Phytochemical profiles, antioxidant and anti-acetylcholinesterasic activities of the leaf extracts of Rhamnus lycioides subsp. oleoides (L.) Jahand. & Maire in different solvents.

PubMed

Benamar, Houari; Rarivoson, Elonge; Tomassini, Lamberto; Frezza, Claudio; Marouf, Abderrazak; Bennaceur, Malika; Nicoletti, Marcello

2018-01-05

In this work, the extracts obtained with different solvents from the leaves of Rhamnus lycioides subsp. oleoides (L.) Jahand. & Maire were studied for their phytochemical profile and then for their antioxidant and acetylcholinesterase inhibitory activities. The phytochemical profiles of the extracts in n-hexane, dichloromethane, ethyl acetate, methanol, anthraquinone rich and water, showed the presence of different compounds belonging to several classes of natural products such as flavonoids, anthraquinones, saccharides and fatty acids. For what concerns the biological tests, the ethyl acetate, methanol and anthraquinone rich extracts showed the highest activities in both assays due to the high amount of compounds possessing those properties such as flavonoids and anthraquinones. By consequence, these specific extracts of the species may be considered to be potential sources of natural antioxidant and anti-acetylcholinesterasic compounds.

The effect of larval and early adult experience on behavioural plasticity of the aphid parasitoid Aphidius ervi (Hymenoptera, Braconidae, Aphidiinae)

NASA Astrophysics Data System (ADS)

Villagra, Cristian A.; Pennacchio, Francesco; Niemeyer, Hermann M.

2007-11-01

The relevance of the integration of preimaginal and eclosion experiences on the subsequent habitat preferences and mate finding by the adult has been rarely tested in holometabolous insects. In this work, the effect of larval and early adult experiences on the behavioural responses of adult males of the aphid parasitoid, Aphidius ervi, towards volatiles from the host-plant complex (HPC) and from conspecific females were evaluated. Two experience factors were considered: host diet (normal diet=ND; artificial diet=AD), and eclosion, i.e. extraction or non-extraction of the parasitoid larva from the parasitised aphid (extracted=EX; non-extracted=NE). Thus, four treatments were set up: ND/NE, ND/EX, AD/NE and AD/EX. Glass Y-tube olfactometers were used to investigate the responses of adult A. ervi males to the odour sources used. Males from the ND/NE treatment showed a shorter latency to the first choice of olfactometer arms, displayed a marked preference towards the HPC olfactometer arm, and spent more time in the HPC arm than males from the other treatments. Only the interaction of host diet and eclosion experiences proved to be relevant in explaining the differences in latency to first choice, time spent in olfactometers arms, and behaviours displayed in the olfactometer arms. These results show the importance of the integration of larval and eclosion experiences in the development of stereotyped responses of the adults. This process may involve memory retention from the preimaginal and emergence period, but further research is needed to disentangle the contribution of each stage. The response to conspecific females was much less affected by the treatments in relation to first arm choice and times in olfactometer arms, suggesting a pheromone-mediated behaviour, even though a prompter and more intense wing fanning courtship behaviour was registered in the ND/NE males compared to males from the AD/NE treatment. These results show that sexual behaviours are less affected by early experiences than behaviours related with finding a HPC for foraging or oviposition. Taken together, our results demonstrate for first time that larval and eclosion experiences affect in a differential way the early responses of the adult towards environment-derived cues and mate related cues.

Partial aphid resistance in lettuce negatively affects parasitoids.

PubMed

Lanteigne, Marie-Eve; Brodeur, Jacques; Jenni, Sylvie; Boivin, Guy

2014-10-01

This study investigated the effects of partial plant resistance on the lettuce aphid Nasonovia ribisnigri (Mosley) (Hemiptera: Aphididae), a major pest of cultivated lettuce (Lactuca sativa L.), and one of its parasitoids, Aphidius ervi Haliday (Hymenoptera: Braconidae). Aphids were reared on susceptible (L. sativa variety Estival; S) or partially resistant (Lactuca serriola L. PI 491093; PR) lettuce, and next parasitized by A. ervi females. Fitness proxies were measured for both aphids and parasitoids. Developmental time to adult stage took longer for alate and apterous aphids (an average of 3.5 and 1.5 additional days, respectively) on PR than on S lettuce, and fecundity of alate aphids reared on PR lettuce was reduced by 37.8% relative to those reared on S lettuce. Size (tibia length) and weight of aphids reared on PR lettuce were lower than for aphids reared on S lettuce from the third and second instar onward, respectively. Parasitism of aphids reared on PR plants resulted in lower parasitoid offspring emergence (-49.9%), lower adult female (-30.3%) and male (-27.5%) weight, smaller adult female (-17.5%) and male (-11.9%) size, and lower female fecundity (37.8% fewer eggs) than when parasitoids developed from aphids reared on S plants. Our results demonstrate that partial aphid resistance in lettuce negatively affects both the second and third trophic levels. Host plant resistance in cultivated lettuce may therefore create an ecological sink for aphid parasitoids.

