Diversity and Spatial-Temporal Distribution of Soil Macrofauna Communities Along Elevation in the Changbai Mountain, China.

PubMed

Yin, Xiuqin; Qiu, Lili; Jiang, Yunfeng; Wang, Yeqiao

2017-06-01

The understanding of patterns of vertical variation and diversity of flora and fauna along elevational change has been well established over the past century. However, it is unclear whether there is an elevational distribution pattern for soil fauna. This study revealed the diversity and spatial-temporal distribution of soil macrofauna communities in different vegetation zones from forest to alpine tundra along elevation of the Changbai Mountain, China. The abundance, richness, and Shannon-Wiener diversity index of soil macrofauna communities were compared in four distinguished vegetation zones including the coniferous and broadleaved mixed forest zone, the coniferous forest zone, the subalpine dwarf birch (Betula ermanii) forest zone, and the alpine tundra zone. Soil macrofauna were extracted in May, July, and September of 2009. In each season, the abundance and richness of the soil macrofauna decreased with the ascending elevation. The Shannon-Wiener diversity indices of the soil macrofauna were higher in the vegetation zones of lower elevation than of higher elevation. Significant differences were observed in the abundance, richness, and Shannon-Wiener diversity index for the studied vegetation zones. Soil macrofauna congregated mainly to the litter layer in the low-elevation areas and in the 0-5 cm soil layer of the higher elevation areas. The results emphasized that the diversity of soil macrofauna communities decreased as the elevation increased and possess the distinct characteristics of zonation in the mountain ecosystem. The diversity and distribution of soil macrofauna communities were influenced by mean annual precipitation, altitude, annual radiation quantity, and mean annual temperature. © The Authors 2017. Published by Oxford University Press on behalf of Entomological Society of America. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Stimulation of microbial nitrogen cycling in aquatic ecosystems by benthic macrofauna: mechanisms and environmental implications

NASA Astrophysics Data System (ADS)

Stief, P.

2013-12-01

Invertebrate animals that live at the bottom of aquatic ecosystems (i.e., benthic macrofauna) are important mediators between nutrients in the water column and microbes in the benthos. The presence of benthic macrofauna stimulates microbial nutrient dynamics through different types of animal-microbe interactions, which potentially affect the trophic status of aquatic ecosystems. This review contrasts three types of animal-microbe interactions in the benthos of aquatic ecosystems: (i) ecosystem engineering, (ii) grazing, and (iii) symbiosis. Their specific contributions to the turnover of fixed nitrogen (mainly nitrate and ammonium) and the emission of the greenhouse gas nitrous oxide are evaluated. Published data indicate that ecosystem engineering by sediment-burrowing macrofauna stimulates benthic nitrification and denitrification, which together allows fixed nitrogen removal. However, the release of ammonium from sediments is enhanced more strongly than the sedimentary uptake of nitrate. Ecosystem engineering by reef-building macrofauna increases nitrogen retention and ammonium concentrations in shallow aquatic ecosystems, but allows organic nitrogen removal through harvesting. Grazing by macrofauna on benthic microbes apparently has small or neutral effects on nitrogen cycling. Animal-microbe symbioses provide abundant and distinct benthic compartments for a multitude of nitrogen-cycle pathways. Recent studies reveal that ecosystem engineering, grazing, and symbioses of benthic macrofauna significantly enhance nitrous oxide emission from shallow aquatic ecosystems. The beneficial effect of benthic macrofauna on fixed nitrogen removal through coupled nitrification-denitrification can thus be offset by the concurrent release of (i) ammonium that stimulates aquatic primary production and (ii) nitrous oxide that contributes to global warming. Overall, benthic macrofauna intensifies the coupling between benthos, pelagial, and atmosphere through enhanced turnover and transport of nitrogen.

Stimulation of microbial nitrogen cycling in aquatic ecosystems by benthic macrofauna: mechanisms and environmental implications

NASA Astrophysics Data System (ADS)

Stief, P.

2013-07-01

Invertebrate animals that live at the bottom of aquatic ecosystems (i.e., benthic macrofauna) are important mediators between nutrients in the water column and microbes in the benthos. The presence of benthic macrofauna stimulates microbial nutrient dynamics through different types of animal-microbe interactions, which potentially affect the trophic status of aquatic ecosystems. This review contrasts three types of animal-microbe interactions in the benthos of aquatic ecosystems: (i) ecosystem engineering, (ii) grazing, and (iii) symbiosis. Their specific contributions to the turnover of fixed nitrogen (mainly nitrate and ammonium) and the emission of the greenhouse gas nitrous oxide are evaluated. Published data indicate that ecosystem engineering by sediment-burrowing macrofauna stimulates benthic nitrification and denitrification, which together allows fixed nitrogen removal. However, the release of ammonium from sediments often is enhanced even more than the sedimentary uptake of nitrate. Ecosystem engineering by reef-building macrofauna increases nitrogen retention and ammonium concentrations in shallow aquatic ecosystems, but allows organic nitrogen removal through harvesting. Grazing by macrofauna on benthic microbes apparently has small or neutral effects on nitrogen cycling. Animal-microbe symbioses provide abundant and distinct benthic compartments for a multitude of nitrogen-cycle pathways. Recent studies revealed that ecosystem engineering, grazing, and symbioses of benthic macrofauna significantly enhance nitrous oxide emission from shallow aquatic ecosystems. The beneficial effect of benthic macrofauna on fixed nitrogen removal through coupled nitrification-denitrification can thus be offset by the concurrent release of (i) ammonium that stimulates aquatic primary production and (ii) nitrous oxide that contributes to global warming. Overall, benthic macrofauna intensifies the coupling between benthos, pelagial, and atmosphere through enhanced turnover and transport of nitrogen.

A MORE COST-EFFECTIVE EMAP BENTHIC MACROFAUNAL SAMPLING PROTOCOL

EPA Science Inventory

Benthic macrofaunal sampling protocols in the U.S. Environmental Protection Agency's Environmental Monitoring and Assessment Program (EMAP) are to collect 30 to 50 random benthic macrofauna [defined as animals retained on a 0.5 mm (East and Gulf Coasts, USA) or a 1.0 mm mesh siev...

Size matters at deep-sea hydrothermal vents: different diversity and habitat fidelity patterns of meio- and macrofauna

PubMed Central

Gollner, Sabine; Govenar, Breea; Fisher, Charles R.; Bright, Monika

2015-01-01

Species with markedly different sizes interact when sharing the same habitat. Unravelling mechanisms that control diversity thus requires consideration of a range of size classes. We compared patterns of diversity and community structure for meio- and macrofaunal communities sampled along a gradient of environmental stress at deep-sea hydrothermal vents on the East Pacific Rise (9° 50′ N) and neighboring basalt habitats. Both meio- and macrofaunal species richnesses were lowest in the high-stress vent habitat, but macrofaunal richness was highest among intermediate-stress vent habitats. Meiofaunal species richness was negatively correlated with stress, and highest on the basalt. In these deep-sea basalt habitats surrounding hydrothermal vents, meiofaunal species richness was consistently higher than that of macrofauna. Consideration of the physiological capabilities and life history traits of different-sized animals suggests that different patterns of diversity may be caused by different capabilities to deal with environmental stress in the 2 size classes. In contrast to meiofauna, adaptations of macrofauna may have evolved to allow them to maintain their physiological homeostasis in a variety of hydrothermal vent habitats and exploit this food-rich deep-sea environment in high abundances. The habitat fidelity patterns also differed: macrofaunal species occurred primarily at vents and were generally restricted to this habitat, but meiofaunal species were distributed more evenly across proximate and distant basalt habitats and were thus not restricted to vent habitats. Over evolutionary time scales these contrasting patterns are likely driven by distinct reproduction strategies and food demands inherent to fauna of different sizes. PMID:26166922

Changes in Dogger Bank macrofauna communities in the 20th century caused by fishing and climate

NASA Astrophysics Data System (ADS)

Kröncke, Ingrid

2011-09-01

The macrofauna communities on the Dogger Bank (North Sea) from the 1920s, the 1950s and the 1980s to the 2000s were compared and identified five communities with similar spatial distribution throughout the 20th century. The abundance of dominant species in the five communities varied with time. Most obvious in the 1950s was the loss of the extensive Spisula and Mactra patches, which covered most of the shallow parts of the Bank in the 1920s. Since the 1980s, they have been found only as juveniles. The biological regime shift in the late 1980s caused an increase in macrofauna abundance, species numbers, diversity and southern species in most of the communities. The climate regime shift in 2001 had opposite effects in which the abundance, species numbers, diversity and southern species decreased in most of the communities. The increase in interface-feeding species and the decrease in sand-licking amphipods in the 2000s especially in the shallow Bank Community give evidence for climate driven changes in water masses, currents, storms, turbidity and food availability via planktonic or benthic primary production. Both fishing impact and climate change are hypothesised as explaining the changes in the Dogger Bank macrofauna communities.

Notes on the origin of copromacrinite based on nitrogen functionalities and δ13C and δ15N determined on samples from the Peach Orchard coal bed, southern Magoffin County, Kentucky

USGS Publications Warehouse

Valentim, Bruno; Algarra, Manuel; Guedes, Alexandra; Ruppert, Leslie F.; Hower, James C.

2016-01-01

The study of Peach Orchard coal samples using reflected-light microscopy, isotopic composition, and nitrogen-forms analyses revealed that the macrinite-rich sample contains macrinite with coprolitic features (e.g. oxidation rind, mix of undigested palynomorphs, frequent and randomly located funginite, agglutination pulp of semifusinite reflectance, internal lack of bedding fabric, and suggestion of structures resulting from intestines and stomach walls), more pyrrolic-N (~ 16%), and lower δ13C (~ 2‰ VPDB) and δ15N (~ 4‰ Air) values than the vitrinite and semifusinite + fusinite rich samples. These findings suggest that the maceral macrinite has multiple origins based on petrography and measurable chemical differences between the macrinite, vitrinite, and semifusinite + fusinite fractions within the coal. Assuming that copromacrinite observed is an excretion then the anomalies observed may result from the symbiotic relations between the macrofauna (e.g. cockroaches) and microbiota during the digestive processes, and the nitrogen balance mechanisms inside macrofauna body.

Influence of Benthic Macrofauna as a Spatial Structuring Agent for Juvenile Haddock (Melanogrammus aeglefinus) on the Eastern Scotian Shelf, Atlantic Canada.

PubMed

Rincón, Beatriz; Kenchington, Ellen L

2016-01-01

We examined the habitat of juvenile haddock on the eastern Scotian Shelf (off Nova Scotia, Canada) in relation to grab-sampled benthic macrofaunal invertebrate species assemblages in order to determine whether there were significant differences in benthic macrofauna between areas of historically persistent high and low juvenile haddock abundance. Our analyses were conducted over two spatial scales in each of two years: among banks (Emerald, Western and Sable Island), approximately 60 km distant from each other, and between areas of high and low juvenile haddock abundance at distances of 10 to 30 km-all in an area that had not experienced groundfishing in the decade prior to sampling. We also examined fine-scale (10s of metres) within-site variability in the macrofauna and used surficial sediment characteristics, along with hydrographic variables, to identify environmental correlates. PERMANOVA identified statistically significant differences in biomass, density and composition of the benthos associated with juvenile haddock abundance; however it was difficult to determine whether the results had biological relevance. Post hoc tests showed that these differences occurred only on Sable Island Bank where both fish and benthos may have been independently responding to sediment type which was most different there (100% sand in the area of low haddock abundance vs. 22% gravel in the area of high haddock abundance). In total, 383 benthic taxa representing 13 phyla were identified. Annelida was the most specious phylum (36.29% of taxa, representing 33 families), followed by Arthropoda (with Crustaceans, mostly Amphipoda, accounting for 25.07% of the total number of taxa). The strongest pattern in the macrofauna was expressed at the largest scale, between banks, accounting for approximately 25% of the variation in the data. Emerald Bank, deeper, warmer and saltier than the Western and Sable Island Banks, had a distinctive fauna.

Influence of Benthic Macrofauna as a Spatial Structuring Agent for Juvenile Haddock (Melanogrammus aeglefinus) on the Eastern Scotian Shelf, Atlantic Canada

PubMed Central

2016-01-01

We examined the habitat of juvenile haddock on the eastern Scotian Shelf (off Nova Scotia, Canada) in relation to grab-sampled benthic macrofaunal invertebrate species assemblages in order to determine whether there were significant differences in benthic macrofauna between areas of historically persistent high and low juvenile haddock abundance. Our analyses were conducted over two spatial scales in each of two years: among banks (Emerald, Western and Sable Island), approximately 60 km distant from each other, and between areas of high and low juvenile haddock abundance at distances of 10 to 30 km–all in an area that had not experienced groundfishing in the decade prior to sampling. We also examined fine-scale (10s of metres) within-site variability in the macrofauna and used surficial sediment characteristics, along with hydrographic variables, to identify environmental correlates. PERMANOVA identified statistically significant differences in biomass, density and composition of the benthos associated with juvenile haddock abundance; however it was difficult to determine whether the results had biological relevance. Post hoc tests showed that these differences occurred only on Sable Island Bank where both fish and benthos may have been independently responding to sediment type which was most different there (100% sand in the area of low haddock abundance vs. 22% gravel in the area of high haddock abundance). In total, 383 benthic taxa representing 13 phyla were identified. Annelida was the most specious phylum (36.29% of taxa, representing 33 families), followed by Arthropoda (with Crustaceans, mostly Amphipoda, accounting for 25.07% of the total number of taxa). The strongest pattern in the macrofauna was expressed at the largest scale, between banks, accounting for approximately 25% of the variation in the data. Emerald Bank, deeper, warmer and saltier than the Western and Sable Island Banks, had a distinctive fauna. PMID:27649419

Functional trait responses to sediment deposition reduce macrofauna-mediated ecosystem functioning in an estuarine mudflat

NASA Astrophysics Data System (ADS)

Mestdagh, Sebastiaan; Bagaço, Leila; Braeckman, Ulrike; Ysebaert, Tom; De Smet, Bart; Moens, Tom; Van Colen, Carl

2018-05-01

Human activities, among which dredging and land use change in river basins, are altering estuarine ecosystems. These activities may result in changes in sedimentary processes, affecting biodiversity of sediment macrofauna. As macrofauna controls sediment chemistry and fluxes of energy and matter between water column and sediment, changes in the structure of macrobenthic communities could affect the functioning of an entire ecosystem. We assessed the impact of sediment deposition on intertidal macrobenthic communities and on rates of an important ecosystem function, i.e. sediment community oxygen consumption (SCOC). An experiment was performed with undisturbed sediment samples from the Scheldt river estuary (SW Netherlands). The samples were subjected to four sedimentation regimes: one control and three with a deposited sediment layer of 1, 2 or 5 cm. Oxygen consumption was measured during incubation at ambient temperature. Luminophores applied at the surface, and a seawater-bromide mixture, served as tracers for bioturbation and bio-irrigation, respectively. After incubation, the macrofauna was extracted, identified, and counted and then classified into functional groups based on motility and sediment reworking capacity. Total macrofaunal densities dropped already under the thinnest deposits. The most affected fauna were surficial and low-motility animals, occurring at high densities in the control. Their mortality resulted in a drop in SCOC, which decreased steadily with increasing deposit thickness, while bio-irrigation and bioturbation activity showed increases in the lower sediment deposition regimes but decreases in the more extreme treatments. The initial increased activity likely counteracted the effects of the drop in low-motility, surficial fauna densities, resulting in a steady rather than sudden fall in oxygen consumption. We conclude that the functional identity in terms of motility and sediment reworking can be crucial in our understanding of the regulation of ecosystem functioning and the impact of habitat alterations such as sediment deposition.

ABUNDANCE AND DISTRIBUTION OF INDIGENOUS, NONINDIGENOUS, AND CRYPTOGENIC BENTHIC MACROFAUNA IN WILLAPA BAY, WASHINGTON, USA

EPA Science Inventory

Benthic macrofaunal samples were collected in Willapa Bay, WA, in four habitats [eelgrass (Zostera marina), Atlantic cordgrass (Spartina alterniflora), mud shrimp (Upogebia pugettensis), ghost shrimp (Neotrypaea californiensis)] in 1996 and in seven habitats (Zostera, Spartina, U...

Organic matter composition and macrofaunal diversity in sediments of the Condor Seamount (Azores, NE Atlantic)

NASA Astrophysics Data System (ADS)

Bongiorni, Lucia; Ravara, Ascensão; Parretti, Paola; Santos, Ricardo S.; Rodrigues, Clara F.; Amaro, Teresa; Cunha, Marina R.

2013-12-01

In recent years increasing knowledge has been accumulated on seamounts ecology; however their sedimentary environments and associated biological communities remain largely understudied. In this study we investigated quantity and biochemical composition of organic matter and macrofaunal diversity in sediments of the Condor Seamount (NE Atlantic, Azores). In order to test the effect of the seamount on organic matter distribution, sediment samples were collected in 6 areas: the summit, the northern and southern flanks and bases, and in an external far field site. Macrofauna abundance and diversity were investigated on the summit, the southern flank and in the far field site. The organic matter distribution reflected the complex hydrodynamic conditions occurring on the Condor. Concentrations of organic matter compounds were generally lower on the whole seamount than in the far field site and on the seamount summit compared to flanks and bases. A clear difference was also evident between the northern and southern slopes of the Condor, suggesting a role of the seamount in conditioning sedimentation processes and distribution of food resources for benthic consumers. Macrofauna assemblages changed significantly among the three sampling sites. High abundance and dominance, accompanied by low biodiversity, characterized the macrofauna community on the Condor summit, while low dominance and high biodiversity were observed at the flank. Our results, although limited to five samples on the seamount and two off the seamount, do not necessarily support the paradigm that seamounts are more biodiverse than the surrounding seafloor. However, the abundance (and biomass), functional diversity and taxonomical distinctiveness of the macrofaunal assemblages from the Condor Seamount suggest that seamounts habitats may play a relevant role in adding to the regional biodiversity.

Response of intertidal sandy-beach macrofauna to human trampling: An urban vs. natural beach system approach.

PubMed

Reyes-Martínez, Ma José; Ruíz-Delgado, Ma Carmen; Sánchez-Moyano, Juan Emilio; García-García, Francisco José

2015-02-01

Sandy beaches are subjected to intense stressors, which are mainly derived from the increasing pattern of beach urbanization. These ecosystems are also a magnet for tourists, who prefer these locations as leisure and holiday destinations, and such activity further increases the factors that have an adverse effect on beaches. In the study reported here the effect of human trampling on macrofauna assemblages that inhabit intertidal areas of sandy beaches was assessed using a BACI design. For this purpose, three contrasting sectors of the same beach were investigated: an urban area with a high level of visitors, a protected sector with a low density of users, and a transitional area with a high level of human occupancy. The physical variables were constant over time in each sector, whereas differences were found in the intensity of human use between sectors. Density variations and changes in the taxonomic structure of the macrofauna with time were shown by PERMANOVA analysis in the urban and transitional locations whereas the protected sector remained constant throughout the study period. The amphipod Bathyporeia pelagica appears sensitive to human trampling pressure and the use of this species as a bioindicator for these types of impact is recommended. Copyright © 2014 Elsevier Ltd. All rights reserved.

BENTHIC MACROFAUNA-HABITAT ASSOCIATIONS IN WILLAPA BAY, WASHINGTON, USA

EPA Science Inventory

Estuary-wide benthic macrofauna-habitat associations in Willapa Bay, Washington, United States, were determined for 4 habitats (eelgrass [Zostera marina], Atlantic cordgrass [Spartina alterniflora], mud shrimp [Upogebia pugettensis], ghost shrimp [Neotrypaea californiensis]) in 1...

BENTHIC MACROFAUNA-HABITAT RELATIONSHIPS IN WILLAPA BAY, WA

EPA Science Inventory

Benthic macrofauna-habitat relationships were determined estuary-wide in Willapa Bay, WA for four intertidal habitats ((1) eelgrass, Zostera marina, (2) Atlantic cordgrass, Spartina alterniflora, (3) ghost shrimp, Neotrypaea californiensis, (4) mud shrimp, Upogebia pugettensis) i...

Small proportions of silt linked to distinct and predictable differences in marine macrofaunal assemblages on the continental shelf of the Pacific Northwest

NASA Astrophysics Data System (ADS)

Henkel, S. K.; Politano, K. K.

2017-07-01

Increasing interest in offshore development has motivated intensified efforts to map the seafloor for marine spatial planning. However, surficial geologic maps do not accurately represent habitats for various species groups of concern. This study used a bottom-up approach to integrate macrofaunal densities and benthic conditions on the Pacific Northwest shelf to identify macrofaunal assemblages and associated habitat features. Benthic cores and water-column profiles were collected from 137 stations from 50 to 110 m depth. Analyses grouping stations based on both similar species abundances and benthic conditions resulted in six broad habitats. Within the sampled depth and latitudinal range, sediment characteristics were the primary structuring variable. A major break in assemblages was detected between sediment that had less than 1% silt/clay and those containing more than 1% silt/clay. Assemblages differed primarily in the bivalve species present and secondarily in polychaete species. Within the greater than and less than 1% silt/clay habitats, further discretization of assemblages was based mostly on differing abundances of characteristic bivalves and polychaetes associated with differing median grain sizes, which did not correspond to traditional definitions of fine or medium sand. These data show that a bottom-up methodology is necessary to discern habitats for macrofauna and that site-specific physical sampling is necessary to predict macrofaunal assemblage composition. However, if detailed sediment characteristics are known, macrofaunal assemblages may be predicted without time-intensive biological sampling and processing. These results also indicate that seemingly small sedimentary changes due to offshore installations may have measureable effects on the relative abundances and even the species composition of macrofauna.

Macro- and meiofaunal community features in the critical environmental system of a tourist harbour (Rapallo, Ligurian Sea, NW Mediterranean).

PubMed

Harriague, Anabella Covazzi; Albertelli, Giancarlo; Misic, Cristina

2012-03-01

Two samplings were carried out in a tourist harbour, during low and high touristic activity periods, to study the macro- and meiofaunal communities in relation to the environmental features. A multivariate analysis showed close relationships: the maritime traffic disturbance and the food quality and availability drive the spatial differences of the assemblages, dividing the area into three sub-areas: the area near the Boate torrent that empties into the harbour, the harbour proper, and the external area (just outside the harbour). Macro- and meiofauna showed notably different temporal trends, indicating competition for the resources and the higher sensitivity of the macrofauna to environmental pressures. The macrofauna strongly decreased as a response to heavier harbour activities, with increasing turbidity also affecting the external station outside the harbour. Finally, comparing the macrofaunal communities to those sampled in the same area 10 years before, we found that their abundance, richness and biomass had notably decreased, highlighting the worsening of the harbour environment due to the increased organic load and turbidity. Copyright © 2011 Elsevier Ltd. All rights reserved.

BENTHIC MACROFAUNA AND HABITAT RELATIONSHIPS IN TILLAMOOK BAY

EPA Science Inventory

Tillamook Bay is subject to natural and man-made stressors, such as increased nutrients and sediments, which can alter its habitats and, thereby, impact its productivity and ecological resources. The benthic macrofauna are small, sediment-dwelling invertebrates which have strong...

BENTHIC MACROFAUNA-HABITAT RELATIONSHIPS IN TWO PACIFIC NORTHWEST ESTUARIES

EPA Science Inventory

Habitat-based ecological risk assessments rely, in part, on estimates of the ecological value of the habitats at risk. As part of a larger programmatic effort to estimate estuarine habitat values, we determined benthic macrofauna-habitat relationships for 8 intertidal habitats i...

Benthic macrofauna habitat associations in Willapa Bay, Washington, USA

NASA Astrophysics Data System (ADS)

Ferraro, Steven P.; Cole, Faith A.

2007-02-01

Estuary-wide benthic macrofauna-habitat associations in Willapa Bay, Washington, United States, were determined for 4 habitats (eelgrass [ Zostera marina], Atlantic cordgrass [ Spartina alterniflora], mud shrimp [ Upogebia pugettensis], ghost shrimp [ Neotrypaea californiensis]) in 1996 and 7 habitats (eelgrass, Atlantic cordgrass, mud shrimp, ghost shrimp, oyster [ Crassostrea gigas], bare mud/sand, subtidal) in 1998. Most benthic macrofaunal species inhabited multiple habitats; however, 2 dominants, a fanworm, Manayunkia aestuarina, in Spartina, and a sand dollar, Dendraster excentricus, in subtidal, were rare or absent in all other habitats. Benthic macrofaunal Bray-Curtis similarity varied among all habitats except eelgrass and oyster. There were significant differences among habitats within- and between-years on several of the following ecological indicators: mean number of species ( S), abundance ( A), biomass ( B), abundance of deposit (AD), suspension (AS), and facultative (AF) feeders, Swartz's index (SI), Brillouin's index ( H), and jackknife estimates of habitat species richness (HSR). In the 4 habitats sampled in both years, A was about 2.5× greater in 1996 (a La Niña year) than 1998 (a strong El Niño year) yet relative values of S, A, B, AD, AS, SI, and H among the habitats were not significantly different, indicating strong benthic macrofauna-habitat associations despite considerable climatic and environmental variability. In general, the rank order of habitats on indicators associated with high diversity and productivity (high S, A, B, SI, H, HSR) was eelgrass = oyster ≥ Atlantic cordgrass ≥ mud shrimp ≥ bare mud/sand ≥ ghost shrimp = subtidal. Vegetation, burrowing shrimp, and oyster density and sediment %silt + clay and %total organic carbon were generally poor, temporally inconsistent predictors of ecological indicator variability within habitats. The benthic macrofauna-habitat associations in this study can be used to help identify critical habitats, prioritize habitats for environmental protection, index habitat suitability, assess habitat equivalency, and as habitat value criteria in ecological risk assessments in Willapa Bay.

Dynamics of the bathyal Benthic Boundary Layer in the northwestern Mediterranean: depth and temporal variations in macrofaunal megafaunal communities and their possible connections within deep-sea trophic webs

NASA Astrophysics Data System (ADS)

Cartes, Joan E.

1998-01-01

The distribution patterns of benthopelagic fauna and the macrofauna-megafauna trophic relationships in the Benthic Boundary Layer (BBL) were studied. The study is based on data collected during 6 sampling cruises off the Catalan coast (western Mediterranean) during 1991-1995 at depths ranging from 389-1355 m. Crustaceans were the dominant benthopelagic macrofauna in the BBL level closest to the sea bed (~0-1.5 m above bottom) on the Catalan Sea slope. Copepods and peracarid crustaceans (mysids, amphipods, isopods, and cumaceans) were dominant, whereas euphausiids and natantian decapods, some taxa of gelatinous plankton (siphonophores, medusae, and chaetognaths), and benthopelagic fishes were also well represented groups. Seasonal changes in megafaunal decapod crustaceans abundance seem to be linked to changes in the density and the biological cycle of BBL macrofauna, which constitute an important part of the available food exploited by megafauna. Both the advective and the vertical flow of organic matter in the north-western Mediterranean should simultaneously influence peaks of available food (BBL macrofauna) for bathyal-megafaunal decapods. Recruitment of macrofaunal (suprabenthos and infauna) species at the level of canyons and neighbouring slope zones mainly occurred between late autumn-late winter and would probably be mainly induced by an advective component. However, the macrofaunal sizes consumed by megafaunal decapods are found more abundantly represented in spring and summer populations. In parallel, the vertical fluxes seem to determine maxima in the abundance of planktonic organisms (especially copepods) which also occur in late spring-summer. Size, natatory capability, and energetic value are important factors in the selection of food-resources by megafaunal decapods, which would have a greater availability of food in late spring-summer. This would explain both the seasonal maxima of decapod abundance in summer, and maxima in the catches of some commercial species (i.e. the shrimp Aristeus antennatus) in spring-summer.

Temporal patterns of Deepwater Horizon impacts on the benthic infauna of the northern Gulf of Mexico continental slope

PubMed Central

Baguley, Jeffrey G.; Conrad-Forrest, Nathan; Cooksey, Cynthia; Hyland, Jeffrey L.; Lewis, Christopher; Montagna, Paul A.; Ricker, Robert W.; Rohal, Melissa; Washburn, Travis

2017-01-01

The Deepwater Horizon oil spill occurred in spring and summer 2010 in the northern Gulf of Mexico. Research cruises in 2010 (approximately 2–3 months after the well had been capped), 2011, and 2014 were conducted to determine the initial and subsequent effects of the oil spill on deep-sea soft-bottom infauna. A total of 34 stations were sampled from two zones: 20 stations in the “impact” zone versus 14 stations in the “non-impact” zone. Chemical contaminants were significantly different between the two zones. Polycyclic aromatic hydrocarbons averaged 218 ppb in the impact zone compared to 14 ppb in the non-impact zone. Total petroleum hydrocarbons averaged 1166 ppm in the impact zone compared to 102 ppm in the non-impact zone. While there was no difference between zones for meiofauna and macrofauna abundance, community diversity was significantly lower in the impact zone. Meiofauna taxa richness over the three sampling periods averaged 8 taxa/sample in the impact zone, compared to 10 taxa/sample in the non-impact zone; and macrofauna richness averaged 25 taxa/sample in the impact zone compared to 30 taxa/sample in the non-impact zone. Oil originating from the Deepwater Horizon oil spill reached the seafloor and had a persistent negative impact on diversity of soft-bottom, deep-sea benthic communities. While there are signs of recovery for some benthic community variables, full recovery has not yet occurred four years after the spill. PMID:28640913

Hydrodynamic conditioning of diversity and functional traits in subtidal estuarine macrozoobenthic communities

NASA Astrophysics Data System (ADS)

van der Wal, Daphne; Lambert, Gwladys I.; Ysebaert, Tom; Plancke, Yves M. G.; Herman, Peter M. J.

2017-10-01

Variations in abundance and diversity of estuarine benthic macrofauna are typically described along the salinity gradient. The influence of gradients in water depth, hydrodynamic energy and sediment properties are less well known. We studied how these variables influence the distribution of subtidal macrofauna in the polyhaline zone of a temperate estuary (Westerschelde, SW Netherlands). Macrofauna density, biomass and species richness, combined in a so-called ecological richness, decreased with current velocities and median grain-size and increased with organic carbon of the sediment, in total explaining 39% of the variation. The macrofauna community composition was less well explained by the three environmental variables (approx. 12-15% in total, with current velocity explaining approx. 8%). Salinity, water depth and distance to the intertidal zone had a very limited effect on both ecological richness and the macrofauna community. The proportion of (surface) deposit feeders (including opportunistic species), decreased relative to that of omnivores and carnivores with increasing current velocity and sediment grain-size. In parallel, the proportion of burrowing sessile benthic species decreased relative to that of mobile benthic species that are able to swim. Correspondingly, spatial variations in hydrodynamics yielded distinct hotspots and coldspots in ecological richness. The findings highlight the importance of local hydrodynamic conditions for estuarine restoration and conservation. The study provides a tool based on a hydrodynamic model to assess and predict ecological richness in estuaries.

A Dissolved Oxygen Threshold for Shifts in Bacterial Community Structure in a Seasonally Hypoxic Estuary.

PubMed

Spietz, Rachel L; Williams, Cheryl M; Rocap, Gabrielle; Horner-Devine, M Claire

2015-01-01

Pelagic ecosystems can become depleted of dissolved oxygen as a result of both natural processes and anthropogenic effects. As dissolved oxygen concentration decreases, energy shifts from macrofauna to microorganisms, which persist in these hypoxic zones. Oxygen-limited regions are rapidly expanding globally; however, patterns of microbial communities associated with dissolved oxygen gradients are not yet well understood. To assess the effects of decreasing dissolved oxygen on bacteria, we examined shifts in bacterial community structure over space and time in Hood Canal, Washington, USA-a glacial fjord-like water body that experiences seasonal low dissolved oxygen levels known to be detrimental to fish and other marine organisms. We found a strong negative association between bacterial richness and dissolved oxygen. Bacterial community composition across all samples was also strongly associated with the dissolved oxygen gradient, and significant changes in bacterial community composition occurred at a dissolved oxygen concentration between 5.18 and 7.12 mg O2 L(-1). This threshold value of dissolved oxygen is higher than classic definitions of hypoxia (<2.0 mg O2 L(-1)), suggesting that changes in bacterial communities may precede the detrimental effects on ecologically and economically important macrofauna. Furthermore, bacterial taxa responsible for driving whole community changes across the oxygen gradient are commonly detected in other oxygen-stressed ecosystems, suggesting that the patterns we uncovered in Hood Canal may be relevant in other low oxygen ecosystems.

Swashed away? Storm impacts on sandy beach macrofaunal communities

NASA Astrophysics Data System (ADS)

Harris, Linda; Nel, Ronel; Smale, Malcolm; Schoeman, David

2011-09-01

Storms can have a large impact on sandy shores, with powerful waves eroding large volumes of sand off the beach. Resulting damage to the physical environment has been well-studied but the ecological implications of these natural phenomena are less known. Since climate change predictions suggest an increase in storminess in the near future, understanding these ecological implications is vital if sandy shores are to be proactively managed for resilience. Here, we report on an opportunistic experiment that tests the a priori expectation that storms impact beach macrofaunal communities by modifying natural patterns of beach morphodynamics. Two sites at Sardinia Bay, South Africa, were sampled for macrofauna and physical descriptors following standard sampling methods. This sampling took place five times at three- to four-month intervals between April 2008 and August 2009. The second and last sampling events were undertaken after unusually large storms, the first of which was sufficiently large to transform one site from a sandy beach into a mixed shore for the first time in living memory. A range of univariate (linear mixed-effects models) and multivariate (e.g. non-metric multidimensional scaling, PERMANOVA) methods were employed to describe trends in the time series, and to explore the likelihood of possible explanatory mechanisms. Macrofaunal communities at the dune-backed beach (Site 2) withstood the effects of the first storm but were altered significantly by the second storm. In contrast, macrofauna communities at Site 1, where the supralittoral had been anthropogenically modified so that exchange of sediments with the beach was limited, were strongly affected by the first storm and showed little recovery over the study period. In line with predictions from ecological theory, beach morphodynamics was found to be a strong driver of temporal patterns in the macrofaunal community structure, with the storm events also identified as a significant factor, likely because of their direct effects on beach morphodynamics. Our results also support those of other studies suggesting that developed shores are more impacted by storms than are undeveloped shores. Whilst recognising we cannot generalise too far beyond our limited study, our results contribute to the growing body of evidence that interactions between sea-level rise, increasing storminess and the expansion of anthropogenic modifications to the shoreline will place functional beach ecosystems under severe pressure over the forthcoming decades and we therefore encourage further, formal testing of these concepts.

Non-Linear Interactions Determine the Impact of Sea-Level Rise on Estuarine Benthic Biodiversity and Ecosystem Processes

PubMed Central

Yamanaka, Tsuyuko; Raffaelli, David; White, Piran C. L.

2013-01-01

Sea-level rise induced by climate change may have significant impacts on the ecosystem functions and ecosystem services provided by intertidal sediment ecosystems. Accelerated sea-level rise is expected to lead to steeper beach slopes, coarser particle sizes and increased wave exposure, with consequent impacts on intertidal ecosystems. We examined the relationships between abundance, biomass, and community metabolism of benthic fauna with beach slope, particle size and exposure, using samples across a range of conditions from three different locations in the UK, to determine the significance of sediment particle size beach slope and wave exposure in affecting benthic fauna and ecosystem function in different ecological contexts. Our results show that abundance, biomass and oxygen consumption of intertidal macrofauna and meiofauna are affected significantly by interactions among sediment particle size, beach slope and wave exposure. For macrofauna on less sloping beaches, the effect of these physical constraints is mediated by the local context, although for meiofauna and for macrofauna on intermediate and steeper beaches, the effects of physical constraints dominate. Steeper beach slopes, coarser particle sizes and increased wave exposure generally result in decreases in abundance, biomass and oxygen consumption, but these relationships are complex and non-linear. Sea-level rise is likely to lead to changes in ecosystem structure with generally negative impacts on ecosystem functions and ecosystem services. However, the impacts of sea-level rise will also be affected by local ecological context, especially for less sloping beaches. PMID:23861863

Environmental features and macrofauna of Kahana Estuary, Oahu, Hawaii

USGS Publications Warehouse

Maciolek, J.A.; Timbol, A.S.

1981-01-01

Lack of ecological information on Hawaiian estuaries prompted an intensive 2-year study of a small (5.7 ha) stream-mouth estuary on windward Oahu. Water quality and macrofauna were sampled weekly at seven stations. The water mass was strongly stratified vertically except during freshets. Average values for water column temperature and bottom salinity were 23.2°C and 12‰ at the head to 28.3°C and 28‰ at the mouth. Dissolved oxygen saturation in the water column varied from about 50% at night to 140% in the afternoon. Usually, bottom waters were 3–6°C warmer than surface waters and sometimes showed severe oxygen depletion.Macrofauna, collected primarily by seining, consisted mainly of decapod crustaceans (four species of crabs, seven species of shrimps) and fishes (24 species). Other typical estuarine taxons (mollusks, barnacles, polychaetes) were scarce or absent. Diversity increased seaward from 14 species near the estuary head to 29 species near the mouth. Three species of crustaceans and six of fishes were captured at all stations. Most abundant were the native prawn, Macrobrachium grandimanus, and mullet, Mugil cephalus. Perennially resident adults occurred among crustaceans and gobioid fishes; most other fishes were present as juveniles and sporadic adults. Comparisons with other data suggest that more than 50 species of native fishes may occur in Hawaiian estuaries, and that estuarine macrofaunal diversity on oceanic islands is much lower than on continents at similar latitudes.

Non-linear interactions determine the impact of sea-level rise on estuarine benthic biodiversity and ecosystem processes.

PubMed

Yamanaka, Tsuyuko; Raffaelli, David; White, Piran C L

2013-01-01

Sea-level rise induced by climate change may have significant impacts on the ecosystem functions and ecosystem services provided by intertidal sediment ecosystems. Accelerated sea-level rise is expected to lead to steeper beach slopes, coarser particle sizes and increased wave exposure, with consequent impacts on intertidal ecosystems. We examined the relationships between abundance, biomass, and community metabolism of benthic fauna with beach slope, particle size and exposure, using samples across a range of conditions from three different locations in the UK, to determine the significance of sediment particle size beach slope and wave exposure in affecting benthic fauna and ecosystem function in different ecological contexts. Our results show that abundance, biomass and oxygen consumption of intertidal macrofauna and meiofauna are affected significantly by interactions among sediment particle size, beach slope and wave exposure. For macrofauna on less sloping beaches, the effect of these physical constraints is mediated by the local context, although for meiofauna and for macrofauna on intermediate and steeper beaches, the effects of physical constraints dominate. Steeper beach slopes, coarser particle sizes and increased wave exposure generally result in decreases in abundance, biomass and oxygen consumption, but these relationships are complex and non-linear. Sea-level rise is likely to lead to changes in ecosystem structure with generally negative impacts on ecosystem functions and ecosystem services. However, the impacts of sea-level rise will also be affected by local ecological context, especially for less sloping beaches.

Diversity of the benthic macrofauna off northern Namibia from the shelf to the deep sea

NASA Astrophysics Data System (ADS)

Eisenbarth, Simone; Zettler, Michael L.

2016-03-01

In late summer 2011, shortly after an upwelling event, 17 stations ranging from 30 to 2513 m water depth have been sampled at 20° south in the northern part of the Benguela Current Large Marine Ecosystem (BCLME) for the investigation of the benthic macrofauna. Sediments of this area are dominated by silt. At the time of sampling, oxygen conditions on the shelf were poor (between 0.42 and 0.68 ml l- 1) but not hypoxic. Below 400 m, however, concentrations rose steadily up to 5.28 ml l- 1. Macrozoobenthic communities along this depth gradient are described, revealing among others the community structure for the continental margin area and the deep sea off northern Namibia for the first time. Cluster analysis revealed 5 different communities along the depth gradient with three shelf communities, one continental margin community and one deep-sea community. All in all, 314 different taxa were found with polychaetes being the most abundant group. Diversity index (Shannon) was lowest for the shallow water community with 2.21 and highest for the deep-sea community with 4.79, showing a clear trend with increasing water depth. Species richness, however, reached its maximum with 187 taxa along the continental margin between 400 and 1300 m water depth. Dominant species for each community are named with the two Cumacea, Iphinoeafricana and Upselaspis caparti, being characteristic for the shallow water community. On the shelf, we found surprisingly high biomass values (23-123 g m- 2), mainly caused by polychaetes, the bivalve Sinupharus galatheae and the gastropod Nassarius vinctus. In terms of composition, the remaining communities were dominated by polychaetes with members of the Paraonidae dominating along the continental margin where we also found surprisingly high abundances of the bivalves Pecten sp. and Dosinia sp. Spionid polychaetes and some representatives of the genus Paraonis were the most common organisms for the deep-sea community.

Biodiversity of macrofaunal assemblages from three Portuguese submarine canyons (NE Atlantic)

NASA Astrophysics Data System (ADS)

Cunha, Marina R.; Paterson, Gordon L. J.; Amaro, Teresa; Blackbird, Sabena; de Stigter, Henko C.; Ferreira, Clarisse; Glover, Adrian; Hilário, Ana; Kiriakoulakis, Konstadinos; Neal, Lenka; Ravara, Ascensão; Rodrigues, Clara F.; Tiago, Áurea; Billett, David S. M.

2011-12-01

The macrofaunal assemblages from three Portuguese submarine canyons, Nazaré, Cascais and Setúbal were studied from samples collected at their upper (900-1000 m), middle (3200-3500 m) and lower sections (4200-4500 m) and at the adjacent open slopes (˜1000 m), during the HERMES cruises D297 (R.R.S. Discovery, 2005) CD179 (R.R.S. Charles Darwin, 2006) and 64PE252 (R.V. Pelagia, 2006). The taxonomic composition and patterns in biodiversity, abundance and community structure of the benthic macrofauna were described. Annelida (42.1% of total abundance; 137 species) and Arthropoda (20.6%; 162 species) were, respectively, the most abundant and the most species-rich Phyla among the 342 taxa identified during this study. Multivariate analyses showed significant differences between and within canyons and between canyons and open slope assemblages. At their upper section, canyons supported higher macrofauna abundance but slightly lower biodiversity than the adjacent slopes at similar depth. In all canyons abundance reached the highest value in the middle section and the lowest in the upper section, with marked fluctuations in Nazaré (474-4599 ind. m -2) and lower variability in Cascais (583-1125 ind. m -2). The high abundance and dominance of the assemblages in the middle section of Nazaré and Setúbal was accompanied by depressed biodiversity, while in Cascais, Hurlbert's expected species richness showed increasing values from the upper to the middle canyon, and maintained the high values at the lower section. Overall, the Nazaré Canyon showed the lowest expected species richness (ES (100): 16-39) and the Cascais Canyon the highest (39-54). There was a significant negative Kendall's correlation between total organic carbon concentrations in the superficial sediments and ES (100) and a significant positive correlation between total nitrogen and macrofauna density. The influences of organic enrichment, sediment heterogeneity and hydrodynamic regime on the abundance, diversity and community structure of the macrofauna are discussed. It is suggested that altered and localised environmental conditions in the Portuguese canyons play an important role in modifying more common abundance and diversity bathymetric patterns evident in many continental slope environments.

Wrack patches and their influence on upper-shore macrofaunal abundance in an Atlantic Canada sandy beach system

NASA Astrophysics Data System (ADS)

MacMillan, Mitchell R.; Quijón, Pedro A.

2012-08-01

Patches of stranded macrophytes (wrack) are a distinctive feature of sandy beaches worldwide and a potential food subsidy for their resident communities. Despite their relevance, the spatial variation of wrack and its potential influence on upper shore beach organisms remain poorly understood. Wrack and macrofauna were surveyed on seven sandy beaches associated with dunes, till bluffs and sandstone cliffs along the north shore of Prince Edward Island, Atlantic Canada. Wrack patch density, cover, and water content were measured, and their associated macrofauna was compared to the communities inhabiting nearby bare sediments. The survey found among-site spatial differences in wrack characteristics and identified rockweeds (Fucus serratus) and eelgrass (Zostera marina) as the main macrophyte species in the area. Macrofaunal abundances were higher in wrack than in bare sediments but this varied among locations. A field manipulation was then conducted at two sandy beaches to measure macrofauna colonization on patches of fresh and aged rockweed and eelgrass. Regardless of macrophyte's age, macrofaunal organisms preferentially colonized sediments associated with rockweeds. In addition, calculations across treatments detected positive relationships between macrofaunal abundance and wet mass, dry mass and water content of the wrack patches, regardless of macrophyte species or state. Macrophyte preferences were further explored by comparing the nutritional value of the plant tissues and assessing macrofauna feeding rates under laboratory conditions. Rockweed tissues had consistently higher protein, lipid and carbohydrate contents than eelgrass and were affected by higher invertebrate consumption rates. Overall, these results suggest that spatial variation and wrack features and species composition play key roles on the structure of the supralittoral macrofauna.

Benthic macrofauna assemblages and biochemical properties of sediments in two Antarctic regions differently affected by climate change

NASA Astrophysics Data System (ADS)

Sañé, E.; Isla, E.; Gerdes, D.; Montiel, A.; Gili, J.-M.

2012-03-01

Lipid, protein and carbohydrate concentrations have been determined in sediment cores from the continental shelf in the South Eastern Weddell Sea (SEWS), where no ice shelves have been present at least for thousands of years, and the continental shelf off the Eastern Antarctic Peninsula (EAP), in the area where two ice shelf collapses occurred in 1995 and 2002. On one hand, SEWS presents an important flux of fresh organic matter to the seabed during summer, whereas on the other hand, the presence of ice shelves in EAP hampered photosynthesis restricting the input of organic matter to advected refractory material. In the present study, biochemical variables and benthic macrofauna abundance, biomass and diversity confirmed differences between the two regions. Lipid concentrations were higher in SEWS than in EAP, whereas carbohydrate concentrations were higher in the latter region. These differences were attributed to the higher concentration of labile and refractory material, respectively. Biomass, abundance and diversity of the macrofauna were higher in SEWS than in EAP, where benthic communities started receiving a fresh organic matter input only after the recent ice shelf collapses. As regards macrofauna composition, both regions presented macrobenthic communities associated to early stages of recolonization.

A Dissolved Oxygen Threshold for Shifts in Bacterial Community Structure in a Seasonally Hypoxic Estuary

PubMed Central

Spietz, Rachel L.; Williams, Cheryl M.; Rocap, Gabrielle; Horner-Devine, M. Claire

2015-01-01

Pelagic ecosystems can become depleted of dissolved oxygen as a result of both natural processes and anthropogenic effects. As dissolved oxygen concentration decreases, energy shifts from macrofauna to microorganisms, which persist in these hypoxic zones. Oxygen-limited regions are rapidly expanding globally; however, patterns of microbial communities associated with dissolved oxygen gradients are not yet well understood. To assess the effects of decreasing dissolved oxygen on bacteria, we examined shifts in bacterial community structure over space and time in Hood Canal, Washington, USA−a glacial fjord-like water body that experiences seasonal low dissolved oxygen levels known to be detrimental to fish and other marine organisms. We found a strong negative association between bacterial richness and dissolved oxygen. Bacterial community composition across all samples was also strongly associated with the dissolved oxygen gradient, and significant changes in bacterial community composition occurred at a dissolved oxygen concentration between 5.18 and 7.12 mg O2 L-1. This threshold value of dissolved oxygen is higher than classic definitions of hypoxia (<2.0 mg O2 L-1), suggesting that changes in bacterial communities may precede the detrimental effects on ecologically and economically important macrofauna. Furthermore, bacterial taxa responsible for driving whole community changes across the oxygen gradient are commonly detected in other oxygen-stressed ecosystems, suggesting that the patterns we uncovered in Hood Canal may be relevant in other low oxygen ecosystems. PMID:26270047

[Benthic macrofauna associated to Thalassia testudinum in Bahía de Mochima, Sucre, Venezuela].

PubMed

Jiménez Prieto, M; Liñero-Arana, I; Blanco-Rambla, J P; Fermín, J

2000-12-01

Diversity and abundance of benthic macrofauna associated to Thalassia testudinum were studied at Ensenada de Reyes, Mochima Bay, in the northeastern coast of Venezuela. Samples were taken monthly in six stations, three at 1 m in depth and three at 6 m, between December 1992 and February 1994, using a quadrat of 0.25 m2 for collecting plants and sediment; each sample was washed with seawater through a 1 mm sieve. The specimens were fixed in 6% formaldehyde. A total of 1722 organisms (6 888 ind x m2) and 127 species of macroinvertebrates were collected. Mollusks dominated with 53 species, followed by polychaetes (40), crustaceans (18) and echinoderms (8). Remaining groups were represented by 1-2 species. The highest abundance was in October (214 specimens), and the lowest in December 1993 (79 specimens). Specific richness was between 47 species in October and 18 in May 1993. Mean species diversity was 2.79-1.36 bits/ind. There were differences (ANOVA p<0.01) in number of specimens at the two depths but not throughout the 15 month study period (p>0.05). There were more specimens and species at the lowest depth and in stations with higher Thalassia testudinum biomass.

Trait modality distribution of aquatic macrofauna communities as explained by pesticides and water chemistry.

PubMed

Ieromina, O; Musters, C J M; Bodegom, P M; Peijnenburg, W J G M; Vijver, M G

2016-08-01

Analyzing functional species' characteristics (species traits) that represent physiological, life history and morphological characteristics of species help understanding the impacts of various stressors on aquatic communities at field conditions. This research aimed to study the combined effects of pesticides and other environmental factors (temperature, dissolved oxygen, dissolved organic carbon, floating macrophytes cover, phosphate, nitrite, and nitrate) on the trait modality distribution of aquatic macrofauna communities. To this purpose, a field inventory was performed in a flower bulb growing area of the Netherlands with significant variation in pesticides pressures. Macrofauna community composition, water chemistry parameters and pesticide concentrations in ditches next to flower bulb fields were determined. Trait modalities of nine traits (feeding mode, respiration mode, locomotion type, resistance form, reproduction mode, life stage, voltinism, saprobity, maximum body size) likely to indicate pesticides impacts were analyzed. According to a redundancy analysis, phosphate -and not pesticides- constituted the main factor structuring the trait modality distribution of aquatic macrofauna. The functional composition could be ascribed for 2-4 % to pesticides, and for 3-11 % to phosphate. The lack of trait responses to pesticides may indicate that species may have used alternative strategies to adapt to ambient pesticides stress. Biomass of animals exhibiting trait modalities related to feeding by predation and grazing, presence of diapause form or dormancy, reproduction by free clutches and ovoviviparity, life stage of larvae and pupa, was negatively correlated to the concentration of phosphate. Hence, despite the high pesticide pollution in the area, variation in nutrient-related stressors seems to be the dominant driver of the functional composition of aquatic macrofauna assembly in agricultural ditches.

Soil fauna and leaf species, but not species diversity, affect initial soil erosion in a subtropical forest plantation

NASA Astrophysics Data System (ADS)

Seitz, Steffen; Goebes, Philipp; Assmann, Thorsten; Schuldt, Andreas; Scholten, Thomas

2017-04-01

In subtropical parts of China, high rainfall intensities cause continuous soil losses and thereby provoke severe harms to ecosystems. In woodlands, it is not the tree canopy, but mostly an intact forest floor that provides protection from soil erosion. Although the protective role of leaf litter covers against soil losses is known for a long time, little research has been conducted on the processes involved. For instance, the role of different leaf species and leaf species diversity has been widely disregarded. Furthermore, the impact of soil meso- and macrofauna within the litter layer on soil losses remains unclear. To investigate how leaf litter species and diversity as well as soil meso- and macrofauna affect sediment discharge in a subtropical forest ecosystem, a field experiment was carried out in Xingangshan, Jiangxi Province, PR China (BEF China). A full-factorial random design with 96 micro-scale runoff plots and seven domestic leaf species in three diversity levels and a bare ground feature were established. Erosion was initiated with a rainfall simulator. This study confirms that leaf litter cover generally protects forest soils from water erosion (-82 % sediment discharge on leaf covered plots compared to bare plots) and this protection is gradually removed as the litter layer decomposes. Different leaf species showed variable impacts on sediment discharge and thus erosion control. This effect can be related to different leaf habitus, leaf decomposition rates and food preferences of litter decomposing meso- and macrofauna. In our experiment, runoff plots with leaf litter from Machilus thunbergii in monoculture showed the highest sediment discharge (68.0 g m-2), whereas plots with Cyclobalanopsis glauca in monoculture showed the smallest rates (7.9 g m-2). At the same time, neither leaf species diversity, nor functional diversity showed any significant influence, only a negative trend could be observed. Nevertheless, the protective effect of the leaf litter layer was influenced by the presence (or absence) of soil meso- and macrofauna. Fauna presence increased soil erosion rates significantly by 58 %. It was assumed that this faunal effect arose from arthropods loosening and processing the soil surface as well as fragmenting and decomposing the protecting leaf litter covers. Thus, effects of this fauna group on sediment discharge have to be considered in soil erosion experiments.

The role of topographic structure and soil macrofauna presence at spoil heaps during spontaneous succession.

NASA Astrophysics Data System (ADS)

Walmsley, Alena; Vachová, Pavla; Vach, Marek

2016-04-01

This research was investigating whether topographic features, which determine soil nutrient and moisture distribution, in combination with soil fauna (wireworm and earthworm) presence, affect plant community composition at a spontaneously revegetated post mining area with an undulating surface. Two sites of different age with 3 types of topographic features were selected, soil moisture and nutrient content were measured, plant community composition and soil macrofauna community was sampled at each position. Wireworms were present at all positions and were most abundant at bottoms of waves at the younger site; their presence was correlated with several plant species, but the direction of the interaction isn't clear. Earthworms were only present at the older site and had highest abundance at flat sections. Earthworm presence affected the amount of nitrogen in soil - the most nitrogen content was at the site with highest earthworm density and was followed by higher diversity of plant community. The plant community composition was generally correlated with plant available nutrient content - especially P and N. We infer that topographic features affect nutrient and soil fauna distribution, which consequently influences plant community composition.

Distribution of soft-bottom macrofauna in the deep open Baltic Sea in relation to environmental variability

NASA Astrophysics Data System (ADS)

Laine, Ari O.

2003-05-01

To analyse the large-scale distribution of soft-bottom macrofauna in the open Baltic Sea, samples for species abundance and biomass were collected in 1996-1997. Benthic community structure was used to classify and describe different assemblages and the observed distribution of communities was related to environmental factors. Distinct benthic assemblages were found that were dominated by only a few species ( Harmothoe sarsi, Saduria entomon, Monoporeia affinis, Pontoporeia femorata and Macoma balthica). These assemblages were related to different subareas and/or depth zones of the Baltic Sea. Salinity or the combined effects of salinity, dissolved oxygen and sediment organic matter content best explained the patterns in community distribution, indicating the importance of hydrography and sediment quality as structuring factors of the macrozoobenthos communities. When compared to long-term studies on Baltic macrozoobenthos it is evident that the results represent only a momentary state in the succession of the open-sea communities, which have been affected by past changes in hydrography, and will be subject to future changes in accordance with the variable environment, affected by climate.

Environmental factors affecting benthic macrofauna along a gradient of intermediate sandy beaches in northern Spain

NASA Astrophysics Data System (ADS)

Rodil, I. F.; Lastra, M.

2004-09-01

Ten sandy beaches along the north coast of Spain were studied during September 1999 to analyse the number of species, abundance and biomass of macroinfauna along a gradient of intermediate beach types and exposure range. Faunal samples were collected with metallic cylinders (25 cm diameter, 15 cm depth) at 10 equally spaced shore levels along six replicated transects separated randomly and extending from above the drift line to the low tide swash zone. Exposure rate, Dean's parameter ( Ω), beach state index (BSI) and relative tidal range (RTR) were estimated at each beach. Length and width of the beach, intertidal slope, sorting and median grain size and also swash amplitude and wave characteristics were measured. The number of species was between 10 and 29. Macrofaunal abundances ranged between 4962 and 71,228 ind. linear m -1 and between 31 and 329 ind. m -2, while biomass (ash free dry weight) ranged between 0.027 and 0.278 g m -2 and between 3 and 61 g linear m -1. The results show some significant trends: the number of species is the biotic variable most affected by physical and morphodynamic factors, increasing linearly with relative tidal range and decreasing with increasing average grain size. The same trend was observed from exposed to very exposed beaches and the biomass decreased exponentially with increasing average grain size. These trends agree with previous studies in different coasts in the world where coarse sands limit the benthic macrofauna. The morphodynamic parameters as Dean's parameter or Beach State Index did not show a predictive value. The results suggest that different characteristics of benthic macrofauna communities in intermediate beaches can be affected in different ways by the physical processes involved in beach morphodynamics.

Differences in Size Selectivity and Catch Composition Between Two Bottom Trawls Used in High-Arctic Surveys of Bottom Fishes, Crabs and Other Demersal Macrofauna

NASA Astrophysics Data System (ADS)

Lauth, R.; Norcross, B.; Kotwicki, S.; Britt, L.

2016-02-01

Long-term monitoring of the high-Arctic marine biota is needed to understand how the ecosystem is changing in response to climate change, diminishing sea-ice, and increasing anthropogenic activity. Since 1959, bottom trawls (BT) have been a primary research tool for investigating fishes, crabs and other demersal macrofauna in the high-Arctic. However, sampling gears, methodologies, and the overall survey designs used have generally lacked consistency and/or have had limited spatial coverage. This has restricted the ability of scientists and managers to effectively use existing BT survey data for investigating historical trends and zoogeographic changes in high-Arctic marine populations. Two different BTs currently being used for surveying the high-Arctic are: 1) a small-mesh 3-m plumb-staff beam trawl (PSBT), and 2) a large-mesh 83-112 Eastern bottom trawl (EBT). A paired comparison study was conducted in 2012 to compare catch composition and the sampling characteristics of the two different trawl gears, and a size selectivity ratio statistic was used to investigate how the probability of fish and crab retention differs between the EBT and PBST. Obvious contrasting characteristics of the PSBT and EBT were mesh size, area-swept, tow speed, and vertical opening. The finer mesh and harder bottom-tending characteristics of the PSBT retained juvenile fishes and other smaller macroinvertebrates and it was also more efficient catching benthic infauna that were just below the surface. The EBT had a larger net opening with greater tow duration at a higher speed that covered a potentially wider range of benthic habitats during a single tow, and it was more efficient at capturing larger and more mobile organisms, as well as organisms that were further off bottom. The ratio statistic indicated large differences in size selectivity between the two gears for both fish and crab. Results from this investigation will provide a framework for scientists and mangers to better understand how to interpret and compare data from existing PBST and EBT surveys in the high-Arctic, and the results provide information on factors worth considering in choosing what BT gear to use for a standardized long-term BT sampling program to monitor fishes, crabs and other demersal macrofauna in the high-Arctic.

Impacts of trawling on benthic macro-fauna and -flora of the Spencer Gulf prawn fishing grounds

NASA Astrophysics Data System (ADS)

Svane, Ib; Hammett, Zoe; Lauer, Peter

2009-05-01

The overall effects of trawling on benthic habitats and their assemblages are dependent on the distribution and intensity of trawl effort. The benthic habitats of the Spencer Gulf prawn trawling grounds are subjected to known variable levels of trawling disturbance recorded from fisher's logbooks. These habitats have not been quantitatively investigated. The aim of the study was firstly to characterise the macro-faunal and -floral assemblages and secondly, to comparatively assess trawl impact by testing the null hypothesis of no differences between five sites exposed to different intensity of trawl effort. The distribution and abundance of benthic macro-fauna and -flora were studied at two sampling resolutions by using beam trawl sampling (˜10,000 m 2) and underwater stereophotography (˜4.5 m 2) at five sites with different levels of trawl disturbance (effort). The results showed that the Spencer Gulf prawn trawling grounds are characterised by sandy sediments with a low content of silt and clay, with the exception of one site with very fine gravel. Biomass, abundance and cover of macro-fauna and -flora were generally low throughout, but with large differences among sites. Biomass, abundance and cover were found to be negatively correlated to both trawl hours from 1994-1998 and during the period of study. ANOSIM and SIMPER analyses using biomass, abundance and percentage cover as variables showed significant differences between sites with eight species or taxonomic groups contributing more than 10% to the observed similarity within sites. The two northern sites were dominated by sponges and the bearded mussel, Trichomya hirsutus, and the southern hammer oyster, Malleus meridianus. Other species that contributed to the similarity within sites were the ascidian, Polycarpa viridis, mobile epifauna (the blue swimmer crab, Portunus pelagicus, and the western king prawn, Penaeus (Melicertus) latisulcatus) and demersal fish species (Degens leatherjacket, Thamnaconus degeni, and the Melbourne silver belly, Parequula melbournensis). Simpson's Index of Diversity (1 - λ) and species richness in the beam trawl samples were fairly even across all sites, but a significant effect of site was found in the stereophotographic transect samples. It was concluded that prawn trawling has a strong influence on the structure of the benthic habitats of the Spencer Gulf prawn fishing grounds highlighted by the magnitude of change and the strength of the gradient of effects. Confounding factors linked to the biophysical attributes of the sites are believed to be minor.

Meio- and Macrofaunal Communities in Artificial Water-Filled Tree Holes: Effects of Seasonality, Physical and Chemical Parameters, and Availability of Food Resources

PubMed Central

Ptatscheck, Christoph; Traunspurger, Walter

2015-01-01

Objectives In this study we investigated the dynamics of meiofaunal and macrofaunal communities in artificial water-filled tree holes. The abundances and, for the first time, biomasses and secondary production rates of these communities were examined. The experimental set-up consisted of 300 brown plastic cups placed in temperate mixed forests and sampled five times over a period of 16 months to determine the impact of (i) seasonal events, (ii) physicochemical parameters, and (iii) food resources on the tree hole metazoans. Outcomes Metazoan organisms, especially the meiofauna (rotifers and nematodes) occupied nearly all of the cups (> 99%) throughout the year. Between 55% and 99% of the metazoan community was represented by rotifers (max. 557,000 individuals 100 cm-2) and nematodes (max. 58,000 individuals 100 cm-2). Diptera taxa, particularly Dasyhelea sp. (max. 256 individuals 100 cm-2) dominated the macrofaunal community. Macrofauna accounted for the majority of the metazoan biomass, with a mean dry weight of 5,800 μg 100 cm-2 and an annual production rate of 20,400 μg C 100 cm-2, whereas for meiofauna mean biomass and annual production were 100 μg 100 cm-2 and 5,300 μg C 100 cm-2, respectively. The macrofaunal taxa tended to show more fluctuating population dynamic while the meiofaunal dynamic was rather low with partly asynchronous development. Seasonality (average temperature and rain intervals) had a significant impact on both meiofauna and macrofauna. Furthermore, bottom-up control (chlorophyll-a and organic carbon), mainly attributable to algae, was a significant factor that shaped the metazoan communities. In contrast, physicochemical water parameters had no evident influence. 23.7% of organism density distribution was explained by redundancy analysis (RDA) indicating a high dynamic and asynchrony of the systems. PMID:26284811

Ecological structure and function in a restored versus natural salt marsh

PubMed Central

Rezek, Ryan J.; Lebreton, Benoit; Sterba-Boatwright, Blair

2017-01-01

Habitat reconstruction is commonly employed to restore degraded estuarine habitats and lost ecological functions. In this study, we use a combination of stable isotope analyses and macrofauna community analysis to compare the ecological structure and function between a recently constructed Spartina alterniflora salt marsh and a natural reference habitat over a 2-year period. The restored marsh was successful in providing habitat for economically and ecologically important macrofauna taxa; supporting similar or greater density, biomass, and species richness to the natural reference during all but one sampling period. Stable isotope analyses revealed that communities from the natural and the restored marshes relied on a similar diversity of food resources and that decapods had similar trophic levels. However, some generalist consumers (Palaemonetes spp. and Penaeus aztecus) were more 13C-enriched in the natural marsh, indicating a greater use of macrophyte derived organic matter relative to restored marsh counterparts. This difference was attributed to the higher quantities of macrophyte detritus and organic carbon in natural marsh sediments. Reduced marsh flooding frequency was associated with a reduction in macrofaunal biomass and decapod trophic levels. The restored marsh edge occurred at lower elevations than natural marsh edge, apparently due to reduced fetch and wind-wave exposure provided by the protective berm structures. The lower elevation of the restored marsh edge mitigated negative impacts in sampling periods with low tidal elevations that affected the natural marsh. The results of this study highlight the importance of considering sediment characteristics and elevation in salt marsh constructions. PMID:29261795

Ecological structure and function in a restored versus natural salt marsh.

PubMed

Rezek, Ryan J; Lebreton, Benoit; Sterba-Boatwright, Blair; Beseres Pollack, Jennifer

2017-01-01

Habitat reconstruction is commonly employed to restore degraded estuarine habitats and lost ecological functions. In this study, we use a combination of stable isotope analyses and macrofauna community analysis to compare the ecological structure and function between a recently constructed Spartina alterniflora salt marsh and a natural reference habitat over a 2-year period. The restored marsh was successful in providing habitat for economically and ecologically important macrofauna taxa; supporting similar or greater density, biomass, and species richness to the natural reference during all but one sampling period. Stable isotope analyses revealed that communities from the natural and the restored marshes relied on a similar diversity of food resources and that decapods had similar trophic levels. However, some generalist consumers (Palaemonetes spp. and Penaeus aztecus) were more 13C-enriched in the natural marsh, indicating a greater use of macrophyte derived organic matter relative to restored marsh counterparts. This difference was attributed to the higher quantities of macrophyte detritus and organic carbon in natural marsh sediments. Reduced marsh flooding frequency was associated with a reduction in macrofaunal biomass and decapod trophic levels. The restored marsh edge occurred at lower elevations than natural marsh edge, apparently due to reduced fetch and wind-wave exposure provided by the protective berm structures. The lower elevation of the restored marsh edge mitigated negative impacts in sampling periods with low tidal elevations that affected the natural marsh. The results of this study highlight the importance of considering sediment characteristics and elevation in salt marsh constructions.

Bacterial sulfur disproportionation constrains timing of neoproterozoic oxygenation

USGS Publications Warehouse

Kunzmann, Marcus; Bui, Thi Hao; Crockford, Peter W.; Halverson, Galen P.; Scott, Clinton T.; Lyons, Timothy W.; Wing, Boswell A.

2017-01-01

Various geochemical records suggest that atmospheric O2 increased in the Ediacaran (635–541 Ma), broadly coincident with the emergence and diversification of large animals and increasing marine ecosystem complexity. Furthermore, geochemical proxies indicate that seawater sulfate levels rose at this time too, which has been hypothesized to reflect increased sulfide oxidation in marine sediments caused by sediment mixing of the newly evolved macrofauna. However, the exact timing of oxygenation is not yet understood, and there are claims for significant oxygenation prior to the Ediacaran. Furthermore, recent evidence suggests that physical mixing of sediments did not become important until the late Silurian. Here we report a multiple sulfur isotope record from a ca. 835–630 Ma succession from Svalbard, further supported by data from Proterozoic strata in Canada, Australia, Russia, and the United States, in order to investigate the timing of oxygenation. We present isotopic evidence for onset of globally significant bacterial sulfur disproportionation and reoxidative sulfur cycling following the 635 Ma Marinoan glaciation. Widespread sulfide oxidation helps to explain the observed first-order increase in seawater sulfate concentration from the earliest Ediacaran to the Precambrian-Cambrian boundary by reducing the amount of sulfur buried as pyrite. Expansion of reoxidative sulfur cycling to a global scale also indicates increasing environmental O2 levels. Thus, our data suggest that increasing atmospheric O2 levels may have played a role in the emergence of the Ediacaran macrofauna and increasing marine ecosystem complexity.

Mesozoic Bivalvia from Clerke and Mermaid Canyons, northwest Australian continental slope

NASA Astrophysics Data System (ADS)

Grant-Mackie, J. A.

Four sets of rock samples from two sites off the northwest Australian shelf in 3625-4480 m of water contain macrofaunas, mainly bivalves, of warm shallow-water origin. Mermaid Canyon (16 deg 19 min S, 118 deg 23 min E) provided many samples of oolitic calcarenite containing Pseudopecten (Pseudopecten) dugong n.sp., indicating an Early Jurassic age and Tethyan relationship. Three hand-specimens from the ridge forming the western edge of Clerke Canyon (16 deg 29 min S, 118 deg 30 min E) yielded a Norian coral-?Lima-oyster assemblage and the Norian-Rhaetian bivalve Palaeocardita aff. globiformis (Boettger). The latter shows relationship with south-east Asian (Indonesia-Vietnam-south China) forms.

Distribution of benthic macrofaunal communities in the western Baltic Sea with regard to near-bottom environmental parameters. 1. Causal analysis

NASA Astrophysics Data System (ADS)

Gogina, Mayya; Glockzin, Michael; Zettler, Michael L.

2010-01-01

In this study we relate patterns in the spatial distribution of macrofaunal communities to patterns in near-bottom environmental parameters, analysing the data observed in a limited area in the western Baltic Sea. The data used represents 208 stations, sampled during the years 2000 to 2007 simultaneously for benthic macrofauna, associated sediment and near-bottom environmental characteristics, in a depth range from 7.5 to 30 m. Only one degree of longitude wide, the study area is geographically bounded by the eastern part of the Mecklenburg Bight and the southwestern Darss Sill Area. Spatial distribution of benthic macrofauna is related to near-bottom environmental patterns by means of various statistical methods (e.g. rank correlation, hierarchical clustering, nMDS, BIO-ENV, CCA). Thus, key environmental descriptors were disclosed. Within the area of investigation, these were: water depth, regarded as a proxy for other environmental factors, and total organic content. Distinct benthic assemblages are defined and discriminated by particular species ( Hydrobia ulvae-Scoloplos armiger, Lagis koreni-Mysella bidentata and Capitella capitata-Halicryptus spinulosus). Each assemblage is related to different spatial subarea and characterised by a certain variability of environmental factors. This study represents a basis for the predictive modeling of species distribution in the selected study area.

Disentangling the effects of solar radiation, wrack macroalgae and beach macrofauna on associated bacterial assemblages.

PubMed

Rodil, Iván F; Fernandes, Joana P; Mucha, Ana P

2015-12-01

Wrack detritus plays a significant role in shaping community dynamics and food-webs on sandy beaches. Macroalgae is the most abundant beach wrack, and it is broken down by the combination of environmental processes, macrofauna grazing, and microbial degradation before returning to the sea as nutrients. The role of solar radiation, algal species and beach macrofauna as ecological drivers for bacterial assemblages associated to wrack was investigated by experimental manipulation of Laminaria ochroleuca and Sargassum muticum. We examined the effects of changes in solar radiation on wrack-associated bacterial assemblages by using cut-off filters: PAR + UVA + UVB (280-700 nm; PAB), PAR + UVA (320-700 nm; PA), PAR (400-700 nm; P), and a control with no filter (C). Results showed that moderate changes in UVR are capable to promote substantial differences on bacterial assemblages so that wrack patches exposed to full sunlight treatments (C and PAB) showed more similar assemblages among them than compared to patches exposed to treatments that blocked part of the solar radiation (P and PA). Our findings also suggested that specific algal nutrient quality-related variables (i.e. nitrogen, C:N ratio and phlorotannins) are main determinants of bacterial dynamics on wrack deposits. We showed a positive relationship between beach macrofauna, especially the most abundant and active wrack-users, the amphipod Talitrus saltator and the coleopteran Phaleria cadaverina, and both bacterial abundance and richness. Moderate variations in natural solar radiation and shifts in the algal species entering beach ecosystems can modify the role of wrack in the energy-flow of nearshore environments with unknown ecological implications for coastal ecosystems. Copyright © 2015 Elsevier Ltd. All rights reserved.

Seagrass habitat complexity and macroinvertebrate abundance in Lakshadweep coral reef lagoons, Arabian Sea

NASA Astrophysics Data System (ADS)

Ansari, Z. A.; Rivonker, C. U.; Ramani, P.; Parulekar, A. H.

1991-09-01

Macrofauna of seagrass community in the five Lakshadweep atolls were studied and compared. The associated epifaunal and infaunal taxa comprising nine major taxonomic groups, showed significant differences in the total number of individuals (1041 8411 m-2) among sites and habitats. The density of macrofauna was directly related to mean macrophytic biomass (405 895 g wet wt. m-2). The fauna was dominated by epifaunal polychaetes, amphipods and isopods in the vegetated areas. When compared with the density of nearby unvegetated areasleft( {bar x = 815{text{m }}^{ - 2} } right), seagrass meadows harbour a denser and richer macroinvertebrate assemblageleft( {bar x = 4023{text{m }}^{ - 2} } right).

[Community structure of soil fauna in Eucalyptus grandis plantations at different slope locations].

PubMed

Zhao, Yu; Zhong, Yu; Zhang, Jian; Yang, Wan-qin

2010-09-01

To understand the effects of slope location on the community structure of soil fauna in Eucalyptus grandis plantation, an investigation was made on the soil fauna in 3 E. grandis plantations at different slope locations in the hilly area of Sichuan Province from January to October 2009. A total of 39,2762 individuals were observed, belonging to 146 groups, 7 phyla, 16 classes, and 31 orders. The community composition, trophic group, diversity, and seasonal dynamics of soil fauna in the plantations all varied with slope. The abundance of macro-fauna, xeric meso- and micro-fauna, saprophagous macro-fauna, and omnivorous xeric meso- and micro-fauna increased with the decrease of slope, indicating that soil fauna had sensitive responses to the soil environmental factors affected by slope. Significant differences in the diversity of soil saprophagous macro-fauna and hygrophilous meso- and micro-fauna were observed at different slope locations, suggesting that these two faunal groups could be used as the indicators of the habitat heterogeneity of E. grandis plantations at different slope. Overall, slope location had definite effects on the community structure and distribution of soil fauna in the E. grandis plantations, but the effects were not statistically significant.

Cold-seep-like macrofaunal communities in organic- and sulfide-rich sediments of the Congo deep-sea fan

NASA Astrophysics Data System (ADS)

Olu, K.; Decker, C.; Pastor, L.; Caprais, J.-C.; Khripounoff, A.; Morineaux, M.; Ain Baziz, M.; Menot, L.; Rabouille, C.

2017-08-01

Methane-rich fluids arising from organic matter diagenesis in deep sediment layers sustain chemosynthesis-based ecosystems along continental margins. This type of cold seep develops on pockmarks along the Congo margin, where fluids migrate from deep-buried paleo-channels of the Congo River, acting as reservoirs. Similar ecosystems based on shallow methane production occur in the terminal lobes of the present-day Congo deep-sea fan, which is supplied by huge quantities of primarily terrestrial material carried by turbiditic currents along the 800 km channel, and deposited at depths of up to nearly 5000 m. In this paper, we explore the effect of this carbon enrichment of deep-sea sediments on benthic macrofauna, along the prograding lobes fed by the current active channel, and on older lobes receiving less turbiditic inputs. Macrofaunal communities were sampled using either USNEL cores on the channel levees, or ROV blade cores in the chemosynthesis-based habitats patchily distributed in the active lobe complex. The exceptionally high organic content of the surface sediment in the active lobe complex was correlated with unusual densities of macrofauna for this depth, enhanced by a factor 7-8, compared with those of the older, abandoned lobe, whose sediment carbon content is still higher than in Angola Basin at same depth. Macrofaunal communities, dominated by cossurid polychaetes and tanaids were also more closely related to those colonizing low-flow cold seeps than those of typical deep-sea sediment. In reduced sediments, microbial mats and vesicomyid bivalve beds displayed macrofaunal community patterns that were similar to their cold-seep counterparts, with high densities, low diversity and dominance of sulfide-tolerant polychaetes and gastropods in the most sulfidic habitats. In addition, diversity was higher in vesicomyid bivalve beds, which appeared to bio-irrigate the upper sediment layers. High beta-diversity is underscored by the variability of geochemical gradients in vesicomyid assemblages, and by the vesicomyid population characteristics that vary in density, size and composition. By modifying the sediment geochemistry differently according to their morphology and physiology, the different vesicomyid species play an important role structuring macrofauna composition and vertical distribution. Dynamics of turbiditic deposits at a longer temporal scale (thousands of years) and their spatial distribution in the lobe area also resulted in high heterogeneity of the "cold-seep-like communities". Dynamics of chemosynthetic habitats and associated macrofauna in the active lobe area resembled those previously observed at the Regab pockmark along the Congo margin and rapid succession is expected to cope with high physical disturbance by frequent turbiditic events and huge sedimentation rates. Finally, we propose a model of the temporal evolution of these peculiar habitats and communities on longer timescales in response to changes in distributary channels within the lobe complex.

Potential retention effect at fish farms boosts zooplankton abundance

NASA Astrophysics Data System (ADS)

Fernandez-Jover, D.; Toledo-Guedes, K.; Valero-Rodríguez, J. M.; Fernandez-Gonzalez, V.; Sanchez-Jerez, P.

2016-11-01

Coastal aquaculture activities influence wild macrofauna in natural environments due to the introduction of artificial structures, such as floating cages, that provide structural complexity in the pelagic system. This alters the abundance and distribution of the affected species and also their feeding behaviour and diet. Despite this, the effects of coastal aquaculture on zooplankton assemblages and the potential changes in their abundance and distribution remain largely unstudied. Traditional plankton sampling hauls between the farm mooring systems entail some practical difficulties. As an alternative, light traps were deployed at 2 farms in the SW Mediterranean during a whole warm season. Total zooplankton capture by traps at farms was higher than at control locations on every sampling night. It ranged from 3 to 10 times higher for the taxonomic groups: bivalvia, cladocera, cumacea, fish early-life-stages, gastropoda, polychaeta and tanaidacea; 10-20 times higher for amphipoda, chaetognatha, isopoda, mysidacea and ostracoda, and 22 times higher for copepoda and the crustacean juvenile stages zoea and megalopa. Permutational analysis showed significant differences for the most abundant zooplankton groups (copepoda, crustacean larvae, chaetognatha, cladocera, mysidacea and polychaeta). This marked incremental increase in zooplankton taxa at farms was consistent, irrespective of the changing environmental variables registered every night. Reasons for the greater abundance of zooplankton at farms are discussed, although results suggest a retention effect caused by cage structures rather than active attraction through physical or chemical cues.

Complex Effects of Ecosystem Engineer Loss on Benthic Ecosystem Response to Detrital Macroalgae.

PubMed

Rossi, Francesca; Gribsholt, Britta; Gazeau, Frederic; Di Santo, Valentina; Middelburg, Jack J

2013-01-01

Ecosystem engineers change abiotic conditions, community assembly and ecosystem functioning. Consequently, their loss may modify thresholds of ecosystem response to disturbance and undermine ecosystem stability. This study investigates how loss of the bioturbating lugworm Arenicola marina modifies the response to macroalgal detrital enrichment of sediment biogeochemical properties, microphytobenthos and macrofauna assemblages. A field manipulative experiment was done on an intertidal sandflat (Oosterschelde estuary, The Netherlands). Lugworms were deliberately excluded from 1× m sediment plots and different amounts of detrital Ulva (0, 200 or 600 g Wet Weight) were added twice. Sediment biogeochemistry changes were evaluated through benthic respiration, sediment organic carbon content and porewater inorganic carbon as well as detrital macroalgae remaining in the sediment one month after enrichment. Microalgal biomass and macrofauna composition were measured at the same time. Macroalgal carbon mineralization and transfer to the benthic consumers were also investigated during decomposition at low enrichment level (200 g WW). The interaction between lugworm exclusion and detrital enrichment did not modify sediment organic carbon or benthic respiration. Weak but significant changes were instead found for porewater inorganic carbon and microalgal biomass. Lugworm exclusion caused an increase of porewater carbon and a decrease of microalgal biomass, while detrital enrichment drove these values back to values typical of lugworm-dominated sediments. Lugworm exclusion also decreased the amount of macroalgae remaining into the sediment and accelerated detrital carbon mineralization and CO2 release to the water column. Eventually, the interaction between lugworm exclusion and detrital enrichment affected macrofauna abundance and diversity, which collapsed at high level of enrichment only when the lugworms were present. This study reveals that in nature the role of this ecosystem engineer may be variable and sometimes have no or even negative effects on stability, conversely to what it should be expected based on current research knowledge.

Comparing efficacy of different taxonomic resolutions and surrogates in detecting changes in soft bottom assemblages due to coastal defence structures.

PubMed

Bertasi, Fabio; Colangelo, Marina Antonia; Colosio, Francesco; Gregorio, Gianni; Abbiati, Marco; Ceccherelli, Victor Ugo

2009-05-01

Sandy shores on the West coast of the North Adriatic Sea are extensively protected by different types of defence structures to prevent coastal erosion. Coastal defence schemes modify the hydrodynamic regime, the sediment structure and composition thus affecting the benthic assemblages. This study examines the effectiveness in detecting changes in soft bottom assemblages caused by coastal defence structures by using different levels of taxonomic resolution, polychaetes and/or bivalves as surrogates and different data transformations. A synoptic analyses of three datasets of subtidal benthic macrofauna used in studies aimed at assessing the impact of breakwaters along the North Adriatic coast has been done. Analyses of similarities and correlations between distance matrices were done using matrices with different levels of taxonomic resolution, and with polychaetes or bivalves data alone. Lentidium mediterraneum was the most abundant species in all datasets. Its abundance was not consistently related to the presence of defence structures. Moreover, distribution patterns of L. mediterraneum were masking the structure of the whole macrofaunal assemblages. Removal of L. mediterraneum from the datasets allowed the detection of changes in benthic assemblages due to coastal defences. Analyses on different levels of taxonomic resolution showed that the level of family maintained sufficient information to detect the impacts of coastal defence structures on benthic assemblages. Moreover, the outcomes depended on the transformation used. Patterns of distribution of bivalves, used as surrogates, showed low correlations with the patterns of the total macrofaunal species assemblages. Patterns of polychaetes, if identified to the species or genus level showed higher correlations with the whole dataset. However, the identification of polychaetes to species and genus level is as costly as the identification of all macrobenthic taxa at family level. This study provided additional evidences that taxonomic sufficiency is a useful tool in environmental monitoring, also in investigations on the impacts of coastal defence structures on subtidal macrofauna. The use of coarser taxonomic level, being time-efficient, would allow improving sampling designs of monitoring programs by increasing replication in space and time and by allowing long term monitoring studies.

Macrofaunal Patterns in and around du Couedic and Bonney Submarine Canyons, South Australia

PubMed Central

Dittmann, Sabine; Sorokin, Shirley J.; Hendrycks, Ed

2015-01-01

Two South Australian canyons, one shelf-incising (du Couedic) and one slope-limited (Bonney) were compared for macrofaunal patterns on the shelf and slope that spanned three water masses. It was hypothesized that community structure would (H1) significantly differ by water mass, (H2) show significant regional differences and (H3) differ significantly between interior and exterior of each canyon. Five hundred and thirty-one species of macrofauna ≥1 mm were captured at 27 stations situated in depth stratified transects inside and outside the canyons from 100 to1500 m depth. The macrofauna showed a positive relationship to depth in abundance, biomass, species richness and community composition while taxonomic distinctness and evenness remained high at all depths. Biotic variation on the shelf was best defined by variation in bottom water primary production while sediment characteristics and bottom water oxygen, temperature and nutrients defined biotic variation at greater depth. Community structure differed significantly (p<0.01) among the three water masses (shelf-flowing South Australian current, upper slope Flinders current and lower slope Antarctic Intermediate Water) (H1). Although community differences between the du Couedic and Bonney regions were marginally above significance at p = 0.05 (H2), over half of the species captured were unique to each region. This supports the evidence from fish and megafaunal distributions that the du Couedic and Bonney areas are in different bioregions. Overall, the canyon interiors were not significantly different in community composition from the exterior (H3). However, both canyons had higher abundance and/or biomass, increased species dominance, different species composition and coarser sediments near the canyon heads compared to outside the canyons at the same depth (500 m), suggestive of heightened currents within the canyons that influence community composition there. At 1000–1500 m, the canyon interiors were depauperate, typical of V-shaped canyons elsewhere. The large number of species captured, given the relatively low sampling effort and focus on the larger macrofauna, support previous studies that identify the South Australian coast as a high biodiversity area. PMID:26618354

Freshwater scarcity effects on the aquatic macrofauna of a European Mediterranean-climate estuary.

PubMed

González-Ortegón, Enrique; Baldó, Francisco; Arias, Alberto; Cuesta, Jose A; Fernández-Delgado, Carlos; Vilas, César; Drake, Pilar

2015-01-15

In the Mediterranean-climate zone, recurrent drought events and increasing water demand generally lead to a decrease in freshwater input to estuaries. This water scarcity may alter the proper function of estuaries as nursery areas for marine species and as permanent habitat for estuarine species. A 12-year data set of the aquatic macrofauna (fish, decapod and mysid crustaceans) in a Mediterranean estuary (Guadalquivir estuary, South Spain) was analysed to test if water scarcity favours the nursery function of regional estuaries to the detriment of permanent estuarine inhabitants. Target species typically displayed a salinity-related distribution and estuarine salinisation in dry years resulted in a general upstream community displacement. However, annual densities of marine species were neither consistently higher in dry years nor estuarine species during wet years. Exceptions included the estuarine mysid Neomysis integer and the marine shrimp Crangon crangon, which were more abundant in wet and dry years, respectively. High and persistent turbidity, a collateral effect of water scarcity, altered both the structural (salinity-related pattern) and functional (key prey species and predator density) community characteristics, chiefly after the second drought period of the analysis. The observed high inter-year environmental variability, as well as species-specific effects of water scarcity, suggests that exhaustive and long-term sampling programmes will be required for rigorously monitoring the estuarine communities of the Mediterranean-climate region. Copyright © 2014 Elsevier B.V. All rights reserved.

Enumeration of viruses and prokaryotes in deep-sea sediments and cold seeps of the Gulf of Mexico

USGS Publications Warehouse

Kellogg, Christina A.

2010-01-01

Little is known about the distribution and abundance of viruses in deep-sea cold-seep environments. Like hydrothermal vents, seeps support communities of macrofauna that are sustained by chemosynthetic bacteria. Sediments close to these communities are hypothesized to be more microbiologically active and therefore to host higher numbers of viruses than non-seep areas. Push cores were taken at five types of Gulf of Mexico habitats at water depths below 1000 m using a remotely operated vehicle (ROV). The habitats included non-seep reference sediment, brine seeps, a microbial mat, an urchin field, and a pogonophoran worm community. Samples were processed immediately for enumeration of viruses and prokaryotes without the addition of a preservative. Prokaryote counts were an order of magnitude lower in sediments directly in contact with macrofauna (urchins, pogonophorans) compared to all other samples (107 vs. 108 cells g-1 dry weight) and were highest in areas of elevated salinity (brine seeps). Viral-Like Particle (VLP) counts were lowest in the reference sediments and pogonophoran cores (108 VLP g-1 dry wt), higher in brine seeps (109 VLP g-1 dry wt), and highest in the microbial mats (1010 VLP g-1 dry wt). Virus-prokaryote ratios (VPR) ranged from <5 in the reference sediment to >30 in the microbial mats and >60 in the urchin field. VLP counts and VPR were all significantly greater than those reported from sediments in the deep Mediterranean Sea and in most cases were higher than recent data from a cold-seep site near Japan. The high VPR suggest that greater microbial activity in or near cold-seep environments results in greater viral production and therefore higher numbers of viruses.

Enumeration of viruses and prokaryotes in deep-sea sediments and cold seeps of the Gulf of Mexico

NASA Astrophysics Data System (ADS)

Kellogg, Christina A.

2010-11-01

Little is known about the distribution and abundance of viruses in deep-sea cold-seep environments. Like hydrothermal vents, seeps support communities of macrofauna that are sustained by chemosynthetic bacteria. Sediments close to these communities are hypothesized to be more microbiologically active and therefore to host higher numbers of viruses than non-seep areas. Push cores were taken at five types of Gulf of Mexico habitats at water depths below 1000 m using a remotely operated vehicle (ROV). The habitats included non-seep reference sediment, brine seeps, a microbial mat, an urchin field, and a pogonophoran worm community. Samples were processed immediately for enumeration of viruses and prokaryotes without the addition of a preservative. Prokaryote counts were an order of magnitude lower in sediments directly in contact with macrofauna (urchins, pogonophorans) compared to all other samples (107 vs. 108 cells g-1 dry weight) and were highest in areas of elevated salinity (brine seeps). Viral-Like Particle (VLP) counts were lowest in the reference sediments and pogonophoran cores (108 VLP g-1 dry wt), higher in brine seeps (109 VLP g-1 dry wt), and highest in the microbial mats (1010 VLP g-1 dry wt). Virus-prokaryote ratios (VPR) ranged from <5 in the reference sediment to >30 in the microbial mats and >60 in the urchin field. VLP counts and VPR were all significantly greater than those reported from sediments in the deep Mediterranean Sea and in most cases were higher than recent data from a cold-seep site near Japan. The high VPR suggest that greater microbial activity in or near cold-seep environments results in greater viral production and therefore higher numbers of viruses.

Live and dead deep-sea benthic foraminiferal macrofauna of the Levantine basin (SE Mediterranean) and their ecological characteristics

NASA Astrophysics Data System (ADS)

Hyams-Kaphzan, Orit; Lubinevsky, Hadas; Crouvi, Onn; Harlavan, Yehudit; Herut, Barak; Kanari, Mor; Tom, Moshe; Almogi-Labin, Ahuva

2018-06-01

The present study sought to quantitatively characterize the live and dead benthic foraminifera communities of the deep southeastern Levantine basin of the Mediterranean Sea (33.4º-31.7 ºN, 31.3º-34.9 ºE; 100-1900 m water depth) and their relationships to environmental conditions. Box corer samples were collected at 50 sites between June and July 2013. The foraminiferal macrofauna (> 250 μm) were enumerated and identified (76% to the species level). Six live foraminiferal assemblages were identified, inhabiting six biotopes, the shelf margin (SM), two upper continental slopes (UCS1 and UCS2), the lower continental slope (LCS), the eastern bathyal plain (EBP) and the western bathyal plain (WBP). The dead communities were divided into four biotopes, generally compatible with the live ones, excluding the UCS2 and the EBP. The foraminiferal density in the various live biotopes was relatively stable across the studied area, excluding the UCS2 and EBP, unlike the density of the dead shells, which increased with depth. The number of taxa per biotope was estimated by rarefaction curves and compared to the observed numbers, with a decreasing number of live taxa with water depth. The alpha-diversity, which was evaluated in relation to the number of sampled individuals, reached an asymptote in all biotopes, with very low values in the WBP. The within-biotope heterogeneity was evaluated by the average Chao-Sørensen similarity index and by a beta-diversity index (exp(gamma diversity) - exp(alpha diversity)), revealing variable heterogeneities in both assemblages. Water depth, sediment grain size mode, CaCO3 (wt%), and clay fraction (wt%) were jointly but feebly correlated with live faunal composition.

Macrofaunal community structure in Bahía Concepción (Chile) before and after the 8.8 Mw Maule mega-earthquake and tsunami.

PubMed

Cárcamo, Paula J; Hernández-Miranda, Eduardo; Veas, Rodrigo; Quiñones, Renato A

2017-09-01

Faunal assemblages of subtidal sedimentary environments are key components of coastal ecosystems. Benthic communities inhabiting the coastal zone near urban centers in Concepción Bay (Chile) have been described as highly disturbed (i.e. impoverished in diversity and species richness). This is due to the frequent presence of hypoxic conditions at the bottom due to the intrusion of low oxygen Equatorial Subsurface Water, high natural productivity and the high load of organic matter generated by several anthropogenic activities. A mega-earthquake (8.8 Mw) and subsequent tsunami occurred on the coast of south-central Chile on February 27, 2010 (27F), heavily impacting Concepción Bay, which is located 30 km south of the epicenter. The objectives of the present study are: (i) to evaluate the effect produced by the mega-earthquake and tsunami on the benthic community, and (ii) to assess dissimilarity in macrofauna composition and abundance in Concepción Bay at an inter-decadal time scale based on a comparison between our sampling conducted between 2010 and 2013 and information published since 1969. Our results show that the benthic macrofauna of Concepción Bay was disturbed by the 27F (i.e. high community dissimilarity in 2010). Changes in community structure were observed at an inter-annual scale (i.e. diminished community dissimilarity in 2013), suggesting a recovery post-27F. At an inter-decadal scale, community structure post-27F was dissimilar to the structure described for the 1980's and 1990's but more similar to that reported for 1969. The reducing conditions of the sediments due to the high input of organic matter that took place in the 1980's and 1990's may explain this dissimilarity. Copyright © 2017 Elsevier Ltd. All rights reserved.

Determining the effects of freshwater inflow on benthic macrofauna in the Caloosahatchee Estuary, Florida.

PubMed

Palmer, Terence A; Montagna, Paul A; Chamberlain, Robert H; Doering, Peter H; Wan, Yongshan; Haunert, Kathleen M; Crean, Daniel J

2016-07-01

Florida legislation requires determining and implementing an appropriate range and frequency of freshwater inflows that will sustain a fully functional estuary. Changes in inflow dynamics to the Caloosahatchee Estuary, Florida have altered salinity regimes that, in turn, have altered the ecological integrity of the estuary. The purpose of this current project is to determine how changes in freshwater inflows affect water quality, and in turn, benthic macrofauna, spatially within the Caloosahatchee Estuary and between multiyear wet and dry periods. Thirty-four benthic species were identified as being indicator species for salinity zones, and the estuary was divided into 4 zones based on differences in community structure within the estuary. Community structure had the highest correlations with water quality parameters that were common indicators of freshwater conditions resulting from inflows. A significant relationship between salinity and diversity occurs both spatially and temporally because of increased numbers of marine species as salinities increase. A salinity-based model was used to estimate inflow during wet and dry periods for each of the macrofauna community zones. The approach used here (identifying bioindicators and community zones with corresponding inflow ranges) is generic and will be useful for developing targets for managing inflow in estuaries worldwide. Integr Environ Assess Manag 2016;12:529-539. © 2015 SETAC. © 2015 SETAC.

Interplay between abiotic factors and species assemblages mediated by the ecosystem engineer Sabellaria alveolata (Annelida: Polychaeta)

NASA Astrophysics Data System (ADS)

Jones, Auriane G.; Dubois, Stanislas F.; Desroy, Nicolas; Fournier, Jérôme

2018-01-01

Sabellaria alveolata is a gregarious polychaete that uses sand particles to build three-dimensional structures known as reefs, fixed atop rocks or built on soft sediments. These structures are known to modify the local grain-size distribution and to host a highly diversified macrofauna, altered when the reef undergoes disturbances. The goal of this study was to investigate the different sedimentary and biological changes associated with the presence of a S. alveolata reef over two contrasting seasons (late winter and late summer), and how these changes were linked. Three different sediments were considered: the engineered sediment (the actual reef), the associated sediment (the soft sediment surrounding the reef structures) and a control soft sediment (i.e. no reef structures in close proximity). Univariate and multivariate comparisons of grain-size distribution, soft sediment characteristics (organic matter content, chlorophyll a, pheopigments and carbohydrate concentrations) and macrofauna were conducted between the different sediment types at both seasons and between the two seasons for each sediment type. A distance-based redundancy analyses (dbRDA) was used to investigate the link between the different environmental parameters and the macrofauna assemblages. Finally, we focused on a disturbance continuum of the engineered sediments proxied by an increase in the mud present in these sediments. The effects of a continuous and increasing disturbance on the associated fauna were investigated using pairwise beta diversity indices (Sørensen and Bray-Curtis dissimilarities and their decomposition into turnover and nestedness). Results showed a significant effect of the reef on the local sediment distribution (coarser sediments compared to the control) and on the benthic primary production (higher in the associated sediments). At both seasons, S. alveolata biomass and sediment principal mode were the environmental parameters which best differentiated the engineered, associated and control sediment assemblages. These two parameters are under the ecosystem engineer's influence stressing its importance in structuring benthic macrofauna. Furthermore, in late summer but not in late winter, presence/absence and abundance-based beta diversity were positively correlated to our disturbance proxy (mud content) a tendency driven by a species replacement and a rise in the associated fauna density. Our first set of results highlight the importance of S. alveolata reefs as benthic primary production enhancers via their physical structure and their biological activity. The results obtained using beta diversity indices emphasize the importance of recruitment in structuring the reef's macrofauna and - paradoxically - the ecological value of S. alveolata degraded forms as biodiversity and recruitment promoters.

