whirling Black Holes Ghostly Glow Reveals a Hidden Class of Long-Wavelength Radio Emitters In a paper submitted to Nature, Soderberg and 38 colleagues show that the energy and pattern of the X-ray outburst is consistent with a shock wave bursting through the surface of the progenitor star. This marks the birth of the supernova now known as SN 2008D. Although astronomers were lucky that Swift was observing NGC 2770 just at the moment when SN 2008D’s shock wave was blowing up the star, Swift is well equipped to study such an event because of its multiple instruments observing in gamma rays, X-rays, and ultraviolet light. "It was a gift of nature for Swift to be observing that patch of sky when the supernova exploded. But thanks to Swift's flexibility, we have been able to trace its evolution in detail every day since," says Swift lead scientist Neil Gehrels of NASA’s Goddard Space Flight Center in Greenbelt, Md. Due to the significance of the X-ray outburst, Soderberg immediately mounted an international observing campaign to study SN 2008D. Observations were made with major telescopes such as the Hubble Space Telescope, the Chandra X-ray Observatory, the Very Large Array in New Mexico, the Gemini North telescope in Hawaii, the Keck I telescope in Hawaii, the 200-inch and 60-inch telescopes at the Palomar Observatory in California, and the 3.5-meter telescope at the Apache Point Observatory in New Mexico. The combined observations helped Soderberg and her colleagues pin down the energy of the initial X-ray outburst, which will help theorists better understand supernovae. The observations also show that SN 2008D is

Gopherus Agassizii (Desert Tortoise). Predation/Mountain Lions (Pre-Print)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Paul D. Greger and Philip A. Medica

2009-01-01

adult sized Mountain Lion. By comparison, a 2 year old male Mountain Lion salvaged on NTS had an upper intercanine bite width of 45 mm, and a 6 month old kitten measured 35mm respectively. The Mountain Lion (Puma concolor) is the only predator that exists in southern Nevada that could possibly have a bite with a gap between its upper canine teeth that large (Murmann et al. 2006. J. Forensic Sci. 51:846-860). The appearance of the shell remains in Figure 1A is similar to that depicting Jaguar (Panthera onca) predation, on the Amazonian Tortoise (Geochelone denticulata) as illustrated by Emmons (1989. J. Herpetol. 23:311-314) with the majority of the carapace broken open and the plastron still intact. Predation of Desert Tortoises by Mountain Lions was also documented in 1993 in southern Arizona (Little Shipp Wash Plot), where 7 of 8 carcasses found were attributed to Mountain Lion predation (Averill-Murray et al. 2002. In. T.R.Van Devender [ed.], The Sonoran Desert Tortoise: Natural History, Biology, and Conservation, pp.109-134. University of Arizona Press and Arizona-Sonora Desert Museum, Tucson, Arizona). Similarly, predation by a Mountain Lion has been reported on the Argentine Tortoise (Chelonoidis chilensis) in Argentina (Acosta et al. 2004. Herpetol. Review 35:53-54), and a Mountain Lion kitten was observed to kill and consume a portion of the carapace of a Texas Tortoise (Gopherus berlandieri) in west Texas (Adams et al. 2006. Southwestern Nat. 51:581-581). Over the past 45 years this Desert Tortoise population has been monitored yearly, with no prior evidence of predation to tortoises within the fenced enclosures. On several occasions other predators such as Bobcats (Lynx rufus) have been observed within the study enclosures for as long as a week. Evidence of Kit Fox (Vulpes macrotus) sign has been observed on numerous occasions, and a Spotted Skunk (Spilogale putorius) and Longtail Weasels (Mustela frenata) have been captured and released (B.G. Maza, pers. comm

Massive Star Burps, Then Explodes

NASA Astrophysics Data System (ADS)

2007-04-01

evolved stars that have shed their outer envelopes. Swift XRT Image Swift XRT Image (Credit: NASA / GSFC / CXC /S.Immler) Most astronomers did not expect that a massive star would explode so soon after a major outburst, or that a Wolf-Rayet star would produce such a luminous eruption, so SN 2006jc represents a puzzle for theorists. "It challenges some aspects of our current model of stellar evolution," says Foley. "We really don't know what caused this star to have such a large eruption so soon before it went supernova." "SN 2006jc provides us with an important clue that LBV-style eruptions may be related to the deaths of massive stars, perhaps more closely than we used to think," adds coauthor and UC Berkeley astronomer Nathan Smith. "The fact that we have no well-established theory for what actually causes these outbursts is the elephant in the living room that nobody is talking about." SN 2006jc occurred in galaxy UGC 4904, located 77 million light years from Earth in the constellation Lynx. The supernova explosion, a peculiar variant of a Type Ib, was first sighted by Itagaki, American amateur astronomer Tim Puckett and Italian amateur astronomer Roberto Gorelli. See also NASA Goddard press release at: http://www.nasa.gov/centers/goddard/news/topstory/ 2007/supernova_imposter.html

The Quiet Explosion

NASA Astrophysics Data System (ADS)

2008-07-01

A European-led team of astronomers are providing hints that a recent supernova may not be as normal as initially thought. Instead, the star that exploded is now understood to have collapsed into a black hole, producing a weak jet, typical of much more violent events, the so-called gamma-ray bursts. The object, SN 2008D, is thus probably among the weakest explosions that produce very fast moving jets. This discovery represents a crucial milestone in the understanding of the most violent phenomena observed in the Universe. Black Hole ESO PR Photo 23a/08 A Galaxy and two Supernovae These striking results, partly based on observations with ESO's Very Large Telescope, will appear tomorrow in Science Express, the online version of Science. Stars that were at birth more massive than about 8 times the mass of our Sun end their relatively short life in a cosmic, cataclysmic firework lighting up the Universe. The outcome is the formation of the densest objects that exist, neutron stars and black holes. When exploding, some of the most massive stars emit a short cry of agony, in the form of a burst of very energetic light, X- or gamma-rays. In the early afternoon (in Europe) of 9 January 2008, the NASA/STFC/ASI Swift telescope discovered serendipitously a 5-minute long burst of X-rays coming from within the spiral galaxy NGC 2770, located 90 million light-years away towards the Lynx constellation. The Swift satellite was studying a supernova that had exploded the previous year in the same galaxy, but the burst of X-rays came from another location, and was soon shown to arise from a different supernova, named SN 2008D. Researchers at the Italian National Institute for Astrophysics (INAF), the Max-Planck Institute for Astrophysics (MPA), ESO, and at various other institutions have observed the supernova at great length. The team is led by Paolo Mazzali of INAF's Padova Observatory and MPA. "What made this event very interesting," says Mazzali, "is that the X-ray signal was very