Extrathalamic Modulation of Cortical Responsiveness

DTIC Science & Technology

1994-08-01

1988). McEntee, W. J. & Mair, R. G. (1990). The Korsakoff syndrome : a Clonidine improves memory function in schizophrenia indepen- neurochemical...cognition and putati% e neurotransmitters on neuronal activity in monkey auditory rCBF in Korsakoffs psychosis. Psychological Medicine (in the cortw. Brain

Mystery mushroom malingerers: Megaselia marquezi Hartop et al. 2015 (Diptera: Phoridae).

PubMed

Brown, Brian V; Hartop, Emily A

2017-01-01

A mysterious female phorid fly, known for many years to be associated with fungal sporophores ("mushrooms") is identified as Megaselia marquezi Hartop et al. 2015. Male and female flies were collected emerging from the fungus Psathyrella candolleana (Fr.) Maire, and females were observed swarming over the sporophores.

Mystery mushroom malingerers: Megaselia marquezi Hartop et al. 2015 (Diptera: Phoridae)

PubMed Central

Hartop, Emily A.

2017-01-01

Abstract A mysterious female phorid fly, known for many years to be associated with fungal sporophores ("mushrooms") is identified as Megaselia marquezi Hartop et al. 2015. Male and female flies were collected emerging from the fungus Psathyrella candolleana (Fr.) Maire, and females were observed swarming over the sporophores. PMID:28989296

A CRTCal link between energy and life span.

PubMed

Brunet, Anne

2011-04-06

Cutting down calories prolongs life, but how this works remains largely unknown. A recent study in Nature (Mair et al., 2011) shows that life span extension triggered by the energy-sensing protein kinase AMPK is mediated by an evolutionarily conserved transcriptional circuit involving CRTC-1 and CREB. Copyright © 2011 Elsevier Inc. All rights reserved.

Understanding China. Footnotes. Volume 12, Number 1

ERIC Educational Resources Information Center

Kuehner, Trudy

2007-01-01

On October 21-22, 2006, FPRI's Marvin Wachman Fund for International Education hosted 46 teachers from 26 states across the country for a weekend of discussion on teaching about China. Sessions included: (1) Classical Chinese Thought and Culture and Early Chinese History (Victor Mair); (2) State and Society in Late Imperial China (Matthew Sommer);…

Therapeutic potentials of Crataegus azarolus var. eu- azarolus Maire leaves and its isolated compounds.

PubMed

Abu-Gharbieh, Eman; Shehab, Naglaa Gamil

2017-04-18

Hyperglycemia is a complicated condition accompanied with high incidence of infection and dyslipidemia. This study aimed to explore the phyto-constituents of Crataegus azarolus var. eu- azarolus Maire leaves, and to evaluate the therapeutic potentials particularly antimicrobial, antihyperglycemic and antihyperlipidemic of the extract and the isolated compound (3β-O-acetyl ursolic acid). Total phenolics and flavonoidal contents were measured by RP-HPLC analysis. Free radicals scavenging activity of different extraction solvents was tested in-vitro on DPPH free radicals. The antimicrobial activity of the ethanolic extract and its fractions as well as the isolated compounds were evaluated in-vitro on variable microorganisms. Animal models were used to evaluate the antihyperglycemic and antihyperlipidemic activities of the ethanolic extract along with the isolated compound (3β-O acetyl ursolic acid). RP- HPLC analysis of the phenolics revealed high content of rutin, salicylic and ellagic acids. Six compounds belonging to triterpenes and phenolics were isolated from chloroform and n-butanol fractions namely: ursolic acid, 3β-O-acetyl ursolic acid, ellagic acid, quercetin 3-O-β methyl ether, rutin and apigenin7-O-rutinoside. Ethanolic extract showed the highest DPPH radical scavenger activity compared to other solvents. Ethanolic extract, hexane fraction, ursolic acid, 3β-O acetyl ursolic acid and quercetin 3-O-methyl ether showed variable antimicrobial activity against E. coli, P. aeruginosa, S. aureus, and C. albicans. Administration of the ethanolic extract or 3β-O acetyl ursolic acid orally to the mice reduced blood glucose significantly in a time- and dose-dependent manner. Ethanolic extract significantly reduced LDL-C, VLDL-C, TC and TG and increased HDL-C in rats. Ethanolic extract and 3β-O acetyl ursolic acid reduced in-vitro activity of pancreatic lipase. This study reveals that Crataegus azarolus var. eu- azarolus Maire has the efficiency to control hyperglycemia with its associated complications. This study is the first to evaluate antihyperglycemic and antihyperlipidemic potentials of 3β-O acetyl ursolic acid.