Transport rates of radiolytic substances into Europa's ocean: implications for the potential origin and maintenance of life.

PubMed

Greenberg, Richard

2010-04-01

Abstract Bombardment of the surface of Europa produces oxidants and other biologically useful substances, but they can only contribute to the habitability of the ocean if they are delivered down through the icy crust. Previous estimates of the thickness of the oxygenated layer of ice assumed that impact gardening is the dominant factor and concluded that the ocean may be habitable if the oxidant delivery time, via undefined mechanisms, is sufficiently short. Consideration of the types of processes that continually resurface Europa suggests that the oxygenated layer is thicker than approximately 300 m, far greater than the few meters indicated by impact gardening alone, and possibly includes the entire ice crust. The estimated delivery rate to the ocean is such that the oxygen levels could now be high enough to support macrofauna; and, at approximately 3 x 10(11) mol/yr of oxygen, it could maintain 3 million tons of macrofauna, assuming respiration rates similar to terrestrial marine organisms. These values are independent of any additional contributions due to possible photosynthesis. Initial formation of life would be difficult with so much oxygen, but the start of oxidant delivery into the ocean would have been delayed by 1-2 billion years while the crust became loaded with oxidants. In the ocean, this delay would have allowed time for prebiotic assemblages and anaerobic biological development prior to the increasing oxidant concentration to otherwise toxic levels.

A big data approach to macrofaunal baseline assessment, monitoring and sustainable exploitation of the seabed.

PubMed

Cooper, K M; Barry, J

2017-09-29

In this study we produce a standardised dataset for benthic macrofauna and sediments through integration of data (33,198 samples) from 777 grab surveys. The resulting dataset is used to identify spatial and temporal patterns in faunal distribution around the UK, and the role of sediment composition and other explanatory variables in determining such patterns. We show how insight into natural variability afforded by the dataset can be used to improve the sustainability of activities which affect sediment composition, by identifying conditions which should remain favourable for faunal recolonisation. Other big data applications and uses of the dataset are discussed.

Influence of macrofaunal assemblages and environmental heterogeneity on microphytobenthic production in experimental systems

PubMed Central

Dyson, Kirstie E; Bulling, Mark T; Solan, Martin; Hernandez-Milian, Gema; Raffaelli, David G; White, Piran C.L; Paterson, David M

2007-01-01

Despite the complexity of natural systems, heterogeneity caused by the fragmentation of habitats has seldom been considered when investigating ecosystem processes. Empirical approaches that have included the influence of heterogeneity tend to be biased towards terrestrial habitats; yet marine systems offer opportunities by virtue of their relative ease of manipulation, rapid response times and the well-understood effects of macrofauna on sediment processes. Here, the influence of heterogeneity on microphytobenthic production in synthetic estuarine assemblages is examined. Heterogeneity was created by enriching patches of sediment with detrital algae (Enteromorpha intestinalis) to provide a source of allochthonous organic matter. A gradient of species density for four numerically dominant intertidal macrofauna (Hediste diversicolor, Hydrobia ulvae, Corophium volutator, Macoma balthica) was constructed, and microphytobenthic biomass at the sediment surface was measured. Statistical analysis using generalized least squares regression indicated that heterogeneity within our system was a significant driving factor that interacted with macrofaunal density and species identity. Microphytobenthic biomass was highest in enriched patches, suggesting that nutrients were obtained locally from the sediment–water interface and not from the water column. Our findings demonstrate that organic enrichment can cause the development of heterogeneity which influences infaunal bioturbation and consequent nutrient generation, a driver of microphytobenthic production. PMID:17698480

Influence of macrofaunal assemblages and environmental heterogeneity on microphytobenthic production in experimental systems.

PubMed

Dyson, Kirstie E; Bulling, Mark T; Solan, Martin; Hernandez-Milian, Gema; Raffaelli, David G; White, Piran C L; Paterson, David M

2007-10-22

Despite the complexity of natural systems, heterogeneity caused by the fragmentation of habitats has seldom been considered when investigating ecosystem processes. Empirical approaches that have included the influence of heterogeneity tend to be biased towards terrestrial habitats; yet marine systems offer opportunities by virtue of their relative ease of manipulation, rapid response times and the well-understood effects of macrofauna on sediment processes. Here, the influence of heterogeneity on microphytobenthic production in synthetic estuarine assemblages is examined. Heterogeneity was created by enriching patches of sediment with detrital algae (Enteromorpha intestinalis) to provide a source of allochthonous organic matter. A gradient of species density for four numerically dominant intertidal macrofauna (Hediste diversicolor, Hydrobia ulvae, Corophium volutator, Macoma balthica) was constructed, and microphytobenthic biomass at the sediment surface was measured. Statistical analysis using generalized least squares regression indicated that heterogeneity within our system was a significant driving factor that interacted with macrofaunal density and species identity. Microphytobenthic biomass was highest in enriched patches, suggesting that nutrients were obtained locally from the sediment-water interface and not from the water column. Our findings demonstrate that organic enrichment can cause the development of heterogeneity which influences infaunal bioturbation and consequent nutrient generation, a driver of microphytobenthic production.

Ghost crab populations respond to changing morphodynamic and habitat properties on sandy beaches

NASA Astrophysics Data System (ADS)

Lucrezi, Serena

2015-01-01

The morphodynamic state and habitat properties of microtidal sandy beaches largely account for variations in macrofauna structure. In ecological theory, the habitat harshness hypothesis and the habitat safety hypothesis explain variations in macrofauna populations of the intertidal and supratidal zones of sandy beaches. The former hypothesis states that intertidal macrofauna should increase from reflective to dissipative beaches. The latter hypothesis supports the idea that supratidal species are more successful on reflective beaches, given their relative independence from the swash. However, trends in abundance of supratidal species, particularly crustaceans, have been unclear and further investigation is therefore needed. This study tested the two hypotheses on the largest invertebrate intertidal-to-supratidal crustacean on sandy beaches, namely the ghost crab (genus Ocypode). Variations in ghost crab burrow density, abundance, size and across-shore distribution were measured on four warm-temperate microtidal sandy beaches in KwaZulu-Natal, South Africa. Burrow numbers increased with beach morphodynamic state, while average burrow size decreased. The steepest, narrowest and most inundation-prone beach represented the least hospitable environment for the ghost crabs. The results that are reported here tend to support the habitat harshness hypothesis. However, the relevance of i) individual physical variables, ii) tidal action, and iii) the ecology of various species, in shaping ghost crab population dynamics, is also discussed. The results contribute to the knowledge regarding population dynamics of intertidal and supratidal crustaceans across beach types.

Impacts of dredged-material disposal on the coastal soft-bottom macrofauna, Saronikos Gulf, Greece.

PubMed

Katsiaras, N; Simboura, N; Tsangaris, C; Hatzianestis, I; Pavlidou, A; Kapsimalis, V

2015-03-01

Dredged sediments derived by the low course and estuary of the metropolitan river of Athens (Kifissos River) were dumped every day for 21 months to an open-sea site in the Saronikos Gulf. The spoil-ground and surrounding area was monitored prior, during and post to dumping for 24 months, over 6-month intervals. Dumping significantly changed the granulometry of the pre-existing superficial sediments to finer-grained only in the spoil ground and increased the sediment contamination load (aliphatic, polycyclic aromatic hydrocarbons and heavy metals) throughout the study area. Microtox® SPT showed that sediment toxicity levels were high at almost all sampling stations. During dumping, burial of natural soft-bottom habitats degraded severely the communities of the spoil-ground resulting in an almost azoic state, as well as significantly declined the species number and abundance of benthic communities in locations up to 3.2 km away from the spoil-ground, due to dispersion of the spoil and smothering. Benthic indices on the surrounding sites were significantly correlated with hydrocarbon concentrations and sediment toxicity levels. Post to dumping, the macrofauna communities of the spoil-ground were still significantly degraded, but the surrounding areas showed patterns of recovery. However, the high concentrations of aliphatic, polycyclic aromatic hydrocarbons and levels of toxicity persisted in the sediments after the ceasing of dumping operations in the study area, implying the ecological hazard imposed on the area. Copyright © 2014 Elsevier B.V. All rights reserved.

[Characteristics of soil macrofaunal community structure in secondary forest and forest plantations in western Qinling Mountains of Northwest China].

PubMed

Liu, Ji-Liang; Cao, Jing; Li, Shi-Jie; Pan, Chun-Lin; Pan, Cheng-Chen

2012-09-01

Long-term disturbance of human beings on secondary forest ecosystem would have profound impacts on belowground ecological processes, whereas the community structure and functional diversity of soil fauna would be sensitive to the changes of belowground ecological processes, with significance as an indicator of the changes. In this study, the method of hand-sorting was adopted to investigate the density of soil macrofaunal community in a secondary forest and the Pinus tabulaeformis, Larix kaempferi, Picea abie, and Picea asperata plantations of nearly 30 years old in Xiaolongshan forest area of western Qinling Mountains, and the PCA ordination and one-way ANOVA analysis were applied to analyze the community structure and trophic group composition of soil macrofauna in the five forest types. In the P. tabulaeformis and L. kaempferi plantations, the density of soil macrofaunal community was 3.0 and 2.1 times of that in the secondary forest, respectively, and the consumers/decomposers ratio of the community was obviously higher than that in the secondary forest. Among the plantations, P. tabulaeformis and L. kaempferi plantations had a significantly higher consumers/decomposers ratio of soil macrofaunal community than P. abies and P. asperata plantations. There was an obvious difference in community structure of soil macrofauna among the four plantations. The density of soil macrofaunal community in P. tabulaeformis and L. kaempferi plantations was 3.5 and 2.1 times higher than that in P. asperata plantation, respectively, whereas the group richness of soil macrofaunal community in P. tabulaeformis plantation was 1.5 times of that in P. abies and P. asperata plantations.

Impact of the temporal variation of oxygen contents in the water column on the biogeochemistry of the benthic zone

NASA Astrophysics Data System (ADS)

Rigaud, Sylvain; Deflandre, Bruno; Grenz, Christian; Pozzato, Lara; Cesbron, Florian; Meulé, Samuel; Bonin, Patricia; Michotey, Valérie; Mirleau, Pascal; Mirleau, Fatma; Knoery, Joel; Zuberer, Frédéric; Guillemain, Dorian; Marguerite, Sébatien; Mayot, Nicolas; Faure, Vincent; Grisel, Raphael; Radakovitch, Olivier

2017-04-01

The desoxygenation of the water column in coastal areas, refered as coastal hypoxia, is currently a growing phenomenon still particularly complex to predict. This is mainly due to the fact that the biogeochemical response of the benthic ecosystem to the variation of the oxygen contents in the water column remains poorly understood. Dissolved oxygen concentration is a key parameter controling the benthic micro- and macro-community as well as the biogeochemical reactions occuring in the surface sediment. More particularly, the variation over variable time scales (from hour to years) of the oxygen deficit may induce different pathways for biogeochemical processes such as the oxydation of freshly deposited organic matter and nutrients and metals recycling. This results in variable chemical fluxes at the sediment-water interface, that may in turn, support the eutrophication and desoxygenation of the aquatic system. Our study focus on the Berre lagoon, an eutrophicated mediterranean lagoon impacted by hypoxia events in the water column. Three stations, closely located but impacted by contrasted temporal variation of oxygen deficit in the water column were selected: one station with rare oxygen deficit and with functionnal macrofauna community, one station with almost permanent oxygen deficit and no macrofauna community and one intermediate station with seasonnal oxygen deficit and degraded macrofauna community. Each station was surveyed once during a same field survey while the intermediate station was surveyed seasonnaly. For each campaign, we report vertical profiles of the main chemical components (oxygen, nutrients, metals) along the water-column/sediment continuum, with an increased vertical resolution in the benthic zone using a multi-tool approach (high vertical resolution suprabenthic water sampler and microsensors profiler). In addition, total chemical fluxes at the sediment-water interface was obtained using benthic chambers. This dataset was used to evaluate the influence, of the oxygen concentrations (and its short and long-term variations) in the water column on the nature and location of the main biogeochemical reactions occuring in the benthic zone and the resulting fluxes at the sediment-water interface.

The Link between Microbial Diversity and Nitrogen Cycling in Marine Sediments Is Modulated by Macrofaunal Bioturbation

PubMed Central

Yazdani Foshtomi, Maryam; Braeckman, Ulrike; Derycke, Sofie; Sapp, Melanie; Van Gansbeke, Dirk; Sabbe, Koen; Willems, Anne; Vincx, Magda; Vanaverbeke, Jan

2015-01-01

Objectives The marine benthic nitrogen cycle is affected by both the presence and activity of macrofauna and the diversity of N-cycling microbes. However, integrated research simultaneously investigating macrofauna, microbes and N-cycling is lacking. We investigated spatio-temporal patterns in microbial community composition and diversity, macrofaunal abundance and their sediment reworking activity, and N-cycling in seven subtidal stations in the Southern North Sea. Spatio-Temporal Patterns of the Microbial Communities Our results indicated that bacteria (total and β-AOB) showed more spatio-temporal variation than archaea (total and AOA) as sedimentation of organic matter and the subsequent changes in the environment had a stronger impact on their community composition and diversity indices in our study area. However, spatio-temporal patterns of total bacterial and β-AOB communities were different and related to the availability of ammonium for the autotrophic β-AOB. Highest bacterial richness and diversity were observed in June at the timing of the phytoplankton bloom deposition, while richness of β-AOB as well as AOA peaked in September. Total archaeal community showed no temporal variation in diversity indices. Macrofauna, Microbes and the Benthic N-Cycle Distance based linear models revealed that, independent from the effect of grain size and the quality and quantity of sediment organic matter, nitrification and N-mineralization were affected by respectively the diversity of metabolically active β-AOB and AOA, and the total bacteria, near the sediment-water interface. Separate models demonstrated a significant and independent effect of macrofaunal activities on community composition and richness of total bacteria, and diversity indices of metabolically active AOA. Diversity of β-AOB was significantly affected by macrofaunal abundance. Our results support the link between microbial biodiversity and ecosystem functioning in marine sediments, and provided broad correlative support for the hypothesis that this relationship is modulated by macrofaunal activity. We hypothesized that the latter effect can be explained by their bioturbating and bio-irrigating activities, increasing the spatial complexity of the biogeochemical environment. PMID:26102286

Composition of abyssal macrofauna along the Vema Fracture Zone and the hadal Puerto Rico Trench, northern tropical Atlantic

NASA Astrophysics Data System (ADS)

Brandt, A.; Frutos, I.; Bober, S.; Brix, S.; Brenke, N.; Guggolz, T.; Heitland, N.; Malyutina, M.; Minzlaff, U.; Riehl, T.; Schwabe, E.; Zinkann, A.-C.; Linse, K.

2018-02-01

We analyzed composition and variations in benthic macrofaunal communities along a transect of the entire length of the Vema-Fracture Zone on board of RV Sonne (SO-237) between December 2014 and January 2015 in order to test whether the Mid-Atlantic Ridge serves as a barrier limiting benthic taxon distribution in the abyssal basins on both sides of the ridge or whether the fracture zone permits the migration of species between the western and eastern abyssal Atlantic basins. The Puerto Rico Trench, much deeper than the surrounding abyssal West Atlantic, was sampled to determine whether the biodiversity of its hadal macrofauna differs from that of the abyssal Atlantic. The composition of the macrofauna from the epibenthic sledge catches yielded a total of 21,332 invertebrates. Crustacea occurred most frequently (59%) with 12,538 individuals followed by Annelida (mostly Polychaeta) (26%) with 5491 individuals, Mollusca (7%) with 1458 individuals, Echinodermata (4%) with 778 individuals, Nematoda (2%) with 502 individuals and Chaetognatha (1%) with 152 and Porifera (1%) with 131 individuals. All other taxa occurred with overall less than ten individuals (Hemichordata, Phoronida, Priapulida, Brachiopoda, invertebrate Chordata, Echiurida, Foraminifera (here refereed to macrofaunal Komokiacea only), Chelicerata, Platyhelminthes). Within the Crustacea, Peracarida (62.6%) with 7848 individuals and Copepoda (36.1%) with 44,526 individuals were the most abundant taxa. Along the abyssal Vema-Fracture Zone macrofaunal abundances (ind./1000 m2) were generally higher on the eastern side, while the highest normalized abundance value was reported in the Puerto Rico Trench at abyssal station 14-1 2313 individuals/1000 m2. The lowest abundance was reported at station 11-4 with 120 ind./1000 m2 located at the western side of the Vema-Fracture Zone. The number of major macrofaunal taxa (phylum, class) ranged between five (stations 12-5, 13-4 and 13-5 at hadal depths in the Puerto Rico Trench) and 14 (station 9-8) in the western abyssal basin of the Vema-Fracture Zone. Differences are seen in the distribution of Porifera at macrofaunal level between eastern and western sides of the Vema-Fracture Zone. Macrofaunal composition of the study area is compared with data from other expeditions in the Atlantic and the northwest Pacific Ocean.

Patterns of Abundance of Seagrasses and Associated Infaunal Communities at Inhaca Island, Mozambique

NASA Astrophysics Data System (ADS)

Paula, J.; Fidalgo Ecosta, P.; Martins, A.; Gove, D.

2001-09-01

This study was conducted at Inhaca Island, south Mozambique, and focused on three different seagrass associations, dominated respectively by Thalassodendron ciliatum, Thalassia hemprichii and Zostera capensis. The main objective of this study was to compare the three seagrass associations, in what concerns vegetal and associated infaunal communities biomass. The approach was a nested design, which intended to provide information on seasonal effects and variability at decreasing spatial scales. Nested ANOVA was performed for all biological and porewater parameters and a cluster analysis of different biotic and abiotic parameters was performed. Nutrient concentration was consistently higher during the dry period as well as mean values of organic matter. Consistently lower values of chlorophyll a (chl a) were obtained at T. hemprichii meadow sites and the highest values were found at Z. capensis meadow. Phaeopigments have shown an opposite pattern when compared to chl a, and average values were consistently higher during the dry season. There were no net differences of seagrass standing crop during both sampled seasons, however at meadow level major differences were found, and higher biomass was obtained at T. ciliatum meadow, followed by T. hemprichii. Mean values of epibiota have shown that higher biomass was obtained at T. ciliatum meadow, the remaining meadows presented very low values. Meiofauna biomass showed fluctuations between seagrass meadows, stations and also between seasons. Macrofauna biomass showed clear fluctuations between seasons, being strongly more homogeneous during the dry season and highly variable in the wet season. ANOVA results have shown different significance at the different levels of the analysis, suggesting different spatial and temporal patterns and interactions between parameters. The dendrogram produced two main groups of variables, the first one comprised of OM, phaeopigments, nitrites, nitrates, meiofauna, grain size and chl a. The second group comprises pH, macrofauna, ammonia, both seagrass components and epibiota on above-ground seagrass fraction. These two groups of parameters may correspond to different functional components of the seagrass ecosystem. The sediment biotic structure seems largely dependent on detritus-based chains, and has a high degree of spatial variability. On the other hand, macrofauna seems to be more related to the direct influence of seagrass standing crop, probably caused by the increased habitat complexity provided by higher seagrass biomass.

Macroinvertebrates communities associated with the decomposition of Phragmites australis and Fucus vesiculosus in transitional systems

NASA Astrophysics Data System (ADS)

Lopes, Marta Lobão; Martins, Patrícia; Rodrigues, Ana Maria; Quintino, Victor

2013-10-01

The decomposition rates of a macrophyte (Phragmites australis) and an alga (Fucus vesiculosus) and the associated macrofauna communities were studied along a full salinity gradient, using the leaf-bag technique and four sampling times (days 3, 7, 15 and 30). A control was set up using an artificial substrate. A subsequent study conducted in the mesohaline part of the salinity gradient also included empty bags as procedure control. The decay rates of the alga and the macrophyte were significantly different, the alga decaying faster, and presented an opposite trend along the salinity gradient, with the faster decay rate for reed in the less saline areas and for the alga in the euhaline part of the gradient. The fauna associated with the decaying and the artificial substrate showed equally well the benthic succession from the marine to the freshwater areas, in all sampling times. Arthropods were dominant in all substrates along the estuarine gradient and replaced by annelids in freshwater. No significant differences were found between the benthic communities associated with P. australis and F. vesiculosus, despite the strong differences in the decay rates, suggesting that these do not seem to be primarily related to the benthic colonizers. Although the organic substrates sustained a more abundant fauna, the benthic communities did not show significant differences between the organic and the artificial substrates, especially at the level of the species composition, suggesting that the macroinvertebrates may colonize both substrates to feed on the biofilm and/or to seek shelter. The strongly impoverished benthic community sampled by the empty bags reinforced this idea.

Long-term changes in the benthic communities of the Pomeranian Bay (Southern Baltic Sea)

NASA Astrophysics Data System (ADS)

Kube, J.; Gosselck, F.; Powilleit, M.; Warzocha, J.

1998-02-01

Long-term changes in the macrofauna of the Pomeranian Bay were studied by comparing survey data from the 1950s, 1980s, and 1990s. The study area has undergone significant eutrophication during the period of investigation. Biomass of filter-feeding bivalves increased significantly. Spatial distribution patterns of several species have changed. Strong decreases in species richness were caused by oxygen depletion at stations deeper than 15 m. Saduria entomon, Monoporeia affinis, and Pontoporeia femorata vanished entirely between 1981 and 1993. Although a causal relationship between simultaneous increases of nutrient levels and macrobenthic biomass cannot be verified, eutrophication is proposed to be the major process affecing changes in macrofauna assemblages. In addition, changes in hydrography and climate increased frequency and severity of oxygen depletion events in the Pomeranian Bay since the mid 1980s.

The role of spatial heterogeneity of the environment in soil fauna recovery after fires

NASA Astrophysics Data System (ADS)

Gongalsky, K. B.; Zaitsev, A. S.

2016-12-01

Forest fires are almost always heterogeneous, leaving less-disturbed sites that are potentially suitable as habitats for soil-dwelling creatures. The recovery of large soil animal communities after fires is therefore dependent on the spatial structure of the burned habitats. The role of locally less disturbed sites in the survival of soil macrofauna communities along with traditionally considered immigration from the surrounding undisturbed habitats is shown by the example of burnt areas located in three geographically distant regions of European Russia. Such unburned soil cover sites (perfugia) occupy 5-10% of the total burned habitats. Initially, perfugia are characterized by much higher (200-300% of the average across a burned area) diversity and abundance of soil fauna. A geostatistical method made it possible to estimate the perfugia size for soil macrofauna at 3-8 m.

Provenance analysis and tectonic setting of the Triassic clastic deposits in Western Chukotka, Northeast Russia

NASA Astrophysics Data System (ADS)

Tuchkova, M. I.; Sokolov, S.; Kravchenko-Berezhnoy, I. R.

2009-09-01

The study area is part of the Anyui subterrane of the Chukotka microplate, a key element in the evolution of the Amerasia Basin, located in Western Chukotka, Northeast Russia. The subterrane contains variably deformed, folded and cleaved rhythmic Triassic terrigenous deposits which represent the youngest stage of widespread marine deposition which form three different complexes: Lower-Middle Triassic, Upper Triassic (Carnian) and Upper Triassic (Norian). All of the complexes are represented by rhythmic interbeds of sandstone, siltstone and mudstone. Macrofaunas are not numerous, and in some cases deposits are dated by analogy to, or by their relationship with, other units dated with macrofaunas. The deposits are composed of pelagic sediments, low-density flows, high-density flows, and shelf facies associations suggesting that sedimentation was controlled by deltaic progradation on a continental shelf and subsequent submarine fan sedimentation at the base of the continental slope. Petrographic study of the mineral composition indicates that the sandstones are lithic arenites. Although the Triassic sandstones appear similar in outcrop and by classification, the constituent rock fragments are of diverse lithologies, and change in composition from lower grade metamorphic rocks in the Lower-Middle Triassic to higher grade metamorphic rocks in the Upper Triassic. This change suggests that the Triassic deposits represent an unroofing sequence as the source of the clastic material came from more deeply buried rocks with time.

Effects of benthos, temperature, and dose on the fate of hexabromocyclododecane in experimental coastal ecosystems.

PubMed

Bradshaw, Clare; Strid, Anna; von Stedingk, Hans; Gustafsson, Kerstin

2015-06-01

The authors studied the fate of the brominated flame retardant hexabromocyclododecane (HBCDD) added in a particulate suspension to experimental ecosystems assembled from brackish (Baltic Sea) coastal bays. Two experiments examined how benthic macrofauna (over 21 d) and increased temperature (14 d) affected HBCDD concentrations and fractionation of α, β, and γ diastereomers in the water, sediment, and biota. A third experiment run over 3 seasons (231 d), studied the effect of HBCDD dose on the same endpoints. In all treatments of the 3 experiments, HBCDD partitioned mainly to the sediment, and this proportion increased with time. Presence of macrofauna tended to increase the HBCDD concentration in the sediment and decreased its concentration in the water. Increased temperature (+ 5°C) decreased the amount of HBCDD in sediment and water but not in the filter- and deposit-feeding infaunal bivalves (Macoma balthica). The partitioning between water, sediment, and biota was not concentration dependent. In all treatments, sediment became enriched in γ-HBCDD, M. balthica in α-HBCDD, and water in α- and β-HBCDD. Bioaccumulation of HBCDD in M. balthica was high in all experiments (log biota-sediment accumulation factor [BSAF] > 1.25), the α diastereomer contributing the most (log BSAF 2.1-5.2). There is a risk of trophic transfer of HBCDD from benthic to pelagic food webs, as well as secondary poisoning of marine consumers. © 2015 SETAC.

Ecology of exposed sandy beaches in northern Spain: Environmental factors controlling macrofauna communities

NASA Astrophysics Data System (ADS)

Lastra, M.; de La Huz, R.; Sánchez-Mata, A. G.; Rodil, I. F.; Aerts, K.; Beloso, S.; López, J.

2006-02-01

Thirty-four exposed sandy beaches on the northern coast of Spain (from 42°11' to 43°44'N, and from 2°04' to 8°52' W; ca. 1000 km) were sampled over a range of beach sizes, beach morphodynamics and exposure rates. Ten equally spaced intertidal shore levels along six replicated transects were sampled at each beach. Sediment and macrofauna samples were collected using corers to a depth of 15 cm. Morphodynamic characteristics such as the beach face slope, wave environment, exposure rates, Dean's parameter and Beach State Index were estimated. Biotic results indicated that in all the beaches the community was dominated by isopods, amphipods and polychaetes, mostly belonging to the detritivorous-opportunistic trophic group. The number of intertidal species ranged from 9 to 31, their density being between 31 and 618 individuals m - 2 , while individuals per linear metre (m - 1 ) ranged from 4962 to 17 2215. The biomass, calculated as total ash-free dry weight (AFDW) varied from 0.027 to 2.412 g m - 2 , and from 3.6 to 266.6 g m - 1 . Multiple regression analysis indicated that number of species significantly increased with proximity to the wind-driven upwelling zone located to the west, i.e., west-coast beaches hosted more species than east-coast beaches. The number of species increased with decreasing mean grain size and increasing beach length. The density of individuals m - 2 increased with decreasing mean grain size, while biomass m - 2 increased with increasing food availability estimated as chlorophyll-a concentration in the water column of the swash zone. Multiple-regression analysis indicated that chlorophyll-a in the water column increased with increasing western longitude. Additional insights provided by single-regression analysis showed a positive relationship between the number of species and chlorophyll-a, while increasing biomass occurred with increasing mean grain size of the beach. The results indicate that community characteristics in the exposed sandy beaches studied are affected by physical characteristics such as sediment size and beach length, but also by other factors dependent on coastal processes, such as food availability in the water column.

Effects of tropical ecosystem engineers on soil quality and crop performance under different tillage and residue management

NASA Astrophysics Data System (ADS)

Pulleman, Mirjam; Paul, Birthe; Fredrick, Ayuke; Hoogmoed, Marianne; Hurisso, Tunsisa; Ndabamenye, Telesphore; Saidou, Koala; Terano, Yusuke; Six, Johan; Vanlauwe, Bernard

2014-05-01

Feeding a future global population of 9 billion will require a 70-100% increase in food production, resulting in unprecedented challenges for agriculture and natural resources, especially in Sub-saharan Africa (SSA). Agricultural practices that contribute to sustainable intensification build on beneficial biological interactions and ecosystem services. Termites are the dominant soil ecosystem engineers in arid to sub-humid tropical agro-ecosystems. Various studies have demonstrated the potential benefits of termites for rehabilitation of degraded and crusted soils and plant growth in semi-arid and arid natural ecosystems. However, the contribution of termites to agricultural productivity has hardly been experimentally investigated, and their role in Conservation Agriculture (CA) systems remains especially unclear. Therefore, this study aimed to quantify the effects of termites and ants on soil physical quality and crop productivity under different tillage and residue management systems in the medium term. A randomized block trial was set up in sub-humid Western Kenya in 2003. Treatments included a factorial combination of residue retention and removal (+R/-R) and conventional and reduced tillage (+T/-T) under a maize (Zea mays L.) and soybean (Glyxine max. L.) rotation. A macrofauna exclusion experiment was superimposed in 2005 as a split-plot factor (exclusion +ins; inclusion -ins) by regular applications of pesticides (Dursban and Endosulfan) in half of the plots. Macrofauna abundance and diversity, soil aggregate fractions, soil carbon contents and crop yields were measured between 2005 and 2012 at 0-15 cm and 15-30 cm soil depths. Termites were the most important macrofauna species, constituting between 48-63% of all soil biota, while ants were 13-34%, whereas earthworms were present in very low numbers. Insecticide application was effective in reducing termites (85-56% exclusion efficacy) and earthworms (87%), and less so ants (49-81%) at 0-15 cm soil depth. Termite diversity was low - Pseudacanthotermes sp. (33%), Microtermes sp. (24%) and Pseudacanthotermes militaris (22%) were dominant. All three species belong to the family of Macrotermitianae who are feeding on litter, grass and wood from the soil surface. Macrofauna exclusion did not have a significant effect on soil aggregate stability or soil C at any soil depth which might be attributed to the low residue retention and the high spatial variability in termite foraging activity. Maize and soybean yields strongly increased with macrofauna exclusion (P<0.001). This may be explained by the fact that all three identified termite species are major crop pests which cause lodging of maize plans as observed in this experiment. This study underlines the importance of termite functional group for the effect on soil quality and crop productivity in agro-ecosystems. Future research should contribute to develop sustainable termite management strategies that control detrimental species while conserving beneficial soil ecosystem engineers based on ecological knowledge of termite traits.

Faunal responses to oxygen gradients on the Pakistan margin: A comparison of foraminiferans, macrofauna and megafauna

NASA Astrophysics Data System (ADS)

Gooday, A. J.; Levin, L. A.; Aranda da Silva, A.; Bett, B. J.; Cowie, G. L.; Dissard, D.; Gage, J. D.; Hughes, D. J.; Jeffreys, R.; Lamont, P. A.; Larkin, K. E.; Murty, S. J.; Schumacher, S.; Whitcraft, C.; Woulds, C.

2009-03-01

The Pakistan Margin is characterised by a strong mid-water oxygen minimum zone (OMZ) that intercepts the seabed at bathyal depths (150-1300 m). We investigated whether faunal abundance and diversity trends were similar among protists (foraminiferans and gromiids), metazoan macrofauna and megafauna along a transect (140-1850 m water depth) across the OMZ during the 2003 intermonsoon (March-May) and late/post-monsoon (August-October) seasons. All groups exhibited some drop in abundance in the OMZ core (250-500 m water depth; O 2: 0.10-0.13 mL L -1=4.46-5.80 μM) but to differing degrees. Densities of foraminiferans >63 μm were slightly depressed at 300 m, peaked at 738 m, and were much lower at deeper stations. Foraminiferans >300 μm were the overwhelmingly dominant macrofaunal organisms in the OMZ core. Macrofaunal metazoans reached maximum densities at 140 m depth, with additional peaks at 850, 940 and 1850 m where foraminiferans were less abundant. The polychaete Linopherus sp. was responsible for a macrofaunal biomass peak at 950 m. Apart from large swimming animals (fish and natant decapods), metazoan megafauna were absent between 300 and 900 m (O 2 <0.14-0.15 mL L -1=6.25-6.69 μM) but were represented by a huge, ophiuroid-dominated abundance peak at 1000 m (O 2 ˜0.15-0.18 mL L -1=6.69-8.03 μM). Gromiid protists were confined largely to depths below 1150 m (O 2 >0.2 mL L -1=8.92 μM). The progressively deeper abundance peaks for foraminiferans (>63 μm), Linopherus sp. and ophiuroids probably represent lower OMZ boundary edge effects and suggest a link between body size and tolerance of hypoxia. Macro- and megafaunal organisms collected between 800 and 1100 m were dominated by a succession of different taxa, indicating that the lower part of the OMZ is also a region of rapid faunal change. Species diversity was depressed in all groups in the OMZ core, but this was much more pronounced for macrofauna and megafauna than for foraminiferans. Oxygen levels strongly influenced the taxonomic composition of all faunal groups. Calcareous foraminiferans dominated the seasonally and permanently hypoxic sites (136-300 m); agglutinated foraminiferans were relatively more abundant at deeper stations where oxygen concentrations were >0.13 mL L -1(=5.80 μM). Polychaetes were the main macrofaunal taxon within the OMZ; calcareous macrofauna and megafauna (molluscs and echinoderms) were rare or absent where oxygen levels were lowest. The rarity of larger animals between 300 and 700 m on the Pakistan Margin, compared with the abundant macrofauna in the OMZ core off Oman, is the most notable contrast between the two sides of the Arabian Sea. This difference probably reflects the slightly higher oxygen levels and better food quality on the western side.

Meiofauna increases bacterial denitrification in marine sediments.

PubMed

Bonaglia, S; Nascimento, F J A; Bartoli, M; Klawonn, I; Brüchert, V

2014-10-16

Denitrification is a critical process that can alleviate the effects of excessive nitrogen availability in aquatic ecosystems subject to eutrophication. An important part of denitrification occurs in benthic systems where bioturbation by meiofauna (invertebrates <1 mm) and its effect on element cycling are still not well understood. Here we study the quantitative impact of meiofauna populations of different abundance and diversity, in the presence and absence of macrofauna, on nitrate reduction, carbon mineralization and methane fluxes. In sediments with abundant and diverse meiofauna, denitrification is double that in sediments with low meiofauna, suggesting that meiofauna bioturbation has a stimulating effect on nitrifying and denitrifying bacteria. However, high meiofauna densities in the presence of bivalves do not stimulate denitrification, while dissimilatory nitrate reduction to ammonium rate and methane efflux are significantly enhanced. We demonstrate that the ecological interactions between meio-, macrofauna and bacteria are important in regulating nitrogen cycling in soft-sediment ecosystems.

A comparison of two nitrification inhibitors used to measure nitrification rates in estuarine sediments

USGS Publications Warehouse

Caffrey, J.M.; Miller, L.G.

1995-01-01

Nitrification rates were measured using intact sediment cores from South San Francisco Bay and two different nitrification inhibitors: acetylene and methyl fluoride. Sediment oxygen consumption and ammonium and nitrate fluxes were also measured in these cores. Four experiments were conducted in the spring, and one in the fall of 1993. There was no significant difference in nitrification rates measured using the two inhibitors, which suggests that methyl fluoride can be used as an effective inhibitor of nitrification. Nitrification was positively correlated with sediment oxygen consumption and numbers of macrofauna. This suggests that bioturbation by macrofauna is an important control of nitrification rates. Irrigation by the tube-dwelling polychaete, Asychis elongata, which dominates the benthic biomass at this location, appears particularly important. Ammonium fluxes out of the sediment were greatest about one week after the spring bloom, while nitrification peaked about one month later.

Silicified sea life - Macrofauna and palaeoecology of the Neuburg Kieselerde Member (Cenomanian to Lower Turonian Wellheim Formation, Bavaria, southern Germany)

NASA Astrophysics Data System (ADS)

Schneider, Simon; Jager, Manfred; Kroh, Andreas; Mitterer, Agnes; Niebuhr, Birgit; Vodrazka, Radek; Wilmsen, Markus; Wood, Christopher J.; Zagorsk, Kamil

2013-12-01

Schneider, S., Jager, M., Kroh, A., Mitterer, A., Niebuhr, B., Vodražka, R., Wilmsen, M., Wood, C.J. and Zagoršek, K. 2013. Silicified sea life - Macrofauna and palaeoecology of the Neuburg Kieselerde Member (Cenomanian to Lower Turonian Wellheim Formation, Bavaria, southern Germany). Acta Geologica Polonica, 63(4), 555-610. Warszawa. With approximately 100 species, the invertebrate macrofauna of the Neuburg Kieselerde Member of the Wellheim Formation (Bavaria, southern Germany) is probably the most diverse fossil assemblage of the Danubian Cretaceous Group. Occurring as erosional relicts in post-depositional karst depressions, both the Cretaceous sediments and fossils have been silicified during diagenesis. The Neuburg Kieselerde Member, safely dated as Early Cenomanian to Early Turonian based on inoceramid bivalve biostratigraphy and sequence stratigraphy, preserves a predominantly soft-bottom community, which, however, is biased due to near-complete early diagenetic loss of aragonitic shells. The community is dominated by epifaunal and semi-infaunal bivalves as well as sponges that settled on various (bio-) clasts, and may widely be split into an early bivalve-echinoid assemblage and a succeeding sponge-brachiopod assemblage. In addition to these groups we document ichnofauna, polychaete tubes, nautilids and bryozoans. The fauna provides evidence of a shallow to moderately deep, calm, fully marine environment, which is interpreted as a largescale embayment herein. The fauna of the Neuburg Kieselerde Member is regarded as an important archive of lower Upper Cretaceous sea-life in the surroundings of the Mid-European Island.

[Contribution of soil fauna to the mass loss of Betula albosinensis leaf litter at early decomposition stage of subalpine forest litter in western Sichuan].

PubMed

Xia, Lei; Wu, Fu-Zhong; Yang, Wan-Qin; Tan, Bo

2012-02-01

In order to quantify the contribution of soil fauna to the decomposition of birch (Betula albosinensis) leaf litter in subalpine forests in western Sichuan of Southwest China during freeze-thaw season, a field experiment with different mesh sizes (0.02, 0.125, 1 and 3 mm) of litterbags was conducted in a representative birch-fir (Abies faxoniana) forest to investigate the mass loss rate of the birch leaf litter from 26 October, 2010 to 18 April, 2011, and the contributions of micro-, meso- and macro-fauna to the decomposition of the leaf litter. Over the freeze-thaw season, 11.8%, 13.2%, 15.4% and 19.5% of the mass loss were detected in the litterbags with 0.02, 0. 125, 1 and 3 mm mesh sizes, respectively. The total contribution of soil fauna to the litter decomposition accounted for 39.5% of the mass loss, and the taxa and individual relative density of the soil fauna in the litterbags had the similar variation trend with that of the mass loss rate. The contribution rate of soil fauna to the leaf litter mass loss showed the order of micro- < meso- < macro-fauna, with the highest contribution of micro-fauna (7.9%), meso-fauna (11.9%), and macro-fauna (22.7%) at the onset of freezing stage, deeply frozen stage, and thawing stage, respectively. The results demonstrated that soil fauna played an important role in the litter decomposition in subalpine forests of western Sichuan during freeze-thaw season.

Impacts of exotic mangrove forests and mangrove deforestation on carbon remineralization and ecosystem functioning in marine sediments

USGS Publications Warehouse

Sweetman, A.K.; Middelburg, J.J.; Berle, A.M.; Bernardino, A.F.; Schander, C.; Demopoulos, A.W.J.; Smith, C.R.

2010-01-01

To evaluate how mangrove invasion and removal can modify benthic carbon cycling processes and ecosystem functioning, we used stable-isotopically labelled algae as a deliberate tracer to quantify benthic respiration and C-flow through macrofauna and bacteria in sediments collected from (1) an invasive mangrove forest, (2) deforested mangrove sites 2 and 6 years after removal of above-sediment mangrove biomass, and (3) two mangrove-free, control sites in the Hawaiian coastal zone. Sediment oxygen consumption (SOC) rates were significantly greater in the mangrove and mangrove removal site experiments than in controls and were significantly correlated with total benthic (macrofauna and bacteria) biomass and sedimentary mangrove biomass (SMB). Bacteria dominated short-term C-processing of added microalgal-C and benthic biomass in sediments from the invasive mangrove forest habitat. In contrast, macrofauna were the most important agents in the short-term processing of microalgal-C in sediments from the mangrove removal and control sites. Mean faunal abundance and short term C-uptake rates in sediments from both removal sites were significantly higher than in control cores, which collectively suggest that community structure and short-term C-cycling dynamics in habitats where mangroves have been cleared can remain fundamentally different from un-invaded mudflat sediments for at least 6-yrs following above-sediment mangrove removal. In summary, invasion by mangroves can lead to large shifts in benthic ecosystem function, with sediment metabolism, benthic community structure and short-term C-remineralization dynamics being affected for years following invader removal. ?? 2010 Author(s).

Cretaceous-Tertiary findings, paradigms and problems

NASA Technical Reports Server (NTRS)

Officer, C. B.; Drake, C. L.

1988-01-01

The asteroid hypothesis has stimulated numerous studies of the paleontological record at Cretaceous/Tertiary time as well as of geological indicators of environmental crisis preserved in the rock record. Both extinctions and geological anomalies often occur at times that do not appear to be synchronous or instantaneous. The record includes paleontological indicators of dinosaurs, terrestrial flora, marine planktonic organisms, and shallow water marine macrofauna and geological phenomena include occurrences of iridium and other platinum metals, trace elements, clay mineralogy, shocked minerals, soot, microspherules, and isotopes of osmium, strontium and carbon. These findings are reviewed in the context of the alternate hypotheses of an exogenic cause, involving either a single asteroid impact or multiple commentary impacts, and an endogenic cause, involving intense global volcanism and major sea level regression.

Selective suppression of harmful cyanobacteria in an entire lake with hydrogen peroxide.

PubMed

Matthijs, Hans C P; Visser, Petra M; Reeze, Bart; Meeuse, Jeroen; Slot, Pieter C; Wijn, Geert; Talens, Renée; Huisman, Jef

2012-04-01

Although harmful cyanobacteria form a major threat to water quality, few methods exist for the rapid suppression of cyanobacterial blooms. Since laboratory studies indicated that cyanobacteria are more sensitive to hydrogen peroxide (H(2)O(2)) than eukaryotic phytoplankton, we tested the application of H(2)O(2) in natural waters. First, we exposed water samples from a recreational lake dominated by the toxic cyanobacterium Planktothrix agardhii to dilute H(2)O(2). This reduced the photosynthetic vitality by more than 70% within a few hours. Next, we installed experimental enclosures in the lake, which revealed that H(2)O(2) selectively killed the cyanobacteria without major impacts on eukaryotic phytoplankton, zooplankton, or macrofauna. Based on these tests, we introduced 2 mg L(-1) (60 μM) of H(2)O(2) homogeneously into the entire water volume of the lake with a special dispersal device, called the water harrow. The cyanobacterial population as well as the microcystin concentration collapsed by 99% within a few days. Eukaryotic phytoplankton (including green algae, cryptophytes, chrysophytes and diatoms), zooplankton and macrofauna remained largely unaffected. Following the treatment, cyanobacterial abundances remained low for 7 weeks. Based on these results, we propose the use of dilute H(2)O(2) for the selective elimination of harmful cyanobacteria from recreational lakes and drinking water reservoirs, especially when immediate action is urgent and/or cyanobacterial control by reduction of eutrophication is currently not feasible. A key advantage of this method is that the added H(2)O(2) degrades to water and oxygen within a few days, and thus leaves no long-term chemical traces in the environment. Copyright © 2011 Elsevier Ltd. All rights reserved.

Contribution of soil fauna to soil functioning in degraded environments: a multidisciplinary approach

NASA Astrophysics Data System (ADS)

Gargiulo, Laura; Mele, Giacomo; Moradi, Jabbar; Kukla, Jaroslav; Jandová, Kateřina; Frouz, Jan

2016-04-01

The restoration of the soil functions is essential for the recovery of highly degraded sites and, consequently, the study of the soil fauna role in the soil development in such environments has great potential from a practical point of view. The soils of the post-mining sites represent unique models for the study of the natural ecological succession because mining creates similar environments characterized by the same substrate, but by different ages according to the year of closure of mines. The aim of this work was to assess the contribution of different species of macrofauna on the evolution of soil structure and on the composition and activity of the microbial community in soil samples subjected to ecological restoration or characterized by spontaneous ecological succession. For this purpose, an experimental test was carried out in two sites characterized by different post-mining conditions: 1) natural succession, 2) reclamation with planting trees. These sites are located in the post-mining area of Sokolov (Czech Republic). For the experimental test repacked soil cores were prepared in laboratory with sieved soil sampled from the two sites. The soil cores were prepared maintaining the sequence of soil horizons present in the field. These samples were inoculated separately with two genera of earthworms (Lumbricus and Aporrectodea) and two of centipedes (Julida and Polydesmus). In particular, based on their body size, were inoculated for each cylinder 2 individuals of millipedes, 1 individual of Lumbricus and 4 individuals of Aporrectodea. For each treatment and for control samples 5 replicates were prepared and all samples were incubated in field for 1 month in the two original sampling sites. After the incubation the samples were removed from the field and transported in laboratory in order to perform the analysis of microbial respiration, of PLFA (phospholipid-derived fatty acids) and ergosterol contents and finally for the characterization of soil structure. All replicates were subjected to soil respiration measurement by means of chemical titration method. Then some replicates were destructively analyzed for PLFA and ergosterol and others were used for the 3D soil image analysis of the soil pore system. The soil cores were imaged using X-ray microtomography and three-dimensional image processing was performed in order to obtain 3D reconstructions and preliminary analysis of the identified biopores. The experimental approach used in this multidisciplinary study showed a promising potential to provide new useful information about the widely differentiated contribution of many types of macrofauna to the formation of the soil pore system and to the development of the soil microbial functions in different types of environments.

Improved Methods for Capture, Extraction, and Quantitative Assay of Environmental DNA from Asian Bigheaded Carp (Hypophthalmichthys spp.)

PubMed Central

Turner, Cameron R.; Miller, Derryl J.; Coyne, Kathryn J.; Corush, Joel

2014-01-01

Indirect, non-invasive detection of rare aquatic macrofauna using aqueous environmental DNA (eDNA) is a relatively new approach to population and biodiversity monitoring. As such, the sensitivity of monitoring results to different methods of eDNA capture, extraction, and detection is being investigated in many ecosystems and species. One of the first and largest conservation programs with eDNA-based monitoring as a central instrument focuses on Asian bigheaded carp (Hypophthalmichthys spp.), an invasive fish spreading toward the Laurentian Great Lakes. However, the standard eDNA methods of this program have not advanced since their development in 2010. We developed new, quantitative, and more cost-effective methods and tested them against the standard protocols. In laboratory testing, our new quantitative PCR (qPCR) assay for bigheaded carp eDNA was one to two orders of magnitude more sensitive than the existing endpoint PCR assays. When applied to eDNA samples from an experimental pond containing bigheaded carp, the qPCR assay produced a detection probability of 94.8% compared to 4.2% for the endpoint PCR assays. Also, the eDNA capture and extraction method we adapted from aquatic microbiology yielded five times more bigheaded carp eDNA from the experimental pond than the standard method, at a per sample cost over forty times lower. Our new, more sensitive assay provides a quantitative tool for eDNA-based monitoring of bigheaded carp, and the higher-yielding eDNA capture and extraction method we describe can be used for eDNA-based monitoring of any aquatic species. PMID:25474207

Improved methods for capture, extraction, and quantitative assay of environmental DNA from Asian bigheaded carp (Hypophthalmichthys spp.).

PubMed

Turner, Cameron R; Miller, Derryl J; Coyne, Kathryn J; Corush, Joel

2014-01-01

Indirect, non-invasive detection of rare aquatic macrofauna using aqueous environmental DNA (eDNA) is a relatively new approach to population and biodiversity monitoring. As such, the sensitivity of monitoring results to different methods of eDNA capture, extraction, and detection is being investigated in many ecosystems and species. One of the first and largest conservation programs with eDNA-based monitoring as a central instrument focuses on Asian bigheaded carp (Hypophthalmichthys spp.), an invasive fish spreading toward the Laurentian Great Lakes. However, the standard eDNA methods of this program have not advanced since their development in 2010. We developed new, quantitative, and more cost-effective methods and tested them against the standard protocols. In laboratory testing, our new quantitative PCR (qPCR) assay for bigheaded carp eDNA was one to two orders of magnitude more sensitive than the existing endpoint PCR assays. When applied to eDNA samples from an experimental pond containing bigheaded carp, the qPCR assay produced a detection probability of 94.8% compared to 4.2% for the endpoint PCR assays. Also, the eDNA capture and extraction method we adapted from aquatic microbiology yielded five times more bigheaded carp eDNA from the experimental pond than the standard method, at a per sample cost over forty times lower. Our new, more sensitive assay provides a quantitative tool for eDNA-based monitoring of bigheaded carp, and the higher-yielding eDNA capture and extraction method we describe can be used for eDNA-based monitoring of any aquatic species.

Potential Effects of Climate Change on the Water Level, Flora and Macro-fauna of a Large Neotropical Wetland

PubMed Central

Úbeda, Bárbara; Di Giacomo, Adrian S.; Neiff, Juan José; Loiselle, Steven A.; Guadalupe Poi, Alicia S.; Gálvez, José Ángel; Casco, Silvina; Cózar, Andrés

2013-01-01

Possible consequences of climate change in one of the world’s largest wetlands (Ibera, Argentina) were analysed using a multi-scale approach. Climate projections coupled to hydrological models were used to analyse variability in wetland water level throughout the current century. Two potential scenarios of greenhouse gas emissions were explored, both resulting in an increase in the inter-annual fluctuations of the water level. In the scenario with higher emissions, projections also showed a long-term negative trend in water-level. To explore the possible response of biota to such water-level changes, species-area relationships of flora and aerial censuses of macro-fauna were analysed during an extraordinary dry period. Plant species richness at the basin scale was found to be highly resistant to hydrological changes, as the large dimension of the wetland acts to buffer against the water-level variations. However, local diversity decreased significantly with low water levels, leading to the loss of ecosystem resilience to additional stressors. The analysis of macro-fauna populations suggested that wetland provides refuge, in low water periods, for the animals with high dispersal ability (aquatic and migratory birds). On the contrary, the abundance of animals with low dispersal ability (mainly herbivorous species) was negatively impacted in low water periods, probably because they are required to search for alternative resources beyond the wetland borders. This period of resource scarcity was also related to increased mortality of large mammals (e.g. marsh deer) around water bodies with high anthropogenic enrichment and cyanobacteria dominance. The synergy between recurrent climatic fluctuations and additional stressors (i.e. biological invasions, eutrophication) presents an important challenge to the conservation of neotropical wetlands in the coming decades. PMID:23874446

A comparative molecular and isotopic investigation of seep carbonates from mussel and tubeworm environments of the Gulf of Mexico

NASA Astrophysics Data System (ADS)

Feng, D.; Guan, H.; Wu, N.; Chen, D.

2017-12-01

At deep-sea hydrocarbon seeps, macrofauna such as mussels and tubeworms and authigenic carbonate outcrops are common. It has been suggested that the distinct metabolic process of the macrofauna could modify the sedimentary geochemistry of their ambient environments. To better understand if the differences in the geochemical environments of mussels and tubeworms can be archived in the associated carbonates, lipid biomarker inventory and compound-specific isotopes of the carbonates from mussel and tubeworm environments from two seep sites were analyzed. The large δ13C offset (-32‰) of SRB-derived fatty acids (FAs) between tubeworm and mussel carbonates were partially attributed to the distinct effects on isotope fraction by specific metabolic process of the macrofauna. In such processes, the isotope fraction of chemosynthetic symbionts and physical action of mussel activities could result in local 13C enrichment, whereas the sufficient sulfate released through the tubeworm roots resulting in a persistent production of methane-derived bicarbonate and the enrichment of lighter carbon at subsurface sediments. Compared to mussel carbonates, the significantly higher concentrations of DAGEs and FAs as well as the smaller δ13C offset (Δδ13CDAGEs-FAs) than that of the mussel carbonates, suggest that the DAGEs and at least part of FAs found in tubeworm carbonates biosynthesized by SRB species other than DSS cluster. This DAGE-producing SRB is most likely involved in the hydrogen-driven SR instead of methane-fueled SR because a variety of SRB other than members of DSS cluster on hydrogen was isolated in presence of ANME-1 assemblage. The substantial amounts of DAGEs with strong 13C-depletions in tubeworm ecosystem may provide an important clue for their sources and role in the AOM process.

Response of soft-bottom macrobenthic assemblages to artisanal trawling fisheries in a subtropical estuary

NASA Astrophysics Data System (ADS)

Ortega, Ileana; Colling, Leonir André; Dumont, Luiz Felipe Cestari

2018-07-01

Bottom trawling is one of the most harmful and widespread activities affecting benthic habitats and fauna. In this study, we analyzed the impact of shrimp trawling fisheries on the densities, assemblage structure and vertical stratification of the benthic macrofauna in shallow mudflats of the Patos Lagoon Estuary (Brazil). Experimental trawls of different intensities were performed during three shrimp fishing seasons (2015-2017), comparing macrofauna among before and after trawling, and a control zone. The changes in macrofaunal assemblages were more consistently related to natural variability than to trawling impact, being mostly influenced by sediment structure and salinity variation. The trawling impact was mainly detected in the area with higher percentages of fine sediments, with different macrofaunal responses in each month and stratum. Some non-significant decreases on total densities after trawling were observed, mainly on the superficial stratum, and signs of burial activities. The response to trawling disturbance of each species was different and it highly depended on their natural variability. Only five species showed significant variation to the trawling treatment (Erodona mactroides, Heleobia australis, H. charruana, Heteromastus similis and Laeonereis acuta), with temporally different responses. Decreasing densities were more related to the high impact treatment. In some seasons, decreases on the abundance of Monokalliapseudes schubarti after high impact trawls were up to 60% of the seasonal mean densities. Trawling fisheries may reduce macrobenthic densities but not their vertical stratification. The impact of trawling on key species may compromise the ecosystem function, as benthic macrofauna provide food sources for many aquatic resources. This study highlights trawling impacts in an estuarine nursery area, which should be fully considered since they may be reflected in the trophic webs.

Potential effects of climate change on the water level, flora and macro-fauna of a large neotropical wetland.

PubMed

Úbeda, Bárbara; Di Giacomo, Adrian S; Neiff, Juan José; Loiselle, Steven A; Poi, Alicia S Guadalupe; Gálvez, José Ángel; Casco, Silvina; Cózar, Andrés

2013-01-01

Possible consequences of climate change in one of the world's largest wetlands (Ibera, Argentina) were analysed using a multi-scale approach. Climate projections coupled to hydrological models were used to analyse variability in wetland water level throughout the current century. Two potential scenarios of greenhouse gas emissions were explored, both resulting in an increase in the inter-annual fluctuations of the water level. In the scenario with higher emissions, projections also showed a long-term negative trend in water-level. To explore the possible response of biota to such water-level changes, species-area relationships of flora and aerial censuses of macro-fauna were analysed during an extraordinary dry period. Plant species richness at the basin scale was found to be highly resistant to hydrological changes, as the large dimension of the wetland acts to buffer against the water-level variations. However, local diversity decreased significantly with low water levels, leading to the loss of ecosystem resilience to additional stressors. The analysis of macro-fauna populations suggested that wetland provides refuge, in low water periods, for the animals with high dispersal ability (aquatic and migratory birds). On the contrary, the abundance of animals with low dispersal ability (mainly herbivorous species) was negatively impacted in low water periods, probably because they are required to search for alternative resources beyond the wetland borders. This period of resource scarcity was also related to increased mortality of large mammals (e.g. marsh deer) around water bodies with high anthropogenic enrichment and cyanobacteria dominance. The synergy between recurrent climatic fluctuations and additional stressors (i.e. biological invasions, eutrophication) presents an important challenge to the conservation of neotropical wetlands in the coming decades.

Remote high-definition rotating video enables fast spatial survey of marine underwater macrofauna and habitats.

PubMed

Pelletier, Dominique; Leleu, Kévin; Mallet, Delphine; Mou-Tham, Gérard; Hervé, Gilles; Boureau, Matthieu; Guilpart, Nicolas

2012-01-01

Observing spatial and temporal variations of marine biodiversity from non-destructive techniques is central for understanding ecosystem resilience, and for monitoring and assessing conservation strategies, e.g. Marine Protected Areas. Observations are generally obtained through Underwater Visual Censuses (UVC) conducted by divers. The problems inherent to the presence of divers have been discussed in several papers. Video techniques are increasingly used for observing underwater macrofauna and habitat. Most video techniques that do not need the presence of a diver use baited remote systems. In this paper, we present an original video technique which relies on a remote unbaited rotating remote system including a high definition camera. The system is set on the sea floor to record images. These are then analysed at the office to quantify biotic and abiotic sea bottom cover, and to identify and count fish species and other species like marine turtles. The technique was extensively tested in a highly diversified coral reef ecosystem in the South Lagoon of New Caledonia, based on a protocol covering both protected and unprotected areas in major lagoon habitats. The technique enabled to detect and identify a large number of species, and in particular fished species, which were not disturbed by the system. Habitat could easily be investigated through the images. A large number of observations could be carried out per day at sea. This study showed the strong potential of this non obtrusive technique for observing both macrofauna and habitat. It offers a unique spatial coverage and can be implemented at sea at a reasonable cost by non-expert staff. As such, this technique is particularly interesting for investigating and monitoring coastal biodiversity in the light of current conservation challenges and increasing monitoring needs.

HABITAT VALUES FOR NEKTON AND BENTHIC MACROFAUNA IN PACIFIC NORTHWEST ESTUARIES

EPA Science Inventory

Habitat values for nekton in terms of mean number of species (S), abundance (A), and total biomass (B) were determined for 4 intertidal habitats in Yaquina Bay, OR: eelgrass (Zostera marina), mud shrimp (Upogebia pugettensis), ghost shrimp (Neotrypaea californiensis), and bare mu...

Dysaerobic trace fossils and ichnofabrics in the upper Jurassic Kimmeridge Clay of southern England

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wignall, P.B.

The trace fossil suite from the Kimmeridge Clay is calibrated against an oxygen gradient derived from previous geochemical, lithological and shelly macrofaunal studies. Several soft-bodied trace markers appear to have tolerated lower oxygen tensions than even the hardiest shelly benthic macrofauna-a common occurrence in both recent and ancient dysaerobic settings. Lowest diversity trace fossil assemblages consist of Astacimorphichnus etchesi (new ichnotaxon), a small endostratal pascichnial trace attributed to pioneering polychaete populations. Ekdale and Masons' (1988) contention that fodinichnia dominate the lowest diversity and lowest oxygen settings is not substantiated as the only example of this feeding strategy, Rhizocorallium irregulare, ismore » encountered in moderately diverse trace fossil assemblages associated with a low diversity shelly macrofauna. Upper dysaerobic conditions are characterized by the development of a surface mixed layer and the consequent destruction of fine lamination. Tiering is only developed under normal oxygen conditions with Chondrites as the deepest trace. In contrast to many previous studies, Chondrites is never found in dysaerobic facies.« less

Plant protein-based feeds and commercial feed enable isotopic tracking of aquaculture emissions into marine macrozoobenthic bioindicator species.

PubMed

Kusche, Henrik; Hillgruber, Nicola; Rößner, Yvonne; Focken, Ulfert

2017-06-01

Brittle stars (Ophiura spp.) and other benthic macrofauna were collected in a prospective mariculture area in the North Sea to determine if these taxa could be used as indicator species to track nutrients released from future offshore aquaculture sites. We analysed natural carbon and nitrogen stable isotopic signatures in tissues from macrofauna and compared these to six feed ingredients and four experimental diets made thereof, as well as to a commercial feed with and without lipid and carbonate removal. Our data suggest practicability of using isotopic signatures of Ophiura spp. to track aquaculture-derived organic material if plant-based fish diet ingredients and commercial feed were used for fish farming in the German Exclusive Economic Zone. Diets with high fish meal content would not be detected in Ophiura spp. using isotopic measures due to the similarity with the marine background. Our data provide valuable baseline information for studies on the impact of offshore aquaculture on the marine environment.

Current state of macrobenthic communities in Baydaratskaya Bay (Kara Sea)

NASA Astrophysics Data System (ADS)

Kokarev, V. N.; Kozlovsky, V. V.; Azovsky, A. I.

2015-09-01

Macrobenthic communities in Baydaratskaya Bay were studied before and after the seafloor pipeline was begun to be laid out in the year 2011. Materials were collected during three surveys in 2007, 2012, and 2013. Ordination of the data based on community structure and composition revealed a clear depthrelated zonality of the communities. Stations deeper than 10 meters were dominated by bivalves, while shallower stations were dominated by nephtyid polychaetes. This structure persisted though the whole period studied, without any pronounced temporal trends. However, several deep-water stations near the pipeline path in the year 2013 revealed a distinct shift in the structure of macrofauna, with large bivalves disappearing, an increased abundance of small polychaetes, and a decrease in total biodiversity. Moreover, macrofauna were absent at one of these stations. We conclude that the structure and distribution of communities are relatively stable and mainly driven by depth. However, there are some local but evident disturbance effects, probably caused by recent human activity (dumping of dredged sediments).

Integrated assessment of mangrove sediments in the Camamu Bay (Bahia, Brazil).

PubMed

Paixão, Joana F; de Oliveira, Olívia M C; Dominguez, José M L; Almeida, Edna dos Santos; Carvalho, Gilson Correia; Magalhães, Wagner F

2011-03-01

Camamu Bay, an Environmentally Protected Area, may be affected by the pressures of tourism and oil exploration in the adjacent continental platform. The current quality of the mangrove sediments was evaluated by porewater bioassays using embryos of Crassostrea rhizophorae and by an analysis of benthic macrofauna and its relationships with organic compounds, trace metals and bioavailability. Porewater toxicity varied from low to moderate in the majority of the samples, and polychaetes dominated the benthos. The Grande Island sampling station (Station 1) presented more sandy sediments, differentiated macrobenthic assemblages and the highest metal concentrations in relation to other stations and guideline values, and it was the only station that indicated a possible bioavailability of metals. The origin of the metals (mainly barium) is most likely associated with the barite ore deposits located in the Grande and Pequena islands. These results may be useful for future assessment of the impact of oil exploration in the coastal region. Copyright © 2010 Elsevier Inc. All rights reserved.

Mud, Macrofauna and Microbes: An ode to benthic organism-abiotic interactions at varying scales

EPA Science Inventory

Benthic environments are dynamic habitats, subject to variable sources and rates of sediment delivery, reworking from the abiotic and biotic processes, and complex biogeochemistry. These activities do not occur in a vacuum, and interact synergistically to influence food webs, bi...

Assessing differences in macrofaunal assemblages as a factor of sieve mesh size, distance between samples, and time of sampling.

PubMed

Hemery, Lenaïg G; Politano, Kristin K; Henkel, Sarah K

2017-08-01

With increasing cascading effects of climate change on the marine environment, as well as pollution and anthropogenic utilization of the seafloor, there is increasing interest in tracking changes to benthic communities. Macrofaunal surveys are traditionally conducted as part of pre-incident environmental assessment studies and post-incident monitoring studies when there is a potential impact to the seafloor. These surveys usually characterize the structure and/or spatiotemporal distribution of macrofaunal assemblages collected with sediment cores; however, many different sampling protocols have been used. An assessment of the comparability of past and current survey methods was in need to facilitate future surveys and comparisons. This was the aim of the present study, conducted off the Oregon coast in waters 25-35 m deep. Our results show that the use of a sieve with a 1.0-mm mesh size gives results for community structure comparable to results obtained from a 0.5-mm mesh size, which allows reliable comparisons of recent and past spatiotemporal surveys of macroinfauna. In addition to our primary objective of comparing methods, we also found interacting effects of seasons and depths of collection. Seasonal differences (summer and fall) were seen in infaunal assemblages in the wave-induced sediment motion zone but not deeper. Thus, studies where wave-induced sediment motion can structure the benthic communities, especially during the winter months, should consider this effect when making temporal comparisons. In addition, some macrofauna taxa-like polychaetes and amphipods show high interannual variabilities, so spatiotemporal studies should make sure to cover several years before drawing any conclusions.

Diversity, Abundance and Community Structure of Benthic Macro- and Megafauna on the Beaufort Shelf and Slope

PubMed Central

Nephin, Jessica; Juniper, S. Kim; Archambault, Philippe

2014-01-01

Diversity and community patterns of macro- and megafauna were compared on the Canadian Beaufort shelf and slope. Faunal sampling collected 247 taxa from 48 stations with box core and trawl gear over the summers of 2009–2011 between 50 and 1,000 m in depth. Of the 80 macrofaunal and 167 megafaunal taxa, 23% were uniques, present at only one station. Rare taxa were found to increase proportional to total taxa richness and differ between the shelf ( 100 m) where they tended to be sparse and the slope where they were relatively abundant. The macrofauna principally comprised polychaetes with nephtyid polychaetes dominant on the shelf and maldanid polychaetes (up to 92% in relative abundance/station) dominant on the slope. The megafauna principally comprised echinoderms with Ophiocten sp. (up to 90% in relative abundance/station) dominant on the shelf and Ophiopleura sp. dominant on the slope. Macro- and megafauna had divergent patterns of abundance, taxa richness ( diversity) and diversity. A greater degree of macrofaunal than megafaunal variation in abundance, richness and diversity was explained by confounding factors: location (east-west), sampling year and the timing of sampling with respect to sea-ice conditions. Change in megafaunal abundance, richness and diversity was greatest across the depth gradient, with total abundance and richness elevated on the shelf compared to the slope. We conclude that megafaunal slope taxa were differentiated from shelf taxa, as faunal replacement not nestedness appears to be the main driver of megafaunal diversity across the depth gradient. PMID:25007347

Diversity, abundance and community structure of benthic macro- and megafauna on the Beaufort shelf and slope.

PubMed

Nephin, Jessica; Juniper, S Kim; Archambault, Philippe

2014-01-01

Diversity and community patterns of macro- and megafauna were compared on the Canadian Beaufort shelf and slope. Faunal sampling collected 247 taxa from 48 stations with box core and trawl gear over the summers of 2009-2011 between 50 and 1,000 m in depth. Of the 80 macrofaunal and 167 megafaunal taxa, 23% were uniques, present at only one station. Rare taxa were found to increase proportional to total taxa richness and differ between the shelf (< 100 m) where they tended to be sparse and the slope where they were relatively abundant. The macrofauna principally comprised polychaetes with nephtyid polychaetes dominant on the shelf and maldanid polychaetes (up to 92% in relative abundance/station) dominant on the slope. The megafauna principally comprised echinoderms with Ophiocten sp. (up to 90% in relative abundance/station) dominant on the shelf and Ophiopleura sp. dominant on the slope. Macro- and megafauna had divergent patterns of abundance, taxa richness (α diversity) and β diversity. A greater degree of macrofaunal than megafaunal variation in abundance, richness and β diversity was explained by confounding factors: location (east-west), sampling year and the timing of sampling with respect to sea-ice conditions. Change in megafaunal abundance, richness and β diversity was greatest across the depth gradient, with total abundance and richness elevated on the shelf compared to the slope. We conclude that megafaunal slope taxa were differentiated from shelf taxa, as faunal replacement not nestedness appears to be the main driver of megafaunal β diversity across the depth gradient.

Antifouling leaching technique for optical lenses

USGS Publications Warehouse

Strahle, William J.; Perez, C. L.; Martini, Marinna A.

1994-01-01

The effectiveness of optical lenses deployed in water less than 100 m deep is significantly reduced by biofouling caused by the settlement of macrofauna, such as barnacles, hydroids, and tunicates. However, machineable porous plastic rings can be used to dispense antifoulant into the water in front of the lens to retard macrofaunal growth without obstructing the light path. Unlike coatings which can degrade the optical performance, antifouling rings do not interfere with the instrument optics. The authors have designed plastic, reusable cup-like antifouling rings to slip over the optical lenses of a transmissometer. These rings have been used for several deployments on shallow moorings in Massachusetts Bay, MA and have increased the time before fouling degrades optical characteristics

Soil Fungi and Macrofauna in the Neotropics

Treesearch

Yiqing Li; Grizelle Gonzalez

2008-01-01

Decomposition is a critical ecosystem function that decomposes dead organic materials, removes wastes, recycles nutrients and renews soils fertility. In natural ecosystems most nitrogen (N) and phosphorus (P) required for plant growth are supplied through the decomposition of detritus, relying therefore on the activities of soil microbes and microfauna. Decomposition...

Methodological Considerations in the Study of Earthworms in Forest Ecosystems

Treesearch

Dylan Rhea-Fournier; Grizelle Gonzalez

2017-01-01

Decades of studies have shown that soil macrofauna, especially earthworms, play dominant engineering roles in soils, affecting physical, chemical, and biological components of ecosystems. Quantifying these effects would allow crucial improvement in biogeochemical budgets and modeling, predicting response of land use and disturbance, and could be applied to...

EFFECTS OF DDT SEDIMENT-CONTAMINATION ON MACROFAUNAL COMMUNITY STRUCTURE AND COMPOSITION IN SAN FRANCISCO BAY

EPA Science Inventory

The objectives of this study were to determine the effects of sediment contamination on the benthic macrofauna and to predict macrofaunal changes following remediation at a Superfund (uncontrolled hazardous waste) site in San Francisco Bay, CA, USA. DDT and its metabolites (sumDD...

Ecological periodic tables for bentkhic macrofauna and nekton usage in estuarine habitats

EPA Science Inventory

In his presidential address to the British Ecological Society, T.R.E. Southwood (1977: Habitat, the templet for ecological strategies? Journal of Animal Ecology 46: 337-365; http://www.jstor.org/stable/3817) compared the situation in ecology to that in chemistry before the devel...

A cross-taxa study using environmental DNA/RNA metabarcoding to measure biological impacts of offshore oil and gas drilling and production operations.

PubMed

Laroche, Olivier; Wood, Susanna A; Tremblay, Louis A; Ellis, Joanne I; Lear, Gavin; Pochon, Xavier

2018-02-01

Standardized ecosystem-based monitoring surveys are critical for providing information on marine ecosystem health. Environmental DNA/RNA (eDNA/eRNA) metabarcoding may facilitate such surveys by quickly and effectively characterizing multi-trophic levels. In this study, we assessed the suitability of eDNA/eRNA metabarcoding to evaluate changes in benthic assemblages of bacteria, Foraminifera and other eukaryotes along transects at three offshore oil and gas (O&G) drilling and production sites, and compared these to morphologically characterized macro-faunal assemblages. Bacterial communities were the most responsive to O&G activities, followed by Foraminifera, and macro-fauna (the latter assessed by morphology). The molecular approach enabled detection of hydrocarbon degrading taxa such as the bacteria Alcanivorax and Microbulbifer at petroleum impacted stations. Most identified indicator taxa, notably among macro-fauna, were highly specific to site conditions. Based on our results we suggest that eDNA/eRNA metabarcoding can be used as a stand-alone method for biodiversity assessment or as a complement to morphology-based monitoring approaches. Copyright © 2017 Elsevier Ltd. All rights reserved.

The influence of cyanobacteria on oil polluted intertidal soils at the Saudi Arabian Gulf shores.

PubMed

Barth, Hans Jörg

2003-10-01

In 1991 the second Gulf War lead to the largest oil spill in human history. Over 770 km of coastline from southern Kuwait to Abu Ali Island (Saudi Arabia) were smothered with oil and tar, erasing most of the local plant and animal communities. In the following year cyanobacteria colonized most of the oil polluted shores. In the study area at the Saudi Arabian Gulf coast north of Jubail three different processes were observed that followed the extensive formation of cyanobacterial mats. The first one is desiccation, cracking, and peeling of the cyanobacterial mats, thereby removing the uppermost part of the oiled sediment. The second is the resettlement of burrowing macrofauna like crabs and benthic animals such as gastropods, which outcompete the cyanobacteria again. The third process is further extensive growth of cyanobacteria building thick laminated mats. These layers, completely seal the surface and hence produce an anaerobic milieu which inhibits oil degradation. As long as such cyanobacteria exist, they will prevent microbial oil degradation as well as any resettlement by macrofauna.

Importance of dung incorporation activity by three species of coprophagous beetle (Coleoptera: Scarabaeidae: Scarabaeinae) macrofauna in pastureland on "La Michilía" biosphere reserve in Durango, Mexico.

PubMed

Anduaga, Sofía; Huerta, Carmen

2007-06-01

The dung incorporation activity of three species of coprophagous beetle macrofauna (Coleoptera: Scarabaeidae: Scarabaeinae), Dichotomius colonicus (Say), Phanaeus quadridens (Say), and Copris klugi sierrensis Matthews, was studied on a hectare of pastureland on "La Michilía" Biosphere Reserve. In total, 223 specimens of the three species were recorded. On the basis of abundance, the dominant species was D. colonicus. A substantial percentage (31% in September and 51% in October) of dung pats remained on the surface, untouched by beetles. Most of the specimens observed (92%) were found amassing dung in galleries. The dung accumulation capacity of D. colonicus varied from 5 to 135 g of dung (dry weight)/pair, whereas C. klugi sierrensis amassed an average of 24.3 +/- 8.5 g/pair and P. quadridens amassed an average of 12 +/- 2.5 g/pair. Based on dung burying efficiency, D. colonicus was considered the most beneficial of the three species in the study area. It dug deeper, wider galleries and incorporated the largest amount of dung into the soil.

First evidence of “ancient deer” (cervid) in the late Miocene Bira Formation, Northern Israel

PubMed Central

Shaked Gelband, Dotan; Stein, Mordechai; Mienis, Henk K.; Rabinovich, Rivka

2017-01-01

Despite the extensive geological and paleontological searches in the south Levant, no terrestrial fauna of late Neogene age was yet reported. Here, we report the first evidence of “ancient deer”–cervid in the late Miocene (Tortonian) lacustrine section of the Bira Formation at Hagal Stream, Jordan Valley, northern Israel. The section comprises rich assemblage of macrofauna fossils, mostly freshwater mollusks. The mammalian bone was discovered among the macrofauna fossils, and is described as an almost complete left humerus of an adult animal identified as an artiodactyls element probably of a cervid. This terrestrial mammal shares similar paleoenvironmental conditions with other contemporaneous localities, where cervids prevailed with bovids and other taxa. It appears that the freshwater lakes provided favorite habitat for the development of the cervids and possibly other mammals. The specific conditions of preservation of the cervid illuminate the role of post depositional processes (taphonomic constrains) in masking terrestrial fauna remains in the region. Accordingly, further efforts will be devoted to unveil the mute part of the southern Levant–east Mediterranean terrestrial faunistic realm at the end of the Miocene. PMID:29091714

Cumberlandian Mollusk Conservation Program. Activity 8: analysis of macrofauna factors. [Conradilla caelata; quadrula intermedia

DOE Office of Scientific and Technical Information (OSTI.GOV)

Barr, W.C.; Ahlstedt, S.A.; Hickman, G.D.

1986-02-01

This study provides information that may be critical to the continued survival of the mussels Conradilla caelata and Qadrula intermedia in several rivers throughout the region. The biotic components of several river reaches that have populations of these endangered species were examined to determine what biotic attributes were different from those study reaches that did not have these mussels. In all cases the quantity and quality of the benthos would be considered adequate to sustain those consumers, in this case fish, that are necessary to assure continuation of the mussel community. If fish other than Etheostoma zonale (banded darter) aremore » determined to be acceptable hosts for either Conradilla caelata or Qadrula intermedia then there will probably be adequate numbers at each potential transplant site to accomplish reproduction. During this study we have determined that the benthic macrofauna at all sites is adequate, and supports a fish assemblage of considerable diversity and abundance, hence it is probable that adequate fish hosts are available to accommodate a complex mussel fauna.« less

Characterization and consequences of intermittent sediment oxygenation by macrofauna: interpretation of high-resolution data sets

NASA Astrophysics Data System (ADS)

Meile, C. D.; Dwyer, I.; Zhu, Q.; Polerecky, L.; Volkenborn, N.

2017-12-01

Mineralization of organic matter in marine sediments leads to the depletion of oxygen, while activities of infauna introduce oxygenated seawater to the subsurface. In permeable sediments solutes can be transported from animals and their burrows into the surrounding sediment through advection over several centimeters. The intermittency of pumping leads to a spatially heterogeneous distribution of oxidants, with the temporal dynamics depending on sediment reactivity and activity patterns of the macrofauna. Here, we present results from a series of experiments in which these dynamics are studied at high spatial and temporal resolution using planar optodes. From O2, pH and pCO2 optode data, we quantify rates of O2 consumption and dissolved inorganic carbon production, as well alkalinity dynamics, with millimeter-scale resolution. Simulating intermittent irrigation by imposed pumping patterns in thin aquaria, we derive porewater flow patterns, which together with the production and consumption rates cause the chemical distributions and the establishment of reaction fronts. Our analysis thus establishes a quantitative connection between the locally dynamic redox conditions relevant for biogeochemical transformations and macroscopic observations commonly made with sediment cores.

Effects of dredging operations on soft bottom macrofauna in a harbor in the Patos Lagoon estuarine region of southern Brazil.

PubMed

Bemvenuti, C E; Angonesi, L G; Gandra, M S

2005-11-01

An evaluation was made of the effects of dredging on the soft bottom community in the channel of the Rio Grande harbor in the Patos Lagoon estuarine region of southern Brazil. During four seasonal cruises, samples were collected from nine biological stations, one of which was located outside the dredged area. Three macrobenthic samples were collected on each cruise from each station, using a 0.08 m2 van Veen grab. A cluster analysis was applied to group summer and autumn cruise stations before the dredging period, revealing larger numbers of species (35-36 spp.) and higher densities of organisms. The station located outside the dredging area was always included in this group, regardless of the sampling period or conditions of salinity. Another group comprised the winter and spring stations during the dredging period. This group was characterized by stations with the fewest species (20-18 spp.) and the lowest and most variable organism densities. The efficient strategies of resilience of the dominant estuarine species may minimize the effects of dredging on the biota through the rapid recolonization of the soft bottom of the harbor channel.

Quantitative assessment of benthic food resources for juvenile Gulf sturgeon, Acipenser oxyrinchus desotoi in the Suwannee River estuary, Florida, USA

USGS Publications Warehouse

Brooks, R.A.; Sulak, K.J.

2005-01-01

Gulf sturgeon, Acipenser oxyrinchus desotoi, forage extensively in the Suwannee River estuary following emigration out of the Suwannee River, Florida. While in the estuary, juvenile Gulf sturgeon primarily feed on benthic infauna. In June-July 2002 and February-April 2003, random sites within the estuary were sampled for benthic macrofauna (2002 n = 156; 2003 n = 103). A mean abundance of 2,562 ind m-2 (SE ?? 204) was found in the summer, with significantly reduced macrofaunal abundance in the winter (mean density of 1,044 ind m-2, SE ?? 117). Benthic biomass was significantly higher in the summer with an average summer sample dry weight of 5.92 g m-2 (SE ?? 0.82) compared to 3.91 g m-2 (SE ?? 0.67) in the winter. Amphipods and polychaetes were the dominant taxa collected during both sampling periods. Three different estimates of food availability were examined taking into account principal food item information and biomass estimates. All three estimates provided a slightly different view of potential resources but were consistent in indicating that food resource values for juvenile Gulf sturgeon are spatially heterogeneous within the Suwannee River estuary. ?? 2005 Estuarine Research Federation.

The Role of Soil Biological Function in Regulating Agroecosystem Services and Sustainability in the Quesungual Agroforestry System

NASA Astrophysics Data System (ADS)

Fonte, S.; Pauli, N.; Rousseau, L.; SIX, J. W. U. A.; Barrios, E.

2014-12-01

The Quesungual agroforestry system from western Honduras has been increasingly promoted as a promising alternative to traditional slash-and-burn agriculture in tropical dry forest regions of the Americas. Improved residue management and the lack of burning in this system can greatly impact soil biological functioning and a number of key soil-based ecosystem services, yet our understanding of these processes has not been thoroughly integrated to understand system functionality as a whole that can guide improved management. To address this gap, we present a synthesis of various field studies conducted in Central America aimed at: 1) quantifying the influence of the Quesungual agroforestry practices on soil macrofauna abundance and diversity, and 2) understanding how these organisms influence key soil-based ecosystem services that ultimately drive the success of this system. A first set of studies examined the impact of agroecosystem management on soil macrofauna populations, soil fertility and key soil processes. Results suggest that residue inputs (derived from tree biomass pruning), a lack of burning, and high tree densities, lead to conditions that support abundant, diverse soil macrofauna communities under agroforestry, with soil organic carbon content comparable to adjacent forest. Additionally, there is great potential in working with farmers to develop refined soil quality indicators for improved land management. A second line of research explored interactions between residue management and earthworms in the regulation of soil-based ecosystem services. Earthworms are the most prominent ecosystem engineers in these soils. We found that earthworms are key drivers of soil structure maintenance and the stabilization of soil organic matter within soil aggregates, and also had notable impacts on soil nutrient dynamics. However, the impact of earthworms appears to depend on residue management practices, thus indicating the need for an integrated approach for management of soil biological function and ecosystem services in the Quesungual agroforestry system.

Methane seepage effects on biodiversity and biological traits of macrofauna inhabiting authigenic carbonates

NASA Astrophysics Data System (ADS)

Levin, Lisa A.; Mendoza, Guillermo F.; Grupe, Benjamin M.

2017-03-01

Authigenic carbonate rocks at methane seeps are recognized as hosting diverse and abundant invertebrate assemblages, with potential forcing from fluid seepage and hydrography. Mensurative studies of carbonate macrofauna (>0.3 mm) at Hydrate Ridge, OR revealed little effect of water depth and overlying oxygenation (at 600 m and 800 m) but a large influence of seepage activity on density, taxonomic composition, diversity, and biological traits (feeding, lifestyle, motility, size and calcification). Rocks exposed to active seepage had 3-4× higher total macrofaunal densities than under inactive conditions. Assemblages exhibited higher species richness and reduced evenness (greater dominance) under active seepage than inactive conditions, but no difference in H‧ or rarefaction diversity. Actively seeping sites were characterized by errant (motile), bacterial grazing, small- and medium-sized, heavily calcified species, whereas inactive sites exhibited a greater diversity of feeding modes and more burrowers, sessile, large and lightly calcified species. Active rocks supported more exogonid (Syllidae), ampharetid, and cirratulid polychaetes, provannid snails, pyropeltid limpets, nemerteans, and sponges; whereas inactive rocks supported higher densities of ophiuroids, isopods, gammarid amphipods, hydroids, Typosyllis (Syllidae) and tanaids. Transplant experiments, in which rocks were transferred between active and inactive sites at Hydrate Ridge North (600 m), revealed that assemblages respond within 13 months to increase or cessation of seepage, taking on the feeding, size and calcification characteristics of the background fauna at the new site. Lifestyles and motility patterns shifted more slowly as the sessile, attached species did not track seepage as quickly. Provannid snails and pyropeltid limpets rapidly colonized rocks transplanted to active sites and disappeared when transplanted to inactive sites. Given the known variability of fluid fluxes and rapid community response, a mosaic of communities changing in space and time is hypothesized to generate the relatively high species diversity at methane seeps.

Trophic relationships at intrannual spatial and temporal scales of macro and megafauna around a submarine canyon off the Catalonian coast (western Mediterranean)

NASA Astrophysics Data System (ADS)

Cartes, Joan E.; Fanelli, Emanuela; Papiol, Vanesa; Maynou, Francesc

2010-04-01

The spatial and temporal changes of near-bottom macrofauna (suprabenthos and macroplankton) and the trophic relationships of megabenthic decapod crustaceans were analyzed off the Catalonian coasts (western Mediterranean) around Berenguera submarine canyon in four periods (April and December 1991, March and July 1992) and four zones (within Berenguera Canyon at ca. 450 m, and on adjacent slope at ca. 400, 600 m and 1200 m). In March 1992, we found the highest macrofauna abundance and the smallest sizes in the canyon, suggesting a positive effect of river discharges on suprabenthos recruitment. By contrast, macroplankton (decapods, fishes and euphausiids) did not show higher recruitment into canyons. After analyzing the diet of 23 decapod crustaceans, we found a significant segregation between guilds feeding on zooplankton and on benthos. Zooplankton (euphausiids and Pasiphaeidae) and infauna (polychaetes, Calocaris macandreae and ophiuoroids) were consistently the main prey exploited by decapod crustaceans around Berenguera Canyon. We also found some macrophyte ( Posidonia oceanica) consumption, which was higher in periods of water column homogeneity (winter-spring and late autumn). Positive correlations between decapods' gut fullness ( F) and decapod abundance indicate feeding aggregations, while positive correlations were also found between F and Llobregat River (situated ca. 18 km from Berenguera head) flow 1 to 2 months before sampling. Increases in F were delayed only 1 month when zooplankton feeders were analyzed alone, while benthos feeders did not show significant relationships with any environmental variables. That indicates that the response of megabenthic decapods feeding on benthos to environmental shifts is slower than that of zooplankton feeders. The importance of river flows in enhancing food supply of macro- and megabenthos dwelling close to submarine canyons was apparent, with a delay in the fauna response of 0-2 months after river flow peaks.

Mapping marine habitat suitability and uncertainty of Bayesian networks: a case study using Pacific benthic macrofauna

Treesearch

Andrea Havron; Chris Goldfinger; Sarah Henkel; Bruce G. Marcot; Chris Romsos; Lisa Gilbane

2017-01-01

Resource managers increasingly use habitat suitability map products to inform risk management and policy decisions. Modeling habitat suitability of data-poor species over large areas requires careful attention to assumptions and limitations. Resulting habitat suitability maps can harbor uncertainties from data collection and modeling processes; yet these limitations...

Primary succession seen through the shifted patterns of plant traits and soil macrofauna above/under-ground activity, a different ecological perspective towards post mining sites

NASA Astrophysics Data System (ADS)

Moradi, Jabbar; Mudrak, Ondrej; Frouz, Jan

2016-04-01

Using of trait distribution is becoming a promising field of ecology. Community weighted mean (CWM) values, in this regard, can summarize the shifts in the mean trait values within communities via environmental selection for a specific functional trait. Although traits have been widely used to describe relationships between plants and environmental variables, they are less used in study of interactions with other trophical levels. In 2013, we conducted a study to see the effect of plant community traits on soil and soil macrofauna epigeic/endogeic activity. We used sites of 10, 18, 28 and 55 years old in a succession sequence located at Sokolov post-mining site, Czech Republic. In each site we studied bare, grassy and woody patches. Vegetation traits, namely plant forms (i.e. grass, forb, legume, shrub and tree), canopy height, LDMC (leaf dry matter content), seed mass, and presence/absence of taproot during the whole life cycle were identified in 1-m×1-m quadrates. Soil fauna samples were collected from the same patches. Four patches were sampled in each plot and patch type. Fauna were extracted with a Tullgren apparatus, identified to family and counted. Their numbers were expressed per m2. CWM values of plan traits and faunal surface activity were calculated using the FD package in R. The computed values were transferred afterwards to CANOCO for further analyses. The effect of patches and age on dependent variables was determined with two-way ANOVAs. The higher LDMC in grassy and woody patches, particularly its correlation with 28 yrs site, can be related to higher reported P levels in 28 yrs site in specific, and generally higher nutrient return and C accumulation in vegetated sites. The absence of taproot in vegetated patches and 28 yrs site can be because of more competition with other species. It seems that the correlation between seed mass with oldest site and legume form is, roughly, a result of the change in community composition from forbs and grasses to "late succession species" of the oldest ages such as legumes.We infer that by time passing, thru soil development in older sites, soil medium became more favorable for larval stages and endogeic lifestyle of fauna, in other words, environmental selection and consequently the successful colonization of fauna holding the similar trait (i.e. epigeic activity) ended up in an endogeic community shift towards developed soils under older sites. The shift in CWM value of fauna community clearly shows importance of soil development for a stable colonization and regeneration of migrated communities. Traits related to life history of fauna, e.g. epigeic and endogeic, as well as correlated plant traits instead of plant species communities, i.e. LDMC and plant forms, can be of great value for an enhanced perception of the community pattern dynamics through time and space. The incorporation of trait diversity in primary and secondary successional studies seems to be promising in order to gain a better understanding of the successional changes.

Effect of sample area and sieve size on benthic macrofaunal community condition assessments in California enclosed bays and estuaries.

PubMed

Hammerstrom, Kamille K; Ranasinghe, J Ananda; Weisberg, Stephen B; Oliver, John S; Fairey, W Russell; Slattery, Peter N; Oakden, James M

2012-10-01

Benthic macrofauna are used extensively for environmental assessment, but the area sampled and sieve sizes used to capture animals often differ among studies. Here, we sampled 80 sites using 3 different sized sampling areas (0.1, 0.05, 0.0071 m(2)) and sieved those sediments through each of 2 screen sizes (0.5, 1 mm) to evaluate their effect on number of individuals, number of species, dominance, nonmetric multidimensional scaling (MDS) ordination, and benthic community condition indices that are used to assess sediment quality in California. Sample area had little effect on abundance but substantially affected numbers of species, which are not easily scaled to a standard area. Sieve size had a substantial effect on both measures, with the 1-mm screen capturing only 74% of the species and 68% of the individuals collected in the 0.5-mm screen. These differences, though, had little effect on the ability to differentiate samples along gradients in ordination space. Benthic indices generally ranked sample condition in the same order regardless of gear, although the absolute scoring of condition was affected by gear type. The largest differences in condition assessment were observed for the 0.0071-m(2) gear. Benthic indices based on numbers of species were more affected than those based on relative abundance, primarily because we were unable to scale species number to a common area as we did for abundance. Copyright © 2010 SETAC.

Particle mixing processes of Chernobyl fallout in deep Norwegian Sea sediments: Evidence for seasonal effects

NASA Astrophysics Data System (ADS)

Balzer, W.

1996-09-01

A 1430 m deep station in the Norwegian Sea (Voering Plateau) was occupied five times between May 1986 and February 1987 to investigate the seasonal variation in sediment mixing rates. Cherbnbyl-derived radiocesium, identified by its high proportion of short-lived 134Cs, was used as a tracer for mixing. Most of the nuclide input arrived at the sediment within a narrow time span in June/early July during the beginning of the seasonal biogenic sedimentation pulse. Measured 137Cs profiles in the sediment over time were compared with modelled distributions calculated with a finite difference scheme. The input function of radiocesium to the sea floor was evaluated from the increase of the total inventory with time. Time-invariant mixing coefficients did not provide reasonable fits to either summer or winter distributions. The best fit was obtained with a rate of mixing proportional to the radiocesium input flux, with an average enhancement factor of 6.6 during the two summer months. It appears that the benthic macrofauna are more active during the food supply season and rapidly ingest/bury freshly sedimented materials.

Soil macrofauna and litter nutrients in three tropical tree plantations on a disturbed site in Puerto Rico.

Treesearch

Matthew W. Warren; Xiaoming Zou

2002-01-01

Tree plantations are increasingly common in tropical landscapes due to their multiple uses. Plantations vary in structure and composition, and these variations may alter soil fauna communities. Recent studies have demonstrated the important role of soil fauna in the regulation of plant litter decomposition in the tropics. However, little is known about how plantation...

Protection of biomass from snail overgrazing in a trickling filter using sponge media as a biomass carrier: down-flow hanging sponge system.

PubMed

Onodera, Takashi; Syutsubo, Kazuaki; Yoochatchaval, Wilasinee; Sumino, Haruhiko; Mizuochi, Motoyuki; Harada, Hideki

2015-01-01

This study investigated down-flow hanging sponge (DHS) technology as a promising trickling filter (TF) using sponge media as a biomass carrier with an emphasis on protection of the biomass against macrofauna overgrazing. A pilot-scale DHS reactor fed with low-strength municipal sewage was operated under ambient temperature conditions for 1 year at a sewage treatment plant in Bangkok, Thailand. The results showed that snails (macrofauna) were present on the surface of the sponge media, but could not enter into it, because the sponge media with smaller pores physically protected the biomass from the snails. As a result, the sponge media maintained a dense biomass, with an average value of 22.3 gVSS/L sponge (58.1 gTSS/L sponge) on day 370. The snails could graze biomass on the surface of the sponge media. The DHS reactor process performance was also successful. The DHS reactor requires neither chemical treatments nor specific operations such as flooding for snail control. Overall, the results of this study indicate that the DHS reactor is able to protect biomass from snail overgrazing.

Impacts of aggregate dredging on sediment composition and associated benthic fauna at an offshore dredge site in the southern North Sea.

PubMed

Robinson, J E; Newell, R C; Seiderer, L J; Simpson, N M

2005-07-01

Dredging and associated screening at a dredge site in the southern North Sea (Area 408) is associated with areas of well-sorted fine sand that extend for up to 3 km to the south-east of the dredged area and overlay sediments with a more variable particle size composition. This well-sorted fine sand may reflect deposition and transport of material mobilised by the dredging and screening processes at the dredge site. Multivariate analysis of the benthic community structure suggests that marine aggregate dredging, at the level of intensity employed in the study area prior to sample collection, has had a limited impact on benthic community composition compared with that reported from studies elsewhere. This is ascribed to the likely rapid rates of recolonisation by the mobile opportunistic polychaetes and crustaceans that dominate the macrofauna of the sandy gravel deposits at this particular dredge site. Analysis of variance showed, however, that significant differences existed between the sample treatments in terms of species evenness (Pielou's J). Dredged samples were found to have the lowest mean species evenness (0.71) when compared to controls (0.77). The present study highlights the inherent difficulties in the application of general impact/recovery predictions to dredged sites with varying environmental characteristics.

Submarine groundwater discharges create unique benthic communities in a coastal sandy marine environment

NASA Astrophysics Data System (ADS)

Leitão, Francisco; Encarnação, João; Range, Pedro; Schmelz, Rüdiger M.; Teodósio, Maria A.; Chícharo, Luís

2015-09-01

In this study we assessed the small-scale effects of submarine groundwater discharges (SGD) on macrofaunal assemblages associated with shallow sandy sediments along the south coast of Portugal. Corer samples were collected in a (1) subtidal seep, (2) at the edge of the seep (periphery) and (3) in the surrounding area. Community structure varied across areas, with diversity, species richness and evenness generally low at seep relatively to the surrounding area. Community composition within the seep was reduced to a small number of taxa, although total abundance was similar between seeps and surrounding areas. The seep was characterized by a distinct hydrological environment, with lower salinity and pH, relative to the surroundings sandy areas. More than 93% of the benthic macrofauna in the seep was dominated by Lumbricillus lineatus (enchytraeid oligochaetes). This study is the first to record the presence of this euryaline species in Portuguese marine waters. In the surrounding area Spionidae Polychaetes and Bathyporeia sp. (Amphipoda) were the most frequent and abundant taxa. These findings provide evidence for a direct association between SGD effect and the composition of benthic marine assemblages. The patchy habitat created by groundwater seep allowed euryhaline species with short and fast recruitment times to occur in a fully marine environment. Whether this pattern is consistent, or only occurs when smooth favorable sea conditions are not superimposed on the groundwater effect remains uncertain.