Tobacco overexpressing β-ocimene induces direct and indirect responses against aphids in receiver tomato plants.

PubMed

Cascone, Pasquale; Iodice, Luigi; Maffei, Massimo E; Bossi, Simone; Arimura, Gen-Ichiro; Guerrieri, Emilio

2015-01-15

In the last decade plant-to-plant communication has received an increasing attention, particularly for the role of Volatile Organic Compounds as possible elicitors of plant defense. The role of β-ocimene as an interspecific elicitor of plant defense has been recently assessed in multitrophic systems including different plant species (Solanaceae, Poaceae, legumes) and different pest species including chewer insects and phytophagous mites. Both chewer insects and phytophagous mites are known to elicit specific plant defensive pathways which are different (at least in part) from those elicited by sap feeders. The aim of this research was to fill this gap of knowledge and to assess the role of β-ocimene as an elicitor of plant defense against aphid pests, which are sap feeders. For this purpose we used as transgenic tobacco plant releasing an odour plume enriched in this compound as emitter and a tomato plant as receiver. We selected the aphid Macrosiphum euphorbiae and its natural enemy, the parasitoid Aphidius ervi, as the targets of plant induced defense. Tomato plant defense induced by β-ocimene was assessed by characterizing the aphid performance in terms of fixing behaviour, development and reproduction (direct plant defense) and the parasitoid performance in terms of attraction towards tomato plants (indirect plant defense). The characterization of tomato response to β-ocimene was completed by the identification of Volatile Organic Compounds as released by conditioned tomato plants. Tomato plants that were exposed to the volatiles of transgenic tobacco enriched in β-ocimene resulted in less suitable for the aphids in respect to control ones (direct defense). On tomato plants "elicited" by β-ocimene we recorded: a significant lower number of aphids settled; a significant lower number newborn nymphs; a significant lower weight of aphids feeding. In addition, tomato plants "elicited" by β-ocimene resulted became more attractive towards the parasitoid A. ervi than control ones. These results could be explained at least in part by examining the composition of the Volatile Organic Compounds released by tomato plants "elicited" by β-ocimene. Indeed, we found a significantly higher release of several compounds including methyl salicylate and cis-3-hexen-1-ol. These two compounds have been demonstrated to impair aphid development and reproduction and to be involved in the attraction of the aphid parasitoid A. ervi. By considering the ubiquity of β-ocimene and its ability to regulate the communication of plants belonging 30 to different species (if not families), we concluded that this compound is an ideal candidate for new 31 strategies of sustainable control of agricultural pests. Copyright © 2014 Elsevier GmbH. All rights reserved.

Toward a Rhetorical Theory of Metaphor: A Transactive Analysis of Metaphor in the Arts.

ERIC Educational Resources Information Center

Bannister, Linda; And Others

Three professors at Loyola Marymount University, Los Angeles, reflected about a course they taught together on the use of metaphor in language, art and literature. In examining a wide range of art works with their students, including prose by E. A. Poe, Nancy Mairs, Henry James, and Woody Allen and movies such as "Dr.…

Primary and secondary parasitoids (Hymenoptera) of aphids (Hemiptera: Aphididae) on blueberry and other Vaccinium in the Pacific Northwest.

PubMed

Raworth, D A; Pike, K S; Tanigoshi, L K; Mathur, S; Graf, G

2008-04-01

Blueberry scorch virus, a commercially important Carlavirus in highbush blueberry, Vaccinium corymbosum L., is vectored by aphids (Hemiptera: Aphididae). We surveyed the aphids, primary parasitoids (Hymenoptera: Aphelinidae, Braconidae), and associated secondary parasitoids (Hymenoptera: Charipidae, Megaspilidae, Pteromalidae) on highbush blueberry and other Vaccinium in the Pacific Northwest from 1995 to 2006, with samples concentrated in 2005 and 2006, to lay the groundwork for augmentative biological control. Ericaphis fimbriata (Richards) was the principal aphid. The dominant parasitoid species were Praon unicum Smith, Aphidius n. sp., A. sp., and Aphidius ervi Haliday. Their frequency in relation to the other primary parasitoids varied significantly with geographical area; P. unicum dominated the frequency distribution in southwestern British Columbia, A. n. sp., west of the Cascades, and A. sp. and A. ervi east of the Cascades. Among the secondary parasitoids, pteromalids dominated, and their frequency in relation to the other secondary parasitoids was lowest in southwestern British Columbia. The parasitization rate for P. unicum and A. n. sp. in southwestern British Columbia increased from May or June to a maximum of 0.080 +/- 0.024 and 0.090 +/- 0.084 (SD), respectively, in late July or early August. P. unicum emerged in the spring 4 wk before A. n. sp. The parasitization rate for P. unicum was lower in conventional than organic fields. Whereas aphid density increased monotonically, P. unicum had two spring peaks. A simulation model showed that these peaks could reflect discrete generations. Releases of insectary-reared P. unicum at 150 or 450 DD above 5.6 degrees C, summing from 1 January, may effectively augment the natural spring populations by creating overlapping generations.

Pre-pupation behaviour of the aphid parasitoid Aphidius ervi (Haliday) and its consequences for pre-imaginal learning

NASA Astrophysics Data System (ADS)

Gutiérrez-Ibáñez, Cristián; Villagra, Cristian A.; Niemeyer, Hermann M.

2007-07-01

Olfactory learning may occur at different stages of insect ontogeny. In parasitoid wasps, it has been mostly shown at adult emergence, whilst it remains controversial at pre-imaginal stages. We followed larval growth of the parasitoid wasp, Aphidius ervi Haliday, inside the host aphid, Acyrthosiphom pisum Harris, and characterised in detail the behaviour of third instar larvae. We found that just before cocoon spinning begins, the third instar larva bites a hole through the ventral side of the mummified aphid exoskeleton. We then evaluated whether this period of exposure to the external environment represented a sensitive stage for olfactory learning. In our first experiment, the third instar larvae were allowed to spin their cocoon on the host plant ( Vicia faba L.) surface or on a plastic plate covering the portion of the host plant exposed to the ventral opening. Recently emerged adults of the first group showed a preference for plant volatiles in a glass Y-olfactometer, whereas no preference was found in adults of the second group. In a second experiment, during the period in which the aphid carcass remains open or is being sealed by cocoon spinning, third instar larvae were exposed for 24 h to either vanilla odours or water vapours as control. In this experiment, half of the parasitoid larvae were later excised from the mummy to avoid further exposure to vanilla. Adult parasitoids exposed to vanilla during the larval ventral opening of the mummy showed a significant preference for vanilla odours in the olfactometer, regardless of excision from the mummy. The larval behaviour described and the results of the manipulations performed are discussed as evidences for the acquisition of olfactory memory during the larval stage and its persistence through metamorphosis.

Differential response of surface temperature and atmospheric temperature to the biogeophysical effects of deforestation

NASA Astrophysics Data System (ADS)

Winckler, J.; Reick, C. H.; Lejeune, Q.; Pongratz, J.

2017-12-01

Deforestation influences temperature locally by changing the water, energy and momentum balance. While most observation-based studies and some modeling studies focused on the effects on surface temperature, other studies focused on the effects on near-surface air temperature. However, these two variables may respond differently to deforestation because changes in albedo and surface roughness may alter the land-atmosphere coupling and thus the vertical temperature distribution. Thus it is unclear whether it is possible to compare studies that assess the impacts of deforestation on these two different variables. Here, we analyze the biogeophysical effects of global-scale deforestation in the climate model MPI-ESM separately for surface temperature, 2m-air temperature and temperature the lowest atmospheric model layer. We investigate why the response of these variables differs by isolating the effects of only changing surface albedo and only changing surface roughness and by separating effects that are induced at the location of deforestation (local effects) from effects that are induced by advection and changes in circulation (nonlocal effects). Concerning surface temperature, we find that the local effects of deforestation lead to a global mean warming which is overcompensated by the nonlocal effects (up to 0.1K local warming versus -0.3K nonlocal cooling). The surface warming in the local effects is largely driven by the change in surface roughness while the cooling in the nonlocal effects is largely driven by the change in surface albedo. The nonlocal effects are largely consistent across surface temperature, 2m-air temperature, and the temperature of the lowest atmospheric layer. However, the local effects strongly differ across the three considered variables. The local effects are strong for surface temperature, but substantially weaker in the 2m-air temperature and largely absent in the lowest atmospheric layer. We conclude that studies focusing on the deforestation effects on surface temperature should not be compared to studies focusing on the effects on air temperature. While the local effects on surface temperature are useful for model evaluation, they might be less relevant for local adaptation and mitigation than previously thought because they might largely be absent in the atmosphere.

Causal Video Object Segmentation From Persistence of Occlusions

DTIC Science & Technology

2015-05-01

Precision, recall, and F-measure are reported on the ground truth anno - tations converted to binary masks. Note we cannot evaluate “number of...to lack of occlusions. References [1] P. Arbelaez, M. Maire, C. Fowlkes, and J . Malik. Con- tour detection and hierarchical image segmentation. TPAMI...X. Bai, J . Wang, D. Simons, and G. Sapiro. Video snapcut: robust video object cutout using localized classifiers. In ACM Transactions on Graphics