Differences in the structure and functioning of two communities: Frondose and turf-forming macroalgal dominated habitats.

PubMed

M Martins, Gustavo; Hipólito, Cláudia; Parreira, Filipe; C L Prestes, Afonso; Dionísio, Maria A; N Azevedo, José M; Neto, Ana I

2016-05-01

In many coastal regions, vegetated habitats (e.g. kelps forests, seagrass beds) play a key role in the structure and functioning of shallow subtidal reef ecosystems, by modifying local environmental conditions and by providing food and habitat for a wide range of organisms. In some regions of the world, however, such idiosyncratic ecosystems are largely absent and are often replaced by less notable ecosystem formers. In the present study, we empirically compared the structure and functioning of two distinct shallow-water habitats present in the Azores: one dominated by smaller frondose brown macroalgae (Dictyotaceae and Halopteris) and one dominated by low-lying turfs. Two replicated areas of each habitat were sampled at two different times of the year, to assess spatial and temporal consistency of results. Habitats dominated by small fronds were significantly (ca. 3 times) more productive (when standardized per algal mass) compared to the turf-dominated habitats, and supported a distinct assemblage (both in terms of composition and abundance) of associated macrofauna. Unlike other well-known and studied vegetated habitats (i.e. kelp forests), however, no effects of habitat were found on the structure of benthonic fish assemblages. Results were spatially and temporally consistent suggesting that, in warmer temperate oceans, habitats dominated by species of smaller frondose brown algae can also play an important role in the structure and functioning of subtidal communities and may, to a certain extent, be considered analogous to other well-known vegetated habitats around the world (i.e. kelp forests, seagrass beds). Copyright © 2016 Elsevier Ltd. All rights reserved.

Biological decomposition efficiency in different woodland soils.

PubMed

Herlitzius, H

1983-03-01

The decomposition (meaning disappearance) of different leaf types and artificial leaves made from cellulose hydrate foil was studied in three forests - an alluvial forest (Ulmetum), a beech forest on limestone soil (Melico-Fagetum), and a spruce forest in soil overlying limestone bedrock.Fine, medium, and coarse mesh litter bags of special design were used to investigate the roles of abiotic factors, microorganisms, and meso- and macrofauna in effecting decomposition in the three habitats. Additionally, the experimental design was carefully arranged so as to provide information about the effects on decomposition processes of the duration of exposure and the date or moment of exposure. 1. Exposure of litter samples oor 12 months showed: a) Litter enclosed in fine mesh bags decomposed to some 40-44% of the initial amount placed in each of the three forests. Most of this decomposition can be attributed to abiotic factors and microoganisms. b) Litter placed in medium mesh litter bags reduced by ca. 60% in alluvial forest, ca. 50% in beech forest and ca. 44% in spruce forest. c) Litter enclosed in coarse mesh litter bags was reduced by 71% of the initial weights exposed in alluvial and beech forests; in the spruce forest decomposition was no greater than observed with fine and medium mesh litter bags. Clearly, in spruce forest the macrofauna has little or no part to play in effecting decomposition. 2. Sequential month by month exposure of hazel leaves and cellulose hydrate foil in coarse mesh litter bags in all three forests showed that one month of exposure led to only slight material losses, they did occur smallest between March and May, and largest between June and October/November. 3. Coarse mesh litter bags containing either hazel or artificial leaves of cellulose hydrate foil were exposed to natural decomposition processes in December 1977 and subsampled monthly over a period of one year, this series constituted the From-sequence of experiments. Each of the From-sequence samples removed was immediately replaced by a fresh litter bag which was left in place until December 1978, this series constituted the To-sequence of experiments. The results arising from the designated From- and To-sequences showed: a) During the course of one year hazel leaves decomposed completely in alluvial forest, almost completely in beech forest but to only 50% of the initial value in spruce forest. b) Duration of exposure and not the date of exposure is the major controlling influence on decomposition in alluvial forest, a characteristic reflected in the mirror-image courses of the From- and To-sequences curves with respect to the abscissa or time axis. Conversely the date of exposure and not the duration of exposure is the major controlling influence on decomposition in the spruce forest, a characteristic reflected in the mirror-image courses of the From-and To-sequences with respect to the ordinate or axis of percentage decomposition. c) Leaf powder amendment increased the decomposition rate of the hazel and cellulose hydrate leaves in the spruce forest but had no significant effect on their decomposition rate in alluvial and beech forests. It is concluded from this, and other evidence, that litter amendment by leaf fragments of phytophage frass in sites of low biological decomposition activity (eg. spruce) enhances decomposition processes. d) The time course of hazel leaf decomposition in both alluvial and beech forest is sigmoidal. Three s-phases are distinguished and correspond to the activity of microflora/microfauna, mesofauna/macrofauna, and then microflora/microfauna again. In general, the sigmoidal pattern of the curve can be considered valid for all decomposition processes occurring in terrestrial situations. It is contended that no decomposition (=disappearance) curve actually follows an e-type exponential function. A logarithmic linear regression can be constructed from the sigmoid curve data and although this facilitates inter-system comparisons it does not clearly express the dynamics of decomposition. 4. The course of the curve constructed from information about the standard deviations of means derived from the From- and To-sequence data does reflect the dynamics of litter decomposition. The three s-phases can be recognised and by comparing the actual From-sequence deviation curve with a mirror inversion representation of the To-sequence curve it is possible to determine whether decomposition is primarily controlled by the duration of exposure or the date of exposure. As is the case for hazel leaf decomposition in beech forest intermediate conditions can be readily recognised.

Stratigraphy and macrofauna of the Lower Jurassic (Toarcian) Marrat Formation, central Saudi Arabia

NASA Astrophysics Data System (ADS)

El-Sorogy, Abdelbaset S.; Gameil, Mohamed; Youssef, Mohamed; Al-Kahtany, Khaled M.

2017-10-01

The stratigraphy and macrofaunal content of the Lower Jurassic (Toarcian) Marrat Formation was studied at Khashm adh Dhibi, central Saudi Arabia. The studied succession is dominated by limestones and dolomites, with subordinate occurrences of sandstones, siltstones and claystones. The formation is highly fossiliferous with brachiopods, gastropods, bivalves, ammonites and echinoids, particularly the lower and upper members. Twenty nine species are identified, they include 7 species of brachiopods, 8 gastropods, 8 bivalves, 4 ammonites and 2 echinoids. Many of the identified fauna are correlated with Jurassic equivalents in Jordan, Italy, Morocco, Egypt and India. Three gastropod species: Globularia subumbilicata, Ampullospira sp., Purpuroidea peristriata and seven bivalve species: Palaeonucula lateralis, Chlamys (Radulopecten) fibrosa, Eligmus weiri, E.integer, E. asiaticus, Musculus somaliensis and Pholadomya orientalis were recognized for the first time in the Lower Jurassic deposits of Saudi Arabia.

In-Situ Electrokinetic Remediation for Metal Contaminated Soils

DTIC Science & Technology

2001-03-01

Press. Riddle, M. J. 1988. Patterns in the distribution of macrofauna! communities in coral reef sediments on the central Great Barrier Reef . Mar...acidified. This acidification results in solubilization of contaminants due to desorption and dissolution of species from soil. Once contaminants are...the north and east, the Pacific Ocean on the south and west, and a Ventura County Game Reserve on the west and northwest (Figure 6). The Navy has

Dietary composition of black drum Pogonias cromis in a hypersaline estuary reflects water quality and prey availability.

PubMed

Rubio, K S; Ajemian, M; Stunz, G W; Palmer, T A; Lebreton, B; Beseres Pollack, J

2018-06-22

The Baffin Bay estuary is a hypersaline system in the Gulf of Mexico that supports an important recreational and commercial fishery for black drum Pogonias cromis, a benthic predator. Seasonal measurements of water quality variables, benthic macrofauna densities and biomass, and determination of P. cromis food sources using stomach-content and stable-isotope analyses were carried out to determine how P. cromis food sources change with water quality and how this may affect P. cromis diet. Gut-content analysis indicated P. cromis selectively consumed bivalves Mulinia lateralis and Anomalocardia auberiana. Isotope compositions demonstrated that P. cromis relied on these benthic food resources produced in the Baffin Bay estuary year-round. Biomass and densities of these bivalves were influenced by changes in water quality variables, particularly salinity and dissolved oxygen. Thus, this paper demonstrates the relationship between water quality variables, benthic macrofauna, and their use as food resources by a carnivorous fish species, and emphasizes the need for integrated assessments when studying the effects of water quality on ecosystem function. Holistic approaches such as these can provide important information for management and conservation of fishery resources and can improve predictions of ecosystem response to climate variability. This article is protected by copyright. All rights reserved. This article is protected by copyright. All rights reserved.

Macrofauna regulate heterotrophic bacterial carbon and nitrogen incorporation in low-oxygen sediments

PubMed Central

Hunter, William R; Veuger, Bart; Witte, Ursula

2012-01-01

Oxygen minimum zones (OMZs) currently impinge upon >1 million km2 of sea floor and are predicted to expand with climate change. We investigated how changes in oxygen availability, macrofaunal biomass and retention of labile organic matter (OM) regulate heterotrophic bacterial C and N incorporation in the sediments of the OMZ-impacted Indian continental margin (540–1100 m; [O2]=0.35–15 μmol l−1). In situ pulse-chase experiments traced 13C:15N-labelled phytodetritus into bulk sediment OM and hydrolysable amino acids, including the bacterial biomarker 𝒟-alanine. Where oxygen availability was lowest ([O2]=0.35 μmol l−1), metazoan macrofauna were absent and bacteria assimilated 30–90% of the labelled phytodetritus within the sediment. At higher oxygen levels ([O2]=2–15 μmol l−1) the macrofaunal presence and lower phytodetritus retention with the sediment occur concomitantly, and bacterial phytodetrital incorporation was reduced and retarded. Bacterial C and N incorporation exhibited a significant negative relationship with macrofaunal biomass across the OMZ. We hypothesise that fauna–bacterial interactions significantly influence OM recycling in low-oxygen sediments and need to be considered when assessing the consequences of global change on biogeochemical cycles. PMID:22592818

Climate Change, Sea-Level Rise and Implications for Coastal and Estuarine Shoreline Management with Particular Reference to the Ecology of Intertidal Benthic Macrofauna in NW Europe

PubMed Central

Fujii, Toyonobu

2012-01-01

In many European estuaries, extensive areas of intertidal habitats consist of bare mudflats and sandflats that harbour a very high abundance and biomass of macrobenthic invertebrates. The high stocks of macrobenthos in turn provide important food sources for the higher trophic levels such as fish and shorebirds. Climate change and associated sea-level rise will have potential to cause changes in coastal and estuarine physical properties in a number of ways and thereby influence the ecology of estuarine dependent organisms. Although the mechanisms involved in biological responses resulting from such environmental changes are complex, the ecological effects are likely to be significant for the estuarine benthic macrofauna and hence the consumers they support. This paper reviews the utilisation patterns of estuarine intertidal habitats by shorebirds, fish and crustaceans, as well as factors affecting the distribution, abundance and biomass of estuarine macrobenthos that is known to be important food source for these estuarine predators. This study also provides simple conceptual models of the likely impacts of sea-level rise on the physical and biological elements of estuarine intertidal habitats, and implications of these results are discussed in the context of sustainable long term flood and coastal management in estuarine environments. PMID:24832510

Changes in Benthos Associated with Mussel (Mytilus edulis L.) Farms on the West-Coast of Scotland

PubMed Central

Wilding, Thomas A.; Nickell, Thomas D.

2013-01-01

Aquaculture, as a means of food production, is growing rapidly in response to an increasing demand for protein and the over-exploitation of wild fisheries. This expansion includes mussels (family Mytilidae) where production currently stands at 1.5 million tonnes per annum. Mussel culture is frequently perceived as having little environmental impact yet mussel biodeposits and shell debris accumulate around the production site and are linked to changes in the benthos. To assess the extent and nature of changes in benthos associated with mussel farming grab and video sampling around seven mussel farms was conducted. Grab samples were analysed for macrofauna and shell-hash content whilst starfish were counted and the shell-hash cover estimated from video imaging. Shell-hash was patchily distributed and occasionally dominated sediments (maximum of 2116 g per 0.1 m2 grab). Mean shell-hash content decreased rapidly at distances >5 m from the line and, over the distance 1–64 m, decreased by three orders of magnitude. The presence of shell-hash and the distance-from-line influenced macrofaunal assemblages but this effect differed between sites. There was no evidence that mussel farming was associated with changes in macrobenthic diversity, species count or feeding strategy. However, total macrofaunal count was estimated to be 2.5 times higher in close proximity to the lines, compared with 64 m distance, and there was evidence that this effect was conditional on the presence of shell-hash. Starfish density varied considerably between sites but, overall, they were approximately 10 times as abundant close to the mussel-lines compared with 64 m distance. There was no evidence that starfish were more abundant in the presence of shell-hash visible on the sediment surface. In terms of farm-scale benthic impacts these data suggest that mussel farming is a relatively benign way of producing food, compared with intensive fish-farming, in similar environments. PMID:23874583

Hadal disturbance in the Japan Trench induced by the 2011 Tohoku–Oki Earthquake

PubMed Central

Oguri, Kazumasa; Kawamura, Kiichiro; Sakaguchi, Arito; Toyofuku, Takashi; Kasaya, Takafumi; Murayama, Masafumi; Fujikura, Katsunori; Glud, Ronnie N.; Kitazato, Hiroshi

2013-01-01

In situ video observations and sediment core samplings were performed at two hadal sites in the Japan Trench on July, 2011, four months after the Tohoku–Oki earthquake. Video recordings documented dense nepheloid layers extending ~30–50 m above the sea bed. At the trench axis, benthic macrofauna was absent and dead organisms along with turbid downslope current were observed. The top 31 cm of sediment in the trench axis revealed three recent depositions events characterized by elevated 137Cs levels and alternating sediment densities. At 4.9 km seaward from the trench axis, little deposition was observed but the surface sediment contained 134Cs from the Fukushima Dai–ichi nuclear disaster. We argue that diatom blooms observed by remote sensing facilitated rapid deposition of 134Cs to hadal environment and the aftershocks induced successive sediment disturbances and maintained dense nepheloid layers in the trench even four months after the mainshock. PMID:23715086

Presence of Foraminifera of Superfamily Komokioidea (Order Astrorhizida) in Colombian deep Caribbean waters.

PubMed

Tavera-Martínez, Laura; Marchant, Margarita

2017-10-20

Research regarding deep-sea benthic foraminifera in the Colombian Caribbean requires further development given the complete lack of information related to the different groups that constitute associations and the ecological functions they fulfill. For this purpose, a taxonomic description of Superfamily Komokioidea was composed from macrofauna samples from between 1,215 m and 3,179 m depth, obtained during the research cruise ANH-COL 4 and COL 5 carried out in 2014. Results showed foraminifera belonging to the three families: Komokiidae, Baculellidae, and Normaninidae, inclu-ding five genera (Lana, Komokia, Ipoa, Normaninam, and Catena) and five species (Lana neglecta, Komokia multiramosa, Normanina conferta, Ipoa fragila, and Catena piriformis). This study presents knowledge regarding deep-sea Colombian Caribbean benthic foraminifera, which to date have not been recorded from this region. Their depth distribution when compared with other studies from the Atlantic and Pacific, allows the expansion of taxonomic inventories and the characterization of biodiversity within poorly explored regions.

A Comparison of the Macrofauna of Natural and Replanted Mangroves in Qatar

NASA Astrophysics Data System (ADS)

Al-Khayat, J. A.; Jones, D. A.

1999-08-01

The present investigation quantifies the biodiversity of the Brachyura and fish living within the natural mangrove Avicennia marina, salt marsh and replanted mangal, and compares relevant features of the abiotic and biotic environments of these habitats. Measurements of sediment organic matter, grain size, soil water pH and the moisture content indicate that the natural mangrove areas have lowest mean grain size, pH, and highest organic and moisture contents. Planted mangrove areas have a higher mean grain size and slightly higher pH, but lower organic and moisture contents. Differences occur between brachyurans in planted and natural mangrove areas, but the biodiversity was similar between salt marsh and natural mangrove areas. Nasima dotilliformis was the only crab which did not occur at all planted mangrove sites, while Serenella leachii was missing from natural mangrove. Juvenile fish species enter mangroves, using these as nursery grounds, and quantitative sampling indicates that mangrove areas, especially pneumatophores, form a special habitat for these small fish.

Macrofaunal assemblages associated with the sponge Sarcotragus foetidus Schmidt, 1862 (Porifera: Demospongiae) at the coasts of Cyprus and Greece.

PubMed

Pavloudi, Christina; Christodoulou, Magdalini; Mavidis, Michalis

2016-01-01

This paper describes a dataset of macrofaunal organisms associated with the sponge Sarcotragus foetidus Schmidt, 1862, collected by scuba diving from two sampling sites: one in Greece (North Aegean Sea) and one in Cyprus (Levantine Sea). This dataset includes macrofaunal taxa inhabiting the demosponge Sarcotragus foetidus and contributes to the ongoing efforts of the Ocean Biogeographic Information System (OBIS) which aims at filling the gaps in our current knowledge of the world's oceans. This is the first paper, to our knowledge, where the macrofauna associated with S. foetidus from the Levantine Basin is being recorded. In total, 90 taxa were recorded, from which 83 were identified to the species level. Eight of these species are new records for the Levantine Basin. The dataset contains 213 occurrence records, fully annotated with all required metadata. It is accessible at http://lifewww-00.her.hcmr.gr:8080/medobis/resource.do?r=organismic_assemblages_sarcotragus_foetidus_cyprus_greece.

Macrobenthic turnover in the subtidal Wadden Sea: The Norderaue revisited after 60 years

NASA Astrophysics Data System (ADS)

Reise, K.; Schubert, A.

1987-03-01

The benthic macrofauna of a tidal inlet in the northern Wadden Sea was sampled with grab and dredge in 1924 1926 (Hagmeier & Kändler, 1927), and again in 1985 and 1986. The comparison of surveys from consecutive years, as well as observations from an adjacent area, are employed to separate spurious from real long-term changes. Several epibenthic species of the 1920s became rare or absent in the 1980s. Oyster beds and reefs of the colonial polychaete Sabellaria spinulosa have disappeared completely. On the other hand, mussel beds have extended their range, and the abundance of mobile infauna has increased. The total number of species has remained approximately the same. Compared to surveys from consecutive years, the 60-year interval has doubled the species turnover rate, and has decreased the similarity in relative abundances by one third. The observed losses are best explained by the impact of dredging and trawling on the benthic fauna, while gains seem to indicate coastal eutrophication.

Electrogenic sulfur oxidation in a northern saltmarsh (St. Lawrence Estuary, Canada).

PubMed

Rao, Alexandra; Risgaard-Petersen, Nils; Neumeier, Urs

2016-06-01

Measurements of porewater O2, pH, and H2S microprofiles in intact sediment cores collected in a northern saltmarsh in the St. Lawrence Estuary (Quebec, Canada) revealed the occurrence of electrogenic sulfur oxidation (e-SOx) by filamentous "cable" bacteria in submerged marsh pond sediments in the high marsh. In summer, the geochemical fingerprint of e-SOx was apparent in intact cores, while in fall, cable bacteria were detected by fluorescence in situ hybridization and the characteristic geochemical signature of e-SOx was observed only upon prolonged incubation. In exposed, unvegetated creek bank sediments sampled in the low marsh in summer, cable bacteria developed only in repacked cores of sieved (500 μm), homogenized sediments. These results suggest that e-SOx is suppressed by the activity of macrofauna in exposed, unvegetated marsh sediments. A reduced abundance of benthic invertebrates may promote e-SOx development in marsh ponds, which are dominant features of subarctic saltmarshes as in the St. Lawrence Estuary.

The Link between Microbial Diversity and Nitrogen Cycling in Marine Sediments Is Modulated by Macrofaunal Bioturbation.

PubMed

Yazdani Foshtomi, Maryam; Braeckman, Ulrike; Derycke, Sofie; Sapp, Melanie; Van Gansbeke, Dirk; Sabbe, Koen; Willems, Anne; Vincx, Magda; Vanaverbeke, Jan

2015-01-01

The marine benthic nitrogen cycle is affected by both the presence and activity of macrofauna and the diversity of N-cycling microbes. However, integrated research simultaneously investigating macrofauna, microbes and N-cycling is lacking. We investigated spatio-temporal patterns in microbial community composition and diversity, macrofaunal abundance and their sediment reworking activity, and N-cycling in seven subtidal stations in the Southern North Sea. Our results indicated that bacteria (total and β-AOB) showed more spatio-temporal variation than archaea (total and AOA) as sedimentation of organic matter and the subsequent changes in the environment had a stronger impact on their community composition and diversity indices in our study area. However, spatio-temporal patterns of total bacterial and β-AOB communities were different and related to the availability of ammonium for the autotrophic β-AOB. Highest bacterial richness and diversity were observed in June at the timing of the phytoplankton bloom deposition, while richness of β-AOB as well as AOA peaked in September. Total archaeal community showed no temporal variation in diversity indices. Distance based linear models revealed that, independent from the effect of grain size and the quality and quantity of sediment organic matter, nitrification and N-mineralization were affected by respectively the diversity of metabolically active β-AOB and AOA, and the total bacteria, near the sediment-water interface. Separate models demonstrated a significant and independent effect of macrofaunal activities on community composition and richness of total bacteria, and diversity indices of metabolically active AOA. Diversity of β-AOB was significantly affected by macrofaunal abundance. Our results support the link between microbial biodiversity and ecosystem functioning in marine sediments, and provided broad correlative support for the hypothesis that this relationship is modulated by macrofaunal activity. We hypothesized that the latter effect can be explained by their bioturbating and bio-irrigating activities, increasing the spatial complexity of the biogeochemical environment.

Modelling potential impacts of bottom trawl fisheries on soft sediment biogeochemistry in the North Sea†

PubMed Central

Duplisea, Daniel E; Jennings, Simon; Malcolm, Stephen J; Parker, Ruth; Sivyer, David B

2001-01-01

Bottom trawling causes physical disturbance to sediments particularly in shelf areas. The disturbance due to trawling is most significant in deeper areas with softer sediments where levels of natural disturbance due to wave and tidal action are low. In heavily fished areas, trawls may impact the same area of seabed more than four times per year. A single pass of a beam trawl, the heaviest gear routinely used in shelf sea fisheries, can kill 5–65% of the resident fauna and mix the top few cm of sediment. We expect that sediment community function, carbon mineralisation and biogeochemical fluxes will be strongly affected by trawling activity because the physical effects of trawling are equivalent to those of an extreme bioturbator, and yet, unlike bioturbating macrofauna, trawling does not directly contribute to community metabolism. We used an existing box-model of a generalised soft sediment system to examine the effects of trawling disturbance on carbon mineralisation and chemical concentrations. We contrasted the effects of a natural scenario, where bioturbation is a function of macrobenthos biomass, with an anthropogenic impact scenario where physical disturbance results from trawling rather than the action of bioturbating macrofauna. Simulation results suggest that the effects of low levels of trawling disturbance will be similar to those of natural bioturbators but that high levels of trawling disturbance prevent the modelled system from reaching equilibrium due to large carbon fluxes between oxic and anoxic carbon compartments. The presence of macrobenthos in the natural disturbance scenario allowed sediment chemical storage and fluxes to reach equilibrium. This is because the macrobenthos are important carbon consumers in the system whose presence reduces the magnitude of available carbon fluxes. In soft sediment systems, where the level physical disturbance due to waves and tides is low, model results suggest that intensive trawling disturbance could cause large fluctuations in benthic chemical fluxes and storage. PMID:16759420

Modelling potential impacts of bottom trawl fisheries on soft sediment biogeochemistry in the North Sea.

PubMed

Duplisea, D E; Jennings, S; Malcolm, S J; Parker, R; Sivyer, D B

2001-12-19

Bottom trawling causes physical disturbance to sediments particularly in shelf areas. The disturbance due to trawling is most significant in deeper areas with softer sediments where levels of natural disturbance due to wave and tidal action are low. In heavily fished areas, trawls may impact the same area of seabed more than four times per year. A single pass of a beam trawl, the heaviest gear routinely used in shelf sea fisheries, can kill 5-65% of the resident fauna and mix the top few cm of sediment. We expect that sediment community function, carbon mineralisation and biogeochemical fluxes will be strongly affected by trawling activity because the physical effects of trawling are equivalent to those of an extreme bioturbator, and yet, unlike bioturbating macrofauna, trawling does not directly contribute to community metabolism. We used an existing box-model of a generalised soft sediment system to examine the effects of trawling disturbance on carbon mineralisation and chemical concentrations. We contrasted the effects of a natural scenario, where bioturbation is a function of macrobenthos biomass, with an anthropogenic impact scenario where physical disturbance results from trawling rather than the action of bioturbating macrofauna. Simulation results suggest that the effects of low levels of trawling disturbance will be similar to those of natural bioturbators but that high levels of trawling disturbance prevent the modelled system from reaching equilibrium due to large carbon fluxes between oxic and anoxic carbon compartments. The presence of macrobenthos in the natural disturbance scenario allowed sediment chemical storage and fluxes to reach equilibrium. This is because the macrobenthos are important carbon consumers in the system whose presence reduces the magnitude of available carbon fluxes. In soft sediment systems, where the level physical disturbance due to waves and tides is low, model results suggest that intensive trawling disturbance could cause large fluctuations in benthic chemical fluxes and storage.

Heterometric sediment and benthic micro-habitat: In situ and experimental approaches.

NASA Astrophysics Data System (ADS)

Navon, Maxime; Dauvin, Jean-Claude; Lesourd, Sandric

2016-04-01

The eastern Bay of Seine and its estuary are characterized by complex sediment structures with high temporal, spatial and vertical heterogeneities. As the result of different hydrodynamics forcing, estuary is a particular area with fine sediment accumulation since the last decades. This complex system involves particular relationships between benthic species and the environment. Dominant species show particular traits of life: bentho-pelagic reproductive cycle, burrowing, tubicoulous, surface and subsurface species. Moreover, species behaviours are different according to the sediment properties: grain size, stratification, texture, silt and clay contents… Although benthic macrofauna and sediment relationship is often describe as the major factor structuring benthic communities, no spatial and temporal relationships has been highlighted in this area. So, our study is focused on the relationship between species and sediment at the individual scale and on micro-habitats. The aim of the study is to define the macrofauna vertical distribution to understand how the sediment structure acts on organisms and the organism behaviour in a heterometric sediment context, i.e. how organisms act in return on the sediment structure. An in situ approach is used to answer these questions with four campaigns on board on the Oceanographic Vessel 'Le Côtes de la Manche'. A total of 43 cores (16 cm diameter, 35 cm high) in three typical sediment facies are sampled. Cores are analysed with Computer-Aided Tomography scan (Cyceron Laboratory, Caen) to 3D visualize organisms and to determine volumetric space occupation by biogenic structures. The same cores are transversally cut to check the species out and to analyse sediment parameters (grain size, organic matter and other chemical components on XRF device). Results show that most of the organism are closed to the surface sediment but also that some species, even small size individuals, are found deeper in the sediment-column until 9 cm depth. This approach gives nondestructive 3D picture on the organism position in sediment and provides information on the manner how sediment structure acts on organisms and in return how organisms disturb sediment structure.

Spatiotemporal patterns of the macrofaunal community structure in the East China Sea, off the coast of Zhejiang, China, and the impact of the Kuroshio Branch Current.

PubMed

Xu, Yong; Yu, Fei; Li, Xinzheng; Ma, Lin; Dong, Dong; Kou, Qi; Sui, Jixing; Gan, Zhibin; Gong, Lin; Yang, Mei; Wang, Yueyun; Sun, Yue; Wang, Jinbao; Wang, Hongfa

2018-01-01

The Kuroshio Current intrudes in the bottom layer of the East China Sea continental shelf from the northeast of Taiwan via two bottom branches named the Nearshore Kuroshio Branch Current (NKBC, along the 60 m isobath) and the Offshore Kuroshio Branch Current (OKBC, along the 100 m isobath). However, knowledge on the macrofaunal responses to these bottom branches is limited. This study examined the variations in the benthic macrofaunal community in a section of the East China Sea under the influence of the NKBC. Seven sites corresponding to three regions (the west, middle and east region) were sampled using an Agassiz trawl net at a monthly rate from February to November 2015 (except in August). A total of 270 macrofaunal species were collected in this study. Cluster analysis and nMDS ordination revealed three communities: the inshore, Kuroshio and offshore communities, roughly corresponding to the west, middle and east of NKBC route. Significant differences in the species composition (one-way PERMANOVA) and diversity indices (one-way ANOVA) among the regions and communities were observed, while no statistically significant difference among the months was detected. The indicator species also varied among the communities, with Sternaspis scutata and Odontamblyopus rubicundus dominating the inshore community, Camatopsis rubida, Schizaster lacunosus and Craspidaster hesperus dominating the Kuroshio community, and Portunus argentatus, Champsodon snyderi and Coelorinchus multispinulosus dominating the offshore community. Some rare species (e.g., Neobythites sivicola) may indicate the passage of the NKBC better than the indicator species. A redundancy analysis was used to describe the relationship between the macrofaunal species and environmental variables in this study. Water depth and turbidity played important roles in the distribution of the macrofauna. S. scutata and O. rubicundus were associated with high turbidity and shallow depth, while Plesionika izumiae and P. argentatus were associated with low turbidity and deep depth. This study outlines the impact of the NKBC on the distribution patterns of the macrofaunal community of the East China Sea. More studies are needed to understand the detailed interactions between macrofauna and the NKBC in the future.

Biodiversity and community composition of sediment macrofauna associated with deep-sea Lophelia pertusa habitats in the Gulf of Mexico

USGS Publications Warehouse

Demopoulos, Amanda W.J.; Bourque, Jill R.; Frometa, Janessy

2014-01-01

Scleractinian corals create three-dimensional reefs that provide sheltered refuges, facilitate sediment accumulation, and enhance colonization of encrusting fauna. While heterogeneous coral habitats can harbor high levels of biodiversity, their effect on the community composition within nearby sediments remains unclear, particularly in the deep sea. Sediment macrofauna from deep-sea coral habitats (Lophelia pertusa) and non-coral, background sediments were examined at three sites in the northern Gulf of Mexico (VK826, VK906, MC751, 350–500 m depth) to determine whether macrofaunal abundance, diversity, and community composition near corals differed from background soft-sediments. Macrofaunal densities ranged from 26 to 125 individuals 32 cm−2 and were significantly greater near coral versus background sediments only at VK826. Of the 86 benthic invertebrate taxa identified, 16 were exclusive to near-coral habitats, while 14 were found only in background sediments. Diversity (Fisher’s α) and evenness were significantly higher within near-coral sediments only at MC751 while taxon richness was similar among all habitats. Community composition was significantly different both between near-coral and background sediments and among the three primary sites. Polychaetes numerically dominated all samples, accounting for up to 70% of the total individuals near coral, whereas peracarid crustaceans were proportionally more abundant in background sediments (18%) than in those near coral (10%). The reef effect differed among sites, with community patterns potentially influenced by the size of reef habitat. Taxon turnover occurred with distance from the reef, suggesting that reef extent may represent an important factor in structuring sediment communities near L. pertusa. Polychaete communities in both habitats differed from other Gulf of Mexico (GOM) soft sediments based on data from previous studies, and we hypothesize that local environmental conditions found near L. pertusa may influence the macrofaunal community structure beyond the edges of the reef. This study represents the first assessment of L. pertusa-associated sediment communities in the GOM and provides baseline data that can help define the role of transition zones, from deep reefs to soft sediments, in shaping macrofaunal community structure and maintaining biodiversity; this information can help guide future conservation and management activities.

Marine environmental impact assessment of abalone, Haliotis discus hannai, cage farm in Wan-do, Republic of Korea

NASA Astrophysics Data System (ADS)

Oh, Hyun-Taik; Jung, Rae-Hong; Cho, Yoon-Sik; Hwang, Dong-Woon; Yi, Yong-Min

2015-12-01

To assess the marine environmental impacts of abalone, Haliotis discus hannai, cage farms in Wan-do, we monitored the benthic environment on top of the sediment underneath cage farm stations and reference stations. We applied two methods for this assessment. One was the A- and B-investigation of the MOM system (Modeling-On fish farm-Monitoring) developed in Norway. The other was a general environmental monitoring method which is widely used. In this study, we found benthic animals in all samples that belonged to condition 1 which were based on group 1(presence of macrofauna) of the B-investigation method. The values of redox potential (group 2-pH, redox potential) in all samples were above +65 mV belonging to condition 1. Based on sensory results (group 3-gas, color, odor, thickness of deposits), five out of seven experiment samples showed condition 1 while stations 2 and 7 showed condition 2, which have been cultured for 10 years in semi-closed waters. As group 2 takes precedence over group 3, the level of the conditions for B-investigation results consequently showed condition 1 in all stations. We found that pollutants and trace metals in the sediment underneath cage farms were lower than the pollution standard. This led us to conclude that the environmental impacts of the cage farms in this study were not significant.

Estuarine biodiversity as an indicator of groundwater discharge

NASA Astrophysics Data System (ADS)

Silva, A. C. F.; Tavares, P.; Shapouri, M.; Stigter, T. Y.; Monteiro, J. P.; Machado, M.; Cancela da Fonseca, L.; Ribeiro, L.

2012-01-01

Communities located in the interface between marine/brackish and freshwater habitats are likely to be early responders to climatic changes as they are exposed to both saline and freshwater conditions, and thus are expected to be sensitive to any change in their environmental conditions. Climatic effects are predicted to reduce the availability of groundwater, altering the hydrological balance on estuarine-aquifer interfaces. Here, we aimed to characterise the estuarine faunal community along a gradient dependent on groundwater input, under a predicted climatic scenario of reduction in groundwater discharge into the estuary. Sediment macrofauna was sampled along a salinity gradient following both the wet and dry seasons in 2009. Results indicated that species abundance varied significantly with the salinity gradient created by the groundwater discharge into the estuarine habitat and with sampling time. The isopode Cyathura carinata (Krøyer, 1847) and the polychaetes Heteromastus filiformis (Claparède, 1864) and Hediste diversicolor O.F. Muller, 1776 were associated with the more saline locations, while oligochaeta and Spionidae were more abundant in areas of lower salinity. The polychaete Alkmaria romijni Horst, 1919 was the dominant species and ubiquitous throughout sampling stations. This study provides evidence for estuarine fauna to be considered as a potentially valuable indicator of variation in the input of groundwater into marine-freshwater interface habitats, expected from climatic pressures on aquifer levels, condition and recharge rates. For instance, a reduction in the abundance of some polychaete species, found here to be more abundant in freshwater conditions, and increasing Oligochaeta found here on higher salinities, can potentially be early warnings of a reduction in the input of groundwater into estuaries. Estuarine benthic species are often the main prey for commercially important fish predators such as in our case study, making it important to monitor the aquatic habitat interfaces taking into consideration the estuarine macrobenthos and groundwater availability in the system.

Species Profiles: Life Histories and Environmental Requirements of Coastal Vertebrates and Invertebrates Pacific Ocean Region. Report 3. Amphidromous Macrofauna of Hawaiian Island Streams

DTIC Science & Technology

1990-08-01

history pat- Chordata, Class Osteichthyes; Mol- terns occur in many areas of partic- lusca, Class Gastropoda ; and ular concern to agencies of the Arthropoda...Endemic (Randall, 1840) Phylum Mollusca Class Gastropoda Order Pulmonata Neritina granosa hihiwai Endemic Sowerby, 1825 wi Neritina vespertina hapawai...pp. Thesis. Zoology Department, 24 Haynes, A. 1988. Notes on the Park Resources Studies Unit, stream neritids ( Gastropoda ; Department of Botany

Potential for Biomagnification of Contaminants within Marine and Freshwater Food Webs

DTIC Science & Technology

1984-11-01

level. 17. In a turtle grass (Thalassia testudinum) community in Card Sound, Florida, Gilio and Segar (1976) found no indication of increased Cd...Florida, were reported by Gilio and Segar (1976). Table 6 shows that the highest mean Cu concentrations were 21, 12, 7.4, and 5.8 ppm, respectively...elements in Card Sound, Florida, showed no trend toward biomagnification of Pb ( Gilio and Segar 1976). The mean Pb concentrations in the macrofauna were

Macrobenthic diversity and sediment-water exchanges of oxygen and ammonium: Example of two subtidal communities of the eastern English Channel

NASA Astrophysics Data System (ADS)

Tous Rius, Armonie; Denis, Lionel; Dauvin, Jean-Claude; Spilmont, Nicolas

2018-06-01

In organic-rich shallow habitats, benthic macrofauna is known to play a major role in the geochemical functioning of surficial sediments through its metabolism, as well as its bioirrigation and/or bioturbation activity. In this paper, the effects of benthic macrofauna on metabolic fluxes at the sediment-water interface were studied at four dates, from winter to late summer, on two major macrobenthic communities of the eastern English Channel (macrotidal system): the fine sand Abra alba community (2 stations) and the sandy gravel Ophiothrix fragilis community (1 station). Oxygen and ammonium fluxes showed temporal changes that could be attributed to the variation of sea water temperature. Once the effect of temperature removed (using Q10 = 2.5), the average fauna mediated fluxes (FFauna) represented respectively 77% and 76% of average total fluxes. Considering the whole dataset, species number and biomass showed a significant correlation with fauna mediated fluxes of O2 and NH4+, while the relationships with abundance were not significant. The species composition of the community might influence ecosystem functioning, but in the present study, functional groups have a very poor relationship with FFauna (O2) and FFauna (NH4+). Despite the presence of engineer species, establishing general and simple rules to link macrofaunal parameters to functional attributes remains very difficult, suggesting that communities rather followed the idiosyncrasy and rivet hypothesis.

Seagrass vegetation and meiofauna enhance the bacterial abundance in the Baltic Sea sediments (Puck Bay).

PubMed

Jankowska, Emilia; Jankowska, Katarzyna; Włodarska-Kowalczuk, Maria

2015-09-01

This study presents the first report on bacterial communities in the sediments of eelgrass (Zostera marina) meadows in the shallow southern Baltic Sea (Puck Bay). Total bacterial cell numbers (TBNs) and bacteria biomass (BBM) assessed with the use of epifluorescence microscope and Norland's formula were compared between bare and vegetated sediments at two localities and in two sampling summer months. Significantly higher TBNs and BBM (PERMANOVA tests, P < 0.05) were recorded at bottom covered by the seagrass meadows in both localities and in both sampling months. The relationships between bacteria characteristics and environmental factors (grain size, organic matter, photopigments in sediments), meiofauna and macrofauna densities, as well as macrophyte vegetation characteristics (shoot density, phytobenthos biomass) were tested using PERMANOVA distance-based linear model (DISTLM) procedures and showed that the main factors explaining bacteria characteristics are bottom type (vegetated vs. unvegetated) and meiofauna density. These two factors explained together 48.3% of variability in TBN and 40.5% in BBM, and their impacts did not overlap (as indicated by DISTLM sequential tests) demonstrating the different natures of these relationships. The effects of seagrass were most probably related to the increase of organic matter and providing habitat while higher numbers of meiofauna organisms may have stimulated the bacterial growth by increased grazing.

The use of time-series data in the assessment of macrobenthic community change after the cessation of sewage-sludge disposal in Liverpool Bay (UK).

PubMed

Whomersley, P; Schratzberger, M; Huxham, M; Bates, H; Rees, H

2007-01-01

Sewage sludge was disposed of in Liverpool Bay for over 100 years. Annual amounts increased from 0.5 million tonnes per annum in 1900 to approximately 2 million tonnes per annum by 1995. Macrofauna and a suite of environmental variables were collected at a station adjacent to, and a reference station distant from, the disposal site over 13 years, spanning a pre- (1990-1998) and post- (1999-2003) cessation period. Univariate and multivariate analyses of the time-series data showed significant community differences between reference and disposal site stations and multivariate analyses revealed station-specific community development post-disposal. Temporal variability of communities collected at the disposal station post-cessation was higher than during years of disposal, when temporally stable dominance patterns of disturbance-tolerant species had established. Alterations of community structure post-disturbance reflected successional changes possibly driven by facilitation. Subtle faunistic changes at the Liverpool Bay disposal site indicate that the near-field effects of the disposal of sewage sludge were small and therefore could be considered environmentally acceptable.

Environmental Support for Project WEAP (Weapons Environmental Acoustic Program), East of Montauk Point, New York, 7-28 May 1982.

DTIC Science & Technology

1983-10-01

scatterer of acoustic energy. During May, the * The objective of Project WEAP (Weapons sound speed gradient would be slightly Environmental Acoustics...remotely collected box site the experiment in a homogeneous cores for small macrofaunal animals. area or at least in an area where heter- Megafauna must...variety of sediment types. bation by both megafauna and macrofauna. DThis data may be required to understand During or after the acoustic experiment, the

Shallow Scattering Layer (SSL): Emergence Behaviors of Coastal Macrofauna

DTIC Science & Technology

2003-09-30

group ascent and descent speeds were slower than those found in a deeper water column in Puget Sound by Kringel et al. ( 2003) despite the order...instruments separated by 50 m show high coherence, but they were collected at the same water depth. Our initial data record for West Sound , Orcas Island...West Sound , Orcas Island, Washington Volume backscattering strength at 265 kHz (dB) H ei g h t ab o v e T A P S ( m ) 0 0 10 20 midnight midnight

Low faunal diversity on Maltese sandy beaches: fact or artefact?

NASA Astrophysics Data System (ADS)

Deidun, Alan; Azzopardi, Marthese; Saliba, Stephen; Schembri, Patrick J.

2003-10-01

Eight sandy beaches on Malta and two on Gozo were sampled for macrofauna to test the hypothesis that Maltese beaches have an intrinsically low diversity. Stations distributed in the supralittoral (dry zone), mediolittoral (wet zone) and upper infralittoral (submerged zone to 1 m water depth) were sampled by sieving core samples and standardised searching during daytime, and pitfall trapping and standardised sweeping of the water column using a hand-net at night, as appropriate. Physical parameters of the sediment were measured and human occupancy of the beaches was estimated. From the supralittoral and mediolittoral, 39 species represented by 1584 individuals were collected by the combined techniques of pitfall trapping, sieving and standard searching. For Ramla beach, which had the highest diversity, 267 individuals representing 25 infaunal species were collected by sieving from a combined volume of 1.175 m 3 of sand, and 149 individuals representing 28 epifaunal species were collected by standardised searching from a combined area of 700 m 2 of sand during two winter and two summer sampling sessions between 1992 and 1993. For nine other beaches sampled during the summer of 2000, only six macrofaunal species were collected from core samples, with overall population densities ranging from 4.13 to 45.45 individuals m -2. Only 92 individuals belonging to 12 species were collected by hand-net from the uppermost infralittoral of five beaches sampled using this method during the summer of 2000. Taxa of gastropods, bivalves, decapods, mysids and staphylinid beetles generally abundant on Mediterranean sandy beaches, were entirely absent from the beaches sampled. Few correlations that could explain the impoverishment of Maltese sandy beaches were found between physical parameters and faunal abundances, and other factors such as inadequate sampling effort, human disturbance and marine pollution were also excluded; however, seasonally biased sampling may partly explain the results obtained. One factor that may explain why certain species are missing could be lack of recruitment, due to Malta's geographical isolation from the European and African mainlands.

Species Composition and Barotolerance of Gut Microflora of Deep-Sea Benthic Macrofauna Collected at Various Depths in the Atlantic Ocean

PubMed Central

Ohwada, Kouichi; Tabor, Paul S.; Colwell, Rita R.

1980-01-01

The bacterial flora of marine animals collected at depths of 570 to 2,446 m was examined for population size and generic composition, and the barotolerant characteristics of selected bacterial isolates were determined. Total numbers of culturable, aerobic, heterotrophic bacteria were found to be low in animals collected at the greatest ocean depths sampled in this study. Vibrio spp. were predominant in 10 of 15 samples examined, and Photobacterium spp. and yeasts were the major components of the remainder. Pseudomonas, Achromobacter, and Flavobacterium spp. comprised minor components of the gut flora of deep-sea fish. Forty-six pure cultures isolated from samples of seven animals were tested for growth or viability after incubation for 1 week under pressures ranging from 100 to 750 atm. Strains of bacteria isolated from samples of fish intestine were more barotolerant than those from the stomach (P<0.01). When incubated at a pressure of 600 atm, viability of bacterial cultures originally isolated from fish caught at a depth of 570 m was significantly decreased in comparison with viability of cultures from animals caught at depths of 1,393 and 2,446 m (P<0.01). From results of this study, it is concluded that the gut microflora of animals that dwell in the deeper regions of the ocean are adapted to an increased hydrostatic pressure environment, that is, the gut microflora is less inhibited by elevated hydrostatic pressure with increasing depth from which the host animal was collected. PMID:16345648

Temporal and spatial variation in temperature experienced by macrofauna at Main Endeavour hydrothermal vent field

NASA Astrophysics Data System (ADS)

Lee, Raymond W.; Robert, Katleen; Matabos, Marjolaine; Bates, Amanda E.; Juniper, S. Kim

2015-12-01

A significant focus of hydrothermal vent ecological studies has been to understand how species cope with various stressors through physiological tolerance and biochemical resistance. Yet, the environmental conditions experienced by vent species have not been well characterized. This objective requires continuous observations over time intervals that can capture environmental variability at scales that are relevant to animals. We used autonomous temperature logger arrays (four roughly parallel linear arrays of 12 loggers spaced every 10-12 cm) to study spatial and temporal variations in the thermal regime experienced by hydrothermal vent macrofauna at a diffuse flow vent. Hourly temperatures were recorded over eight months from 2010 to 2011 at Grotto vent in the Main Endeavour vent field on the Juan de Fuca Ridge, a focus area of the Ocean Networks Canada cabled observatory. The conspicuous animal assemblages in video footage contained Ridgeia piscesae tubeworms, gastropods (primarily Lepetodrilus fucensis), and polychaetes (polynoid scaleworms and the palm worm Paralvinella palmiformis). Two dimensional spatial gradients in temperature were generally stable over the deployment period. The average temperature recorded by all arrays, and in some individual loggers, revealed distinctive fluctuations in temperature that often corresponded with the tidal cycle. We postulate that this may be related to changes in bottom currents or fluctuations in vent discharge. A marked transient temperature increase lasting over a period of days was observed in April 2011. While the distributions and behavior of Juan de Fuca Ridge vent invertebrates may be partially constrained by environmental temperature and temperature tolerance, except for the one transient high-temperature event, observed fluid temperatures were generally similar to the thermal preferences for some species, and typically well below lethal temperatures for all species. Average temperatures of the four arrays ranged from 4.1 to 11.0 °C during the deployment, indicating that on an hourly timescale the temperature conditions in this tubeworm community were fairly moderate and stable. The generality of these findings and behavioral responses of vent organisms to predictable rhythmicity and non-periodic temperature shifts are areas for further investigation.

The gut microenvironment of sediment-dwelling Chironomus plumosus larvae as characterised with O2, pH, and redox microsensors.

PubMed

Stief, Peter; Eller, Gundula

2006-09-01

We devised a set-up in which microsensors can be used for characterising the gut microenvironment of aquatic macrofauna. In a small flow cell, we measured microscale gradients through dissected guts (O(2), pH, redox potential [E ( h )]), in the haemolymph (O(2)), and towards the body surface (O(2)) of Chironomus plumosus larvae. The gut microenvironment was compared with the chemical conditions in the lake sediment in which the animals reside and feed. When the dissected guts were incubated at the same nominal O(2) concentration as in haemolymph, the gut content was completely anoxic and had pH and E ( h ) values slightly lower than in the ambient sediment. When the dissected guts were artificially oxygenated, the volumetric O(2)-consumption rates of the gut content were at least 10x higher than in the sediment. Using these potential O(2)-consumption rates in a cylindrical diffusion-reaction model, it was predicted that diffusion of O(2) from the haemolymph to the gut could not oxygenate the gut content under in vivo conditions. Additionally, the potential O(2)-consumption rates were so high that the intake of dissolved O(2) along with feeding could be ruled out to oxygenate the gut content. We conclude that microorganisms present in the gut of C. plumosus cannot exhibit an aerobic metabolism. The presented microsensor technique and the data analysis are applicable to guts of other macrofauna species with cutaneous respiration.

Exploitation of intertidal feeding resources by the red knot Calidris canutus under megatidal conditions (Bay of Saint-Brieuc, France)

NASA Astrophysics Data System (ADS)

Sturbois, Anthony; Ponsero, Alain; Desroy, Nicolas; Le Mao, Patrick; Fournier, Jérôme

2015-02-01

The feeding ecology of the red knot has been widely studied across its wintering range. Red knots mainly select bivalves and gastropods, with differences between sites due to variation in prey availability. The shorebird's diet is also influenced or controlled by the tidal regime. The aim of this paper is to demonstrate the adaptation of foraging red knots to the megatidal environment. The variation in their diet during tidal cycles was studied in the bay of Saint-Brieuc, a functional unit for this species. The method used combined macrofauna, distribution of foraging birds and diet data. Comparative spatial analyses of macrofauna and distribution of foraging red knots have shown that the bay's four benthic assemblages are exploited by birds. By analysing droppings, we highlighted that bivalve molluscs are the main component of their diet, as shown in most overwintering sites. Fifteen types of prey were identified and Donax vittatus was discovered to be a significant prey item. The relative proportion of each main prey item differs significantly depending on the benthic assemblage used to forage. All available benthic assemblages and all potential feeding resources can be used during a single tidal cycle, reflecting an adaptation to megatidal conditions. This approach develops accurate knowledge about the feeding ecology of birds which managers need in order to identify optimal areas for the conservation of waders based on the areas and resources actually used by the birds.

Geological and biological heterogeneity of the Aleutian margin (1965-4822 m)

NASA Astrophysics Data System (ADS)

Rathburn, A. E.; Levin, L. A.; Tryon, M.; Gieskes, J. M.; Martin, J. B.; Pérez, M. E.; Fodrie, F. J.; Neira, C.; Fryer, G. J.; Mendoza, G.; McMillan, P. A.; Kluesner, J.; Adamic, J.; Ziebis, W.

2009-01-01

Geological, biological and biogeochemical characterization of the previously unexplored margin off Unimak Island, Alaska between 1965 and 4822 m water depth was conducted to examine: (1) the geological processes that shaped the margin, (2) the linkages between depth, geomorphology and environmental disturbance in structuring benthic communities of varying size classes and (3) the existence, composition and nutritional sources of methane seep biota on this margin. The study area was mapped and sampled using multibeam sonar, a remotely operated vehicle (ROV) and a towed camera system. Our results provide the first characterization of the Aleutian margin mid and lower slope benthic communities (microbiota, foraminifera, macrofauna and megafauna), recognizing diverse habitats in a variety of settings. Our investigations also revealed that the geologic feature known as the “Ugamak Slide” is not a slide at all, and could not have resulted from a large 1946 earthquake. However, sediment disturbance appears to be a pervasive feature of this margin. We speculate that the deep-sea occurrence of high densities of Elphidium, typically a shallow-water foraminiferan, results from the influence of sediment redeposition from shallower habitats. Strong representation of cumacean, amphipod and tanaid crustaceans among the Unimak macrofauna may also reflect sediment instability. Although some faunal abundances decline with depth, habitat heterogeneity and disturbance generated by canyons and methane seepage appear to influence abundances of biota in ways that supercede any clear depth gradient in organic matter input. Measures of sediment organic matter and pigment content as well as C and N isotopic signatures were highly heterogeneous, although the availability of organic matter and the abundance of microorganisms in the upper sediment (1-5 cm) were positively correlated. We report the first methane seep on the Aleutian slope in the Unimak region (3263-3285 m), comprised of clam bed, pogonophoran field and carbonate habitats. Seep foraminiferal assemblages were dominated by agglutinated taxa, except for habitats above the seafloor on pogonophoran tubes. Numerous infaunal taxa in clam bed and pogonophoran field sediments and deep-sea “reef” cnidarians (e.g., corals and hydroids) residing on rocks near seepage sites exhibited light organic δ 13C signatures indicative of chemosynthetic nutritional sources. The extensive geological, biogeochemical and biological heterogeneity as well as disturbance features observed on the Aleutian slope provide an attractive explanation for the exceptionally high biodiversity characteristic of the world’s continental margins.

Reciprocal experimental transplantations to assess effects of organic enrichment on the recolonization of benthic macrofauna in a subtropical estuary.

PubMed

Gern, Fabiana Regina; Lana, Paulo da Cunha

2013-02-15

Coastal benthic habitats are usually in a state of continuous recolonization as a consequence of natural disturbances or human activities. Recolonization patterns can be strongly affected by the quality of the sediment. We evaluated herein the macrobenthic recolonization of organically enriched sediments through a manipulative experiment involving reciprocal transplants between contaminated and non-contaminated intertidal areas. Regardless of the experimental treatments, the density of the polychaete Capitella sp. was extremely high in the contaminated area as well as the density of the gastropod Cylichna sp. in the non-contaminated area. We rejected the hypothesis that differences in sediment quality would determine macrofaunal recolonization at least in the considered scales of space in meters and time in weeks. The recolonization process in a subtropical estuarine environment was strongly dependent on the migration of adults present in the sediments adjacent to the experimental units. Copyright © 2012 Elsevier Ltd. All rights reserved.

Weak and Habitat-Dependent Effects of Nutrient Pollution on Macrofaunal Communities of Southeast Australian Estuaries

PubMed Central

Nicastro, Andrea; Bishop, Melanie J.

2013-01-01

Among the impacts of coastal settlements to estuaries, nutrient pollution is often singled out as a leading cause of modification to the ecological communities of soft sediments. Through sampling of 48 sites, distributed among 16 estuaries of New South Wales, Australia, we tested the hypotheses that (1) anthropogenic nutrient loads would be a better predictor of macrofaunal communities than estuarine geomorphology or local sediment characteristics; and (2) local environmental context, as determined largely by sediment characteristics, would modify the relationship between nutrient loading and community composition. Contrary to the hypothesis, multivariate multiple regression analyses revealed that sediment grain size was the best predictor of macrofaunal assemblage composition. When samples were stratified according to median grain size, relationships between faunal communities and nitrogen loading and latitude emerged, but only among estuaries with sandier sediments. In these estuaries, capitellid and nereid polychaetes and chironomid larvae were the taxa that showed the strongest correlations with nutrient loading. Overall, this study failed to provide evidence of a differential relationship between diffuse nutrient enrichment and benthic macrofauna across a gradient of 7° of latitude and 4°C temperature. Nevertheless, as human population growth continues to place increasing pressure on southeast Australian estuaries, manipulative field studies examining when and where nutrient loading will lead to significant changes in estuarine community structure are needed. PMID:23799037

Spatio-temporal biodiversity of soft bottom macrofaunal assemblages in shallow coastal waters exposed to episodic hypoxic events.

PubMed

Veas, Rodrigo; Hernández-Miranda, Eduardo; Quiñones, Renato A; Carrasco, Franklin D

2012-07-01

The Humboldt Current System (HCS) has one of the three most important oxygen minimum zones (OMZ) of the global ocean. Several studies have looked at the macrofaunal benthic assemblages inhabiting the continental shelf and shallow bays off central-southern Chile associated with low oxygen areas, but little is known about open coast macrofaunal communities within this zone, which are frequently subjected to the low oxygen conditions of Equatorial Subsurface Waters (ESSW). In order to assess local and mesoscale coastal macrofauna dynamics, the sampling area (ca. 40 linear km) was divided into seven local zones (Cobquecura, southern Cobquecura, northern Itata, Itata River mouth, external, southern Itata, and Coliumo). Eight oceanographic cruises were carried out between May 2006 and February 2008 covering 16 coastal sampling sites, between 36°07'S and 36°30'S. The macrofaunal assemblage was dominated by polychaetes, crustaceans, and mollusks. Our results suggest a high degree of temporal faunal stability on the mesoscale in soft bottom communities along the open coast, given the persistence of a faunal assemblage dominated by organisms tolerant of low oxygen conditions. While there is some local variability in community attributes, the main structuring factor for soft bottom communities in the shallow coastal area off central-southern Chile is the seasonal intrusion of low oxygen ESSW. Copyright © 2012 Elsevier Ltd. All rights reserved.

Building a database for long-term monitoring of benthic macrofauna in the Pertuis-Charentais (2004-2014).

PubMed

Philippe, Anne S; Plumejeaud-Perreau, Christine; Jourde, Jérôme; Pineau, Philippe; Lachaussée, Nicolas; Joyeux, Emmanuel; Corre, Frédéric; Delaporte, Philippe; Bocher, Pierrick

2017-01-01

Long-term benthic monitoring is rewarding in terms of science, but labour-intensive, whether in the field, the laboratory, or behind the computer. Building and managing databases require multiple skills, including consistency over time as well as organisation via a systematic approach. Here, we introduce and share our spatially explicit benthic database, comprising 11 years of benthic data. It is the result of intensive benthic sampling that has been conducted on a regular grid (259 stations) covering the intertidal mudflats of the Pertuis-Charentais (Marennes-Oléron Bay and Aiguillon Bay). Samples were taken by foot or by boats during winter depending on tidal height, from December 2003 to February 2014. The present dataset includes abundances and biomass densities of all mollusc species of the study regions and principal polychaetes as well as their length, accessibility to shorebirds, energy content and shell mass when appropriate and available. This database has supported many studies dealing with the spatial distribution of benthic invertebrates and temporal variations in food resources for shorebird species as well as latitudinal comparisons with other databases. In this paper, we introduce our benthos monitoring, share our data, and present a "guide of good practices" for building, cleaning and using it efficiently, providing examples of results with associated R code. The dataset has been formatted into a geo-referenced relational database, using PostgreSQL open-source DBMS. We provide density information, measurements, energy content and accessibility of thirteen bivalve, nine gastropod and two polychaete taxa (a total of 66,620 individuals)​ for 11 consecutive winters. Figures and maps are provided to describe how the dataset was built, cleaned, and how it can be used. This dataset can again support studies concerning spatial and temporal variations in species abundance, interspecific interactions as well as evaluations of the availability of food resources for small- and medium size shorebirds and, potentially, conservation and impact assessment studies.

Field isotopic study of lead fate and compartmentalization in earthworm-soil-metal particle systems for highly polluted soil near Pb recycling factory.

PubMed

Goix, Sylvaine; Mombo, Stéphane; Schreck, Eva; Pierart, Antoine; Lévêque, Thibaut; Deola, Frédéric; Dumat, Camille

2015-11-01

Earthworms are important organisms in soil macrofauna and play a key role in soil functionality, and consequently in terrestrial ecotoxicological risk assessments. Because they are frequently observed in soils strongly polluted by metals, the influence of earthworm bioturbation on Pb fate could therefore be studied through the use of Pb isotopes. Total Pb concentrations and isotopic composition ((206)Pb, (207)Pb and (208)Pb) were then measured in earthworms, casts and bulk soils sampled at different distance from a lead recycling factory. Results showed decreasing Pb concentrations with the distance from the factory whatever the considered matrix (bulk soils, earthworm bodies or cast samples) with higher concentrations in bulk soils than in cast samples. The bivariate plot (208)Pb/(206)Pb ratios versus (206)Pb/(207)Pb ratios showed that all samples can be considered as a linear mixing between metallic process particulate matter (PM) and geochemical Pb background. Calculated anthropogenic fraction of Pb varied between approximately 84% and 100%. Based on Pb isotopic signatures, the comparison between casts, earthworms and bulk soils allowed to conclude that earthworms preferentially ingest the anthropogenic lead fraction associated with coarse soil organic matter. Actually, soil organic matter was better correlated with Pb isotopic ratios than with Pb content in soils. The proposed hypothesis is therefore a decrease of soil organic matter turnover due to Pb pollution with consequences on Pb distribution in soils and earthworm exposure. Finally, Pb isotopes analysis constitutes an efficient tool to study the influence of earthworm bioturbation on Pb cycle in polluted soils. Copyright © 2015 Elsevier Ltd. All rights reserved.

A rapid method to characterize seabed habitats and associated macro-organisms

USGS Publications Warehouse

Anderson, T.J.; Cochrane, G.R.; Roberts, D.A.; Chezar, H.; Hatcher, G.; ,

2007-01-01

This study presents a method for rapidly collecting, processing, and interrogating real-time abiotic and biotic seabed data to determine seabed habitat classifications. This is done from data collected over a large area of an acoustically derived seabed map, along multidirectional transects, using a towed small camera-sled. The seabed, within the newly designated Point Harris Marine Reserve on the northern coast of San Miguel Island, California, was acoustically imaged using sidescan sonar then ground-truthed using a towed small camera-sled. Seabed characterizations were made from video observations, and were logged to a laptop computer (PC) in real time. To ground-truth the acoustic mosaic, and to characterize abiotic and biotic aspects of the seabed, a three-tiered characterization scheme was employed that described the substratum type, physical structure (i.e., bedform or vertical relief), and the occurrence of benthic macrofauna and flora. A crucial advantage of the method described here, is that preliminary seabed characterizations can be interrogated and mapped over the sidescan mosaic and other seabed information within hours of data collection. This ability to rapidly process seabed data is invaluable to scientists and managers, particularly in modifying concurrent or planning subsequent surveys.

Diatoms and Other Epibionts Associated with Olive Ridley (Lepidochelys olivacea) Sea Turtles from the Pacific Coast of Costa Rica

PubMed Central

Majewska, Roksana; Santoro, Mario; Bolaños, Federico; Chaves, Gerardo; De Stefano, Mario

2015-01-01

Although the sea turtles have long been familiar and even iconic to marine biologists, many aspects of their ecology remain unaddressed. The present study is the first of the epizoic diatom community covering the olive ridley turtle’s (Lepidochelys olivacea) carapace and the first describing diatoms living on sea turtles in general, with the primary objective of providing detailed information on turtle epibiotic associations. Samples of turtle carapace including the associated diatom biofilm and epizoic macro-fauna were collected from Ostional beach (9° 59´ 23.7´´ N 85° 41´ 52.6´´ W), Costa Rica, during the arribada event in October 2013. A complex diatom community was present in every sample. In total, 11 macro-faunal and 21 diatom taxa were recorded. Amongst diatoms, the most numerous were erect (Achnanthes spp., Tripterion spp.) and motile (Haslea sp., Navicula spp., Nitzschia spp., Proschkinia sp.) forms, followed by adnate Amphora spp., while the most common macro-faunal species was Stomatolepas elegans (Cirripedia). Diatom densities ranged from 8179 ± 750 to 27685 ± 4885 cells mm-2. Epizoic microalgae were either partly immersed or entirely encapsulated within an exopolymeric coat. The relatively low diatom species number, stable species composition and low inter-sample dissimilarities (14.4% on average) may indicate a mutualistic relationship between the epibiont and the basibiont. Dispersal of sea turtle diatoms is probably highly restricted and similar studies will help to understand both diatom diversity, evolution and biogeography, and sea turtle ecology and foraging strategies. PMID:26083535

Assessing sandy beach macrofaunal patterns along large-scale environmental gradients: A Fuzzy Naïve Bayes approach

NASA Astrophysics Data System (ADS)

Bozzeda, Fabio; Zangrilli, Maria Paola; Defeo, Omar

2016-06-01

A Fuzzy Naïve Bayes (FNB) classifier was developed to assess large-scale variations in abundance, species richness and diversity of the macrofauna inhabiting fifteen Uruguayan sandy beaches affected by the effects of beach morphodynamics and the estuarine gradient generated by Rio de la Plata. Information from six beaches was used to estimate FNB parameters, while abiotic data of the remaining nine beaches were used to forecast abundance, species richness and diversity. FNB simulations reproduced the general increasing trend of target variables from inner estuarine reflective beaches to marine dissipative ones. The FNB model also identified a threshold value of salinity range beyond which diversity markedly increased towards marine beaches. Salinity range is suggested as an ecological master factor governing distributional patterns in sandy beach macrofauna. However, the model: 1) underestimated abundance and species richness at the innermost estuarine beach, with the lowest salinity, and 2) overestimated species richness in marine beaches with a reflective morphodynamic state, which is strongly linked to low abundance, species richness and diversity. Therefore, future modeling efforts should be refined by giving a dissimilar weigh to the gradients defined by estuarine (estuarine beaches) and morphodynamic (marine beaches) variables, which could improve predictions of target variables. Our modeling approach could be applied to a wide spectrum of issues, ranging from basic ecology to social-ecological systems. This approach seems relevant, given the current challenge to develop predictive methodologies to assess the simultaneous and nonlinear effects of anthropogenic and natural impacts in coastal ecosystems.

Detecting Subtle Shifts in Ecosystem Functioning in a Dynamic Estuarine Environment

PubMed Central

Pratt, Daniel R.; Lohrer, Andrew M.; Thrush, Simon F.; Hewitt, Judi E.; Townsend, Michael; Cartner, Katie; Pilditch, Conrad A.; Harris, Rachel J.; van Colen, Carl; Rodil, Iván F.

2015-01-01

Identifying the effects of stressors before they impact ecosystem functioning can be challenging in dynamic, heterogeneous ‘real-world’ ecosystems. In aquatic systems, for example, reductions in water clarity can limit the light available for photosynthesis, with knock-on consequences for secondary consumers, though in naturally turbid wave-swept estuaries, detecting the effects of elevated turbidity can be difficult. The objective of this study was to investigate the effects of shading on ecosystem functions mediated by sandflat primary producers (microphytobenthos) and deep-dwelling surface-feeding macrofauna (Macomona liliana; Bivalvia, Veneroida, Tellinidae). Shade cloths (which reduced incident light intensity by ~80%) were deployed on an exposed, intertidal sandflat to experimentally stress the microphytobenthic community associated with the sediment surface. After 13 weeks, sediment properties, macrofauna and fluxes of oxygen and inorganic nutrients across the sediment-water interface were measured. A multivariate metric of ecosystem function (MF) was generated by combining flux-based response variables, and distance-based linear models were used to determine shifts in the drivers of ecosystem function between non-shaded and shaded plots. No significant differences in MF or in the constituent ecosystem function variables were detected between the shaded and non-shaded plots. However, shading reduced the total explained variation in MF (from 64% in non-shaded plots to 15% in shaded plots) and affected the relative influence of M. liliana and other explanatory variables on MF. This suggests that although shade stress may shift the drivers of ecosystem functioning (consistent with earlier investigations of shading effects on sandflat interaction networks), ecosystem functions appear to have a degree of resilience to those changes. PMID:26214854

Taxonomic research on deep-sea macrofauna in the South China Sea using the Chinese deep-sea submersible Jiaolong.

PubMed

Li, Xinzheng

2017-07-01

This paper reviews the taxonomic and biodiversity studies of deep-sea invertebrates in the South China Sea based on the samples collected by the Chinese manned deep-sea submersible Jiaolong. To date, 6 new species have been described, including the sponges Lophophysema eversa, Saccocalyx microhexactin and Semperella jiaolongae as well as the crustaceans Uroptychus jiaolongae, Uroptychus spinulosus and Globospongicola jiaolongi; some newly recorded species from the South China Sea have also been reported. The Bathymodiolus platifrons-Shinkaia crosnieri deep-sea cold seep community has been reported by Li (2015), as has the mitochondrial genome of the glass sponge L. eversa by Zhang et al. (2016). The population structures of two dominant species, the shrimp Shinkaia crosnieri and the mussel Bathymodiolus platifrons, from the cold seep Bathymodiolus platifrons-Shinkaia crosnieri community in the South China Sea and the hydrothermal vents in the Okinawa Trough, were compared using molecular analysis. The systematic position of the shrimp genus Globospongicola was discussed based on 16S rRNA gene sequences. © 2017 International Society of Zoological Sciences, Institute of Zoology/Chinese Academy of Sciences and John Wiley & Sons Australia, Ltd.

Stable isotopes reveal habitat-related diet shifts in facultative deposit-feeders

NASA Astrophysics Data System (ADS)

Rossi, Francesca; Baeta, Alexandra; Marques, João C.

2015-01-01

Seagrass patches interspersed in a sediment matrix may vary environmental conditions and affect feeding habits of consumers and food-web structure. This paper investigates diet shifts between bare sediments and a Zostera noltei (Hornemann, 1832) meadow for three facultative deposit-feeding macrofaunal consumers, notably the bivalve Scrobicularia plana (da Costa, 1778), the polychaete Hediste diversicolor (O.T. Müller, 1776), and the gastropod Hydrobia ulvae (Pennant, 1778). In July 2008, one eelgrass meadow and two bare sediment locations were chosen in the Mondego estuary (40° 08″ N, 8° 50‧ W, Portugal) and sampled for stable isotope signatures (δ13C and δ15N) of macrofauna consumers and some of their potential basal food sources, such as sedimentary organic matter (SOM), microphytobenthos (MPB), seagrass shoots, leaves and seaweeds laying on the surface sediment. The δ15N of H. diversicolor was 3‰ higher in the eelgrass meadow than in bare sediment, indicating a change of trophic position, whereas the Bayesian stable-isotope mixing model showed that S. plana assimilated more macroalgal detritus than microphytobenthos in the eelgrass bed. Such habitat-related diet shifts have the potential to change structure and spatial dynamics of benthic food webs.

Ecological Evaluation of a Beach Nourishment Project at Hallandale (Broward County) Florida. Volume II. Evaluation of Benthic Communities Adjacent to a Restored Beach, Hallandale (Broward County), Florida.

DTIC Science & Technology

1980-03-01

TurbonitZa op. 2 Olivelta op. 1 2 Olivetta op. 2 1 Naticid sp. I I Gastropod sp. 2 1 2 Gastropod sp. 5 1 Gastropod sp. 6 1 17 Table 2. Species and...unique adaptations among the fauna inhabiting this zone. These organisms must either be able to migrate with the tides or be able to withstand exposure to...relatively few marine animals have been able to adapt to these conditions, the diversity of intertidal macrofauna is characteristically low, as indicated in

Exceptional discovery of a shallow-water hydrothermal site in the SW area of Basiluzzo islet (Aeolian archipelago, South Tyrrhenian Sea): An environment to preserve.

PubMed

Esposito, Valentina; Andaloro, Franco; Canese, Simonepietro; Bortoluzzi, Giovanni; Bo, Marzia; Di Bella, Marcella; Italiano, Francesco; Sabatino, Giuseppe; Battaglia, Pietro; Consoli, Pierpaolo; Giordano, Patrizia; Spagnoli, Federico; La Cono, Violetta; Yakimov, Michail M; Scotti, Gianfranco; Romeo, Teresa

2018-01-01

The geological, biological and geochemical features of a particular field of hydrothermal vents, discovered in the Panarea Volcanic Complex during a research survey carried out in 2015, are described for the first time. The site, located at 70-80 m depth off the South-western coast of the islet of Basiluzzo, was named Smoking Land for the presence of a large number of wide and high active chimneys and was characterized in terms of dissolved benthic fluxes, associated macrofauna and megafauna communities and preliminary mineralogy and geochemistry of chimney structures. On the whole field, a total of 39 chimneys, different in size and shape, were closely observed and described; 14 of them showed emission of low temperature hydrothermal fluids of marine origin characterized by acidified chemical conditions. The CTD and benthic chamber measurements highlighted that the Smoking Land is able to form a sea water bottom layer characterized by variable acidity and high DIC and trace elements concentrations; these characteristics weaken moving away from the chimney mouths. The SEM-EDS analysis of the collected solid samples revealed a chimney structure principally composed by amorphous and low crystalline Fe-oxyhydroxides of hydrothermal origins. The ROV explorations revealed a wide coverage of red algae (Peyssonnelia spp.) colonized by the green algae Flabiella petiolata and by suspension feeders, mainly sponges, but also bryozoans, and tubicolous polychaetes. Although novent-exclusive species were identified, the benthic communities found in association to the chimneys included more taxa than those observed in the surrounding no-vent rocky areas. These first findings evidence a submarine dynamic habitat where geological, chemical and biological processes are intimately connected, making the Smoking Land an important site in terms of marine heritage that should be safeguarded and protected.

Persistent impacts to the deep soft-bottom benthos one year after the Deepwater Horizon event.

PubMed

Montagna, Paul A; Baguley, Jeffrey G; Cooksey, Cynthia; Hyland, Jeffrey L

2017-03-01

In fall 2010, several months after the Deepwater Horizon blowout was capped, zones of moderate and severe impacts to deep-sea, soft-bottom benthos were identified that together extended over an area of 172 km 2 . A subset of stations sampled in 2010 was resampled in May and June 2011, 10 to 11 months after the event, to determine whether the identified adverse effects were persisting. The design compared 20 stations from the combined moderate and severe impact zone to 12 stations in the reference zone that were sampled in both years. There were no statistically significant differences in contaminant concentrations between the impact and nonimpact zones from 2010 to 2011, which indicates contaminants persisted after 1 y. Whereas there were some signs of recovery in 2011 (particularly for the meiofauna abundance and diversity), there was evidence of persistent, statistically significant impacts to both macrofauna and meiofauna community structure. Macrofaunal taxa richness and diversity in 2011 were still 22.8% and 35.9% less, respectively, in the entire impact zone than in the surrounding nonimpact area, and meiofaunal richness was 28.5% less in the entire impact zone than in the surrounding area. The persistence of significant biodiversity losses and community structure change nearly 1 y after the wellhead was capped indicates that full recovery had yet to have occurred in 2011. Integr Environ Assess Manag 2017;13:342-351. © 2016 SETAC. © 2016 SETAC.

Internal tides affect benthic community structure in an energetic submarine canyon off SW Taiwan

NASA Astrophysics Data System (ADS)

Liao, Jian-Xiang; Chen, Guan-Ming; Chiou, Ming-Da; Jan, Sen; Wei, Chih-Lin

2017-07-01

Submarine canyons are major conduits of terrestrial and shelf organic matter, potentially benefiting the seafloor communities in the food-deprived deep sea; however, strong bottom currents driven by internal tides and the potentially frequent turbidity currents triggered by storm surges, river flooding, and earthquakes may negatively impact the benthos. In this study, we investigated the upper Gaoping Submarine Canyon (GPSC), a high-sediment-yield canyon connected to a small mountain river (SMR) off southwest (SW) Taiwan. By contrasting the benthic meiofaunal and macrofaunal communities within and outside the GPSC, we examined how food supplies and disturbance influenced the benthic community assemblages. The benthic communities in the upper GPSC were mainly a nested subset of the adjacent slope assemblages. Several meiofaunal (e.g. ostracods) and macrofaunal taxa (e.g. peracarid crustaceans and mollusks) that typically occurred on the slope were lost from the canyon. The polychaete families switched from diverse feeding guilds on the slope to motile subsurface deposit feeders dominant in the canyon. The diminishing of epibenthic peracarids and proliferation of deep burrowing polychaetes in the GPSC resulted in macrofauna occurring largely within deeper sediment horizons in the canyon than on the slope. The densities and numbers of taxa were depressed with distinct and more variable composition in the canyon than on the adjacent slope. Both the densities and numbers of taxa were negatively influenced by internal tide flushing and positively influenced by food availability; however, the internal tides also negatively influenced the food supplies. While the meiofauna and macrofauna densities were both depressed by the extreme physical conditions in the GPSC, only the macrofaunal densities increased with depth in the canyon, presumably related to increased frequency and intensity of disturbance toward the canyon head. The population densities of meiofauna, on the other hand, rebounded more rapidly due to their fast growth rate and short generation time and thus did not display bathymetric pattern in the canyon. To our knowledge, this is the first benthic ecological study in a submarine canyon connected to a high-sediment-yield SMR. The biological responses to extreme physical conditions in the GPSC could have broad implications on understanding the anthropogenic and climate change impacts in the deep-sea ecosystems.

Large Spatial Scale Variability in Bathyal Macrobenthos Abundance, Biomass, α- and β-Diversity along the Mediterranean Continental Margin

PubMed Central

Baldrighi, Elisa; Lavaleye, Marc; Aliani, Stefano; Conversi, Alessandra; Manini, Elena

2014-01-01

The large-scale deep-sea biodiversity distribution of the benthic fauna was explored in the Mediterranean Sea, which can be seen as a miniature model of the oceans of the world. Within the framework of the BIOFUN project (“Biodiversity and Ecosystem Functioning in Contrasting Southern European Deep-sea Environments: from viruses to megafauna”), we investigated the large spatial scale variability (over >1,000 km) of the bathyal macrofauna communities that inhabit the Mediterranean basin, and their relationships with the environmental variables. The macrofauna abundance, biomass, community structure and functional diversity were analysed and the α-diversity and β-diversity were estimated across six selected slope areas at different longitudes and along three main depths. The macrobenthic standing stock and α-diversity were lower in the deep-sea sediments of the eastern Mediterranean basin, compared to the western and central basins. The macrofaunal standing stock and diversity decreased significantly from the upper bathyal to the lower bathyal slope stations. The major changes in the community composition of the higher taxa and in the trophic (functional) structure occurred at different longitudes, rather than at increasing water depth. For the β-diversity, very high dissimilarities emerged at all levels: (i) between basins; (ii) between slopes within the same basin; and (iii) between stations at different depths; this therefore demonstrates the high macrofaunal diversity of the Mediterranean basins at large spatial scales. Overall, the food sources (i.e., quantity and quality) that characterised the west, central and eastern Mediterranean basins, as well as sediment grain size, appear to influence the macrobenthic standing stock and the biodiversity along the different slope areas. PMID:25225909

Metal-Macrofauna Interactions Determine Microbial Community Structure and Function in Copper Contaminated Sediments

PubMed Central

Mayor, Daniel J.; Gray, Nia B.; Elver-Evans, Joanna; Midwood, Andrew J.; Thornton, Barry

2013-01-01

Copper is essential for healthy cellular functioning, but this heavy metal quickly becomes toxic when supply exceeds demand. Marine sediments receive widespread and increasing levels of copper contamination from antifouling paints owing to the 2008 global ban of organotin-based products. The toxicity of copper will increase in the coming years as seawater pH decreases and temperature increases. We used a factorial mesocosm experiment to investigate how increasing sediment copper concentrations and the presence of a cosmopolitan bioturbating amphipod, Corophium volutator, affected a range of ecosystem functions in a soft sediment microbial community. The effects of copper on benthic nutrient release, bacterial biomass, microbial community structure and the isotopic composition of individual microbial membrane [phospholipid] fatty acids (PLFAs) all differed in the presence of C. volutator. Our data consistently demonstrate that copper contamination of global waterways will have pervasive effects on the metabolic functioning of benthic communities that cannot be predicted from copper concentrations alone; impacts will depend upon the resident macrofauna and their capacity for bioturbation. This finding poses a major challenge for those attempting to manage the impacts of copper contamination on ecosystem services, e.g. carbon and nutrient cycling, across different habitats. Our work also highlights the paucity of information on the processes that result in isotopic fractionation in natural marine microbial communities. We conclude that the assimilative capacity of benthic microbes will become progressively impaired as copper concentrations increase. These effects will, to an extent, be mitigated by the presence of bioturbating animals and possibly other processes that increase the influx of oxygenated seawater into the sediments. Our findings support the move towards an ecosystem approach for environmental management. PMID:23741430

Large spatial scale variability in bathyal macrobenthos abundance, biomass, α- and β-diversity along the Mediterranean continental margin.

PubMed

Baldrighi, Elisa; Lavaleye, Marc; Aliani, Stefano; Conversi, Alessandra; Manini, Elena

2014-01-01

The large-scale deep-sea biodiversity distribution of the benthic fauna was explored in the Mediterranean Sea, which can be seen as a miniature model of the oceans of the world. Within the framework of the BIOFUN project ("Biodiversity and Ecosystem Functioning in Contrasting Southern European Deep-sea Environments: from viruses to megafauna"), we investigated the large spatial scale variability (over >1,000 km) of the bathyal macrofauna communities that inhabit the Mediterranean basin, and their relationships with the environmental variables. The macrofauna abundance, biomass, community structure and functional diversity were analysed and the α-diversity and β-diversity were estimated across six selected slope areas at different longitudes and along three main depths. The macrobenthic standing stock and α-diversity were lower in the deep-sea sediments of the eastern Mediterranean basin, compared to the western and central basins. The macrofaunal standing stock and diversity decreased significantly from the upper bathyal to the lower bathyal slope stations. The major changes in the community composition of the higher taxa and in the trophic (functional) structure occurred at different longitudes, rather than at increasing water depth. For the β-diversity, very high dissimilarities emerged at all levels: (i) between basins; (ii) between slopes within the same basin; and (iii) between stations at different depths; this therefore demonstrates the high macrofaunal diversity of the Mediterranean basins at large spatial scales. Overall, the food sources (i.e., quantity and quality) that characterised the west, central and eastern Mediterranean basins, as well as sediment grain size, appear to influence the macrobenthic standing stock and the biodiversity along the different slope areas.

Metal-macrofauna interactions determine microbial community structure and function in copper contaminated sediments.

PubMed

Mayor, Daniel J; Gray, Nia B; Elver-Evans, Joanna; Midwood, Andrew J; Thornton, Barry

2013-01-01

Copper is essential for healthy cellular functioning, but this heavy metal quickly becomes toxic when supply exceeds demand. Marine sediments receive widespread and increasing levels of copper contamination from antifouling paints owing to the 2008 global ban of organotin-based products. The toxicity of copper will increase in the coming years as seawater pH decreases and temperature increases. We used a factorial mesocosm experiment to investigate how increasing sediment copper concentrations and the presence of a cosmopolitan bioturbating amphipod, Corophium volutator, affected a range of ecosystem functions in a soft sediment microbial community. The effects of copper on benthic nutrient release, bacterial biomass, microbial community structure and the isotopic composition of individual microbial membrane [phospholipid] fatty acids (PLFAs) all differed in the presence of C. volutator. Our data consistently demonstrate that copper contamination of global waterways will have pervasive effects on the metabolic functioning of benthic communities that cannot be predicted from copper concentrations alone; impacts will depend upon the resident macrofauna and their capacity for bioturbation. This finding poses a major challenge for those attempting to manage the impacts of copper contamination on ecosystem services, e.g. carbon and nutrient cycling, across different habitats. Our work also highlights the paucity of information on the processes that result in isotopic fractionation in natural marine microbial communities. We conclude that the assimilative capacity of benthic microbes will become progressively impaired as copper concentrations increase. These effects will, to an extent, be mitigated by the presence of bioturbating animals and possibly other processes that increase the influx of oxygenated seawater into the sediments. Our findings support the move towards an ecosystem approach for environmental management.

Environmental change and predator diversity drive alpha and beta diversity in freshwater macro and microorganisms.

PubMed

Antiqueira, Pablo Augusto P; Petchey, Owen L; Dos Santos, Viviane Piccin; de Oliveira, Valéria Maia; Romero, Gustavo Quevedo

2018-05-17

Global biodiversity is eroding due to anthropogenic causes such as climate change, habitat loss, and trophic simplification of biological communities. Most studies address only isolated causes within a single group of organisms; however, biological groups of different trophic levels may respond in particular ways to different environmental impacts. Our study used natural microcosms to investigate the predicted individual and interactive effects of warming, changes in top predator diversity, and habitat size on the alpha and beta diversity of macrofauna, microfauna and bacteria. Alpha diversity (i.e., richness within each bromeliad) generally explained a larger proportion of the gamma diversity (partitioned in alpha and beta diversity). Overall, dissimilarity between communities occurred due to species turnover and not species loss (nestedness). Nevertheless, the three biological groups responded differently to each environmental stressor. Microfauna were the most sensitive group, with alpha and beta diversity being affected by environmental changes (warming and habitat size) and trophic structure (diversity of top predators). Macrofauna alpha and beta diversity was sensitive to changes in predator diversity and habitat size, but not warming. In contrast, the bacterial community was not influenced by the treatments. The community of each biological group was not mutually concordant with the environmental and trophic changes. Our results demonstrate that distinct anthropogenic impacts differentially affect the components of macro and microorganism diversity through direct and indirect effects (i.e., bottom-up and top-down effects). Therefore, a multitrophic and multispecies approach is necessary to assess the effects of different anthropogenic impacts on biodiversity. This article is protected by copyright. All rights reserved. This article is protected by copyright. All rights reserved.

Development of the concept of spatial-temporal mask for testing effects of discharge from well-drilling activities on biological communities.

PubMed

Pulgati, Fernando H; Ayup-Zouain, Ricardo N; Landau, Luiz; Fachel, Jandyra M G

2010-08-01

This paper describes the use of Bayesian spatial models to develop the concept of a spatial-temporal mask for the purpose of identifying regions in which before and after drilling effects are most clearly defined and from which the consequences of exposure of macrofauna and meiofauna to the release of drilling discharges can be evaluated over time. To determine the effects of drilling fluids and drill-cuttings on the marine benthic community, it is essential to know not only where discharged materials ended up within the possible impact area, but also the chemical concentrations to which biota were exposed during and after drilling. Barium and light hydrocarbons were used as chemical tracers for water-based and non-aqueous-based fluids in a shallow water site in the Campos Basin, off the coast of Brazil. Since the site showed evidence of exposure to waste material from earlier drilling, the analysis needed to take into account the background concentrations of these compounds. Using the Bayesian models, concentrations at unsampled sites were predicted and regions altered and previously contaminated were identified.

Diffuse flow environments within basalt- and sediment-based hydrothermal vent ecosystems harbor specialized microbial communities.

PubMed

Campbell, Barbara J; Polson, Shawn W; Zeigler Allen, Lisa; Williamson, Shannon J; Lee, Charles K; Wommack, K Eric; Cary, S Craig

2013-01-01

Hydrothermal vents differ both in surface input and subsurface geochemistry. The effects of these differences on their microbial communities are not clear. Here, we investigated both alpha and beta diversity of diffuse flow-associated microbial communities emanating from vents at a basalt-based hydrothermal system along the East Pacific Rise (EPR) and a sediment-based hydrothermal system, Guaymas Basin. Both Bacteria and Archaea were targeted using high throughput 16S rRNA gene pyrosequencing analyses. A unique aspect of this study was the use of a universal set of 16S rRNA gene primers to characterize total and diffuse flow-specific microbial communities from varied deep-sea hydrothermal environments. Both surrounding seawater and diffuse flow water samples contained large numbers of Marine Group I (MGI) Thaumarchaea and Gammaproteobacteria taxa previously observed in deep-sea systems. However, these taxa were geographically distinct and segregated according to type of spreading center. Diffuse flow microbial community profiles were highly differentiated. In particular, EPR dominant diffuse flow taxa were most closely associated with chemolithoautotrophs, and off axis water was dominated by heterotrophic-related taxa, whereas the opposite was true for Guaymas Basin. The diversity and richness of diffuse flow-specific microbial communities were strongly correlated to the relative abundance of Epsilonproteobacteria, proximity to macrofauna, and hydrothermal system type. Archaeal diversity was higher than or equivalent to bacterial diversity in about one third of the samples. Most diffuse flow-specific communities were dominated by OTUs associated with Epsilonproteobacteria, but many of the Guaymas Basin diffuse flow samples were dominated by either OTUs within the Planctomycetes or hyperthermophilic Archaea. This study emphasizes the unique microbial communities associated with geochemically and geographically distinct hydrothermal diffuse flow environments.

Diffuse flow environments within basalt- and sediment-based hydrothermal vent ecosystems harbor specialized microbial communities

PubMed Central

Campbell, Barbara J.; Polson, Shawn W.; Zeigler Allen, Lisa; Williamson, Shannon J.; Lee, Charles K.; Wommack, K. Eric; Cary, S. Craig

2013-01-01

Hydrothermal vents differ both in surface input and subsurface geochemistry. The effects of these differences on their microbial communities are not clear. Here, we investigated both alpha and beta diversity of diffuse flow-associated microbial communities emanating from vents at a basalt-based hydrothermal system along the East Pacific Rise (EPR) and a sediment-based hydrothermal system, Guaymas Basin. Both Bacteria and Archaea were targeted using high throughput 16S rRNA gene pyrosequencing analyses. A unique aspect of this study was the use of a universal set of 16S rRNA gene primers to characterize total and diffuse flow-specific microbial communities from varied deep-sea hydrothermal environments. Both surrounding seawater and diffuse flow water samples contained large numbers of Marine Group I (MGI) Thaumarchaea and Gammaproteobacteria taxa previously observed in deep-sea systems. However, these taxa were geographically distinct and segregated according to type of spreading center. Diffuse flow microbial community profiles were highly differentiated. In particular, EPR dominant diffuse flow taxa were most closely associated with chemolithoautotrophs, and off axis water was dominated by heterotrophic-related taxa, whereas the opposite was true for Guaymas Basin. The diversity and richness of diffuse flow-specific microbial communities were strongly correlated to the relative abundance of Epsilonproteobacteria, proximity to macrofauna, and hydrothermal system type. Archaeal diversity was higher than or equivalent to bacterial diversity in about one third of the samples. Most diffuse flow-specific communities were dominated by OTUs associated with Epsilonproteobacteria, but many of the Guaymas Basin diffuse flow samples were dominated by either OTUs within the Planctomycetes or hyperthermophilic Archaea. This study emphasizes the unique microbial communities associated with geochemically and geographically distinct hydrothermal diffuse flow environments. PMID:23898323

Arboreal ant colonies as 'hot-points' of cryptic diversity for myrmecophiles: the weaver ant Camponotus sp. aff. textor and its interaction network with its associates.

PubMed

Pérez-Lachaud, Gabriela; Lachaud, Jean-Paul

2014-01-01

Systematic surveys of macrofaunal diversity within ant colonies are lacking, particularly for ants nesting in microhabitats that are difficult to sample. Species associated with ants are generally small and rarely collected organisms, which makes them more likely to be unnoticed. We assumed that this tendency is greater for arthropod communities in microhabitats with low accessibility, such as those found in the nests of arboreal ants that may constitute a source of cryptic biodiversity. We investigated the invertebrate diversity associated with an undescribed, but already threatened, Neotropical Camponotus weaver ant. As most of the common sampling methods used in studies of ant diversity are not suited for evaluating myrmecophile diversity within ant nests, we evaluated the macrofauna within ant nests through exhaustive colony sampling of three nests and examination of more than 80,000 individuals. We identified invertebrates from three classes belonging to 18 taxa, some of which were new to science, and recorded the first instance of the co-occurrence of two brood parasitoid wasp families attacking the same ant host colony. This diversity of ant associates corresponded to a highly complex interaction network. Agonistic interactions prevailed, but the prevalence of myrmecophiles was remarkably low. Our data support the hypothesis of the evolution of low virulence in a variety of symbionts associated with large insect societies. Because most myrmecophiles found in this work are rare, strictly specific, and exhibit highly specialized biology, the risk of extinction for these hitherto unknown invertebrates and their natural enemies is high. The cryptic, far unappreciated diversity within arboreal ant nests in areas at high risk of habitat loss qualifies these nests as 'hot-points' of biodiversity that urgently require special attention as a component of conservation and management programs.

Linking geology and microbiology: inactive pockmarks affect sediment microbial community structure.

PubMed

Haverkamp, Thomas H A; Hammer, Øyvind; Jakobsen, Kjetill S

2014-01-01

Pockmarks are geological features that are found on the bottom of lakes and oceans all over the globe. Some are active, seeping oil or methane, while others are inactive. Active pockmarks are well studied since they harbor specialized microbial communities that proliferate on the seeping compounds. Such communities are not found in inactive pockmarks. Interestingly, inactive pockmarks are known to have different macrofaunal communities compared to the surrounding sediments. It is undetermined what the microbial composition of inactive pockmarks is and if it shows a similar pattern as the macrofauna. The Norwegian Oslofjord contains many inactive pockmarks and they are well suited to study the influence of these geological features on the microbial community in the sediment. Here we present a detailed analysis of the microbial communities found in three inactive pockmarks and two control samples at two core depth intervals. The communities were analyzed using high-throughput amplicon sequencing of the 16S rRNA V3 region. Microbial communities of surface pockmark sediments were indistinguishable from communities found in the surrounding seabed. In contrast, pockmark communities at 40 cm sediment depth had a significantly different community structure from normal sediments at the same depth. Statistical analysis of chemical variables indicated significant differences in the concentrations of total carbon and non-particulate organic carbon between 40 cm pockmarks and reference sample sediments. We discuss these results in comparison with the taxonomic classification of the OTUs identified in our samples. Our results indicate that microbial communities at the sediment surface are affected by the water column, while the deeper (40 cm) sediment communities are affected by local conditions within the sediment.

Trace metals, PCBs, and PAHs in benthic (epipelic) diatoms from intertidal sediments; a pilot study

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stronkhorst, J.; Misdorp, R.; Vos, P.C.

1994-06-01

Intertidal sediments in many estuaries around the world have a history of contamination resulting from long term discharges of industrial, agricultural and domestic waste effluents. These contaminated sediments are now regarded as a major source of toxicants for bottom-related organisms which, in turn, may pass on certain contaminants (e.g. methylmercury, polychlorinated biphenyls (PCBs)) to organisms higher in the foodchain. Many studies have been conducted on the contamination of benthic macrofauna, estuarine fish and birds, but to our knowledge no research has yet been carried out on benthic diatoms which form the lowest trophic level of an intertidal ecosystem. Research onmore » the effects of micro-contaminants on primary producers in marine ecosystems is mainly performed with phytoplankton. In the estuaries of temperate regions, benthic diatoms make a significant contribution to primary production in the ecosystem and are predated especially by deposit feeding Polychaete and Mollusca. Knowledge of the level of contamination in benthic diatoms is of major importance to recognize possible effects on growth rate and species composition of the benthic diatom populations and to understand the accumulation of toxicants into the foodchain. For chemical analysis it is difficult to obtain [open quote]pure[close quote] samples of benthic diatoms because they form part of the sediment. A similar problem occurs with the sampling of phytoplankton in turbid estuarine waters. The aim of this pilot study was (a) to improve a trap technique to collect pure samples of benthic diatoms of at least 2 gram dry weight for analysis of trace metals, PCBs and polyaromatic hydrocarbons (PAHs) and (b) to compare the concentrations in benthic diatoms with levels in sediment and some bottom-related organisms. 16 refs., 2 figs., 2 tabs.« less

Differences in Intertidal Microbial Assemblages on Urban Structures and Natural Rocky Reef

PubMed Central

Tan, Elisa L.-Y.; Mayer-Pinto, Mariana; Johnston, Emma L.; Dafforn, Katherine A.

2015-01-01

Global seascapes are increasingly modified to support high levels of human activity in the coastal zone. Modifications include the addition of defense structures and boating infrastructure, such as seawalls and marinas that replace natural habitats. Artificial structures support different macrofaunal communities to those found on natural rocky shores; however, little is known about differences in microbial community structure or function in urban seascapes. Understanding how artificial constructions in marine environments influence microbial communities is important as these assemblages contribute to many basic ecological processes. In this study, the bacterial communities of intertidal biofilms were compared between artificial structures (seawalls) and natural habitats (rocky shores) within Sydney Harbour. Plots were cleared on each type of habitat at eight locations. After 3 weeks the newly formed biofilm was sampled and the 16S rRNA gene sequenced using the Illumina Miseq platform. To account for differences in orientation and substrate material between seawalls and rocky shores that might have influenced our survey, we also deployed recruitment blocks next to the habitats at all locations for 3 weeks and then sampled and sequenced their microbial communities. Intertidal bacterial community structure sampled from plots differed between seawalls and rocky shores, but when substrate material, age and orientation were kept constant (with recruitment blocks) then bacterial communities were similar in composition and structure among habitats. This suggests that changes in bacterial communities on seawalls are not related to environmental differences between locations, but may be related to other intrinsic factors that differ between the habitats such as orientation, complexity, or predation. This is one of the first comparisons of intertidal microbial communities on natural and artificial surfaces and illustrates substantial ecological differences with potential consequences for biofilm function and the recruitment of macrofauna. PMID:26635747

Climate change effects on macrofaunal litter decomposition: the interplay of temperature, body masses and stoichiometry.

PubMed

Ott, David; Rall, Björn C; Brose, Ulrich

2012-11-05

Macrofauna invertebrates of forest floors provide important functions in the decomposition process of soil organic matter, which is affected by the nutrient stoichiometry of the leaf litter. Climate change effects on forest ecosystems include warming and decreasing litter quality (e.g. higher C : nutrient ratios) induced by higher atmospheric CO(2) concentrations. While litter-bag experiments unravelled separate effects, a mechanistic understanding of how interactions between temperature and litter stoichiometry are driving decomposition rates is lacking. In a laboratory experiment, we filled this void by quantifying decomposer consumption rates analogous to predator-prey functional responses that include the mechanistic parameters handling time and attack rate. Systematically, we varied the body masses of isopods, the environmental temperature and the resource between poor (hornbeam) and good quality (ash). We found that attack rates increased and handling times decreased (i) with body masses and (ii) temperature. Interestingly, these relationships interacted with litter quality: small isopods possibly avoided the poorer resource, whereas large isopods exhibited increased, compensatory feeding of the poorer resource, which may be explained by their higher metabolic demands. The combination of metabolic theory and ecological stoichiometry provided critically important mechanistic insights into how warming and varying litter quality may modify macrofaunal decomposition rates.

Spatial diversity of rocky midlittoral macro-invertebrates associated with the endangered species Patella ferruginea (Mollusca: Gastropoda) of Tunisian coastline

NASA Astrophysics Data System (ADS)

Tlig-Zouari, Sabiha; Rabaoui, Lotfi; Fguiri, Hosni; Diawara, Moctar; Ben Hassine, Oum Kalthoum

2010-04-01

The present study focuses on horizontal spatial variability of benthic macrofauna associated with Patella ferruginea. Thirty-six samples collected at 12 transects belonging to 4 midlittoral sites along the rocky Tunisian coastline, were examined. A total of 44 species belonging to 5 taxa were found. Multivariate analysis applied on gathered data did not show a horizontal spatial variability at small scale (between transects), but at large scale, between sites as well as sectors. Thus, three groups of communities were identified (GI: Korbous and El Haouaria; GIIa: Zembra Island and GIIb: Kelibia). The distribution of species abundance within these groups revealed that crustaceans were the most abundant taxon, due to the overwhelming dominance of Chthamalus stellatus. This substratum appeared to create favourable micro-habitats for the installation of molluscs including gastropods. Regarding the low diversity index ( H') and evenness ( J), they seemed to reflect a disturbance and a demographic unbalance within these communities. The heterogeneity of substrate surface, created by C. stellatus specimens appeared to be caused by various complex interactions established between the key components of these communities in particular suspension feeders, predators, herbivorous molluscs and macroalgae. Thus, the dynamic status of each of these communities is the result of these complex interactions.

Relations Between the Structure of Benthic Macro-Invertebrates and the Composition of Adult Water Beetle Diets from the Dytiscidae Family.

PubMed

Frelik, Anna; Pakulnicka, Joanna

2015-10-01

This paper investigates the relations between the diet structure of predaceous adult water beetles from the Dytiscidae family and the structure of macrofauna inhabiting the same environments. The field studies were carried out from April until September in 2012 and 2013 in 1-mo intervals. In total, >1,000 water beetles and 5,115 benthic macro-invertebrates were collected during the whole period of the study. Subsequently, 784 specimens of adult water beetles (70.6% out of the total sampled) with benthic macro-invertebrates found in their proventriculi, were subject to analysis. The predators were divided into three categories depending on their body size: small beetles (2.3-5.0 mm), medium-sized beetles (13-15 mm), and large beetles (27-37 mm). All adult Dytiscidae consumed primarily Ephemeroptera and Chironomidae larvae. Although Asellidae were numerically dominant inhabitants of the sites, the adult water beetles did not feed on them. The analysis of feeding relations between predators and their prey revealed that abundance of Ephemeroptera, Chironomidae, and larval Dytiscidae between the environment and the diet of adult Dytiscidae were strongly correlated. © The Authors 2015. Published by Oxford University Press on behalf of Entomological Society of America. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Effects of tidal inundation on benthic macrofauna associated with the eelgrass Zostera muelleri

NASA Astrophysics Data System (ADS)

Nicastro, Andrea; Bishop, Melanie J.

2013-01-01

Processes, such as sea level rise, that alter tidal inundation regimes have the potential to modify the structure of seagrasses and their dense and diverse faunal communities. This study tested the hypothesis that seagrass-dwelling invertebrate communities would vary across a tidal inundation gradient as a result of direct effects of tidal inundation and indirect effects, arising from changes in seagrass morphology across this gradient. First, we conducted mensurative sampling across tidal inundation gradients to assess how above- and below-ground seagrass biomass, and epi- and infaunal invertebrate communities co-varied with depth. Second, we ran a manipulative field experiment, utilising artificial seagrass rhizomes of varying morphologies, to separate out direct effects of tidal inundation on infaunal communities from indirect effects arising from changes in seagrass root morphology. Mensurative sampling revealed that the abundance and taxon richness of seagrass epi- and infauna, and the above- and below-ground biomass of seagrass each increased with depth across a tidal elevation gradient extending from the high intertidal to the shallow subtidal. The manipulative experiment revealed that the relative importance of direct and indirect effects of tidal inundation in determining the distribution and abundance of infauna were taxon-specific. In general, however, the facilitative effects of rhizome structure were more evident at the intertidal compared to the subtidal elevation. Our results indicate that changes to tidal inundation regime will affect seagrass-dwelling macroinvertebrates through a combination of direct and indirect effects. Therefore, future changes in tidal inundation should be taken into account in developing conservation plans for protecting seagrasses and the biodiversity they sustain.

Differences in recovery between deep-sea hydrothermal vent and vent-proximate communities after a volcanic eruption

NASA Astrophysics Data System (ADS)

Gollner, Sabine; Govenar, Breea; Arbizu, Pedro Martinez; Mills, Susan; Le Bris, Nadine; Weinbauer, Markus; Shank, Timothy M.; Bright, Monika

2015-12-01

Deep-sea hydrothermal vents and the surrounding basalt seafloor are subject to major natural disturbance events such as volcanic eruptions. In the near future, anthropogenic disturbance in the form of deep-sea mining could also significantly affect the faunal communities of hydrothermal vents. In this study, we monitor and compare the recovery of insular, highly productive vent communities and vent-proximate basalt communities following a volcanic eruption that destroyed almost all existing communities at the East Pacific Rise, 9°50‧N in 2006. To study the recovery patterns of the benthic communities, we placed settlement substrates at vent sites and their proximate basalt areas and measured the prokaryotic abundance and compared the meio- and macrofaunal species richness and composition at one, two and four years after the eruption. In addition, we collected samples from the overlying water column with a pelagic pump, at one and two years after the volcanic eruption, to determine the abundance of potential meiofauna colonisers. One year after eruption, mean meio- and macrofaunal abundances were not significantly different from pre-eruption values in vent habitats (meio: 8-1838 ind. 64 cm-2 in 2006; 3-6246 ind. 64 cm-2 in 2001/02; macro: 95-1600 ind. 64 cm-2 in 2006; 205-4577 ind. 64 cm-2 in 2001/02) and on non-vent basalt habitats (meio: 10-1922 ind. 64 cm-2 in 2006; 8-328 ind. 64 cm-2 in 2003/04; macro: 14-3351 ind. 64 cm-2 in 2006; 2-63 ind. 64 cm-2 in 2003/04), but species recovery patterns differed between the two habitat types. In the vent habitat, the initial community recovery was relatively quick but incomplete four years after eruption, which may be due to the good dispersal capabilities of vent endemic macrofauna and vent endemic dirivultid copepods. At vents, 42% of the pre-eruption meio- and 39% of macrofaunal species had returned. In addition, some new species not evident prior to the eruption were found. At the tubeworm site Tica, a total of 26 meio- and 19 macrofaunal species were found in 2009, which contrasts with the 24 meio- and 29 macrofauna species detected at the site in 2001/02. In the basalt habitat, community recovery of meiofauna was slower with only 28% of the original 64 species present four years after eruption. The more limited dispersal capabilities of meiofauna basalt specialists such as nematodes or harpacticoid copepods probably caused this pattern. In contrast, 67% of the original 27 macrofaunal species had recolonized the basalt by 2009. Our results suggest that not only vent communities, but also species-rich communities of vent-proximate habitats require attention in conservation efforts.

Effect of hypoxia and anoxia on invertebrate behaviour: ecological perspectives from species to community level

NASA Astrophysics Data System (ADS)

Riedel, B.; Pados, T.; Pretterebner, K.; Schiemer, L.; Steckbauer, A.; Haselmair, A.; Zuschin, M.; Stachowitsch, M.

2014-03-01

Coastal hypoxia and anoxia have become a global key stressor to marine ecosystems, with almost 500 dead zones recorded worldwide. By triggering cascading effects from the individual organism to the community- and ecosystem level, oxygen depletions threaten marine biodiversity and can alter ecosystem structure and function. By integrating both physiological function and ecological processes, animal behaviour is ideal for assessing the stress state of benthic macrofauna to low dissolved oxygen. The initial response of organisms can serve as an early warning signal, while the successive behavioural reactions of key species indicate hypoxia levels and help assess community degradation. Here we document the behavioural responses of a representative spectrum of benthic macrofauna in the natural setting in the Northern Adriatic Sea (Mediterranean). We experimentally induced small-scale anoxia with a benthic chamber in 24 m depth to overcome the difficulties in predicting the onset of hypoxia, which often hinders full documentation in the field. The behavioural reactions were documented with a time-lapse camera. Oxygen depletion elicited significant and repeatable changes in general (visibility, locomotion, body movement and posture, location) and species-specific reactions in virtually all organisms (302 individuals from 32 species and 2 species groups). Most atypical (stress) behaviours were associated with specific oxygen thresholds: arm-tipping in the ophiuroid Ophiothrix quinquemaculata, for example, with the onset of mild hypoxia (< 2 mL O2 L-1), the emergence of polychaetes on the sediment surface with moderate hypoxia (< 1 mL O2 L-1), the emergence of the infaunal sea urchin Schizaster canaliferus on the sediment with severe hypoxia (< 0.5 mL O2 L-1) and heavy body rotations in sea anemones with anoxia. Other species changed their activity patterns, for example the circadian rhythm in the hermit crab Paguristes eremita or the bioherm-associated crab Pisidia longimana. Intra- and interspecific reactions were weakened or changed: decapods ceased defensive and territorial behaviour, and predator-prey interactions and relationships shifted. This nuanced scale of resolution is a useful tool to interpret present benthic community status (behaviour) and past mortalities (community composition, e.g. survival of tolerant species). This information on the sensitivity (onset of stress response), tolerance (mortality, survival), and characteristics (i.e. life habit, functional role) of key species also helps predict potential future changes in benthic structure and ecosystem functioning. This integrated approach can transport complex ecological processes to the public and decision-makers and help define specific monitoring, assessment and conservation plans.

Effect of hypoxia and anoxia on invertebrate behaviour: ecological perspectives from species to community level

NASA Astrophysics Data System (ADS)

Riedel, B.; Pados, T.; Pretterebner, K.; Schiemer, L.; Steckbauer, A.; Haselmair, A.; Zuschin, M.; Stachowitsch, M.

2013-08-01

Coastal hypoxia and anoxia have become a global key stressor to marine ecosystems, with almost 500 dead zones recorded wordwide. By triggering cascading effects from the individual organism to the community and ecosystem-level, oxygen depletions threat marine biodiversity and can alter ecosystem structure and function. By integrating both physiological function and ecological processes, animal behaviour is ideal for assessing the stress state of benthic macrofauna to low dissolved oxygen. The initial response of organisms can serve as an early-warning signal, while the successive behavioural reactions of key species indicate hypoxia levels and help assess community degradation. Here we document the behavioural responses of a representative spectrum of benthic macrofauna in the natural setting in the Northern Adriatic Sea, Mediterranean. We experimentally induced small-scale anoxia with a benthic chamber in 24 m depth to overcome the difficulties in predicting the onset of hypoxia, which often hinders full documentation in the field. The behavioural reactions were documented with a time-lapse camera. Oxygen depletion elicited significant and repeatable changes in general (visibility, locomotion, body movement and posture, location) and species-specific reactions in virtually all organisms (302 individuals from 32 species and 2 species groups). Most atypical (stress) behaviours were associated with specific oxygen thresholds: arm-tipping in the ophiuroid Ophiothrix quinquemaculata, for example, with the onset of mild hypoxia (< 2 mL O2 L-1), the emergence of polychates on the sediment surface with moderate hypoxia (< 1 mL O2 L-1), the emergence of the infaunal sea urchin Schizaster canaliferus on the sediment with severe hypoxia (< 0.5 mL O2 L-1) and heavy body rotations in sea anemones with anoxia. Other species changed their activity patterns, i.e. circadian rhythm in the hermit crab Paguristes eremita or the bioherm-associated crab Pisidia longimana. Intra- and interspecific reactions were weakened or changed: decapods ceased defensive and territorial behaviour, and predator-prey interactions and relationships shifted. This nuanced scale of resolution is a useful tool to interpret present benthic community status (behaviour) and past mortalities (community composition, e.g. survival of tolerant species). This information on the sensitivity (onset of stress response), tolerance (mortality, survival), and characteristics (i.e. life habit, functional role) of key species also helps predict potential future changes in benthic structure and ecosystem functioning. This integrated approach can transport complex ecological processes to the public and decision-makers and help define specific monitoring, assessment and conservation plans.

Global diversity patterns in sandy beach macrofauna: a biogeographic analysis.

PubMed

Barboza, Francisco Rafael; Defeo, Omar

2015-09-28

Unlike the advances generated on land, the knowledge of global diversity patterns in marine ecosystems is limited to a small number of studies. For sandy beaches, which dominate the world's ocean shores, previous meta-analyses highlighted the role of beach morphodynamics in explaining species richness patterns. Oceanographic variables and historical processes have not been considered, even though they could be main predictors of community structure. Our work, based on 256 sandy beaches around the world, analysed species richness considering for the first time temperature, salinity and primary productivity. Biogeographic units (realms, provinces and ecoregions) were used to incorporate historical factors in modelling processes. Ecoregions, which implicitly include isolation and coastal complexity among other historical geographic factors, best represented trends in species richness worldwide. Temperature was a main predictor of species richness, which increased from temperate to tropical sandy beaches. Species richness increased with tide range and towards wide beaches with gentle slopes and fine grains, which is consistent with the hypothesis that habitat availability has an important role in structuring sandy beach communities. The role of temperature and habitat availability suggests that ocean warming and sea level rise could affect the distribution of obligate species living in these narrow ecosystems.

Global diversity patterns in sandy beach macrofauna: a biogeographic analysis

PubMed Central

Rafael Barboza, Francisco; Defeo, Omar

2015-01-01

Unlike the advances generated on land, the knowledge of global diversity patterns in marine ecosystems is limited to a small number of studies. For sandy beaches, which dominate the world’s ocean shores, previous meta-analyses highlighted the role of beach morphodynamics in explaining species richness patterns. Oceanographic variables and historical processes have not been considered, even though they could be main predictors of community structure. Our work, based on 256 sandy beaches around the world, analysed species richness considering for the first time temperature, salinity and primary productivity. Biogeographic units (realms, provinces and ecoregions) were used to incorporate historical factors in modelling processes. Ecoregions, which implicitly include isolation and coastal complexity among other historical geographic factors, best represented trends in species richness worldwide. Temperature was a main predictor of species richness, which increased from temperate to tropical sandy beaches. Species richness increased with tide range and towards wide beaches with gentle slopes and fine grains, which is consistent with the hypothesis that habitat availability has an important role in structuring sandy beach communities. The role of temperature and habitat availability suggests that ocean warming and sea level rise could affect the distribution of obligate species living in these narrow ecosystems. PMID:26411697

The benthic macrofauna from the Lower Maastrichtian chalk of Kronsmoor (northern Germany, Saturn quarry): taxonomic outline and palaeoecologic implications

NASA Astrophysics Data System (ADS)

Engelke, Julia; Esser, Klaus J. K.; Linnert, Christian; Mutterlose, Jörg; Wilmsen, Markus

2016-12-01

The benthic macroinvertebrates of the Lower Maastrichtian chalk of Saturn quarry at Kronsmoor (northern Germany) have been studied taxonomically based on more than 1,000 specimens. Two successive benthic macrofossil assemblages were recognised: the lower interval in the upper part of the Kronsmoor Formation (Belemnella obtusa Zone) is characterized by low abundances of macroinvertebrates while the upper interval in the uppermost Kronsmoor and lowermost Hemmoor formations (lower to middle Belemnella sumensis Zone) shows a high macroinvertebrate abundance (eight times more than in the B. obtusa Zone) and a conspicuous dominance of brachiopods. The palaeoecological analysis of these two assemblages indicates the presence of eight different guilds, of which epifaunal suspension feeders (fixo-sessile and libero-sessile guilds), comprising approximately half of the trophic nucleus of the lower interval, increased to a dominant 86% in the upper interval, including a considerable proportion of rhynchonelliform brachiopods. It is tempting to relate this shift from the lower to the upper interval to an increase in nutrient supply and/or a shallowing of the depositional environment but further data including geochemical proxies are needed to fully understand the macrofossil distribution patterns in the Lower Maastrichtian of Kronsmoor.

Examining early-diagenetic processes as a chief sink for carbonate in the aftermath of the Triassic-Jurassic crisis: Hettangian concretions of Muller Canyon, NV, USA

NASA Astrophysics Data System (ADS)

Ritterbush, K. A.; Loyd, S. J.; Corsetti, F. A.; Bottjer, D. J.; Berelson, W.

2015-12-01

Tectonic, climate, and biotic changes across the Triassic-Jurassic transition appear to have resulted in a "carbonate gap" in the rock record of many shallow marine environments. Ecological state changes documented in near-shore settings in both Tethys and Panthassa show an earliest Jurassic switch to sponge-dominated biosiliceous sedimentation regimes. The Sunrise Formation exposed in the Gabbs Valley Range of Nevada (USA) records a peculiar juxtaposition of Hettangian carbonate-rich strata that contain demosponge spicules as the primary bioclast. It is unclear 1) why biocalcifiers were not recorded in higher abundance in this near-shore back-arc basin setting; 2) why carbonates formed following a biosiliceous regime; and 3) what the lithology indicates about post-extinction marine geochemical dynamics. Detailed sedimentological, paleontological, and geochemical analyses were applied to a 20-m thick sequence of limestone and chert in the Muller Canyon area, which is the Auxiliary Stratotype for the Triassic/Jurassic boundary. Concretion anatomy, bioclast microfacies, and oxygen and carbon isotopic signatures all indicate the Hettangian limestones are chiefly diagenetic concretions that all formed very shallowly, some essentially at the sediment-water interface. We infer that local bottom waters and/or pore waters were supersaturated with respect to calcium carbonate and that this contributed to widespread concretion sedimentation independent of biomineralization. Ecological incumbency of the demosponge meadows may have been supported by concurrent augmentation of marine silica concentration and this apparently proved inhospitable to re-colonization of benthic biocalcifying macrofauna. Together the biotic and lithologic consequences of the extinction represent million-year scale ecological restructuring and highlight early diagenetic precipitation as a major sink in long-term regional carbonate cycling. Perhaps the widespread 'carbonate gap' is actually a gap in calcifying macrofauna and the ocean managed to dump alkalinity as diagenetic carbonate.

Food-web structure of seep sediment macrobenthos from the Gulf of Mexico

NASA Astrophysics Data System (ADS)

Demopoulos, Amanda W. J.; Gualtieri, Daniel; Kovacs, Kaitlin

2010-11-01

The slope environment of the Gulf of Mexico (GOM) supports dense communities of seep megafaunal invertebrates that rely on endosymbiotic bacteria for nutrition. Seep sediments also contain smaller macrofaunal invertebrates whose nutritional pathways are not well understood. Using stable-isotope analysis, we investigate the utilization of chemosynthetically fixed and methane-derived organic matter by macrofauna. Biological sampling was conducted in three lower-slope GOM seep environs: Green Canyon (GC852, 1428 m), Atwater Valley (AT340, 2230 m), and Alaminos Canyon (AC601, 2384 m). Infaunal δ13C and δ15N exhibited a broad range of values; most infauna appeared to be heterotrophic, although several taxa had very light δ15N and δ13C values, indicating possible reliance on chemoautotrophic symbioses. The lightest δ13C and δ15N values were observed in nematodes (δ13C=-54.6±0.1‰, δ15N=-6.1±0.2‰) and one gastropod (δ13C=-54.1‰, δ15N=-1.1‰) from Green Canyon. Mixing-model results indicated that sulfur-oxidizing Beggiatoa may be an important food source for seep infauna; the rate of utilization ranged from 60% to 100% at Green Canyon and Atwater Valley. The overall range in isotope values was similar across the three sites, suggesting that biogeochemical processes may be very similar in these geographically distinct areas.

Distribution, abundance and productivity of benthic invertebrates at the Berg River estuary, South Africa

NASA Astrophysics Data System (ADS)

Kalejta, B.; Hockey, P. A. R.

1991-08-01

Twenty-five benthic invertebrate species were identified from samples taken monthly over 17 months at four sites on the Berg River estuary, South Africa. Gastropods and polychaetes dominated the macrofauna in terms of both numbers and biomass. Abundance of the dominant species fluctuated in response to seasonal growth of eelgrass Zostera capensis and filamentous alga Cladophora sp. Differences in distributions of invertebrates on the estuary were attributed to differences in physical properties of the substratum and in vegetation cover. Hydrobia sp., Ceratonereis erythraeensis and C. keiskama were the most important species in terms of biomass and accounted for an average of 75% of total biomass at all study sites. Biomass peaked during the austral winter, early spring and again in autumn. An increase in biomass in winter was due to somatic production, whereas spring and autumn increases were attributed to recruitment of juveniles following reproduction. Mean annual biomass for the whole estuary was 19·36 g m -2, and mean annual production 87·58 g m -2 year -1, yielding a net P/B ratio of 4·52. Production and P/B ratios of invertebrates in estuaries and coastal lagoons at temperate and subtropical latitudes were positively correlated with mean annual ambient temperature and negatively with distance from the equator. Production data are lacking from tropical estuaries.

Effects of wave energy converters on the surrounding soft-bottom macrofauna (west coast of Sweden).

PubMed

Langhamer, O

2010-06-01

Offshore wave energy conversion is expected to develop, thus contributing to an increase in submerged constructions on the seabed. An essential concern related to the deployment of wave energy converters (WECs) is their possible impact on the surrounding soft-bottom habitats. In this study, the macrofaunal assemblages in the seabed around the wave energy converters in the Lysekil research site on the Swedish west coast and a neighbouring reference site were examined yearly during a period of 5 years (2004-2008). Macrobenthic communities living in the WECs' surrounding seabed were mainly composed by organisms typical for the area and depth off the Swedish west coast. At both sites the number of individuals, number of species and biodiversity were low, and were mostly small, juvenile organisms. The species assemblages during the first years of sampling were significantly different between the Lysekil research site and the nearby reference site with higher species abundance in the research site. The high contribution to dissimilarities was mostly due to polychaetes. Sparse macrofaunal densities can be explained by strong hydrodynamic forces and/or earlier trawling. WECs may alter the surrounding seabed with an accumulation of organic matter inside the research area. This indicates that the deployment of WECs in the Lysekil research site tends to have rather minor direct ecological impacts on the surrounding benthic community relative to the natural high variances.

Geology and biology of the "Sticky Grounds", shelf-margin carbonate mounds, and mesophotic ecosystem in the eastern Gulf of Mexico

NASA Astrophysics Data System (ADS)

Locker, Stanley D.; Reed, John K.; Farrington, Stephanie; Harter, Stacey; Hine, Albert C.; Dunn, Shane

2016-08-01

Shelf-margin carbonate mounds in water depths of 116-135 m in the eastern Gulf of Mexico along the central west Florida shelf were investigated using swath bathymetry, side-scan sonar, sub-bottom imaging, rock dredging, and submersible dives. These enigmatic structures, known to fisherman as the "Sticky Grounds", trend along slope, are 5-15 m in relief with base diameters of 5-30 m, and suggest widespread potential for mesophotic reef habitat along the west Florida outer continental shelf. Possible origins are sea-level lowstand coral patch reefs, oyster reefs, or perhaps more recent post-lowstand biohermal development. Rock dredging recovered bioeroded carbonate-rock facies comprised of bored and cemented bioclastics. Rock sample components included calcified worm tubes, pelagic sediment, and oysters normally restricted to brackish nearshore areas. Several reef sites were surveyed at the Sticky Grounds during a cruise in August 2010 with the R/V Seward Johnson using the Johnson-Sea-Link II submersible to ground truth the swath-sonar maps and to quantify and characterize the benthic habitats, benthic macrofauna, fish populations, and coral/sponge cover. This study characterizes for the first time this mesophotic reef ecosystem and associated fish populations, and analyzes the interrelationships of the fish assemblages, benthic habitats and invertebrate biota. These highly eroded rock mounds provide extensive hard-bottom habitat for reef invertebrate species as well as essential fish habitat for reef fish and commercially/recreationally important fish species. The extent and significance of associated living resources with these bottom types is particularly important in light of the 2010 Deepwater Horizon oil spill in the northeastern Gulf and the proximity of the Loop Current. Mapping the distribution of these mesophotic-depth ecosystems is important for quantifying essential fish habitat and describing benthic resources. These activities can improve ecosystem management and planning of future oil and gas activities in this outer continental shelf region.

Benthic Community Structure and Sediment Geochemical Properties at Hydrocarbon Seeps Along the Continental Slope of the Western North Atlantic

NASA Astrophysics Data System (ADS)

Demopoulos, A. W.; Bourque, J. R.; Brooke, S.

2015-12-01

Hydrocarbon seeps support distinct benthic communities capable of utilizing reduced chemical compounds for nutrition. In recent years, methane seepage has been increasingly documented along the continental slope of the U.S. Atlantic margin. In 2012 and 2013, two seeps were investigated in this region: a shallow site near Baltimore Canyon (410-450 m) and a deep site near Norfolk Canyon (1600 m). Both sites contain extensive mussel beds and microbial mats. Sediment cores and grab samples were collected to quantify the abundance, diversity, and community structure of benthic macrofauna (>300 mm) in relationship to the associated sediment environment (organic carbon and nitrogen, stable isotopes 13C and 15N, grain size, and depth) of mussel beds, mats, and slope habitats. Macrofaunal densities in microbial mats were four times greater than those present in mussel beds and slope sediments. Macrofaunal communities were distinctly different both between depths and among habitat types. Specifically, microbial mat sediments were dominated by the annelid families Dorvilleidae, Capitellidae, and Tubificidae, while mussel habitats had higher proportions of crustaceans. Diversity was lower in Baltimore microbial mat habitats, but higher in mussel and slope sediments compared to Norfolk seep habitats found at deeper depths. Multivariate statistical analysis identified sediment carbon:nitrogen (C:N) ratios and 13C values as important variables for structuring the macrofaunal communities. Higher C:N ratios were present within microbial mat habitats and depleted 13C values occurred in sediments adjacent to mussel beds found in Norfolk Canyon seeps. Differences in the quality and source of organic matter present in the seep habitats are known to be important drivers in macrofaunal community structure and associated food webs. The multivariate analysis provides new insight into the relative importance of the seep sediment quality in supporting dense macrofaunal communities compared to other seeps found throughout the region.

Exceptional discovery of a shallow-water hydrothermal site in the SW area of Basiluzzo islet (Aeolian archipelago, South Tyrrhenian Sea): An environment to preserve

PubMed Central

Andaloro, Franco; Canese, Simonepietro; Bo, Marzia; Di Bella, Marcella; Italiano, Francesco; Sabatino, Giuseppe; Battaglia, Pietro; Consoli, Pierpaolo; Giordano, Patrizia; Spagnoli, Federico; La Cono, Violetta; Yakimov, Michail M.; Scotti, Gianfranco; Romeo, Teresa

2018-01-01

The geological, biological and geochemical features of a particular field of hydrothermal vents, discovered in the Panarea Volcanic Complex during a research survey carried out in 2015, are described for the first time. The site, located at 70–80 m depth off the South-western coast of the islet of Basiluzzo, was named Smoking Land for the presence of a large number of wide and high active chimneys and was characterized in terms of dissolved benthic fluxes, associated macrofauna and megafauna communities and preliminary mineralogy and geochemistry of chimney structures. On the whole field, a total of 39 chimneys, different in size and shape, were closely observed and described; 14 of them showed emission of low temperature hydrothermal fluids of marine origin characterized by acidified chemical conditions. The CTD and benthic chamber measurements highlighted that the Smoking Land is able to form a sea water bottom layer characterized by variable acidity and high DIC and trace elements concentrations; these characteristics weaken moving away from the chimney mouths. The SEM-EDS analysis of the collected solid samples revealed a chimney structure principally composed by amorphous and low crystalline Fe-oxyhydroxides of hydrothermal origins. The ROV explorations revealed a wide coverage of red algae (Peyssonnelia spp.) colonized by the green algae Flabiella petiolata and by suspension feeders, mainly sponges, but also bryozoans, and tubicolous polychaetes. Although novent-exclusive species were identified, the benthic communities found in association to the chimneys included more taxa than those observed in the surrounding no-vent rocky areas. These first findings evidence a submarine dynamic habitat where geological, chemical and biological processes are intimately connected, making the Smoking Land an important site in terms of marine heritage that should be safeguarded and protected. PMID:29300784

Geology and biology of the "Sticky Grounds," shelf-margin carbonate mounds, and mesophotic ecosystem in the eastern Gulf of Mexico

USGS Publications Warehouse

Locker, Stanley D.; Reed, John K.; Farrington, Stephanie; Harter, Stacey; Hine, Albert C.; Dunn, Shane

2016-01-01

Shelf-margin carbonate mounds in water depths of 116–135 m in the eastern Gulf of Mexico along the central west Florida shelf were investigated using swath bathymetry, side-scan sonar, sub-bottom imaging, rock dredging, and submersible dives. These enigmatic structures, known to fisherman as the “Sticky Grounds”, trend along slope, are 5–15 m in relief with base diameters of 5–30 m, and suggest widespread potential for mesophotic reef habitat along the west Florida outer continental shelf. Possible origins are sea-level lowstand coral patch reefs, oyster reefs, or perhaps more recent post-lowstand biohermal development. Rock dredging recovered bioeroded carbonate-rock facies comprised of bored and cemented bioclastics. Rock sample components included calcified worm tubes, pelagic sediment, and oysters normally restricted to brackish nearshore areas. Several reef sites were surveyed at the Sticky Grounds during a cruise in August 2010 with the R/V Seward Johnson using the Johnson-Sea-Link II submersible to ground truth the swath-sonar maps and to quantify and characterize the benthic habitats, benthic macrofauna, fish populations, and coral/sponge cover. This study characterizes for the first time this mesophotic reef ecosystem and associated fish populations, and analyzes the interrelationships of the fish assemblages, benthic habitats and invertebrate biota. These highly eroded rock mounds provide extensive hard-bottom habitat for reef invertebrate species as well as essential fish habitat for reef fish and commercially/recreationally important fish species. The extent and significance of associated living resources with these bottom types is particularly important in light of the 2010 Deepwater Horizon oil spill in the northeastern Gulf and the proximity of the Loop Current. Mapping the distribution of these mesophotic-depth ecosystems is important for quantifying essential fish habitat and describing benthic resources. These activities can improve ecosystem management and planning of future oil and gas activities in this outer continental shelf region.

Compound-Specific Amino Acid Isotopic Analysis of Benthic Food Webs in the Chukchi Sea

NASA Astrophysics Data System (ADS)

Zhang, M.; Cooper, L. W.; Biasatti, D. M.; Grebmeier, J. M.

2014-12-01

The Chukchi Sea is known for locally high standing stocks of benthic macrofauna and strong coupling between pelagic-benthic components of the ecosystem. However, benthic food structure is not fully understood, due to varied sources of particulate organic matter (POM) and the high diversity of benthic invertebrates. We provide the first demonstration of the application of compound-specific amino acid isotope analysis to study the dietary sources and trophic structure for this Arctic marginal sea. About 20 stations in Chukchi Sea were sampled during cruises in August of 2012 and 2013. At each station, phytoplankton, POM and benthic fauna were collected, processed and analyzed using GC-C-IRMS (gas chromatography-combustion-isotope ratio mass spectrometry). Among benthic fauna, dominant species included the following taxonomic groups: Ophiuroidea, Amphipoda, Polychaeta, Gastropoda, Bivalvia, and Cnidaria. The benthic fauna showed similar patterns of individual amino acid δ13C, with glycine the most enriched in 13C and leucine the most depleted in 13C. Specific amino acids including phenylalanine showed spatial variability in δ13C and δ15N values within the sampled area, indicating contributions of different dietary sources including phytoplankton, sea ice algae, benthic algae and terrestrial organic materials. δ15N values of individual amino acids such as the difference between glutamic acid and phenylalanine, i.e. Δ15Nglu-phe (δ15Nglu - δ15Nphe), were also used to identify trophic levels of benthic invertebrates relative to estimates available from bulk δ15N values. These data will ultimately be used to evaluate the spatial variability of organic carbon sources and trophic level interactions of dominant benthic species in the Chukchi Sea.

Arboreal Ant Colonies as ‘Hot-Points’ of Cryptic Diversity for Myrmecophiles: The Weaver Ant Camponotus sp. aff. textor and Its Interaction Network with Its Associates

PubMed Central

Pérez-Lachaud, Gabriela; Lachaud, Jean-Paul

2014-01-01

Introduction Systematic surveys of macrofaunal diversity within ant colonies are lacking, particularly for ants nesting in microhabitats that are difficult to sample. Species associated with ants are generally small and rarely collected organisms, which makes them more likely to be unnoticed. We assumed that this tendency is greater for arthropod communities in microhabitats with low accessibility, such as those found in the nests of arboreal ants that may constitute a source of cryptic biodiversity. Materials and Methods We investigated the invertebrate diversity associated with an undescribed, but already threatened, Neotropical Camponotus weaver ant. As most of the common sampling methods used in studies of ant diversity are not suited for evaluating myrmecophile diversity within ant nests, we evaluated the macrofauna within ant nests through exhaustive colony sampling of three nests and examination of more than 80,000 individuals. Results We identified invertebrates from three classes belonging to 18 taxa, some of which were new to science, and recorded the first instance of the co-occurrence of two brood parasitoid wasp families attacking the same ant host colony. This diversity of ant associates corresponded to a highly complex interaction network. Agonistic interactions prevailed, but the prevalence of myrmecophiles was remarkably low. Conclusions Our data support the hypothesis of the evolution of low virulence in a variety of symbionts associated with large insect societies. Because most myrmecophiles found in this work are rare, strictly specific, and exhibit highly specialized biology, the risk of extinction for these hitherto unknown invertebrates and their natural enemies is high. The cryptic, far unappreciated diversity within arboreal ant nests in areas at high risk of habitat loss qualifies these nests as ‘hot-points’ of biodiversity that urgently require special attention as a component of conservation and management programs. PMID:24941047

General Relationships between Abiotic Soil Properties and Soil Biota across Spatial Scales and Different Land-Use Types

PubMed Central

Birkhofer, Klaus; Schöning, Ingo; Alt, Fabian; Herold, Nadine; Klarner, Bernhard; Maraun, Mark; Marhan, Sven; Oelmann, Yvonne; Wubet, Tesfaye; Yurkov, Andrey; Begerow, Dominik; Berner, Doreen; Buscot, François; Daniel, Rolf; Diekötter, Tim; Ehnes, Roswitha B.; Erdmann, Georgia; Fischer, Christiane; Foesel, Bärbel; Groh, Janine; Gutknecht, Jessica; Kandeler, Ellen; Lang, Christa; Lohaus, Gertrud; Meyer, Annabel; Nacke, Heiko; Näther, Astrid; Overmann, Jörg; Polle, Andrea; Pollierer, Melanie M.; Scheu, Stefan; Schloter, Michael; Schulze, Ernst-Detlef; Schulze, Waltraud; Weinert, Jan; Weisser, Wolfgang W.; Wolters, Volkmar; Schrumpf, Marion

2012-01-01

Very few principles have been unraveled that explain the relationship between soil properties and soil biota across large spatial scales and different land-use types. Here, we seek these general relationships using data from 52 differently managed grassland and forest soils in three study regions spanning a latitudinal gradient in Germany. We hypothesize that, after extraction of variation that is explained by location and land-use type, soil properties still explain significant proportions of variation in the abundance and diversity of soil biota. If the relationships between predictors and soil organisms were analyzed individually for each predictor group, soil properties explained the highest amount of variation in soil biota abundance and diversity, followed by land-use type and sampling location. After extraction of variation that originated from location or land-use, abiotic soil properties explained significant amounts of variation in fungal, meso- and macrofauna, but not in yeast or bacterial biomass or diversity. Nitrate or nitrogen concentration and fungal biomass were positively related, but nitrate concentration was negatively related to the abundances of Collembola and mites and to the myriapod species richness across a range of forest and grassland soils. The species richness of earthworms was positively correlated with clay content of soils independent of sample location and land-use type. Our study indicates that after accounting for heterogeneity resulting from large scale differences among sampling locations and land-use types, soil properties still explain significant proportions of variation in fungal and soil fauna abundance or diversity. However, soil biota was also related to processes that act at larger spatial scales and bacteria or soil yeasts only showed weak relationships to soil properties. We therefore argue that more general relationships between soil properties and soil biota can only be derived from future studies that consider larger spatial scales and different land-use types. PMID:22937029

Modeling the interaction between sedimentary organic carbon and infaunal macrobenthos and their temporal (1980-2000) variation in the southern North Sea

NASA Astrophysics Data System (ADS)

Zhang, Wenyan; Daewel, Ute; Schrum, Corinna; Wirtz, Kai

2017-04-01

The mutual dependency between sedimentary total organic carbon (TOC) and benthic macrofauna is here for the first time quantified by a mechanistic model. The model describes (i) the vertical distribution of infaunal biomass resulting from a trade-off between nutritional benefit (quantity and quality of TOC) and the costs of burial (respiration), and (ii) the variable distribution of TOC being in turn shaped by bioturbation of local macrobenthos. In contrast to state-of-the-art diagenetic models, our approach resolves variations of bioturbation both in space and time, which depend on the macrobenthic community structure and biomass. Our implementation of the dynamic interaction between sedimentary organic carbon and infaunal macrobenthos is able to capture a real-time benthic response to both depositional and erosional events and provides improved estimates of the material exchange flux at the sediment-water interface. Applications to literature data for the North Sea demonstrate the robustness and accuracy of the model and its potential as an analysis tool for the status of TOC as well as benthic infauna in marine sediments. The model was coupled to two different 3D hydrodynamic-ecological models (ECOSMO and MOSSCO for 10 x 10 and 1 x 1 km setups, respectively) to evaluate the robustness of the estimates with respect to variable forcings on different spatial scales. Hindcast simulations of the benthic status in the southern North Sea from 1980 to 2000 indicate a relatively stable pattern at large temporal and spatial scales but significant variations at small scales.

Microfossils, a Key to Unravel Cold-Water Carbonate Mound Evolution through Time: Evidence from the Eastern Alboran Sea

PubMed Central

Stalder, Claudio; Vertino, Agostina; Rosso, Antonietta; Rüggeberg, Andres; Pirkenseer, Claudius; Spangenberg, Jorge E.; Spezzaferri, Silvia; Camozzi, Osvaldo; Rappo, Sacha; Hajdas, Irka

2015-01-01

Cold-water coral (CWC) ecosystems occur worldwide and play a major role in the ocean's carbonate budget and atmospheric CO2 balance since the Danian (~65 m.y. ago). However their temporal and spatial evolution against climatic and oceanographic variability is still unclear. For the first time, we combine the main macrofaunal components of a sediment core from a CWC mound of the Melilla Mounds Field in the Eastern Alboran Sea with the associated microfauna and we highlight the importance of foraminifera and ostracods as indicators of CWC mound evolution in the paleorecord. Abundances of macrofauna along the core reveal alternating periods dominated by distinct CWC taxa (mostly Lophelia pertusa, Madrepora oculata) that correspond to major shifts in foraminiferal and ostracod assemblages. The period dominated by M. oculata coincides with a period characterized by increased export of refractory organic matter to the seafloor and rather unstable oceanographic conditions at the benthic boundary layer with periodically decreased water energy and oxygenation, variable bottom water temperature/density and increased sediment flow. The microfaunal and geochemical data strongly suggest that M. oculata and in particular Dendrophylliidae show a higher tolerance to environmental changes than L. pertusa. Finally, we show evidence for sustained CWC growth during the Alleröd-Younger-Dryas in the Eastern Alboran Sea and that this period corresponds to stable benthic conditions with cold/dense and well oxygenated bottom waters, high fluxes of labile organic matter and relatively strong bottom currents PMID:26447699

Local Geomorphology as a Determinant of Macrofaunal Production in a Mountain Stream.

PubMed

Huryn, Alexander D; Wallace, J Bruce

1987-12-01

By comparing distributions of functional group production among different habitats in an Appalachian mountain stream, the influence of site-specific geomorphology upon the overall functional group composition of the animal community was demonstrated. By replicated monthly sampling, substrate particle size distributions, current velocity, standing crops of benthic organic matter, and production of macrofauna were measured in each of three principal habitats: bedrock-outcrop, riffle, and pool. Samples were taken at randomly assigned locations and the relative number of samples taken from each habitat was assumed to be proportional to the area of the habitat within the stream. These proportions were used to weight production measured in each habitat and the resulting values were summed to obtain production per unit area of average stream bed. The bedrock-outcrop habitat was characterized by high material entertainment and export as indicated by significantly higher current velocities and lower standing crops of detritus compared to the riffle and pool habitats. Pools were sites of low entertainment and high retention of organic matter as demonstrated by significantly lower current velocities and higher accumulations of detritus than other habitats. The riffle habitat was intermediate to the bedrock-outcrop and pool habitats in all parameters measured. Annual production of collector-filterers was highest in the bedrock-outcrop (ash-free dry mass 1920 mg/m 2 ), followed by riffle (278 mg/m 2 ) and pool (32 mg/m 2 ). Although constituting only 19% of the stream area, the bedrock-outcrop habitat contributed 68% of the habitat-weighted collector-filterer production. Annual production of shredders was highest in pools (2616 mg/m 2 ), followed by riffles (1657 mg/m 2 ) and bedrock-outcrop (579 mg/m 2 ). The pool habitat, constituting 23% of stream area, contributed 36% of shredder production. Annual production of scrapers was highest in the riffle habitat (905 mg/m 2 ), followed by bedrock-outcrop (517-mg/m 2 ) and pool (238 mg/m 2 ). Riffles constituted 58% of total stream area and were the source of 77% of the habitat-weighted scraper production. Annual production of engulfing predators was greatest in the pool habitat (2313 mg/m 2 ), followed by riffles (1765 mg/m 2 ) and bedrock-outcrop (687 mg/m 2 ). The relatively lower production of engulfing predators in the bedrock-outcrop habitat reflects a functional shift in mode of resource acquisition by predators, with predaceous collector-filterers (Arcto-psychinae: Trichoptera) predominating in the bedrock-outcrop. Collector-gatherer production was more evenly distributed, with the bedrock-outcrop, riffle, and pool habitats each contributing 14, 54, and 33% to the habitat-weighted production, respectively. Unlike all other functional groups, this distribution was not significantly different from the distribution of stream area among habitats and reflected lack of dependence on specific physical attributes of the local environment for access to food by members of this functional group. Local geomorphology determined the diversity and spatial distribution of bedrock-outcrops, riffles, and pools in the study stream. In turn, the functional structure of the macrofauna, when viewed holistically, was the result of the integration of the relative contributions of each habitat type of total stream area. Total habitat-weighted annual production in the study stream was estimated at 5093 and 1921 mg/m 2 for primary and secondary consumers, respectively. The distribution of habitat-weighted production among functional groups was: collector-gatherers (39%), followed by shredders (225), engulfing predators (22%), scrapers (13%), and collector-filterers (8%). This functional structure agrees favorably with current conceptual models of head water streams draining forested catchments. © 1987 by the Ecological Society of America.

Factors controlling bark decomposition and its role in wood decomposition in five tropical tree species

PubMed Central

Dossa, Gbadamassi G. O.; Paudel, Ekananda; Cao, Kunfang; Schaefer, Douglas; Harrison, Rhett D.

2016-01-01

Organic matter decomposition represents a vital ecosystem process by which nutrients are made available for plant uptake and is a major flux in the global carbon cycle. Previous studies have investigated decomposition of different plant parts, but few considered bark decomposition or its role in decomposition of wood. However, bark can comprise a large fraction of tree biomass. We used a common litter-bed approach to investigate factors affecting bark decomposition and its role in wood decomposition for five tree species in a secondary seasonal tropical rain forest in SW China. For bark, we implemented a litter bag experiment over 12 mo, using different mesh sizes to investigate effects of litter meso- and macro-fauna. For wood, we compared the decomposition of branches with and without bark over 24 mo. Bark in coarse mesh bags decomposed 1.11–1.76 times faster than bark in fine mesh bags. For wood decomposition, responses to bark removal were species dependent. Three species with slow wood decomposition rates showed significant negative effects of bark-removal, but there was no significant effect in the other two species. Future research should also separately examine bark and wood decomposition, and consider bark-removal experiments to better understand roles of bark in wood decomposition. PMID:27698461

Factors controlling bark decomposition and its role in wood decomposition in five tropical tree species.

PubMed

Dossa, Gbadamassi G O; Paudel, Ekananda; Cao, Kunfang; Schaefer, Douglas; Harrison, Rhett D

2016-10-04

Organic matter decomposition represents a vital ecosystem process by which nutrients are made available for plant uptake and is a major flux in the global carbon cycle. Previous studies have investigated decomposition of different plant parts, but few considered bark decomposition or its role in decomposition of wood. However, bark can comprise a large fraction of tree biomass. We used a common litter-bed approach to investigate factors affecting bark decomposition and its role in wood decomposition for five tree species in a secondary seasonal tropical rain forest in SW China. For bark, we implemented a litter bag experiment over 12 mo, using different mesh sizes to investigate effects of litter meso- and macro-fauna. For wood, we compared the decomposition of branches with and without bark over 24 mo. Bark in coarse mesh bags decomposed 1.11-1.76 times faster than bark in fine mesh bags. For wood decomposition, responses to bark removal were species dependent. Three species with slow wood decomposition rates showed significant negative effects of bark-removal, but there was no significant effect in the other two species. Future research should also separately examine bark and wood decomposition, and consider bark-removal experiments to better understand roles of bark in wood decomposition.

Experimenting with ecosystem interaction networks in search of threshold potentials in real-world marine ecosystems.

PubMed

Thrush, Simon F; Hewitt, Judi E; Parkes, Samantha; Lohrer, Andrew M; Pilditch, Conrad; Woodin, Sarah A; Wethey, David S; Chiantore, Mariachiara; Asnaghi, Valentina; De Juan, Silvia; Kraan, Casper; Rodil, Ivan; Savage, Candida; Van Colen, Carl

2014-06-01

Thresholds profoundly affect our understanding and management of ecosystem dynamics, but we have yet to develop practical techniques to assess the risk that thresholds will be crossed. Combining ecological knowledge of critical system interdependencies with a large-scale experiment, we tested for breaks in the ecosystem interaction network to identify threshold potential in real-world ecosystem dynamics. Our experiment with the bivalves Macomona liliana and Austrovenus stutchburyi on marine sandflats in New Zealand demonstrated that reductions in incident sunlight changed the interaction network between sediment biogeochemical fluxes, productivity, and macrofauna. By demonstrating loss of positive feedbacks and changes in the architecture of the network, we provide mechanistic evidence that stressors lead to break points in dynamics, which theory predicts predispose a system to a critical transition.

The FOBIMO (FOraminiferal BIo-MOnitoring) initiative—Towards a standardised protocol for soft-bottom benthic foraminiferal monitoring studies

USGS Publications Warehouse

Schoenfeld, Joachim; Alve, Elisabeth; Geslin, Emmanuelle; Jorissen, Frans; Korsun, Sergei; Spezzaferri, Silva; Abramovich, Sigal; Almogi-Labin, Ahuva; Armynot du Chatelet, Eric; Barras, Christine; Bergamin, Luisa; Bicchi, Erica; Bouchet, Vincent; Cearreta, Alejandro; Di Bella, Letizia; Dijkstra, Noortje; Trevisan Disaro, Sibelle; Ferraro, Luciana; Frontalini, Fabrizio; Gennari, Giordana; Golikova, Elena; Haynert, Kristin; Hess, Silvia; Husum, Katrine; Martins, Virginia; McGann, Mary; Oron, Shai; Romano, Elena; Mello Sousa, Silvia; Tsujimoto, Akira

2012-01-01

The European Community Marine Strategy Framework Directive (MSFD) was established to provide guidelines for monitoring the quality of marine ecosystems. Monitoring the status of marine environments is traditionally based on macrofauna surveys, for which standardised methods have been established. Benthic foraminifera are also good indicators of environmental status because of their fast turnover rates, high degree of specialisation, and the preservation of dead assemblages in the fossil record. In spite of the growing interest in foraminiferal bio-monitoring during the last decades, no standardised methodology has been proposed until today. The aim of the FOraminiferal BIo-MOnitoring (FOBIMO) expert workshop, held in June 2011 at Fribourg, Switzerland, which assembled 37 scientists from 24 research groups and 13 countries, was to develop a suite of standard methods. This paper presents the main outcome of the workshop, a list of motivated recommendations with respect to sampling devices, sample storage, treatment, faunal analysis and documentation. Our recommendations fulfil the criteria imposed both by scientific rigour and by the practical limitations of routine studies. Hence, our aim is to standardise methodologies used in bio-monitoring only and not to limit the use of different methods in pure scientific studies. Unless otherwise stated, all recommendations concern living (stained) benthic foraminiferal assemblages. We have chosen to propose two types of recommendations. Mandatory recommendations have to be followed if a study wants to qualify as sound and compatible to the norms. The most important of these recommendations are the interval from 0 to 1 cm below the sediment surface has to be sampled, and an interface corer or box corer that keeps the sediment surface intact is to be used for offshore surveys. A grab sampler must not be deployed in soft sediments. Three replicate samples are to be taken and analysed separately. Samples are to be washed on a 63-μm screen, and the living benthic foraminiferal fauna of the > 125 μm fraction is to be analysed. Splits are to be picked and counted entirely, and all counted foraminifera from at least one replicate per station have to be stored in micropalaeontological slides. Census data, supplementary laboratory data and microslides have to be archived. Advisory recommendations are to sample in autumn, to have a sample size of 50 cm2 or a tube of 8 cm inner diameter, to use > 70% ethanol as a preservative, rose Bengal at a concentration of 2 grams per litre for staining, and a staining time of at least 14 days. The split size should be defined by a target value of 300 specimens, heavy liquid separation should be avoided, and the 63–125 μm fraction or deeper sediment levels may be considered in some environments. We are convinced that the application of this protocol by a large number of scientists is a necessary first step to a general acceptance of benthic foraminifera as a reliable tool in bio-monitoring studies.

Food-web structure of seep sediment macrobenthos from the Gulf of Mexico

USGS Publications Warehouse

Demopoulos, Amanda W.J.; Gualtieri, Daniel; Kovacs, Kaitlin

2010-01-01

The slope environment of the Gulf of Mexico (GOM) supports dense communities of seep megafaunal invertebrates that rely on endosymbiotic bacteria for nutrition. Seep sediments also contain smaller macrofaunal invertebrates whose nutritional pathways are not well understood. Using stable-isotope analysis, we investigate the utilization of chemosynthetically fixed and methane-derived organic matter by macrofauna. Biological sampling was conducted in three lower-slope GOM seep environs: Green Canyon (GC852, 1428 m), Atwater Valley (AT340, 2230 m), and Alaminos Canyon (AC601, 2384 m). Infaunal delta13C and delta15N exhibited a broad range of values; most infauna appeared to be heterotrophic, although several taxa had very light delta15N and delta13C values, indicating possible reliance on chemoautotrophic symbioses. The lightest delta13C and delta15N values were observed in nematodes (delta13C=-54.6 + or - 0.1 per mil, delta15N=-6.1 + or - 0.2 per mil) and one gastropod (delta13C=-54.1 per mil, delta15N=-1.1 per mil) from Green Canyon. Mixing-model results indicated that sulfur-oxidizing Beggiatoa may be an important food source for seep infauna; the rate of utilization ranged from 60% to 100% at Green Canyon and Atwater Valley. The overall range in isotope values was similar across the three sites, suggesting that biogeochemical processes may be very similar in these geographically distinct areas.

Counting on β-Diversity to Safeguard the Resilience of Estuaries

PubMed Central

de Juan, Silvia; Thrush, Simon F.; Hewitt, Judi E.

2013-01-01

Coastal ecosystems are often stressed by non-point source and cumulative effects that can lead to local-scale community homogenisation and a concomitant loss of large-scale ecological connectivity. Here we investigate the use of β-diversity as a measure of both community heterogeneity and ecological connectivity. To understand the consequences of different environmental scenarios on heterogeneity and connectivity, it is necessary to understand the scale at which different environmental factors affect β-diversity. We sampled macrofauna from intertidal sites in nine estuaries from New Zealand’s North Island that represented different degrees of stress derived from land-use. We used multiple regression models to identify relationships between β-diversity and local sediment variables, factors related to the estuarine and catchment hydrodynamics and morphology and land-based stressors. At local scales, we found higher β-diversity at sites with a relatively high total richness. At larger scales, β-diversity was positively related to γ-diversity, suggesting that a large regional species pool was linked with large-scale heterogeneity in these systems. Local environmental heterogeneity influenced β-diversity at both local and regional scales, although variables at the estuarine and catchment scales were both needed to explain large scale connectivity. The estuaries expected a priori to be the most stressed exhibited higher variance in community dissimilarity between sites and connectivity to the estuary species pool. This suggests that connectivity and heterogeneity metrics could be used to generate early warning signals of cumulative stress. PMID:23755252

Nutrient Enrichment Effects on Benthic Biodiversity by the Mississippi River and Submarine Canyon of the Northern Gulf of Mexico

NASA Astrophysics Data System (ADS)

Wei, C.; Rowe, G. T.

2008-12-01

Biodiversity is measured by (1) α diversity: number of species in relation to a standardized number of individual within a define habitat; (2) β diversity: compositional change or turnover of species between two or more spatial units; and (3) γ diversity: total number of species in a large geographic area. The pattern of biodiversity is usually driven by various physico-chemical conditions. In the deep sea, a cross-isobath parabolic diversity pattern has been well-documented for benthic macrofauna and the cause has been attributed to a dynamic equilibrium between population growth and competition exclusion along a gradient of declining food resources with depth (Rex 1981). Both nutrient-enriched (dominated by opportunistic species) and oligotrophic conditions (slow growth rate) could depress diversity, while the highest diversity can be reached by competitive equilibrium within communities at intermediate resource conditions. In the Gulf of Mexico (GoM), the discharge of Mississippi River can enhance the organic flux to the seafloor adjacent to the mouth of Mississippi River and Mississippi Canyon. The goal of this study was to test Rex's (1981) dynamic equilibrium model between depth-transects that were exposed to different levels of organic enrichment. Four treatments contrasted along the upper slope (250m to 1500m) included (1) Mississippi Canyon (active canyon), (2) De Soto Canyon (inactive canyon), (3) central slope transect (in proximity to Mississippi Canyon), and (4) the west and east slope transects (away from the influence of the Mississippi River). SeaWifs satellite data confirmed that the head of Mississippi Canyon experience highest surface primary production and export POC flux. The lowest α diversity of benthic macrofauna (collecting between 2000 and 2002) was observed at the head of the Mississippi Canyon where γ diversity was relatively high. This suggested that the canyon head was dominated by opportunistic species due the high POC flux but were still able to maintain a large number of species due the physical complexity of the canyon. The change of β diversity was nominal within the Mississippi and De Soto Canyon transects, suggesting that the faunal composition was more homogenous within the canyon than outside of canyon.

[Impact of heavy snow storm and freezing rain disasters on soil fauna in Chinese fir plantation in southern China].

PubMed

Yan, Shao-kui; Zhang, Wei-dong; Liu, Yan-xin; Fu, Sheng-lei; Li, Yuan-liang; Wang, Si-long

2009-01-01

In January 2008, southern China suffered an unusual heavy snowstorm and freezing rain over a large area for almost a month long. This catastrophic event was the worst one in past 50 years, which brought the area a serious impact on the infrastructure, ecology, and environment. To understand the long-term impact of this catastrophic event on the forest ecosystems in this area, a field investigation was conducted on the soil fauna in a pure Chinese fir plantation and a mixed Chinese fir plantation-alder plantation in Huitong County of Hunan Province on March 23, 2008, the date 40 days after the heavy snowstorm and freezing rain. With the abundance and community composition as the main parameters and the monitoring data from the two plantations on March 23, 2007 as the reference, the flexibility and resistance of soil fauna to the disturbances of the catastrophic event was preliminarily evaluated. The results showed that there was a significant deviation of soil fauna communities in the two plantations from the reference. An outbreak increase in microfauna nematode abundance was found from 12216.9 ind x m(-2) to 118343.9 ind x m(-2) in pure Chinese fir plantation and from 25435.9 ind x m(-2) to 84573.0 ind x m(-2) in mixed Chinese fir plantation-alder plantation, while a 27.0% and 85.6% decrease of macrofauna abundance was found in the two plantations, respectively, compared with the reference. Mesofauna abundance also had a significant decrease in litter layer but not in soil. The abundance recovery displayed a trend from quick rate for microfauna to slow rate for macrofauna, which indicated that the soil fauna functional groups, in terms of body size, could be used as a vulnerable indicator in evaluating disturbance event and post-disturbance recovery. By using community ordinations, no shift in soil fauna community composition was detected 40 days after the catastrophic event, suggesting that the community composition of soil invertebrate had a high resistance to catastrophic snowstorm and freezing rain disturbances.

Deep-Sea Biodiversity in the Mediterranean Sea: The Known, the Unknown, and the Unknowable

PubMed Central

Danovaro, Roberto; Company, Joan Batista; Corinaldesi, Cinzia; D'Onghia, Gianfranco; Galil, Bella; Gambi, Cristina; Gooday, Andrew J.; Lampadariou, Nikolaos; Luna, Gian Marco; Morigi, Caterina; Olu, Karine; Polymenakou, Paraskevi; Ramirez-Llodra, Eva; Sabbatini, Anna; Sardà, Francesc; Sibuet, Myriam; Tselepides, Anastasios

2010-01-01

Deep-sea ecosystems represent the largest biome of the global biosphere, but knowledge of their biodiversity is still scant. The Mediterranean basin has been proposed as a hot spot of terrestrial and coastal marine biodiversity but has been supposed to be impoverished of deep-sea species richness. We summarized all available information on benthic biodiversity (Prokaryotes, Foraminifera, Meiofauna, Macrofauna, and Megafauna) in different deep-sea ecosystems of the Mediterranean Sea (200 to more than 4,000 m depth), including open slopes, deep basins, canyons, cold seeps, seamounts, deep-water corals and deep-hypersaline anoxic basins and analyzed overall longitudinal and bathymetric patterns. We show that in contrast to what was expected from the sharp decrease in organic carbon fluxes and reduced faunal abundance, the deep-sea biodiversity of both the eastern and the western basins of the Mediterranean Sea is similarly high. All of the biodiversity components, except Bacteria and Archaea, displayed a decreasing pattern with increasing water depth, but to a different extent for each component. Unlike patterns observed for faunal abundance, highest negative values of the slopes of the biodiversity patterns were observed for Meiofauna, followed by Macrofauna and Megafauna. Comparison of the biodiversity associated with open slopes, deep basins, canyons, and deep-water corals showed that the deep basins were the least diverse. Rarefaction curves allowed us to estimate the expected number of species for each benthic component in different bathymetric ranges. A large fraction of exclusive species was associated with each specific habitat or ecosystem. Thus, each deep-sea ecosystem contributes significantly to overall biodiversity. From theoretical extrapolations we estimate that the overall deep-sea Mediterranean biodiversity (excluding prokaryotes) reaches approximately 2805 species of which about 66% is still undiscovered. Among the biotic components investigated (Prokaryotes excluded), most of the unknown species are within the phylum Nematoda, followed by Foraminifera, but an important fraction of macrofaunal and megafaunal species also remains unknown. Data reported here provide new insights into the patterns of biodiversity in the deep-sea Mediterranean and new clues for future investigations aimed at identifying the factors controlling and threatening deep-sea biodiversity. PMID:20689848

Deep-sea biodiversity in the Mediterranean Sea: the known, the unknown, and the unknowable.

PubMed

Danovaro, Roberto; Company, Joan Batista; Corinaldesi, Cinzia; D'Onghia, Gianfranco; Galil, Bella; Gambi, Cristina; Gooday, Andrew J; Lampadariou, Nikolaos; Luna, Gian Marco; Morigi, Caterina; Olu, Karine; Polymenakou, Paraskevi; Ramirez-Llodra, Eva; Sabbatini, Anna; Sardà, Francesc; Sibuet, Myriam; Tselepides, Anastasios

2010-08-02

Deep-sea ecosystems represent the largest biome of the global biosphere, but knowledge of their biodiversity is still scant. The Mediterranean basin has been proposed as a hot spot of terrestrial and coastal marine biodiversity but has been supposed to be impoverished of deep-sea species richness. We summarized all available information on benthic biodiversity (Prokaryotes, Foraminifera, Meiofauna, Macrofauna, and Megafauna) in different deep-sea ecosystems of the Mediterranean Sea (200 to more than 4,000 m depth), including open slopes, deep basins, canyons, cold seeps, seamounts, deep-water corals and deep-hypersaline anoxic basins and analyzed overall longitudinal and bathymetric patterns. We show that in contrast to what was expected from the sharp decrease in organic carbon fluxes and reduced faunal abundance, the deep-sea biodiversity of both the eastern and the western basins of the Mediterranean Sea is similarly high. All of the biodiversity components, except Bacteria and Archaea, displayed a decreasing pattern with increasing water depth, but to a different extent for each component. Unlike patterns observed for faunal abundance, highest negative values of the slopes of the biodiversity patterns were observed for Meiofauna, followed by Macrofauna and Megafauna. Comparison of the biodiversity associated with open slopes, deep basins, canyons, and deep-water corals showed that the deep basins were the least diverse. Rarefaction curves allowed us to estimate the expected number of species for each benthic component in different bathymetric ranges. A large fraction of exclusive species was associated with each specific habitat or ecosystem. Thus, each deep-sea ecosystem contributes significantly to overall biodiversity. From theoretical extrapolations we estimate that the overall deep-sea Mediterranean biodiversity (excluding prokaryotes) reaches approximately 2805 species of which about 66% is still undiscovered. Among the biotic components investigated (Prokaryotes excluded), most of the unknown species are within the phylum Nematoda, followed by Foraminifera, but an important fraction of macrofaunal and megafaunal species also remains unknown. Data reported here provide new insights into the patterns of biodiversity in the deep-sea Mediterranean and new clues for future investigations aimed at identifying the factors controlling and threatening deep-sea biodiversity.

Food web flows through a sub-arctic deep-sea benthic community

NASA Astrophysics Data System (ADS)

Gontikaki, E.; van Oevelen, D.; Soetaert, K.; Witte, U.

2011-11-01

The benthic food web of the deep Faroe-Shetland Channel (FSC) was modelled by using the linear inverse modelling methodology. The reconstruction of carbon pathways by inverse analysis was based on benthic oxygen uptake rates, biomass data and transfer of labile carbon through the food web as revealed by a pulse-chase experiment. Carbon deposition was estimated at 2.2 mmol C m -2 d -1. Approximately 69% of the deposited carbon was respired by the benthic community with bacteria being responsible for 70% of the total respiration. The major fraction of the labile detritus flux was recycled within the microbial loop leaving merely 2% of the deposited labile phytodetritus available for metazoan consumption. Bacteria assimilated carbon at high efficiency (0.55) but only 24% of bacterial production was grazed by metazoans; the remaining returned to the dissolved organic matter pool due to viral lysis. Refractory detritus was the basal food resource for nematodes covering ∼99% of their carbon requirements. On the contrary, macrofauna seemed to obtain the major part of their metabolic needs from bacteria (49% of macrofaunal consumption). Labile detritus transfer was well-constrained, based on the data from the pulse-chase experiment, but appeared to be of limited importance to the diet of the examined benthic organisms (<1% and 5% of carbon requirements of nematodes and macrofauna respectively). Predation on nematodes was generally low with the exception of sub-surface deposit-feeding polychaetes that obtained 35% of their energy requirements from nematode ingestion. Carnivorous polychaetes also covered 35% of their carbon demand through predation although the preferred prey, in this case, was other macrofaunal animals rather than nematodes. Bacteria and detritus contributed 53% and 12% to the total carbon ingestion of carnivorous polychaetes suggesting a high degree of omnivory among higher consumers in the FSC benthic food web. Overall, this study provided a unique insight into the functioning of a deep-sea benthic community and demonstrated how conventional data can be exploited further when combined with state-of-the-art modelling approaches.

Organism-Sediment Interactions Govern Post-Hypoxia Recovery of Ecosystem Functioning

PubMed Central

Van Colen, Carl; Rossi, Francesca; Montserrat, Francesc; Andersson, Maria G. I.; Gribsholt, Britta; Herman, Peter M. J.; Degraer, Steven; Vincx, Magda; Ysebaert, Tom; Middelburg, Jack J.

2012-01-01

Hypoxia represents one of the major causes of biodiversity and ecosystem functioning loss for coastal waters. Since eutrophication-induced hypoxic events are becoming increasingly frequent and intense, understanding the response of ecosystems to hypoxia is of primary importance to understand and predict the stability of ecosystem functioning. Such ecological stability may greatly depend on the recovery patterns of communities and the return time of the system properties associated to these patterns. Here, we have examined how the reassembly of a benthic community contributed to the recovery of ecosystem functioning following experimentally-induced hypoxia in a tidal flat. We demonstrate that organism-sediment interactions that depend on organism size and relate to mobility traits and sediment reworking capacities are generally more important than recovering species richness to set the return time of the measured sediment processes and properties. Specifically, increasing macrofauna bioturbation potential during community reassembly significantly contributed to the recovery of sediment processes and properties such as denitrification, bedload sediment transport, primary production and deep pore water ammonium concentration. Such bioturbation potential was due to the replacement of the small-sized organisms that recolonised at early stages by large-sized bioturbating organisms, which had a disproportionately stronger influence on sediment. This study suggests that the complete recovery of organism-sediment interactions is a necessary condition for ecosystem functioning recovery, and that such process requires long periods after disturbance due to the slow growth of juveniles into adult stages involved in these interactions. Consequently, repeated episodes of disturbance at intervals smaller than the time needed for the system to fully recover organism-sediment interactions may greatly impair the resilience of ecosystem functioning. PMID:23185440

A prehistoric tsunami induced long-lasting ecosystem changes on a semi-arid tropical island--the case of Boka Bartol (Bonaire, Leeward Antilles).

PubMed

Engel, Max; Brückner, Helmut; Fürstenberg, Sascha; Frenzel, Peter; Konopczak, Anna Maria; Scheffers, Anja; Kelletat, Dieter; May, Simon Matthias; Schäbitz, Frank; Daut, Gerhard

2013-01-01

The Caribbean is highly vulnerable to coastal hazards. Based on their short recurrence intervals over the intra-American seas, high-category tropical cyclones and their associated effects of elevated storm surge, heavy wave impacts, mudslides and floods represent the most serious threat. Given the abundance of historical accounts and trigger mechanisms (strike-slip motion and oblique collision at the northern and southern Caribbean plate boundaries, submarine and coastal landslides, volcanism), tsunamis must be considered as well. This paper presents interdisciplinary multi-proxy investigations of sediment cores (grain size distribution, carbonate content, loss-on-ignition, magnetic susceptibility, microfauna, macrofauna) from Washington-Slagbaai National Park, NW Bonaire (Leeward Antilles). No historical tsunami is recorded for this island. However, an allochthonous marine layer found in all cores at Boka Bartol reveals several sedimentary criteria typically linked with tsunami deposits. Calibrated (14)C data from these cores point to a palaeotsunami with a maximum age of 3,300 years. Alternative explanations for the creation of this layer, such as inland flooding during tropical cyclones, cannot entirely be ruled out, though in recent times even the strongest of these events on Bonaire did not deposit significant amounts of sediment onshore. The setting of Boka Bartol changed from an open mangrove-fringed embayment into a poly- to hyperhaline lagoon due to the establishment or closure of a barrier of coral rubble during or subsequent to the inferred event. The timing of the event is supported by further sedimentary evidence from other lagoonal and alluvial archives on Bonaire.

Biodiversity and density of subtidal benthos of an oceanic tropical island (a comparison within the Pacific Ocean)

NASA Astrophysics Data System (ADS)

Sibaja-Cordero, Jeffrey A.; Troncoso, Jesús S.; Cortés, Jorge; Moreira, Juan; Vargas, José A.; Benavides-Varela, Catalina

2016-09-01

The marine macrofauna of the shallow sandy bottom of Isla del Coco, Costa Rica (5°32‧N-87°04‧W) was assessed in April 2010. Comparisons of richness, density and diversity between levels of exposure to ocean influence were carried out. During this study 15,407 specimens with a mean density of 1826 ind m- 2 were found between 3-75 m depth. The specimens were distributed in 267 taxa (29% new additions) with a mean of 55 ± 14 expected taxa m- 2. The values of density, richness and diversity were higher at the exposed coast, whereas they decreased at inner bays due to the influence of freshwater input. These estimates were compared with 40 studies in the Tropical Pacific Ocean (TPO). Taxa and density previously reported from the TPO were dependent on the area and depth range studied. Additionally, these parameters varied according to the sampling gear used. For example, higher densities were reported by using corers or boxcorers. The Shannon-Wiener index was most effective in identifying sediment and geographical patterns of variation along the TPO. Differences in these diversity parameters were also found between islands and mainland studies. Moreover, richness and density values from Isla del Coco were higher than the same parameters reported in studies using grabs in the TPO. At Isla del Coco annelids were dominant in terms of relative abundance (49.6%), followed by crustaceans (10.1%), mollusks (2.8%), and others faunal groups (37.5%). The faunistic composition at Isla del Coco differed when compared to the rest of localities of TPO due to the higher contribution of miscellaneous groups. In conclusion, the comparison with previous studies in the TPO indicate that islands like Isla del Coco have high numbers of taxa and diversity than those of the mainland, but lower density. However, this value is influenced by the sampling methodology. The taxa accumulation curve at Isla del Coco did not reach the asymptote, suggesting that an intensive sampling, especially at deep waters, would increase the number of taxa.

Ecosystem characteristics and processes facilitating persistent macrobenthic biomass hotspots and associated benthivory in the Pacific Arctic

NASA Astrophysics Data System (ADS)

Grebmeier, Jacqueline M.; Bluhm, Bodil A.; Cooper, Lee W.; Danielson, Seth L.; Arrigo, Kevin R.; Blanchard, Arny L.; Clarke, Janet T.; Day, Robert H.; Frey, Karen E.; Gradinger, Rolf R.; Kędra, Monika; Konar, Brenda; Kuletz, Kathy J.; Lee, Sang H.; Lovvorn, James R.; Norcross, Brenda L.; Okkonen, Stephen R.

2015-08-01

The northern Bering and Chukchi Seas are areas in the Pacific Arctic characterized by high northward advection of Pacific Ocean water, with seasonal variability in sea ice cover, water mass characteristics, and benthic processes. In this review, we evaluate the biological and environmental factors that support communities of benthic prey on the continental shelves, with a focus on four macrofaunal biomass "hotspots." For the purpose of this study, we define hotspots as macrofaunal benthic communities with high biomass that support a corresponding ecological guild of benthivorous seabird and marine mammal populations. These four benthic hotspots are regions within the influence of the St. Lawrence Island Polynya (SLIP), the Chirikov Basin between St. Lawrence Island and Bering Strait (Chirikov), north of Bering Strait in the southeast Chukchi Sea (SECS), and in the northeast Chukchi Sea (NECS). Detailed benthic macrofaunal sampling indicates that these hotspot regions have been persistent over four decades of sampling due to annual reoccurrence of seasonally consistent, moderate-to-high water column production with significant export of carbon to the underlying sediments. We also evaluate the usage of the four benthic hotspot regions by benthic prey consumers to illuminate predator-prey connectivity. In the SLIP hotspot, spectacled eiders and walruses are important winter consumers of infaunal bivalves and polychaetes, along with epibenthic gastropods and crabs. In the Chirikov hotspot, gray whales have historically been the largest summer consumers of benthic macrofauna, primarily feeding on ampeliscid amphipods in the summer, but they are also foraging further northward in the SECS and NECS hotspots. Areas of concentrated walrus foraging occur in the SLIP hotspot in winter and early spring, the NECS hotspot in summer, and the SECS hotspot in fall. Bottom up forcing by hydrography and food supply to the benthos influences persistence and composition of benthic prey that then influences the distributions of benthivorous upper trophic level populations.

Analysis of Biota to Evaluate the Risks Associated with Chemical Warfare Materiel Present in Sea-Disposed Military Munitions to Human Health and the Environment

NASA Astrophysics Data System (ADS)

Briggs, C. W.; Bissonnette, M. C.; Edwards, M.; Shjegstad, S. M.

2016-12-01

Thousands of 100-lb M47A series bombs containing sulfur mustard were disposed in the ocean following World War II yet few studies have been conducted at sites in excess of 250 m, the depth where most discarded military munitions (DMM) were disposed. The Hawai`i Undersea Military Munitions Assessment (HUMMA) project was conducted to evaluate the risk from chemical warfare materiel (CWM) in DMM to human health, measuring ecological differences between the disposal area and nearby but otherwise similar areas, and evaluating the most efficient platforms for surveying DMM sea-disposal sites located at depths between 400-650 m. During the 2014 HUMMA Sampling Survey, the Jason 2 remotely operated vehicle was used to collect data. Shrimp were collected and analyzed to assess the potential for bioaccumulation of CWM, energetics and metals from munitions. No CWM was detected in H. ensifer tissue samples, indicating bioaccumulation is not occurring. Low levels of 2,4,6-trinitrotoluene, 4-amino-2,6-­dinitrotoluene, 1,3,5-trinitrobenzene, nitrobenzene, arsenic, copper, and lead were detected and the concentrations were not significantly different at DMM and control sites. No visible deformities, eroded fins, lesions, or tumors were observed on the shrimp living in the vicinity of M47A bombs. Given these results and under current and potential future uses of the HUMMA study area, health risks to likely receptors are within EPA acceptable levels. Photographic data and benthic infauna analysis were used to study benthic organisms that lived on or near munitions. There was no statistically distinguishable difference between organism distributions in dense and sparse munitions fields. Conventional munitions were found to have the greatest number of benthic infauna individuals, with control sites generally having the least number of individuals. This is consistent with the benthic macro-fauna analysis, which shows that munitions provide habitat.

Spatial Variability of Benthic-Pelagic Coupling in an Estuary Ecosystem: Consequences for Microphytobenthos Resuspension Phenomenon

PubMed Central

Ubertini, Martin; Lefebvre, Sébastien; Gangnery, Aline; Grangeré, Karine; Le Gendre, Romain; Orvain, Francis

2012-01-01

The high degree of physical factors in intertidal estuarine ecosystem increases material processing between benthic and pelagic compartments. In these ecosystems, microphytobenthos resuspension is a major phenomenon since its contribution to higher trophic levels can be highly significant. Understanding the sediment and associated microphytobenthos resuspension and its fate in the water column is indispensable for measuring the food available to benthic and pelagic food webs. To identify and hierarchize the physical/biological factors potentially involved in MPB resuspension, the entire intertidal area and surrounding water column of an estuarine ecosystem, the Bay des Veys, was sampled during ebb tide. A wide range of physical parameters (hydrodynamic regime, grain size of the sediment, and suspended matter) and biological parameters (flora and fauna assemblages, chlorophyll) were analyzed to characterize benthic-pelagic coupling at the bay scale. Samples were collected in two contrasted periods, spring and late summer, to assess the impact of forcing variables on benthic-pelagic coupling. A mapping approach using kriging interpolation enabled us to overlay benthic and pelagic maps of physical and biological variables, for both hydrological conditions and trophic indicators. Pelagic Chl a concentration was the best predictor explaining the suspension-feeders spatial distribution. Our results also suggest a perennial spatio-temporal structure of both benthic and pelagic compartments in the ecosystem, at least when the system is not imposed to intense wind, with MPB distribution controlled by both grain size and bathymetry. The benthic component appeared to control the pelagic one via resuspension phenomena at the scale of the bay. Co-inertia analysis showed closer benthic-pelagic coupling between the variables in spring. The higher MPB biomass observed in summer suggests a higher contribution to filter-feeders diets, indicating a higher resuspension effect in summer than in spring, in turn suggesting an important role of macrofauna bioturbation and filter feeding (Cerastoderma edule). PMID:22952910

Evolution of body size, vision, and biodiversity of coral-associated organisms: evidence from fossil crustaceans in cold-water coral and tropical coral ecosystems.

PubMed

Klompmaker, Adiël A; Jakobsen, Sten L; Lauridsen, Bodil W

2016-06-16

Modern cold-water coral and tropical coral environments harbor a highly diverse and ecologically important macrofauna of crustaceans that face elevated extinction risks due to reef decline. The effect of environmental conditions acting on decapod crustaceans comparing these two habitats is poorly understood today and in deep time. Here, we compare the biodiversity, eye socket height as a proxy for eye size, and body size of decapods in fossil cold-water and tropical reefs that formed prior to human disturbance. We show that decapod biodiversity is higher in fossil tropical reefs from The Netherlands, Italy, and Spain compared to that of the exceptionally well-preserved Paleocene (Danian) cold-water reef/mound ecosystem from Faxe (Denmark), where decapod diversity is highest in a more heterogeneous, mixed bryozoan-coral habitat instead of in coral and bryozoan-dominated facies. The relatively low diversity at Faxe was not influenced substantially by the preceding Cretaceous/Paleogene extinction event that is not apparent in the standing diversity of decapods in our analyses, or by sampling, preservation, and/or a latitudinal diversity gradient. Instead, the lower availability of food and fewer hiding places for decapods may explain this low diversity. Furthermore, decapods from Faxe are larger than those from tropical waters for half of the comparisons, which may be caused by a lower number of predators, the delayed maturity, and the increased life span of crustaceans in deeper, colder waters. Finally, deep-water specimens of the benthic crab Caloxanthus from Faxe exhibit a larger eye socket size compared to congeneric specimens from tropical reefs, suggesting that dim light conditions favored the evolution of relatively large eyes. The results suggest a strong habitat control on the biodiversity of crustaceans in coral-associated environments and that the diversity difference between deep, cold-water reefs and tropical reefs evolved at least ~63 million years ago. Futhermore, body size and vision in crustaceans evolved in response to environmental conditions in the deep sea. We highlight the usefulness of ancient reefs to study organismal evolution and ecology.

Macrofaunal communities associated with chemosynthetic habitats from the U.S. Atlantic margin: A comparison among depth and habitat types

USGS Publications Warehouse

Bourque, Jill R.; Robertson, Craig M.; Brooke, Sandra; Demopoulos, Amanda W.J.

2016-01-01

Hydrocarbon seeps support distinct benthic communities capable of tolerating extreme environmental conditions and utilizing reduced chemical compounds for nutrition. In recent years, several locations of methane seepage have been mapped along the U.S. Atlantic continental slope. In 2012 and 2013, two newly discovered seeps were investigated in this region: a shallow site near Baltimore Canyon (BCS, 366–412 m) and a deep site near Norfolk Canyon (NCS, 1467–1602 m), with both sites containing extensive chemosynthetic mussel bed and microbial mat habitats. Sediment push cores, suction samples, and Ekman box cores were collected to quantify the abundance, diversity, and community structure of benthic macrofauna (>300 μm) in mussel beds, mats, and slope habitats at both sites. Community data from the deep site were also assessed in relation to the associated sediment environment (organic carbon and nitrogen, stable carbon and nitrogen isotopes, grain size, and depth). Infaunal assemblages and densities differed both between depths and among habitat types. Macrofaunal densities in microbial mats were four times greater than those present in mussel beds and slope sediments and were dominated by the annelid families Dorvilleidae, Capitellidae, and Tubificidae, while mussel habitats had higher proportions of crustaceans. Diversity was lower in BCS microbial mat habitats, but higher in mussel and slope sediments compared to NCS habitats. Multivariate statistical analysis revealed specific sediment properties as important for distinguishing the macrofaunal communities, including larger grain sizes present within NCS microbial mat habitats and depleted stable carbon isotopes (δ13C) in sediments present at mussel beds. These results suggest that habitat differences in the quality and source of organic matter are driving the observed patterns in the infaunal assemblages, including high β diversity and high variability in the macrofaunal community composition. This study is the first investigation of seep infauna along the U.S. Atlantic slope north of the Blake Ridge Diapir and provides a baseline for future regional comparisons to other seep habitats along the Atlantic margin.

Macrofaunal communities associated with chemosynthetic habitats from the U.S. Atlantic margin: A comparison among depth and habitat types

NASA Astrophysics Data System (ADS)

Bourque, Jill R.; Robertson, Craig M.; Brooke, Sandra; Demopoulos, Amanda W. J.

2017-03-01

Hydrocarbon seeps support distinct benthic communities capable of tolerating extreme environmental conditions and utilizing reduced chemical compounds for nutrition. In recent years, several locations of methane seepage have been mapped along the U.S. Atlantic continental slope. In 2012 and 2013, two newly discovered seeps were investigated in this region: a shallow site near Baltimore Canyon (BCS, 366-412 m) and a deep site near Norfolk Canyon (NCS, 1467-1602 m), with both sites containing extensive chemosynthetic mussel bed and microbial mat habitats. Sediment push cores, suction samples, and Ekman box cores were collected to quantify the abundance, diversity, and community structure of benthic macrofauna (>300 μm) in mussel beds, mats, and slope habitats at both sites. Community data from the deep site were also assessed in relation to the associated sediment environment (organic carbon and nitrogen, stable carbon and nitrogen isotopes, grain size, and depth). Infaunal assemblages and densities differed both between depths and among habitat types. Macrofaunal densities in microbial mats were four times greater than those present in mussel beds and slope sediments and were dominated by the annelid families Dorvilleidae, Capitellidae, and Tubificidae, while mussel habitats had higher proportions of crustaceans. Diversity was lower in BCS microbial mat habitats, but higher in mussel and slope sediments compared to NCS habitats. Multivariate statistical analysis revealed specific sediment properties as important for distinguishing the macrofaunal communities, including larger grain sizes present within NCS microbial mat habitats and depleted stable carbon isotopes (δ13C) in sediments present at mussel beds. These results suggest that habitat differences in the quality and source of organic matter are driving the observed patterns in the infaunal assemblages, including high β diversity and high variability in the macrofaunal community composition. This study is the first investigation of seep infauna along the U.S. Atlantic slope north of the Blake Ridge Diapir and provides a baseline for future regional comparisons to other seep habitats along the Atlantic margin.

Authigenic minerals related to carbon and sulfur biogeochemical cycling from deep-sea active methane seeps offshore South-West Africa

NASA Astrophysics Data System (ADS)

Pierre, C.; Blanc-Valleron, M.; Demange, J.; Boudouma, O.; Pape, T.; Himmler, T.; Fekete, N.; Spiess, V.

2011-12-01

The South-West African continental margin is well known for occurrences of active methane-rich fluid seeps that are associated with seafloor pockmarks in a broad range of water depths, from the shelf to the deep basins. High gas flares in the water column, luxurious oases of benthic fauna, gas hydrate accumulations and diagenetic carbonate crusts have been observed at these seeps. During the M76/3a expedition of R/V METEOR (summer 2008) gravity cores recovered abundant authigenic carbonate concretions from five pockmarks of the South-West African margin including previously studied sites (Hydrate Hole, Worm Hole, Regab Pockmark) and two sites (Deep Hole, Baboon Cluster) newly discovered during the cruise. Carbonate concretions were mostly associated to sediments settled by seep-associated benthic macrofauna and bearing shallow gas hydrates. We present new results of the comprehensive analysis of the mineralogy and isotope geochemistry of the diagenetic carbonates sampled in the five pockmarks. The mineralogy of authigenic carbonates is dominated by magnesian calcite and aragonite, associated occasionally with dolomite. The oxygen and carbon isotopic compositions of authigenic carbonates (+2.4 < δ18O % V-PDB < +6.2 ; -61.0 < δ13C % V-PDB < -40.1) indicate that microbial anaerobic oxidation of methane (AOM) was the main process controling carbonate precipitation within sub-seafloor sediments deposited from the glacial-time up to the present. The frequent occurrence of diagenetic gypsum crystals within the sediments demonstrates that bio-irrigation with oxygenated bottom water by the burrowing activity of benthic fauna caused the secondary oxidation of reduced sulfur (hydrogen sulfide and pyrite) that was produced by sulfate reducting bacteria as a by-product of AOM; during the sulfide oxidation process, the released acidity induced the partial dissolution of carbonates. Our results demonstrate also the strong link that existed between the carbon and sulfur cycles in cold seep systems where the anoxic-oxic boundary may move within the sediment due to variations in the strength of the methane flux.

Potential contribution of surface-dwelling Sargassum algae to deep-sea ecosystems in the southern North Atlantic

NASA Astrophysics Data System (ADS)

Baker, Philip; Minzlaff, Ulrike; Schoenle, Alexandra; Schwabe, Enrico; Hohlfeld, Manon; Jeuck, Alexandra; Brenke, Nils; Prausse, Dennis; Rothenbeck, Marcel; Brix, Saskia; Frutos, Inmaculada; Jörger, Katharina M.; Neusser, Timea P.; Koppelmann, Rolf; Devey, Colin; Brandt, Angelika; Arndt, Hartmut

2018-02-01

Deep-sea ecosystems, limited by their inability to use primary production as a source of carbon, rely on other sources to maintain life. Sedimentation of organic carbon into the deep sea has been previously studied, however, the high biomass of sedimented Sargassum algae discovered during the VEMA Transit expedition in 2014/2015 to the southern North Atlantic, and its potential as a regular carbon input, has been an underestimated phenomenon. To determine the potential for this carbon flux, a literature survey of previous studies that estimated the abundance of surface water Sargassum was conducted. We compared these estimates with quantitative analyses of sedimented Sargassum appearing on photos taken with an autonomous underwater vehicle (AUV) directly above the abyssal sediment during the expedition. Organismal communities associated to Sargassum fluitans from surface waters were investigated and Sargassum samples collected from surface waters and the deep sea were biochemically analyzed (fatty acids, stable isotopes, C:N ratios) to determine degradation potential and the trophic significance within deep-sea communities. The estimated Sargassum biomass (fresh weight) in the deep sea (0.07-3.75 g/m2) was several times higher than that estimated from surface waters in the North Atlantic (0.024-0.84 g/m2). Biochemical analysis showed degradation of Sargassum occurring during sedimentation or in the deep sea, however, fatty acid and stable isotope analysis did not indicate direct trophic interactions between the algae and benthic organisms. Thus, it is assumed that components of the deep-sea microbial food web form an important link between the macroalgae and larger benthic organisms. Evaluation of the epifauna showed a diverse nano- micro-, meio, and macrofauna on surface Sargassum and maybe transported across the Atlantic, but we had no evidence for a vertical exchange of fauna components. The large-scale sedimentation of Sargassum forms an important trophic link between surface and benthic production and has to be further considered in the future as a regular carbon input to the deep-sea floor in the North Atlantic.

Unique metabolites protect earthworms against plant polyphenols.

PubMed

Liebeke, Manuel; Strittmatter, Nicole; Fearn, Sarah; Morgan, A John; Kille, Peter; Fuchser, Jens; Wallis, David; Palchykov, Vitalii; Robertson, Jeremy; Lahive, Elma; Spurgeon, David J; McPhail, David; Takáts, Zoltán; Bundy, Jacob G

2015-08-04

All higher plants produce polyphenols, for defence against above-ground herbivory. These polyphenols also influence the soil micro- and macro-fauna that break down plant leaf litter. Polyphenols therefore indirectly affect the fluxes of soil nutrients and, ultimately, carbon turnover and ecosystem functioning in soils. It is unknown how earthworms, the major component of animal biomass in many soils, cope with high-polyphenol diets. Here, we show that earthworms possess a class of unique surface-active metabolites in their gut, which we term 'drilodefensins'. These compounds counteract the inhibitory effects of polyphenols on earthworm gut enzymes, and high-polyphenol diets increase drilodefensin concentrations in both laboratory and field populations. This shows that drilodefensins protect earthworms from the harmful effects of ingested polyphenols. We have identified the key mechanism for adaptation to a dietary challenge in an animal group that has a major role in organic matter recycling in soils worldwide.

Nitrous oxide emission by aquatic macrofauna

PubMed Central

Stief, Peter; Poulsen, Morten; Nielsen, Lars Peter; Brix, Hans; Schramm, Andreas

2009-01-01

A large variety of aquatic animals was found to emit the potent greenhouse gas nitrous oxide when nitrate was present in the environment. The emission was ascribed to denitrification by ingested bacteria in the anoxic animal gut, and the exceptionally high N2O-to-N2 production ratio suggested delayed induction of the last step of denitrification. Filter- and deposit-feeding animal species showed the highest rates of nitrous oxide emission and predators the lowest, probably reflecting the different amounts of denitrifying bacteria in the diet. We estimate that nitrous oxide emission by aquatic animals is quantitatively important in nitrate-rich aquatic environments like freshwater, coastal marine, and deep-sea ecosystems. The contribution of this source to overall nitrous oxide emission from aquatic environments might further increase because of the projected increase of nitrate availability in tropical regions and the numeric dominance of filter- and deposit-feeders in eutrophic ecosystems. PMID:19255427

European derived Saccharomyces cerevisiae colonisation of New Zealand vineyards aided by humans

PubMed Central

Gayevskiy, Velimir; Lee, Soon

2016-01-01

Humans have acted as vectors for species and expanded their ranges since at least the dawn of agriculture. While relatively well characterised for macrofauna and macroflora, the extent and dynamics of human-aided microbial dispersal is poorly described. We studied the role which humans have played in manipulating the distribution of Saccharomyces cerevisiae, one of the world's most important microbes, using whole genome sequencing. We include 52 strains representative of the diversity in New Zealand to the global set of genomes for this species. Phylogenomic approaches show an exclusively European origin of the New Zealand population, with a minimum of 10 founder events mostly taking place over the last 1000 years. Our results show that humans have expanded the range of S. cerevisiae and transported it to New Zealand where it was not previously present, where it has now become established in vineyards, but radiation to native forests appears limited. PMID:27744274

Ocean deoxygenation in a warming world.

PubMed

Keeling, Ralph E; Körtzinger, Arne; Gruber, Nicolas

2010-01-01

Ocean warming and increased stratification of the upper ocean caused by global climate change will likely lead to declines in dissolved O2 in the ocean interior (ocean deoxygenation) with implications for ocean productivity, nutrient cycling, carbon cycling, and marine habitat. Ocean models predict declines of 1 to 7% in the global ocean O2 inventory over the next century, with declines continuing for a thousand years or more into the future. An important consequence may be an expansion in the area and volume of so-called oxygen minimum zones, where O2 levels are too low to support many macrofauna and profound changes in biogeochemical cycling occur. Significant deoxygenation has occurred over the past 50 years in the North Pacific and tropical oceans, suggesting larger changes are looming. The potential for larger O2 declines in the future suggests the need for an improved observing system for tracking ocean 02 changes.

Natural soil reservoirs for human pathogenic and fecal indicator bacteria

USGS Publications Warehouse

Boschiroli, Maria L; Falkinham, Joseph; Favre-Bonte, Sabine; Nazaret, Sylvie; Piveteau, Pascal; Sadowsky, Michael J.; Byappanahalli, Muruleedhara; Delaquis, Pascal; Hartmann, Alain

2016-01-01

Soils receive inputs of human pathogenic and indicator bacteria through land application of animal manures or sewage sludge, and inputs by wildlife. Soil is an extremely heterogeneous substrate and contains meso- and macrofauna that may be reservoirs for bacteria of human health concern. The ability to detect and quantify bacteria of human health concern is important in risk assessments and in evaluating the efficacy of agricultural soil management practices that are protective of crop quality and protective of adjacent water resources. The present chapter describes the distribution of selected Gram-positive and Gram-negative bacteria in soils. Methods for detecting and quantifying soilborne bacteria including extraction, enrichment using immunomagnetic capture, culturing, molecular detection and deep sequencing of metagenomic DNA to detect pathogens are overviewed. Methods for strain phenotypic and genotypic characterization are presented, as well as how comparison with clinical isolates can inform the potential for human health risk.

Food habits of fishes on an exposed sandy beach at Fukiagehama, South-West Kyushu Island, Japan

NASA Astrophysics Data System (ADS)

Nakane, Yukinori; Suda, Yusuke; Sano, Mitsuhiko

2011-06-01

To clarify the feeding habits and major food sources of sandy beach fishes, the gut contents of 55 fish species collected on a sandy beach at Fukiagehama, South-West Kyushu Island, Japan, were examined. Ontogenetic changes in food preference were recognized in nine species ( Hypoatherina valenciennei, Lateolabrax japonicus, Trachurus japonicus, Sillago japonica, Sphyraena japonica, Paralichthys olivaceus, Heteromycteris japonica, Paraplagusia japonica, and Takifugu niphobles). A cluster analysis based on dietary overlaps showed that the sandy beach fish assemblage comprised six trophic groups (mysid, amphipod, zooplankton, juvenile fish, terrestrial insect, and mollusk feeders). Of these, the first three groups were the most abundantly represented, whereas the last two were represented by only a single species. These results indicated that epibenthic macrofauna, such as mysids and gammaridean amphipods, and zooplankton, were important food resources for the fish assemblage at the study site, but infaunal macrobenthos, such as polychaetes and bivalves, being relatively unimportant.

Implications of dredging induced changes in sediment particle size composition for the structure and function of marine benthic macrofaunal communities.