Aphid-encoded variability in susceptibility to a parasitoid

PubMed Central

2014-01-01

Background Many animals exhibit variation in resistance to specific natural enemies. Such variation may be encoded in their genomes or derived from infection with protective symbionts. The pea aphid, Acyrthosiphon pisum, for example, exhibits tremendous variation in susceptibility to a common natural enemy, the parasitic wasp Aphidius ervi. Pea aphids are often infected with the heritable bacterial symbiont, Hamiltonella defensa, which confers partial to complete resistance against this parasitoid depending on bacterial strain and associated bacteriophages. That previous studies found that pea aphids without H. defensa (or other symbionts) were generally susceptible to parasitism, together with observations of a limited encapsulation response, suggested that pea aphids largely rely on infection with H. defensa for protection against parasitoids. However, the limited number of uninfected clones previously examined, and our recent report of two symbiont-free resistant clones, led us to explicitly examine aphid-encoded variability in resistance to parasitoids. Results After rigorous screening for known and unknown symbionts, and microsatellite genotyping to confirm clonal identity, we conducted parasitism assays using fifteen clonal pea aphid lines. We recovered significant variability in aphid-encoded resistance, with variation levels comparable to that contributed by H. defensa. Because resistance can be costly, we also measured aphid longevity and cumulative fecundity of the most and least resistant aphid lines under permissive conditions, but found no trade-offs between higher resistance and these fitness parameters. Conclusions These results indicate that pea aphid resistance to A. ervi is more complex than previously appreciated, and that aphids employ multiple tactics to aid in their defense. While we did not detect a tradeoff, these may become apparent under stressful conditions or when resistant and susceptible aphids are in direct competition. Understanding sources and amounts of variation in resistance to natural enemies is necessary to understand the ecological and evolutionary dynamics of antagonistic interactions, such as the potential for coevolution, but also for the successful management of pest populations through biological control. PMID:24916045

Feasibility of Using Lasers and Infrared Heaters as UNREP Icing Countermeasures

DTIC Science & Technology

1989-12-29

water lance system out of commission, it is likely that the ship’s machine shop could fabricate the necessary parts for temporary repair. No such back...Sturbridge, MA 01566 High powered C02 laser systems and large inductrial machine tools. Coherent Laser Products (800) 527-3786 3210 Porter Drive P.O...friendly LASAG lasers are for user friendly applications The correct Laser Source for a particular in inoustrial apolications. Machining Task Mair

Comments on: Palaeoclimatic considerations of talus flatirons and aeolian deposits in Northern Fuerteventura volcanic island (Canary Islands, Spain). Mateo Gutiérrez-Elorza, Pedro Lucha, F.-Javier Gracia, Gloria Desir, CintaMarín, Nicole Petit-Maire

NASA Astrophysics Data System (ADS)

Faust, Dominik; Zöller, Ludwig; von Suchodoletz, Hans

2018-01-01

We would like to compliment the authors on this interesting description of some geomorphic elements found on the Canary Island of Fuerteventura. In addition, this paper is a wonderful review of some geomorphological work done in this part of the world, as based on selected papers and field work.

Tierra del Fuego, Argentina, South America

NASA Technical Reports Server (NTRS)

1991-01-01

The Mitre Peninsula is the easternmost tip of Tierra del Fuego, Argentina, (54.5S, 65.5W). Early winter snow can be seen on this south tip of the Andes Mountains. These same mountains continue underwater to Antarctica. The Strait of Magellan, separating the South American mainland from Tierra del Fuego is off the scene to the north and west, but the Strait of LeMaire, separating Tierra del Fuego from the Isla de los Estados can be seen.

Barks Essential Oil, Secondary Metabolites and Biological Activities of Four Organs of Tunisian Calligonum azel Maire.

PubMed

Bannour, Marwa; Aouadhi, Chedia; Khalfaoui, Houssem; Aschi-Smiti, Samira; Khadhri, Ayda

2016-11-01

This study is the first to investigate the chemical composition of barks essential oil (EO), secondary metabolites and biological activities of the MeOH and infusions extracts of seeds, leaves, barks and roots of Calligonum azel Maire (Polygonaceae) harvested from Tunisian desert. The gas chromatography/mass spectrometry (GC/MS) results showed the presence of fifty-four compounds in barks EO. The major components were: viridiflorol (14.6%), α-eudesmol (8.65%), trans-caryophyllene (6.72%), elemol (6.63%), β-eudesmol (6.21%). The obtained results showed that C. azel is a very rich plant in secondary metabolites. High contents in polyphenols, flavonoids and tannins were observed in both extracts of all studied organs. Significant differences were found between both extracts of the four organs. Thus, polyphenols and tannins were more abundant in leaves infusion extract, while, flavonoids showed a high level in barks extract. The antioxidant activity data demonstrated that all extracts showed strong antioxidant and radical scavenging activities. The MeOH extracts presented potential for antibacterial and antifungal activities against all tested microorganisms. The inhibition zones diameters and minimal inhibitrice concentration values were in the range of 9 - 15 mm and 2.5 - 20 μg/ml, respectively. This study demonstrated that C. azel can be regarded as an excellent plant source for natural antimicrobial agents. © 2016 Wiley-VHCA AG, Zurich, Switzerland.