PubMed

Cooper, K M; Curtis, M; Wan Hussin, W M R; Barrio Froján, C R S; Defew, E C; Nye, V; Paterson, D M

2011-10-01

A meta-analysis approach was used to assess the effect of dredging induced changes in sediment composition, under different conditions of natural physical disturbance, for the structure and function of marine benthic macrofaunal communities. Results showed the sensitivity of macrofaunal communities increased as both the proportion of gravel increased and the level of natural physical disturbance decreased. These findings may be explained by the close association of certain taxa with the gravel fraction, and the influence of natural physical disturbance which, as it increases, tends to restrict the colonisation by these species. We conclude that maintaining the gravel content of surface sediments after dredging and, where practicable, locating extraction sites in areas of higher natural disturbance will minimise the potential for long-term negative impacts on the macrofauna. Crown Copyright © 2011. Published by Elsevier Ltd. All rights reserved.

Deep-Sea Benthic Footprint of the Deepwater Horizon Blowout

PubMed Central

Montagna, Paul A.; Baguley, Jeffrey G.; Cooksey, Cynthia; Hartwell, Ian; Hyde, Larry J.; Hyland, Jeffrey L.; Kalke, Richard D.; Kracker, Laura M.; Reuscher, Michael; Rhodes, Adelaide C. E.

2013-01-01

The Deepwater Horizon (DWH) accident in the northern Gulf of Mexico occurred on April 20, 2010 at a water depth of 1525 meters, and a deep-sea plume was detected within one month. Oil contacted and persisted in parts of the bottom of the deep-sea in the Gulf of Mexico. As part of the response to the accident, monitoring cruises were deployed in fall 2010 to measure potential impacts on the two main soft-bottom benthic invertebrate groups: macrofauna and meiofauna. Sediment was collected using a multicorer so that samples for chemical, physical and biological analyses could be taken simultaneously and analyzed using multivariate methods. The footprint of the oil spill was identified by creating a new variable with principal components analysis where the first factor was indicative of the oil spill impacts and this new variable mapped in a geographic information system to identify the area of the oil spill footprint. The most severe relative reduction of faunal abundance and diversity extended to 3 km from the wellhead in all directions covering an area about 24 km2. Moderate impacts were observed up to 17 km towards the southwest and 8.5 km towards the northeast of the wellhead, covering an area 148 km2. Benthic effects were correlated to total petroleum hydrocarbon, polycyclic aromatic hydrocarbons and barium concentrations, and distance to the wellhead; but not distance to hydrocarbon seeps. Thus, benthic effects are more likely due to the oil spill, and not natural hydrocarbon seepage. Recovery rates in the deep sea are likely to be slow, on the order of decades or longer. PMID:23950956

Trophic ecology of mullets during their spring migration in a European saltmarsh: A stable isotope study

NASA Astrophysics Data System (ADS)

Lebreton, Benoit; Richard, Pierre; Parlier, Emmanuel P.; Guillou, Gaël; Blanchard, Gérard F.

2011-03-01

Mullet populations are abundant in littoral waters throughout the world and play a significant role in organic matter fluxes. Mullets are opportunistic feeders: adults have frequently been shown to feed on primary producers (e.g. fresh or detrital plant material, microphytobenthos) but they may also feed on meiofauna. The population structure and stomach contents of mullets that colonize saltmarsh creeks in Aiguillon Bay (French Atlantic coast) were studied to determine if they use saltmarshes as a feeding ground in spring. Stable isotope analyses were carried out on mullets sampled to assess their diet during their spring migration. The mullet population was primarily composed of young-of-the-year (G0), 1 year-old (G1) of both Liza ramada and Liza aurata species and 3 year-old or older (G3+) L. ramada individuals. G0 and G3+ population densities increased during the spring period: catch per unit effort (CPUE) increased from 0.22 to 1.49 ind min -1 for the G0 age group; but stomach content analyses revealed that only G1 and G3+ feed in the saltmarsh. Isotopic signatures of G1 (spring: δ 13C: -14.8‰, δ 15N: 14.1‰) and G3+ mullets (spring: δ 13C: -16.9‰, δ 15N: 13.8‰) indicate that mullet growth is supported largely by primary consumers, such as benthic meiofauna or small macrofauna. Mullets are thus positioned at a much higher trophic level than true primary consumers.

Small benthic size classes along the N.W. European Continental Margin: spatial and temporal variability in activity and biomass

NASA Astrophysics Data System (ADS)

Pfannkuche, O.; Soltwedel, T.

1998-12-01

In the context of the European OMEX Programme this investigation focused on gradients in the biomass and activity of the small benthic size spectrum along a transect across the Goban Spur from the outer Celtic Sea into Porcupine Abyssal Plain. The effects of food pulses (seasonal, episodic) on this part of the benthic size spectrum were investigated. Sediments sampled during eight expeditions at different seasons covering a range from 200 m to 4800 m water depth were assayed with biochemical bulk measurements: determinations of chloroplastic pigment equivalents (CPE), the sum of chlorophyll a and its breakdown products, provide information concerning the input of phytodetrital matter to the seafloor; phospholipids were analyzed to estimate the total biomass of small benthic organisms (including bacteria, fungi, flagellata, protozoa and small metazoan meiofauna). A new term `small size class biomass' (SSCB) is introduced for the biomass of the smallest size classes of sediment-inhabiting organisms; the reduction of fluorescein-di-acetate (FDA) was determined to evaluate the potential activity of ester-cleaving bacterial exoenzymes in the sediment samples. At all stations benthic biomass was predominantly composed of the small size spectrum (90% on the shelf; 97-98% in the bathyal and abyssal parts of the transect). Small size class biomass (integrated over a 10 cm sediment column) ranged from 8 g C m -2 on the shelf to 2.1 g C m -2 on the adjacent Porcupine Abyssal Plain, exponentially decreasing with increasing water depth. However, a correlation between water depth and SSCB, macrofauna biomass as well as metazoan meiofauna biomass exhibited a significantly flatter slope for the small size classes in comparison to the larger organisms. CPE values indicated a pronounced seasonal cycle on the shelf and upper slope with twin peaks of phytodetrital deposition in mid spring and late summer. The deeper stations seem to receive a single annual flux maximum in late summer. SSCB and heterotrophic activity are significantly correlated to the amount of sediment-bound pigments. Seasonality in pigment concentrations is clearly followed by SSCB and activity. In contrast to macro- and megafauna which integrate over larger periods (months/years), the small benthic size classes, namely bacteria and foraminifera, proved to be the most reactive potential of the benthic communities to any perturbations on short time scales (days/weeks). The small size classes, therefore, occupy a key role in early diagenetic processes.

Ostracoda and Foraminifera associated with macrofauna of marginal marine origin in continental sabkha sediments of Tayma (NW Saudi Arabia)

NASA Astrophysics Data System (ADS)

Pint, Anna; Frenzel, Peter; Engel, Max; Plessen, Birgit; Melzer, Sandra; Brückner, Helmut

2016-04-01

The oasis Tayma in northwestern Saudi Arabia (27°38'N, 38°33'E) is well known for its rich archaeological heritage and also hosts a key sedimentary record of Holocene environmental change.The palaeontologically investigated material comes from two 5.5 m long sediment cores taken in the northeastern and central part of the sabkha and two outcrops of shoreline deposits at the northeastern and southwestern margin of a large lake. Microfossil-rich layers have an age of about 9.2-ca. 8 ka BP. The sandy and carbonate-dominated sediments contain autochthonous balanids, the gastropods Melanoides tuberculatus and hydrobiids as well as the foraminifers Ammonia tepida (Cushman, 1926), Quinqueloculina seminula (Linnaeus, 1758), and Flintionoides labiosa (d'Orbigny, 1839). This brackish water association is completed by partially mass-occurrence of Cyprideis torosa (JONES, 1850), an euryhaline and generally widely tolerant ostracod species. Only the smooth shelled morphotype littoralis occurs. The association indicates a large brackish water lake with temporary freshwater inflows. All species documented originate in the marginal marine environment of the Red or Mediterranean Sea within the intertidal zone and hence they are adapted for strong environmental changes. We assume negative water balance under arid climatic conditions as cause for the high salinity of this athalassic lake. Sieve-pore analyses and shell chemistry suppose a trend of increasing salinity towards the top of the studied microfossil-bearing sections. This pattern is confirmed by increasing test malformation ratios of foraminifers. The marine origin of the fauna is surprising in this area 250 km away from the sea in an altitude of about 800 m a.s.l. We assume an avian-mediated transport of eggs, larvae or even adult animals to this site. The brackish water character of the lake enabled a permanent settling of marginal marine foraminifers, ostracods and even macrofauna as gastropods and balanids. The studied microfauna, morphological and shell chemistry analyses reveal the athalassic but saline character of the palaeo-lake and indicate a more humid climate phase in the early Holocene of northwestern Saudi Arabia. Furthermore, the increasing salinity at the younger part of the sections confirms a climatic shift to drier conditions during the mid-Holocene. This study is a contribution to the research project "CLEAR - Holocene CLimatic Events of Northern ARabia" (https://clear2018.wordpress.com/).

The Cretaceous-Tertiary boundary biotic crisis in the Basque country

NASA Technical Reports Server (NTRS)

Lamolda, M. A.

1988-01-01

The Zumaya section has been selected as a classic locality for the study of the Cretaceous-Tertiary (K-T) boundary due to its richness in microfaune, macrofaune, and nannoflora. The sections present similar good conditions for the study of the K-T boundary. The sedimentary rocks of the Uppermost Maastrichtian from the Basque Country are purple or pink marls and marls-tones. Above it is found a clayed bed, 40 to 29 cm thick, grey or dark grey in its basal part, of Lowermost Danian age. Above there is alternation of micritic grey-pink limestones and thin clay beds of Dano-Montian age. The average sedimentation is 7 to 8 times higher during the Upper Maastrichtian than in the Dano-Montian. The macrofauna underwent a decrease since the Campanian and was not found in the last 11 m of the Zumaya section; it was associated with changes in paleoceanographic conditions and primary productivity of the oceans. The microfossil assemblages in the K-T transition allows the recognition of several phases of a complex crisis between two well established planktonic ecosystems. In the Mayaroensis Zone there is a stable ecosystem with 45 to 47 planktonic foraminifera species. The disappearance of A. mayaroensis starts a degradation of the ecosystem. The number of planktonic foraminiera species decreases between 20 and 45 percent. The next phase of the crisis was the result of main extinction events in the planktonic calcareous ecosystem. There are several cretaceous planktonic foraminifera species, probably reworked, whose numbers decrease upward. The next and last phase of the biotic crisis shows a diversification of the ecosystem; the number of planktonic foraminifera is 2 to 3 times higher than before and it is noted the first appearance of Tertiary nannoflora species, while Cretaceous species decrease and persisting species are still the main ones.

Effects of sub-seabed CO2 leakage: Short- and medium-term responses of benthic macrofaunal assemblages.

PubMed

Amaro, T; Bertocci, I; Queiros, A M; Rastelli, E; Borgersen, G; Brkljacic, M; Nunes, J; Sorensen, K; Danovaro, R; Widdicombe, S

2018-03-01

The continued rise in atmospheric carbon dioxide (CO 2 ) levels is driving climate change and temperature shifts at a global scale. CO 2 Capture and Storage (CCS) technologies have been suggested as a feasible option for reducing CO 2 emissions and mitigating their effects. However, before CCS can be employed at an industrial scale, any environmental risks associated with this activity should be identified and quantified. Significant leakage of CO 2 from CCS reservoirs and pipelines is considered to be unlikely, however direct and/or indirect effects of CO 2 leakage on marine life and ecosystem functioning must be assessed, with particular consideration given to spatial (e.g. distance from the source) and temporal (e.g. duration) scales at which leakage impacts could occur. In the current mesocosm experiment we tested the potential effects of CO 2 leakage on macrobenthic assemblages by exposing infaunal sediment communities to different levels of CO 2 concentration (400, 1000, 2000, 10,000 and 20,000 ppm CO 2 ), simulating a gradient of distance from a hypothetic leakage, over short-term (a few weeks) and medium-term (several months). A significant impact on community structure, abundance and species richness of macrofauna was observed in the short-term exposure. Individual taxa showed idiosyncratic responses to acidification. We conclude that the main impact of CO 2 leakage on macrofaunal assemblages occurs almost exclusively at the higher CO 2 concentration and over short time periods, tending to fade and disappear at increasing distance and exposure time. Although under the cautious perspective required by the possible context-dependency of the present findings, this study contributes to the cost-benefit analysis (environmental risk versus the achievement of the intended objectives) of CCS strategies. Copyright © 2018. Published by Elsevier Ltd.

Short-term post-mortality predation and scavenging and longer-term recovery after anoxia in the northern Adriatic Sea

NASA Astrophysics Data System (ADS)

Blasnig, M.; Riedel, B.; Zuschin, M.; Schiemer, L.; Stachowitsch, M.

2013-03-01

In the Mediterranean, the northern Adriatic Sea shows most features known to promote late-summer hypoxia and anoxia. These features, along with anthropogenic eutrophication and marine snow events, have led to repeated benthic mortalities here. The present study was designed to document the post-anoxia macrofauna dynamics. We deployed an underwater instrument to induce small-scale anoxia in situ (total area 0.5 m2). Two time-lapse camera deployments examined short-term scavenging of the moribund and dead organisms (multi-species clumps consisting of sponges and ascidians) over a 3-day period (August 2008: 71.5 h, September 2008: 67.5 h). Longer-term recovery (2 yr) in the same two plots was examined with an independent photo-series. Predators and scavengers arrived in a distinct sequence. The first to arrive were demersal (Gobius niger, Serranus hepatus) and benthopelagic fishes (Diplodus vulgaris, Pagellus erythrinus), followed by hermit crabs (Paguristes eremita, showing a clear day/night rhythm in presence) and gastropods (Hexaplex trunculus). This sequence of arrival is attributed to the relative speeds of the organisms and their densities. The scavengers remained in dense aggregations (e.g. up to 33 P. eremita individuals at one time) as long as the dead organisms were available. The whole sessile fauna was largely removed or consumed within 7 (August plot) and 13 (September plot) days after anoxia. No macroepibenthic recovery took place in the experimental plots one and two years after anoxia. This study underlines the sensitivity of this soft-bottom community and supports calls for reducing additional anthropogenic disturbances such as damaging commercial fishing practices that impede recolonization and threaten benthic community structure and function over the long-term.

Automated analysis of two-dimensional positions and body lengths of earthworms (Oligochaeta); MimizuTrack.

PubMed

Kodama, Naomi; Kimura, Toshifumi; Yonemura, Seiichiro; Kaneda, Satoshi; Ohashi, Mizue; Ikeno, Hidetoshi

2014-01-01

Earthworms are important soil macrofauna inhabiting almost all ecosystems. Their biomass is large and their burrowing and ingestion of soils alters soil physicochemical properties. Because of their large biomass, earthworms are regarded as an indicator of "soil heath". However, primarily because the difficulties in quantifying their behavior, the extent of their impact on soil material flow dynamics and soil health is poorly understood. Image data, with the aid of image processing tools, are a powerful tool in quantifying the movements of objects. Image data sets are often very large and time-consuming to analyze, especially when continuously recorded and manually processed. We aimed to develop a system to quantify earthworm movement from video recordings. Our newly developed program successfully tracked the two-dimensional positions of three separate parts of the earthworm and simultaneously output the change in its body length. From the output data, we calculated the velocity of the earthworm's movement. Our program processed the image data three times faster than the manual tracking system. To date, there are no existing systems to quantify earthworm activity from continuously recorded image data. The system developed in this study will reduce input time by a factor of three compared with manual data entry and will reduce errors involved in quantifying large data sets. Furthermore, it will provide more reliable measured values, although the program is still a prototype that needs further testing and improvement. Combined with other techniques, such as measuring metabolic gas emissions from earthworm bodies, this program could provide continuous observations of earthworm behavior in response to environmental variables under laboratory conditions. In the future, this standardized method will be applied to other animals, and the quantified earthworm movement will be incorporated into models of soil material flow dynamics or behavior in response to chemical substances present in the soil.

Two-dimensional pH distributions and dynamics in bioturbated marine sediments

NASA Astrophysics Data System (ADS)

Zhu, Qingzhi; Aller, Robert C.; Fan, Yanzhen

2006-10-01

The seafloor is the site of intense biogeochemical and mineral dissolution-precipitation reactions which generate strong gradients in pH near the sediment-overlying water interface. These gradients are usually measured in one-dimension vertically with depth. Two-dimensional pH distributions in marine sediments were examined at high resolution (65 × 65 μm pixel) and analytical precision over areas of ˜150 to 225 cm 2 using a newly developed pH planar fluorosensor. Dramatic three-dimensional gradients, complex heterogeneity, and dynamic changes of pH occur in the surficial zone of deposits inhabited by macrofauna. pH can vary by ±2 units horizontally as well as vertically over millimeter scales. pH minima zones often form in association with redoxclines within a few millimeters of inner burrow walls, and become more pronounced with time if burrows remain stable and irrigated for extended periods. Microenvironmental pH minima also form locally around decaying biomass and relict burrow tracks, and dissipate with time (˜5 d). H + concentrations and fluxes in sandy mud show complex acid-base reaction distributions with net H + fluxes around burrows up to ˜12 nmol cm -2 d -1 and maximum net reaction rates varying between -90 (consumption) to 120 (production) μM d -1 (˜90 nmol cm -1 d -1 burrow length). Acid producing zones that surround irrigated burrows are largely balanced by acid titration zones along inner burrow walls and outer radial boundaries. The geometry and scaling of pH microenvironments are functions of diagenetic reaction rates and three-dimensional transport patterns determined by sediment properties, such as diffusive tortuosity, and by benthic community characteristics such as the abundance, mobility, and size of infauna. Previously, undocumented biogeochemical phenomena such as low pH regions associated with in-filled relict biogenic structures and burrowing tracks are readily demonstrated by two-dimensional and time-dependent images of pH and sedimentary structure.

Effects of nutrient enrichment derived from fish farming activities on macroinvertebrate assemblages in a subtropical region of Hong Kong.

PubMed

Gao, Qin-Feng; Cheung, Kwok-Leung; Cheung, Siu-Gin; Shin, Paul K S

2005-01-01

To study the correlation between nutrient enrichment derived from fish farming activities and changes in macrobenthic assemblages, a one-year field study was conducted in Kau Sai Bay marine fish culture zone of Hong Kong. Bimonthly sediment samples were collected at six stations: two at the fish cages, two near the boundary of the fish culture area, and two reference sites further away from the culture area. Sediment physico-chemical characteristics in terms of silt/clay fraction, moisture content, total organic carbon (TOC), total Kjeldahl nitrogen (TKN) and total phosphorus (TP) were analyzed. The macrobenthos (>0.5 mm) present in the sediment were sorted, identified and enumerated. On average, TOC, TKN and TP levels at the fish cage stations were 82.8%, 128.5% and 1315.7% higher than those at the reference stations, respectively. As a result, the N:P molar ratio was greatly reduced from 8.75 at the reference stations to 1.83 at the fish cage stations. Univariate and multivariate analyses revealed that diversity of macrofauna was significantly reduced and community structure differed at the fish cage stations relative to the reference sites. The intermediary stations near the fish culture area showed a transitional state of disturbance. Faunal diversity was negatively correlated with nutrient level, reflecting the adverse impacts of nutrient enrichment derived from fish farming activities on the benthic assemblages. Whilst in subtropical Asia-Pacific trash fish is the major feed for fish culture resulting in a higher nutrient loading and nutrient ratio accumulated in the sediment beneath the fish rafts, the effects of nutrient enrichment on macrobenthic assemblages are comparable to that in temperate waters owing to relatively high sediment metabolism rate and smaller fish culture scale in Hong Kong.

Benthic foraminifera as indicators of pollution in high latitude marine environments

NASA Astrophysics Data System (ADS)

Dijkstra, N.; Junttila, J.; Husum, K.; Carroll, J.; Klitgaard-Kristensen, D.; Hald, M.

2012-04-01

An increasing number of studies demonstrate the potential of benthic foraminifera to characterize ecological status. However, the use of benthic foraminifera as bio-indicators has previously not been tested in high latitudes. This research contributes to the development of foraminifera as a bio-monitoring technique for the Arctic region, as industrial activities in this region will increase in the coming years. Surface sediments (0-1 cm) from sites close to gas fields in the SW Barents Sea were studied. In addition, to elucidate the range from less to very affected, surface sediments from the harbor of the town of Hammerfest (70° N) were studied. At least 300 living benthic foraminifera from the size fraction 100 µm-1 mm were counted and identified at species level. Pollution levels (heavy metals and persistent organic pollutants) and sediment properties (grainsize and TOC) were also analyzed. Pollution levels at the sea floor in the SW Barents Sea are of background to good level (level I-II) according to the definitions by the Water Framework Directorate (WFD). Benthic foraminiferal assemblages are influenced by natural environmental parameters such as water mass properties, water depth, nutrient availability, bottom current strength, and grain size. Surface sediments from the Hammerfest harbor are of moderate environmental status (WFD level II-III) based on heavy metal concentrations and of bad environmental status (WFD IV-V) based on persistent organic pollutant concentrations. Opportunistic benthic foraminifera are dominating the assemblages. The most polluted areas in the harbor are barren for foraminifera or have high amounts of deformed shells. In both environments the foraminiferal diversity of the samples, does not correspond to expected environmental status based on the pollution levels of the sediments. Environmental status classes, based on benthic foraminifera instead of macrofauna, would allow rapid analyses of the environmental impact of pollution.

Distributional patterns in an insect community inhabiting a sandy beach of Uruguay

NASA Astrophysics Data System (ADS)

Mourglia, Virginia; González-Vainer, Patricia; Defeo, Omar

2015-12-01

Most studies of sandy beach macrofauna have been restricted to semiterrestrial species and do not include insects when providing species richness and abundance estimates. Particularly, spatio-temporal patterns of community structure of the entomofauna inhabiting these ecosystems have been scarcely documented. This study assessed spatio-temporal distributional patterns of the night active entomofauna on a beach-dune system of Uruguay, including variations in species richness, abundance and diversity, and their relationship with environmental factors. A deconstructive taxonomic analysis was also performed, considering richness and abundance patterns separately for the most abundant insect Orders (Hymenoptera and Coleoptera) to better understand the factors which drive their patterns. We found clear temporal and across-shore patterns in the insect community inhabiting a land-ocean interface, which matched spatiotemporal variations in the environment. Abundance and species richness were highest in spring and summer, concurrently with high temperatures and low values of sediment moisture and compaction. Multivariate ordinations showed two well-defined species groups, which separated summer, autumn and spring samples from winter ones. Generalized Linear Models allowed us to describe a clear segregation in space of the most important orders of the insect community, with specific preferences for the terrestrial (Hymenoptera) and beach (Coleoptera) fringes. Hymenoptera preferred the dune zone, characterized by high elevation and low sand moisture and compaction levels, whereas Coleoptera preferred gentle slopes and fine and humid sands of the beach. Our results suggest that beach and dune ecosystems operate as two separate components in regard to their physical and biological features. The high values of species richness and abundance of insects reveal that this group has a more significant ecological role than that originally considered so far in sandy beach ecology.

Effects of earthworms on slopewash, surface runoff, and fine-litter transport on a humid-tropical forested hillslope in eastern Puerto Rico: Chapter G in Water quality and landscape processes of four watersheds in eastern Puerto Rico

USGS Publications Warehouse

Larsen, Matthew C.; Liu, Zhigang Liu; Zou, Xiaoming; Murphy, Sheila F.; Stallard, Robert F.

2012-01-01

Rainfall, slopewash (the erosion of soil particles), surface runoff, and fine-litter transport were measured in tropical wet forest on a hillslope in the Luquillo Experimental Forest, Puerto Rico, from February 1998 until April 2000. Slopewash data were collected using Gerlach troughs at eight plots, each 2 square meters in area. Earthworms were excluded by electroshocking from four randomly selected plots. The other four (control) plots were undisturbed. During the experiment, earthworm population in the electroshocked plots was reduced by 91 percent. At the end of the experiment, the electroshocked plots had 13 percent of earthworms by count and 6 percent by biomass as compared with the control plots. Rainfall during the sampling period (793 days) was 9,143 millimeters. Mean and maximum rainfall by sampling period (mean of 16 days) were 189 and 563 millimeters, respectively. Surface runoff averaged 0.6 millimeters and 1.2 millimeters by sampling period for the control and experimental plots, equal to 0.25 and 0.48 percent of mean rainfall, respectively. Disturbance of the soil environment by removal of earthworms doubled runoff and increased the transport (erosion) of soil and organic material by a factor of 4.4. When earthworms were removed, the erosion of mineral soil (soil mass left after ashing) and the transport of fine litter were increased by a factor of 5.3 and 3.4, respectively. It is assumed that increased runoff is a function of reduced soil porosity, resulting from decreased burrowing and reworking of the soil in the absence of earthworms. The background, or undisturbed, downslope transport of soil, as determined from the control plots, was 51 kilograms per hectare and the "disturbance" rate, determined from the experimental plots, was 261 kilograms per hectare. The background rate for downslope transport of fine litter was 71 kilograms per hectare and the disturbance rate was 246 kilograms per hectare. Data from this study indicate that the reduction in soil macrofauna population, in this case, earthworms, plays a key role in increasing runoff and soil erosion and, therefore, has important implications for forest and water management.

Spatial variability of macrobenthic zonation on exposed sandy beaches

NASA Astrophysics Data System (ADS)

Veiga, Puri; Rubal, Marcos; Cacabelos, Eva; Maldonado, Cristina; Sousa-Pinto, Isabel

2014-07-01

We analysed the consistence of vertical patterns of distribution (i.e. zonation) for macrofauna at different spatial scales on four intermediate exposed beaches in the North of Portugal. We tested the hypothesis that biological zonation on exposed sandy beaches would vary at the studied spatial scales. For this aim, abundance, diversity and structure of macrobenthic assemblages were examined at the scales of transect and beach. Moreover, the main environmental factors that could potentially drive zonation patterns were investigated. Univariate and multivariate analyses revealed that the number of biological zones ranged from two to three depending on the beach and from indistinct zonation to three zones at the scale of transect. Therefore, results support our working hypothesis because zonation patterns were not consistent at the studied spatial scales. The median particle size, sorting coefficient and water content were significantly correlated with zonation patterns of macrobenthic assemblages. However, a high degree of correlation was not reached when the total structure of the assemblage was considered.

Effects of an oil spill on benthic community production and respiration on subtropical intertidal sandflats.

PubMed

Lee, Li-Hua; Lin, Hsing-Juh

2013-08-15

This study determined effects of an oil spill on subtropical benthic community production and respiration by monitoring CO2 fluxes in benthic chambers on intertidal sandflats during emersion before and after an accidental spill. The oil spill decreased sediment chlorophyll a concentrations, altered benthic macrofaunal community, and affected ecological functioning by suppressing or even stopping microalgal production, increasing bacterial respiration, and causing a shift from an autotrophic system to a heterotrophic system. Effects of the oil spill on the macrofauna were more severe than on benthic microalgae, and affected sedentary infauna more than motile epifauna. Despite the oil spill's impact on the benthic community and carbon metabolism, the affected area appeared to return to normal in about 23 days. Our results suggest that the prompt response of benthic metabolism to exposure to petroleum hydrocarbons can serve as a useful indicator of the impact of an oil spill. Copyright © 2013 Elsevier Ltd. All rights reserved.

Effects of offshore platforms on soft-bottom macro-benthic assemblages: a case study in a Mediterranean gas field.

PubMed

Terlizzi, Antonio; Bevilacqua, Stanislao; Scuderi, Danilo; Fiorentino, Dario; Guarnieri, Giuseppe; Giangrande, Adriana; Licciano, Margherita; Felline, Serena; Fraschetti, Simonetta

2008-07-01

The exploitation of fossil fuels in the Mediterranean Sea will likely lead to an increase in the number of offshore platforms, a recognized threat for marine biodiversity. To date, in this basin, few attempts have been made to assess the impact of offshore gas and oil platforms on the biodiversity of benthic assemblages. Here, we adopted a structured experimental design coupled with high taxonomic resolution to outline putative effects of gas platforms on soft-bottom macrofauna assemblages in the North Ionian Sea. The analysis was based on a total of 20,295 specimens of 405 taxa, almost entirely identified at species level. Multivariate and univariate analyses showed idiosyncratic patterns of assemblage change with increasing distance from the platforms. Potential reasons underlying such inconsistency are analyzed and the view that structured experimental monitoring is a crucial tool to quantify the extent and magnitude of potential threats and to provide sound baseline information on biodiversity patterns is supported.

The relative significance of biological and physical disturbance: an example from intertidal and subtidal sandy bottom communities

NASA Astrophysics Data System (ADS)

Brey, Thomas

1991-10-01

The effects of biological disturbance caused by the lugworm Arenicola marina (L.) on the abundance of the macrobenthic fauna were investigated at three subtidal stations (0·5 m, 12 m and 19 m water depth) in Kiel Bay (western Baltic) and on an intertidal flat in the German Wadden Sea. Different effects of biological disturbance were observed (1) between funnel and cast of the lugworm burrow, (2) among stations, (3) between seasons, and (4) among taxa and groups of different living mode of the macrofauna. The strength of the impact of A. marina on the abundance of a certain macrobenthic species depends on three factors: (1) species behaviour and living mode, (2) A. marina activity, and (3) hydrodynamic conditions. In general, the most distinct effects were observed at the intertidal station during summer, followed by the two deeper subtidal stations. At the very shallow station, only weak effects were detected.

Functional diversity of benthic ciliate communities in response to environmental gradients in a wetland of Yangtze Estuary, China.

PubMed

Xu, Yuan; Fan, Xinpeng; Warren, Alan; Zhang, Liquan; Xu, Henglong

2018-02-01

Researches on the functional diversity of benthic ecosystems have mainly focused on macrofauna, and studies on functional structure of ciliate communities have been based only on trophic- or size-groups. Current research was carried out on the changing patterns of classical and functional diversity of benthic ciliates in response to environmental gradients at three sites in a wetland in Yangtze Estuary. The results showed that changes of environmental factors (e.g. salinity, sediment grain size and hydrodynamic conditions) in the Yangtze Estuary induce variability in species composition and functional trait distribution. Furthermore, increased species richness and diversity did not lead to significant changes in functional diversity due to functional redundancy. However, salt water intrusion of Yangtze Estuary during the dry season could cause reduced functional diversity of ciliate communities. Current study provides the first insight into the functional diversity of ciliate communities in response to environmental gradients. Copyright © 2018 Elsevier Ltd. All rights reserved.

The mangrove's contribution to people: Interdisciplinary pilot study of the Can Gio Mangrove Biosphere Reserve in Viet Nam

NASA Astrophysics Data System (ADS)

Cormier-Salem, Marie-Christine; Van Trai, Nguyen; Burgos, Ariadna; Durand, Jean-Dominique; Bettarel, Yvan; Klein, Judith; Duc Huy, Hoang; Panfili, Jacques

2017-10-01

The main objective of this pilot study, conducted in June 2015 in the Can Gio Mangrove Biosphere Reserve (Can Gio MBR, Viet Nam), was to develop an interdisciplinary approach to assess some key services provided by reforested mangroves subject to external pressures and varying management policies. We focused on the abundance of viruses, bacteria, endo- and epi- and macrofauna and the diversity of crabs in the mangrove and the exploitation of its resources. The main social finding was that the local inhabitants are aware of the levels of protection of the different zones within the Can Gio MBR and respect them. The core and the buffer zones seem to present a similar ecological status. Genotyping showed a low level of crab diversity although there were many different morphotypes. In the future, we need to understand the stakeholders' general perception of the biodiversity and environment changes by developing an integrated, multi-scale approach.

Quantitative distribution and functional groups of intertidal macrofaunal assemblages in Fildes Peninsula, King George Island, South Shetland Islands, Southern Ocean.

PubMed

Liu, Xiaoshou; Wang, Lu; Li, Shuai; Huo, Yuanzi; He, Peimin; Zhang, Zhinan

2015-10-15

To evaluate spatial distribution pattern of intertidal macrofauna, quantitative investigation was performed in January to February, 2013 around Fildes Peninsula, King George Island, South Shetland Islands. A total of 34 species were identified, which were dominated by Mollusca, Annelida and Arthropoda. CLUSTER analysis showed that macrofaunal assemblages at sand-bottom sites belonged to one group, which was dominated by Lumbricillus sp. and Kidderia subquadrata. Macrofaunal assemblages at gravel-bottom sites were divided into three groups while Nacella concinna was the dominant species at most sites. The highest values of biomass and Shannon-Wiener diversity index were found in gravel sediment and the highest value of abundance was in sand sediment of eastern coast. In terms of functional group, detritivorous and planktophagous groups had the highest values of abundance and biomass, respectively. Correlation analysis showed that macrofaunal abundance and biomass had significant positive correlations with contents of sediment chlorophyll a, phaeophorbide and organic matter. Copyright © 2015 Elsevier Ltd. All rights reserved.

Microbial biogeography of San Francisco Bay sediments

NASA Astrophysics Data System (ADS)

Lee, J. A.; Francis, C. A.

2014-12-01

The largest estuary on the west coast of North America, San Francisco Bay is an ecosystem of enormous biodiversity, and also enormous human impact. The benthos has experienced dredging, occupation by invasive species, and over a century of sediment input as a result of hydraulic mining. Although the Bay's great cultural and ecological importance has inspired numerous surveys of the benthic macrofauna, to date there has been almost no investigation of the microbial communities on the Bay floor. An understanding of those microbial communities would contribute significantly to our understanding of both the biogeochemical processes (which are driven by the microbiota) and the physical processes (which contribute to microbial distributions) in the Bay. Here, we present the first broad survey of bacterial and archaeal taxa in the sediments of the San Francisco Bay. We conducted 16S rRNA community sequencing of bacteria and archaea in sediment samples taken bimonthly for one year, from five sites spanning the salinity gradient between Suisun and Central Bay, in order to capture the effect of both spatial and temporal environmental variation on microbial diversity. From the same samples we also conducted deep sequencing of a nitrogen-cycling functional gene, nirS, allowing an assessment of evolutionary diversity at a much finer taxonomic scale within an important and widespread functional group of bacteria. We paired these sequencing projects with extensive geochemical metadata as well as information about macrofaunal distribution. Our data reveal a diversity of distinct biogeographical patterns among different taxa: clades ubiquitous across sites; clades that respond to measurable environmental drivers; and clades that show geographical site-specificity. These community datasets allow us to test the hypothesis that salinity is a major driver of both overall microbial community structure and community structure of the denitrifying bacteria specifically; and to assess whether patterns of diversity observed at the broadest of taxonomic scales also apply to patterns observed within a single extremely diverse gene (nirS). In sum, this project provides a first look at the forces driving the migration and selection of microbial communities in San Francisco Bay.

as response to seasonal variability

PubMed

Badano, Ernesto I; Labra, Fabio A; Martínez-Pérez, Cecilia G; Vergara, Carlos H

2016-03-01

Ecologists have been largely interested in the description and understanding of the power scaling relationships between body size and abundance of organisms. Many studies have focused on estimating the exponents of these functions across taxonomic groups and spatial scales, to draw inferences about the processes underlying this pattern. The exponents of these functions usually approximate -3/4 at geographical scales, but they deviate from this value when smaller spatial extensions are considered. This has led to propose that body size-abundance relationships at small spatial scales may reflect the impact of environmental changes. This study tests this hypothesis by examining body size spectra of benthic shrimps (Decapoda: Caridea) and snails (Gastropoda) in the Tamiahua lagoon, a brackish body water located in the Eastern coast of Mexico. We mea- sured water quality parameters (dissolved oxygen, salinity, pH, water temperature, sediment organic matter and chemical oxygen demand) and sampled benthic macrofauna during three different climatic conditions of the year (cold, dry and rainy season). Given the small size of most individuals in the benthic macrofaunal samples, we used body volume, instead of weight, to estimate their body size. Body size-abundance relationships of both taxonomic groups were described by tabulating data from each season into base-2 logarithmic body size bins. In both taxonomic groups, observed frequencies per body size class in each season were standardized to yield densities (i.e., individuals/m(3)). Nonlinear regression analyses were separately performed for each taxonomic group at each season to assess whether body size spectra followed power scaling functions. Additionally, for each taxonomic group, multiple regression analyses were used to determine whether these relationships varied among seasons. Our results indicated that, while body size-abundance relationships in both taxonomic groups followed power functions, the parameters defining the shape of these relationships varied among seasons. These variations in the parameters of the body size-abundance relationships seems to be related to changes in the abundance of individuals within the different body size classes, which seems to follow the seasonal changes that occur in the environmental conditions of the lagoon. Thus, we propose that these body size-abundance relation- ships are influenced by the frequency and intensity of environmental changes affecting this ecosystem.

A temporal analysis on the dynamics of deep-sea macrofauna: Influence of environmental variability off Catalonia coasts (western Mediterranean)

NASA Astrophysics Data System (ADS)

Mamouridis, V.; Cartes, J. E.; Parra, S.; Fanelli, E.; Saiz Salinas, J. I.

2011-04-01

A seasonal analysis of deep-sea infauna (macrobenthos) based on quantitative sampling was conducted over the Catalan Sea slope, within the Besòs canyon (at ˜550-600 m) and on its adjacent slope (at 800 m). Both sites were sampled in February, April, June-July and October 2007. Environmental variables influencing faunal distribution were also recorded in the sediment and sediment/water interface. Dynamics of macrobenthos at the two stations showed differences in biomass/abundance patterns and trophic structures. Biomass was higher inside the Besòs canyon than on the adjacent slope. The community was mostly dominated by surface-deposit feeding polychaetes (Ampharetidae, Paraonidae, Flabelligeridae) and crustaceans (amphipods such as Carangoliopsis spinulosa and Harpinia spp.) inside the canyon, while subsurface deposit feeders (mainly the sipunculan Onchnesoma steenstrupii) were dominant over the adjacent slope. The taxonomic composition in the suprabenthic assemblages of polychaetes, collected on the adjacent slope by a suprabenthic sledge, was clearly different from that collected by the box-corer. The suprabenthic assemblage was dominated by carnivorous forms (mainly Harmothoe sp. and Nephthys spp.) and linked to higher near-bottom turbidity. Inside Besòs a clear temporal succession of species was related to both food availability and quality and the proliferation of opportunistic species was consistent with higher variability in food sources (TOC, C/N, δ 13C) in comparison to adjacent slope. This was likely caused by a greater influence of terrigenous inputs from river discharges. Inside the canyon, Capitellidae, Spionidae and Flabelligeridae, in general considered as deposit feeders, were more abundant in June-July coinciding with a clear signal of terrigenous carbon (depleted δ 13C, high C/N) in the sediments. By contrast, during October and under conditions of high water turbidity and increases of TOM, carnivorous polychaetes (Glyceridae, Onuphidae) increased. Total macrobenthos biomass found over Catalonian slopes were higher than that found in the neighboring Toulon canyon, probably because the two canyons are influenced by different river inputs, connected with distinct terrigenous sources.

Delta-associated molluscan life and death assemblages in the northern Adriatic Sea: Implications for paleoecology, regional diversity and conservation.

PubMed

Weber, Kristina; Zuschin, Martin

2013-01-15

Life-death (LD) studies of shelly macrofauna are important to evaluate how well a fossil assemblage can reflect the original living community, but can also serve as a proxy for recent ecological shifts in marine habitats and in practice this has to be distinguished using taphonomic preservation pattern and estimates of time-averaging. It remains to be rigorously evaluated, however, how to distinguish between sources of LD disagreement. In addition, death assemblages (DAs) also preserve important information on regional diversity which is not available from single censuses of the life assemblages (LAs). The northern Adriatic Sea is an ecosystem under anthropogenic pressure, and we studied the distribution and abundance of living and dead bivalve and gastropod species in the physically stressful environments (tidal flat and shallow sublittoral soft bottoms) associated with the delta of the Isonzo River (Gulf of Trieste). Specifically we evaluated the fidelity of richness, evenness, abundance, habitat discrimination and beta diversity. A total of 10,740 molluscs from fifteen tidal flat and fourteen sublittoral sites were analyzed for species composition and distribution of living and dead molluscs. Of 78 recorded species, only eleven were numerically abundant. There were many more dead than living individuals and rarefied species richness in the DA was higher at all spatial scales, but the differences are lower in habitats and in the region than at individual stations. Evenness was always higher in death assemblages, and probably due to temporally more variable LAs the differences are stronger in the sublittoral habitats. Distinct assemblages characterized intertidal and sublittoral habitats, and the distribution and abundance of empty shells generally corresponded to that of the living species. Death assemblages have lower beta diversity than life assemblages, but empty shells capture compositional differences between habitats to a higher degree than living shells. More samples would be necessary to account for the diversity of living molluscs in the study area, which is, however, well recorded in the death assemblages. There is no indication of a major environmental change over the last decades in this area, but due to the long history of anthropogenic pressure here, such a potential impact might be preserved in historical layers of the deeper sedimentary record.

Benthic community structures in the North Sea

NASA Astrophysics Data System (ADS)

Heip, C.; Craeymeersch, J. A.

1995-03-01

Coherent assemblages of marine benthic species have been recognized from the early twentieth century, and the classical papers of Petersen (1914, 1918) were based on studies of limited areas in the North Sea. In 1986, a synoptic survey of the North Sea north to 57°N was undertaken by a group of ten laboratories from seven North Sea countries. The results of this survey have recently been published (Heip et al., 1992a, b; Künitzer et al., 1992; Huys et al., 1992), and some of the results are summarized in this paper. The analysis of the macrofauna is based on slightly more than 700 taxa. In general, the North Sea macrofauna consists of northern species extending south to the northern margins of the Dogger Bank, and southern species extending north to the 100 m depth line. The central North Sea is an area of overlap of southern and northern species, especially around the 70 m depth contour. Consistent groupings of species are recognized that were summarized in seven faunal groupings. Macrofaunal body weight, density and diversity increase linearly towards the north. Macrofaunal biomass for the whole area averages 7 g adwt. m-2 and decreases from south to north. Distribution patterns and trends within the meiofauna were very different. Nematodes, which are the dominant taxon overall, are least abundant in the sandy sediments of the Southern Bight, then increase to a maximum around 53° 30' N and slowly decrease again towards the north. Copepod density and diversity are highest in the Southern Bight, due to the presence of many interstitial species. A large number of species new to science were recorded by the North Sea Benthos Survey and about 1500 species are expected to occur. Copepods show very distinct assemblages according to water depth and sediment type. The contrasting patterns in latitudinal gradients of body weight and number of species of macro- and meiofauna can be only partially explained. Latitude and sediment characteristics, such as grain size and content in plant pigments, and water depth, determine part of the variance in species composition, density and biomass of the benthic fauna, but the patterns that are observed are different for different benthic groups, requiring careful consideration as to their use in biological monitoring procedures. Distributions are related to current patterns in the North Sea, annual temperature variations and availability of food. However, large parts of the variance in many parameters remain unexplained.

Effects of experimental otter trawling on benthic assemblages on Western Bank, northwest Atlantic Ocean

NASA Astrophysics Data System (ADS)

Kenchington, Ellen L. R.; Gilkinson, Kent D.; MacIsaac, Kevin G.; Bourbonnais-Boyce, Cynthia; Kenchington, Trevor J.; Smith, Stephen J.; Gordon, Donald C., Jr.

2006-10-01

The effects of otter trawling on a hard-bottom ecosystem on Western Bank on Canada's Scotian Shelf were examined experimentally from 1997 to 1999 with an asymmetrical BACI design. The site was located within an area that had been closed to fishing since 1987 to protect juvenile haddock. An experimental line was trawled 12-14 times on three separate occasions over a 20 month period. The benthic macrofauna and megafauna were sampled before and after trawling on both impact and control lines with both a grab and a photographic system. The 100 grab samples collected contained 341 taxa, primarily polychaetes, amphipods and molluscs, the majority (60%) of which were epifaunal. Biomass was dominated by the horse-mussel Modiolus modiolus, a long-lived bivalve, while the tube-building amphipod Ericthonius fasciatus was the most abundant species. Through the study period the benthos on the control lines showed little qualitative or quantitative change in individual taxa or community metrics. However, the abundance of 24 individual taxa (polychaetes, amphipods, echinoderms and molluscs) changed significantly, with the majority of these increasing. This resulted in a significantly different relative abundance of taxa between years as detected through ANOSIM. A significant change in relative biomass amongst the taxa was also observed. Trawling had few detectable immediate effects on the abundance or biomass of individual taxa and none on community composition. A few taxa, primarily a mixture of polychaetes and amphipods, decreased significantly after trawling and data from fish stomachs collected during the experiment (Kenchington, E.L., Gordon Jr., D.C., Bourbonnais-Boyce, C., MacIsaac, K.G., Gilkinson, K.D., McKeown, D.L., Vass, W.P., 2005. Effects of experimental otter trawling on the feeding of demersal fish on Western Bank, Nova Scotia. Amer. Fish. Soc. Symp. 41, 391-409) showed that some of these were scavenged by demersal fish. Fifteen taxa showed significant decreases after trawling when the cumulative effects of trawling were considered. As in the analyses of individual years the species affected were primarily high turn-over species such as polychaetes and amphipods. Dominance curves prepared for both control and impact samples before trawling in 1997 and after trawling in 1999 showed a marked decrease in the biomass values of the highest ranking taxa, particularly of the first species, M. modiolus, only on the impact line at the conclusion of the experiment. The proportion of epifaunal biomass also declined significantly from 90% to 77% on the impact line by the conclusion of the experiment. These changes are in part due to trawl-induced damage and subsequent predation by demersal fish of the top ranking species. Analysis of the photographic images showed that the three top-ranking species in terms of biomass, M. modiolus, the tube-building polychaete Thelepus cincinnatus, and the brachiopod Terebratulina septentrionalis, were visibly damaged more than other species by the trawl gear. Two of these species, M. modiolus and T. cincinnatus, were preyed upon by scavenging demersal fish. The use of multiple sampling devices at the experimental site (grab, photographic system reported here and trawl and fish stomachs reported by Kenchington, E.L., Gordon Jr., D.C., Bourbonnais-Boyce, C., MacIsaac, K.G., Gilkinson, K.D., McKeown, D.L., Vass, W.P., 2005. Effects of experimental otter trawling on the feeding of demersal fish on Western Bank, Nova Scotia. Amer. Fish. Soc. Symp. 41, 391-409) enabled us to link trawl-induced changes to the benthos to predation by demersal fish.

The Surales, Self-Organized Earth-Mound Landscapes Made by Earthworms in a Seasonal Tropical Wetland.

PubMed

Zangerlé, Anne; Renard, Delphine; Iriarte, José; Suarez Jimenez, Luz Elena; Adame Montoya, Kisay Lorena; Juilleret, Jérôme; McKey, Doyle

2016-01-01

The formation, functioning and emergent properties of patterned landscapes have recently drawn increased attention, notably in semi-arid ecosystems. We describe and analyze a set of similarly spectacular landforms in seasonal tropical wetlands. Surales landscapes, comprised of densely packed, regularly spaced mounds, cover large areas of the Orinoco Llanos. Although descriptions of surales date back to the 1940's, their ecology is virtually unknown. From data on soil physical and chemical properties, soil macrofauna, vegetation and aerial imagery, we provide evidence of the spatial extent of surales and how they form and develop. Mounds are largely comprised of earthworm casts. Recognizable, recently produced casts account for up to one-half of total soil mass. Locally, mounds are relatively constant in size, but vary greatly across sites in diameter (0.5-5 m) and height (from 0.3 m to over 2 m). This variation appears to reflect a chronosequence of surales formation and growth. Mound shape (round to labyrinth) varies across elevational gradients. Mounds are initiated when large earthworms feed in shallowly flooded soils, depositing casts that form 'towers' above water level. Using permanent galleries, each earthworm returns repeatedly to the same spot to deposit casts and to respire. Over time, the tower becomes a mound. Because each earthworm has a restricted foraging radius, there is net movement of soil to the mound from the surrounding area. As the mound grows, its basin thus becomes deeper, making initiation of a new mound nearby more difficult. When mounds already initiated are situated close together, the basin between them is filled and mounds coalesce to form larger composite mounds. Over time, this process produces mounds up to 5 m in diameter and 2 m tall. Our results suggest that one earthworm species drives self-organizing processes that produce keystone structures determining ecosystem functioning and development.

The Surales, Self-Organized Earth-Mound Landscapes Made by Earthworms in a Seasonal Tropical Wetland

PubMed Central

Iriarte, José; Suarez Jimenez, Luz Elena; Adame Montoya, Kisay Lorena; Juilleret, Jérôme; McKey, Doyle

2016-01-01

The formation, functioning and emergent properties of patterned landscapes have recently drawn increased attention, notably in semi-arid ecosystems. We describe and analyze a set of similarly spectacular landforms in seasonal tropical wetlands. Surales landscapes, comprised of densely packed, regularly spaced mounds, cover large areas of the Orinoco Llanos. Although descriptions of surales date back to the 1940’s, their ecology is virtually unknown. From data on soil physical and chemical properties, soil macrofauna, vegetation and aerial imagery, we provide evidence of the spatial extent of surales and how they form and develop. Mounds are largely comprised of earthworm casts. Recognizable, recently produced casts account for up to one-half of total soil mass. Locally, mounds are relatively constant in size, but vary greatly across sites in diameter (0.5–5 m) and height (from 0.3 m to over 2 m). This variation appears to reflect a chronosequence of surales formation and growth. Mound shape (round to labyrinth) varies across elevational gradients. Mounds are initiated when large earthworms feed in shallowly flooded soils, depositing casts that form ‘towers’ above water level. Using permanent galleries, each earthworm returns repeatedly to the same spot to deposit casts and to respire. Over time, the tower becomes a mound. Because each earthworm has a restricted foraging radius, there is net movement of soil to the mound from the surrounding area. As the mound grows, its basin thus becomes deeper, making initiation of a new mound nearby more difficult. When mounds already initiated are situated close together, the basin between them is filled and mounds coalesce to form larger composite mounds. Over time, this process produces mounds up to 5 m in diameter and 2 m tall. Our results suggest that one earthworm species drives self-organizing processes that produce keystone structures determining ecosystem functioning and development. PMID:27168157

Satellite remote sensing reveals a positive impact of living oyster reefs on microalgal biofilm development

NASA Astrophysics Data System (ADS)

Echappé, Caroline; Gernez, Pierre; Méléder, Vona; Jesus, Bruno; Cognie, Bruno; Decottignies, Priscilla; Sabbe, Koen; Barillé, Laurent

2018-02-01

Satellite remote sensing (RS) is routinely used for the large-scale monitoring of microphytobenthos (MPB) biomass in intertidal mudflats and has greatly improved our knowledge of MPB spatio-temporal variability and its potential drivers. Processes operating on smaller scales however, such as the impact of benthic macrofauna on MPB development, to date remain underinvestigated. In this study, we analysed the influence of wild Crassostrea gigas oyster reefs on MPB biofilm development using multispectral RS. A 30-year time series (1985-2015) combining high-resolution (30 m) Landsat and SPOT data was built in order to explore the relationship between C. gigas reefs and MPB spatial distribution and seasonal dynamics, using the normalized difference vegetation index (NDVI). Emphasis was placed on the analysis of a before-after control-impact (BACI) experiment designed to assess the effect of oyster killing on the surrounding MPB biofilms. Our RS data reveal that the presence of oyster reefs positively affects MPB biofilm development. Analysis of the historical time series first showed the presence of persistent, highly concentrated MPB patches around oyster reefs. This observation was supported by the BACI experiment which showed that killing the oysters (while leaving the physical reef structure, i.e. oyster shells, intact) negatively affected both MPB biofilm biomass and spatial stability around the reef. As such, our results are consistent with the hypothesis of nutrient input as an explanation for the MPB growth-promoting effect of oysters, whereby organic and inorganic matter released through oyster excretion and biodeposition stimulates MPB biomass accumulation. MPB also showed marked seasonal variations in biomass and patch shape, size and degree of aggregation around the oyster reefs. Seasonal variations in biomass, with higher NDVI during spring and autumn, were consistent with those observed on broader scales in other European mudflats. Our study provides the first multi-sensor RS satellite evidence of the promoting and structuring effect of oyster reefs on MPB biofilms.

Sediment phosphorus speciation and mobility under dynamic redox conditions

NASA Astrophysics Data System (ADS)

Parsons, Chris T.; Rezanezhad, Fereidoun; O'Connell, David W.; Van Cappellen, Philippe

2017-07-01

Anthropogenic nutrient enrichment has caused phosphorus (P) accumulation in many freshwater sediments, raising concerns that internal loading from legacy P may delay the recovery of aquatic ecosystems suffering from eutrophication. Benthic recycling of P strongly depends on the redox regime within surficial sediment. In many shallow environments, redox conditions tend to be highly dynamic as a result of, among others, bioturbation by macrofauna, root activity, sediment resuspension and seasonal variations in bottom-water oxygen (O2) concentrations. To gain insight into the mobility and biogeochemistry of P under fluctuating redox conditions, a suspension of sediment from a hypereutrophic freshwater marsh was exposed to alternating 7-day periods of purging with air and nitrogen gas (N2), for a total duration of 74 days, in a bioreactor system. We present comprehensive data time series of bulk aqueous- and solid-phase chemistry, solid-phase phosphorus speciation and hydrolytic enzyme activities demonstrating the mass balanced redistribution of P in sediment during redox cycling. Aqueous phosphate concentrations remained low ( ˜ 2.5 µM) under oxic conditions due to sorption to iron(III) oxyhydroxides. During anoxic periods, once nitrate was depleted, the reductive dissolution of iron(III) oxyhydroxides released P. However, only 4.5 % of the released P accumulated in solution while the rest was redistributed between the MgCl2 and NaHCO3 extractable fractions of the solid phase. Thus, under the short redox fluctuations imposed in the experiments, P remobilization to the aqueous phase remained relatively limited. Orthophosphate predominated at all times during the experiment in both the solid and aqueous phase. Combined P monoesters and diesters accounted for between 9 and 16 % of sediment particulate P. Phosphatase activities up to 2.4 mmol h-1 kg-1 indicated the potential for rapid mineralization of organic P (Po), in particular during periods of aeration when the activity of phosphomonoesterases was 37 % higher than under N2 sparging. The results emphasize that the magnitude and timing of internal P loading during periods of anoxia are dependent on both P redistribution within sediments and bottom-water nitrate concentrations.

Comparative biomass structure and estimated carbon flow in food webs in the deep Gulf of Mexico

NASA Astrophysics Data System (ADS)

Rowe, Gilbert T.; Wei, Chihlin; Nunnally, Clifton; Haedrich, Richard; Montagna, Paul; Baguley, Jeffrey G.; Bernhard, Joan M.; Wicksten, Mary; Ammons, Archie; Briones, Elva Escobar; Soliman, Yousra; Deming, Jody W.

2008-12-01

A budget of the standing stocks and cycling of organic carbon associated with the sea floor has been generated for seven sites across a 3-km depth gradient in the NE Gulf of Mexico, based on a series of reports by co-authors on specific biotic groups or processes. The standing stocks measured at each site were bacteria, Foraminifera, metazoan meiofauna, macrofauna, invertebrate megafauna, and demersal fishes. Sediment community oxygen consumption (SCOC) by the sediment-dwelling organisms was measured at each site using a remotely deployed benthic lander, profiles of oxygen concentration in the sediment pore water of recovered cores and ship-board core incubations. The long-term incorporation and burial of organic carbon into the sediments has been estimated using profiles of a combination of stable and radiocarbon isotopes. The total stock estimates, carbon burial, and the SCOC allowed estimates of living and detrital carbon residence time within the sediments, illustrating that the total biota turns over on time scales of months on the upper continental slope but this is extended to years on the abyssal plain at 3.6 km depth. The detrital carbon turnover is many times longer, however, over the same depths. A composite carbon budget illustrates that total carbon biomass and associated fluxes declined precipitously with increasing depth. Imbalances in the carbon budgets suggest that organic detritus is exported from the upper continental slope to greater depths offshore. The respiration of each individual "size" or functional group within the community has been estimated from allometric models, supplemented by direct measurements in the laboratory. The respiration and standing stocks were incorporated into budgets of carbon flow through and between the different size groups in hypothetical food webs. The decline in stocks and respiration with depth were more abrupt in the larger forms (fishes and megafauna), resulting in an increase in the relative predominance of smaller sizes (bacteria and meiofauna) at depth. Rates and stocks in the deep northern GoM appeared to be comparable to other continental margins where similar comparisons have been made.

Biological Control beneath the Feet: A Review of Crop Protection against Insect Root Herbivores.

PubMed

Kergunteuil, Alan; Bakhtiari, Moe; Formenti, Ludovico; Xiao, Zhenggao; Defossez, Emmanuel; Rasmann, Sergio

2016-11-29

Sustainable agriculture is certainly one of the most important challenges at present, considering both human population demography and evidence showing that crop productivity based on chemical control is plateauing. While the environmental and health threats of conventional agriculture are increasing, ecological research is offering promising solutions for crop protection against herbivore pests. While most research has focused on aboveground systems, several major crop pests are uniquely feeding on roots. We here aim at documenting the current and potential use of several biological control agents, including micro-organisms (viruses, bacteria, fungi, and nematodes) and invertebrates included among the macrofauna of soils (arthropods and annelids) that are used against root herbivores. In addition, we discuss the synergistic action of different bio-control agents when co-inoculated in soil and how the induction and priming of plant chemical defense could be synergized with the use of the bio-control agents described above to optimize root pest control. Finally, we highlight the gaps in the research for optimizing a more sustainable management of root pests.

Biological Control beneath the Feet: A Review of Crop Protection against Insect Root Herbivores

PubMed Central

Kergunteuil, Alan; Bakhtiari, Moe; Formenti, Ludovico; Xiao, Zhenggao; Defossez, Emmanuel; Rasmann, Sergio

2016-01-01

Sustainable agriculture is certainly one of the most important challenges at present, considering both human population demography and evidence showing that crop productivity based on chemical control is plateauing. While the environmental and health threats of conventional agriculture are increasing, ecological research is offering promising solutions for crop protection against herbivore pests. While most research has focused on aboveground systems, several major crop pests are uniquely feeding on roots. We here aim at documenting the current and potential use of several biological control agents, including micro-organisms (viruses, bacteria, fungi, and nematodes) and invertebrates included among the macrofauna of soils (arthropods and annelids) that are used against root herbivores. In addition, we discuss the synergistic action of different bio-control agents when co-inoculated in soil and how the induction and priming of plant chemical defense could be synergized with the use of the bio-control agents described above to optimize root pest control. Finally, we highlight the gaps in the research for optimizing a more sustainable management of root pests. PMID:27916820

Listeria monocytogenes, a down-to-earth pathogen

PubMed Central

Vivant, Anne-Laure; Garmyn, Dominique; Piveteau, Pascal

2013-01-01

Listeria monocytogenes is the causative agent of the food-borne life threatening disease listeriosis. This pathogenic bacterium received much attention in the endeavor of deciphering the cellular mechanisms that underlie the onset of infection and its ability to adapt to the food processing environment. Although information is available on the presence of L. monocytogenes in many environmental niches including soil, water, plants, foodstuff and animals, understanding the ecology of L. monocytogenes in outdoor environments has received less attention. Soil is an environmental niche of pivotal importance in the transmission of this bacterium to plants and animals. Soil composition, microbial communities and macrofauna are extrinsic edaphic factors that direct the fate of L. monocytogenes in the soil environment. Moreover, farming practices may further affect its incidence. The genome of L. monocytogenes presents an extensive repertoire of genes encoding transport proteins and regulators, a characteristic of the genome of ubiquitous bacteria. Postgenomic analyses bring new insights in the process of soil adaptation. In the present paper focussing on soil, we review these extrinsic and intrinsic factors that drive environmental adaptation of L. monocytogenes. PMID:24350062

Listeria monocytogenes, a down-to-earth pathogen.

PubMed

Vivant, Anne-Laure; Garmyn, Dominique; Piveteau, Pascal

2013-01-01

Listeria monocytogenes is the causative agent of the food-borne life threatening disease listeriosis. This pathogenic bacterium received much attention in the endeavor of deciphering the cellular mechanisms that underlie the onset of infection and its ability to adapt to the food processing environment. Although information is available on the presence of L. monocytogenes in many environmental niches including soil, water, plants, foodstuff and animals, understanding the ecology of L. monocytogenes in outdoor environments has received less attention. Soil is an environmental niche of pivotal importance in the transmission of this bacterium to plants and animals. Soil composition, microbial communities and macrofauna are extrinsic edaphic factors that direct the fate of L. monocytogenes in the soil environment. Moreover, farming practices may further affect its incidence. The genome of L. monocytogenes presents an extensive repertoire of genes encoding transport proteins and regulators, a characteristic of the genome of ubiquitous bacteria. Postgenomic analyses bring new insights in the process of soil adaptation. In the present paper focussing on soil, we review these extrinsic and intrinsic factors that drive environmental adaptation of L. monocytogenes.

Initial colonization, erosion and accretion of coral substrate

NASA Astrophysics Data System (ADS)

Davies, Peter J.; Hutchings, Patricia A.

1983-08-01

Blocks cut from Porites lutea were laid on the fore reef slope, reef flat and a lagoonal patch reef at Lizard Island, in the Northern Great Barrier Reef, and replicates removed from each environment at intervals of three months over a period of one and a half years. Variations in bioeroders and bioaccretors were noted. Microfaunas are far more numerous than macrofaunas as block colonizers; the principal borers are polychaete worms, whereas encrusters are molluscs, bryozoans, serpulids and solitary corals. The reef slope is more readily colonised by microfauna pioneer communities than are the other areas. All the environments exhibit a change from cirratulids to either sabellids or spionids (polydorids) over the length of the experiment. Accretion occurred on all blocks during the experiment, with significant differences detectable between environments; both reef slope and reef flat blocks showed weight increases of 9 10% whereas blocks from the patch reef showed increases of 15%. Annual erosion rates produced by polychaete worms are 0.694 kg m-2 year-1 (reef front), 0.843 kg m-2 year-1 (reef flat) and 1.788 kg m-2 year-1 (patch reef).

Adaptations to Hydrothermal Vent Life in Kiwa tyleri, a New Species of Yeti Crab from the East Scotia Ridge, Antarctica.

PubMed

Thatje, Sven; Marsh, Leigh; Roterman, Christopher Nicolai; Mavrogordato, Mark N; Linse, Katrin

2015-01-01

Hydrothermal vents in the Southern Ocean are the physiologically most isolated chemosynthetic environments known. Here, we describe Kiwa tyleri sp. nov., the first species of yeti crab known from the Southern Ocean. Kiwa tyleri belongs to the family Kiwaidae and is the visually dominant macrofauna of two known vent sites situated on the northern and southern segments of the East Scotia Ridge (ESR). The species is known to depend on primary productivity by chemosynthetic bacteria and resides at the warm-eurythermal vent environment for most of its life; its short-range distribution away from vents (few metres) is physiologically constrained by the stable, cold waters of the surrounding Southern Ocean. Kiwa tylerihas been shown to present differential life history adaptations in response to this contrasting thermal environment. Morphological adaptations specific to life in warm-eurythermal waters, as found on - or in close proximity of - vent chimneys, are discussed in comparison with adaptations seen in the other two known members of the family (K. hirsuta, K. puravida), which show a preference for low temperature chemosynthetic environments.

Macrofaunal assemblages from mud volcanoes in the Gulf of Cadiz: abundance, biodiversity and diversity partitioning across spatial scales

NASA Astrophysics Data System (ADS)

Cunha, M. R.; Rodrigues, C. F.; Génio, L.; Hilário, A.; Ravara, A.; Pfannkuche, O.

2012-12-01

The Gulf of Cadiz is an extensive seepage area in the South Iberian Margin (NE Atlantic) encompassing over 40 mud volcanoes (MVs) at depths ranging from 200 to 4000 m. The area has a long geologic history and a central biogeographic location with a complex circulation assuring oceanographic connectivity with the Mediterranean Sea, Equatorial and Northern Atlantic regions. The geodynamics of the region promotes a notorious diversity in the seep regime despite the relatively low fluxes of hydrocarbon-rich gases. We analyse quantitative samples taken during the cruises TTR14, TTR15 and MSM01-03 in seven mud volcanoes grouped into Shallow MVs (Mercator: 350 m, Kidd: 500 m, Meknès: 700 m) and Deep MVs (Captain Arutyunov: 1300 m, Carlos Ribeiro: 2200 m, Bonjardim: 3000 m, Porto: 3900 m) and two additional reference sites (ca. 550 m). Macrofauna (retained by a 500 μm sieve) was identified to species level whenever possible. The samples yielded modest abundances (70-1567 ind. per 0.25 m2) but a number of species among the highest ever reported for cold seeps. Among the 366 recorded species, 22 were symbiont-hosting bivalves (Thyasiridae, Vesicomyidae, Solemyidae) and tubeworms (Siboglinidae). The multivariate analyses indicated significant differences between Shallow and Deep MVs: The environmental conditions at the Shallow MVs makes them highly permeable to the penetration of background fauna leading to high diversity of the attendant assemblages (H': 2.92-3.94; ES(100): 28.3-45.0; J': 0.685-0.881). The Deep MVs showed, in general, contrasting features but were more heterogeneous (H': 1.41-3.06; ES(100): 10.5-30.5; J': 0.340-0.852) and often dominated by one or more siboglinid species. The rarefaction curves confirmed the differences in biodiversity of Deep and Shallow MVs as well as the approximation of the latter to the reference sites. The Bray-Curtis dissimilarity demonstrated the high β-diversity of the assemblages, especially in pairwise comparisons involving samples from the deeper MVs. Diversity partitioning assessed for species richness, Hurlbert's expected number of species and Shannon-Wiener index confirmed the high β-diversity across different spatial scales (within MVs, between MVs, between Deep and Shallow MVs). We suggest that historical and contemporary factors with differential synergies at different depths contribute to the high α-, β- and γ-diversity of the mud volcano faunal assemblages in the Gulf of Cadiz.

Macrofaunal assemblages from mud volcanoes in the Gulf of Cadiz: abundance, biodiversity and diversity partitioning across spatial scales

NASA Astrophysics Data System (ADS)

Cunha, M. R.; Rodrigues, C. F.; Génio, L.; Hilário, A.; Ravara, A.; Pfannkuche, O.

2013-04-01

The Gulf of Cadiz is an extensive seepage area in the south Iberian margin (NE Atlantic) encompassing over 40 mud volcanoes (MVs) at depths ranging from 200 to 4000 m. The area has a long geologic history and a central biogeographic location with a complex circulation ensuring oceanographic connectivity with the Mediterranean Sea, equatorial and North Atlantic regions. The geodynamics of the region promotes a notorious diversity in the seep regime despite the relatively low fluxes of hydrocarbon-rich gases. We analyse quantitative samples taken during the cruises TTR14, TTR15 and MSM01-03 in seven mud volcanoes grouped into Shallow MVs (Mercator: 350 m, Kidd: 500 m, Meknès: 700 m) and Deep MVs (Captain Arutyunov: 1300 m, Carlos Ribeiro: 2200 m, Bonjardim: 3000 m, Porto: 3900 m) and two additional Reference sites (ca. 550 m). Macrofauna (retained by a 500 μm sieve) was identified to species level whenever possible. The samples yielded modest abundances (70-1567 individuals per 0.25 m2), but the local and regional number of species is among the highest ever reported for cold seeps. Among the 366 recorded species, 22 were symbiont-hosting bivalves (Thyasiridae, Vesicomyidae, Solemyidae) and tubeworms (Siboglinidae). The multivariate analyses supported the significant differences between Shallow and Deep MVs: The environmental conditions at the Shallow MVs make them highly permeable to the penetration of background fauna leading to high diversity of the attendant assemblages (H': 2.92-3.94; ES(100): 28.3-45.0; J': 0.685-0.881). The Deep MV assemblages showed, in general, contrasting features but were more heterogeneous (H': 1.41-3.06; ES(100): 10.5-30.5; J': 0.340-0.852) and often dominated by one or more siboglinid species. The rarefaction curves confirmed the differences in biodiversity of Deep and Shallow MVs as well as the convergence of the latter to the Reference sites. The Bray-Curtis dissimilarity demonstrated the high β-diversity of the assemblages, especially in pairwise comparisons involving samples from the Deep MVs. Diversity partitioning assessed for species richness, Hurlbert's expected number of species and Shannon-Wiener index confirmed the high β-diversity across different spatial scales (within MVs, between MVs, between Deep and Shallow MVs). We suggest that historical and contemporary factors with differential synergies at different depths contribute to the high α-, β- and γ-diversity of the mud volcano faunal assemblages in the Gulf of Cadiz.

The vesicomyid bivalve habitat at cold seeps supports heterogeneous and dynamic macrofaunal assemblages

NASA Astrophysics Data System (ADS)

Guillon, Erwan; Menot, Lénaïck; Decker, Carole; Krylova, Elena; Olu, Karine

2017-02-01

The high biodiversity found at cold seeps, despite elevated concentrations of methane and hydrogen sulfide, is attributed to multiple sources of habitat heterogeneity. In addition to geological and geochemical processes, biogenic habitats formed by large symbiont-bearing taxa, such as bivalves and siboglinid tubeworms, or by microbial mats drive the biodiversity of small-sized fauna. However, because these habitat-forming species also depend on geochemical gradients, the respective influence of abiotic and biotic factors in structuring associated macrofaunal communities is often unresolved. The giant pockmark Regab located at 3200 m depth on the Congo margin is characterized by different fluid-flow regimes, providing a mosaic of the most common biogenic habitats encountered at seeps: microbial mats, mussel beds, and vesicomyid clam beds; the latter being distributed along a gradient of environmental conditions from the center to the periphery of the pockmark. Here, we examined the structure of macrofaunal communities in biogenic habitats formed in soft sediment to (1) determine the influence of the habitats on the associated macrofaunal communities (inter-habitat comparison), (2) describe how macrofaunal communities vary among vesicomyid clam beds (intra-habitat comparison) and (3) assess the inter-annual variation in vesicomyid beds based on repeated sampling at a three-year interval. The highest densities were found in the microbial mat communities in intermediate fluid-flow areas, but they had low diversity - also observed in the sediment close to mussel beds. In contrast, vesicomyid beds harbored the highest diversity. The vesicomyid beds did not show a homogeneous macrofaunal community across sampled areas; instead, density and composition of macrofauna varied according to the location of the beds inside the pockmark. The clam bed sampled in the most active, central part of the pockmark resembled bacterial mat communities by the presence of highly sulfide-tolerant species living at the sediment surface, along with vesicomyid juveniles. This similarity suggests a gradual change in community composition from mats to clam beds. Inter-annual comparisons of the different clam beds highlighted that the most active central site had a more variable community than its peripheral counterparts. Finally, a rapid shift in community structure, particularly in polychaete families, in experimentally reduced oxygen concentrations in the central part of Regab, suggests that high beta-diversity communities can withstand intense variation in geochemical conditions. These community dynamics are likely related to the diversity and to the plasticity of the vesicomyids themselves, because they can cope with high spatial and temporal environmental variability at a very local scale.

Digestate and ash as alternatives to conventional fertilisers: Benefits and threats to soil biota

NASA Astrophysics Data System (ADS)

Marshall, Rachel; Lag-Brotons, Alfonso J.; Herbert, Ben; Hurst, Lois; Ostle, Nick; Dodd, Ian C.; Quinton, John; Surridge, Ben; Aiouache, Farid; Semple, Kirk T.

2017-04-01

Recovering energy and nutrients from waste offers opportunities to tackle issues of energy and food security whilst simultaneously improving waste management. Waste materials from the bioenergy industry potentially contain valuable resources for use in agriculture and there is growing evidence to suggest that the use of digestate, from anaerobic digestion, and biomass ash from incineration processes could contribute to improving soil health and nutrition. The work presented here is part of the Adding Value to Ash and Digestate (AVAnD) project which looks at the impacts of digestate and ash blends on soil fertility, crop yields and soil health. Whilst increased crop productivity is one of the essential indicators of the success of these alternative soil amendments; it is important that the impacts on soil biological function is understood. Field and lab experiments were conducted with a number of different fertiliser treatments, including conventional fertiliser (urea and superphosphate), digestate from two contrasting feedstocks, ash material and ash-digestate blends. Looking across different biological scales from soil microbe to soil macro-fauna, this work examines the benefits and threats to soil biota arising from the use of ash-digestate fertilisers in agriculture. Measurements of microbial respiration and biomass (by chloroform fumigation) and community composition (by phospholipid fatty acid analysis) were made at different timescales (days/weeks). Data from these studies demonstrates that none of the soil amendments decreased microbial activity or biomass in the short term (t= 1 month). Additions of both conventional fertilisers and the fertilisers derived from waste stimulated microbial activity with significantly higher respiration observed from the digestate based treatments. Digestate-based treatments also resulted in higher soil microbial biomass and differential effects were observed between digestate amendments with and without ash. These results will be discussed in the context of microbial community change in response to the amendments. At the macro-fauna scale, effects of amendments on earthworm (Eisenia fetida and Lumbricus terrestris) health were assessed using 14 day toxicity assays (4 application rates between 85-340 kgN.ha-1) and with 48 hour avoidance tests. In general, the addition of digestate-based fertilisers resulted in no observable toxic effects and earthworms did not significantly avoid these materials when compared to a conventional fertiliser. However, earthworms mortality was observed with one of the ash-digestate blends applied at 340 kgN.ha-1, potentially linked to changes in soil pH and elements speciation .It is therefore crucial that the effects of the amendments on soil properties, and the implications this has for soil communities at all scales, is understood to ensure sustainable soil management in agriculture.

Multiple stressors, nonlinear effects and the implications of climate change impacts on marine coastal ecosystems.

PubMed

Hewitt, Judi E; Ellis, Joanne I; Thrush, Simon F

2016-08-01

Global climate change will undoubtedly be a pressure on coastal marine ecosystems, affecting not only species distributions and physiology but also ecosystem functioning. In the coastal zone, the environmental variables that may drive ecological responses to climate change include temperature, wave energy, upwelling events and freshwater inputs, and all act and interact at a variety of spatial and temporal scales. To date, we have a poor understanding of how climate-related environmental changes may affect coastal marine ecosystems or which environmental variables are likely to produce priority effects. Here we use time series data (17 years) of coastal benthic macrofauna to investigate responses to a range of climate-influenced variables including sea-surface temperature, southern oscillation indices (SOI, Z4), wind-wave exposure, freshwater inputs and rainfall. We investigate responses from the abundances of individual species to abundances of functional traits and test whether species that are near the edge of their tolerance to another stressor (in this case sedimentation) may exhibit stronger responses. The responses we observed were all nonlinear and some exhibited thresholds. While temperature was most frequently an important predictor, wave exposure and ENSO-related variables were also frequently important and most ecological variables responded to interactions between environmental variables. There were also indications that species sensitive to another stressor responded more strongly to weaker climate-related environmental change at the stressed site than the unstressed site. The observed interactions between climate variables, effects on key species or functional traits, and synergistic effects of additional anthropogenic stressors have important implications for understanding and predicting the ecological consequences of climate change to coastal ecosystems. © 2015 John Wiley & Sons Ltd.

Early diagenesis in the sediments of the Congo deep-sea fan dominated by massive terrigenous deposits: Part II - Iron-sulfur coupling

NASA Astrophysics Data System (ADS)

Taillefert, Martial; Beckler, Jordon S.; Cathalot, Cécile; Michalopoulos, Panagiotis; Corvaisier, Rudolph; Kiriazis, Nicole; Caprais, Jean-Claude; Pastor, Lucie; Rabouille, Christophe

2017-08-01

Deep-sea fans are well known depot centers for organic carbon that should promote sulfate reduction. At the same time, the high rates of deposition of unconsolidated metal oxides from terrigenous origin may also promote metal-reducing microbial activity. To investigate the eventual coupling between the iron and sulfur cycles in these environments, shallow sediment cores (< 50 cm) across various channels and levees in the Congo River deep-sea fan ( 5000 m) were profiled using a combination of geochemical methods. Interestingly, metal reduction dominated suboxic carbon remineralization processes in most of these sediments, while dissolved sulfide was absent. In some 'hotspot' patches, however, sulfate reduction produced large sulfide concentrations which supported chemosynthetic-based benthic megafauna. These environments were characterized by sharp geochemical boundaries compared to the iron-rich background environment, suggesting that FeS precipitation efficiently titrated iron and sulfide from the pore waters. A companion study demonstrated that methanogenesis was active in the deep sediment layers of these patchy ecosystems, suggesting that sulfate reduction was promoted by alternative anaerobic processes. These highly reduced habitats could be fueled by discrete, excess inputs of highly labile natural organic matter from Congo River turbidites or by exhumation of buried sulfide during channel flank erosion and slumping. Sulfidic conditions may be maintained by the mineralization of decomposition products from local benthic macrofauna or bacterial symbionts or by the production of more crystalline Fe(III) oxide phases that are less thermodynamically favorable than sulfate reduction in these bioturbated sediments. Overall, the iron and sulfur biogeochemical cycling in this environment is unique and much more similar to a coastal ecosystem than a deep-sea environment.

Pedogenetic processes in anthrosols with pretic horizon (Amazonian Dark Earth) in Central Amazon, Brazil.

PubMed

Macedo, Rodrigo S; Teixeira, Wenceslau G; Corrêa, Marcelo M; Martins, Gilvan C; Vidal-Torrado, Pablo

2017-01-01

Anthrosols known as Amazonian Dark Earth (ADE) have borne witness to the intensification of sedentary patterns and the demographic increase in Central Amazon. As a result, a recurring pattern has been observed of mounds with ADE arising from domestic activities and the disposal of waste. The objective of this research was to demonstrate the relationship of these anthropic activities with pedogenetic formation processes of ADE in the municipality of Iranduba, Brazil. Disturbed and undisturbed soil samples were taken from two areas of ADE (pretic horizon) and from a non-anthropic pedon. Physical, chemical, micromorphological and SEM-EDS analyses were performed. The coarse material of the pretic horizons consisted predominantly of quartz, iron nodules, ceramics and charcoal fragments, and the fine material is organo-mineral. There was a direct relationship between the color of pretic horizons and the number of charcoal fragments. The thickness of the ADE results from the redistribution of charcoal at depth through bioturbation, transforming subsurface horizons into anthropic horizons. ADE presents granular microaggregates of geochemical and zoogenetic origin. Degradation of iron nodules is intensified in pretic horizons, promoting a reverse pedogenic process contributing to the xanthization process. Surprisingly the anthropic activities also favor clay dispersion and argilluviation; clay coatings on the ceramic fragments and in the pores demonstrate that this is a current process. Processes identified as contributing to ADE genesis included: i) addition of organic residues and ceramic artifacts (cumulization) with the use of fire; ii) mechanical action of humans, roots and macrofauna (bioturbation); iii) melanization of deeper horizons as a result of bioturbation; iv) argilluviation and degradation of iron nodules. This study offers new support to archaeological research in respect to ADE formation processes in Central Amazon and confirmed the hypothesis that ancient anthropic activities may trigger and/or accelerate pedogenetic processes previously credited only to natural causes.

Contrasting effects of ecosystem engineering by the cordgrass Spartina maritima and the sandprawn Callianassa kraussi in a marine-dominated lagoon

NASA Astrophysics Data System (ADS)

Pillay, D.; Branch, G. M.; Dawson, J.; Henry, D.

2011-01-01

Ecosystem engineering by plants and animals significantly influences community structure and the physico-chemical characteristics of marine habitats. In this paper we document the contrasting effects of ecosystem engineering by the cordgrass Spartina maritima and the burrowing sandprawn Callianassa kraussi on physico-chemical characteristics, microflora, macrofaunal community structure and morphological attributes in the high shore intertidal sandflats of Langebaan Lagoon, a marine-dominated system on the west coast of South Africa. Comparisons were made at six sites in the lagoon within Spartina and Callianassa beds, and in a "bare zone" of sandflat between these two habitats that lacks both sandprawns and cordgrass. Sediments in Spartina habitats were consolidated by the root-shoot systems of the cordgrass, leading to low sediment penetrability, while sediments in beds of C. kraussi were more penetrable, primarily due to the destabilising effects of sandprawn bioturbation. Sediments in the "bare zone" had intermediate to low values of penetrability. Sediment organic content was lowest in bare zones and greatest in Spartina beds, while sediment chl- a levels were greatest on bare sand, but were progressively reduced in the Spartina and Callianassa beds. These differences among habitats induced by ecosystem engineering in turn affected the macrofauna. Community structure was different between all three habitats sampled, with species richness being surprisingly greater in Callianassa beds than either the bare zone or Spartina beds. In general, the binding of surface sediments by the root systems of Spartina favoured rigid-bodied, surface-dwelling and tube-building species, while the destabilising effect of bioturbation by C. kraussi favoured burrowing species. The contrasting effects of these ecosystem engineers suggest that they play important roles in increasing habitat heterogeneity. Importantly, the role of bioturbation by C. kraussi in enhancing macrofaunal richness was unexpected. By loosening sediments, reducing anoxia and enhancing organic content, C. kraussi may engineer these high shore habitats to ameliorate environmental stresses or increase food availability.

Organic matter exploitation in a highly turbid environment: Planktonic food web in the Charente estuary, France

NASA Astrophysics Data System (ADS)

Modéran, Julien; David, Valérie; Bouvais, Pierre; Richard, Pierre; Fichet, Denis

2012-02-01

Estuaries are highly dynamic systems where multiple organic matter sources coexist and where complex biogeochemical processes greatly affect their fate. Although zooplankton plays a key role of in the energy fluxes between primary sources and exploited macrofauna, there is still a critical lack of field information concerning the spatio-temporal variability of the trophic pathways supporting its high biomasses in estuaries. From January 2007 to January 2008, suspended matter, microphytobenthos and zooplankton were sampled along the salinity gradient of the Charente estuary to determine their carbon and nitrogen stable isotope composition. The relative homogeneity of the δ 13C values of particulate organic matter (POM) all along the estuary (-23.6 to -26.5‰ except in March and June, ˜ -28.5‰) was attributed to physical mixing of marine and terrestrially derived organic matter with the great load of tidally resuspended particles. The five zooplankton taxa analysed displayed a wide range of δ 13C (from -34.9 to -17.4‰) and δ 15N values (3.4-15.2‰) over the year, providing strong evidence for high selectivity toward different organic matter sources and reinforcing the idea that a spatio-temporal succession of species assemblages lead to multiple trophic pathways and may stabilize the estuarine trophic network. The high δ 15N values of Eurytemora affinis in the maximum turbidity zone were believed to reflect a higher carnivorous tendency as a functional response to the strong decrease of phytoplankton availability. Conversely, Acartia spp. appeared unable to change their diet in the same way and was thus unable to colonize upstream areas. Stable isotope analysis also revealed that Mesopodopsis slabberi mostly relied on fresh phytoplankton and microphytobenthos while Neomysis integer presented a clear carnivorous tendency toward copepods, at least during the warm period. Additionally evidence was provided for passive (downstream advection of freshwater cladocerans with river runoffs) and active (coast-estuary seasonal migration of M. slabberi) longitudinal movements in estuarine organisms.

Pedogenetic processes in anthrosols with pretic horizon (Amazonian Dark Earth) in Central Amazon, Brazil

PubMed Central

Macedo, Rodrigo S.; Teixeira, Wenceslau G.; Corrêa, Marcelo M.; Martins, Gilvan C.

2017-01-01

Anthrosols known as Amazonian Dark Earth (ADE) have borne witness to the intensification of sedentary patterns and the demographic increase in Central Amazon. As a result, a recurring pattern has been observed of mounds with ADE arising from domestic activities and the disposal of waste. The objective of this research was to demonstrate the relationship of these anthropic activities with pedogenetic formation processes of ADE in the municipality of Iranduba, Brazil. Disturbed and undisturbed soil samples were taken from two areas of ADE (pretic horizon) and from a non-anthropic pedon. Physical, chemical, micromorphological and SEM-EDS analyses were performed. The coarse material of the pretic horizons consisted predominantly of quartz, iron nodules, ceramics and charcoal fragments, and the fine material is organo-mineral. There was a direct relationship between the color of pretic horizons and the number of charcoal fragments. The thickness of the ADE results from the redistribution of charcoal at depth through bioturbation, transforming subsurface horizons into anthropic horizons. ADE presents granular microaggregates of geochemical and zoogenetic origin. Degradation of iron nodules is intensified in pretic horizons, promoting a reverse pedogenic process contributing to the xanthization process. Surprisingly the anthropic activities also favor clay dispersion and argilluviation; clay coatings on the ceramic fragments and in the pores demonstrate that this is a current process. Processes identified as contributing to ADE genesis included: i) addition of organic residues and ceramic artifacts (cumulization) with the use of fire; ii) mechanical action of humans, roots and macrofauna (bioturbation); iii) melanization of deeper horizons as a result of bioturbation; iv) argilluviation and degradation of iron nodules. This study offers new support to archaeological research in respect to ADE formation processes in Central Amazon and confirmed the hypothesis that ancient anthropic activities may trigger and/or accelerate pedogenetic processes previously credited only to natural causes. PMID:28542442

Multiscale patterns in the diversity and organization of benthic intertidal fauna among French Atlantic estuaries

NASA Astrophysics Data System (ADS)

Blanchet, Hugues; Gouillieux, Benoît; Alizier, Sandrine; Amouroux, Jean-Michel; Bachelet, Guy; Barillé, Anne-Laure; Dauvin, Jean-Claude; de Montaudouin, Xavier; Derolez, Valérie; Desroy, Nicolas; Grall, Jacques; Grémare, Antoine; Hacquebart, Pascal; Jourde, Jérôme; Labrune, Céline; Lavesque, Nicolas; Meirland, Alain; Nebout, Thiebaut; Olivier, Frédéric; Pelaprat, Corine; Ruellet, Thierry; Sauriau, Pierre-Guy; Thorin, Sébastien

2014-07-01

Based on a parallel sampling conducted during autumn 2008, a comparative study of the intertidal benthic macrofauna among 10 estuarine systems located along the Channel and Atlantic coasts of France was performed in order to assess the level of fauna similarity among these sites and to identify possible environmental factors involved in the observed pattern at both large (among sites) and smaller (benthic assemblages) scales. More precisely this study focused on unraveling the observed pattern of intertidal benthic fauna composition and diversity observed at among-site scale by exploring both biotic and abiotic factors acting at the among- and within-site scales. Results showed a limited level of similarity at the among-site level in terms of intertidal benthic fauna composition and diversity. The observed pattern did not fit with existing transitional water classification methods based on fish or benthic assemblages developed in the frame of the European Water Framework Directive (WFD). More particularly, the coastal plain estuaries displayed higher among-site similarity compared to ria systems. These coastal plain estuaries were characterized by higher influence of river discharge, lower communication with the ocean and high suspended particulate matter levels. On the other hand, the ria-type systems were more dissimilar and different from the coastal plain estuaries. The level of similarity among estuaries was mainly linked to the relative extent of the intertidal "Scrobicularia plana-Cerastoderma edule" and "Tellina tenuis" or "Venus" communities as a possible consequence of salinity regime, suspended matter concentrations and fine particles supply with consequences on the trophic functioning, structure and organization of benthic fauna. Despite biogeographical patterns, the results also suggest that, in the context of the WFD, these estuaries should only be compared on the basis of the most common intertidal habitat occurring throughout all estuarine systems and that the EUNIS biotope classification might be used for this purpose. In addition, an original inverse relation between γ-diversity and area was shown; however, its relevance might be questioned.

Abiotic and biotic factors associated with the presence of Anopheles arabiensis immatures and their abundance in naturally occurring and man-made aquatic habitats

PubMed Central

2012-01-01

Background Anopheles arabiensis (Diptera: Culicidae) is a potential malaria vector commonly present at low altitudes in remote areas in Reunion Island. Little attention has been paid to the environmental conditions driving larval development and abundance patterns in potential habitats. Two field surveys were designed to determine whether factors that discriminate between aquatic habitats with and without An. arabiensis larvae also drive larval abundance, comparatively in man-made and naturally occurring habitats. Methods In an initial preliminary survey, a representative sample of aquatic habitats that would be amenable to an intensive long-term study were selected and divided into positive and negative sites based on the presence or absence of Anopheles arabiensis larvae. Subsequently, a second survey was prompted to gain a better understanding of biotic and abiotic drivers of larval abundance, comparatively in man-made and naturally occurring habitats in the two studied locations. In both surveys, weekly sampling was performed to record mosquito species composition and larval density within individual habitats, as well as in situ biological characteristics and physico-chemical properties. Results Whilst virtually any stagnant water body could be a potential breeding ground for An. arabiensis, habitats occupied by their immatures had different structural and biological characteristics when compared to those where larvae were absent. Larval occurrence seemed to be influenced by flow velocity, macrofauna diversity and predation pressure. Interestingly, the relative abundance of larvae in man-made habitats (average: 0.55 larvae per dip, 95%CI [0.3–0.7]) was significantly lower than that recorded in naturally occurring ones (0.74, 95%CI [0.5–0.8]). Such differences may be accounted for in part by varying pressures that could be linked to a specific habitat. Conclusions If the larval ecology of An. arabiensis is in general very complex and factors affecting breeding site productivity sometimes not easy to highlight, our results, however, highlight lower populations of An. arabiensis immatures compared to those reported in comparable studies conducted in the African continent. Overall, this low larval abundance, resulting from both abiotic and biotic factors, suggests that vector control measures targeting larval habitats are likely to be successful in Reunion, but these could be better implemented by taking environmental variability into account. PMID:22608179

Metagenomic investigation of the geologically unique Hellenic Volcanic Arc reveals a distinctive ecosystem with unexpected physiology: Metagenomic investigation of the Hellenic Volcanic Arc

DOE Office of Scientific and Technical Information (OSTI.GOV)

Oulas, Anastasis; Polymenakou, Paraskevi N.; Seshadri, Rekha

Hydrothermal vents represent a deep, hot, aphotic biosphere where chemosynthetic primary producers, fuelled by chemicals from Earth's subsurface, form the basis of life. In this study, we examined microbial mats from two distinct volcanic sites within the Hellenic Volcanic Arc (HVA). The HVA is geologically and ecologically unique, with reported emissions of CO 2-saturated fluids at temperatures up to 220°C and a notable absence of macrofauna. Metagenomic data reveals highly complex prokaryotic communities composed of chemolithoautotrophs, some methanotrophs, and to our surprise, heterotrophs capable of anaerobic degradation of aromatic hydrocarbons. Our data suggest that aromatic hydrocarbons may indeed be amore » significant source of carbon in these sites, and instigate additional research into the nature and origin of these compounds in the HVA. Novel physiology was assigned to several uncultured prokaryotic lineages; most notably, a SAR406 representative is attributed with a role in anaerobic hydrocarbon degradation. This dataset, the largest to date from submarine volcanic ecosystems, constitutes a significant resource of novel genes and pathways with potential biotechnological applications.« less

Metagenomic investigation of the geologically unique Hellenic Volcanic Arc reveals a distinctive ecosystem with unexpected physiology: Metagenomic investigation of the Hellenic Volcanic Arc

DOE PAGES

Oulas, Anastasis; Polymenakou, Paraskevi N.; Seshadri, Rekha; ...

2015-12-21

Hydrothermal vents represent a deep, hot, aphotic biosphere where chemosynthetic primary producers, fuelled by chemicals from Earth's subsurface, form the basis of life. In this study, we examined microbial mats from two distinct volcanic sites within the Hellenic Volcanic Arc (HVA). The HVA is geologically and ecologically unique, with reported emissions of CO 2-saturated fluids at temperatures up to 220°C and a notable absence of macrofauna. Metagenomic data reveals highly complex prokaryotic communities composed of chemolithoautotrophs, some methanotrophs, and to our surprise, heterotrophs capable of anaerobic degradation of aromatic hydrocarbons. Our data suggest that aromatic hydrocarbons may indeed be amore » significant source of carbon in these sites, and instigate additional research into the nature and origin of these compounds in the HVA. Novel physiology was assigned to several uncultured prokaryotic lineages; most notably, a SAR406 representative is attributed with a role in anaerobic hydrocarbon degradation. This dataset, the largest to date from submarine volcanic ecosystems, constitutes a significant resource of novel genes and pathways with potential biotechnological applications.« less

Factors Influencing Biofilm Formation in Streams: Bacterial Colonization, Detachment and Transport

NASA Astrophysics Data System (ADS)

Leff, L.

2005-05-01

Surfaces in aquatic systems develop biofilms containing microorganisms embedded in complex extracellular matrices. Properties of the surface, water, and colonizing organisms impact biofilm formation. Biofilm features, physical disturbance, and interactions between macro- and microscopic organisms, in turn, influence detachment. In spite of the importance of biofilms, much remains unknown about factors controlling biofilms in streams and other natural environments. Experiments were conducted in the laboratory and field to examine factors influencing surface colonization, and subsequent biofilm formation, and detachment. Microscopy methods, fluorescent in situ hybridization and confocal laser microscopy, were used to examine responses, including abundance of different taxa and biofilm depth. From these experiments, we determined that different taxa differ in their colonization ability based on properties like extracellular polysaccharide production and surface features, like hydrophobicity and that water chemistry, such as magnesium concentration, plays an important role. Moreover, detachment varies among taxa and with environmental conditions and may be enhanced by activities of macrofauna. Variation in detachment, in turn, influences bacterial transport and subsequent re-attachment. Overall, examination of attachment, detachment, and interactions in biofilms allows us to begin to understand how environmental conditions may impact the function of these communities in aquatic systems.

Isolation, Characterization, and Polyaromatic Hydrocarbon Degradation Potential of Aerobic Bacteria from Marine Macrofaunal Burrow Sediments and Description of Lutibacterium anuloederans gen. nov., sp. nov., and Cycloclasticus spirillensus sp. nov.†

PubMed Central

Chung, W. K.; King, G. M.

2001-01-01

Two new polyaromatic hydrocarbon-degrading marine bacteria have been isolated from burrow wall sediments of benthic macrofauna by using enrichments on phenanthrene. Strain LC8 (from a polychaete) and strain M4-6 (from a mollusc) are aerobic and gram negative and require sodium chloride (>1%) for growth. Both strains can use 2- and 3-ring polycyclic aromatic hydrocarbons as their sole carbon and energy sources, but they are nutritionally versatile. Physiological and phylogenetic analyses based on 16S ribosomal DNA sequences suggest that strain M4-6 belongs to the genus Cycloclasticus and represents a new species, Cycloclasticus spirillensus sp. nov. Strain LC8 appears to represent a new genus and species, Lutibacterium anuloederans gen. nov., sp. nov., within the Sphingomonadaceae. However, when inoculated into sediment slurries with or without exogenous phenanthrene, only L. anuloederans appeared to sustain a significant phenanthrene uptake potential throughout a 35-day incubation. In addition, only L. anuloederans appeared to enhance phenanthrene degradation in heavily contaminated sediment from Little Mystic Cove, Boston Harbor, Boston, Mass. PMID:11722910

Taxonomic and functional patterns of macrobenthic communities on a high-Arctic shelf: A case study from the Laptev Sea

NASA Astrophysics Data System (ADS)

Kokarev, V. N.; Vedenin, A. A.; Basin, A. B.; Azovsky, A. I.

2017-11-01

The studies of functional structure of high-Arctic Ecosystems are scarce. We used data on benthic macrofauna from 500-km latitudinal transect in the eastern Laptev Sea, from the Lena delta to the continental shelf break, to describe spatial patterns in species composition, taxonomic and functional structure in relation to environmental factors. Both taxonomy-based approach and Biological Trait analysis yielded similar results and showed general depth-related gradient in benthic diversity and composition. This congruence between taxonomical and functional dimensions of community organization suggests that the same environmental factors (primarily riverine input and regime of sedimentation) have similar effect on both community structure and functioning. BTA also revealed a distinct functional structure of stations situated at the Eastern Lena valley, with dominance of motile, burrowing sub-surface deposit-feeders and absence of sedentary tube-dwelling forms. The overall spatial distribution of benthic assemblages corresponds well to that described there in preceding decades, evidencing the long-term stability of bottom ecosystem. Strong linear relationship between species and traits diversity, however, indicates low functional redundancy, which potentially makes the ecosystem susceptible to a species loss or structural shifts.

Northward range extension of an endemic soil decomposer with a distinct trophic position.

PubMed

Melody, Carol; Schmidt, Olaf

2012-12-23

Ecological niche theory asserts that invading species become established only if introduced propagules survive stochastic mortality and can exploit resources unconsumed by resident species. Because their transportation is not controlled by plant health or biosecurity regulations, soil macrofauna decomposers, including earthworms are probably introduced frequently into non-native soils. Yet even with climatic change, exotic earthworm species from southern Europe have not been reported to become established in previously glaciated areas of northern Europe that already have trophically differentiated earthworm communities of 'peregrine' species. We discovered established populations of the earthworm Prosellodrilus amplisetosus (Lumbricidae), a member of a genus endemic to southern France, in six habitats of an urban farm in Dublin, Ireland, about 1000 km north of the genus's endemic range. Not only was P. amplisetosus the dominant endogeic (geophagous) earthworm species in two habitats, it also occupied a significantly different trophic position from the resident species, as evinced by stable isotope ratio analysis. The suggested ability of this non-native species to feed on and assimilate isotopically more enriched soil carbon (C) and nitrogen fractions that are inaccessible to resident species portends potential implications of decomposer range expansions for soil functioning including C sequestration.

Biodiversity on the Rocks: Macrofauna Inhabiting Authigenic Carbonate at Costa Rica Methane Seeps

PubMed Central

Levin, Lisa A.; Mendoza, Guillermo F.; Grupe, Benjamin M.; Gonzalez, Jennifer P.; Jellison, Brittany; Rouse, Greg; Thurber, Andrew R.; Waren, Anders

2015-01-01

Carbonate communities: The activity of anaerobic methane oxidizing microbes facilitates precipitation of vast quantities of authigenic carbonate at methane seeps. Here we demonstrate the significant role of carbonate rocks in promoting diversity by providing unique habitat and food resources for macrofaunal assemblages at seeps on the Costa Rica margin (400–1850 m). The attendant fauna is surprisingly similar to that in rocky intertidal shores, with numerous grazing gastropods (limpets and snails) as dominant taxa. However, the community feeds upon seep-associated microbes. Macrofaunal density, composition, and diversity on carbonates vary as a function of seepage activity, biogenic habitat and location. The macrofaunal community of carbonates at non-seeping (inactive) sites is strongly related to the hydrography (depth, temperature, O2) of overlying water, whereas the fauna at sites of active seepage is not. Densities are highest on active rocks from tubeworm bushes and mussel beds, particularly at the Mound 12 location (1000 m). Species diversity is higher on rocks exposed to active seepage, with multiple species of gastropods and polychaetes dominant, while crustaceans, cnidarians, and ophiuroids were better represented on rocks at inactive sites. Macro-infauna (larger than 0.3 mm) from tube cores taken in nearby seep sediments at comparable depths exhibited densities similar to those on carbonate rocks, but had lower diversity and different taxonomic composition. Seep sediments had higher densities of ampharetid, dorvilleid, hesionid, cirratulid and lacydoniid polychaetes, whereas carbonates had more gastropods, as well as syllid, chrysopetalid and polynoid polychaetes. Stable isotope signatures and metrics: The stable isotope signatures of carbonates were heterogeneous, as were the food sources and nutrition used by the animals. Carbonate δ13Cinorg values (mean = -26.98‰) ranged from -53.3‰ to +10.0‰, and were significantly heavier than carbonate δ13Corg (mean = -33.83‰), which ranged from -74.4‰ to -20.6‰. Invertebrates on carbonates had average δ13C (per rock) = -31.0‰ (range -18.5‰ to -46.5‰) and δ15N = 5.7‰ (range -4.5‰ to +13.4‰). Average δ13C values did not differ between active and inactive sites; carbonate fauna from both settings depend on chemosynthesis-based nutrition. Community metrics reflecting trophic diversity (SEAc, total Hull Area, ranges of δ13C and δ15N) and species packing (mean distance to centroid, nearest neighbor distance) also did not vary as a function of seepage activity or site. However, distinct isotopic signatures were observed among related, co-occurring species of gastropods and polychaetes, reflecting intense microbial resource partitioning. Overall, the substrate and nutritional heterogeneity introduced by authigenic seep carbonates act to promote diverse, uniquely adapted assemblages, even after seepage ceases. The macrofauna in these ecosystems remain largely overlooked in most surveys, but are major contributors to biodiversity of chemosynthetic ecosystems and the deep sea in general. PMID:26158723

Macrofaunal colonization across the Indian margin oxygen minimum zone

NASA Astrophysics Data System (ADS)

Levin, L. A.; McGregor, A. L.; Mendoza, G. F.; Woulds, C.; Cross, P.; Witte, U.; Gooday, A. J.; Cowie, G.; Kitazato, H.

2013-11-01

There is a growing need to understand the ability of bathyal assemblages to recover from disturbance and oxygen stress, as human activities and expanding oxygen minimum zones increasingly affect deep continental margins. The effects of a pronounced oxygen minimum zone (OMZ) on slope benthic community structure have been studied on every major upwelling margin; however, little is known about the dynamics or resilience of these benthic populations. To examine the influence of oxygen and phytodetritus on short-term settlement patterns, we conducted colonization experiments at 3 depths on the West Indian continental margin. Four colonization trays were deployed at each depth for 4 days at 542 and 802 m (transect 1-16°58' N) and for 9 days at 817 and 1147 m (transect 2-17°31' N). Oxygen concentrations ranged from 0.9 μM (0.02 mL L-1) at 542 m to 22 μM (0.5 mL L-1) at 1147 m. All trays contained local defaunated sediments; half of the trays at each depth also contained 13C/15N-labeled phytodetritus mixed into the sediments. Sediment cores were collected between 535 m and 1140 m from 2 cross-margin transects for analysis of ambient (source) macrofaunal (>300 μm) densities and composition. Ambient macrofaunal densities ranged from 0 ind m-2 (at 535-542 m) to 7400 ind m-2, with maximum values on both transects at 700-800 m. Macrofaunal colonizer densities ranged from 0 ind m-2 at 542 m, where oxygen was lowest, to average values of 142 ind m-2 at 800 m, and 3074 ind m-2 at 1147 m, where oxygen concentration was highest. These were equal to 4.3 and 151% of the ambient community at 800 m and 1147 m, respectively. Community structure of settlers showed no response to the presence of phytodetritus. Increasing depth and oxygen concentration, however, significantly influenced the community composition and abundance of colonizing macrofauna. Polychaetes constituted 92.4% of the total colonizers, followed by crustaceans (4.2%), mollusks (2.5%), and echinoderms (0.8%). The majority of colonizers were found at 1147 m; 88.5% of these were Capitella sp., although they were rare in the ambient community. Colonists at 800 and 1147 m also included ampharetid, spionid, syllid, lumbrinerid, cirratulid, cossurid and sabellid polychaetes. Consumption of 13C/15N-labeled phytodetritus was observed for macrofaunal foraminifera (too large to be colonizers) at the 542 and 802/817 m sites, and by metazoan macrofauna mainly at the deepest, better oxygenated sites. Calcareous foraminifera (Uvigerina, Hoeglundina sp.), capitellid polychaetes and cumaceans were among the major phytodetritus consumers. These preliminary experiments suggest that bottom-water oxygen concentrations may strongly influence ecosystem services on continental margins, as reflected in rates of colonization by benthos and colonizer processing of carbon following disturbance. They may also provide a window into future patterns of settlement on the continental slope as the world's oxygen minimum zones expand.

Soil Quality Indexing Strategies for Evaluating Sugarcane Expansion in Brazil

PubMed Central

Cherubin, Maurício R.; Karlen, Douglas L.; Cerri, Carlos E. P.; Franco, André L. C.; Tormena, Cássio A.; Davies, Christian A.; Cerri, Carlos C.

2016-01-01

Increasing demand for biofuel has intensified land-use change (LUC) for sugarcane (Saccharum officinarum) expansion in Brazil. Assessments of soil quality (SQ) response to this LUC are essential for quantifying and monitoring sustainability of sugarcane production over time. Since there is not a universal methodology for assessing SQ, we conducted a field-study at three sites within the largest sugarcane-producing region of Brazil to develop a SQ index (SQI). The most common LUC scenario (i.e., native vegetation to pasture to sugarcane) was evaluated using six SQI strategies with varying complexities. Thirty eight soil indicators were included in the total dataset. Two minimum datasets were selected: one using principal component analysis (7 indicators) and the other based on expert opinion (5 indicators). Non-linear scoring curves were used to interpret the indicator values. Weighted and non-weighted additive methods were used to combine individual indicator scores into an overall SQI. Long-term conversion from native vegetation to extensive pasture significantly decreased overall SQ. In contrast, conversion from pasture to sugarcane had no significant impact on overall SQ at the regional scale, but site-specific responses were found. In general, sugarcane production improved chemical attributes (i.e., higher macronutrient levels and lower soil acidity); however it has negative effects on physical and biological attributes (i.e., higher soil compaction and structural degradation as well as lower soil organic carbon (SOC), abundance and diversity of macrofauna and microbial activity). Overall, we found that simple, user-friendly strategies were as effective as more complex ones for identifying SQ changes. Therefore, as a protocol for SQ assessments in Brazilian sugarcane areas, we recommend using a small number of indicators (e.g., pH, P, K, Visual Evaluation of Soil Structure -VESS scores and SOC concentration) and proportional weighting to reflect chemical, physical and biological processes within the soil. Our SQ evaluations also suggest that current approaches for expanding Brazilian sugarcane production by converting degraded pasture land to cropland can be a sustainable strategy for meeting increasing biofuel demand. However, management practices that alleviate negative impacts on soil physical and biological indicators must be prioritized within sugarcane producing areas to prevent unintentional SQ degradation over time. PMID:26938642

Soil Quality Indexing Strategies for Evaluating Sugarcane Expansion in Brazil.

PubMed

Cherubin, Maurício R; Karlen, Douglas L; Cerri, Carlos E P; Franco, André L C; Tormena, Cássio A; Davies, Christian A; Cerri, Carlos C

2016-01-01

Increasing demand for biofuel has intensified land-use change (LUC) for sugarcane (Saccharum officinarum) expansion in Brazil. Assessments of soil quality (SQ) response to this LUC are essential for quantifying and monitoring sustainability of sugarcane production over time. Since there is not a universal methodology for assessing SQ, we conducted a field-study at three sites within the largest sugarcane-producing region of Brazil to develop a SQ index (SQI). The most common LUC scenario (i.e., native vegetation to pasture to sugarcane) was evaluated using six SQI strategies with varying complexities. Thirty eight soil indicators were included in the total dataset. Two minimum datasets were selected: one using principal component analysis (7 indicators) and the other based on expert opinion (5 indicators). Non-linear scoring curves were used to interpret the indicator values. Weighted and non-weighted additive methods were used to combine individual indicator scores into an overall SQI. Long-term conversion from native vegetation to extensive pasture significantly decreased overall SQ. In contrast, conversion from pasture to sugarcane had no significant impact on overall SQ at the regional scale, but site-specific responses were found. In general, sugarcane production improved chemical attributes (i.e., higher macronutrient levels and lower soil acidity); however it has negative effects on physical and biological attributes (i.e., higher soil compaction and structural degradation as well as lower soil organic carbon (SOC), abundance and diversity of macrofauna and microbial activity). Overall, we found that simple, user-friendly strategies were as effective as more complex ones for identifying SQ changes. Therefore, as a protocol for SQ assessments in Brazilian sugarcane areas, we recommend using a small number of indicators (e.g., pH, P, K, Visual Evaluation of Soil Structure -VESS scores and SOC concentration) and proportional weighting to reflect chemical, physical and biological processes within the soil. Our SQ evaluations also suggest that current approaches for expanding Brazilian sugarcane production by converting degraded pasture land to cropland can be a sustainable strategy for meeting increasing biofuel demand. However, management practices that alleviate negative impacts on soil physical and biological indicators must be prioritized within sugarcane producing areas to prevent unintentional SQ degradation over time.

The influence of cockchafer larvae on net soil methane fluxes under different vegetation types - a mesocosm study

NASA Astrophysics Data System (ADS)

Görres, Carolyn-Monika; Kammann, Claudia; Chesmore, David; Müller, Christoph

2017-04-01

The influence of land-use associated pest insects on net soil CH4 fluxes has received little attention thus far, although e.g. soil-dwelling Scarabaeidae larvae are qualitatively known to emit CH4. The project "CH4ScarabDetect" aims to provide the first quantitative estimate of the importance of soil-dwelling larvae of two important European agricultural and forest pest insect species - the common cockchafer (Melolontha melolontha) and the forest cockchafer (M. hippocastani) - for net soil CH4 fluxes. Here we present a mesocosm study within "CH4ScarabDetect" which tests the influence of different abundances of common cockchafer larvae on net soil CH4 fluxes under different vegetation types. In August 2016, 27 PVC boxes with a base area of 50 cm x 50 cm and a height of 40 cm were buried in planting beds previously used for cultivating vegetables. The bottom of each box was filled with a 10 cm thick layer of loam which was then covered with a 25 cm thick layer of loamy sand. The soil was hand-sieved prior to filling the boxes to remove any macrofauna. The mesocosms were planted with either turf, carrots or a combination of both. Of the resulting nine replicates per vegetation type, six were infested with one cockchafer larvae each in November 2016. In three of these infested mesocosms, the larvae abundance will be further increased to three in May 2017. This mesocosm study will continue until October 2017 during which measurements of net soil CH4 fluxes will be conducted with the chamber flux method twice per month. For the in situ separation of gross CH4 production and gross CH4 oxidation, the chamber method will be combined with a 13CH4 isotope pool dilution technique. Methane concentrations and their isotopic signatures in the collected gas samples will be analysed with a state-of-the-art CRDS analyzer (cavity ring-down spectroscopy, G2201-i) equipped with the Small Sample Isotope Module 2 - A0314 (Picarro Inc., USA). Different combinations of larvae abundance and depth distribution might yield the same net CH4 flux rates. To account for this non-invasively, the chamber measurements are additionally combined with acoustic measurements of larvae activity in the soil. For this purpose, an acoustice sensor is installed in the middle of each mesocom. This is the first time that a 13CH4 isotope pool dilution technique, the chamber method, and acoustic measurements are combined to study non-invasively the influence of soil-dwelling larve on net soil CH4 fluxes in the field. This novel approach will not only further our understanding of the role of cockchafer larvae in the terrestrial CH4 cycle and provide a new tool for soil CH4 flux and soil insect studies, but promises to also improve our knowledge on cockchafer ecology as well as the monitoring of cockchafer infestations in agricultural and forest soils. This project has received funding from the European Union's Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie grant agreement No 703107.

Modelling biogeochemical processes in sediments from the north-western Adriatic Sea: response to enhanced particulate organic carbon fluxes

NASA Astrophysics Data System (ADS)

Brigolin, Daniele; Rabouille, Christophe; Bombled, Bruno; Colla, Silvia; Vizzini, Salvatrice; Pastres, Roberto; Pranovi, Fabio

2018-03-01

This work presents the result of a study carried out in the north-western Adriatic Sea, by combining two different types of biogeochemical models with field sampling efforts. A longline mussel farm was taken as a local source of perturbation to the natural particulate organic carbon (POC) downward flux. This flux was first quantified by means of a pelagic model of POC deposition coupled to sediment trap data, and its effects on sediment bioirrigation capacity and organic matter (OM) degradation pathways were investigated constraining an early diagenesis model by using original data collected in sediment porewater. The measurements were performed at stations located inside and outside the area affected by mussel farm deposition. Model-predicted POC fluxes showed marked spatial and temporal variability, which was mostly associated with the dynamics of the farming cycle. Sediment trap data at the two sampled stations (inside and outside of the mussel farm) showed average POC background flux of 20.0-24.2 mmol C m-2 d-1. The difference of organic carbon (OC) fluxes between the two stations was in agreement with model results, ranging between 3.3 and 14.2 mmol C m-2 d-1, and was primarily associated with mussel physiological conditions. Although restricted, these changes in POC fluxes induced visible effects on sediment biogeochemistry. Observed oxygen microprofiles presented a 50 % decrease in oxygen penetration depth (from 2.3 to 1.4 mm), accompanied by an increase in the O2 influx at the station below the mussel farm (19-31 versus 10-12 mmol O2 m-2 d-1) characterised by higher POC flux. Dissolved inorganic carbon (DIC) and NH4+ concentrations showed similar behaviour, with a more evident effect of bioirrigation underneath the farm. This was confirmed through constraining the early diagenesis model, of which calibration leads to an estimation of enhanced and shallower bioirrigation underneath the farm: bioirrigation rates of 40 yr-1 and irrigation depth of 15 cm were estimated inside the shellfish deposition footprint versus 20 yr-1 and 20 cm outside. These findings were confirmed by independent data on macrofauna composition collected at the study site. Early diagenesis model results indicated a larger organic matter mineralisation below the mussel farm (11.1 versus 18.7 mmol m-2 d-1), characterised by similar proportions between oxic and anoxic degradation rates at the two stations, with an increase in the absolute values of oxygen consumed by OM degradation and reduced substances re-oxidation underneath the mussel farm.

Do reclamation speed up recovery of soil and soil biota on post mining sites along climatic gradient across continental USA?

NASA Astrophysics Data System (ADS)

Frouz, Jan

2015-04-01

Soil biota community (macrofauna, nematodes and microbial community studied by PLFA) was studied together with soil development in post-mining chronosequences along climatic gradient in the USA, covering hardwood forest (TN, IN), tallgrass prairie (IL), or shortgrass prairie (WY). Post mining sites reclaimed according recent regulation which includes topsoil application and vegetation establishment were compared to local climax. Both young and old restoration sites were much closer to the climax condition in shortgrass prairie than in the other sites. The shortgrass prairie soil community contained abundant root-feeding organisms, which may establish quicker than the saprophagous fauna that was abundant at the other sites. Absence of saprophagous groups, and especially earthworms, resulted in the absence of bioturbation in shortgrass prairie sites while in chronosequences other than the one in shortgrass prairie, bioturbation played an important role in topsoil formation resulting in more complex soil profile development compare to shortgrass prairie. This may contribute to faster recovery communities in shortgrass prairie in comparison with tallgrass prairie and forest as At the same time sites that were reclaimed according recent regulation (topsoil application and vegetation establishment) were compare to unreclaimed sites both about 30 years old in TN IL and WY. It TN soil and soil biota seems to approach fasted to climax in unreclaimed than reclaimed sites. In IL this differences between reclaimed and unreclaimed sites was not so clear. While in WY reclaimed sites seems to approach to climax community fasted than unreclaimed one. This suggests that effect of reclamation vary along climatic gradient. In drier sites, formation of soil matrix from parent material is probably much slower and topsoil application speed up soil community recovery substantially while this effect is less pronounces in more wet sites, where soil compaction due to restoration may in some cases even slow recovery.

Carbon redistribution during interrill erosion in subtropical forests: Effects of leaf litter diversity and soil fauna

NASA Astrophysics Data System (ADS)

Goebes, Philipp; Seitz, Steffen; Kühn, Peter; Scholten, Thomas

2016-04-01

Soil erosion is crucial for degradation of carbon (C) from their pools in the soil. If C of the eroded sediment and runoff are not only related to soil pools but also resulting additively from decomposition of litter cover, the system gets more complex. The role of these amounts for C cycling in a forest environment is not yet known properly and thus, the aim of this study was to investigate the role of leaf litter diversity, litter cover and soil fauna on C redistribution during interrill erosion. We established 96 runoff plots that were deployed with seven domestic leaf litter species resulting in none species (bare ground), 1-species, 2-species and 4-species mixtures. Every second runoff plot was equipped with a fauna extinction feature to investigate the role of soil meso- and macrofauna. Erosion processes were initiated using a rainfall simulator at two time steps (summer 2012 and autumn 2012) to investigate the role of leaf litter decomposition on C redistribution. C fluxes during 20 min rainfall simulation were 99.13 ± 94.98 g/m². C fluxes and C contents both were affected by soil fauna. C fluxes were higher with presence of soil fauna due to loosening and slackening of the soil surface rather than due to faster decomposition of leaves. In contrast, C contents were higher in the absence of soil fauna possibly resulting from a missing dilution effect in the top soil layer. Leaf litter diversity did not affect C fluxes, but indirectly affected C contents as it increased the soil fauna effect with higher leaf litter diversity due to superior food supply. Initial C contents in the soil mainly determined those of the eroded sediment. For future research, it will be essential to introduce a long-term decomposition experiment to get further insights into the processes of C redistribution.

Benthic Trophic Interactions in an Antarctic Shallow Water Ecosystem Affected by Recent Glacier Retreat.

PubMed

Pasotti, Francesca; Saravia, Leonardo Ariel; De Troch, Marleen; Tarantelli, Maria Soledad; Sahade, Ricardo; Vanreusel, Ann

2015-01-01

The western Antarctic Peninsula is experiencing strong environmental changes as a consequence of ongoing regional warming. Glaciers in the area are retreating rapidly and increased sediment-laden meltwater runoff threatens the benthic biodiversity at shallow depths. We identified three sites with a distinct glacier-retreat related history and different levels of glacial influence in the inner part of Potter Cove (King George Island, South Shetland Islands), a fjord-like embayment impacted since the 1950s by a tidewater glacier retreat. We compared the soft sediment meio- and macrofauna isotopic niche widths (δ13C and δ15N stable isotope analysis) at the three sites to investigate possible glacier retreat-related influences on benthic trophic interactions. The isotopic niches were locally shaped by the different degrees of glacier retreat-related disturbance within the Cove. Wider isotopic niche widths were found at the site that has become ice-free most recently, and narrower niches at the older ice-free sites. At an intermediate state of glacier retreat-related disturbance (e.g. via ice-growler scouring) species with different strategies could settle. The site at the earliest stage of post-retreat development was characterized by an assemblage with lower trophic redundancy. Generally, the isotopic niche widths increased with increasing size spectra of organisms within the community, excepting the youngest assemblage, where the pioneer colonizer meiofauna size class displayed the highest isotopic niche width. Meiofauna at all sites generally occupied positions in the isotopic space that suggested a detrital-pool food source and/or the presence of predatory taxa. In general ice scour and glacial impact appeared to play a two-fold role within the Cove: i) either stimulating trophic diversity by allowing continuous re-colonization of meiofaunal species or, ii) over time driving the benthic assemblages into a more compact trophic structure with increased connectedness and resource recycling.

Benthic Trophic Interactions in an Antarctic Shallow Water Ecosystem Affected by Recent Glacier Retreat

PubMed Central

Pasotti, Francesca; Saravia, Leonardo Ariel; De Troch, Marleen; Tarantelli, Maria Soledad; Sahade, Ricardo; Vanreusel, Ann

2015-01-01

The western Antarctic Peninsula is experiencing strong environmental changes as a consequence of ongoing regional warming. Glaciers in the area are retreating rapidly and increased sediment-laden meltwater runoff threatens the benthic biodiversity at shallow depths. We identified three sites with a distinct glacier-retreat related history and different levels of glacial influence in the inner part of Potter Cove (King George Island, South Shetland Islands), a fjord-like embayment impacted since the 1950s by a tidewater glacier retreat. We compared the soft sediment meio- and macrofauna isotopic niche widths (δ13C and δ15N stable isotope analysis) at the three sites to investigate possible glacier retreat-related influences on benthic trophic interactions. The isotopic niches were locally shaped by the different degrees of glacier retreat-related disturbance within the Cove. Wider isotopic niche widths were found at the site that has become ice-free most recently, and narrower niches at the older ice-free sites. At an intermediate state of glacier retreat-related disturbance (e.g. via ice-growler scouring) species with different strategies could settle. The site at the earliest stage of post-retreat development was characterized by an assemblage with lower trophic redundancy. Generally, the isotopic niche widths increased with increasing size spectra of organisms within the community, excepting the youngest assemblage, where the pioneer colonizer meiofauna size class displayed the highest isotopic niche width. Meiofauna at all sites generally occupied positions in the isotopic space that suggested a detrital-pool food source and/or the presence of predatory taxa. In general ice scour and glacial impact appeared to play a two-fold role within the Cove: i) either stimulating trophic diversity by allowing continuous re-colonization of meiofaunal species or, ii) over time driving the benthic assemblages into a more compact trophic structure with increased connectedness and resource recycling. PMID:26559062

Benthic macrofaunal colonization patterns and preservation of laminated sediments: Observations in an extreme coastal basin environment in the lower Gulf of California

NASA Astrophysics Data System (ADS)

Herguera, J.; Paull, C. K.; Anderson, K.; Gwiazda, R.; Lundsten, E. M.; Kundz, L.; Edwards, B. D.; McGann, M. L.

2012-12-01

New observations and cores obtained with the ROV Doc Ricketts operated from the RV/Western Flyer provide a glimpse into a macrofauna barren sea-floor where laminated sediments are known to accumulate on the sea-floor of Alfonso Basin. This basin, located north of La Paz Bay, Baja California, is known to be an important repository of laminated sediments due to a combination of the relatively high input of terrigenous sediments brought in by summer rains, a moderate to high export productivity from its surface waters, and the very low oxygen concentrations at depth bathed by tropical subsurface waters. These laminated sediments are unique repositories of paleoceanographic and paleoclimatic information for its very high resolution records of past conditions comparable to ice core, tree ring, coral and cave records although spanning continuously much further back in time. However, the paleoceanographic community rarely has had the opportunity to visualize the seafloor surface where these sediments are accumulating and examine the biological abundance patterns in these extreme environments. Here we will show results from ROV Doc Ricketts quantitative video transects providing benthic faunal abundance patterns on the seafloor in these highly oxygen depleted bottom waters. These observations are further compared with the underlying stratigraphy. A coring system carried on the ROV allowed us to replicate cores and to collect a transect of 5 closely spaced cores to evaluate the horizontal extent of the observed variability down-core. We will also show some preliminary results from x-radiographs showing the nature of the laminations and its sediment composition based on elemental analysis on organic carbon, carbonate and biogenic opal analysis. New XRF results from a box core will be used to calibrate its terrigenous components with the historical rainfall record and evaluate its potential to reconstruct summer precipitation patterns in this region.

Macrofauna community inside and outside of the Darwin Mounds SAC, NE Atlantic

NASA Astrophysics Data System (ADS)

Serpetti, N.; Gontikaki, E.; Narayanaswamy, B. E.; Witte, U.

2012-11-01

Over the past two decades, growing concerns have been raised regarding the effects of towed fishing gears, such as trawls and dredges, on deep-sea biodiversity and ecosystem functioning. Trawling disturbs the benthic communities both physically and biologically, and can eliminate the most vulnerable organisms and modify habitat structure; chronically disturbed communities are often dominated by opportunistic species. The European Union is under obligation to designate a network of offshore Special Areas of Conservation (SACs) and Marine Protected Areas (MPAs) by the end of 2012 based on the perceived expectation that these networks will help protect marine biodiversity and that within these areas, faunal abundance and diversity will be higher than the surrounding fished areas. The Darwin Mounds, only discovered in 1998, are located in the Rockall Trough, NE Atlantic at a depth of ~ 1000 m. Deep-water trawling regularly took place in the region of the Darwin Mounds; however in 2004 the mounds were designated as the first offshore SAC in UK and the area is now closed to bottom trawling. As part of the HERMIONE programme the influence of human impact on the Oceans was one of the key themes and in June 2011, an investigation of the macrofaunal community structure at comparable sites both inside and outside of the Darwin Mound SAC was undertaken. Macrofaunal communities were found to differ significantly, with the difference mostly driven by changes in the abundance of polychaetes, crustaceans and nematodes whilst no significant differences were seen for the other phyla. Whereas overall macrofaunal abundance was higher outside the SAC compared to within, this pattern varies considerably between phyla. Diversity indices showed no significant differences between protected and unprotected sites. This could indicate that a few years of preservation are not enough time to determine a recovery by the macrofaunal community of cold-water ecosystems and that a continued monitoring over a longer term is necessary to fully understand the impact of fishery closures.

The distribution and diversity of benthic macroinvertebrate fauna in Pondicherry mangroves, India

PubMed Central

2013-01-01

Background Species distribution, abundance and diversity of mangrove benthic macroinvertebrate fauna and the relationships to environmental conditions are important parts of understanding the structure and function of mangrove ecosystems. In this study seasonal variation in the distribution of macrobenthos and related environmental parameters were explored at four mangrove stations along the Pondicherry coast of India, from September 2008 to July 2010. Multivariate statistical analyses, including cluster analysis, principal component analysis and non-multidimensional scales plot were employed to help define trophic status, water quality and benthic characteristic at the four monitoring stations. Results Among the 528 samples collected over 168 ha of mangrove forest 76 species of benthic macroinvertebrate fauna were identified. Macrofauna were mainly composed of deposit feeders, dominated numerically by molluscs and crustaceans. Statistical analyses yielded the following descriptors of benthic macroinvertebrate fauna species distribution: densities between 140–1113 ind. m-2, dominance 0.17-0.50, diversity 1.80-2.83 bits ind-1, richness 0.47-0.74 and evenness 0.45-0.72, equitability 0.38-0.77, berger parker 0.31-0.77 and fisher alpha 2.46-5.70. Increases of species diversity and abundance were recorded during the post monsoon season at station 1 and the lowest diversity was recorded at station 2 during the monsoon season. The pollution indicator organisms Cassidula nucleus, Melampus ceylonicus, Sphaerassiminea minuta were found only at the two most polluted regions, i.e. stations 3 and 4. Benthic macroinvertebrate fauna abundances were inversely related to salinity at the four stations, Based on Bray-Curtis similarity through hierarchical clustering implemented in PAST, it was possible to define three distinct benthic assemblages at the stations. Conclusions From a different multivariate statistical analysis of the different environmental parameters regarding species diversity and abundance of benthic macroinvertebrate fauna, it was found that benthic communities are highly affected by all the environmental parameters governing the distribution and diversity variation of the macrofaunal community in Pondicherry mangroves. Salinity, dissolved oxygen levels, organic matter content, sulphide concentration were the most significant parameters. PMID:23937801

Insights into the benthic communities response to the inflow of Black Sea mesotrophic waters in the North Aegean Sea

NASA Astrophysics Data System (ADS)

Lampadariou, Nikolaos; Sevastou, Katerina; Podaras, Dimitrios; Tselepides, Anastasios

2017-10-01

The effects of the Dardanelles inflow of buoyant, modified Black Sea waters (BSW) of low salinity and temperature, on the meio- and macrobenthic communities of the north Aegean ecosystem was investigated during two cruises in October 2013 and March 2014. Sediment samples were collected from two stations subjected to the BSW effect, one shallow and one deep north of the Dardanelles Straits, and from two stations of similar bathymetry, which were considered to be outside the influence of BSW and were located to the south of the Dardanelles Straits. Results suggest that there is an effect of the BSW on benthos, as both meiofaunal and macrofaunal standing stocks were lower at the most distant, and therefore least affected from the inflow, station, and higher at the station of similar bathymetry which was affected the most by the BSW inflow. Univariate and multivariate non-parametric analyses (nMDS, PERMANOVA) provided further support, indicating differences between the two areas (North vs. South) in the case of the deep stations, while differences between depth categories were evident in the area outside the BSW influence zone. Distance-based linear modeling (DISTLM) indicated that meiofauna correlated with proxies of food availability and sediment characteristics. Macrofauna, on the other hand, showed a rather high significant correlation with depth only. Nematode species composition was statistically significant different between depth categories only, yet the nMDS ordination clearly separated the deep southern station from the rest, with non-selective deposit feeders dominating the stations under the influence of the BSW, and epistratum feeders being important at the stations outside the influence of the BSW. It is concluded that both the meiofaunal and macrofaunal communities at the northern stations benefit from a constant input of high amounts of organic matter to the seafloor, while those at the southern area may be occasionally affected by the thermohaline BSW front, which may reach as far as the southern stations, resulting in higher but rather unpredictable organic enrichment.

Towards an impact assessment of bauxite red mud waste on the knowledge of the structure and functions of bathyal ecosystems: The example of the Cassidaigne canyon (north-western Mediterranean Sea).

PubMed

Dauvin, Jean-Claude

2010-02-01

Since 1967, the alumina plants in the Marseilles area (Barasse and Gardanne) have been discharging the mineral residue (i.e., red mud) resulting from the alkaline processing of bauxite into the submarine Cassidaigne canyon (north-western Mediterranean Sea) through pipes situated at 320-330 m in depth. The Barasse pipe stopped being used in 1988. From 1987 to 1996, many decrees and regulations were promulgated by the French State to rule the conditions under which the Gardanne alumina refinery was authorized to dispose of the bauxite residue in the sea. The refinery was required: (i) to study the hydrodynamic circulation in the Cassidaigne canyon to evaluate the potential dispersion and transport of fine elements discharged into the water mass and their impact on the pelagic ecosystem; (ii) to survey the marine environment every five years to control the expansion and thickness of the red mud deposit and compare the evolution of the benthic macrofauna at representative sampling sites in the environment affected by the red mud discharge with that of reference sites outside of the red mud plume; (iii) to study the effect of the discharge on fishing activities; and (iv) to investigate the toxicity of the red mud, particularly its persistence, accumulation, interaction and effect on the marine ecosystem, paying special attention to the bio-accumulation of chromium and vanadium. A Scientific Committee was created to insure an independent evaluation of the studies promised by the manufacturer in response to the State's regulations. Since the beginning of the 1960s, data have been accumulating on the structure and long-term functioning of the Cassidaigne bathyal ecosystem. This paper presents the collaborative efforts of the State-Manufacturer-Committee triplet and summarizes the main results obtained during the last period's sea campaigns (1991-2007). This paper also illustrates how national regulations concerning manufacturers, such as Gardanne alumina refinery, have provided new knowledge about the structure and functioning of a bathyal ecosystem in the Cassidaigne canyon in the north-western Mediterranean Sea. Copyright 2009 Elsevier Ltd. All rights reserved.

Influence of sediment-organic matter quality on growth and polychlorobiphenyl bioavailability in Echinodermata (Amphiura filiformis)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gunnarsson, J.S.; Granberg, M.E.; Nilsson, H.C.

Sediment total organic carbon (TOC) content is considered to be a primary food source for benthic invertebrates and a major factor influencing the partitioning and bioavailability of sediment-associated organic contaminants. Most studies report that both toxicity and uptake of sediment-associated contaminants by benthic organisms are inversely proportional to sediment TOC content. The aim of this study was to determine the importance of the TOC quality for the bioavailability of sediment-associated organic contaminants and the growth of benthic macrofauna. The common infaunal brittle star Amphiura filiformis was exposed to a base sediment covered by a {sup 14}C-polychlorobipenyl (3,3{prime}4,4{prime}-{sup 14}C-tetrachlorobiphenyl (TCB)) contaminatedmore » top layer (0--2 cm), enriched to the same TOC content with 31 g TOC/m{sup 2} of different quality and origin. The following carbon sources, ranging from labile to refractory, were used: (1) green macroalga (Ulva lactuca), (2) brown macroalga (Ascophyllum nodosum), (3) eelgrass (Zostera Marina), (4) phytoplankton (Ceratium spp.), and (5) lignins of terrestrial origin. Characterization of the organic matter quality was accomplished by measuring the content of amino acids, lipids, C, N, and polyphenolic compounds. The reactivity of the sedimentary organic matter was assessed by means of respiration and dissolved inorganic nitrogen flux measurements. The experiment was carried out in 1-L glass jars, each containing four brittle stars and the contaminated and enriched sediment. The jars were circulated in a flow-through mode with filtered seawater. Somatic growth (regeneration of a precut arm) and bioaccumulation of {sup 14}C-TCB were measured at 10 sampling occasions during 48 d of exposure. Growth rates, TCB uptake rates, and steady-state concentrations differed significantly between treatments and were correlated to the qualities of the organic substrates. The greatest TCB accumulation and growth were observed in treatments with the most labile organic substrates and the lowest accumulation and growth were seen with the most refractory substrates. Results from this experiment suggest that the bioaccumulation of organic contaminants in benthic infauna is dependent on the nutritional quality of the sedimentary organic matter.« less

Alterations in macroinvertebrate spatial patterns in coastal lagoons: Óbidos (NW coast of Portugal) 1984 versus 2002

NASA Astrophysics Data System (ADS)

Rodrigues, Ana Maria; Quintino, Victor; Pereira, Fábio; Freitas, Rosa

2012-09-01

The macroinvertebrate spatial distribution patterns in the Lagoon of Óbidos were studied in 1984 and revisited in 2002. The overall surficial sediments and benthic community patterns show consistent similarities in the two sampling periods, but also important differences. The lagoon is relatively shallow, with about 1/3 of the area covered with extensive intertidal sand banks. These are interrupted by a navigation channel bordering the northern margin (1984) and, following dredging operations, a new navigation channel was opened along the southern margin (2002). The sediments in the navigation channels were coarser and with less percentage of fines in 2002 than in 1984. Arthropods dominated the species richness and abundance in 1984, but were much less important in 2002, when the community was dominated by molluscs and annelids, both in species numbers as well as in abundance. In 1984, the structure of the macrofauna communities closely followed a general model proposed for Atlantic and Mediterranean lagoons, with the marine, the transition and the lagoon communities occupying very well defined areas. This gradient was in accordance with an increase in the fines and organic matter content directed inwards allowing for the coexistence of several characteristic lagoon species with others characteristic of organic enriched sediments. In 2002 this spatial pattern is still recognized but the marine and the transition communities are spatially mixed, occupying both the entrance region and the navigation channels, whereas the characteristic lagoon community identified in 1984 was only recognized in a group of sites located along the southern margin in 2002. Several species show very important changes in their distribution extent in the lagoon system. These changes essentially show a generalized inward expansion of the distribution range of the marine species, in agreement with a larger influence of marine conditions toward the inner areas of the lagoon. This study shows how sensitive lagoon systems can be to the regime of water exchange rate with the ocean being possible to induce more or less marine conditions to the system as a response to the flow and exchange rate of water through the communication inlet following dredging interventions.

Effect of elevated CO2, O3, and UV radiation on soils.

PubMed

Formánek, Pavel; Rejšek, Klement; Vranová, Valerie

2014-01-01

In this work, we have attempted to review the current knowledge on the impact of elevated CO2, O3, and UV on soils. Elevated CO2 increases labile and stabile soil C pool as well as efficiency of organic pollutants rhizoremediation and phytoextraction of heavy metals. Conversely, both elevated O3 and UV radiation decrease inputs of assimilates to the rhizosphere being accompanied by inhibitory effects on decomposition processes, rhizoremediation, and heavy metals phytoextraction efficiency. Contrary to elevated CO2, O3, or UV-B decreases soil microbial biomass, metabolisable C, and soil N t content leading to higher C/N of soil organic matter. Elevated UV-B radiation shifts soil microbial community and decreases populations of soil meso- and macrofauna via direct effect rather than by induced changes of litter quality and root exudation as in case of elevated CO2 or O3. CO2 enrichment or increased UV-B is hypothesised to stimulate or inhibit both plant and microbial competitiveness for soluble soil N, respectively, whereas O3 favours only microbial competitive efficiency. Understanding the consequences of elevated CO2, O3, and UV radiation for soils, especially those related to fertility, phytotoxins inputs, elements cycling, plant-microbe interactions, and decontamination of polluted sites, presents a knowledge gap for future research.

Lotic community responses in the Lees Ferry reach

NASA Astrophysics Data System (ADS)

McKinney, T.; Rogers, R. S.; Ayers, A. D.; Persons, W. R.

Responses of periphyton, aquatic macrophytes, benthic macroinvertebrates, and rainbow trout to the 1996 controlled flood were investigated in the Lees Ferry tailwater reach below Glen Canyon Dam on the Colorado River. Lotic biota differed spatially and temporally in abundance and distribution following recession of flood waters, and there was no evidence that the flood benefitted trout or lower trophic levels. The flood was associated with short-term changes in lower trophic levels, but benthic vegetation and macrofauna with low resistance were resilient. Adverse impacts of the flood on lower trophic levels were greater and more prolonged in depositional areas than on cobble bar habitat, but recovery occurred in both habitat types 4-8 months after the flood. The flood likely resulted in some downstream displacement of smaller fish but had no effects on catch rate or condition indices of trout. Percentage of young-of-the-year trout 8 months after the event indicates that the flood did not prevent successful spawning. The flood had little direct influence on diets of trout, but relative gut volume increased in the week after the event, remained high in summer, and composition changed seasonally. Amphipods (Gammarus lacustris), chironomids, and snails were predominant food items, and Gammarus generally were eaten more often and comprised greater relative volume in the diet than other macroinvertebrate taxa.

Monitoring coastal pollution associated with the largest oil refinery complex of Venezuela

PubMed Central

Bone, David; Bastidas, Carolina; Ramos, Ruth

2016-01-01

This study evaluated pollution levels in water and sediments of Península de Paraguaná and related these levels with benthic macrofauna along a coastal area where the largest Venezuelan oil refineries have operated over the past 60 years. For this, the concentration of heavy metals, of hydrocarbon compounds and the community structure of the macrobenthos were examined at 20 sites distributed along 40 km of coastline for six consecutive years, which included windy and calm seasons. The spatial variability of organic and inorganic compounds showed considerably high coastal pollution along the study area, across both years and seasons. The southern sites, closest to the refineries, had consistently higher concentrations of heavy metals and organic compounds in water and sediments when compared to those in the north. The benthic community was dominated by polychaetes at all sites, seasons and years, and their abundance and distribution were significantly correlated with physical and chemical characteristics of the sediments. Sites close to the oil refineries were consistently dominated by families known to tolerate xenobiotics, such as Capitellidae and Spionidae. The results from this study highlight the importance of continuing long-term environmental monitoring programs to assess the impact of effluent discharge and spill events from the oil refineries that operate in the western coast of Paraguaná, Venezuela. PMID:27375970

Monitoring coastal pollution associated with the largest oil refinery complex of Venezuela.

PubMed

Croquer, Aldo; Bone, David; Bastidas, Carolina; Ramos, Ruth; García, Elia

2016-01-01

This study evaluated pollution levels in water and sediments of Península de Paraguaná and related these levels with benthic macrofauna along a coastal area where the largest Venezuelan oil refineries have operated over the past 60 years. For this, the concentration of heavy metals, of hydrocarbon compounds and the community structure of the macrobenthos were examined at 20 sites distributed along 40 km of coastline for six consecutive years, which included windy and calm seasons. The spatial variability of organic and inorganic compounds showed considerably high coastal pollution along the study area, across both years and seasons. The southern sites, closest to the refineries, had consistently higher concentrations of heavy metals and organic compounds in water and sediments when compared to those in the north. The benthic community was dominated by polychaetes at all sites, seasons and years, and their abundance and distribution were significantly correlated with physical and chemical characteristics of the sediments. Sites close to the oil refineries were consistently dominated by families known to tolerate xenobiotics, such as Capitellidae and Spionidae. The results from this study highlight the importance of continuing long-term environmental monitoring programs to assess the impact of effluent discharge and spill events from the oil refineries that operate in the western coast of Paraguaná, Venezuela.

The influence of long-term copper contaminated agricultural soil at different pH levels on microbial communities and springtail transcriptional regulation.

PubMed

de Boer, Tjalf E; Taş, Neslihan; Braster, Martin; Temminghoff, Erwin J M; Röling, Wilfred F M; Roelofs, Dick

2012-01-03

Copper has long been applied for agricultural practises. Like other metals, copper is highly persistent in the environment and biologically active long after its use has ceased. Here we present a unique study on the long-term effects (27 years) of copper and pH on soil microbial communities and on the springtail Folsomia candida an important representative of the soil macrofauna, in an experiment with a full factorial, random block design. Bacterial communities were mostly affected by pH. These effects were prominent in Acidobacteria, while Actinobacteria and Gammaroteobacteria communities were affected by original and bioavailable copper. Reproduction and survival of the collembolan F. candida was not affected by the studied copper concentrations. However, the transcriptomic responses to copper reflected a mechanism of copper transport and detoxification, while pH exerted effects on nucleotide and protein metabolism and (acute) inflammatory response. We conclude that microbial community structure reflected the history of copper contamination, while gene expression analysis of F. candida is associated with the current level of bioavailable copper. The study is a first step in the development of a molecular strategy aiming at a more comprehensive assessment of various aspects of soil quality and ecotoxicology.

Impact of Lanice conchilega on seafloor microtopography off the island of Sylt (German Bight, SE North Sea)

NASA Astrophysics Data System (ADS)

Schönke, M.; Feldens, P.; Wilken, D.; Papenmeier, S.; Heinrich, C.; von Deimling, J. Schneider; Held, P.; Krastel, S.

2017-06-01

This study presents a new in situ method to explore the impact of macrofauna on seafloor microtopography and corresponding microroughness based on underwater laser line scanning. The local microtopography was determined with mm-level accuracy at three stations colonised by the tubeworm Lanice conchilega offshore of the island of Sylt in the German Bight (south-eastern North Sea), covering approximately 0.5 m2 each. Ground truthing was done using underwater video data. Two stations were populated by tubeworm colonies of different population densities, and one station had a hydrodynamically rippled seafloor. Tubeworms caused an increased skewness of the microtopography height distribution and an increased root mean square roughness at short spatial wavelengths compared with hydrodynamic bedforms. Spectral analysis of the 2D Fourier transformed microtopography showed that the roughness magnitude increased at spatial wavelengths between 0.020 and 0.003 m independently of the tubeworm density. This effect was not detected by commonly used 1D roughness profiles but required consideration of the complete spectrum. Overall, the results reveal that new indicator variables for benthic organisms may be developed based on microtopographic data. An example demonstrates the use of local slope and skewness to detect tubeworms in the measured digital elevation model.

Chapter 12. Canyons microbiology studies

USGS Publications Warehouse

Kellogg, Christina A.; Lawler, Stephanie N.

2017-01-01

Off the eastern coast of the United States, several deep canyons cut through the continental shelf, acting like funnels to move sediment from the shelf out to the deep seafloor. Exposed rock outcrops and ledges along the walls of these canyons provide important habitat for deepsea corals and sponges. Although a few scientific expeditions have visited these canyons in the 1970s (Hecker and Blechschmidt 1979, Hecker et al. 1980), their purpose was mainly to map the contours and capture photographs of the bottom using manned submersibles and towed cameras. Our knowledge of the biodiversity in these complex ecosystems is limited; we know little about the macrofauna (e.g., fishes, crabs, sponges, and deepsea corals) and even less about the microbiota.The research described in this report was conducted from 2011 to 2015 as part of the Bureau of Ocean Energy Management (BOEM) study, entitled “Atlantic Deepwater Canyons” study. This work used molecular and microbiological techniques to examine the microbial ecology and diversity associated with Baltimore and Norfolk canyons. Specifically, this work focused on the microbial ecology of four species of octocorals (Acanthogorgia aspera, Anthothela grandiflora, Paramuricea placomus, and Primnoa resedaeformis), the microbial diversity in sediments within and outside the canyons, and a settling plate experiment designed to characterize microbial biofilm formation on a variety of hard substrates.

Impact of Organic and Conventional Systems of Coffee Farming on Soil Properties and Culturable Microbial Diversity

PubMed Central

2016-01-01

A study was undertaken with an objective of evaluating the long-term impacts of organic (ORG) and conventional (CON) methods of coffee farming on soil physical, chemical, biological, and microbial diversity. Electrical conductivity and bulk density were found to increase by 34% and 21%, respectively, in CON compared to ORG system, while water holding capacity was found decreased in both the systems. Significant increase in organic carbon was observed in ORG system. Major nutrients, nitrogen and potassium, levels showed inclination in both ORG and CON system, but the trend was much more pronounced in CON system. Phosphorus was found to increase in both ORG and CON system, but its availability was found to be more with CON system. In biological attributes, higher soil respiration and fluorescein diacetate activity were recorded in ORG system compared to CON system. Higher soil urease activity was observed in CON system, while dehydrogenase activity does not show significant differences between ORG and CON systems. ORG system was found to have higher macrofauna (31.4%), microbial population (34%), and microbial diversity indices compared to CON system. From the present study, it is accomplished that coffee soil under long-term ORG system has better soil properties compared to CON system. PMID:27042378

Impact of Organic and Conventional Systems of Coffee Farming on Soil Properties and Culturable Microbial Diversity.

PubMed

Velmourougane, Kulandaivelu

2016-01-01

A study was undertaken with an objective of evaluating the long-term impacts of organic (ORG) and conventional (CON) methods of coffee farming on soil physical, chemical, biological, and microbial diversity. Electrical conductivity and bulk density were found to increase by 34% and 21%, respectively, in CON compared to ORG system, while water holding capacity was found decreased in both the systems. Significant increase in organic carbon was observed in ORG system. Major nutrients, nitrogen and potassium, levels showed inclination in both ORG and CON system, but the trend was much more pronounced in CON system. Phosphorus was found to increase in both ORG and CON system, but its availability was found to be more with CON system. In biological attributes, higher soil respiration and fluorescein diacetate activity were recorded in ORG system compared to CON system. Higher soil urease activity was observed in CON system, while dehydrogenase activity does not show significant differences between ORG and CON systems. ORG system was found to have higher macrofauna (31.4%), microbial population (34%), and microbial diversity indices compared to CON system. From the present study, it is accomplished that coffee soil under long-term ORG system has better soil properties compared to CON system.

Applying Benthic Index of Biotic Integrity in a soft bottom ecosystem in North of the Persian Gulf.

PubMed

Doustshenas, B; Savari, A; Nabavi, S M B; Kochanian, P; Sadrinasab, M

2009-06-15

In this study, the Chesapeake Bay Benthic Index of Biotic Integrity (B-IBI) was selected in an attempt to describe ecological health of soft bottom channels (Khowr-e Musa) in North of the Persian Gulf. Most of study area was found to be in degraded or severely degraded conditions. B-IBI scores were ranged between 1 and 3.86. Comparison ofmacrobenthos abundance and organic content between two developmental periods showed significant difference (p < 0.05). After the establishment and development of petrochemical industries, the abundance of macrofauna decreased (809 to 239 individuals m(-2)) and organic content increased leading to organic enrichment (15.3 to 22.4%). Three new sources of organic matter were found to be important namely industrial waste, sewage and mangrove litter. After 1999 about 6 millions Avicennia marina tree were planted near petrochemical zone in the area. Study area changed rapidly in the last decade and region is under severely anthropogenic impacts. The present study showed that Khowr-e Musa is under both natural stress and anthropogenic impacts and two main impacts could be attributed to the organic enrichment and to the dredging. Choice of suitable management plans and metric controls could help to the salvage of the largest tidal channel complex in Persian Gulf.

Interaction between birds and macrofauna within food webs of six intertidal habitats of the Wadden Sea.

PubMed

Horn, Sabine; de la Vega, Camille; Asmus, Ragnhild; Schwemmer, Philipp; Enners, Leonie; Garthe, Stefan; Binder, Kirsten; Asmus, Harald

2017-01-01

The determination of food web structures using Ecological Network Analysis (ENA) is a helpful tool to get insight into complex ecosystem processes. The intertidal area of the Wadden Sea is structured into diverse habitat types which differ in their ecological functioning. In the present study, six different intertidal habitats (i.e. cockle field, razor clam field, mud flat, mussel bank, sand flat and seagrass meadow) were analyzed using ENA to determine similarities and characteristic differences in the food web structure of the systems. All six systems were well balanced between their degree of organization and their robustness. However, they differed in their detailed features. The cockle field and the mussel bank exhibited a strong dependency on external imports. The razor clam field appeared to be a rather small system with low energy transfer. In the mud flat microphytobenthos was used as a main food source and the system appeared to be sensitive to perturbations. Bird predation was the most pronounced in the sand flat and the seagrass meadow and led to an increase in energy transfer and parallel trophic cycles in these habitats. Habitat diversity appears to be an important trait for the Wadden Sea as each subsystem seems to have a specific role in the overall functioning of the entire ecosystem.

Effects of shoreline discharge of iron mine tailings on a marine soft-bottom community in northern Chile.

PubMed

Lancellotti, D A; Stotz, W B

2004-02-01

This study evaluates the magnitude and extension of the impact produced by the discharge of inert allochthonous materials, including clays and particulate iron, on macrobenthic soft-bottom assemblages in the subtidal zone of a coastal bay in north-central Chile. An average of 118 Ton h(-1) of finely divided solids were discharged into the rocky intertidal zone of the bay for a period of over 16 years, producing continuous turbidity in the water column and sedimentation in the subtidal zone. Data obtained four months before cessation of the discharge showed that the macrofauna present at 20 and 50 m depth in the bay suffered an important decrease in abundance and species richness, low diversity/high dominance, and deep changes in community structure related to the discharge. The faunal assemblages present at 110 m depth did not show effects from the discharge, suggesting that the impact was limited to the inner part of the bay. The impoverished faunal aggregates at 20 and 50 m depth showed exclusive domination by the Lumbrineris bifilaris (polychaete)-Diastylis tongoyensis (cumacean) association, representing a simple trophic guild of deposit feeders. The complete absence of opportunistic species such as capitellid, spionid, and/or cirratulid polychaetes may be associated with the turbidity and sedimentation levels in the bay.

Effect of Elevated CO2, O3, and UV Radiation on Soils

PubMed Central

Rejšek, Klement; Vranová, Valerie

2014-01-01

In this work, we have attempted to review the current knowledge on the impact of elevated CO2, O3, and UV on soils. Elevated CO2 increases labile and stabile soil C pool as well as efficiency of organic pollutants rhizoremediation and phytoextraction of heavy metals. Conversely, both elevated O3 and UV radiation decrease inputs of assimilates to the rhizosphere being accompanied by inhibitory effects on decomposition processes, rhizoremediation, and heavy metals phytoextraction efficiency. Contrary to elevated CO2, O3, or UV-B decreases soil microbial biomass, metabolisable C, and soil Nt content leading to higher C/N of soil organic matter. Elevated UV-B radiation shifts soil microbial community and decreases populations of soil meso- and macrofauna via direct effect rather than by induced changes of litter quality and root exudation as in case of elevated CO2 or O3. CO2 enrichment or increased UV-B is hypothesised to stimulate or inhibit both plant and microbial competitiveness for soluble soil N, respectively, whereas O3 favours only microbial competitive efficiency. Understanding the consequences of elevated CO2, O3, and UV radiation for soils, especially those related to fertility, phytotoxins inputs, elements cycling, plant-microbe interactions, and decontamination of polluted sites, presents a knowledge gap for future research. PMID:24688424

Differential contribution of soil biota groups to plant litter decomposition as mediated by soil use

PubMed Central

Falco, Liliana B.; Sandler, Rosana V.; Coviella, Carlos E.

2015-01-01

Plant decomposition is dependant on the activity of the soil biota and its interactions with climate, soil properties, and plant residue inputs. This work assessed the roles of different groups of the soil biota on litter decomposition, and the way they are modulated by soil use. Litterbags of different mesh sizes for the selective exclusion of soil fauna by size (macro, meso, and microfauna) were filled with standardized dried leaves and placed on the same soil under different use intensities: naturalized grasslands, recent agriculture, and intensive agriculture fields. During five months, litterbags of each mesh size were collected once a month per system with five replicates. The remaining mass was measured and decomposition rates calculated. Differences were found for the different biota groups, and they were dependant on soil use. Within systems, the results show that in the naturalized grasslands, the macrofauna had the highest contribution to decomposition. In the recent agricultural system it was the combined activity of the macro- and mesofauna, and in the intensive agricultural use it was the mesofauna activity. These results underscore the relative importance and activity of the different groups of the edaphic biota and the effects of different soil uses on soil biota activity. PMID:25780777

Recolonization of macrofauna in unpolluted sands placed in a polluted yachting harbour: A field approach using experimental trays

NASA Astrophysics Data System (ADS)

Guerra-García, J. M.; García-Gómez, J. C.

2009-01-01

A field experiment using trays was conducted at Ceuta's yachting harbour, North Africa, to study the effect in recolonization of placing trays with unpolluted defaunate sediments (fine and gross sands with low contents of organic matter) inside an enclosed yachting harbour characterized by high percentages of silt and clay and high concentrations of organic matter. Sediment recolonization in the trays was mainly undertaken by the species living naturally at the yachting harbour, which recolonized both uncontaminated gross and fine sand trays (such as the crustaceans Corophium runcicorne, Corophium sextonae and Nebalia bipes, the mollusc Parvicardium exiguum and the polychaete Pseudomalacoceros tridentata). However, other species like the polychaetes Cirriformia tentaculata and Platynereis dumerilii, although also abundant in the yachting harbour, were unable to colonize the trays through transport of larvae and/or adults in the water column. The recolonization was very quick, and after the first month, the values of abundance, species richness, diversity and evenness were similar in the experimental trays and in the reference area (yachting harbour). Although the multivariate analysis showed that the species composition differed between the trays and the reference area, there were no significant differences in recolonization of gross and fine sands, indicating that other factors different from the granulometry are modulating the recolonization patterns.

The biomechanics of burrowing and boring.

PubMed

Dorgan, Kelly M

2015-01-15

Burrowers and borers are ecosystem engineers that alter their physical environments through bioturbation, bioirrigation and bioerosion. The mechanisms of moving through solid substrata by burrowing or boring depend on the mechanical properties of the medium and the size and morphology of the organism. For burrowing animals, mud differs mechanically from sand; in mud, sediment grains are suspended in an organic matrix that fails by fracture. Macrofauna extend burrows through this elastic mud by fracture. Sand is granular and non-cohesive, enabling grains to more easily move relative to each other, and macrofaunal burrowers use fluidization or plastic rearrangement of grains. In both sand and mud, peristaltic movements apply normal forces and reduce shear. Excavation and localized grain compaction are mechanisms that plastically deform sediments and are effective in both mud and sand, with bulk excavation being used by larger organisms and localized compaction by smaller organisms. Mechanical boring of hard substrata is an extreme form of excavation in which no compaction of burrow walls occurs and grains are abraded with rigid, hard structures. Chemical boring involves secretion to dissolve or soften generally carbonate substrata. Despite substantial differences in the mechanics of the media, similar burrowing behaviors are effective in mud and sand. © 2015. Published by The Company of Biologists Ltd.

Isotopic evidence for methane-based chemosynthesis in the Upper Floridan aquifer food web.

PubMed

Opsahl, Stephen P; Chanton, Jeffrey P

2006-11-01

Anecdotal observations of the Dougherty plain cave crayfish (Cambarus cryptodytes), the Georgia blind cave salamander (Haideotriton wallacei), and albinistic isopods (Caecidotea sp.) at great depths below the land surface and distant from river corridors suggest that obligate aquifer-dwelling (troglobitic) organisms are widely distributed throughout the limestone Upper Floridan aquifer (UFA). One mechanism by which subterranean life can proliferate in an environment void of plant productivity is through a microbial food web that includes chemosynthesis. We examined this possibility in the UFA by measuring the isotopic composition ((13)C, (14)C, and (15)N) of tissues from troglobitic macrofauna. Organisms that were captured by cave divers entering into spring conduits had delta(13)C values that suggested plant matter as a primary food resource (cave crayfish, -24.6 +/- 2.7 per thousand, n = 9). In contrast, delta(13)C values were significantly depleted in organisms retrieved from wells drilled into areas of the UFA remote from spring and sinkhole conduits (cave crayfish -34.7 +/- 9.8 per thousand, n = 10). Depleted (13)C values in crayfish were correlated with radiocarbon (Delta(14)C) depletion relative to modern values. The results suggest that methane-based microbial chemosynthetic pathways support organisms living in the remote interior of the aquifer, at least in part.

Concentrations of selected heavy metals in benthic diatoms and sediment in the Westerschelde Estuary

DOE Office of Scientific and Technical Information (OSTI.GOV)

Absil, M.C.P.; Scheppingen, Y. van

1996-12-31

In recent years considerable data have been compiled on heavy metal levels in biota in marine and estuarine environments. With respect to the fauna, much information is available on accumulation and effects of heavy metals in birds, fish and benthic macrofauna. Accumulation of heavy metals in aquatic flora has been studied mostly in benthic macroalgae, in particular in relation to the use as a biological monitor. The response of planktonic algal species to heavy metals has been studied extensively in cultured populations. Also. heavy metal concentrations in natural plankton have been studied. As far as we know, very few datamore » are available on the concentrations of heavy metals in the lowest benthic trophic level, the benthic microflora. It is a major food supply for numerous intertidal species, so it is obvious that microflora might play an important role in the accumulation of contaminants through coastal food chains. The aim of this research was to adjust a recently developed collection technique for benthic diatoms so that it is suitable for large-scale field studies. The method was then used to assess the concentration of the heavy metals Cd, Cu, Pb and Zn in benthic diatoms and sediments along an estuarine gradient. 18 refs., 2 figs., 1 tab.« less

Microbial eukaryotic distributions and diversity patterns in a deep-sea methane seep ecosystem.

PubMed

Pasulka, Alexis L; Levin, Lisa A; Steele, Josh A; Case, David H; Landry, Michael R; Orphan, Victoria J

2016-09-01

Although chemosynthetic ecosystems are known to support diverse assemblages of microorganisms, the ecological and environmental factors that structure microbial eukaryotes (heterotrophic protists and fungi) are poorly characterized. In this study, we examined the geographic, geochemical and ecological factors that influence microbial eukaryotic composition and distribution patterns within Hydrate Ridge, a methane seep ecosystem off the coast of Oregon using a combination of high-throughput 18S rRNA tag sequencing, terminal restriction fragment length polymorphism fingerprinting, and cloning and sequencing of full-length 18S rRNA genes. Microbial eukaryotic composition and diversity varied as a function of substrate (carbonate versus sediment), activity (low activity versus active seep sites), sulfide concentration, and region (North versus South Hydrate Ridge). Sulfide concentration was correlated with changes in microbial eukaryotic composition and richness. This work also revealed the influence of oxygen content in the overlying water column and water depth on microbial eukaryotic composition and diversity, and identified distinct patterns from those previously observed for bacteria, archaea and macrofauna in methane seep ecosystems. Characterizing the structure of microbial eukaryotic communities in response to environmental variability is a key step towards understanding if and how microbial eukaryotes influence seep ecosystem structure and function. © 2016 Society for Applied Microbiology and John Wiley & Sons Ltd.

From the litter up and the sky down: Perspectives on urban ...

EPA Pesticide Factsheets

The structure of the urban forest represents the complex product of local biophysical conditions, socio-economic milieu, people preferences and management with rare counterparts in rural forests. However, urban forest structure, as similarly observed in rural forests, affects key ecological and hydrological processes as well as the plethora of organisms regulating these processes. This seminar talk will firstly present key mechanisms regulating urban eco-hydrological processes “from a litter up” perspective. In particular, fine scale effects of urban forest structure upon i) organic matter decomposition, and comminution, ii) community-assembly of decomposers, detritivores, and ecosystem engineers (i.e. bacteria, litter-dwelling macrofauna, ants), and iii) stormwater runoff infiltration and interception will be discussed. The second part of this intervention will look at the structure of the urban forest “from a sky down” perspective. Recent findings from large scale LiDAR investigations will be presented to discuss social and biophysical drivers affecting urban forest structure at sub-continental scale, as well as short-term tree loss dynamics across residential landscapes, and how these can potentially affect eco-hydrological processes at large scale. Urban forest structure, as similarly observed in rural forests, affects key ecological and hydrological processes as well as the plethora of organisms regulating these processes.

Interaction between birds and macrofauna within food webs of six intertidal habitats of the Wadden Sea

PubMed Central

Horn, Sabine; de la Vega, Camille; Asmus, Ragnhild; Schwemmer, Philipp; Enners, Leonie; Garthe, Stefan; Binder, Kirsten; Asmus, Harald

2017-01-01

The determination of food web structures using Ecological Network Analysis (ENA) is a helpful tool to get insight into complex ecosystem processes. The intertidal area of the Wadden Sea is structured into diverse habitat types which differ in their ecological functioning. In the present study, six different intertidal habitats (i.e. cockle field, razor clam field, mud flat, mussel bank, sand flat and seagrass meadow) were analyzed using ENA to determine similarities and characteristic differences in the food web structure of the systems. All six systems were well balanced between their degree of organization and their robustness. However, they differed in their detailed features. The cockle field and the mussel bank exhibited a strong dependency on external imports. The razor clam field appeared to be a rather small system with low energy transfer. In the mud flat microphytobenthos was used as a main food source and the system appeared to be sensitive to perturbations. Bird predation was the most pronounced in the sand flat and the seagrass meadow and led to an increase in energy transfer and parallel trophic cycles in these habitats. Habitat diversity appears to be an important trait for the Wadden Sea as each subsystem seems to have a specific role in the overall functioning of the entire ecosystem. PMID:28489869

Chemosynthetic bacteria found in bivalve species from mud volcanoes of the Gulf of Cadiz.

PubMed

Rodrigues, Clara F; Webster, Gordon; Cunha, Marina R; Duperron, Sébastien; Weightman, Andrew J

2010-09-01

As in other cold seeps, the dominant bivalves in mud volcanoes (MV) from the Gulf of Cadiz are macrofauna belonging to the families Solemyidae (Acharax sp., Petrasma sp.), Lucinidae (Lucinoma sp.), Thyasiridae (Thyasira vulcolutre) and Mytilidae (Bathymodiolus mauritanicus). The delta(13)C values measured in solemyid, lucinid and thyasirid specimens support the hypothesis of thiotrophic nutrition, whereas isotopic signatures of B. mauritanicus suggest methanotrophic nutrition. The indication by stable isotope analysis that chemosynthetic bacteria make a substantial contribution to the nutrition of the bivalves led us to investigate their associated bacteria and their phylogenetic relationships based on comparative 16S rRNA gene sequence analysis. PCR-denaturing gradient gel electrophoresis analysis and cloning of bacterial 16S rRNA-encoding genes confirmed the presence of sulfide-oxidizing symbionts within gill tissues of many of the studied specimens. Phylogenetic analysis of bacterial 16S rRNA gene sequences demonstrated that most bacteria were related to known sulfide-oxidizing endosymbionts found in other deep-sea chemosynthetic environments, with the co-occurrence of methane-oxidizing symbionts in Bathymodiolus specimens. This study confirms the presence of several chemosynthetic bivalves in the Gulf of Cadiz and further highlights the importance of sulfide- and methane-oxidizing symbionts in the trophic ecology of macrobenthic communities in MV.

Baltica from the Late Precambrian to the Early Ordovician

NASA Astrophysics Data System (ADS)

Torsvik, T. H.; Cocks, L. R.

2004-05-01

Current thinking supports the existence of the Rodinia supercontinent which consolidated at perhaps 1100 to 1000 million years ago and most probably disintegrated somewhere before 800 Ma. Within the Rodinian collage, Baltica was adjacent to, and probably welded to, Laurentia, with the modern eastern (Uralian) part of Baltica conjugate with the north of Laurentia. Laurentia was in turn attached to the South American terranes of Rio Plata and Amazonia, and possibly also West Africa. Baltica became an independent terrane when it split off from Laurentia, leaving a widening Iapetus Ocean between the two. When this rifting actually commenced is a matter of dispute due to very conflicting palaeomagnetic data from both Laurentia and Baltica; however, we favor that the southern part of the Iapetus, between Laurentia and South America, opened first at about 570 Ma and that this rifting spread gradually northwards until Baltica separated from Laurentia at approximately 550 Ma, near the end of Precambrian time at 543 Ma. New palaeomagnetic and geochronological data from the 616-610 Ma Egersund Dykes (SW Baltica) place Baltica at the south pole whereas subsequent Late Precambrian to Early Cambrian poles places Baltica at lower latitudes. During the late and middle Vendian, the NW margin of Baltica changed from an extensional tectonic regime to an active margin (Timanian Orogeny) in which microcontinental blocks in the Timan-Pechora, northern Ural and Novaya Zemlya areas were united with Baltica at 550-560 Ma. Largely between Middle Cambrian and Middle Ordovician times, the whole large terrane of Baltica underwent a very substantial rotation of about 120°, the maximum rate of this rotation occurred in late Cambrian and early Ordovician times. Much of the craton of Baltica appears to have been submerged under shelf seas for long parts of this time, which lasted from 544 to 490 Ma. As a consequence the olenid trilobite fauna represent a fauna living largely in niches which were probably relatively deep on the shelf and in which the aeration was below normal, and thus similar animals are also found in comparable conditions in other terranes, such as Laurentia and Siberia. The Iapetus Ocean was at its widest at about Cambro-Ordovician boundary times, and thus Baltica was at its most isolated. The benthic invertebrate faunas of the shelf seas therefore underwent independent evolution, and the most abundant macrofauna, the trilobites and the brachiopods, were represented in Baltica not just by different species and genera but even families which were endemic to that terrane. Thus it can be safely inferred that both the Iapetus Ocean and also Tornquist's Ocean, which lay between Baltica and Gondwana, were wide enough in the early Ordovician to prevent the successful passage of larvae for a substantial proportion of the benthos.

Effects of Surface-Water Diversions on Habitat Availability for Native Macrofauna, Northeast Maui, Hawaii

USGS Publications Warehouse

Gingerich, Stephen B.; Wolff, Reuben H.

2005-01-01

Effects of surface-water diversions on habitat availability for native stream fauna (fish, shrimp, and snails) are described for 21 streams in northeast Maui, Hawaii. Five streams (Waikamoi, Honomanu, Wailuanui, Kopiliula, and Hanawi Streams) were chosen as representative streams for intensive study. On each of the five streams, three representative reaches were selected: (1) immediately upstream of major surface-water diversions, (2) midway to the coast, and (3) near the coast. This study focused on five amphidromous native aquatic species (alamoo, nopili, nakea, opae, and hihiwai) that are abundant in the study area. The Physical Habitat Simulation (PHABSIM) System, which incorporates hydrology, stream morphology and microhabitat preferences to explore relations between streamflow and habitat availability, was used to simulate habitat/discharge relations for various species and life stages, and to provide quantitative habitat comparisons at different streamflows of interest. Hydrologic data, collected over a range of low-flow discharges, were used to calibrate hydraulic models of selected transects across the streams. The models were then used to predict water depth and velocity (expressed as a Froude number) over a range of discharges up to estimates of natural median streamflow. The biological importance of the stream hydraulic attributes was then assessed with the statistically derived suitability criteria for each native species and life stage that were developed as part of this study to produce a relation between discharge and habitat availability. The final output was expressed as a weighted habitat area of streambed for a representative stream reach. PHABSIM model results are presented to show the area of estimated usable bed habitat over a range of streamflows relative to natural conditions. In general, the models show a continuous decrease in habitat for all modeled species as streamflow is decreased from natural conditions. The PHABSIM modeling results from the intensively studied streams were normalized to develop relations between the relative amount of diversion from a stream and the resulting relative change in habitat in the stream. These relations can be used to estimate changes in habitat for diverted streams in the study area that were not intensively studied. The relations indicate that the addition of even a small amount of water to a dry stream has a significant effect on the amount of habitat available. Equations relating stream base-flow changes to habitat changes can be used to provide an estimate of the relative habitat change in the study area streams for which estimates of diverted and natural median base flow have been determined but for which detailed habitat models were not developed. Stream water temperatures, which could have an effect on stream ecology and taro cultivation, were measured in five streams in the study area. In general, the stream temperatures measured at any of the monitoring sites were not elevated enough, based on currently available information, to adversely effect the growth or mortality of native aquatic macrofauna or to cause wetland taro to be susceptible to fungi and associated rotting diseases.

Leakage of CO2 from sub-seafloor CO2 storage sites to the seabed; Impacts on sediment microorganisms and geochemical parameters during in situ and laboratory leakage experiments

NASA Astrophysics Data System (ADS)

Reigstad, L. J.; Hannisdal, B.; Hoffmann, F. U.; Sweetman, A. K.; Baumberger, T.; Eickmann, B.; Røy, H.; Thorseth, I. H.; Pedersen, R. B.

2013-12-01

Since 1996, 14 million tons of CO2 extracted from natural gas have been injected into the Utsira Formation, a saline aquifer at ~1000 m depth in the North Sea. The injected CO2 covers today an area of 4 x 2 km2. At present, there are three international treaties protecting the oceans, and all three allow CO2 storage in sub-seabed geological formations. One of these, the EU Directive 2009/31, states that monitoring must take place before, during and after CO2 storage in order to detect leakage of CO2 and significant adverse effects on the surrounding environment. However, few environmental studies have investigated the potential impacts of a CO2 leakage on the microbial life and geochemical conditions in seafloor sediment. To remedy this, we performed two experiments with abrupt CO2 acidification on the top 10 cm of the seafloor close to the North Sea storage site: 1) One laboratory CO2 acidification experiment on undisturbed sediment cores from the seafloor overlying the CO2 storage site (80 m water depth). The continuous flow of CO2 acidified seawater (pH 6.4) with 20 000 μatm pCO2 over the cores lasted for 1.5 months with sediment core terminations at regular intervals. 2) In situ CO2 acidification experiments carried out on the seafloor at 350 m water depth, with life span of 40 hours and exposure to 20 000 μatm pCO2. Both experiments showed increased O2 consumption in the water overlying the CO2 acidified sediment relative to the control sediment, indicating a rise in metabolic activity due to the treatment. After about 12 hours of acidification and throughout the laboratory experimental period, an increase in macrofauna burial activity could be seen, with dead/dying macrofauna appearing on the sediment surface. The pyrosequencing amplicon dataset obtained after bacterial and archaeal 16S rRNA amplification (RNA level) was subjected to multivariate analyses (PCA, NMDS), revealing changes in the active community on phylum, class and OTU levels. Changes were detected on all three levels in all depths investigated, but the response to acidification appeared among less-abundant prokaryotic groups in the sediment, rather than the numerically dominant groups. Quantification of the 16S rRNA genes (DNA level) indicated no increase in cell numbers in response to the treatment. However, an increase in the in situ microbial sulfate reduction rates and/or expression of marker genes for sulfate reduction (RNA level) was discovered. Analyses of marker gene expression for other prokaryotic metabolisms will be presented as well as correlations between specific organisms and geochemical parameters. Within the limitations of the experimental set up, our studies indicate that a leakage of CO2 from a sub-seafloor storage site may not dramatically change the composition of the active microbial community in the seabed sediment though we did register activity changes in some metabolisms.

12 years of irrigation in a drought stressed pine forest speeds up carbon cycling and alters the soil biome but has negligible effects on soil organic matter storage

NASA Astrophysics Data System (ADS)

Hagedorn, Frank; Hartmann, Martin; Brunner, Ivano; Rigling, Andreas; Herzog, Claude; Schaub, Marcus; Frey, Beat

2017-04-01

Inneralpine valleys are experiencing repeated summer droughts, which have caused a die-back of pine forests since the 1990s. Drought limits the metabolic activity and hence C cycling in the plant and soil system. The net effects of drought on soil organic matter (SOM) storage is, however, ambiguous as drought affects both C inputs and outputs. Moreover, in the long-term, water limitation is also altering above- and belowground diversity due to species-dependent resistance and adaptation to drought. In our study, we explored how ten years of irrigation of a water-limited pine forest in the central European Alps altered above- and belowground diversity and C cycling in the plant and soil systems. The decadal long irrigation during summer time strongly increased ecosystem productivity with litter fall and fine root biomass being increased by +50 and +40%, respectively. At the same time, soil CO2 efflux was stimulated by 60%, indicating that the removal of water limitation enhanced both the inputs and outputs of C into soils. The accelerated C cycling was also mirrored by compositional shifts in the soil microbiome. 454-pyrosequencing of ribosomal marker genes indicated that irrigation promoted bacteria and fungi with more copiotrophic life style strategies, that are typical for nutrient-rich conditions associated with a higher decomposition. Determination of SOM pools revealed a C loss in the organic layer under irrigation (-900 gC m-2) but a C gain in the mineral soil (+970 gC m-2), resulting in a negligible net effect. The likely mechanisms for the altered vertical SOM distribution might be (1) an accelerated mineralization of litter in conjunction with higher C inputs from the rhizosphere and/or (2) an increased incorporation of litter in the mineral soil as suggested by a litter bag experiment showing a stimulated activity of the macrofauna with a 5-fold increase of the earthworm density. In summary, our long-term irrigation experiment revealed that the removal of water limitation during summer in a drought-prone pine forest strongly altered C fluxes and the belowground community composition. However, the net effect on SOM stocks was negligible due to a balancing out of C in- and outputs.

Behaviour of Talitrus saltator (Crustacea: Amphipoda) on a rehabilitated sandy beach on the European Atlantic Coast (Portugal)

NASA Astrophysics Data System (ADS)

Bessa, Filipa; Rossano, Claudia; Nourisson, Delphine; Gambineri, Simone; Marques, João Carlos; Scapini, Felicita

2013-01-01

Environmental and human controls are widely accepted as the main structuring forces of the macrofauna communities on sandy beaches. A population of the talitrid amphipod Talitrus saltator (Montagu, 1808) was investigated on an exposed sandy beach on the Atlantic coast of Portugal (Leirosa beach) to estimate orientation capabilities and endogenous rhythms in conditions of recent changes in the landscape (artificial reconstruction of the foredune) and beach morphodynamics (stabilization against erosion from the sea). We tested sun orientation of talitrids on the beach and recorded their locomotor activity rhythms under constant conditions in the laboratory. The orientation data were analysed with circular statistics and multiple regression models adapted to angular distributions, to highlight the main factors and variables influencing the variation of orientation. The talitrids used the sun compass, visual cues (landscape and sun visibility) to orient and the precision of orientation varied according to the tidal regime (rising or ebbing tides). A well-defined free-running rhythm (circadian with in addition a bimodal rhythmicity, likely tidal) was highlighted in this population. This showed a stable behavioural adaptation on a beach that has experienced a process of artificial stabilization of the dune through nourishment actions over a decade. Monitoring the conditions of such dynamic environments and the resilience capacity of the inhabiting macroinfauna is a main challenge for sandy beach ecologists.

Deep sea habitats in the chemical warfare dumping areas of the Baltic Sea.

PubMed

Czub, Michał; Kotwicki, Lech; Lang, Thomas; Sanderson, Hans; Klusek, Zygmunt; Grabowski, Miłosz; Szubska, Marta; Jakacki, Jaromir; Andrzejewski, Jan; Rak, Daniel; Bełdowski, Jacek

2018-03-01

The Baltic Sea is a severely disturbed marine ecosystem that has previously been used as a dumping ground for Chemical Warfare Agents (CW). The presence of unexploded underwater ordnance is an additional risk factor for offshore activities and an environmental risk for the natural resources of the sea. In this paper, the focus is on descriptions of the marine habitat based on the observations arising from studies linked to the CHEMSEA, MODUM and DAIMON projects. Investigated areas of Bornholm, Gotland and Gdańsk Deeps are similarly affected by the Baltic Sea eutrophication, however, at depths greater than 70m several differences in local hydrological regimes and pore-water heavy metal concentrations between those basins were observed. During the lifespan of presented studies, we were able to observe the effects of Major Baltic Inflow, that started in December 2014, on local biota and their habitats, especially in the Bornholm Deep area. Reappearance of several meiofauna taxa and one macrofauna specimen was observed approximately one year after this phenomenon, however it's ecological effects already disappeared in March 2017. According to our findings and to the EUNIS Habitat Classification, the three reviewed areas should be characterized as Deep Sea Muddy Sands, while the presence of suspicious bomb-like objects both beneath and on top of the sediments confirms their CW dumpsite status. Copyright © 2017 Elsevier B.V. All rights reserved.

The tardigrade fauna of Australian marine caves: with descriptions of nine new species of Arthrotardigrada.

PubMed

Jørgensen, Aslak; Boesgaard, Tom M; Møbjerg, Nadja; Kristensen, Reinhardt M

2014-05-28

Marine caves are known to support a rich macrofauna; however, few studies have focused on meiofauna. Marine cave meiofaunal tardigrades have been reported from Japan and the Mediterranean Sea and a preliminary list of species including a redescription of Actinarctus neretinus Grimaldi de Zio, D'Addabbo Gallo, Morone De Lucia, Vaccarella and Grimaldi, 1982 was reported from Fish Rock Cave and Jim's Cave on the coast of Australia. This study is the fourth in a series describing the unique meiofauna in two Australian submarine caves located off the coast of New South Wales, describing nine new species.        Only 67 tardigrades were collected from the two caves, yet these contained a high diversity of at least 16 different species which are quite different in the two caves. The fauna includes nine arthrotardigrade genera: Actinarctus, Batillipes, Dipodarctus, Halechiniscus, Raiarctus, Styraconyx, Tanarctus, Tholoarctus, and Wingstrandarctus. This fauna is different from that reported for the high energy beaches along the East Coast of Australia.        We describe nine new species comprising a single batillipedid and eight halechiniscids: Batillipes solitarius nov. sp., Dipodarctus australiensis nov. sp., Dipodarctus susannae nov. sp., Raiarctus jesperi nov. sp., Raiarctus katrinae nov. sp., Tanarctus hirsutospinosus nov. sp., Tholoarctus oleseni nov. sp., Wingstrandarctus stinae nov. sp. and Wingstrandarctus unsculptus nov. sp.

Global patterns and predictions of seafloor biomass using random forests.

PubMed

Wei, Chih-Lin; Rowe, Gilbert T; Escobar-Briones, Elva; Boetius, Antje; Soltwedel, Thomas; Caley, M Julian; Soliman, Yousria; Huettmann, Falk; Qu, Fangyuan; Yu, Zishan; Pitcher, C Roland; Haedrich, Richard L; Wicksten, Mary K; Rex, Michael A; Baguley, Jeffrey G; Sharma, Jyotsna; Danovaro, Roberto; MacDonald, Ian R; Nunnally, Clifton C; Deming, Jody W; Montagna, Paul; Lévesque, Mélanie; Weslawski, Jan Marcin; Wlodarska-Kowalczuk, Maria; Ingole, Baban S; Bett, Brian J; Billett, David S M; Yool, Andrew; Bluhm, Bodil A; Iken, Katrin; Narayanaswamy, Bhavani E

2010-12-30

A comprehensive seafloor biomass and abundance database has been constructed from 24 oceanographic institutions worldwide within the Census of Marine Life (CoML) field projects. The machine-learning algorithm, Random Forests, was employed to model and predict seafloor standing stocks from surface primary production, water-column integrated and export particulate organic matter (POM), seafloor relief, and bottom water properties. The predictive models explain 63% to 88% of stock variance among the major size groups. Individual and composite maps of predicted global seafloor biomass and abundance are generated for bacteria, meiofauna, macrofauna, and megafauna (invertebrates and fishes). Patterns of benthic standing stocks were positive functions of surface primary production and delivery of the particulate organic carbon (POC) flux to the seafloor. At a regional scale, the census maps illustrate that integrated biomass is highest at the poles, on continental margins associated with coastal upwelling and with broad zones associated with equatorial divergence. Lowest values are consistently encountered on the central abyssal plains of major ocean basins The shift of biomass dominance groups with depth is shown to be affected by the decrease in average body size rather than abundance, presumably due to decrease in quantity and quality of food supply. This biomass census and associated maps are vital components of mechanistic deep-sea food web models and global carbon cycling, and as such provide fundamental information that can be incorporated into evidence-based management.

Effect of environmental conditions on variation in the sediment-water interface created by complex macrofaunal burrows on a tidal flat

NASA Astrophysics Data System (ADS)

Koo, Bon Joo; Kwon, Kae Kyoung; Hyun, Jung-Ho

2007-11-01

We quantified the increase in the sediment-water interface created by the burrowing activities of the resident macrofaunal community and its variation with respect to the physical conditions of the habitat on a tidal fat. We investigated environmental factors and dimensions of macrofaunal burrows with respect to tidal height and vegetation during spring and summer at three sites. A resin-casting method was used to quantify the dimensions of all burrows at each site. The dimensions of macrofaunal burrows varied both temporally and spatially and the increase in the sediment-water interface reached a maximum of 311%, ranging from 20 to 255% under different habitat conditions. The sediment-water interface depended on the duration of exposure resulting from tidal height, increased temperatures resulting from seasonality, and marsh plant density. Burrows were deeper and more expansive at both higher tidal levels and higher temperatures in summer. Burrow dimensions were sharply reduced with the disappearance of adult macrofauna in areas where the roots of the marsh plant Suaeda japonica were dense. The significance of this study lies in quantifying the burrow dimensions of the entire macrofaunal community, rather than just a single population, and confirming their spatial and temporal variation with respect to physical conditions of the habitat. Environmental factors responsible for variation in burrow dimensions are discussed.

Animal diversity in Baltic rocky shore macroalgae: can Cladophora glomerata compensate for lost Fucus vesiculosus?

NASA Astrophysics Data System (ADS)

Kraufvelin, Patrik; Salovius, Sonja

2004-10-01

The substitution of canopy-forming perennial algae by annual filamentous algae is a common phenomenon on eutrophicated rocky shores with potential consequences for marine biodiversity. In the upper littoral of the northern Baltic Sea, this process is exemplified by decreased occurrence of the brown alga Fucus vesiculosus and increased amounts of filamentous algae (e.g. Cladophora glomerata and Pilayella littoralis). In this study, macrofauna communities of F. vesiculosus and C. glomerata during summer have been compared and the effects on littoral macroinvertebrates of a total or partial replacement of F. vesiculosus by C. glomerata have been estimated. The animal abundance and biomass were higher in C. glomerata than in corresponding amounts of F. vesiculosus (g dwt). Similar results were also obtained when animal abundance and biomass were extrapolated to algal cover per m 2 rocky substrate in the study area. Margalef's species richness was, on the other hand, higher in F. vesiculosus, whereas the Shannon-Wiener diversity was the same. The results indicate that C. glomerata maintains a high diversity of macroinvertebrates in the upper littoral zone of the northern Baltic Sea during summer. A possible substitution of F. vesiculosus by C. glomerata does not immediately affect macroinvertebrate diversity negatively in the littoral zone, although, it is difficult to assess the full consequences due to lack of comparable algal data at wider temporal and spatial scales.

Benthic impacts of intertidal oyster culture, with consideration of taxonomic sufficiency.

PubMed

Forrest, Barrie M; Creese, Robert G

2006-01-01

An investigation of the impacts from elevated intertidal Pacific oyster culture in a New Zealand estuary showed enhanced sedimentation beneath culture racks compared with other sites. Seabed elevation beneath racks was generally lower than between them, suggesting that topographic patterns more likely result from a local effect of rack structures on hydrodynamic processes than from enhanced deposition. Compared with control sites, seabed sediments within the farm had a greater silt/clay and organic content, and a lower redox potential and shear strength. While a marked trend in macrofaunal species richness was not evident, species composition and dominance patterns were consistent with a disturbance gradient, with farm effects not evident 35 m from the perimeter of the racks. Of the environmental variables measured, sediment shear strength was most closely associated with the distribution and density of macrofauna, suggesting that human-induced disturbance from farming operations may have contributed to the biological patterns. To evaluate the taxonomic sufficiency needed to document impacts, aggregation to the family level based on Linnean classification was compared with an aggregation scheme based on ;general groups' identifiable with limited taxonomic expertise. Compared with species-level analyses, spatial patterns of impact were equally discernible at both aggregation levels used, provided density rather than presence/absence data were used. Once baseline conditions are established and the efficacy of taxonomic aggregation demonstrated, a ;general group' scheme provides an appropriate and increasingly relevant tool for routine monitoring.

Historical macrobenthic community assemblages in the Avilés Canyon, N Iberian Shelf: Baseline biodiversity information for a marine protected area

NASA Astrophysics Data System (ADS)

Louzao, Maite; Anadón, Nuria; Arrontes, Julio; Álvarez-Claudio, Consuelo; Fuente, Dulce María; Ocharan, Francisco; Anadón, Araceli; Acuña, José Luis

2010-02-01

Deep-sea ecosystems are highly diverse, and European countries seek to protect these environments by identifying conservation targets. One of these is the Avilés Canyon, southern Bay of Biscay, NE Atlantic, Spain. We present the first analysis of historical benthic communities (1987-1988) of this canyon ecosystem, which is a valuable source of biodiversity baseline information. We found 810 taxa divided in five main macrobenthic assemblages, showing a highly diverse benthic community. Bathymetry was the major structuring agent of benthic community, separating shallow (assemblages I and II, 31 to 307 m depth) from deep stations (assemblages III, IV and V, 198 to 1400 m depth). Especially diverse was assemblage IV, located at the easternmost part of the continental slope (378-1100 m depth) where we found reef-forming corals Lophelia pertusa and Madrepora oculata. These and other communities (sea-pens [Order Pennatulacea, Phylum Cnidaria] and burrowing macrofauna) represent key habitats in NE Atlantic continental slopes, which are currently threatened. The present dataset has produced the most comprehensive assessment of diversity in this area to date, focusing on the taxonomic groups which may best reflect the health of the marine ecosystem and supporting previous studies which indicate that the continental slope of the southern Bay of Biscay hosts key benthic habitats.

Global Patterns and Predictions of Seafloor Biomass Using Random Forests

PubMed Central

Wei, Chih-Lin; Rowe, Gilbert T.; Escobar-Briones, Elva; Boetius, Antje; Soltwedel, Thomas; Caley, M. Julian; Soliman, Yousria; Huettmann, Falk; Qu, Fangyuan; Yu, Zishan; Pitcher, C. Roland; Haedrich, Richard L.; Wicksten, Mary K.; Rex, Michael A.; Baguley, Jeffrey G.; Sharma, Jyotsna; Danovaro, Roberto; MacDonald, Ian R.; Nunnally, Clifton C.; Deming, Jody W.; Montagna, Paul; Lévesque, Mélanie; Weslawski, Jan Marcin; Wlodarska-Kowalczuk, Maria; Ingole, Baban S.; Bett, Brian J.; Billett, David S. M.; Yool, Andrew; Bluhm, Bodil A.; Iken, Katrin; Narayanaswamy, Bhavani E.

2010-01-01

A comprehensive seafloor biomass and abundance database has been constructed from 24 oceanographic institutions worldwide within the Census of Marine Life (CoML) field projects. The machine-learning algorithm, Random Forests, was employed to model and predict seafloor standing stocks from surface primary production, water-column integrated and export particulate organic matter (POM), seafloor relief, and bottom water properties. The predictive models explain 63% to 88% of stock variance among the major size groups. Individual and composite maps of predicted global seafloor biomass and abundance are generated for bacteria, meiofauna, macrofauna, and megafauna (invertebrates and fishes). Patterns of benthic standing stocks were positive functions of surface primary production and delivery of the particulate organic carbon (POC) flux to the seafloor. At a regional scale, the census maps illustrate that integrated biomass is highest at the poles, on continental margins associated with coastal upwelling and with broad zones associated with equatorial divergence. Lowest values are consistently encountered on the central abyssal plains of major ocean basins The shift of biomass dominance groups with depth is shown to be affected by the decrease in average body size rather than abundance, presumably due to decrease in quantity and quality of food supply. This biomass census and associated maps are vital components of mechanistic deep-sea food web models and global carbon cycling, and as such provide fundamental information that can be incorporated into evidence-based management. PMID:21209928

Ecology and biogeography of megafauna and macrofauna at the first known deep-sea hydrothermal vents on the ultraslow-spreading Southwest Indian Ridge

PubMed Central

Copley, J. T.; Marsh, L.; Glover, A. G.; Hühnerbach, V.; Nye, V. E.; Reid, W. D. K.; Sweeting, C. J.; Wigham, B. D.; Wiklund, H.

2016-01-01

The Southwest Indian Ridge is the longest section of very slow to ultraslow-spreading seafloor in the global mid-ocean ridge system, but the biogeography and ecology of its hydrothermal vent fauna are previously unknown. We collected 21 macro- and megafaunal taxa during the first Remotely Operated Vehicle dives to the Longqi vent field at 37° 47′S 49° 39′E, depth 2800 m. Six species are not yet known from other vents, while six other species are known from the Central Indian Ridge, and morphological and molecular analyses show that two further polychaete species are shared with vents beyond the Indian Ocean. Multivariate analysis of vent fauna across three oceans places Longqi in an Indian Ocean province of vent biogeography. Faunal zonation with increasing distance from vents is dominated by the gastropods Chrysomallon squamiferum and Gigantopelta aegis, mussel Bathymodiolus marisindicus, and Neolepas sp. stalked barnacle. Other taxa occur at lower abundance, in some cases contrasting with abundances at other vent fields, and δ13C and δ15N isotope values of species analysed from Longqi are similar to those of shared or related species elsewhere. This study provides baseline ecological observations prior to mineral exploration activities licensed at Longqi by the United Nations. PMID:27966649

NW Black Sea ecosystems recovery from former severe seasonal hypoxia and effect on macrofauna

NASA Astrophysics Data System (ADS)

Gomoiu, Marian-Traian; Begun, Tatiana; Teaca, Adrian

2013-04-01

The benthos researches carried out in the last decade on the NW Black Sea shelf established the transitional process of the bottom communities, from the severe disturbed state resulted from seasonal hypoxia of high eutrophication from 1970-2000 period towards a new state. The authors, with their expertise achieved in the framework of several national and EU FP6&7 projects (SESAME, HYPOX, PERSEUS), analyzing more than 600 quantitative samples, consider the benthic associations influenced mainly by the Danube River discharge being characterized as follows: • decrease in the specific diversity (e.g. Mollusca - from 170 species in the 1960s - 1970s to 70 species in the present in NW Black Sea); • loss or diminishing of some habitat areas (typical habitat with Zostera, Phyllophora, Cystoseira, Barnea, Donacilla etc.); • increase in the numeric abundance and biomass of some specific benthic populations (Melinna, Alitta, Dipolydora etc.); • loss or reduction of some specific populations (Abra prismatica, Spisula subtruncata, Chamelia gallina etc.); • replacement of some strong and quite large benthic populations by metapopulation of small extension; • diminution of the biofilter strength by reduction of the filter - feeder populations; • qualitative and quantitative worsening of benthic biological resources, especially molluscs - forms playing an important ecological part and with great economic importance (mussel Mytilus galloprovincialis, soft-shell clam Mya arenaria, veined rapa whelk Rapana venosa); • thriving of opportunistic forms (especially worms populations causing sediment bioturbation - Melinna palmata, Heteromastus filiformis) and, temporarily, some exotic species recently pervading Black Sea (Mya, Anadara, Rapana etc.); • great quantitative fluctuations of all benthic populations; • occurrence of some weak sing of ecosystem recovery. However, recovery of the benthic ecosystem appears to be less certain although an improvement on regeneration of macrophytobenthos and macrozoobenthos is suggested by the available data. The process of recovery of the Black Sea will take a long time and will require the implementation of all measures envisaged by the Black Sea Strategic Action Plan as well as some future provisions. The process will be further complicated by the fact that scientific knowledge and information on many processes and phenomena, which are needed for policy and decision making, are missing. The opinion of authors concerning the future conservation of the Black Sea biodiversity in the context of climate change and the actual state of socio-economic system of the Black Sea Region (environment-related science and policy) is that to have in mind the following key aspects: • facts are uncertain (lack of knowledge of the impacts of some mitigation and adaptation measures on biodiversity as a whole and some habitats or taxa in particular and the transfer of "best practices" should be undertaken with caution in order to ensure their applicability to a new situation); • natural and economic values in dispute, • stakes high and decisions urgent. Keywords: Black Sea, benthos, ecological state.