Bacteriophages encode factors required for protection in a symbiotic mutualism.

PubMed

Oliver, Kerry M; Degnan, Patrick H; Hunter, Martha S; Moran, Nancy A

2009-08-21

Bacteriophages are known to carry key virulence factors for pathogenic bacteria, but their roles in symbiotic bacteria are less well understood. The heritable symbiont Hamiltonella defensa protects the aphid Acyrthosiphon pisum from attack by the parasitoid Aphidius ervi by killing developing wasp larvae. In a controlled genetic background, we show that a toxin-encoding bacteriophage is required to produce the protective phenotype. Phage loss occurs repeatedly in laboratory-held H. defensa-infected aphid clonal lines, resulting in increased susceptibility to parasitism in each instance. Our results show that these mobile genetic elements can endow a bacterial symbiont with benefits that extend to the animal host. Thus, phages vector ecologically important traits, such as defense against parasitoids, within and among symbiont and animal host lineages.

Dominant gene for rust resistance in pearl millet

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hanna, W.W.; Wells, H.D.; Burton, G.W.

1985-01-01

Rust (Puccinia substriata var. indica) resistance was discovered in three Pennisetum americanum (L.) Leeke subspecies monodii (Maire) Brunken accessions from Senegal. Resistant plant were free of rust, although the bottom one or two leaves of some plants did develop a brown discoloration without pustules. Resistance was controlled by a dominant gene assigned the gene symbol Rr1. Backcrossing has been effective in transferring resistance from the wild grassy, monodii to cultivated pearl millet. The Rr1 gene should be useful in the production of rust resistant pearl millet hybrids and cultivars. 6 references, 1 table.

Chemotherapy of Rodent Malaria. Evaluation of Drug Action against Normal and Resistant Strains including Exo-Erythrocytic Stages.

DTIC Science & Technology

1979-09-01

DEPTI OF PARAS, PI[’ nmmhhhmhhhhhuo MENOhMNEEhol I L25 " . L 6I.I MICROCOP °Y RESOLUTION TEST CHART NATIOAL BU KA OF STA AROS-19632 L...WItAIR compounds have been examined since the last Report issued in December 1978 for blood schizontocidal activity, and another 21 have been examined as...of Anopheles. 3. CHEMOTHERAPY STUDIES 3.1 Blood schizontocides The mair’ ;-erest this year has been to examine the activity of V7 compounds in the

Mobility of 232Th and 210Po in red mud.

PubMed

Hegedűs, Miklós; Tóth-Bodrogi, Edit; Jónás, Jácint; Somlai, János; Kovács, Tibor

2018-04-01

The valorization of industrial by-products such as red mud became a tempting opportunity, but the understanding of the risks involved is required for the safe utilization of these products. One of the risks involved are the elevated levels of radionuclides (in the 100-1300 Bq/kg range for both the 238 U and 232  Th decay chains, but usually lower than 1000 Bq/kg, which is the recommended limit for excemption or clearance according to the EU BSS released in 2013) in red mud that can affect human health. There is no satisfactory answer for the utilization of red mud; the main current solution is still almost exclusively disposal into a landfill. For the safe utilization and deposition of red mud, it is important to be able to assess the leaching behaviour of radionuclides. Because there is no commonly accepted measurement protocol for testing the leaching of radionuclides in the EU a combined measurement protocol was made and tested based on heavy metal leaching methods. The leaching features of red mud were studied by methods compliant with the MSZ-21470-50 Hungarian standard, the CEN/TS 14429 standard and the Tessier sequential extraction method for 232 Th and 210 Po. The leached solutions were taken to radiochemical separation followed by spontaneous deposition for Po and electrodeposition for Th. The 332 ± 33 Bq/kg 232 Th content was minimally mobile, 1% became available for distilled water 1% and 6% for Lakanen-Erviö solution; the Tessier extraction showed minimal mobility in the first four steps, while more than 85% remained in the residue. The 210 Po measurements had a severe disturbing effect in many cases, probably due to large amounts of iron present in the red mud, from the 310 ± 12 Bq/kg by aqua regia digestion, distilled water mobilized 23%, while Lakanen-Erviö solution mobilized ∼13%. The proposed protocol is suitable for the analysis of Th and Po leaching behaviour. Copyright © 2018 Elsevier Ltd. All rights reserved.

Antimicrobial photodynamic therapy of S. mutans biofilms attached to relevant dental materials.

PubMed

Zoccolillo, Michelle L; Rogers, Stephen C; Mang, Thomas S

2016-12-01

Antimicrobial Photodynamic therapy (aPDT) has demonstrated efficacy in situations where conventional antibiotic therapies can be challenged such as biofilms, gram-negative bacteria, and antimicrobial resistant organisms. Surface characteristics can affect biofilm adherence and integrity and so may modify the effectiveness of aPDT. This study investigates the killing efficacy of aPDT on S. mutans biofilms grown on relevant dental substrata, examining the killing efficacy and specifically the effects of aPDT on the biofilm matrix architecture. S. mutans (NCTC 10449) was grown in 48 hours biofilms on different substrata, specifically glass, titanium, and denture acrylic. During aPDT assays, the biofilms were treated with a purpurin based sensitizer ([25 ug/ml] in DMSO) for 30 minutes, then exposed to a 664 nm diode laser at light doses of 15, 30, and 45 J/cm 2 . Colony forming unit assays were performed to determine survival following treatment. Controls for comparison in survival assays consisted of (No light/No PS; No light/PS; and No light/DMSO). MAIR-IR spectroscopy analysis was performed to investigate aPDT effects on biofilm composition before and after jet impingement. Survival was greatly reduced in the biofilm cultures following the aPDT assays. All light doses achieved a greater then 3-log inactivation on 48 hours biofilms grown on polished denture acrylic. The higher light doses (45 and 30 J) achieved greater than 3-log inactivation in 48 hours biofilms grown on glass. The higher light doses (30 and 45 J/cm 2 ) produced a 2-log inactivation in 48 hours biofilms grown on titanium. Multiple attenuated internal reflection infrared (MAIR-IR) spectroscopy data demonstrates enhanced loss of exopolysaccharide (EPS) and Amide in the aPDT treated biofilms following jet impingement. Antimicrobial PDT experiments using a purpurin based sensitizer and laser light doses of 15, 30, and 45 J/cm 2 , against S. mutans biofilm grown on different surfaces, show the effectiveness of this therapy. In CFU survival assays, a dose response to the laser is evident. While considerable disinfection was achieved on all surfaces compared to the controls, not all surfaces could be disinfected equally. MAIR-IR spectroscopy showed that aPDT groups lost more EPS and Amide versus controls, suggesting aPDT induced biofilm embrittlement, which was revealed by jet impingement. With demonstrated efficacy against various microbes and on different substrata, antimicrobial aPDT shows potential for clinical application in biofilm-mediated diseases such as peri-implantitis and periodontitis. Lasers Surg. Med. 48:995-1005, 2016. © 2016 Wiley Periodicals, Inc. © 2016 Wiley Periodicals, Inc.

The heuristic value of redundancy models of aging.

PubMed

Boonekamp, Jelle J; Briga, Michael; Verhulst, Simon

2015-11-01

Molecular studies of aging aim to unravel the cause(s) of aging bottom-up, but linking these mechanisms to organismal level processes remains a challenge. We propose that complementary top-down data-directed modelling of organismal level empirical findings may contribute to developing these links. To this end, we explore the heuristic value of redundancy models of aging to develop a deeper insight into the mechanisms causing variation in senescence and lifespan. We start by showing (i) how different redundancy model parameters affect projected aging and mortality, and (ii) how variation in redundancy model parameters relates to variation in parameters of the Gompertz equation. Lifestyle changes or medical interventions during life can modify mortality rate, and we investigate (iii) how interventions that change specific redundancy parameters within the model affect subsequent mortality and actuarial senescence. Lastly, as an example of data-directed modelling and the insights that can be gained from this, (iv) we fit a redundancy model to mortality patterns observed by Mair et al. (2003; Science 301: 1731-1733) in Drosophila that were subjected to dietary restriction and temperature manipulations. Mair et al. found that dietary restriction instantaneously reduced mortality rate without affecting aging, while temperature manipulations had more transient effects on mortality rate and did affect aging. We show that after adjusting model parameters the redundancy model describes both effects well, and a comparison of the parameter values yields a deeper insight in the mechanisms causing these contrasting effects. We see replacement of the redundancy model parameters by more detailed sub-models of these parameters as a next step in linking demographic patterns to underlying molecular mechanisms. Copyright © 2015 Elsevier Inc. All rights reserved.

Endotoxin removal by radio frequency gas plasma (glow discharge)

NASA Astrophysics Data System (ADS)