Food and disturbance effects on Arctic benthic biomass and production size spectra

NASA Astrophysics Data System (ADS)

Górska, Barbara; Włodarska-Kowalczuk, Maria

2017-03-01

Body size is a fundamental biological unit that is closely coupled to key ecological properties and processes. At the community level, changes in size distributions may influence energy transfer pathways in benthic food webs and ecosystem carbon cycling; nevertheless they remain poorly explored in benthic systems, particularly in the polar regions. Here, we present the first assessment of the patterns of benthic biomass size spectra in Arctic coastal sediments and explore the effects of glacial disturbance and food availability on the partitioning of biomass and secondary productivity among size-defined components of benthic communities. The samples were collected in two Arctic fjords off west Spitsbergen (76 and 79°N), at 6 stations that represent three regimes of varying food availability (indicated by chlorophyll a concentration in the sediments) and glacial sedimentation disturbance intensity (indicated by sediment accumulation rates). The organisms were measured using image analysis to assess the biovolume, biomass and the annual production of each individual. The shape of benthic biomass size spectra at most stations was bimodal, with the location of a trough and peaks similar to those previously reported in lower latitudes. In undisturbed sediments macrofauna comprised 89% of the total benthic biomass and 56% of the total production. The lower availability of food resources seemed to suppress the biomass and secondary production across the whole size spectra (a 6-fold decrease in biomass and a 4-fold decrease in production in total) rather than reshape the spectrum. At locations where poor nutritional conditions were coupled with disturbance, the biomass was strongly reduced in selected macrofaunal size classes (class 10 and 11), while meiofaunal biomass and production were much higher, most likely due to a release from macrofaunal predation and competition pressure. As a result, the partitioning of benthic biomass and production shifted towards meiofauna (39% of biomass and 83% of production), which took over the benthic metazoan key-player role in terms of processing organic matter in sediments. Macrofaunal nematodes composed a considerable portion of the benthic community in terms of biomass (up to 9%) and production (up to 12%), but only in undisturbed sediments with high organic matter content. Our study indicates that food availability and disturbance controls the total bulk and partitioning of biomass and production among the size classes in Arctic benthic communities.

Roberts Bank: Ecological crucible of the Fraser River estuary

NASA Astrophysics Data System (ADS)

Sutherland, Terri F.; Elner, Robert W.; O'Neill, Jennifer D.

2013-08-01

Roberts Bank, part of the Fraser River delta system on Canada's Pacific coast, is a dynamic estuarine environment supporting important fisheries as well as internationally significant populations of migratory shorebirds. The 8000 ha bank environment comprises a complex of riparian boundaries, intertidal marshes, mud and sand flats, eelgrass meadows, macroalgae and biofilms. Anthropogenic developments (a ferry causeway in 1961 and a port causeway in 1969) have been responsible for changes in tidal flow patterns, tidal elevation, sediment transport and the net expansion of eelgrass beds. The goals of the present study were to (1) directly compare geotechnical properties spanning each side of the coalport causeway, and (2) enhance our understanding of the intercauseway ecosystem under a high-resolution sampling design. Sediment properties (grain size, porosity, organic content, and chlorophyll) and biological communities (eelgrass, macrofauna (0.5-1.0 mm) and meiofauna (0.063-0.5 mm)) were surveyed in 1997 at three stations outside the intercauseway area and three lateral transects spanning the intercauseway tidal flat at tidal heights representing three different habitats: biofilm, Zostera japonica, and Zostera marina. A fine-silt organic-rich porous deposit was observed on the shoreward north side of the coalport causeway relative to the south counterpart, suggesting that consolidation and erosion processes could likely not keep pace with the deposition of Fraser River silt. High chlorophyll levels were found in the protected shoreward northern border of the ferry causeway where fine sands dominate and higher water transparency exists, owing to the redirection of the silt-laden river plume by the coalport causeway. Principle Components Analysis revealed a positive relationship between these porous, organic-rich sediments and cumacean abundance in all regions where eelgrass was absent, including the north side of the coalport causeway. Further, a positive relationship was found between biofilm components (chlorophyll and silt), polydora, and harpacticoid copepod abundance, which, together with cumaceans, are food for Western Sandpipers, Calidris mauri. Finally, 52% of the intercauseway variation was explained by direct correlations between eelgrass attributes and fauna consisting of bivalves, caprellids, and harpacticoid copepods (root biomass, leaf area index), the latter being prey for juvenile salmon which depend on eelgrass beds as rearing habitat. These habitats are vulnerable to changes in tidal flow patterns, tidal elevation, sediment transport, and water clarity that could be caused by future port development and/or sea level rise in response to climate change.

Response of benthic foraminifera to phytodetritus in the eastern Arabian Sea under low oxygen conditions

NASA Astrophysics Data System (ADS)

Enge, Annekatrin; Wukovits, Julia; Wanek, Wolfgang; Watzka, Margarete; Witte, Ursula; Hunter, William; Heinz, Petra

2016-04-01

At water depths between 100 and 1500 m a permanent Oxygen Minimum Zone (OMZ) impinges on the sea floor in the eastern Arabian Sea, exposing benthic organisms to anoxic to suboxic conditions. The flux of organic matter to the sea floor is relatively high at these depths but displays seasonal variation. Deposition of relatively fresh phytodetrital material (phytoplankton remains) can occur within a short period of time after monsoon periods. Several organism groups including foraminifera are involved to different extent in the processing of phytodetritus in the OMZs of the northern Arabian Sea. A series of in situ feeding experiments were performed to study the short-term processing (< 11 days) of organic carbon, nitrogen and nutritional demands of foraminifera at different oxygen concentrations on the continental margin in the eastern Arabian Sea. For the experiments, a single pulse of isotopically labeled phytodetritus was added to the sediment along a depth transect (540-1100 m) on the Indian Margin, covering the OMZ core and the lower OMZ boundary region. Uptake of phytodetritus within 4 days shows the relevance of phytodetritus as food source for foraminifera. Lower content of phytodetrital carbon recorded in foraminifera from more oxygenated depths shows greater food uptake by foraminifera in the OMZ core than in the OMZ boundary region. The foraminiferal assemblage living under almost anoxic conditions in the OMZ core is dominated by species typically found in eutroph environments (such as Uvigerinids) that are adapted to high flux of organic matter. The elevated carbon uptake can also result from missing food competition by macrofauna or from greater energy demand in foraminifera to sustain metabolic processes under hypoxic stress. Variable levels and ratios of phytodetrital carbon and nitrogen indicate specific nutritional demands and storage of food-derived nitrogen in some foraminifera species under near anoxia where the mean phytodetrital nitrogen content in foraminifera was elevated. In summary, foraminifera dominate the short-term processing of phytodetritus by fauna in the OMZ core but are less important in the lower OMZ boundary region of the Indian margin as a result of biological interactions and changes in the distribution of individual foraminiferal species.

Juliana Lake: A Benghazi Wetland In Distress!

NASA Astrophysics Data System (ADS)

Abdulsamad, Esam O.; Elbabour, Mansour M.

2013-04-01

Of all the remaining natural habitats of Benghazi's urban area (NE Libya), perhaps the most threatened are its karst lakes and coastal salt marshes (locally known as Sebkhas). Juliana Lake stands out as one example of a fragile ecosystem that is steadily shrinking and exposed to dredging and, consequently, possible damage to its aquatic organisms, and the inevitable loss of its renowned biodiversity. Several 19th & 20th-century traveler's sketches and maps, soil maps, photographs and satellite images provide the bases for change in the size and magnitude of the lake and its adjacent areas over time. The study also includes an assessment of the sediment composition and texture of material accumulating at the bottom of the lake. These sediments are composed essentiality of mixtures of Sebkha sediments such as salty clay, silt, and clayey sand. The sediments at the surface and around the Juliana Lake, however, are represented by quite soft whitish to yellowish and scattered patchy limestones of unknown affinity. Terra-rossa (reddish soil) and Quaternary caliche are present also but calcarenites (clastic limestone) cover considerable part of the studied area. The bio-micro components of these sediments are described and a number of small-sized benthic foraminifera have been identified. Macrofauna, which are primarily presented by recent benthic seashells belonging to phylum mollusca, have also been investigated and several species have been identified to the species level wherever possible. Other calcareous biotic components are predominantly shell fragments of molluscs, bryozoans, echinoderms and calcareous coralline red algae. It is concluded that the distribution, diversity and abundance of the total benthic organisms recovered in this survey reflect that the local habitat of the Juliana Lake were rich in nutrients and consequently providing an important food source for fishes, birds, and mammals. In fact, without these benthic organisms, these larger animals would not be able to survive. Finally, it is recommended that more specialized and detailed landscape ecological studies need to be undertaken by specialists to fully assess the peculiarities of Juliana Lake. Similar survey work should also be completed for other wetland natural habitats in the region to fully understand their original functions and values, and assess recent alteration trends and consequences.

Bacterial Diets of Primary Consumers at Hydrothermal Vents

NASA Astrophysics Data System (ADS)

Govenar, B.; Shank, T. M.

2008-12-01

Chemical energy produced by mixing hydrothermal fluids and seawater supports dense biological communities on mid-ocean ridges. The base of the food web at deep-sea hydrothermal vents is formed by chemolithoautotrophic bacteria that use the energy from the oxidation of reduced chemicals to fix inorganic carbon into simple sugars. With the exception of a few species that have chemolithoautotropic bacterial symbionts, most of the vent-endemic macrofauna are heterotrophs that feed on free-living bacteria, protists, and other invertebrates. The most abundant and diverse group of primary consumers in hydrothermal vent communities belong to the Gastropoda, particularly the patellomorph limpets. Gastropod densities can be as high as 2000 individuals m-2, and there can be as many as 13 species of gastropods in a single aggregation of the siboglinid tubeworm Riftia pachyptila and more than 40 species along the East Pacific Rise. Some gastropods are ubiquitous and others are found in specific microhabitats, stages of succession, or associated with different foundation species. To determine the mechanisms of species coexistence (e.g. resource partitioning or competition) among hydrothermal vent primary consumers and to track the flow of energy in hydrothermal vent communities, we employed molecular genetic techniques to identify the gut contents of four species of co-occurring hydrothermal vent gastropods, Eulepetopsis vitrea, Lepetodrilus elevatus, Lepetodrilus ovalis and Lepetodrilus pustulosus, collected from a single diffuse-flow hydrothermal vent site on the East Pacific Rise. Unique haplotypes of the 16S gene that fell among the epsilon-proteobacteria were found in the guts of every species, and two species had gut contents that were similar only to epsilon-proteobacteria. Two species had gut contents that also included haplotypes that clustered with delta-proteobacteria, and one species had gut contents that clustered with alpha- proteobacteria. Differences in the diets of these four hydrothermal vent gastropods may reflect microhabitat conditions where these species typically occur or where they were located at the time of the collection. Results from this work provide insights to the "bottom-up" regulation of primary consumers and tracking chemical fluxes through biological communities at hydrothermal vents.

Benthic oxygen consumption on continental shelves off eastern Canada

NASA Astrophysics Data System (ADS)

Grant, Jonathan; Emerson, Craig W.; Hargrave, Barry T.; Shortle, Jeannette L.

1991-08-01

The consumption of phytoplankton production by the benthos is an important component of organic carbon budgets for continental shelves. Sediment texture is a major factor regulating benthic processes because fine sediment areas are sites of enhanced deposition from the water column, resulting in increased organic content, bacterial biomass and community metabolism. Although continental shelves at mid- to high latitudes consist primarily of coarse relict sediments ( PIPER, Continental Shelf Research, 11, 1013-1035), shelf regions of boreal and subarctic eastern Canada contain large areas of silt and clay sediments ( FADER, Continental Shelf Research, 11, 1123-1153). We collated estimates of benthic oxygen consumption in coarse (<20% silt-clay, <0.5% organic matter) and fine sediments (20% silt-clay, 0.5% organic matter) for northwest Atlantic continental shelves including new data for Georges Bank, the Scotian Shelf, the Grand Banks of Newfoundland and Labrador Shelf. Estimates were applied to the areal distribution of sediment type on these shelves to obtain a general relationship between sediment texture and benthic carbon consumption. Mean benthic oxygen demand was 2.7 times greater in fine sediment than in coarse sediment, when normalized to mean annual temperature. In terms of carbon equivalents, shelf regions with minimal fine sediment (Georges Bank, the Grand Banks of Newfoundland-northeast Newfoundland) consumed only 5-8% of annual primary production. Benthos of the Gulf of Maine (100% fine sediment) and the Scotian Shelf (35% fine sediment) utilized 16-19% of primary production. Although 32% of the Labrador Shelf area contained fine sediments, benthic consumption of pelagic production (8%) was apparently limited by low mean annual temperature (2°C). These results indicate that incorporation of sediment-specific oxygen uptake into shelf carbon budgets may increase estimates of benthic consumption by 50%. Furthermore, respiration and production by large macrofauna allow an even greater proportion of primary production to enter benthic pathways. Fine sediment areas (shelf basins or "depocenters") are postulated to be sites of enhanced biological activity which must be considered in the modelling of shelf carbon budgets and the role of the benthos in demersal fisheries.

Response of marine biota to a period of oceanic anoxia during the Toarcian (Early Jurassic)

NASA Astrophysics Data System (ADS)

Caswell, B. A.; Coe, A. L.; Cohen, A. S.

2008-12-01

The early Toarcian Oceanic Anoxic Event (OAE; 183 Ma) was associated with a species level extinction of marine fauna and a crisis in the marine phytoplankton. The event lasted c. 250 ka and was characterised by a large, negative C-isotope excursion (CIE) of ~-7 per mil in marine organic matter, marine carbonates and fossilized wood. Geochemical evidence suggests that there was a contemporaneous increase in seawater temperature of 6-13° C that was accompanied by a large increase in the rate of global weathering. The present study documents changes in marine macrofauna in the early Toarcian at a high resolution and explores how species composition and biometric measurements are linked to geochemical changes. Reanalysis of the published palaeontological data for the Toarcian OAE suggests three apparent extinction horizons on a global and regional scale. The youngest of these horizons coincides exactly with the initial decrease in δ13C, and with the initial increases in sea surface temperature, continental weathering rates and seawater anoxia. New species range data were collected during this study from Toarcian sections in N Yorkshire, England. The results show distinct relationships with high resolution geochemical datasets (Cohen et al. 2007; Pearce et al. 2008). For example, there was an almost complete absence of fauna for 1750-12500 years immediately after each of the four abrupt shifts that make up the overall CIE. Only one bivalve species, Pseudomytiloides dubius, occurs in high abundance throughout the event, except within these discrete horizons. Increased epifaunal bivalve diversity and the reappearance of infauna indicate a brief return to relatively oxygenated conditions towards the end of the CIE. Biometric data were obtained for the two dominant bivalve species P. dubius and Bositra radiata from over 226 stratigraphic levels across the event. The data show that shell size is related to fluctuating seawater anoxia as recorded from Mo abundance and Mo-isotope data. These relationships are apparent both over the duration of the entire event and on 20 ka time-scales. Cohen, A. S. et al. 2007. J. Geol. Soc. 164 Pearce, C. R. et al. 2008. Geology 36

Sample-interpolation timing: an optimized technique for the digital measurement of time of flight for γ rays and neutrons at relatively low sampling rates

NASA Astrophysics Data System (ADS)

Aspinall, M. D.; Joyce, M. J.; Mackin, R. O.; Jarrah, Z.; Boston, A. J.; Nolan, P. J.; Peyton, A. J.; Hawkes, N. P.

2009-01-01

A unique, digital time pick-off method, known as sample-interpolation timing (SIT) is described. This method demonstrates the possibility of improved timing resolution for the digital measurement of time of flight compared with digital replica-analogue time pick-off methods for signals sampled at relatively low rates. Three analogue timing methods have been replicated in the digital domain (leading-edge, crossover and constant-fraction timing) for pulse data sampled at 8 GSa s-1. Events arising from the 7Li(p, n)7Be reaction have been detected with an EJ-301 organic liquid scintillator and recorded with a fast digital sampling oscilloscope. Sample-interpolation timing was developed solely for the digital domain and thus performs more efficiently on digital signals compared with analogue time pick-off methods replicated digitally, especially for fast signals that are sampled at rates that current affordable and portable devices can achieve. Sample interpolation can be applied to any analogue timing method replicated digitally and thus also has the potential to exploit the generic capabilities of analogue techniques with the benefits of operating in the digital domain. A threshold in sampling rate with respect to the signal pulse width is observed beyond which further improvements in timing resolution are not attained. This advance is relevant to many applications in which time-of-flight measurement is essential.

Simulated leakage of high pCO2 water negatively impacts bivalve dominated infaunal communities from the Western Baltic Sea

NASA Astrophysics Data System (ADS)

Schade, Hanna; Mevenkamp, Lisa; Guilini, Katja; Meyer, Stefanie; Gorb, Stanislav N.; Abele, Doris; Vanreusel, Ann; Melzner, Frank

2016-08-01

Carbon capture and storage is promoted as a mitigation method counteracting the increase of atmospheric CO2 levels. However, at this stage, environmental consequences of potential CO2 leakage from sub-seabed storage sites are still largely unknown. In a 3-month-long mesocosm experiment, this study assessed the impact of elevated pCO2 levels (1,500 to 24,400 μatm) on Cerastoderma edule dominated benthic communities from the Baltic Sea. Mortality of C. edule was significantly increased in the highest treatment (24,400 μatm) and exceeded 50%. Furthermore, mortality of small size classes (0-1 cm) was significantly increased in treatment levels ≥6,600 μatm. First signs of external shell dissolution became visible at ≥1,500 μatm, holes were observed at >6,600 μatm. C. edule body condition decreased significantly at all treatment levels (1,500-24,400 μatm). Dominant meiofauna taxa remained unaffected in abundance. Densities of calcifying meiofauna taxa (i.e. Gastropoda and Ostracoda) decreased in high CO2 treatments (>6,600 μatm), while the non - calcifying Gastrotricha significantly increased in abundance at 24,400 μatm. In addition, microbial community composition was altered at the highest pCO2 level. We conclude that strong CO2 leakage can alter benthic infauna community composition at multiple trophic levels, likely due to high mortality of the dominant macrofauna species C. edule.

Does Encope emarginata (Echinodermata: Echinoidea) affect spatial variation patterns of estuarine subtidal meiofauna and microphytobenthos?

NASA Astrophysics Data System (ADS)

Brustolin, Marco C.; Thomas, Micheli C.; Mafra, Luiz L.; Lana, Paulo da Cunha

2014-08-01

Foraging macrofauna, such as the sand dollar Encope emarginata, can modify sediment properties and affect spatial distribution patterns of microphytobenthos and meiobenthos at different spatial scales. We adopted a spatial hierarchical approach composed of five spatial levels (km, 100 s m, 10 s m, 1 s m and cm) to describe variation patterns of microphytobenthos, meiobenthos and sediment variables in shallow subtidal regions in the subtropical Paranaguá Bay (Southern Brazil) with live E. emarginata (LE), dead E. emarginata (only skeletons - (DE), and no E. emarginata (WE). The overall structure of microphytobenthos and meiofauna was always less variable at WE and much of variation at the scale of 100 s m was related to variability within LE and DE, due to foraging activities or to the presence of shell hashes. Likewise, increased variability in chlorophyll-a and phaeopigment contents was observed among locations within LE, although textural parameters of sediment varied mainly at smaller scales. Variations within LE were related to changes on the amount and quality of food as a function of sediment heterogeneity induced by the foraging behavior of sand dollars. We provide strong evidence that top-down effects related to the occurrence of E. emarginata act in synergy with bottom-up structuring related to hydrodynamic processes in determining overall benthic spatial variability. Conversely, species richness is mainly influenced by environmental heterogeneity at small spatial scales (centimeters to meters), which creates a mosaic of microhabitats.

Community Structure of Macrobiota and Environmental Parameters in Shallow Water Hydrothermal Vents off Kueishan Island, Taiwan

PubMed Central

Chan, Benny Kwok Kan; Wang, Teng-Wei; Chen, Pin-Chen; Lin, Chia-Wei; Chan, Tin-Yam; Tsang, Ling Ming

2016-01-01

Hydrothermal vents represent a unique habitat in the marine ecosystem characterized with high water temperature and toxic acidic chemistry. Vents are distributed at depths ranging from a few meters to several thousand meters. The biological communities of shallow-water vents have, however, been insufficiently studied in most biogeographic areas. We attempted to characterize the macrofauna and macroflora community inhabiting the shallow-water vents off Kueishan Island, Taiwan, to identify the main abiotic factors shaping the community structure and the species distribution. We determined that positively buoyant vent fluid exhibits a more pronounced negative impact to species on the surface water than on the bottom layer. Species richness increased with horizontal distance from the vent, and continuing for a distance of 2000 m, indicating that the vent fluid may exert a negative impact over several kilometers. The community structure off Kueishan Island displayed numerous transitions along the horizontal gradient, which were broadly congruent with changes in environmental conditions. Combination of variation in Ca2+, Cl-, temperature, pH and depth were revealed to show the strongest correlation with the change in benthic community structure, suggesting multiple factors of vent fluid were influencing the associated fauna. Only the vent crabs of Kueishan Island may have an obligated relationship with vents and inhabit the vent mouths because other fauna found nearby are opportunistic taxa that are more tolerant to acidic and toxic environments. PMID:26849440

A New Deep-Sea Hydrothermal Vent Species of Ostracoda (Crustacea) from the Western Pacific: Implications for Adaptation, Endemism, and Dispersal of Ostracodes in Chemosynthetic Systems.

PubMed

Tanaka, Hayato; Yasuhara, Moriaki

2016-10-01

Deep-sea hydrothermal vent fields are among the most extreme habitats on Earth. Major research interests in these ecosystems have focused on the anomalous macrofauna, which are nourished by chemoautotrophic bacterial endosymbionts. In contrast, the meiofauna is largely overlooked in this chemosynthetic environment. The present study describes a new species, Thomontocypris shimanagai sp. nov. (Crustacea: Ostracoda), which was collected from the surface of colonies of neoverrucid barnacles and paralvinellid worms on the chimneys at the Myojin-sho submarine caldera. This is the first discovery of an ostracode from deep-sea hydrothermal vent environments in the western Pacific region. In addition to the species description, we discuss three aspects: 1) adaptation, 2) endemism, and 3) dispersal strategy of the hydrothermal vent ostracodes. Regarding these aspects, we conclude the following: 1) the new species may feed on sloughed-off tissues, mucus secretions, or fecal pellets of sessile organisms, rather than depend on chemoautotrophic bacteria as symbionts for energy; 2) as has been pointed out by other studies, Thomontocypris does not likely represent a vent-specific genus; however, this new species is considered to be endemic at the species level, as it has not been found outside of the type locality; and 3) this new species may have migrated from adjacent deep-sea chemosynthesis-based habitats, such as hydrothermal vents, with wood falls potentially having acted as stepping stones.

Ammonite habitat revealed via isotopic composition and comparisons with co-occurring benthic and planktonic organisms

NASA Astrophysics Data System (ADS)

Sessa, Jocelyn Anne; Larina, Ekaterina; Knoll, Katja; Garb, Matthew; Cochran, J. Kirk; Huber, Brian T.; MacLeod, Kenneth G.; Landman, Neil H.

2015-12-01

Ammonites are among the best-known fossils of the Phanerozoic, yet their habitat is poorly understood. Three common ammonite families (Baculitidae, Scaphitidae, and Sphenodiscidae) co-occur with well-preserved planktonic and benthic organisms at the type locality of the upper Maastrichtian Owl Creek Formation, offering an excellent opportunity to constrain their depth habitats through isotopic comparisons among taxa. Based on sedimentary evidence and the micro- and macrofauna at this site, we infer that the 9-m-thick sequence was deposited at a paleodepth of 70-150 m. Taxa present throughout the sequence include a diverse assemblage of ammonites, bivalves, and gastropods, abundant benthic foraminifera, and rare planktonic foraminifera. No stratigraphic trends are observed in the isotopic data of any taxon, and thus all of the data from each taxon are considered as replicates. Oxygen isotope-based temperature estimates from the baculites and scaphites overlap with those of the benthos and are distinct from those of the plankton. In contrast, sphenodiscid temperature estimates span a range that includes estimates of the planktonic foraminifera and of the warmer half of the benthic values. These results suggest baculites and scaphites lived close to the seafloor, whereas sphenodiscids sometimes inhabited the upper water column and/or lived closer to shore. In fact, the rarity and poorer preservation of the sphenodiscids relative to the baculites and scaphites suggests that the sphenodiscid shells may have only reached the Owl Creek locality by drifting seaward after death.

Uniform functional structure across spatial scales in an intertidal benthic assemblage.

PubMed

Barnes, R S K; Hamylton, Sarah

2015-05-01

To investigate the causes of the remarkable similarity of emergent assemblage properties that has been demonstrated across disparate intertidal seagrass sites and assemblages, this study examined whether their emergent functional-group metrics are scale related by testing the null hypothesis that functional diversity and the suite of dominant functional groups in seagrass-associated macrofauna are robust structural features of such assemblages and do not vary spatially across nested scales within a 0.4 ha area. This was carried out via a lattice of 64 spatially referenced stations. Although densities of individual components were patchily dispersed across the locality, rank orders of importance of the 14 functional groups present, their overall functional diversity and evenness, and the proportions of the total individuals contained within each showed, in contrast, statistically significant spatial uniformity, even at areal scales <2 m(2). Analysis of the proportional importance of the functional groups in their geospatial context also revealed weaker than expected levels of spatial autocorrelation, and then only at the smaller scales and amongst the most dominant groups, and only a small number of negative correlations occurred between the proportional importances of the individual groups. In effect, such patterning was a surface veneer overlying remarkable stability of assemblage functional composition across all spatial scales. Although assemblage species composition is known to be homogeneous in some soft-sediment marine systems over equivalent scales, this combination of patchy individual components yet basically constant functional-group structure seems as yet unreported. Copyright © 2015 Elsevier Ltd. All rights reserved.

Microbes are trophic analogs of animals

PubMed Central

Steffan, Shawn A.; Chikaraishi, Yoshito; Currie, Cameron R.; Horn, Heidi; Gaines-Day, Hannah R.; Pauli, Jonathan N.; Zalapa, Juan E.; Ohkouchi, Naohiko

2015-01-01

In most ecosystems, microbes are the dominant consumers, commandeering much of the heterotrophic biomass circulating through food webs. Characterizing functional diversity within the microbiome, therefore, is critical to understanding ecosystem functioning, particularly in an era of global biodiversity loss. Using isotopic fingerprinting, we investigated the trophic positions of a broad diversity of heterotrophic organisms. Specifically, we examined the naturally occurring stable isotopes of nitrogen (15N:14N) within amino acids extracted from proteobacteria, actinomycetes, ascomycetes, and basidiomycetes, as well as from vertebrate and invertebrate macrofauna (crustaceans, fish, insects, and mammals). Here, we report that patterns of intertrophic 15N-discrimination were remarkably similar among bacteria, fungi, and animals, which permitted unambiguous measurement of consumer trophic position, independent of phylogeny or ecosystem type. The observed similarities among bacterial, fungal, and animal consumers suggest that within a trophic hierarchy, microbiota are equivalent to, and can be interdigitated with, macrobiota. To further test the universality of this finding, we examined Neotropical fungus gardens, communities in which bacteria, fungi, and animals are entwined in an ancient, quadripartite symbiosis. We reveal that this symbiosis is a discrete four-level food chain, wherein bacteria function as the apex carnivores, animals and fungi are meso-consumers, and the sole herbivores are fungi. Together, our findings demonstrate that bacteria, fungi, and animals can be integrated within a food chain, effectively uniting the macro- and microbiome in food web ecology and facilitating greater inclusion of the microbiome in studies of functional diversity. PMID:26598691

Simulated leakage of high pCO2 water negatively impacts bivalve dominated infaunal communities from the Western Baltic Sea.

PubMed

Schade, Hanna; Mevenkamp, Lisa; Guilini, Katja; Meyer, Stefanie; Gorb, Stanislav N; Abele, Doris; Vanreusel, Ann; Melzner, Frank

2016-08-19

Carbon capture and storage is promoted as a mitigation method counteracting the increase of atmospheric CO2 levels. However, at this stage, environmental consequences of potential CO2 leakage from sub-seabed storage sites are still largely unknown. In a 3-month-long mesocosm experiment, this study assessed the impact of elevated pCO2 levels (1,500 to 24,400 μatm) on Cerastoderma edule dominated benthic communities from the Baltic Sea. Mortality of C. edule was significantly increased in the highest treatment (24,400 μatm) and exceeded 50%. Furthermore, mortality of small size classes (0-1 cm) was significantly increased in treatment levels ≥6,600 μatm. First signs of external shell dissolution became visible at ≥1,500 μatm, holes were observed at >6,600 μatm. C. edule body condition decreased significantly at all treatment levels (1,500-24,400 μatm). Dominant meiofauna taxa remained unaffected in abundance. Densities of calcifying meiofauna taxa (i.e. Gastropoda and Ostracoda) decreased in high CO2 treatments (>6,600 μatm), while the non - calcifying Gastrotricha significantly increased in abundance at 24,400 μatm. In addition, microbial community composition was altered at the highest pCO2 level. We conclude that strong CO2 leakage can alter benthic infauna community composition at multiple trophic levels, likely due to high mortality of the dominant macrofauna species C. edule.

Differences in meiofauna communities with sediment depth are greater than habitat effects on the New Zealand continental margin: implications for vulnerability to anthropogenic disturbance

PubMed Central

Leduc, Daniel; Rowden, Ashley A.; Clark, Malcolm R.; Probert, P. Keith; Berkenbusch, Katrin; Neira, Carlos

2016-01-01

Studies of deep-sea benthic communities have largely focused on particular (macro) habitats in isolation, with few studies considering multiple habitats simultaneously in a comparable manner. Compared to mega-epifauna and macrofauna, much less is known about habitat-related variation in meiofaunal community attributes (abundance, diversity and community structure). Here, we investigated meiofaunal community attributes in slope, canyon, seamount, and seep habitats in two regions on the continental slope of New Zealand (Hikurangi Margin and Bay of Plenty) at four water depths (700, 1,000, 1,200 and 1,500 m). We found that patterns were not the same for each community attribute. Significant differences in abundance were consistent across regions, habitats, water and sediment depths, while diversity and community structure only differed between sediment depths. Abundance was higher in canyon and seep habitats compared with other habitats, while between sediment layer, abundance and diversity were higher at the sediment surface. Our findings suggest that meiofaunal community attributes are affected by environmental factors that operate on micro- (cm) to meso- (0.1–10 km), and regional scales (> 100 km). We also found a weak, but significant, correlation between trawling intensity and surface sediment diversity. Overall, our results indicate that variability in meiofaunal communities was greater at small scale than at habitat or regional scale. These findings provide new insights into the factors controlling meiofauna in these deep-sea habitats and their potential vulnerability to anthropogenic activities. PMID:27441114

Decomposition of jellyfish carrion in situ: Short-term impacts on infauna, benthic nutrient fluxes and sediment redox conditions.

PubMed

Chelsky, Ariella; Pitt, Kylie A; Ferguson, Angus J P; Bennett, William W; Teasdale, Peter R; Welsh, David T

2016-10-01

Jellyfish often form blooms that persist for weeks to months before they collapse en masse, resulting in the sudden release of large amounts of organic matter to the environment. This study investigated the biogeochemical and ecological effects of the decomposition of jellyfish in a shallow coastal lagoon in New South Wales, Australia. Catostylus mosaicus carrion was added to the surface of shallow sub-tidal sediments and biogeochemical parameters and macrofaunal abundance immediately below the jellyfish carrion were measured over three days. Sediment plots without jellyfish served as controls. Sediment oxygen demand and carbon and nitrogen efflux increased by up to 60-fold in the jellyfish plots, compared to control plots, and dissolved organic nutrient fluxes were more sustained than in previous studies due to the use of fresh rather than frozen biomass. The decomposing jellyfish progressively altered sediment redox conditions, indicated by an increase in porewater iron (II) and sulfide concentrations measured by high-resolution in situ diffusive samplers. Abundance of some macrofaunal taxa in the jellyfish plots decreased relative to controls, however, the abundance of a carnivorous gastropod, which was presumably feeding on the carrion, increased in the jellyfish plots. While jellyfish carrion may be a food source for some macrofauna, low oxygen conditions coupled with the accumulation of toxic dissolved sulfides in the near-surface sediments may explain the overall change in the macroinfaunal community. Copyright © 2016 Elsevier B.V. All rights reserved.

Time-of-flight radio location system

DOEpatents

McEwan, T.E.

1997-08-26

A bi-static radar configuration measures the direct time-of-flight of a transmitted RF pulse and is capable of measuring this time-of-flight with a jitter on the order of about one pico-second, or about 0.01 inch of free space distance for an electromagnetic pulse over a range of about one to ten feet. A transmitter transmits a sequence of electromagnetic pulses in response to a transmit timing signal, and a receiver samples the sequence of electromagnetic pulses with controlled timing in response to a receive timing signal, and generates a sample signal in response to the samples. A timing circuit supplies the transmit timing signal to the transmitter and supplies the receive timing signal to the receiver. The receive timing signal causes the receiver to sample the sequence of electromagnetic pulses such that the time between transmission of pulses in the sequence and sampling by the receiver sweeps over a range of delays. The receive timing signal sweeps over the range of delays in a sweep cycle such that pulses in the sequence are sampled at the pulse repetition rate, and with different delays in the range of delays to produce a sample signal representing magnitude of a received pulse in equivalent time. Automatic gain control circuitry in the receiver controls the magnitude of the equivalent time sample signal. A signal processor analyzes the sample signal to indicate the time-of-flight of the electromagnetic pulses in the sequence. The sample signal in equivalent time is passed through an envelope detection circuit, formed of an absolute value circuit followed by a low pass filter, to convert the sample signal to a unipolar signal to eliminate effects of antenna misorientation. 8 figs.

Time-of-flight radio location system

DOEpatents

McEwan, Thomas E.

1997-01-01

A bi-static radar configuration measures the direct time-of-flight of a transmitted RF pulse and is capable of measuring this time-of-flight with a jitter on the order of about one pico-second, or about 0.01 inch of free space distance for an electromagnetic pulse over a range of about one to ten feet. A transmitter transmits a sequence of electromagnetic pulses in response to a transmit timing signal, and a receiver samples the sequence of electromagnetic pulses with controlled timing in response to a receive timing signal, and generates a sample signal in response to the samples. A timing circuit supplies the transmit timing signal to the transmitter and supplies the receive timing signal to the receiver. The receive timing signal causes the receiver to sample the sequence of electromagnetic pulses such that the time between transmission of pulses in the sequence and sampling by the receiver sweeps over a range of delays. The receive timing signal sweeps over the range of delays in a sweep cycle such that pulses in the sequence are sampled at the pulse repetition rate, and with different delays in the range of delays to produce a sample signal representing magnitude of a received pulse in equivalent time. Automatic gain control circuitry in the receiver controls the magnitude of the equivalent time sample signal. A signal processor analyzes the sample signal to indicate the time-of-flight of the electromagnetic pulses in the sequence. The sample signal in equivalent time is passed through an envelope detection circuit, formed of an absolute value circuit followed by a low pass filter, to convert the sample signal to a unipolar signal to eliminate effects of antenna misorientation.

Unmixing the young fossil record using radiocarbon-calibrated amino-acid racemization (Gulf of Trieste, northern Adriatic Sea)

NASA Astrophysics Data System (ADS)

Tomašových, Adam; Gallmetzer, Ivo; Haselmair, Alex; Kaufman, Darrell S.; Vidović, Jelena; Zuschin, Martin

2017-04-01

Marine coastal habitats globally have been affected by eutrophication, hypoxia, habitat alteration, overfishing, and resource exploitation over recent decades. However, reconstruction of past natural ecosystem states is compromised by short-term archives and biotic surveys limited to the past decades and/or by low stratigraphic resolution of fossil assemblages in sedimentary cores due to slow sedimentation and bioturbation. In the northern Adriatic Sea, which was affected by eutrophication, algal blooms and mucilage blooms, and hypoxia during the second half of the 20th century, the composition of natural baseline states of benthic ecosystems and their responses to natural and anthropogenic disturbances over longer, centennial scales are poorly known. In this study, we evaluate the timing and forcing of past hypoxia events in the northern Adriatic Sea (Gulf of Trieste) based on the production history of the opportunistic, hypoxia-tolerant bivalve Corbula gibba, using 210Pb data, radiocarbon dating, amino acid racemization, and distribution of foraminifers in 1.5-m-thick sediment cores that capture the past 500 yr. Corbula gibba tolerates eutrophied and polluted conditions and survives seasonal hypoxic and mass mortality events affecting most of the benthic macrofauna in the northern Adriatic Sea. In the aftermath of such events, it can achieve density of thousands of individuals/1 m2 and can contribute with more than 80% of individuals to the bivalve assemblage. Unmixing the stratigraphic record of cores on the basis of 311 shells of C. gibba, we show that production of this species underwent major decadal-scale fluctuations since the 18th century, with outbreaks corresponding to density of more than 1000 individuals per square meter. A positive correlation between abundances of hypoxia-tolerant foraminifers and C. gibba, the temporal coincidence between the peak in abundance at 1980 and several hypoxic crises in the Gulf of Trieste in 1974, 1980, and 1983, and the temporal coincidence between the decline in C. gibba abundance and low frequency of hypoxia in the past two decades, suggest that outbreaks of C. gibba do correspond to past hypoxia events. We suggest that the outbreaks of C. gibba represent long-term phenomena in the northern Adriatic ecosystem rather than novel states characteristic of the 20th century eutrophication. These outbreaks correlate significantly positively with maxima in sea-surface temperature, indicating that the hypoxia events were connected with water-column stratification rather than with eutrophication events. The reconstructed fluctuations in production do not correlate with abundances of C. gibba in the raw stratigraphic record due to centennial-scale time averaging of bivalve assemblages.

Defining winter trophic habitat of juvenile Gulf Sturgeon in the Suwannee and Apalachicola rivermouth estuaries, acoustic telemetry investigations

USGS Publications Warehouse

Sulak, K.J.; Randall, M.T.; Edwards, R.E.; Summers, T.M.; Luke, K.E.; Smith, W.T.; Norem, A.D.; Harden, William M.; Lukens, R.H.; Parauka, F.; Bolden, S.; Lehnert, R.

2009-01-01

Three automated listening post-telemetry studies were undertaken in the Suwannee and Apalachicola estuaries to gain knowledge of habitats use by juvenile Gulf Sturgeons (Acipenser oxyrinchus desotoi) on winter feeding grounds. A simple and reliable method for external attachment of small acoustic tags to the dorsal fin base was developed using shrink-tubing. Suspending receivers on masts below anchored buoys improved reception and facilitated downloading; a detection range of 500–2500 m was realized. In the Apalachicola estuary, juvenile GS stayed in shallow water (< 2 m) within the estuarine transition zone all winter in the vicinity of the Apalachicola River mouth. Juvenile GS high-use areas did not coincide with high density benthic macrofauna areas from the most recent (1999) benthos survey. In the Suwannee estuary, juveniles ranged widely and individually throughout oligohaline to mesohaline subareas of the estuary, preferentially using mesohaline subareas seaward of Suwannee Reef (52% of acoustic detections). The river mouth subarea was important only in early and late winter, during the times of adult Gulf Sturgeon migrations (41% of detections). Preferred winter feeding subareas coincided spatially with known areas of dense macrofaunal benthos concentrations. Following a dramatic drop in air and water temperatures, juvenile GS left the river mouth and estuary, subsequently being detected 8 km offshore in polyhaline open Gulf of Mexico waters, before returning to the estuary. Cold-event offshore excursions demonstrate that they can tolerate full-salinity polyhaline waters in the open Gulf of Mexico, for at least several days at a time. For juvenile sturgeons, the stress and metabolic cost of enduring high salinity (Jarvis et al., 2001; McKenzie et al., 2001; Singer and Ballantyne, 2002) for short periods in deep offshore waters seems adaptively advantageous relative to the risk of cold-event mortality in shallow inshore waters of lower salinity. Thus, while juveniles can tolerate high salinities for days to weeks to escape cold events, they appear to make only infrequent use of open polyhaline waters. Throughout the winter foraging period, juvenile GS stayed primarily within the core area of Suwannee River mouth influence, extending about 12 km north and south of the river mouth, and somewhat seaward of Suwannee Reef (< 5 km offshore). None were detected departing the core area past either of the northern or southern acoustic gates, located 66 and 52 km distant from the river mouth, respectively.

Time-of-flight radio location system

DOEpatents

McEwan, T.E.

1996-04-23

A bi-static radar configuration measures the direct time-of-flight of a transmitted RF pulse and is capable of measuring this time-of-flight with a jitter on the order of about one pico-second, or about 0.01 inch of free space distance for an electromagnetic pulse over a range of about one to ten feet. A transmitter transmits a sequence of electromagnetic pulses in response to a transmit timing signal, and a receiver samples the sequence of electromagnetic pulses with controlled timing in response to a receive timing signal, and generates a sample signal in response to the samples. A timing circuit supplies the transmit timing signal to the transmitter and supplies the receive timing signal to the receiver. The receive timing signal causes the receiver to sample the sequence of electromagnetic pulses such that the time between transmission of pulses in the sequence and sampling by the receiver sweeps over a range of delays. The receive timing signal sweeps over the range of delays in a sweep cycle such that pulses in the sequence are sampled at the pulse repetition rate, and with different delays in the range of delays to produce a sample signal representing magnitude of a received pulse in equivalent time. Automatic gain control circuitry in the receiver controls the magnitude of the equivalent time sample signal. A signal processor analyzes the sample signal to indicate the time-of-flight of the electromagnetic pulses in the sequence. 7 figs.

Time-of-flight radio location system

DOEpatents

McEwan, Thomas E.

1996-01-01

A bi-static radar configuration measures the direct time-of-flight of a transmitted RF pulse and is capable of measuring this time-of-flight with a jitter on the order of about one pico-second, or about 0.01 inch of free space distance for an electromagnetic pulse over a range of about one to ten feet. A transmitter transmits a sequence of electromagnetic pulses in response to a transmit timing signal, and a receiver samples the sequence of electromagnetic pulses with controlled timing in response to a receive timing signal, and generates a sample signal in response to the samples. A timing circuit supplies the transmit timing signal to the transmitter and supplies the receive timing signal to the receiver. The receive timing signal causes the receiver to sample the sequence of electromagnetic pulses such that the time between transmission of pulses in the sequence and sampling by the receiver sweeps over a range of delays. The receive timing signal sweeps over the range of delays in a sweep cycle such that pulses in the sequence are sampled at the pulse repetition rate, and with different delays in the range of delays to produce a sample signal representing magnitude of a received pulse in equivalent time. Automatic gain control circuitry in the receiver controls the magnitude of the equivalent time sample signal. A signal processor analyzes the sample signal to indicate the time-of-flight of the electromagnetic pulses in the sequence.

Using forbidden ordinal patterns to detect determinism in irregularly sampled time series.

PubMed

Kulp, C W; Chobot, J M; Niskala, B J; Needhammer, C J

2016-02-01

It is known that when symbolizing a time series into ordinal patterns using the Bandt-Pompe (BP) methodology, there will be ordinal patterns called forbidden patterns that do not occur in a deterministic series. The existence of forbidden patterns can be used to identify deterministic dynamics. In this paper, the ability to use forbidden patterns to detect determinism in irregularly sampled time series is tested on data generated from a continuous model system. The study is done in three parts. First, the effects of sampling time on the number of forbidden patterns are studied on regularly sampled time series. The next two parts focus on two types of irregular-sampling, missing data and timing jitter. It is shown that forbidden patterns can be used to detect determinism in irregularly sampled time series for low degrees of sampling irregularity (as defined in the paper). In addition, comments are made about the appropriateness of using the BP methodology to symbolize irregularly sampled time series.

Representativeness of direct observations selected using a work-sampling equation.

PubMed

Sharp, Rebecca A; Mudford, Oliver C; Elliffe, Douglas

2015-01-01

Deciding on appropriate sampling to obtain representative samples of behavior is important but not straightforward, because the relative duration of the target behavior may affect its observation in a given sampling interval. Work-sampling methods, which offer a way to adjust the frequency of sampling according to a priori or ongoing estimates of the behavior to achieve a preselected level of representativeness, may provide a solution. Full-week observations of 7 behaviors were conducted for 3 students with autism spectrum disorder and intellectual disabilities. Work-sampling methods were used to select momentary time samples from the full time-of-interest, which produced representative samples. However, work sampling required impractically high numbers of time samples to obtain representative samples. More practical momentary time samples produced less representative samples, particularly for low-duration behaviors. The utility and limits of work-sampling methods for applied behavior analysis are discussed. © Society for the Experimental Analysis of Behavior.

A general method to determine sampling windows for nonlinear mixed effects models with an application to population pharmacokinetic studies.

PubMed

Foo, Lee Kien; McGree, James; Duffull, Stephen

2012-01-01

Optimal design methods have been proposed to determine the best sampling times when sparse blood sampling is required in clinical pharmacokinetic studies. However, the optimal blood sampling time points may not be feasible in clinical practice. Sampling windows, a time interval for blood sample collection, have been proposed to provide flexibility in blood sampling times while preserving efficient parameter estimation. Because of the complexity of the population pharmacokinetic models, which are generally nonlinear mixed effects models, there is no analytical solution available to determine sampling windows. We propose a method for determination of sampling windows based on MCMC sampling techniques. The proposed method attains a stationary distribution rapidly and provides time-sensitive windows around the optimal design points. The proposed method is applicable to determine sampling windows for any nonlinear mixed effects model although our work focuses on an application to population pharmacokinetic models. Copyright © 2012 John Wiley & Sons, Ltd.

Time-dependent importance sampling in semiclassical initial value representation calculations for time correlation functions.

PubMed

Tao, Guohua; Miller, William H

2011-07-14

An efficient time-dependent importance sampling method is developed for the Monte Carlo calculation of time correlation functions via the initial value representation (IVR) of semiclassical (SC) theory. A prefactor-free time-dependent sampling function weights the importance of a trajectory based on the magnitude of its contribution to the time correlation function, and global trial moves are used to facilitate the efficient sampling the phase space of initial conditions. The method can be generally applied to sampling rare events efficiently while avoiding being trapped in a local region of the phase space. Results presented in the paper for two system-bath models demonstrate the efficiency of this new importance sampling method for full SC-IVR calculations.

Variance of discharge estimates sampled using acoustic Doppler current profilers from moving boats

USGS Publications Warehouse

Garcia, Carlos M.; Tarrab, Leticia; Oberg, Kevin; Szupiany, Ricardo; Cantero, Mariano I.

2012-01-01

This paper presents a model for quantifying the random errors (i.e., variance) of acoustic Doppler current profiler (ADCP) discharge measurements from moving boats for different sampling times. The model focuses on the random processes in the sampled flow field and has been developed using statistical methods currently available for uncertainty analysis of velocity time series. Analysis of field data collected using ADCP from moving boats from three natural rivers of varying sizes and flow conditions shows that, even though the estimate of the integral time scale of the actual turbulent flow field is larger than the sampling interval, the integral time scale of the sampled flow field is on the order of the sampling interval. Thus, an equation for computing the variance error in discharge measurements associated with different sampling times, assuming uncorrelated flow fields is appropriate. The approach is used to help define optimal sampling strategies by choosing the exposure time required for ADCPs to accurately measure flow discharge.

The role of dispersal mode and habitat specialization for metacommunity structure of shallow beach invertebrates.

PubMed

Rodil, Iván F; Lucena-Moya, Paloma; Jokinen, Henri; Ollus, Victoria; Wennhage, Håkan; Villnäs, Anna; Norkko, Alf

2017-01-01

Metacommunity ecology recognizes the interplay between local and regional patterns in contributing to spatial variation in community structure. In aquatic systems, the relative importance of such patterns depends mainly on the potential connectivity of the specific system. Thus, connectivity is expected to increase in relation to the degree of water movement, and to depend on the specific traits of the study organism. We examined the role of environmental and spatial factors in structuring benthic communities from a highly connected shallow beach network using a metacommunity approach. Both factors contributed to a varying degree to the structure of the local communities suggesting that environmental filters and dispersal-related mechanisms played key roles in determining abundance patterns. We categorized benthic taxa according to their dispersal mode (passive vs. active) and habitat specialization (generalist vs. specialist) to understand the relative importance of environment and dispersal related processes for shallow beach metacommunities. Passive dispersers were predicted by a combination of environmental and spatial factors, whereas active dispersers were not spatially structured and responded only to local environmental factors. Generalists were predicted primarily by spatial factors, while specialists were only predicted by local environmental factors. The results suggest that the role of the spatial component in metacommunity organization is greater in open coastal waters, such as shallow beaches, compared to less-connected environmentally controlled aquatic systems. Our results also reveal a strong environmental role in structuring the benthic metacommunity of shallow beaches. Specifically, we highlight the sensitivity of shallow beach macrofauna to environmental factors related to eutrophication proxies.

Vertical Variability of Anoxia Along the Northern Omani Shelf.

NASA Astrophysics Data System (ADS)

Queste, B. Y.; Piontkovski, S.; Heywood, K. J.

2016-02-01

Three autonomous underwater gliders were deployed along a 80 km transect extending from Muscat out into the Gulf during both monsoons and the intermonsoon season as part of a project funded by ONR Global and the UK NERC. The gliders surveyed the top 1000m across the continental shelf, the steep continental slope, and the Sea of Oman while measuring temperature, salinity, oxygen, chlorophyll a fluorescence, optical backscatter, photosyntheticall active radiation and providing estimates of depth-averaged currents and up/downwelling. The data show the depth of the surface oxycline varying by 50m across the transect as a function of mixed layer depth. Below, we observed high variability, on the order of days, in the oxygen profile with the boundary of the suboxic zone (< 6 µmol.kg-1) varying by up to 250m. This upper boundary was determined by the volume of the Persian Gulf Water (PGW) outflow which travels along the shelf edge. Below 400m, oxygen concentrations reached levels below 1 µmol.kg-1. The physical drivers of PGW transport therefore double, or reduce by half, the available habitat for macrofauna. The across-shelf transect allowed estimation of along-slope transport and variability of the PGW, identified by its higher salinity, temperature, optical backscatter and oxygen content. The structure and volume of the outflow was highly variable. During peak outflow, the core extended beyond the glider transect. During periods of minimal flow, it was constrained to 10km beyond the shelf break. PGW was also present in mesoscale eddies beyond the shelf break.

Soil food web changes during spontaneous succession at post mining sites: a possible ecosystem engineering effect on food web organization?

PubMed

Frouz, Jan; Thébault, Elisa; Pižl, Václav; Adl, Sina; Cajthaml, Tomáš; Baldrián, Petr; Háněl, Ladislav; Starý, Josef; Tajovský, Karel; Materna, Jan; Nováková, Alena; de Ruiter, Peter C

2013-01-01

Parameters characterizing the structure of the decomposer food web, biomass of the soil microflora (bacteria and fungi) and soil micro-, meso- and macrofauna were studied at 14 non-reclaimed 1- 41-year-old post-mining sites near the town of Sokolov (Czech Republic). These observations on the decomposer food webs were compared with knowledge of vegetation and soil microstructure development from previous studies. The amount of carbon entering the food web increased with succession age in a similar way as the total amount of C in food web biomass and the number of functional groups in the food web. Connectance did not show any significant changes with succession age, however. In early stages of the succession, the bacterial channel dominated the food web. Later on, in shrub-dominated stands, the fungal channel took over. Even later, in the forest stage, the bacterial channel prevailed again. The best predictor of fungal bacterial ratio is thickness of fermentation layer. We argue that these changes correspond with changes in topsoil microstructure driven by a combination of plant organic matter input and engineering effects of earthworms. In early stages, soil is alkaline, and a discontinuous litter layer on the soil surface promotes bacterial biomass growth, so the bacterial food web channel can dominate. Litter accumulation on the soil surface supports the development of the fungal channel. In older stages, earthworms arrive, mix litter into the mineral soil and form an organo-mineral topsoil, which is beneficial for bacteria and enhances the bacterial food web channel.

Soil Food Web Changes during Spontaneous Succession at Post Mining Sites: A Possible Ecosystem Engineering Effect on Food Web Organization?

PubMed Central

Frouz, Jan; Thébault, Elisa; Pižl, Václav; Adl, Sina; Cajthaml, Tomáš; Baldrián, Petr; Háněl, Ladislav; Starý, Josef; Tajovský, Karel; Materna, Jan; Nováková, Alena; de Ruiter, Peter C.

2013-01-01

Parameters characterizing the structure of the decomposer food web, biomass of the soil microflora (bacteria and fungi) and soil micro-, meso- and macrofauna were studied at 14 non-reclaimed 1– 41-year-old post-mining sites near the town of Sokolov (Czech Republic). These observations on the decomposer food webs were compared with knowledge of vegetation and soil microstructure development from previous studies. The amount of carbon entering the food web increased with succession age in a similar way as the total amount of C in food web biomass and the number of functional groups in the food web. Connectance did not show any significant changes with succession age, however. In early stages of the succession, the bacterial channel dominated the food web. Later on, in shrub-dominated stands, the fungal channel took over. Even later, in the forest stage, the bacterial channel prevailed again. The best predictor of fungal bacterial ratio is thickness of fermentation layer. We argue that these changes correspond with changes in topsoil microstructure driven by a combination of plant organic matter input and engineering effects of earthworms. In early stages, soil is alkaline, and a discontinuous litter layer on the soil surface promotes bacterial biomass growth, so the bacterial food web channel can dominate. Litter accumulation on the soil surface supports the development of the fungal channel. In older stages, earthworms arrive, mix litter into the mineral soil and form an organo-mineral topsoil, which is beneficial for bacteria and enhances the bacterial food web channel. PMID:24260281

Behaviour of mobile macrofauna is a key factor in beach ecology as response to rapid environmental changes

NASA Astrophysics Data System (ADS)

Scapini, Felicita

2014-10-01

Sandy beach animals show behavioural adaptations that are expressed as contingencies during the life history of individuals to face periodic and episodic environmental changes. Such adaptations include activity rhythms, orientation, zonation, burrowing, escape responses and feeding strategies, the first two being common adaptations to all mobile animals. The complex conditions of a particular beach environment may be integrated in a learning process enhancing the adaptation and survival of individuals and eventually of populations. Evidence exists of genetic determination of some behavioural features that are adaptive in the long term (throughout generations) by increasing individual survival and reproductive potential. The environmental features integrated with the life history of beach animals shape the individual behaviour through ontogenetic processes, as well as population behaviour through evolutionary processes. Thus, behavioural differences among individuals may reflect environmental variation at the local and small/medium temporal scales of beach processes, whereas within-population behavioural coherence and differences among populations may reflect variation at the geographic scale. The different foci stressed by different authors and the variety of evidence dependent upon local geographical and ecological conditions have often resulted in compartmentalised explanations, making generalizations and the repeatability of behavioural studies of beach ecology challenging. There was a need to developing a more synthetic paradigm for beach animal behaviour. This paper gives a brief overview of the theoretical background and keystone studies, which have contributed to our understanding of animal behaviour in sandy beach ecology, and proposes testable hypotheses to be integrated in the beach ecology paradigm.

Methanogenic calcite, 13C-depleted bivalve shells, and gas hydrate from a mud volcano offshore southern California

USGS Publications Warehouse

Hein, J.R.; Normark, W.R.; McIntyre, B.R.; Lorenson, T.D.; Powell, C.L.

2006-01-01

Methane and hydrogen sulfide vent from a cold seep above a shallowly buried methane hydrate in a mud volcano located 24 km offshore southern California in?? 800 m of water. Bivalves, authigenic calcite, and methane hydrate were recovered in a 2.1 m piston core. Aragonite shells of two bivalve species are unusually depleted in 13C (to -91??? ??13C), the most 13C-depleted shells of marine macrofauna yet discovered. Carbon isotopes for both living and dead specimens indicate that they used, in part, carbon derived from anaerobically oxidized methane to construct their shells. The ??13C values are highly variable, but most are within the range -12??? to -91???. This variability may be diagnostic for identifying cold-seep-hydrate systems in the geologic record. Authigenic calcite is abundant in the cores down to ???1.5 m subbottom, the top of the methane hydrate. The calcite is depleted in 13C (??13C = -46??? to -58???), indicating that carbon produced by anaerobically oxidized methane is the main source of the calcite. Methane sources include a geologic hydrocarbon reservoir from Miocene source rocks, and biogenic and thermogenic degradation of organic matter in basin sediments. Oxygen isotopes indicate that most calcite formed out of isotopic equilibrium with ambient bottom water, under the influence of gas hydrate dissociation and strong methane flux. High metal content in the mud volcano sediment indicates leaching of basement rocks by fluid circulating along an underlying fault, which also allows for a high flux of fossil methane. ?? 2006 Geological Society of America.

Biochar-macrofauna interplay: Searching for new bioindicators.

PubMed

Castracani, C; Maienza, A; Grasso, D A; Genesio, L; Malcevschi, A; Miglietta, F; Vaccari, F P; Mori, A

2015-12-01

Biochar incorporation in agricultural soils has been proposed as a climate change mitigation strategy and has proved to substantially increase crop productivity via physical, chemical and biological mechanisms. The changes induced in soil properties are known to have a direct impact on soil ecosystem with consequences for soil biota community that, in turn, can influence biochar aging in soil. Despite several studies investigated in the interplay between biochar and soil microbiology, there is a clear lack of information on groups that live in the most superficial ground layers: soil meso and macro fauna. These groups are of great importance if we consider that biochar application should ideally be located in the soil's surface layer (0-30 cm). Our study is the first attempt to investigate the interactions between biochar soil amendments and aboveground soil macro-meso fauna in a field crop. This was made setting-up a randomized-block experiment on a processing tomato crop in northern Italy, using three different biochar types and periodically monitoring soil parameters and fauna abundances along the crop growing cycle in summer 2013. Results show that the impact of biochar application on soil fauna as a whole is small when compared to that of agricultural management, suggesting that this amendment does not have short-term ecological interferences. Nevertheless, ants exhibited variations in abundances and distribution connected to properties of amended soils such as temperature, pH and humidity, proving that they can be effectively used as a target group in the study of interactions between biochar and soil biota. Copyright © 2015 Elsevier B.V. All rights reserved.

The role of dispersal mode and habitat specialization for metacommunity structure of shallow beach invertebrates

PubMed Central

Lucena-Moya, Paloma; Jokinen, Henri; Ollus, Victoria; Wennhage, Håkan; Villnäs, Anna; Norkko, Alf

2017-01-01

Metacommunity ecology recognizes the interplay between local and regional patterns in contributing to spatial variation in community structure. In aquatic systems, the relative importance of such patterns depends mainly on the potential connectivity of the specific system. Thus, connectivity is expected to increase in relation to the degree of water movement, and to depend on the specific traits of the study organism. We examined the role of environmental and spatial factors in structuring benthic communities from a highly connected shallow beach network using a metacommunity approach. Both factors contributed to a varying degree to the structure of the local communities suggesting that environmental filters and dispersal-related mechanisms played key roles in determining abundance patterns. We categorized benthic taxa according to their dispersal mode (passive vs. active) and habitat specialization (generalist vs. specialist) to understand the relative importance of environment and dispersal related processes for shallow beach metacommunities. Passive dispersers were predicted by a combination of environmental and spatial factors, whereas active dispersers were not spatially structured and responded only to local environmental factors. Generalists were predicted primarily by spatial factors, while specialists were only predicted by local environmental factors. The results suggest that the role of the spatial component in metacommunity organization is greater in open coastal waters, such as shallow beaches, compared to less-connected environmentally controlled aquatic systems. Our results also reveal a strong environmental role in structuring the benthic metacommunity of shallow beaches. Specifically, we highlight the sensitivity of shallow beach macrofauna to environmental factors related to eutrophication proxies. PMID:28196112

Breaking ground: Pedological, geological, and ecological implications of soil bioturbation

NASA Astrophysics Data System (ADS)

Wilkinson, Marshall T.; Richards, Paul J.; Humphreys, Geoff S.

Soil and its biota are fundamental components of the "Critical Zone": Earth's living skin that most directly sustains life. Within that zone, geologically-rapid soil and saprolite displacement by biota, particularly invertebrate meso- and macrofauna, affects a large proportion of Earth's soils. This was first recognised by late-19th century observers, on both sides of the Atlantic Ocean, who regarded bioturbation as fundamental to soil formation. Throughout much of the 20th century, however, the agronomical focus of soil scientists and the dominant paradigm of landscape evolution relegated bioturbation. As a result, many aspects of bioturbation are still not widely appreciated. Only in the last few decades has a re-evaluation commenced, in a range of disciplines. Primary effects of bioturbation, which we quantify herein, include soil production from saprolite, the formation of surface mounds, soil burial, and downslope transport. Rates of bioturbation can be as rapid as sustained maximum rates of tectonic uplift. In concert with surface geomorphic processes, bioturbation alters fundamental properties of soil, including particle-size distribution, porosity, the content of carbon and other nutrients, and creep flux rate. The precise influence of biotic mixing is regulated by its depth function. Earth's incredibly diverse soil biota also perform a number of functions, at a range of spatial and temporal scales, that extend beyond soil to landscape evolution, ecosystem engineering, niche construction, and carbon cycling. Understanding these linkages—which have operated since the evolution of trees in the Devonian Period—is of growing importance as we seek a fuller picture of Earth's history to predict and manage its future.

Do soil organisms affect aboveground litter decomposition in the semiarid Patagonian steppe, Argentina?

PubMed

Araujo, Patricia I; Yahdjian, Laura; Austin, Amy T

2012-01-01

Surface litter decomposition in arid and semiarid ecosystems is often faster than predicted by climatic parameters such as annual precipitation or evapotranspiration, or based on standard indices of litter quality such as lignin or nitrogen concentrations. Abiotic photodegradation has been demonstrated to be an important factor controlling aboveground litter decomposition in aridland ecosystems, but soil fauna, particularly macrofauna such as termites and ants, have also been identified as key players affecting litter mass loss in warm deserts. Our objective was to quantify the importance of soil organisms on surface litter decomposition in the Patagonian steppe in the absence of photodegradative effects, to establish the relative importance of soil organisms on rates of mass loss and nitrogen release. We estimated the relative contribution of soil fauna and microbes to litter decomposition of a dominant grass using litterboxes with variable mesh sizes that excluded groups of soil fauna based on size class (10, 2, and 0.01 mm), which were placed beneath shrub canopies. We also employed chemical repellents (naphthalene and fungicide). The exclusion of macro- and mesofauna had no effect on litter mass loss over 3 years (P = 0.36), as litter decomposition was similar in all soil fauna exclusions and naphthalene-treated litter. In contrast, reduction of fungal activity significantly inhibited litter decomposition (P < 0.001). Although soil fauna have been mentioned as a key control of litter decomposition in warm deserts, biogeographic legacies and temperature limitation may constrain the importance of these organisms in temperate aridlands, particularly in the southern hemisphere.

Energy, chemical disequilibrium, and geological constraints on Europa.

PubMed

Hand, Kevin P; Carlson, Robert W; Chyba, Christopher F

2007-12-01

Europa is a prime target for astrobiology. The presence of a global subsurface liquid water ocean and a composition likely to contain a suite of biogenic elements make it a compelling world in the search for a second origin of life. Critical to these factors, however, may be the availability of energy for biological processes on Europa. We have examined the production and availability of oxidants and carbon-containing reductants on Europa to better understand the habitability of the subsurface ocean. Data from the Galileo Near-Infrared Mapping Spectrometer were used to constrain the surface abundance of CO(2) to 0.036% by number relative to water. Laboratory results indicate that radiolytically processed CO(2)-rich ices yield CO and H(2)CO(3); the reductants H(2)CO, CH(3)OH, and CH(4) are at most minor species. We analyzed chemical sources and sinks and concluded that the radiolytically processed surface of Europa could serve to maintain an oxidized ocean even if the surface oxidants (O(2), H(2)O(2), CO(2), SO(2), and SO(4) (2)) are delivered only once every approximately 0.5 Gyr. If delivery periods are comparable to the observed surface age (30-70 Myr), then Europa's ocean could reach O(2) concentrations comparable to those found in terrestrial surface waters, even if approximately 10(9) moles yr(1) of hydrothermally delivered reductants consume most of the oxidant flux. Such an ocean would be energetically hospitable for terrestrial marine macrofauna. The availability of reductants could be the limiting factor for biologically useful chemical energy on Europa.

Archaeal Diversity and Distribution along Thermal and Geochemical Gradients in Hydrothermal Sediments at the Yonaguni Knoll IV Hydrothermal Field in the Southern Okinawa Trough▿ †

PubMed Central

Nunoura, Takuro; Oida, Hanako; Nakaseama, Miwako; Kosaka, Ayako; Ohkubo, Satoru B.; Kikuchi, Toru; Kazama, Hiromi; Hosoi-Tanabe, Shoko; Nakamura, Ko-ichi; Kinoshita, Masataka; Hirayama, Hisako; Inagaki, Fumio; Tsunogai, Urumu; Ishibashi, Jun-ichiro; Takai, Ken

2010-01-01

A variety of archaeal lineages have been identified using culture-independent molecular phylogenetic surveys of microbial habitats occurring in deep-sea hydrothermal environments such as chimney structures, sediments, vent emissions, and chemosynthetic macrofauna. With the exception of a few taxa, most of these archaea have not yet been cultivated, and their physiological and metabolic traits remain unclear. In this study, phylogenetic diversity and distribution profiles of the archaeal genes encoding small subunit (SSU) rRNA, methyl coenzyme A (CoA) reductase subunit A, and the ammonia monooxygenase large subunit were characterized in hydrothermally influenced sediments at the Yonaguni Knoll IV hydrothermal field in the Southern Okinawa Trough. Sediment cores were collected at distances of 0.5, 2, or 5 m from a vent emission (90°C). A moderate temperature gradient extends both horizontally and vertically (5 to 69°C), indicating the existence of moderate mixing between the hydrothermal fluid and the ambient sediment pore water. The mixing of reductive hot hydrothermal fluid and cold ambient sediment pore water establishes a wide spectrum of physical and chemical conditions in the microbial habitats that were investigated. Under these different physico-chemical conditions, variability in archaeal phylotype composition was observed. The relationship between the physical and chemical parameters and the archaeal phylotype composition provides important insight into the ecophysiological requirements of uncultivated archaeal lineages in deep-sea hydrothermal vent environments, giving clues for approximating culture conditions to be used in future culturing efforts. PMID:20023079

Stochastic Stability of Sampled Data Systems with a Jump Linear Controller

NASA Technical Reports Server (NTRS)

Gonzalez, Oscar R.; Herencia-Zapana, Heber; Gray, W. Steven

2004-01-01

In this paper an equivalence between the stochastic stability of a sampled-data system and its associated discrete-time representation is established. The sampled-data system consists of a deterministic, linear, time-invariant, continuous-time plant and a stochastic, linear, time-invariant, discrete-time, jump linear controller. The jump linear controller models computer systems and communication networks that are subject to stochastic upsets or disruptions. This sampled-data model has been used in the analysis and design of fault-tolerant systems and computer-control systems with random communication delays without taking into account the inter-sample response. This paper shows that the known equivalence between the stability of a deterministic sampled-data system and the associated discrete-time representation holds even in a stochastic framework.

Nyquist Sampling Theorem: Understanding the Illusion of a Spinning Wheel Captured with a Video Camera

ERIC Educational Resources Information Center

Levesque, Luc

2014-01-01

Inaccurate measurements occur regularly in data acquisition as a result of improper sampling times. An understanding of proper sampling times when collecting data with an analogue-to-digital converter or video camera is crucial in order to avoid anomalies. A proper choice of sampling times should be based on the Nyquist sampling theorem. If the…

Generalization bounds of ERM-based learning processes for continuous-time Markov chains.

PubMed

Zhang, Chao; Tao, Dacheng

2012-12-01

Many existing results on statistical learning theory are based on the assumption that samples are independently and identically distributed (i.i.d.). However, the assumption of i.i.d. samples is not suitable for practical application to problems in which samples are time dependent. In this paper, we are mainly concerned with the empirical risk minimization (ERM) based learning process for time-dependent samples drawn from a continuous-time Markov chain. This learning process covers many kinds of practical applications, e.g., the prediction for a time series and the estimation of channel state information. Thus, it is significant to study its theoretical properties including the generalization bound, the asymptotic convergence, and the rate of convergence. It is noteworthy that, since samples are time dependent in this learning process, the concerns of this paper cannot (at least straightforwardly) be addressed by existing methods developed under the sample i.i.d. assumption. We first develop a deviation inequality for a sequence of time-dependent samples drawn from a continuous-time Markov chain and present a symmetrization inequality for such a sequence. By using the resultant deviation inequality and symmetrization inequality, we then obtain the generalization bounds of the ERM-based learning process for time-dependent samples drawn from a continuous-time Markov chain. Finally, based on the resultant generalization bounds, we analyze the asymptotic convergence and the rate of convergence of the learning process.

RE-EVALUATION OF APPLICABILITY OF AGENCY SAMPLE HOLDING TIMES

EPA Science Inventory

Holding times are the length of time a sample can be stored after collection and prior to analysis without significantly affecting the analytical results. Holding times vary with the analyte, sample matrix, and analytical methodology used to quantify the analytes concentration. ...

Optimal methods for fitting probability distributions to propagule retention time in studies of zoochorous dispersal.

PubMed

Viana, Duarte S; Santamaría, Luis; Figuerola, Jordi

2016-02-01

Propagule retention time is a key factor in determining propagule dispersal distance and the shape of "seed shadows". Propagules dispersed by animal vectors are either ingested and retained in the gut until defecation or attached externally to the body until detachment. Retention time is a continuous variable, but it is commonly measured at discrete time points, according to pre-established sampling time-intervals. Although parametric continuous distributions have been widely fitted to these interval-censored data, the performance of different fitting methods has not been evaluated. To investigate the performance of five different fitting methods, we fitted parametric probability distributions to typical discretized retention-time data with known distribution using as data-points either the lower, mid or upper bounds of sampling intervals, as well as the cumulative distribution of observed values (using either maximum likelihood or non-linear least squares for parameter estimation); then compared the estimated and original distributions to assess the accuracy of each method. We also assessed the robustness of these methods to variations in the sampling procedure (sample size and length of sampling time-intervals). Fittings to the cumulative distribution performed better for all types of parametric distributions (lognormal, gamma and Weibull distributions) and were more robust to variations in sample size and sampling time-intervals. These estimated distributions had negligible deviations of up to 0.045 in cumulative probability of retention times (according to the Kolmogorov-Smirnov statistic) in relation to original distributions from which propagule retention time was simulated, supporting the overall accuracy of this fitting method. In contrast, fitting the sampling-interval bounds resulted in greater deviations that ranged from 0.058 to 0.273 in cumulative probability of retention times, which may introduce considerable biases in parameter estimates. We recommend the use of cumulative probability to fit parametric probability distributions to propagule retention time, specifically using maximum likelihood for parameter estimation. Furthermore, the experimental design for an optimal characterization of unimodal propagule retention time should contemplate at least 500 recovered propagules and sampling time-intervals not larger than the time peak of propagule retrieval, except in the tail of the distribution where broader sampling time-intervals may also produce accurate fits.

Ensemble Sampling vs. Time Sampling in Molecular Dynamics Simulations of Thermal Conductivity

DOE PAGES

Gordiz, Kiarash; Singh, David J.; Henry, Asegun

2015-01-29

In this report we compare time sampling and ensemble averaging as two different methods available for phase space sampling. For the comparison, we calculate thermal conductivities of solid argon and silicon structures, using equilibrium molecular dynamics. We introduce two different schemes for the ensemble averaging approach, and show that both can reduce the total simulation time as compared to time averaging. It is also found that velocity rescaling is an efficient mechanism for phase space exploration. Although our methodology is tested using classical molecular dynamics, the ensemble generation approaches may find their greatest utility in computationally expensive simulations such asmore » first principles molecular dynamics. For such simulations, where each time step is costly, time sampling can require long simulation times because each time step must be evaluated sequentially and therefore phase space averaging is achieved through sequential operations. On the other hand, with ensemble averaging, phase space sampling can be achieved through parallel operations, since each ensemble is independent. For this reason, particularly when using massively parallel architectures, ensemble sampling can result in much shorter simulation times and exhibits similar overall computational effort.« less

78 FR 69322 - Modification of Regulations Regarding Time Limits for Submission of Information Pertaining to...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-11-19

... Pertaining to Requests for Sampling in Antidumping Duty Administrative Reviews AGENCY: International Trade... sampling, and comments on sampling in antidumping (AD) administrative reviews. The modifications to the time limits, if adopted, will more clearly prescribe the time for filing requests for sampling in AD...

Sampling through time and phylodynamic inference with coalescent and birth–death models

PubMed Central

Volz, Erik M.; Frost, Simon D. W.

2014-01-01

Many population genetic models have been developed for the purpose of inferring population size and growth rates from random samples of genetic data. We examine two popular approaches to this problem, the coalescent and the birth–death-sampling model (BDM), in the context of estimating population size and birth rates in a population growing exponentially according to the birth–death branching process. For sequences sampled at a single time, we found the coalescent and the BDM gave virtually indistinguishable results in terms of the growth rates and fraction of the population sampled, even when sampling from a small population. For sequences sampled at multiple time points, we find that the birth–death model estimators are subject to large bias if the sampling process is misspecified. Since BDMs incorporate a model of the sampling process, we show how much of the statistical power of BDMs arises from the sequence of sample times and not from the genealogical tree. This motivates the development of a new coalescent estimator, which is augmented with a model of the known sampling process and is potentially more precise than the coalescent that does not use sample time information. PMID:25401173

Statistical analysis of hydrological response in urbanising catchments based on adaptive sampling using inter-amount times

NASA Astrophysics Data System (ADS)

ten Veldhuis, Marie-Claire; Schleiss, Marc

2017-04-01

In this study, we introduced an alternative approach for analysis of hydrological flow time series, using an adaptive sampling framework based on inter-amount times (IATs). The main difference with conventional flow time series is the rate at which low and high flows are sampled: the unit of analysis for IATs is a fixed flow amount, instead of a fixed time window. We analysed statistical distributions of flows and IATs across a wide range of sampling scales to investigate sensitivity of statistical properties such as quantiles, variance, skewness, scaling parameters and flashiness indicators to the sampling scale. We did this based on streamflow time series for 17 (semi)urbanised basins in North Carolina, US, ranging from 13 km2 to 238 km2 in size. Results showed that adaptive sampling of flow time series based on inter-amounts leads to a more balanced representation of low flow and peak flow values in the statistical distribution. While conventional sampling gives a lot of weight to low flows, as these are most ubiquitous in flow time series, IAT sampling gives relatively more weight to high flow values, when given flow amounts are accumulated in shorter time. As a consequence, IAT sampling gives more information about the tail of the distribution associated with high flows, while conventional sampling gives relatively more information about low flow periods. We will present results of statistical analyses across a range of subdaily to seasonal scales and will highlight some interesting insights that can be derived from IAT statistics with respect to basin flashiness and impact urbanisation on hydrological response.

Authigenic carbonates from active methane seeps offshore southwest Africa

NASA Astrophysics Data System (ADS)

Pierre, Catherine; Blanc-Valleron, Marie-Madeleine; Demange, Jérôme; Boudouma, Omar; Foucher, Jean-Paul; Pape, Thomas; Himmler, Tobias; Fekete, Noemi; Spiess, Volkhard

2012-12-01

The southwest African continental margin is well known for occurrences of active methane-rich fluid seeps associated with seafloor pockmarks at water depths ranging broadly from the shelf to the deep basins, as well as with high gas flares in the water column, gas hydrate accumulations, diagenetic carbonate crusts and highly diverse benthic faunal communities. During the M76/3a expedition of R/V METEOR in 2008, gravity cores recovered abundant authigenic carbonate concretions from three known pockmark sites—Hydrate Hole, Worm Hole, the Regab pockmark—and two sites newly discovered during that cruise, the so-called Deep Hole and Baboon Cluster. The carbonate concretions were commonly associated with seep-benthic macrofauna and occurred within sediments bearing shallow gas hydrates. This study presents selected results from a comprehensive analysis of the mineralogy and isotope geochemistry of diagenetic carbonates sampled at these five pockmark sites. The oxygen isotope stratigraphy obtained from three cores of 2-5 m length indicates a maximum age of about 60,000-80,000 years for these sediments. The authigenic carbonates comprise mostly magnesian calcite and aragonite, associated occasionally with dolomite. Their very low carbon isotopic compositions (-61.0 < δ13C ‰ V-PDB < -40.1) suggest anaerobic oxidation of methane (AOM) as the main process controlling carbonate precipitation. The oxygen isotopic signatures (+2.4 < δ18O ‰ V-PDB < +6.2) lie within the range in equilibrium under present-day/interglacial to glacial conditions of bottom seawater; alternatively, the most positive δ18O values might reflect the contribution of 18O-rich water from gas hydrate decomposition. The frequent occurrence of diagenetic gypsum crystals suggests that reduced sulphur (hydrogen sulphide, pyrite) from sub-seafloor sediments has been oxidized by oxygenated bottom water. The acidity released during this process can potentially induce the dissolution of carbonate, thereby providing enough Ca2+ ions for pore solutions to reach gypsum saturation; this is thought to be promoted by the bio-irrigation and burrowing activity of benthic fauna. The δ18O-δ13C patterns identified in the authigenic carbonates are interpreted to reflect variations in the rate of AOM during the last glacial-interglacial cycle, in turn controlled by variably strong methane fluxes through the pockmarks. These results complement the conclusions of Kasten et al. in this special issue, based on authigenic barite trends at the Hydrate Hole and Worm Hole pockmarks which were interpreted to reflect spatiotemporal variations in AOM related to subsurface gas hydrate formation-decomposition.

Reef flattening effects on total richness and species responses in the Caribbean.

PubMed

Newman, Steven P; Meesters, Erik H; Dryden, Charlie S; Williams, Stacey M; Sanchez, Cristina; Mumby, Peter J; Polunin, Nicholas V C

2015-11-01

There has been ongoing flattening of Caribbean coral reefs with the loss of habitat having severe implications for these systems. Complexity and its structural components are important to fish species richness and community composition, but little is known about its role for other taxa or species-specific responses. This study reveals the importance of reef habitat complexity and structural components to different taxa of macrofauna, total species richness, and individual coral and fish species in the Caribbean. Species presence and richness of different taxa were visually quantified in one hundred 25-m(2) plots in three marine reserves in the Caribbean. Sampling was evenly distributed across five levels of visually estimated reef complexity, with five structural components also recorded: the number of corals, number of large corals, slope angle, maximum sponge and maximum octocoral height. Taking advantage of natural heterogeneity in structural complexity within a particular coral reef habitat (Orbicella reefs) and discrete environmental envelope, thus minimizing other sources of variability, the relative importance of reef complexity and structural components was quantified for different taxa and individual fish and coral species on Caribbean coral reefs using boosted regression trees (BRTs). Boosted regression tree models performed very well when explaining variability in total (82·3%), coral (80·6%) and fish species richness (77·3%), for which the greatest declines in richness occurred below intermediate reef complexity levels. Complexity accounted for very little of the variability in octocorals, sponges, arthropods, annelids or anemones. BRTs revealed species-specific variability and importance for reef complexity and structural components. Coral and fish species occupancy generally declined at low complexity levels, with the exception of two coral species (Pseudodiploria strigosa and Porites divaricata) and four fish species (Halichoeres bivittatus, H. maculipinna, Malacoctenus triangulatus and Stegastes partitus) more common at lower reef complexity levels. A significant interaction between country and reef complexity revealed a non-additive decline in species richness in areas of low complexity and the reserve in Puerto Rico. Flattening of Caribbean coral reefs will result in substantial species losses, with few winners. Individual structural components have considerable value to different species, and their loss may have profound impacts on population responses of coral and fish due to identity effects of key species, which underpin population richness and resilience and may affect essential ecosystem processes and services. © 2015 The Authors. Journal of Animal Ecology © 2015 British Ecological Society.

Light beam range finder

DOEpatents

McEwan, Thomas E.

1998-01-01

A "laser tape measure" for measuring distance which includes a transmitter such as a laser diode which transmits a sequence of electromagnetic pulses in response to a transmit timing signal. A receiver samples reflections from objects within the field of the sequence of visible electromagnetic pulses with controlled timing, in response to a receive timing signal. The receiver generates a sample signal in response to the samples which indicates distance to the object causing the reflections. The timing circuit supplies the transmit timing signal to the transmitter and supplies the receive timing signal to the receiver. The receive timing signal causes the receiver to sample the reflection such that the time between transmission of pulses in the sequence in sampling by the receiver sweeps over a range of delays. The transmit timing signal causes the transmitter to transmit the sequence of electromagnetic pulses at a pulse repetition rate, and the received timing signal sweeps over the range of delays in a sweep cycle such that reflections are sampled at the pulse repetition rate and with different delays in the range of delays, such that the sample signal represents received reflections in equivalent time. The receiver according to one aspect of the invention includes an avalanche photodiode and a sampling gate coupled to the photodiode which is responsive to the received timing signal. The transmitter includes a laser diode which supplies a sequence of visible electromagnetic pulses. A bright spot projected on to the target clearly indicates the point that is being measured, and the user can read the range to that point with precision of better than 0.1%.

Light beam range finder

DOEpatents

McEwan, T.E.

1998-06-16

A ``laser tape measure`` for measuring distance is disclosed which includes a transmitter such as a laser diode which transmits a sequence of electromagnetic pulses in response to a transmit timing signal. A receiver samples reflections from objects within the field of the sequence of visible electromagnetic pulses with controlled timing, in response to a receive timing signal. The receiver generates a sample signal in response to the samples which indicates distance to the object causing the reflections. The timing circuit supplies the transmit timing signal to the transmitter and supplies the receive timing signal to the receiver. The receive timing signal causes the receiver to sample the reflection such that the time between transmission of pulses in the sequence in sampling by the receiver sweeps over a range of delays. The transmit timing signal causes the transmitter to transmit the sequence of electromagnetic pulses at a pulse repetition rate, and the received timing signal sweeps over the range of delays in a sweep cycle such that reflections are sampled at the pulse repetition rate and with different delays in the range of delays, such that the sample signal represents received reflections in equivalent time. The receiver according to one aspect of the invention includes an avalanche photodiode and a sampling gate coupled to the photodiode which is responsive to the received timing signal. The transmitter includes a laser diode which supplies a sequence of visible electromagnetic pulses. A bright spot projected on to the target clearly indicates the point that is being measured, and the user can read the range to that point with precision of better than 0.1%. 7 figs.

El Niño and similar perturbation effects on the benthos of the Humboldt, California, and Benguela Current upwelling ecosystems

NASA Astrophysics Data System (ADS)

Arntz, W. E.; Gallardo, V. A.; Gutiérrez, D.; Isla, E.; Levin, L. A.; Mendo, J.; Neira, C.; Rowe, G. T.; Tarazona, J.; Wolff, M.

2006-03-01

To a certain degree, Eastern Boundary Current (EBC) ecosystems are similar: Cold bottom water from moderate depths, rich in nutrients, is transported to the euphotic zone by a combination of trade winds, Coriolis force and Ekman transport. The resultant high primary production fuels a rich secondary production in the upper pelagic and nearshore zones, but where O2 exchange is restricted, it creates oxygen minimum zones (OMZs) at shelf and upper slope (Humboldt and Benguela Current) or slope depths (California Current). These hypoxic zones host a specifically adapted, small macro- and meiofauna together with giant sulphur bacteria that use nitrate to oxydise H2S. In all EBC, small polychaetes, large nematodes and other opportunistic benthic species have adapted to the hypoxic conditions and co-exist with sulphur bacteria, which seem to be particularly dominant off Peru and Chile. However, a massive reduction of macrobenthos occurs in the core of the OMZ. In the Humboldt Current area the OMZ ranges between <100 and about 600 m, with decreasing thickness in a poleward direction. The OMZ merges into better oxygenated zones towards the deep sea, where large cold-water mega- and macrofauna occupy a dominant role as in the nearshore strip. The Benguela Current OMZ has a similar upper limit but remains shallower. It also hosts giant sulphur bacteria but little is known about the benthic fauna. However, sulphur eruptions and intense hypoxia might preclude the coexistence of significant mega- und macrobenthos. Conversely, off North America the upper limit of the OMZ is considerably deeper (e.g., 500-600 m off California and Oregon), and the lower boundary may exceed 1000m. The properties described are valid for very cold and cold (La Niña and "normal") ENSO conditions with effective upwelling of nutrient-rich bottom water. During warm (El Niño) episodes, warm water masses of low oxygen concentration from oceanic and equatorial regions enter the upwelling zones, bringing a variety of (sub)tropical immigrants. The autochthonous benthic fauna emigrates to deeper water or poleward, or suffers mortality. However, some local macrofaunal species experience important population proliferations, presumably due to improved oxygenation (in the southern hemisphere), higher temperature tolerance, reduced competition or the capability to use different food. Both these negative and positive effects of El Niño influence local artisanal fisheries and the livelihood of coastal populations. In the Humboldt Current system the hypoxic seafloor at outer shelf depths receives important flushing from the equatorial zone, causing havoc on the sulphur bacteria mats and immediate recolonisation of the sediments by mega- and macrofauna. Conversely, off California, the intruding equatorial water masses appear to have lower oxygen than ambient waters, and may cause oxygen deficiency at upper slope depths. Effects of this change have not been studied in detail, although shrimp and other taxa appear to alter their distribution on the continental margin. Other properties and reactions of the two Pacific EBC benthic ecosystems to El Niño seem to differ, too, as does the overall impact of major episodes (e.g., 1982/1983(1984) vs. 1997/1998). The relation of the "Benguela Niño" to ENSO seems unclear although many Pacific-Atlantic ocean and atmosphere teleconnections have been described. Warm, low-oxygen equatorial water seems to be transported into the upwelling area by similar mechanisms as in the Pacific, but most major impacts on the eukaryotic biota obviously come from other, independent perturbations such as an extreme eutrophication of the sediments ensuing in sulphidic eruptions and toxic algal blooms. Similarities and differences of the Humboldt and California Current benthic ecosystems are discussed with particular reference to ENSO impacts since 1972/73. Where there are data available, the authors include the Benguela Current ecosystem as another important, non-Pacific EBC, which also suffers from the effects of hypoxia.

Evaluation of timing of re-appearance of VBNC Legionella for risk assessment in hospital water distribution systems.

PubMed

Marinelli, L; Cottarelli, A; Solimini, A G; Del Cimmuto, A; De Giusti, M

2017-01-01

In this study we estimated the presence of Legionella species, viable but non-culturable (VBNC), in hospital water networks. We also evaluated the time and load of Legionella appearance in samples found negative using the standard culture method. A total of 42 samples was obtained from the tap water of five hospital buildings. The samples were tested for Legionella by the standard culture method and were monitored for up to 12 months for the appearance of VBNC Legionella. All the 42 samples were negative at the time of collection. Seven of the 42 samples (17.0%) became positive for Legionella at different times of monitoring. The time to the appearance of VBNC Legionella was extremely variable, from 15 days to 9 months from sampling. The most frequent Legionella species observed were Legionella spp and L. anisa and only in one sample L. pneumophila srg.1. Our study confirms the presence of VBNC Legionella in samples resulting negative using the standard culture method and highlights the different time to its appearance that can occur several months after sampling. The results are important for risk assessment and risk management of engineered water systems.

Digital timing: sampling frequency, anti-aliasing filter and signal interpolation filter dependence on timing resolution.

PubMed

Cho, Sanghee; Grazioso, Ron; Zhang, Nan; Aykac, Mehmet; Schmand, Matthias

2011-12-07

The main focus of our study is to investigate how the performance of digital timing methods is affected by sampling rate, anti-aliasing and signal interpolation filters. We used the Nyquist sampling theorem to address some basic questions such as what will be the minimum sampling frequencies? How accurate will the signal interpolation be? How do we validate the timing measurements? The preferred sampling rate would be as low as possible, considering the high cost and power consumption of high-speed analog-to-digital converters. However, when the sampling rate is too low, due to the aliasing effect, some artifacts are produced in the timing resolution estimations; the shape of the timing profile is distorted and the FWHM values of the profile fluctuate as the source location changes. Anti-aliasing filters are required in this case to avoid the artifacts, but the timing is degraded as a result. When the sampling rate is marginally over the Nyquist rate, a proper signal interpolation is important. A sharp roll-off (higher order) filter is required to separate the baseband signal from its replicates to avoid the aliasing, but in return the computation will be higher. We demonstrated the analysis through a digital timing study using fast LSO scintillation crystals as used in time-of-flight PET scanners. From the study, we observed that there is no significant timing resolution degradation down to 1.3 Ghz sampling frequency, and the computation requirement for the signal interpolation is reasonably low. A so-called sliding test is proposed as a validation tool checking constant timing resolution behavior of a given timing pick-off method regardless of the source location change. Lastly, the performance comparison for several digital timing methods is also shown.

Partitioning the contributions of mega-, macro- and meiofauna to benthic metabolism on the upper continental slope of New Zealand: Potential links with environmental factors and trawling intensity

NASA Astrophysics Data System (ADS)

Leduc, Daniel; Pilditch, Conrad A.; Nodder, Scott D.

2016-02-01

Understanding and predicting change in deep-sea benthic ecosystem function remains a major challenge. Here, we conducted analyses combining data on the abundance and biomass of benthic fauna and sediment community oxygen consumption (SCOC) on New Zealand's continental margin to estimate and compare the contributions of meio-, macro-, and megafauna to total benthic metabolism and identify potential links with environmental factors and trawling intensity. We focussed on two regions in close proximity-the high surface primary productivity Chatham Rise and low surface productivity Challenger Plateau. Mean megafauna biomass was twenty times greater on Chatham Rise than Challenger Plateau, likely reflecting differences in food supply between the two regions; this contrast in megafaunal biomass was mainly due to differences in mean body weight rather than abundance. Meio- and macrofauna made similar contributions to SCOC and together accounted for 12% of benthic metabolism on average. In contrast, the estimated contribution of megafauna never exceeded 1.5%. Significant positive correlations between faunal respiration and food availability indicate a link between food supply and benthic community function. Our analyses also show that fauna made a greater contribution to SCOC in conditions of high food availability, and that microorganisms (i.e., the proportion of SCOC not accounted for by the fauna) tended to be more dominant at sites with low food availability. These findings provide support for the concept that large organisms are more strongly affected by a reduction in food resources than small organisms, which in turn underlies one of the most widely described patterns in the deep-sea benthos, i.e., the reduction in organism body size with depth. Because metabolism in deep-sea sediments is typically dominated by microorganisms and small fauna, the absence of a relationship between bottom trawling intensity and the respiration of benthic fauna in the present study may be explained by benthic communities shifting towards smaller body size following physical disturbance. Future studies of deep-sea benthic ecosystem function will need to quantify the indirect influence of fauna on microbial metabolism through activities such as feeding and bioturbation in order to better understand the total contribution of benthic fauna to benthic processes.

Soil biodiversity in artificial black pine stands one year after selective silvicultural treatments

NASA Astrophysics Data System (ADS)

Mocali, Stefano; Fabiani, Arturo; Landi, Silvia; Bianchetto, Elisa; Montini, Piergiuseppe; Samaden, Stefano; Cantiani, Paolo

2017-04-01

The decay of forest cover and soil erosion is a consequence of continual intensive forest exploitation, such as grazing and wild fires over the centuries. From the end of the eighteenth century up to the mid-1900s, black pine plantations were established throughout the Apennines' range in Italy, to improve forest soil quality. The main aim of this silvicultural treatment was to re-establish the pine as a first cover and pioneer species. A series of thinning activities were therefore planned by foresters when these plantations were designed. The project Selpibiolife (LIFE13 BIO/IT/000282) has the main objective to demonstrate the potential of an innovative silvicultural treatment to enhance soil and flora biodiversity and under black pine stands. The monitoring will be carried out by comparing selective and traditional thinning methods (selecting trees from below leaving well-spaced, highest-quality trees) to areas without any silvicultural treatments (e.g. weeding, cleaning, liberation cutting). The monitoring survey was carried out in Pratomagno and Amiata Val D'Orcia areas on the Appennines (Italy) and involved different biotic levels: microorganisms, mesofauna, nematodes and macrofauna (Coleoptera) and flora. The microbial (bacteria and fungi) diversity was assessed by both biochemical (microbial biomass, microbial respiration, metabolic quotient) and molecular (microbiota) approaches whereas QBS (Soil Biological Quality) index and diversity indexes were determined for mesofauna and other organisms, respectively, including flora. The overall results highlighted different a composition and activity of microbial communities within the two areas before thinning, and revealed a significant difference between the overall biodiversity of the two areas. Even though silvicultural treatments provided no significant differences at floristic level, microbial and mesofaunal parameters revealed to be differently affected by treatments. In particular, little but significant differences were observed for mesofauna and nematode community diversity which displayed a higher diversity after thinning in both Amiata and Pratomagno. Nevertheless, Coleoptera showed higher richness values in Pratomagno, where the wood degrader Nebria tibialis subcontracta specie dominated, compared to Amiata. In conclusion, a general increase of soil biodiversity occurred in the plots after thinning compared to untreated control within the two areas, but such results are still heterogeneous and poorly statistically significant. As expected, one year is not enough time to appreciate significant enhance of the overall biodiversity after such silvicultural treatments. Thus, more evident and significant results are expected on the next two years.

Effect of sample volume on metastable zone width and induction time

NASA Astrophysics Data System (ADS)

Kubota, Noriaki

2012-04-01

The metastable zone width (MSZW) and the induction time, measured for a large sample (say>0.1 L) are reproducible and deterministic, while, for a small sample (say<1 mL), these values are irreproducible and stochastic. Such behaviors of MSZW and induction time were theoretically discussed both with stochastic and deterministic models. Equations for the distribution of stochastic MSZW and induction time were derived. The average values of stochastic MSZW and induction time both decreased with an increase in sample volume, while, the deterministic MSZW and induction time remained unchanged. Such different behaviors with variation in sample volume were explained in terms of detection sensitivity of crystallization events. The average values of MSZW and induction time in the stochastic model were compared with the deterministic MSZW and induction time, respectively. Literature data reported for paracetamol aqueous solution were explained theoretically with the presented models.

Gas chromatographic column for the storage of sample profiles

NASA Technical Reports Server (NTRS)

Dimandja, J. M.; Valentin, J. R.; Phillips, J. B.

1994-01-01

The concept of a sample retention column that preserves the true time profile of an analyte of interest is studied. This storage system allows for the detection to be done at convenient times, as opposed to the nearly continuous monitoring that is required by other systems to preserve a sample time profile. The sample storage column is essentially a gas chromatography column, although its use is not the separation of sample components. The functions of the storage column are the selective isolation of the component of interest from the rest of the components present in the sample and the storage of this component as a function of time. Using octane as a test substance, the sample storage system was optimized with respect to such parameters as storage and readout temperature, flow rate through the storage column, column efficiency and storage time. A 3-h sample profile was collected and stored at 30 degrees C for 20 h. The profile was then retrieved, essentially intact, in 5 min at 130 degrees C.

Evaluation of meso fauna soil as bio-indicator of environmental quality in forests remnants in the city of São Paulo - Preliminary Results

NASA Astrophysics Data System (ADS)

Patucci, Natalia; Oliveira, Deborah

2014-05-01

Soil quality is particularly through composition and structure, as well as by, measured by physical and chemical indicators, as well as by living organisms contained therein, which play the most varied ecological functions. The abundance and diversity of soil macrofauna in ecosystems can be affected by many factors, precisely because these organisms are sensitive to environmental changes, whether induced or natural. Thus, soil populations can be measured as bioindicators, since changes in the community may indicate possible changes in soil functioning. This research aims to survey the biodiversity of meso soil fauna environments with remaining Atlantic Forest (Fontes do Ipiranga park, Cantareira park and Jaraguá park) in order to detect specific features and significant changes in ecological function performed by these soil communities. The project aims to develop an overview of multivariate understanding about soil, especially the relation of variation of pedofauna with the occurring physical and chemical modifications in order to be able to prove the adaptation of soil fauna with variations in temperature, humidity, sunshine, influence of vegetation, soil genesis and topographic gradient. According to Lavelle & Spain (2001), the temperature and humidity are the main factors that activate the metabolic regulation in subjects of soil fauna, which ultimately determine their spatial distribution, periods of increased activity, peculiarities and significant changes, the function of these communities in the substrate. Two combining sampling will be performed, one in the rainy season, in January, and another in the dry season, in July, with the purpose of measuring the diversity of populations according to seasonality. Invertebrates associated soil interface - burlap (Moreira et al, 2010) will be caught by pitfall traps, which will be distributed in three installments by park, containing a sampling gride with nine equidistant points 30 meters of each other. Through Provid method, idealized by Antoniolli, ZI et al,. (2006) capture is the use of Pet Bottle 2l as a trap where her windows with dimensions of 6 cm are made powder 4 cm in height of 20 cm which will be buried in the ground. The solution 200ml placed inside the bottle is a mixture of water and a neutral detergent to 2.5%. Identification of macro invertebrate fauna will be made as soon as possible to avoid loss of physiological characteristics or death of the animal, which complicates the identification. During the extraction place the soil or animals collected in a tray, and carefully, with the aid of forceps, pulls out all visible animals, which are passed on to a container containing 70% alcohol, properly identified. With the aid of microscope and are grouped taxonomically in the kingdom, phylum, class and order (Papavero, 1994). To quantify biodiversity, ie, to understand the number of individuals relating the amount and manner in which they are distributed in the environment, the tests of abundance and heterogeneity (Martin & Santos, 1999), Simpson dominance (Odum , 1983), Tukey test 5% and multivariate analysis. Soil surveys (Embrapa, 1997) will be conducted so that the plots overlap to the same kinds of soil stains. Soil samples will be collected near the sampling sites for analysis of some physical parameters (Embrapa, 1997), such as texture, structure, porosity, aggregation, field capacity and compaction ; chemical (Embrapa, 1997) as pH, fractional organic matter, phosphorus, potassium, calcium and magnesium and other mineral nutrients such as nitrogen, sulfur, boron, manganese, zinc, copper, cobalt, chlorinebecause these nutrients are some activators enzymes that perform specific functions in the environment such as: regulation of water balance, fixing and cycling of nutrients in soil, plant growth and development, but also interfere with the functioning of organisms of soil fauna. This analysis is very important in research because the shortage or excess of any of these nutrients cited, may cause changes in soil functioning (Embrapa, 1997). Ecological Indicators ; forests remnants ; soil invertebrates

CHEMICAL TIME-SERIES SAMPLING

EPA Science Inventory

The rationale for chemical time-series sampling has its roots in the same fundamental relationships as govern well hydraulics. Samples of ground water are collected as a function of increasing time of pumpage. The most efficient pattern of collection consists of logarithmically s...

Recent progresses in outcome-dependent sampling with failure time data.

PubMed

Ding, Jieli; Lu, Tsui-Shan; Cai, Jianwen; Zhou, Haibo

2017-01-01

An outcome-dependent sampling (ODS) design is a retrospective sampling scheme where one observes the primary exposure variables with a probability that depends on the observed value of the outcome variable. When the outcome of interest is failure time, the observed data are often censored. By allowing the selection of the supplemental samples depends on whether the event of interest happens or not and oversampling subjects from the most informative regions, ODS design for the time-to-event data can reduce the cost of the study and improve the efficiency. We review recent progresses and advances in research on ODS designs with failure time data. This includes researches on ODS related designs like case-cohort design, generalized case-cohort design, stratified case-cohort design, general failure-time ODS design, length-biased sampling design and interval sampling design.

Recent progresses in outcome-dependent sampling with failure time data

PubMed Central

Ding, Jieli; Lu, Tsui-Shan; Cai, Jianwen; Zhou, Haibo

2016-01-01

An outcome-dependent sampling (ODS) design is a retrospective sampling scheme where one observes the primary exposure variables with a probability that depends on the observed value of the outcome variable. When the outcome of interest is failure time, the observed data are often censored. By allowing the selection of the supplemental samples depends on whether the event of interest happens or not and oversampling subjects from the most informative regions, ODS design for the time-to-event data can reduce the cost of the study and improve the efficiency. We review recent progresses and advances in research on ODS designs with failure time data. This includes researches on ODS related designs like case–cohort design, generalized case–cohort design, stratified case–cohort design, general failure-time ODS design, length-biased sampling design and interval sampling design. PMID:26759313

Synchronization of Hierarchical Time-Varying Neural Networks Based on Asynchronous and Intermittent Sampled-Data Control.

PubMed

Xiong, Wenjun; Patel, Ragini; Cao, Jinde; Zheng, Wei Xing

In this brief, our purpose is to apply asynchronous and intermittent sampled-data control methods to achieve the synchronization of hierarchical time-varying neural networks. The asynchronous and intermittent sampled-data controllers are proposed for two reasons: 1) the controllers may not transmit the control information simultaneously and 2) the controllers cannot always exist at any time . The synchronization is then discussed for a kind of hierarchical time-varying neural networks based on the asynchronous and intermittent sampled-data controllers. Finally, the simulation results are given to illustrate the usefulness of the developed criteria.In this brief, our purpose is to apply asynchronous and intermittent sampled-data control methods to achieve the synchronization of hierarchical time-varying neural networks. The asynchronous and intermittent sampled-data controllers are proposed for two reasons: 1) the controllers may not transmit the control information simultaneously and 2) the controllers cannot always exist at any time . The synchronization is then discussed for a kind of hierarchical time-varying neural networks based on the asynchronous and intermittent sampled-data controllers. Finally, the simulation results are given to illustrate the usefulness of the developed criteria.

An evaluation of flow-stratified sampling for estimating suspended sediment loads

Treesearch

Robert B. Thomas; Jack Lewis

1995-01-01

Abstract - Flow-stratified sampling is a new method for sampling water quality constituents such as suspended sediment to estimate loads. As with selection-at-list-time (SALT) and time-stratified sampling, flow-stratified sampling is a statistical method requiring random sampling, and yielding unbiased estimates of load and variance. It can be used to estimate event...

Gradient-free MCMC methods for dynamic causal modelling

DOE PAGES

Sengupta, Biswa; Friston, Karl J.; Penny, Will D.

2015-03-14

Here, we compare the performance of four gradient-free MCMC samplers (random walk Metropolis sampling, slice-sampling, adaptive MCMC sampling and population-based MCMC sampling with tempering) in terms of the number of independent samples they can produce per unit computational time. For the Bayesian inversion of a single-node neural mass model, both adaptive and population-based samplers are more efficient compared with random walk Metropolis sampler or slice-sampling; yet adaptive MCMC sampling is more promising in terms of compute time. Slice-sampling yields the highest number of independent samples from the target density -- albeit at almost 1000% increase in computational time, in comparisonmore » to the most efficient algorithm (i.e., the adaptive MCMC sampler).« less

Detecting chaos in irregularly sampled time series.

PubMed

Kulp, C W

2013-09-01

Recently, Wiebe and Virgin [Chaos 22, 013136 (2012)] developed an algorithm which detects chaos by analyzing a time series' power spectrum which is computed using the Discrete Fourier Transform (DFT). Their algorithm, like other time series characterization algorithms, requires that the time series be regularly sampled. Real-world data, however, are often irregularly sampled, thus, making the detection of chaotic behavior difficult or impossible with those methods. In this paper, a characterization algorithm is presented, which effectively detects chaos in irregularly sampled time series. The work presented here is a modification of Wiebe and Virgin's algorithm and uses the Lomb-Scargle Periodogram (LSP) to compute a series' power spectrum instead of the DFT. The DFT is not appropriate for irregularly sampled time series. However, the LSP is capable of computing the frequency content of irregularly sampled data. Furthermore, a new method of analyzing the power spectrum is developed, which can be useful for differentiating between chaotic and non-chaotic behavior. The new characterization algorithm is successfully applied to irregularly sampled data generated by a model as well as data consisting of observations of variable stars.

It's Time to Develop a New "Draft Test Protocol" for a Mars Sample Return Mission (or Two…).

PubMed

Rummel, John D; Kminek, Gerhard

2018-04-01

The last time NASA envisioned a sample return mission from Mars, the development of a protocol to support the analysis of the samples in a containment facility resulted in a "Draft Test Protocol" that outlined required preparations "for the safe receiving, handling, testing, distributing, and archiving of martian materials here on Earth" (Rummel et al., 2002 ). This document comprised a specific protocol to be used to conduct a biohazard test for a returned martian sample, following the recommendations of the Space Studies Board of the US National Academy of Sciences. Given the planned launch of a sample-collecting and sample-caching rover (Mars 2020) in 2 years' time, and with a sample return planned for the end of the next decade, it is time to revisit the Draft Test Protocol to develop a sample analysis and biohazard test plan to meet the needs of these future missions. Key Words: Biohazard detection-Mars sample analysis-Sample receiving facility-Protocol-New analytical techniques-Robotic sample handling. Astrobiology 18, 377-380.

Investigation of the influence of sampling schemes on quantitative dynamic fluorescence imaging

PubMed Central

Dai, Yunpeng; Chen, Xueli; Yin, Jipeng; Wang, Guodong; Wang, Bo; Zhan, Yonghua; Nie, Yongzhan; Wu, Kaichun; Liang, Jimin

2018-01-01

Dynamic optical data from a series of sampling intervals can be used for quantitative analysis to obtain meaningful kinetic parameters of probe in vivo. The sampling schemes may affect the quantification results of dynamic fluorescence imaging. Here, we investigate the influence of different sampling schemes on the quantification of binding potential (BP) with theoretically simulated and experimentally measured data. Three groups of sampling schemes are investigated including the sampling starting point, sampling sparsity, and sampling uniformity. In the investigation of the influence of the sampling starting point, we further summarize two cases by considering the missing timing sequence between the probe injection and sampling starting time. Results show that the mean value of BP exhibits an obvious growth trend with an increase in the delay of the sampling starting point, and has a strong correlation with the sampling sparsity. The growth trend is much more obvious if throwing the missing timing sequence. The standard deviation of BP is inversely related to the sampling sparsity, and independent of the sampling uniformity and the delay of sampling starting time. Moreover, the mean value of BP obtained by uniform sampling is significantly higher than that by using the non-uniform sampling. Our results collectively suggest that a suitable sampling scheme can help compartmental modeling of dynamic fluorescence imaging provide more accurate results and simpler operations. PMID:29675325

Sample-Clock Phase-Control Feedback

NASA Technical Reports Server (NTRS)

Quirk, Kevin J.; Gin, Jonathan W.; Nguyen, Danh H.; Nguyen, Huy

2012-01-01

To demodulate a communication signal, a receiver must recover and synchronize to the symbol timing of a received waveform. In a system that utilizes digital sampling, the fidelity of synchronization is limited by the time between the symbol boundary and closest sample time location. To reduce this error, one typically uses a sample clock in excess of the symbol rate in order to provide multiple samples per symbol, thereby lowering the error limit to a fraction of a symbol time. For systems with a large modulation bandwidth, the required sample clock rate is prohibitive due to current technological barriers and processing complexity. With precise control of the phase of the sample clock, one can sample the received signal at times arbitrarily close to the symbol boundary, thus obviating the need, from a synchronization perspective, for multiple samples per symbol. Sample-clock phase-control feedback was developed for use in the demodulation of an optical communication signal, where multi-GHz modulation bandwidths would require prohibitively large sample clock frequencies for rates in excess of the symbol rate. A custom mixedsignal (RF/digital) offset phase-locked loop circuit was developed to control the phase of the 6.4-GHz clock that samples the photon-counting detector output. The offset phase-locked loop is driven by a feedback mechanism that continuously corrects for variation in the symbol time due to motion between the transmitter and receiver as well as oscillator instability. This innovation will allow significant improvements in receiver throughput; for example, the throughput of a pulse-position modulation (PPM) with 16 slots can increase from 188 Mb/s to 1.5 Gb/s.

Impact of collection container material and holding times on sample integrity for mercury and methylmercury in water

DOE Office of Scientific and Technical Information (OSTI.GOV)

Riscassi, Ami L; Miller, Carrie L; Brooks, Scott C

Mercury (Hg) and methylmercury (MeHg) concentrations in streamwater can vary on short timescales (hourly or less) during storm flow and on a diel cycle; the frequency and timing of sampling required to accurately characterize these dynamics may be difficult to accomplish manually. Automated sampling can assist in sample collection; however use has been limited for Hg and MeHg analysis due to stability concerns of trace concentrations during extended storage times. We examined the viability of using automated samplers with disposable low-density polyethylene (LDPE) sample bags to collect industrially contaminated streamwater for unfiltered and filtered Hg and MeHg analysis. Specifically wemore » investigated the effect of holding times ranging from hours to days on streamwater collected during baseflow and storm flow. Unfiltered and filtered Hg and MeHg concentrations decreased with increases in time prior to sample processing; holding times of 24 hours or less resulted in concentration changes (mean 11 7% different) similar to variability in duplicates collected manually during analogous field conditions (mean 7 10% different). Comparisons of samples collected with manual and automated techniques throughout a year for a wide range of stream conditions were also found to be similar to differences observed between duplicate grab samples. These results demonstrate automated sampling into LDPE bags with holding times of 24 hours or less can be effectively used to collect streamwater for Hg and MeHg analysis, and encourage the testing of these materials and methods for implementation in other aqueous systems where high-frequency sampling is warranted.« less

On the continuous dependence with respect to sampling of the linear quadratic regulator problem for distributed parameter systems

NASA Technical Reports Server (NTRS)

Rosen, I. G.; Wang, C.

1990-01-01

The convergence of solutions to the discrete or sampled time linear quadratic regulator problem and associated Riccati equation for infinite dimensional systems to the solutions to the corresponding continuous time problem and equation, as the length of the sampling interval (the sampling rate) tends toward zero (infinity) is established. Both the finite and infinite time horizon problems are studied. In the finite time horizon case, strong continuity of the operators which define the control system and performance index together with a stability and consistency condition on the sampling scheme are required. For the infinite time horizon problem, in addition, the sampled systems must be stabilizable and detectable, uniformly with respect to the sampling rate. Classes of systems for which this condition can be verified are discussed. Results of numerical studies involving the control of a heat/diffusion equation, a hereditary of delay system, and a flexible beam are presented and discussed.

On the continuous dependence with respect to sampling of the linear quadratic regulator problem for distributed parameter system

NASA Technical Reports Server (NTRS)

Rosen, I. G.; Wang, C.

1992-01-01

The convergence of solutions to the discrete- or sampled-time linear quadratic regulator problem and associated Riccati equation for infinite-dimensional systems to the solutions to the corresponding continuous time problem and equation, as the length of the sampling interval (the sampling rate) tends toward zero(infinity) is established. Both the finite-and infinite-time horizon problems are studied. In the finite-time horizon case, strong continuity of the operators that define the control system and performance index, together with a stability and consistency condition on the sampling scheme are required. For the infinite-time horizon problem, in addition, the sampled systems must be stabilizable and detectable, uniformly with respect to the sampling rate. Classes of systems for which this condition can be verified are discussed. Results of numerical studies involving the control of a heat/diffusion equation, a hereditary or delay system, and a flexible beam are presented and discussed.

Fast and accurate Monte Carlo sampling of first-passage times from Wiener diffusion models.

PubMed

Drugowitsch, Jan

2016-02-11

We present a new, fast approach for drawing boundary crossing samples from Wiener diffusion models. Diffusion models are widely applied to model choices and reaction times in two-choice decisions. Samples from these models can be used to simulate the choices and reaction times they predict. These samples, in turn, can be utilized to adjust the models' parameters to match observed behavior from humans and other animals. Usually, such samples are drawn by simulating a stochastic differential equation in discrete time steps, which is slow and leads to biases in the reaction time estimates. Our method, instead, facilitates known expressions for first-passage time densities, which results in unbiased, exact samples and a hundred to thousand-fold speed increase in typical situations. In its most basic form it is restricted to diffusion models with symmetric boundaries and non-leaky accumulation, but our approach can be extended to also handle asymmetric boundaries or to approximate leaky accumulation.

Drug-drug interaction predictions with PBPK models and optimal multiresponse sampling time designs: application to midazolam and a phase I compound. Part 1: comparison of uniresponse and multiresponse designs using PopDes.

PubMed

Chenel, Marylore; Bouzom, François; Aarons, Leon; Ogungbenro, Kayode

2008-12-01

To determine the optimal sampling time design of a drug-drug interaction (DDI) study for the estimation of apparent clearances (CL/F) of two co-administered drugs (SX, a phase I compound, potentially a CYP3A4 inhibitor, and MDZ, a reference CYP3A4 substrate) without any in vivo data using physiologically based pharmacokinetic (PBPK) predictions, population PK modelling and multiresponse optimal design. PBPK models were developed with AcslXtreme using only in vitro data to simulate PK profiles of both drugs when they were co-administered. Then, using simulated data, population PK models were developed with NONMEM and optimal sampling times were determined by optimizing the determinant of the population Fisher information matrix with PopDes using either two uniresponse designs (UD) or a multiresponse design (MD) with joint sampling times for both drugs. Finally, the D-optimal sampling time designs were evaluated by simulation and re-estimation with NONMEM by computing the relative root mean squared error (RMSE) and empirical relative standard errors (RSE) of CL/F. There were four and five optimal sampling times (=nine different sampling times) in the UDs for SX and MDZ, respectively, whereas there were only five sampling times in the MD. Whatever design and compound, CL/F was well estimated (RSE < 20% for MDZ and <25% for SX) and expected RSEs from PopDes were in the same range as empirical RSEs. Moreover, there was no bias in CL/F estimation. Since MD required only five sampling times compared to the two UDs, D-optimal sampling times of the MD were included into a full empirical design for the proposed clinical trial. A joint paper compares the designs with real data. This global approach including PBPK simulations, population PK modelling and multiresponse optimal design allowed, without any in vivo data, the design of a clinical trial, using sparse sampling, capable of estimating CL/F of the CYP3A4 substrate and potential inhibitor when co-administered together.

A test of alternative estimators for volume at time 1 from remeasured point samples

Treesearch

Francis A. Roesch; Edwin J. Green; Charles T. Scott

1993-01-01

Two estimators for volume at time 1 for use with permanent horizontal point samples are evaluated. One estimator, used traditionally, uses only the trees sampled at time 1, while the second estimator, originally presented by Roesch and coauthors (F.A. Roesch, Jr., E.J. Green, and C.T. Scott. 1989. For. Sci. 35(2):281-293). takes advantage of additional sample...

A comparison of selection at list time and time-stratified sampling for estimating suspended sediment loads

Treesearch

Robert B. Thomas; Jack Lewis

1993-01-01

Time-stratified sampling of sediment for estimating suspended load is introduced and compared to selection at list time (SALT) sampling. Both methods provide unbiased estimates of load and variance. The magnitude of the variance of the two methods is compared using five storm populations of suspended sediment flux derived from turbidity data. Under like conditions,...

Time-of-travel data for Nebraska streams, 1968 to 1977

USGS Publications Warehouse

Petri, L.R.

1984-01-01

This report documents the results of 10 time-of-travel studies, using ' dye-tracer ' methods, conducted on five streams in Nebraska during the period 1968 to 1977. Streams involved in the studies were the North Platte, North Loup, Elkhorn, and Big Blue Rivers and Salt Creek. Rhodamine WT dye in a 20 percent solution was used as the tracer for all 10 time-of-travel studies. Water samples were collected at several points below each injection site. Concentrations of dye in the samples were measured by determining fluorescence of the sample and comparing that value to fluorescence-concentration curves. Stream discharges were measured before and during each study. Results of each time-by-travel study are shown on two tables and on graph. The first table shows water discharge at injection and sampling sites, distance between sites, and time and rate of travel of the dye between sites. The second table provides descriptions of study sites, amounts of dye injected in the streams, actual sampling times, and actual concentrations of dye detected. The graphs for each time-of-travel study provide indications of changing travel rates between sampling sites, information on length of dye clouds, and times for dye passage past given points. (USGS)

Simplified Pan-species Real-time PCR-based Detection of Plasmodium Spp. in Blood Smear.

PubMed

Hassanpour, Gholamreza; Mirhendi, Hossein; Mohebali, Mehdi; Raeisi, Ahmad; Zeraati, Hojjat; Keshavarz, Hossein

2016-01-01

We aimed to quicken and simplify the detection of Plasmodium in blood samples by developing and testing a pan- Plasmodium real-time PCR for accurate screening of individuals suspected of malaria. A single primer/probe set for pan-species Plasmodium -specific real time PCR targeting a conserved region of the small subunit 18S ribosomal DNA was designed and evaluated for rapid diagnosis and screening of malaria infections using dried blood smears. FTA cards were used for rapid and simple DNA extraction. The primers and probes showed a positive response with the DNA extracted from bloods infected with P. falciparum and P. vivax but not with DNA extracted from various smears from uninfected blood samples. Seven positive cases positive by both microscopy and nested PCR were found among 280 blood samples taken from in South and Southeast Iran. Five samples were identified as positive for P. vivax and two as positive for P. falciparum . All positive samples were positive by real-time PCR. Furthermore, all 38-blood samples positive by microscopy were positive by real-time PCR. No microscopy-negative samples were positive by real-time PCR. By using a simple FTA card for DNA extraction and by application of the real-time PCR developed in this study, sensitivity similar to nested-PCR and microscopy was achieved. This format simplifies the detection of Plasmodium in large numbers of samples.

Gradient-free MCMC methods for dynamic causal modelling.

PubMed

Sengupta, Biswa; Friston, Karl J; Penny, Will D

2015-05-15

In this technical note we compare the performance of four gradient-free MCMC samplers (random walk Metropolis sampling, slice-sampling, adaptive MCMC sampling and population-based MCMC sampling with tempering) in terms of the number of independent samples they can produce per unit computational time. For the Bayesian inversion of a single-node neural mass model, both adaptive and population-based samplers are more efficient compared with random walk Metropolis sampler or slice-sampling; yet adaptive MCMC sampling is more promising in terms of compute time. Slice-sampling yields the highest number of independent samples from the target density - albeit at almost 1000% increase in computational time, in comparison to the most efficient algorithm (i.e., the adaptive MCMC sampler). Copyright © 2015 The Authors. Published by Elsevier Inc. All rights reserved.

Clinical evaluation of β-tubulin real-time PCR for rapid diagnosis of dermatophytosis, a comparison with mycological methods.

PubMed

Motamedi, Marjan; Mirhendi, Hossein; Zomorodian, Kamiar; Khodadadi, Hossein; Kharazi, Mahboobeh; Ghasemi, Zeinab; Shidfar, Mohammad Reza; Makimura, Koichi

2017-10-01

Following our previous report on evaluation of the beta tubulin real-time PCR for detection of dermatophytosis, this study aimed to compare the real-time PCR assay with conventional methods for the clinical assessment of its diagnostic performance. Samples from a total of 853 patients with suspected dermatophyte lesions were subjected to direct examination (all samples), culture (499 samples) and real-time PCR (all samples). Fungal DNA was extracted directly from clinical samples using a conical steel bullet, followed by purification with a commercial kit and subjected to the Taq-Man probe-based real-time PCR. The study showed that among the 499 specimens for which all three methods were used, 156 (31.2%), 128 (25.6%) and 205 (41.0%) were found to be positive by direct microscopy, culture and real-time PCR respectively. Real-time PCR significantly increased the detection rate of dermatophytes compared with microscopy (288 vs 229) with 87% concordance between the two methods. The sensitivity, specificity, positive predictive value, and negative predictive value of the real-time PCR was 87.5%, 85%, 66.5% and 95.2% respectively. Although real-time PCR performed better on skin than on nail samples, it should not yet fully replace conventional diagnosis. © 2017 Blackwell Verlag GmbH.

Sampling strategies for estimating acute and chronic exposures of pesticides in streams

USGS Publications Warehouse

Crawford, Charles G.

2004-01-01

The Food Quality Protection Act of 1996 requires that human exposure to pesticides through drinking water be considered when establishing pesticide tolerances in food. Several systematic and seasonally weighted systematic sampling strategies for estimating pesticide concentrations in surface water were evaluated through Monte Carlo simulation, using intensive datasets from four sites in northwestern Ohio. The number of samples for the strategies ranged from 4 to 120 per year. Sampling strategies with a minimal sampling frequency outside the growing season can be used for estimating time weighted mean and percentile concentrations of pesticides with little loss of accuracy and precision, compared to strategies with the same sampling frequency year round. Less frequent sampling strategies can be used at large sites. A sampling frequency of 10 times monthly during the pesticide runoff period at a 90 km 2 basin and four times monthly at a 16,400 km2 basin provided estimates of the time weighted mean, 90th, 95th, and 99th percentile concentrations that fell within 50 percent of the true value virtually all of the time. By taking into account basin size and the periodic nature of pesticide runoff, costs of obtaining estimates of time weighted mean and percentile pesticide concentrations can be minimized.

40 CFR 80.1653 - Recordkeeping.

Code of Federal Regulations, 2014 CFR

2014-07-01

... this subpart O: (i) The location, date, time, and storage tank or truck identification for each sample... analytical testing: (i) The location, date, time, and storage tank or truck identification for each sample..., time, and storage tank or truck identification for each sample collected. (B) The name and title of the...

Time's up. descriptive epidemiology of multi-morbidity and time spent on health related activity by older Australians: a time use survey.

PubMed

Jowsey, Tanisha; McRae, Ian S; Valderas, Jose M; Dugdale, Paul; Phillips, Rebecca; Bunton, Robin; Gillespie, James; Banfield, Michelle; Jones, Lesley; Kljakovic, Marjan; Yen, Laurann

2013-01-01

Most Western health systems remain single illness orientated despite the growing prevalence of multi-morbidity. Identifying how much time people with multiple chronic conditions spend managing their health will help policy makers and health service providers make decisions about areas of patient need for support. This article presents findings from an Australian study concerning the time spent on health related activity by older adults (aged 50 years and over), most of whom had multiple chronic conditions. A recall questionnaire was developed, piloted, and adjusted. Sampling was undertaken through three bodies; the Lung Foundation Australia (COPD sub-sample), National Diabetes Services Scheme (Diabetes sub-sample) and National Seniors Australia (Seniors sub-sample). Questionnaires were mailed out during 2011 to 10,600 older adults living in Australia. 2540 survey responses were received and analysed. Descriptive analyses were completed to obtain median values for the hours spent on each activity per month. The mean number of chronic conditions was 3.7 in the COPD sub-sample, 3.4 in the Diabetes sub-sample and 2.0 in the NSA sub-sample. The study identified a clear trend of increased time use associated with increased number of chronic conditions. Median monthly time use was 5-16 hours per month overall for our three sub-samples. For respondents in the top decile with five or more chronic conditions the median time use was equivalent to two to three hours per day, and if exercise is included in the calculations, respondents spent from between five and eight hours per day: an amount similar to full-time work. Multi-morbidity imposes considerable time burdens on patients. Ageing is associated with increasing rates of multi-morbidity. Many older adults are facing high demands on their time to manage their health in the face of decreasing energy and mobility. Their time use must be considered in health service delivery and health system reform.

Detection of bacteria and fungi in blood of patients with febrile neutropenia by real-time PCR with universal primers and probes.

PubMed

Teranishi, Hideto; Ohzono, Nanae; Inamura, Norikazu; Kato, Atsushi; Wakabayashi, Tokio; Akaike, Hiroto; Terada, Kihei; Ouchi, Kazunobu

2015-03-01

Febrile neutropenia is the main treatment-related cause of mortality in cancer patients. During June 2012 to April 2014, 97 blood culture samples were collected from patients receiving chemotherapy for hematological malignancy and cancer with febrile neutropenia episodes (FNEs). The samples were examined for the presence of bacteria and fungi using real-time PCR amplification and sequencing of 16S and 18S rRNA genes. Bacteria were identified in 20 of 97 samples (20.6%) by the real-time PCR assay and in 10 of 97 (10.3%) samples by blood culture. In 6 blood culture-positive samples, the real-time PCR assay detected the same type of bacteria. No fungi were detected by the real-time PCR assay or blood culture. During antibiotic therapy, all samples were negative by blood culture, but the real-time PCR assay yielded a positive result in 2 cases of 2 (100%). The bacterial DNA copy number was not well correlated with the serum C-reactive protein titer of patients with FNEs. We conclude that a real-time PCR assay could provide better detection of causative microbes' in a shorter time, and with a smaller blood sample than blood culture. Using a real-time PCR assay in combination with blood culture could improve microbiological documentation of FNEs. Copyright © 2014 Japanese Society of Chemotherapy and The Japanese Association for Infectious Diseases. Published by Elsevier Ltd. All rights reserved.

Development and validation of a Pneumocystis jirovecii real-time polymerase chain reaction assay for diagnosis of Pneumocystis pneumonia

PubMed Central

Church, Deirdre L; Ambasta, Anshula; Wilmer, Amanda; Williscroft, Holly; Ritchie, Gordon; Pillai, Dylan R; Champagne, Sylvie; Gregson, Daniel G

2015-01-01

BACKGROUND: Pneumocystis jirovecii (PJ), a pathogenic fungus, causes severe interstitial Pneumocystis pneumonia (PCP) among immunocompromised patients. A laboratory-developed real-time polyermase chain reaction (PCR) assay was validated for PJ detection to improve diagnosis of PCP. METHODS: Forty stored bronchoalveolar lavage (BAL) samples (20 known PJ positive [PJ+] and 20 known PJ negative [PJ−]) were initially tested using the molecular assay. Ninety-two sequentially collected BAL samples were then analyzed using an immunofluorescence assay (IFA) and secondarily tested using the PJ real-time PCR assay. Discrepant results were resolved by retesting BAL samples using another real-time PCR assay with a different target. PJ real-time PCR assay performance was compared with the existing gold standard (ie, IFA) and a modified gold standard, in which a true positive was defined as a sample that tested positive in two of three methods in a patient suspected to have PCP. RESULTS: Ninety of 132 (68%) BAL fluid samples were collected from immunocompromised patients. Thirteen of 92 (14%) BALs collected were PJ+ when tested using IFA. A total of 40 BAL samples were PJ+ in the present study including: all IFA positive samples (n=13); all referred PJ+ BAL samples (n=20); and seven additional BAL samples that were IFA negative, but positive using the modified gold standard. Compared with IFA, the PJ real-time PCR had sensitivity, specificity, and positive and negative predictive values of 100%, 91%, 65% and 100%, respectively. Compared with the modified gold standard, PJ real-time PCR had a sensitivity, specificity, and positive and negative predictive values of 100%. CONCLUSION: PJ real-time PCR improved detection of PJ in immunocompromised patients. PMID:26600815

Precise age for the Permian-Triassic boundary in South China from high-precision U-Pb geochronology and Bayesian age-depth modeling

NASA Astrophysics Data System (ADS)

Baresel, Björn; Bucher, Hugo; Brosse, Morgane; Cordey, Fabrice; Guodun, Kuang; Schaltegger, Urs

2017-03-01

This study is based on zircon U-Pb ages of 12 volcanic ash layers and volcanogenic sandstones from two deep water sections with conformable and continuous formational Permian-Triassic boundaries (PTBs) in the Nanpanjiang Basin (South China). Our dates of single, thermally annealed and chemically abraded zircons bracket the PTB in Dongpan and Penglaitan and provide the basis for a first proof-of-concept study utilizing a Bayesian chronology model comparing the three sections of Dongpan, Penglaitan and the Global Stratotype Section and Point (GSSP) at Meishan. Our Bayesian modeling demonstrates that the formational boundaries in Dongpan (251.939 ± 0.030 Ma), Penglaitan (251.984 ± 0.031 Ma) and Meishan (251.956 ± 0.035 Ma) are synchronous within analytical uncertainty of ˜ 40 ka. It also provides quantitative evidence that the ages of the paleontologically defined boundaries, based on conodont unitary association zones in Meishan and on macrofaunas in Dongpan, are identical and coincide with the age of the formational boundaries. The age model also confirms the extreme condensation around the PTB in Meishan, which distorts the projection of any stratigraphic points or intervals onto other more expanded sections by means of Bayesian age-depth models. Dongpan and Penglaitan possess significantly higher sediment accumulation rates and thus offer a greater potential for high-resolution studies of environmental proxies and correlations around the PTB than Meishan. This study highlights the power of high-resolution radio-isotopic ages that allow a robust intercalibration of patterns of biotic changes and fluctuating environmental proxies and will help recognizing their global, regional or local significance.

Nitrogen Fixed By Cyanobacteria Is Utilized By Deposit-Feeders

PubMed Central

Karlson, Agnes M. L.; Gorokhova, Elena; Elmgren, Ragnar

2014-01-01

Benthic communities below the photic zone depend for food on allochthonous organic matter derived from seasonal phytoplankton blooms. In the Baltic Sea, the spring diatom bloom is considered the most important input of organic matter, whereas the contribution of the summer bloom dominated by diazotrophic cyanobacteria is less understood. The possible increase in cyanobacteria blooms as a consequence of eutrophication and climate change calls for evaluation of cyanobacteria effects on benthic community functioning and productivity. Here, we examine utilization of cyanobacterial nitrogen by deposit-feeding benthic macrofauna following a cyanobacteria bloom at three stations during two consecutive years and link these changes to isotopic niche and variations in body condition (assayed as C:N ratio) of the animals. Since nitrogen-fixing cyanobacteria have δ15N close to -2‰, we expected the δ15N in the deposit-feeders to decrease after the bloom if their assimilation of cyanobacteria-derived nitrogen was substantial. We also expected the settled cyanobacteria with their associated microheterotrophic community and relatively high nitrogen content to increase the isotopic niche area, trophic diversity and dietary divergence between individuals (estimated as the nearest neighbour distance) in the benthic fauna after the bloom. The three surface-feeding species (Monoporeia affinis, Macoma balthica and Marenzelleria arctia) showed significantly lower δ15N values after the bloom, while the sub-surface feeder Pontoporeia femorata did not. The effect of the bloom on isotopic niche varied greatly between stations; populations which increased niche area after the bloom had better body condition than populations with reduced niche, regardless of species. Thus, cyanobacterial nitrogen is efficiently integrated into the benthic food webs in the Baltic, with likely consequences for their functioning, secondary production, transfer efficiency, trophic interactions, and intra- and interspecific competition. PMID:25105967

Species effects on ecosystem processes are modified by faunal responses to habitat composition.

PubMed

Bulling, Mark T; Solan, Martin; Dyson, Kirstie E; Hernandez-Milian, Gema; Luque, Patricia; Pierce, Graham J; Raffaelli, Dave; Paterson, David M; White, Piran C L

2008-12-01

Heterogeneity is a well-recognized feature of natural environments, and the spatial distribution and movement of individual species is primarily driven by resource requirements. In laboratory experiments designed to explore how different species drive ecosystem processes, such as nutrient release, habitat heterogeneity is often seen as something which must be rigorously controlled for. Most small experimental systems are therefore spatially homogeneous, and the link between environmental heterogeneity and its effects on the redistribution of individuals and species, and on ecosystem processes, has not been fully explored. In this paper, we used a mesocosm system to investigate the relationship between habitat composition, species movement and sediment nutrient release for each of four functionally contrasting species of marine benthic invertebrate macrofauna. For each species, various habitat configurations were generated by selectively enriching patches of sediment with macroalgae, a natural source of spatial variability in intertidal mudflats. We found that the direction and extent of faunal movement between patches differs with species identity, density and habitat composition. Combinations of these factors lead to concomitant changes in nutrient release, such that habitat composition effects are modified by species identity (in the case of NH4-N) and by species density (in the case of PO4-P). It is clear that failure to accommodate natural patterns of spatial heterogeneity in such studies may result in an incomplete understanding of system behaviour. This will be particularly important for future experiments designed to explore the effects of species richness on ecosystem processes, where the complex interactions reported here for single species may be compounded when species are brought together in multi-species combinations.

Ecological Functioning in Two Mid-Atlantic Bight Submarine Canyons: Macrofauna Community Trends and the Role of Canyon Specific Processes

NASA Astrophysics Data System (ADS)

Robertson, C.; Bourque, J. R.; Davies, A. J.; Duineveld, G.; Mienis, F.; Brooke, S.; Ross, S. W.; Demopoulos, A. W.

2016-02-01

Submarine canyons are complex systems, acting as major conduits of organic matter along continental shelves and promoting gradients in food resources, turbidity flows, habitat heterogeneity, and areas of sediment resuspension and deposition. In the western North Atlantic, a large multidisciplinary program was conducted in two major Mid-Atlantic Bight (MAB) canyons (Baltimore and Norfolk canyons). This Atlantic Deepwater Canyons project was funded by BOEM, NOAA, and USGS. Here we investigate the `canyon effect' on benthic ecosystem ecology and functioning of two canyon systems by defining canyon specific processes influencing MAB shelf benthic community trends. Sediment cores were collected in 2012 and 2013 with a NIOZ box corer along the main axes ( 180-1200m) of Baltimore and Norfolk Canyon and at comparable depths on the adjacent continental slope. Whole community macrofaunal (>300 μm) abundance and biomass data provided insight into community trends across depth and biogeochemical gradients by coupling diversity metrics and biological trait analyses with sediment biogeochemistry and hydrodynamic data. The canyons exhibited clear differences in sediment profiles, hydrodynamic regimes and enrichment depocenters as well as significantly distinct infauna communities. Interestingly, both canyons showed bimodal distributions in abundances and diversity of infauna and a shallowing of species maxima which was not present on adjacent slopes. We hypothesize that physical canyon processes are important regulators in the depth of observed species maxima and community functioning on the MAB shelf, on local and regional scales. Unique sediment dynamics, organic enrichment, and hydrographic conditions were significant factors in structuring benthic community differences in MAB canyons The study provides a complete benthic infaunal appraisal of two canyon systems in the western Atlantic, incorporating biogeochemistry and oceanography to increase our understanding of canyon ecosystem ecology and provide baseline information on canyon functioning.

The response of abyssal organisms to low pH conditions during a series of CO2-release experiments simulating deep-sea carbon sequestration

NASA Astrophysics Data System (ADS)

Barry, J. P.; Buck, K. R.; Lovera, C.; Brewer, P. G.; Seibel, B. A.; Drazen, J. C.; Tamburri, M. N.; Whaling, P. J.; Kuhnz, L.; Pane, E. F.

2013-08-01

The effects of low-pH, high-pCO2 conditions on deep-sea organisms were examined during four deep-sea CO2 release experiments simulating deep-ocean C sequestration by the direct injection of CO2 into the deep sea. We examined the survival of common deep-sea, benthic organisms (microbes; macrofauna, dominated by Polychaeta, Nematoda, Crustacea, Mollusca; megafauna, Echinodermata, Mollusca, Pisces) exposed to low-pH waters emanating as a dissolution plume from pools of liquid carbon dioxide released on the seabed during four abyssal CO2-release experiments. Microbial abundance in deep-sea sediments was unchanged in one experiment, but increased under environmental hypercapnia during another, where the microbial assemblage may have benefited indirectly from the negative impact of low-pH conditions on other taxa. Lower abyssal metazoans exhibited low survival rates near CO2 pools. No urchins or holothurians survived during 30-42 days of exposure to episodic, but severe environmental hypercapnia during one experiment (E1; pH reduced by as much as ca. 1.4 units). These large pH reductions also caused 75% mortality for the deep-sea amphipod, Haploops lodo, near CO2 pools. Survival under smaller pH reductions (ΔpH<0.4 units) in other experiments (E2, E3, E5) was higher for all taxa, including echinoderms. Gastropods, cephalopods, and fish were more tolerant than most other taxa. The gastropod Retimohnia sp. and octopus Benthoctopus sp. survived exposure to pH reductions that episodically reached -0.3 pH units. Ninety percent of abyssal zoarcids (Pachycara bulbiceps) survived exposure to pH changes reaching ca. -0.3 pH units during 30-42 day-long experiments.

The Central Role of the Mississippi River and its Delta in the Oceanography, Ecology and Economy of the Gulf of Mexico: A Synthesis

NASA Astrophysics Data System (ADS)

Kolker, A.; Chu, P. Y.; Taylor, C.; Roberts, B. J.; Renfro, A. A.; Peyronnin, N.; Fitzpatrick, C.

2017-12-01

While it has long been recognized that the Mississippi River is the largest source of freshwater, nutrients and sediments to the Gulf of Mexico, many questions remain unanswered about the impacts of the material on oceanography of the system. Here we report on the results of a regional synthesis study that examined how the Mississippi River and its delta influence the oceanography, ecology and the economy of the Gulf of Mexico. By employing a series of expert-opinion working groups, and using multi-dimensional numerical physical oceanographic models coupled to in-situ environmental data, this project is working to quantify how variability in discharge, meteorological forcings, and seasonal conditions influence the spatial distribution of the Mississippi River plume and its influence. Results collected to date indicate that the dimensions of the river plume are closely coupled to discharge, but in a non-linear fashion, that incorporates fluxes, flow distributions, offshore and meteorological forcings in the context of the local bathymetry. Ongoing research is using these human and numerical tools to help further elucidate the impacts of this river on the biogeochemistry of the region, and the distribution of key macrofauna. Further work by this team is examining how the delta's impacts on the ecology of the region, and the role that the delta plays as both a source of material for key offshore fauna, and a barrier to dispersal. This information is being used to help further the development of a research agenda for the northern Gulf of Mexico that will be useful through the mid-21st century.

Responses of belowground communities to large aboveground herbivores: Meta-analysis reveals biome-dependent patterns and critical research gaps.

PubMed

Andriuzzi, Walter S; Wall, Diana H

2017-09-01

The importance of herbivore-plant and soil biota-plant interactions in terrestrial ecosystems is amply recognized, but the effects of aboveground herbivores on soil biota remain challenging to predict. To find global patterns in belowground responses to vertebrate herbivores, we performed a meta-analysis of studies that had measured abundance or activity of soil organisms inside and outside field exclosures (areas that excluded herbivores). Responses were often controlled by climate, ecosystem type, and dominant herbivore identity. Soil microfauna and especially root-feeding nematodes were negatively affected by herbivores in subarctic sites. In arid ecosystems, herbivore presence tended to reduce microbial biomass and nitrogen mineralization. Herbivores decreased soil respiration in subarctic ecosystems and increased it in temperate ecosystems, but had no net effect on microbial biomass or nitrogen mineralization in those ecosystems. Responses of soil fauna, microbial biomass, and nitrogen mineralization shifted from neutral to negative with increasing herbivore body size. Responses of animal decomposers tended to switch from negative to positive with increasing precipitation, but also differed among taxa, for instance Oribatida responded negatively to herbivores, whereas Collembola did not. Our findings imply that losses and gains of aboveground herbivores will interact with climate and land use changes, inducing functional shifts in soil communities. To conceptualize the mechanisms behind our findings and link them with previous theoretical frameworks, we propose two complementary approaches to predict soil biological responses to vertebrate herbivores, one focused on an herbivore body size gradient, and the other on a climate severity gradient. Major research gaps were revealed, with tropical biomes, protists, and soil macrofauna being especially overlooked. © 2017 John Wiley & Sons Ltd.

Developing Foram-AMBI for biomonitoring in the Mediterranean: Species assignments to ecological categories

USGS Publications Warehouse

Jorissen, Frans; Nardelli, Maria P.; Almogi-Labin, Ahuva; Barras, Christine; Bergamin, Luisa; Bicchi, Erica; El Kateb, Akram; Ferraro, Luciana; McGann, Mary; Morigi, Caterina; Romano, Elena; Sabattini, Anna; Schweizer, Magali; Spezzaferri, Silvia

2018-01-01

Most environmental bio-monitoring methods using the species composition of marine faunas define the Ecological Quality Status of soft bottom ecosystems based on the relative proportions of species assigned to a limited number of ecological categories. In this study we analyse the distribution patterns of benthic foraminifera in the Mediterranean as a function of organic carbon gradients on the basis of 15 publications and assign the individual species to five ecological categories. Our categories (of sensitive, indifferent and 3rd, 2nd and 1st order opportunists) are very similar to the ecological categories commonly used for macrofauna, but show some minor differences. In the 15 analysed publications, we considered the numerical data of 493 taxa, of which 199 could be assigned. In all 79 taxa were classified as sensitive, 60 as indifferent, 46 as 3rd order, 12 as 2nd order and 2 as 1st order opportunists. The remaining 294 taxa are all accessory, and will only marginally contribute to biotic indices based on relative species proportions. In this paper we wanted also to explain the methodology we used for these species assignments, paying particular attention to all complications and problems encountered. We think that the species list proposed here will constitute a highly useful tool for foraminiferal bio-monitoring of soft bottoms in the Mediterranean Sea, which can be used in different ecological indices (Foram-AMBI and similar methods). With additional information becoming available in the next few years, it will be possible to expand the list, and, if necessary, to apply some minor corrections. As a next step, we intend to test this species list using several biotic indices, in a number of independent data sets, as soon as these will become available.

Improvements of the Profil Cultural Method for a better Low-tech Field Assessment of Soil Structure under no-till

NASA Astrophysics Data System (ADS)

Roger-Estrade, Jean; Boizard, Hubert; Peigné, Josephine; Sasal, Maria Carolina; Guimaraes, Rachel; Piron, Denis; Tomis, Vincent; Vian, Jean-François; Cadoux, Stephane; Ralisch, Ricardo; Filho, Tavares; Heddadj, Djilali; de Battista, Juan; Duparque, Annie

2016-04-01

In France, agronomists have studied the effects of cropping systems on soil structure, using a field method based on a visual description of soil structure. The "profil cultural" method (Manichon and Gautronneau, 1987) has been designed to perform a field diagnostic of the effects of tillage and compaction on soil structure dynamics. This method is of great use to agronomists improving crop management for a better preservation of soil structure. However, this method was developed and mainly used in conventional tillage systems, with ploughing. As several forms of reduced, minimum and no tillage systems are expanding in many parts of the world, it is necessary to re-evaluate the ability of this method to describe and interpret soil macrostructure in unploughed situations. In unploughed fields, soil structure dynamics of untilled layers is mainly driven by compaction and regeneration by natural agents (climatic conditions, root growth and macrofauna) and it is of major importance to evaluate the importance of these natural processes on soil structure regeneration. These concerns have led us to adapt the standard method and to propose amendments based on a series of field observations and experimental work in different situations of cropping systems, soil types and climatic conditions. We improved the description of crack type and we introduced an index of biological activity, based on the visual examination of clods. To test the improved method, a comparison with the reference method was carried out and the ability of the "profil cultural" method to make a diagnosis was tested on five experiments in France, Brazil and Argentina. Using the improved method, the impact of cropping systems on soil functioning was better assessed when natural processes were integrated into the description.

Allometry of animal-microbe interactions and global census of animal-associated microbes.

PubMed

Kieft, Thomas L; Simmons, Karen A

2015-07-07

Animals live in close association with microorganisms, mostly prokaryotes, living in or on them as commensals, mutualists or parasites, and profoundly affecting host fitness. Most animal-microbe studies focus on microbial community structure; for this project, allometry (scaling of animal attributes with animal size) was applied to animal-microbe relationships across a range of species spanning 12 orders of magnitude in animal mass, from nematodes to whales. Microbial abundances per individual animal were gleaned from published literature and also microscopically counted in three species. Abundance of prokaryotes/individual versus animal mass scales as a nearly linear power function (exponent = 1.07, R(2) = 0.94). Combining this power function with allometry of animal abundance indicates that macrofauna have an outsized share of animal-associated microorganisms. The total number of animal-associated prokaryotes in Earth's land animals was calculated to be 1.3-1.4 × 10(25) cells and the total of marine animal-associated microbes was calculated to be 8.6-9.0 × 10(24) cells. Animal-associated microbes thus total 2.1-2.3 × 10(25) of the approximately 10(30) prokaryotes on the Earth. Microbes associated with humans comprise 3.3-3.5% of Earth's animal-associated microbes, and domestic animals harbour 14-20% of all animal-associated microbes, adding a new dimension to the scale of human impact on the biosphere. This novel allometric power function may reflect underlying mechanisms involving the transfer of energy and materials between microorganisms and their animal hosts. Microbial diversity indices of animal gut communities and gut microbial species richness for 60 mammals did not indicate significant scaling relationships with animal body mass; however, further research in this area is warranted. © 2015 The Author(s) Published by the Royal Society. All rights reserved.

Modelling temporal and spatial dynamics of benthic fauna in North-West-European shelf seas

NASA Astrophysics Data System (ADS)

Lessin, Gennadi; Bruggeman, Jorn; Artioli, Yuri; Butenschön, Momme; Blackford, Jerry

2017-04-01

Benthic zones of shallow shelf seas receive high amounts of organic material. Physical processes such as resuspension, as well as complex transformations mediated by diverse faunal and microbial communities, define fate of this material, which can be returned to the water column, reworked within sediments or ultimately buried. In recent years, numerical models of various complexity and serving different goals have been developed and applied in order to better understand and predict dynamics of benthic processes. ERSEM includes explicit parameterisations of several groups of benthic biota, which makes it particularly applicable for studies of benthic biodiversity, biological interactions within sediments and benthic-pelagic coupling. To assess model skill in reproducing temporal (inter-annual and seasonal) dynamics of major benthic macrofaunal groups, 1D model simulation results were compared with data from the Western Channel Observatory (WCO) benthic survey. The benthic model was forced with organic matter deposition rates inferred from observed phytoplankton abundance and model parameters were subsequently recalibrated. Based on model results and WCO data comparison, deposit-feeders exert clear seasonal variability, while for suspension-feeders inter-annual variability is more pronounced. Spatial distribution of benthic fauna was investigated using results of a full-scale NEMO-ERSEM hindcast simulation of the North-West European Shelf Seas area, covering the period of 1981-2014. Results suggest close relationship between spatial distribution of biomass of benthic faunal functional groups in relation to bathymetry, hydrodynamic conditions and organic matter supply. Our work highlights that it is feasible to construct, implement and validate models that explicitly include functional groups of benthic macrofauna. Moreover, the modelling approach delivers detailed information on benthic biogeochemistry and food-web at spatial and temporal scales that are unavailable through other sources but highly relevant to marine management, planning and policy.

Nitrogen fixed by cyanobacteria is utilized by deposit-feeders.

PubMed

Karlson, Agnes M L; Gorokhova, Elena; Elmgren, Ragnar

2014-01-01

Benthic communities below the photic zone depend for food on allochthonous organic matter derived from seasonal phytoplankton blooms. In the Baltic Sea, the spring diatom bloom is considered the most important input of organic matter, whereas the contribution of the summer bloom dominated by diazotrophic cyanobacteria is less understood. The possible increase in cyanobacteria blooms as a consequence of eutrophication and climate change calls for evaluation of cyanobacteria effects on benthic community functioning and productivity. Here, we examine utilization of cyanobacterial nitrogen by deposit-feeding benthic macrofauna following a cyanobacteria bloom at three stations during two consecutive years and link these changes to isotopic niche and variations in body condition (assayed as C:N ratio) of the animals. Since nitrogen-fixing cyanobacteria have δ(15)N close to -2‰, we expected the δ(15)N in the deposit-feeders to decrease after the bloom if their assimilation of cyanobacteria-derived nitrogen was substantial. We also expected the settled cyanobacteria with their associated microheterotrophic community and relatively high nitrogen content to increase the isotopic niche area, trophic diversity and dietary divergence between individuals (estimated as the nearest neighbour distance) in the benthic fauna after the bloom. The three surface-feeding species (Monoporeia affinis, Macoma balthica and Marenzelleria arctia) showed significantly lower δ(15)N values after the bloom, while the sub-surface feeder Pontoporeia femorata did not. The effect of the bloom on isotopic niche varied greatly between stations; populations which increased niche area after the bloom had better body condition than populations with reduced niche, regardless of species. Thus, cyanobacterial nitrogen is efficiently integrated into the benthic food webs in the Baltic, with likely consequences for their functioning, secondary production, transfer efficiency, trophic interactions, and intra- and interspecific competition.

Pairing Quaternary paleoecology and modern ROV exploration to produce novel reconstructions of marine ecosystem responses to millennial-scale climate change

NASA Astrophysics Data System (ADS)

Myhre, S. E.; Pak, D. K.; Borreggine, M. J.; Hill, T. M.; Kennett, J.; Nicholson, C.; Deutsch, C. A.

2017-12-01

One of the most interesting problems for 21st Century marine ecology is understanding the potential physical, chemical, and biological scale of future climate-forced oceanographic changes. These fundamental questions can be informed through the examination of micro- and macrofauna from Quaternary sedimentary sequences, combined with modern observations of continental margin ecosystems. Here we examine Remotely Operated Vehicle (ROV) exploratory videos and sedimentary push cores, to identify biological assemblages, including mollusc, echinoderm, ostracod, and foraminifera density, diversity, and community structure from Santa Barbara Basin in the California Borderland. ROV explorations, from 380-500 meters below sea level (mbsl), describe the zonation of benthic fauna and the distribution of chemosynthetic trophic webs, which are consequences of gradations in the oxygen minimum zone and the ventilating sill depth (475 mbsl). Such observations reveal the modern vertical distribution of chemosynthetic bacterial communities and shallower, diverse communities associated with detrital food webs. Biological assemblages from 16.1-3.4 ka (from core MV0811-15JC, collected at 418 mbsl) produce a suite of paleoceanographic indicators, such as dissolved oxygen concentrations (foraminifera), chemosynthetic trophic webs (molluscs), and water masses (ostracods). These assemblages demonstrate how continental margin ecosystems reorganize vertically (through the water column) and geographically through climate events, for example through the loss of cryophilic species, the ephemeral occurrence of chemosynthetic communities, and the trace fossil evidence (through predation scarring on mollusc shells) of higher trophic web interactions. Together with ROV seafloor observations, these communities can reconstruct step-by-step vertical changes in the zonation of the continental margin, and can identify intervals of zonation change in relation to both Santa Barbara Basin ventilation and the regional California Borderland oxygen minimum zone.

Assessment of derelict soil quality: Abiotic, biotic and functional approaches.

PubMed

Vincent, Quentin; Auclerc, Apolline; Beguiristain, Thierry; Leyval, Corinne

2018-02-01

The intensification and subsequent closing down of industrial activities during the last century has left behind large surfaces of derelict lands. Derelict soils have low fertility, can be contaminated, and many of them remain unused. However, with the increasing demand of soil surfaces, they might be considered as a resource, for example for non-food biomass production. The study of their physico-chemical properties and of their biodiversity and biological activity may provide indications for their potential re-use. The objective of our study was to investigate the quality of six derelict soils, considering abiotic, biotic, and functional parameters. We studied (i) the soil bacteria, fungi, meso- and macro-fauna and plant communities of six different derelict soils (two from coking plants, one from a settling pond, two constructed ones made from different substrates and remediated soil, and an inert waste storage one), and (ii) their decomposition function based on the decomposer trophic network, enzyme activities, mineralization activity, and organic pollutant degradation. Biodiversity levels in these soils were high, but all biotic parameters, except the mycorrhizal colonization level, discriminated them. Multivariate analysis showed that biotic parameters co-varied more with fertility proxies than with soil contamination parameters. Similarly, functional parameters significantly co-varied with abiotic parameters. Among functional parameters, macro-decomposer proportion, enzyme activity, average mineralization capacity, and microbial polycyclic aromatic hydrocarbon degraders were useful to discriminate the soils. We assessed their quality by combining abiotic, biotic, and functional parameters: the compost-amended constructed soil displayed the highest quality, while the settling pond soil and the contaminated constructed soil displayed the lowest. Although differences among the soils were highlighted, this study shows that derelict soils may provide a biodiversity ecosystem service and are functional for decomposition. Copyright © 2017 Elsevier B.V. All rights reserved.

Differences in benthic fauna and sediment among mangrove ( Avicennia marina var. australasica) stands of different ages in New Zealand

NASA Astrophysics Data System (ADS)

Morrisey, D. J.; Skilleter, G. A.; Ellis, J. I.; Burns, B. R.; Kemp, C. E.; Burt, K.

2003-03-01

Management of coastal environments requires understanding of ecological relationships among different habitats and their biotas. Changes in abundance and distribution of mangroves, like those of other coastal habitats, have generally been interpreted in terms of changes in biodiversity or fisheries resources within individual stands. In several parts of their range, anthropogenically increased inputs of sediment to estuaries have led to the spread of mangroves. There is, however, little information on the relative ecological properties, or conservational values, of stands of different ages. The faunal, floral and sedimentological properties of mangrove ( Avicennia marina var. australasica) stands of two different ages in New Zealand has been compared. Older (>60 years) and younger (3-12 years) stands showed clear separation on the basis of environmental characteristics and benthic macrofauna. Numbers of faunal taxa were generally larger at younger sites, and numbers of individuals of several taxa were also larger at these sites. The total number of individuals was not different between the two age-classes, largely due to the presence of large numbers of the surface-living gastropod Potamopyrgus antipodarum at the older sites. It is hypothesized that as mangrove stands mature, the focus of faunal diversity may shift from the benthos to animals living on the mangrove plants themselves, such as insects and spiders, though these were not included in the present study. Differences in the faunas were coincident with differences in the nature of the sediment. Sediments in older stands were more compacted and contained more organic matter and leaf litter. Measurement of leaf chemistry suggested that mangrove plants in the younger stands were able to take up more N and P than those in the older stands.

Changes of benthic fauna in the Kattegat - An indication of climate change at mid-latitudes?

NASA Astrophysics Data System (ADS)

Göransson, Peter

2017-07-01

Several predictions point to changes in the marine benthic macrofauna associated with climate change, but so far only a few and minor changes have been reported. This study relates observed changes in the species composition to climate change by looking on the past decades in the Kattegat between Denmark and Sweden. A reduction of the total number species and a reduction of species with a northern range parallel to an increase of species with a southern range have been observed. The most likely explanation of the changes is the increase in temperature of the bottom water. Increased temperature could change the species distributions but also decrease primary production which impacts recruitment and growth. Hypoxia and bottom trawling could also act synergistic in this process. A sparse occurrence of previously encountered Arctic-Boreal species and critical foundation species, which gives the area its special character, suggests a change in biodiversity and might therefore be designated as early warning signals of a warmer climate. The northern fauna below the halocline with limited capacity of dispersal and low reproduction potential, can be considered as sensitive with low adaptive capacity to climate change. Therefore, not only tropical and high-latitude species, but also benthos on deep bottoms at mid-latitudes, could be vulnerable to warming. As many species live at the edge of their range in the Kattegat, and also are dependent of distant recruitment, large scale changes will probably be detected here at an early stage. It is important to protect relatively undisturbed reference areas in the Kattegat for future studies, but also for preserving a large number of ecosystem services, biotopes, habitats, and fish species.

Constancy despite variability: Local and regional macrofaunal diversity in intertidal seagrass beds

NASA Astrophysics Data System (ADS)

Boyé, Aurélien; Legendre, Pierre; Grall, Jacques; Gauthier, Olivier

2017-12-01

The importance of seagrass habitat for the diversity of benthic fauna has been extensively studied worldwide. Most of the information available is, however, about α diversity while little consideration has been given to β diversity. To fill the knowledge gaps regarding the variability of epifaunal and infaunal seagrass assemblages at large spatial and temporal scales, we scrutinized an extensive dataset covering five years of monitoring of eight intertidal Zostera marina meadows around Brittany (France). High species richness arose at the regional scale from the combination of high local diversity of the meadows and substantial among-meadows β diversity. Epifauna and infauna appeared as distinct self-communities as they displayed different spatial and temporal patterns and varied in their responses to local hydrological conditions. Infauna had higher total β diversity than epifauna due to a tighter link to the great variability of local environmental conditions in the region. Both exhibited substantial variations in species composition and community structure with variations of dominant species that were accompanied by extensive change in numerous rare species. The dominant epifaunal species were all grazers. Changes in species composition were induced mostly by species replacement and rarely by richness differences between meadows. Indeed, species richness remained within a narrow range for all seagrass beds, suggesting a potential carrying capacity for species richness of the meadows. Overall, all meadows contributed equally to the regional turnover of seagrass macrofauna, emphasizing high variability and complementarity among beds at the regional scale. The implications of this substantial within-seagrass variability for the functioning of benthic ecosystems at broad scale and for conservation purposes in habitat mosaics warrant further investigations but our results clearly advocate taking into account within-habitat variation when evaluating the diversity of benthic habitats and the potential effect of habitat loss.

Effects of vegetation and sewage load on mangrove crab condition using experimental mesocosms

NASA Astrophysics Data System (ADS)

Amaral, Valter; Penha-Lopes, Gil; Paula, José

2009-09-01

Constructed wetlands, especially mangroves, have been studied for their usefulness in sewage treatment but the effects of mangrove vegetation and a sewage load on mangrove macrofauna have been given little attention. Ocypodid crabs are important components of mangrove forests and constitute good bioindicators of the functioning of the ecosystem as a whole. In constructed mangrove mesocosms, three vegetation treatments (bare substratum, and Avicennia marina and Rhizophora mucronata seedlings) were subjected to 0, 20, 60 and 100% sewage loads from a nearby hotel. The physiological condition of introduced Uca annulipes and Uca inversa was evaluated in terms of their RNA/DNA ratio after one, five and twelve months, and used as an indicator of ecological function in the system. Crab condition in 0% sewage load was similar to that of wild crabs throughout, suggesting no significant effects of the mesocosms on their RNA/DNA ratio. Overall, both species coped well with the administered sewage loads, suggesting good ecological function in the system. Both species manifested similar patterns in RNA/DNA ratio, being more affected by seasonal fluctuations than by sewage load and vegetation presence and type. Higher RNA/DNA ratios were recorded in the long compared to the short rainy season. Sewage enhanced crab condition in the bare substratum and R. mucronata treatments, especially after one year, probably as a result of enhanced food availability. Uca inversa may be more sensitive to sewage pollution than U. annulipes. In A. marina, no difference in crab condition was observed between sewage loads, and this mangrove yielded the best reduction in sewage impacts. Our results support the usefulness of constructed mangrove areas in sewage treatment, especially if planted with A. marina and inhabited by physiologically healthy ocypodid crabs to enhance the system's performance.

An integrated approach to the assessment of the eastern Gulf of Finland health: A case study of coastal habitats

NASA Astrophysics Data System (ADS)

Berezina, Nadezhda A.; Gubelit, Yulia I.; Polyak, Yulia M.; Sharov, Andrey N.; Kudryavtseva, Valentina A.; Lubimtsev, Vasily A.; Petukhov, Vasily A.; Shigaeva, Tatyana D.

2017-07-01

Eutrophication and chemical pollution are typical threats to the ecosystem of the Gulf of Finland. This paper aims to make a comprehensive assessment of the environmental status of coastal habitats in the easternmost Gulf of Finland (Neva River estuary) by using different physical, chemical and biotic variables to find cost-effective indicators for further monitoring. During summers of 2014 and 2015 we measured water salinity, phosphorus (eutrophication marker), biomass of harmful filamentous macroalgae (coastline hypoxia inductor), sediment hazardous substances (trace metals, polycyclic aromatic hydrocarbons) and other concomitant characters at 12 sites in the gulf. Also, we analyzed responses of the phytoplankton and benthic organisms, including metal-tolerant and hydrocarbon-oxidizing bacteria, meio- and macrofauna, to these factors. We compared the indicative sensitivity and efficiency of several well-known biotic indices and methods, including a Saprobity system (basing on phytoplankton), Raffaelli and Mason index (meiobenthos), and two macrobenthic derived indices (Goodnight-Whitley Index and Benthic Quality Index). Also, we applied a new index - the embryo malformation frequency in benthic amphipods. To estimate the level of bottom hypoxia induced by the macroalgae blooms, we measured the algal cover and thickness of the algal mats. To verify our assessment, we tested correlations between all used variables. Biotic communities of these areas are subjected to high phosphorus and macroalgae blooms, toxic pollution, water salinity and other factors. We concluded that environmental state of coastal habitats at several southern sites (in Koporskaya Bay and near the developing port Bronka) and near port Primorsk in the north was bad, while the state of the rest of sites was moderate or good. The integrated approach for the assessment may be recommended for monitoring programs as an important tool for studying human-mediated and other effects on brackishwater coastal environments.

Coastal habitats as surrogates for taxonomic, functional and trophic structures of benthic faunal communities.

PubMed

Törnroos, Anna; Nordström, Marie C; Bonsdorff, Erik

2013-01-01

Due to human impact, there is extensive degradation and loss of marine habitats, which calls for measures that incorporate taxonomic as well as functional and trophic aspects of biodiversity. Since such data is less easily quantifiable in nature, the use of habitats as surrogates or proxies for biodiversity is on the rise in marine conservation and management. However, there is a critical gap in knowledge of whether pre-defined habitat units adequately represent the functional and trophic structure of communities. We also lack comparisons of different measures of community structure in terms of both between- (β) and within-habitat (α) variability when accounting for species densities. Thus, we evaluated a priori defined coastal habitats as surrogates for traditional taxonomic, functional and trophic zoobenthic community structure. We focused on four habitats (bare sand, canopy-forming algae, seagrass above- and belowground), all easily delineated in nature and defined through classification systems. We analyzed uni- and multivariate data on species and trait diversity as well as stable isotope ratios of benthic macrofauna. A good fit between habitat types and taxonomic and functional structure was found, although habitats were more similar functionally. This was attributed to within-habitat heterogeneity so when habitat divisions matched the taxonomic structure, only bare sand was functionally distinct. The pre-defined habitats did not meet the variability of trophic structure, which also proved to differentiate on a smaller spatial scale. The quantification of trophic structure using species density only identified an epi- and an infaunal unit. To summarize the results we present a conceptual model illustrating the match between pre-defined habitat types and the taxonomic, functional and trophic community structure. Our results show the importance of including functional and trophic aspects more comprehensively in marine management and spatial planning.

Sediment carbon and nutrient fluxes from cleared and intact temperate mangrove ecosystems and adjacent sandflats.

PubMed

Bulmer, Richard H; Schwendenmann, Luitgard; Lohrer, Andrew M; Lundquist, Carolyn J

2017-12-01

The loss of mangrove ecosystems is associated with numerous impacts on coastal and estuarine function, including sediment carbon and nutrient cycling. In this study we compared in situ fluxes of carbon dioxide (CO 2 ) from the sediment to the atmosphere, and fluxes of dissolved inorganic nutrients and oxygen across the sediment-water interface, in intact and cleared mangrove and sandflat ecosystems in a temperate estuary. Measurements were made 20 and 25months after mangrove clearance, in summer and winter, respectively. Sediment CO 2 efflux was over two-fold higher from cleared than intact mangrove ecosystems at 20 and 25months after mangrove clearance. The higher CO 2 efflux from the cleared site was explained by an increase in respiration of dead root material along with sediment disturbance following mangrove clearance. In contrast, sediment CO 2 efflux from the sandflat site was negligible (≤9.13±1.18mmolm -2 d -1 ), associated with lower sediment organic matter content. The fluxes of inorganic nutrients (NH 4 + , NO x and PO 4 3- ) from intact and cleared mangrove sediments were low (≤20.37±18.66μmolm -2 h - 1 ). The highest NH 4 + fluxes were measured at the sandflat site (69.21±13.49μmolm -2 h - 1 ). Lower inorganic nutrient fluxes within the cleared and intact mangrove sites compared to the sandflat site were associated with lower abundance of larger burrowing macrofauna. Further, a higher fraction of organic matter, silt and clay content in mangrove sediments may have limited nutrient exchange. Copyright © 2017 Elsevier B.V. All rights reserved.

Soil biodiversity in artificial black pine stands after selective silvicultural treatments: preliminary results

NASA Astrophysics Data System (ADS)

Mocali, Stefano; Fabiani, Arturo; Butti, Fabrizio; De Meo, Isabella; Bianchetto, Elisa; Landi, Silvia; Montini, Piergiuseppe; Samaden, Stefano; Cantiani, Paolo

2016-04-01

The decay of forest cover and soil erosion is a consequence of continual intensive forest exploitation, such as grazing and wildfires over the centuries. From the end of the eighteenth century up to the mid-1900s, black pine plantations were established throughout the Apennines' range in Italy, to improve forest soil quality. The main aim of this reafforestation was to re-establish the pine as a first cover, pioneer species. A series of thinning activities were therefore planned by foresters when these plantations were designed. The project Selpibiolife (LIFE13 BIO/IT/000282) has the main objective to demonstrate the potential of an innovative silvicultural treatment to enhance soil biodiversity under black pine stands. The monitoring will be carried out by comparing selective and traditional thinning methods (selecting trees from below leaving well-spaced, highest-quality trees) to areas without any silvicultural treatments (e.g. weeding, cleaning, liberation cutting). The monitoring survey was carried out in Pratomagno and Amiata Val D'Orcia areas on the Appennines (Italy) and involved different biotic levels: microorganisms, mesofauna, nematodes and macrofauna (Coleoptera). The results displayed a significant difference between the overall biodiversity of the two areas. In particular, microbial diversity assessed by both biochemical (microbial biomass, microbial respiration, metabolic quotient) and molecular (PCR-DGGE) approaches highlighted different a composition and activity of microbial communities within the two areas before thinning. Furthermore, little but significant differences were observed for mesofauna and nematode community as well which displayed a higher diversity level in Amiata areas compared to Pratomagno. In contrast, Coleoptera showed higher richness values in Pratomagno, where the wood degrader Nebria tibialis specie dominated, compared to Amiata. As expected, a general degraded biodiversity was observed in both areas before thinning.

Diversified forest ecosystems can grow on industrial waste residues: evidence from a multiproxy approach

NASA Astrophysics Data System (ADS)

Cortet, Jerome; Schwartz, Christophe; Echevarria, Guillaume; Nahmani, Johanne; Masfaraud, Jean-François; Ouvrard, Stéphanie; Sirguey, Catherine; Watteau, Francoise; Morel, Jean Louis

2010-05-01

Smelter activities in the Lorraine region (North-East France) have lead to the creation of flotation ponds that were used to eliminate wastes, mainly slag. After industrial decline, some of these flotation ponds were colonized by vegetation and evolved to forest ecosystems. One of these old flotation ponds, situated in Pompey, close to Nancy (North-East France), was studied by collecting information on several physico-chemical and biological indicators. The main objective was to understand the biological functioning of this system, whose soil can be classified as a pure Technosol, characterised by a very complex stratified profile created by successive slag deposits. Soil is characterized by its apparent heterogeneity, but also its high agronomic fertility and particularly high metal contents. Holorganic horizons can vary from one to several centimetres. Macrofauna is characterized by a very low abundance of earthworms and a dominance of millipedes. Furthermore, whereas earthworms do accumulate metals, this is not the case for millipedes. Mesofauna is typical of a temperate forest system, dominated by Collembola. Soil organo-mineral associations showed a high proportion of faecal pellets from Oribatid mites, Isopods and Diplopods. Furthermore, Mn, which is highly associated to metals (especially Zn and Pb) seems to play an important role in organo-mineral associations, including bacteria. An organic fraction is also directly associated to Calcium, Pb and Cu. Vegetation presents a high diversity, with more than 70 species, with very low metal transfer to plants. Results from soil respirometry are typical from temperate forest ecosystems. All this information has been combined to propose a model for the biochemical functioning of a such Technosol.

Trawl disturbance on benthic communities: chronic effects and experimental predictions.

PubMed

Hinz, Hilmar; Prieto, Virginia; Kaiser, Michel J

2009-04-01

Bottom trawling has widespread impacts on benthic communities and habitats. While the direct impacts of trawl disturbances on benthic communities have been extensively studied, the consequences from long-term chronic disturbances are less well understood. The response of benthic macrofauna to chronic otter-trawl disturbance from a Nephrops norvegicus (Norway lobster) fishery was investigated along a gradient of fishing intensity over a muddy fishing ground in the northeastern Irish Sea. Chronic otter trawling had a significant, negative effect on benthic infauna abundance, biomass, and species richness. Benthic epifauna abundance and species richness also showed a significant, negative response, while no such effect was evident for epibenthic biomass. Furthermore, chronic trawl disturbance led to clear changes in community composition of benthic infauna and epifauna. The results presented indicate that otter-trawl impacts are cumulative and can lead to profound changes in benthic communities, which may have far-reaching implications for the integrity of marine food webs. Studies investigating the short-term effects of fishing manipulations previously concluded that otter trawling on muddy substrates had only modest effects on the benthic biota. Hence, the results presented by this study highlight that data from experimental studies can not be readily extrapolated to an ecosystem level and that subtle cumulative effects may only become apparent when fishing disturbances are examined over larger spatial and temporal scales. Furthermore, this study shows that data on chronic effects of bottom trawling on the benthos will be vital in informing the recently advocated move toward an ecosystem approach in fisheries management. As bottom-trawl fisheries are expanding into ever deeper muddy habitats, the results presented here are an important step toward understanding the global ecosystem effects of bottom trawling.

Sensitivity of macrobenthic secondary production to trawling in the English sector of the Greater North Sea: A biological trait approach

NASA Astrophysics Data System (ADS)

Bolam, S. G.; Coggan, R. C.; Eggleton, J.; Diesing, M.; Stephens, D.

2014-01-01

Demersal trawling constitutes the most significant human impact on both the structure and functioning of coastal seabed fauna. While a number of studies have assessed the impacts of trawling on faunal community structure and the degree to which different taxa are vulnerable to trawling, few have focused on how these impacts affect important ecological functions of the seabed. In this study, we use biological trait analysis (BTA) to assess the relative sensitivity of benthic macrofauna to trawling, in both the short- and long-term, and use this information to describe the spatial variation in sensitivity of secondary production for the Greater North Sea (GNS). Within the GNS, estimates of total production varied by almost three orders of magnitude, from 1.66 kJ m- 2 y- 1 to 968.9 kJ m- 2 y- 1. Large-scale patterns were observed in the proportion of secondary production derived from trawling-sensitive taxa. In the southern North Sea, total production is predominantly governed by taxa with low sensitivity to trawling, whereas production is relatively trawling-sensitive in the northern North Sea and western English Channel. In general, the more sensitive and productive regions are associated with poorly-sorted, gravelly or muddy sediments, while the less sensitive and less productive regions are associated with well-sorted, sandy substrates. These relationships between production sensitivity and environmental features are primarily due to variations in long-term recovery; total production of most assemblages is highly sensitive to the direct impacts of trawling. We discuss the implications of these findings for management 1decisions to improve the environmental sustainability of trawling.

Distribution and ecology of seagrass communities in the Western Indian Ocean

NASA Astrophysics Data System (ADS)

Aleem, A. A.

1. Nine seagrasses were identified and their distributions on coral reef islands and the African coastline studied. 2. Transects were worked to show the vertical zonation of the seagrasses. The more important communities encountered in order from low water spring tide level to the infralittoral were a Halodule uninervis community, a halodule - Thalassi or Thalassia - Cymodocea serrulata community, a Thalassia - Syringodium community, a Thalassia hemprichii community, and finally a Cymodocea ciliata community. 3. Halodule was the main pioneer species. 4. Thalassia and Cymodocea ciliata formed beds which in thelatter seagrass grew at depths of up to 40m. 5. Cymodecea ciliata grew on exposed or semi-exposed shores and formed mats 30-40cm thick. 6. The main environmental factors influencing the zonation of these seagrasses are substrate type, water depth, exposure to waves and current, and tidal range. They grow where water temperatures ranges between 26-30°C, but in littoral pools they may have to withstand temperatures as high as 38°C for short periods. 7. The substrates in which these seagrasses grow range from fine sand and silt to coarse sand mixed with coral debris. Thalassia was the only species which tolerated anoxic sediments and its roots can ramify through black sediments smelling of hydrogen sulphide. Halodule and Syringodium tolerates some lowering of sediment oxygen content. 8. Average standing stock of the main communities expressed as g Fresh Weight per square metre were ss follows: Halodule uninervis, 2430; Halophila ovalis, 465; Thalassia-Halodule, 4250; Thalassia-Cymodecea serrulata, 2907; Thalassia hemprichii, 4125; Cymodocea ciliata, 6050. There was evidence that seagrass biomass increased from LWS down into the infralittoral. The same communities were also analysed for the standing crops of assocated algae and macrofauna.

Macro-Invertebrate Decline in Surface Water Polluted with Imidacloprid

PubMed Central

Van Dijk, Tessa C.; Van Staalduinen, Marja A.; Van der Sluijs, Jeroen P.

2013-01-01

Imidacloprid is one of the most widely used insecticides in the world. Its concentration in surface water exceeds the water quality norms in many parts of the Netherlands. Several studies have demonstrated harmful effects of this neonicotinoid to a wide range of non-target species. Therefore we expected that surface water pollution with imidacloprid would negatively impact aquatic ecosystems. Availability of extensive monitoring data on the abundance of aquatic macro-invertebrate species, and on imidacloprid concentrations in surface water in the Netherlands enabled us to test this hypothesis. Our regression analysis showed a significant negative relationship (P<0.001) between macro-invertebrate abundance and imidacloprid concentration for all species pooled. A significant negative relationship was also found for the orders Amphipoda, Basommatophora, Diptera, Ephemeroptera and Isopoda, and for several species separately. The order Odonata had a negative relationship very close to the significance threshold of 0.05 (P = 0.051). However, in accordance with previous research, a positive relationship was found for the order Actinedida. We used the monitoring field data to test whether the existing three water quality norms for imidacloprid in the Netherlands are protective in real conditions. Our data show that macrofauna abundance drops sharply between 13 and 67 ng l−1. For aquatic ecosystem protection, two of the norms are not protective at all while the strictest norm of 13 ng l−1 (MTR) seems somewhat protective. In addition to the existing experimental evidence on the negative effects of imidacloprid on invertebrate life, our study, based on data from large-scale field monitoring during multiple years, shows that serious concern about the far-reaching consequences of the abundant use of imidacloprid for aquatic ecosystems is justified. PMID:23650513

Overview on the Biochemical Potential of Filamentous Fungi to Degrade Pharmaceutical Compounds

PubMed Central

Olicón-Hernández, Darío R.; González-López, Jesús; Aranda, Elisabet

2017-01-01

Pharmaceuticals represent an immense business with increased demand due to intensive livestock raising and an aging human population, which guarantee the quality of human life and well-being. However, the development of removal technologies for these compounds is not keeping pace with the swift increase in their use. Pharmaceuticals constitute a potential risk group of multiclass chemicals of increasing concern since they are extremely frequent in all environments and have started to exhibit negative effects on micro- and macro-fauna as well as on human health. In this context, fungi are known to be extremely diverse and poorly studied microorganisms despite being well suited for bioremediation processes, taking into account their metabolic and physiological characteristics for the transformation of even highly toxic xenobiotic compounds. Increasing studies indicate that fungi can transform many structures of pharmaceutical compounds, including anti-inflammatories, β-blockers, and antibiotics. This is possible due to different mechanisms in combination with the extracellular and intracellular enzymes, which have broad of biotechnological applications. Thus, fungi and their enzymes could represent a promising tool to deal with this environmental problem. Here, we review the studies performed on pharmaceutical compounds biodegradation by the great diversity of these eukaryotes. We examine the state of the art of the current application of the Basidiomycota division, best known in this field, as well as the assembly of novel biodegradation pathways within the Ascomycota division and the Mucoromycotina subdivision from the standpoint of shared enzymatic systems, particularly for the cytochrome P450 superfamily of enzymes, which appear to be the key enzymes in these catabolic processes. Finally, we discuss the latest advances in the field of genetic engineering for their further application. PMID:28979245

Soil macrofauna webmasters of ecosystem

NASA Astrophysics Data System (ADS)

Frouz, Jan

2015-04-01

The role of plant roots and microflora in shaping many ecosystem processes is generally appreciated in the contrary rho role of soil mcrofauna in this context is assumed to be negligible and rather anecdotic. But more than half of the litter fall is consumed by soil fauna and soil fauna can also consume and or translocation substantial amount of soil. Here we demonstrate on example of post mining chronosequences how site colonization by soil fauna affect composition of whole soil biota community, plant succession and soil formation. Filed and laboratory experiments show that decomposition of fauna feces may be sped up compare to litter at the very beginning but in long term fauna feces decompose slower than litter. This is also supported by micro morphological observation which shows that fauna feces form substantial part of soil. Fauna feces also induce lover or even negative priming effect when introduced in soil in comparison with litter that triggers positive priming effect. Laboratory experiment show that fauna effect is context sensitive and is more pronounced in systems already affected by soil fauna. Soil mixing by soil fauna consequently affect environmental conditions in soils such as water holding capacity or nutrient availability, it also affect composition of decomposer food web including microbial community (fungal bacterial ratio) which feed back in alternation of plant community composition during succession This fauna activity is not constant everywhere the higher effect of fauna activity on litter layer was observed in temperate soils of deciduous forests and with litter having CN between 20-30. In conclusion soil fauna use directly only small proportion of energy in the litter but can substantially affect soil carbon turnover, soil formation, decomposer food web and plant community.

Litter chemistry prevails over litter consumers in mediating effects of past steel industry activities on leaf litter decomposition.

PubMed

Lucisine, Pierre; Lecerf, Antoine; Danger, Michaël; Felten, Vincent; Aran, Delphine; Auclerc, Apolline; Gross, Elisabeth M; Huot, Hermine; Morel, Jean-Louis; Muller, Serge; Nahmani, Johanne; Maunoury-Danger, Florence

2015-12-15

Soil pollution has adverse effects on the performance and life history traits of microorganisms, plants, and animals, yet evidence indicates that even the most polluted sites can support structurally-complex and dynamic ecosystems. The present study aims at determining whether and how litter decomposition, one of the most important soil ecological processes leaf, is affected in a highly trace-metal polluted site. We postulated that past steel mill activities resulting in soil pollution and associated changes in soil characteristics would influence the rate of litter decomposition through two non-exclusive pathways: altered litter chemistry and responses of decomposers to lethal and sub-lethal toxic stress. We carried out a litter-bag experiment using Populus tremula L. leaf litter collected at, and allowed to decompose in, a trace metal polluted site and in three unpolluted sites used as controls. We designed a fully-factorial transplant experimental design to assess effects of litter origin and exposure site on the rate of litter decomposition. We further determined initial litter chemistry, fungal biomass, mesofauna abundance in litter bags, and the soil macrofauna community. Irrespective of the site of litter exposure, litter originating from the polluted site had a two-fold faster decomposition than litter from the unpolluted sites. Litter chemistry, notably the lignin content, seemed most important in explaining the degradation rate of the leaf litter. Abundance of meso and macro-detritivores was higher at the polluted site than at the unpolluted sites. However, litter decomposition proceeded at similar rates in polluted and unpolluted sites. Our results show that trace metal pollution and associated soil and litter changes do not necessarily weaken consumer control on litter decomposition through lethal and sub-lethal toxic stress. Copyright © 2015. Published by Elsevier B.V.

Utilization of shallow-water seagrass detritus by Carribbean deep-sea macrofauna: δ 13C evidence

NASA Astrophysics Data System (ADS)

Suchanek, Thomas H.; Williams, Susan L.; Ogden, John C.; Hubbard, Dennis K.; Gill, Ivan P.

1985-02-01

Three dives were made using the DSRV Alvin in the deep-sea basin north of St. Croix, Virgin Islands. Detrital seagrasses and macrofaunal distributions at 2455 to 3950 m depth were assessed quantitatively. Counts of the manatee grass Syringodium filiforme ( ca. 5 to 100 blades m -2) contrasted sharply with those of the turtle grass Thalassia testudinum ( ca. 0.1 to 2.0 blades m -2), reflecting an abundance proportional to previously reported export rates of the same species from Tague Bay, a nearby shallow source lagoon. Of the macrofaunal consumers that could potentially utilize this detrital nutrient source, three species of holothurians ( Mesothuria verrilli, Psychropotes semperiana, and Benthodytes linqua) and two species of sea urchins ( Hygrosoma petersi and Salencidaris profundi) were collected and/or observed. Gut content analyses revealed that all three holothurians deposit-feed on sediment and at least one species of sea urchin ( H. petersi) feeds almost exclusively on Syringodium. Carbon: nitrogen analyses of naturally occurring abyssal Thalassia detritus showed very low nitrogen content (0.21% N) and a high C:N ratio (214.8), thus yielding a loo nutritional value. Fresh Thalassia blades held in a litter bag experiment (by R. D. Turner) at 3950 m changed little in nitrogen content and C:N ratio after four years. A comparison was made of the stable carbon isotope ratios of 13C: 12C for abyssal seagrass detritus and other potential carbon sources with those for tissues from the holothurian and urchin consumers. The results indicate that a significant proportion of the nutrition of both groups is derived from detrital seagrasses either by direct consumption (sea urchins) or indirectly by deposit-feeding on sediments enriched by decomposed seagrasses (holothurians).

Management of the Wadden Sea

NASA Astrophysics Data System (ADS)

Wolff, W. J.; Zijlstra, J. J.

1980-03-01

The Wadden Sea situated along the North Sea coasts of Denmark, the Federal Republic of Germany and The Netherlands represents one of the world's largest bar-built type of estuaries. The area is a typical sedimentation and mineralization basin, with a large influx of organic matter from the adjoining North Sea, consequently a delicate oxygen balance and a rich benthic macrofauna, poor in species, which serves as food for juveniles of some commercially important North Sea fishes and for large numbers of migrating and wintering waders and waterfowl. Past and present activities of the human society in the area include fisheries (mainly for shrimp and mussels, semi-culture), shipping, land reclamation, recreation, dredging for sand and shells, and waste discharge from industries and human communities. Until the present these activities, although sometimes conflicting, did not fundamentally affect the area and its biota (pollution excluded), but future claims, including the construction of large deep-sea harbours, drilling for natural gas and oil, large-scale land reclamation and increased industrialization etc., might gradually induce degradation. For instance, area reduction by continued land reclamation could lead to irreversible losses of specific biotopes (e. g. salt-marshes, mud-flats), which could affect the size of bird and fish populations in a much wider region. Increased pollution, which has already inflicted damage on bird and seal populations, could reduce the fauna and hence the value of the area as a natural sanctuary. In the event of a proposal for a new human activity in the area, the present standing practice in the countries concerned requires an evaluation of its safety and economic aspects and its environmental impact. However, the various plans are considered separately and there is a general need for integrated management of the area.

Stochastic Stability of Nonlinear Sampled Data Systems with a Jump Linear Controller

NASA Technical Reports Server (NTRS)

Gonzalez, Oscar R.; Herencia-Zapana, Heber; Gray, W. Steven

2004-01-01

This paper analyzes the stability of a sampled- data system consisting of a deterministic, nonlinear, time- invariant, continuous-time plant and a stochastic, discrete- time, jump linear controller. The jump linear controller mod- els, for example, computer systems and communication net- works that are subject to stochastic upsets or disruptions. This sampled-data model has been used in the analysis and design of fault-tolerant systems and computer-control systems with random communication delays without taking into account the inter-sample response. To analyze stability, appropriate topologies are introduced for the signal spaces of the sampled- data system. With these topologies, the ideal sampling and zero-order-hold operators are shown to be measurable maps. This paper shows that the known equivalence between the stability of a deterministic, linear sampled-data system and its associated discrete-time representation as well as between a nonlinear sampled-data system and a linearized representation holds even in a stochastic framework.

Signal processor for processing ultrasonic receiver signals

DOEpatents

Fasching, George E.

1980-01-01

A signal processor is provided which uses an analog integrating circuit in conjunction with a set of digital counters controlled by a precision clock for sampling timing to provide an improved presentation of an ultrasonic transmitter/receiver signal. The signal is sampled relative to the transmitter trigger signal timing at precise times, the selected number of samples are integrated and the integrated samples are transferred and held for recording on a strip chart recorder or converted to digital form for storage. By integrating multiple samples taken at precisely the same time with respect to the trigger for the ultrasonic transmitter, random noise, which is contained in the ultrasonic receiver signal, is reduced relative to the desired useful signal.

Distinguishing non-resonant four-wave-mixing noise in coherent stokes and anti-stokes Raman scattering

NASA Technical Reports Server (NTRS)

Marks, Daniel L. (Inventor); Boppart, Stephen A. (Inventor)

2009-01-01

A method of examining a sample comprises exposing the sample to a pump pulse of electromagnetic radiation for a first period of time, exposing the sample to a stimulant pulse of electromagnetic radiation for a second period of time which overlaps in time with at least a portion of the first exposing, to produce a signal pulse of electromagnetic radiation for a third period of time, and interfering the signal pulse with a reference pulse of electromagnetic radiation, to determine which portions of the signal pulse were produced during the exposing of the sample to the stimulant pulse. The first and third periods of time are each greater than the second period of time.

Impact of the New Abbott mPLUS Feature on Clinical Laboratory Efficiencies of Abbott RealTime Assays for Detection of HIV-1, Hepatitis C Virus, Hepatitis B Virus, Chlamydia trachomatis, and Neisseria gonorrhoeae

PubMed Central

Jones, Sara; Wiesneth, Russ; Barry, Cathy; Webb, Erika; Belova, Larissa; Dolan, Peggy; Ho, Shiaolan; Abravaya, Klara; Cloherty, Gavin

2013-01-01

Diagnostic laboratories are under increasing pressure to improve and expand their services. Greater flexibility in sample processing is a critical factor that can improve the time to results while reducing reagent waste, making laboratories more efficient and cost-effective. The introduction of the Abbott mPLUS feature, with the capacity for extended use of amplification reagents, significantly increases the flexibility of the m2000 platform and enables laboratories to customize their workflows based on sample arrival patterns. The flexibility in sample batch size offered by mPLUS enables significant reductions in processing times. For hepatitis B virus tests, a reduction in sample turnaround times of up to 30% (105 min) was observed for batches of 12 samples compared with those for batches of 24 samples; for Chlamydia trachomatis/Neisseria gonorrhoeae tests, the ability to run batches of 24 samples reduced the turnaround time by 83% (54 min) compared with that for batches of 48 samples. Excellent correlations between mPLUS and m2000 standard condition results were observed for all RealTime viral load assays evaluated in this study, with correlation r values of 0.998 for all assays tested. For the qualitative RealTime C. trachomatis/N. gonorrhoeae assay, the overall agreements between the two conditions tested were >98% for C. trachomatis and 100% for N. gonorrhoeae. Comparable precision results were observed for the two conditions tested for all RealTime assays. The enhanced mPLUS capability provides clinical laboratories with increased efficiencies to meet increasingly stringent turnaround time requirements without increased costs associated with discarding partially used amplification reagents. PMID:24088850

Impact of the New Abbott mPLUS feature on clinical laboratory efficiencies of abbott RealTime assays for detection of HIV-1, Hepatitis C Virus, Hepatitis B Virus, Chlamydia trachomatis, and Neisseria gonorrhoeae.

PubMed

Lucic, Danijela; Jones, Sara; Wiesneth, Russ; Barry, Cathy; Webb, Erika; Belova, Larissa; Dolan, Peggy; Ho, Shiaolan; Abravaya, Klara; Cloherty, Gavin

2013-12-01

Diagnostic laboratories are under increasing pressure to improve and expand their services. Greater flexibility in sample processing is a critical factor that can improve the time to results while reducing reagent waste, making laboratories more efficient and cost-effective. The introduction of the Abbott mPLUS feature, with the capacity for extended use of amplification reagents, significantly increases the flexibility of the m2000 platform and enables laboratories to customize their workflows based on sample arrival patterns. The flexibility in sample batch size offered by mPLUS enables significant reductions in processing times. For hepatitis B virus tests, a reduction in sample turnaround times of up to 30% (105 min) was observed for batches of 12 samples compared with those for batches of 24 samples; for Chlamydia trachomatis/Neisseria gonorrhoeae tests, the ability to run batches of 24 samples reduced the turnaround time by 83% (54 min) compared with that for batches of 48 samples. Excellent correlations between mPLUS and m2000 standard condition results were observed for all RealTime viral load assays evaluated in this study, with correlation r values of 0.998 for all assays tested. For the qualitative RealTime C. trachomatis/N. gonorrhoeae assay, the overall agreements between the two conditions tested were >98% for C. trachomatis and 100% for N. gonorrhoeae. Comparable precision results were observed for the two conditions tested for all RealTime assays. The enhanced mPLUS capability provides clinical laboratories with increased efficiencies to meet increasingly stringent turnaround time requirements without increased costs associated with discarding partially used amplification reagents.

Comparison of sampling methodologies for nutrient monitoring in streams: uncertainties, costs and implications for mitigation

NASA Astrophysics Data System (ADS)

Audet, J.; Martinsen, L.; Hasler, B.; de Jonge, H.; Karydi, E.; Ovesen, N. B.; Kronvang, B.

2014-07-01

Eutrophication of aquatic ecosystems caused by excess concentrations of nitrogen and phosphorus may have harmful consequences for biodiversity and poses a health risk to humans via the water supplies. Reduction of nitrogen and phosphorus losses to aquatic ecosystems involves implementation of costly measures, and reliable monitoring methods are therefore essential to select appropriate mitigation strategies and to evaluate their effects. Here, we compare the performances and costs of three methodologies for the monitoring of nutrients in rivers: grab sampling, time-proportional sampling and passive sampling using flow proportional samplers. Assuming time-proportional sampling to be the best estimate of the "true" nutrient load, our results showed that the risk of obtaining wrong total nutrient load estimates by passive samplers is high despite similar costs as the time-proportional sampling. Our conclusion is that for passive samplers to provide a reliable monitoring alternative, further development is needed. Grab sampling was the cheapest of the three methods and was more precise and accurate than passive sampling. We conclude that although monitoring employing time-proportional sampling is costly, its reliability precludes unnecessarily high implementation expenses.

Comparison of sampling methodologies for nutrient monitoring in streams: uncertainties, costs and implications for mitigation

NASA Astrophysics Data System (ADS)

Audet, J.; Martinsen, L.; Hasler, B.; de Jonge, H.; Karydi, E.; Ovesen, N. B.; Kronvang, B.

2014-11-01

Eutrophication of aquatic ecosystems caused by excess concentrations of nitrogen and phosphorus may have harmful consequences for biodiversity and poses a health risk to humans via water supplies. Reduction of nitrogen and phosphorus losses to aquatic ecosystems involves implementation of costly measures, and reliable monitoring methods are therefore essential to select appropriate mitigation strategies and to evaluate their effects. Here, we compare the performances and costs of three methodologies for the monitoring of nutrients in rivers: grab sampling; time-proportional sampling; and passive sampling using flow-proportional samplers. Assuming hourly time-proportional sampling to be the best estimate of the "true" nutrient load, our results showed that the risk of obtaining wrong total nutrient load estimates by passive samplers is high despite similar costs as the time-proportional sampling. Our conclusion is that for passive samplers to provide a reliable monitoring alternative, further development is needed. Grab sampling was the cheapest of the three methods and was more precise and accurate than passive sampling. We conclude that although monitoring employing time-proportional sampling is costly, its reliability precludes unnecessarily high implementation expenses.