Poon, Angela

2011-12-01

Contaminants remaining on implantable medical devices, even following sterilization, include dangerous fever-causing residues of the outer lipopolysaccharide-rich membranes of Gram-negative bacteria such as the common gut microorganism E. coli. The conventional method for endotoxin removal is by Food & Drug Administration (FDA)-recommended dry-heat depyrogenation at 250°C for at least 45 minutes, an excessively time-consuming high-temperature technique not suitable for low-melting or heat-distortable biomaterials. This investigation evaluated the mechanism by which E. coli endotoxin contamination can be eliminated from surfaces during ambient temperature single 3-minute to cumulative 15-minute exposures to radio-frequency glow discharge (RFGD)-generated residual room air plasmas activated at 0.1-0.2 torr in a 35MHz electrodeless chamber. The main analytical technique for retained pyrogenic bio-activity was the Kinetic Chromogenic Limulus Amebocyte Lysate (LAL) Assay, sufficiently sensitive to document compliance with FDA-required Endotoxin Unit (EU) titers less than 20 EU per medical device by optical detection of enzymatic color development corresponding to < 0.5 EU/ml in sterile water extracts of each device. The main analytical technique for identification of chemical compositions, amounts, and changes during sequential reference Endotoxin additions and subsequent RFGD-treatment removals from infrared (IR)-transparent germanium (Ge) prisms was Multiple Attenuated Internal Reflection (MAIR) infrared spectroscopy sensitive to even monolayer amounts of retained bio-contaminant. KimaxRTM 60 mm x 15 mm and 50mm x 15mm laboratory glass dishes and germanium internal reflection prisms were inoculated with E. coli bacterial endotoxin water suspensions at increments of 0.005, 0.05, 0.5, and 5 EU, and characterized by MAIR-IR spectroscopy of the dried residues on the Ge prisms and LAL Assay of sterile water extracts from both glass and Ge specimens. The Ge prism MAIR-IR measurements were repeated after employing 3-minute RFGD treatments sequentially for more than 10 cycles to observe removal of deposited matter that correlated with diminished EU titers. The results showed that 5 cycles, for a total exposure time of 15 minutes to low-temperature gas plasma, was sufficient to reduce endotoxin titers to below 0.05 EU/ml, and correlated with concurrent reduction of major endotoxin reference standard absorption bands at 3391 cm-1, 2887 cm-1, 1646 cm -1 1342 cm-1, and 1103 cm-1 to less than 0.05 Absorbance Units. Band depletion varied from 15% to 40% per 3-minute cycle of RFGD exposure, based on peak-to-peak analyses. In some cases, 100% of all applied biomass was removed within 5 sequential 3-minute RFGD cycles. The lipid ester absorption band expected at 1725 cm-1 was not detectable until after the first RFGD cycle, suggesting an unmasking of the actual bacterial endotoxin membrane induced within the gas plasma environment. Future work must determine the applicability of this low-temperature, quick depyrogenation process to medical devices of more complicated geometry than the flat surfaces tested here.

Does sex-biased dispersal account for the lack of geographic and host-associated differentiation in introduced populations of an aphid parasitoid?

PubMed Central

Zepeda-Paulo, Francisca; Lavandero, Blas; Mahéo, Frédérique; Dion, Emilie; Outreman, Yannick; Simon, Jean-Christophe; Figueroa, Christian C

2015-01-01

Host recognition and use in female parasitoids strongly relies on host fidelity, a plastic behavior which can significantly restrict the host preferences of parasitoids, thus reducing the gene flow between parasitoid populations attacking different insect hosts. However, the effect of migrant males on the genetic differentiation of populations has been frequently ignored in parasitoids, despite its known impact on gene flow between populations. Hence, we studied the extent of gene flow mediated by female and male parasitoids by assessing sibship relationships among parasitoids within and between populations, and its impact on geographic and host-associated differentiation in the aphid parasitoid Aphidius ervi. We report evidences of a high gene flow among parasitoid populations on different aphid hosts and geographic locations. The high gene flow among parasitoid populations was found to be largely male mediated, suggested by significant differences in the distribution of full-sib and paternal half-sib dyads of parasitoid populations. PMID:26078852

Climate Change Studies over Bangalore using Multi-source Remote Sensing Data and GIS

NASA Astrophysics Data System (ADS)

B, S.; Gouda, K. C.; Laxmikantha, B. P.; Bhat, N.

2014-12-01

Urbanization is a form of metropolitan growth that is a response to often bewildering sets of economic, social, and political forces and to the physical geography of an area. Some of the causes of the sprawl include - population growth, economy, patterns of infrastructure initiatives like the construction of roads and the provision of infrastructure using public money encouraging development. The direct implication of such urban sprawl is the change in land use and land cover of the region. In this study the long term climate data from multiple sources like NCEP reanalysis, IMD observations and various satellite derived products from MAIRS, IMD, ERSL and TRMM are considered and analyzed using the developed algorithms for the better understanding of the variability in the climate parameters over Bangalore. These products are further mathematically analyzed to arrive at desired results by extracting land surface temperature (LST), Potential evapo-transmission (PET), Rainfall, Humidity etc. Various satellites products are derived from NASA (National Aeronautics Space Agency), Indian meteorological satellites and global satellites are helpful in massive study of urban issues at global and regional scale. Climate change analysis is well studied by using either single source data such as Temperature or Rainfall from IMD (Indian Meteorological Department) or combined data products available as in case of MAIRS (Monsoon Asia Integrated Regional Scale) program to get rainfall at regional scale. Finally all the above said parameters are normalized and analyzed with the help of various open source available software's for pre and post processing our requirements to obtain desired results. A sample of analysis i.e. the Inter annual variability of annual averaged Temperature over Bangalore is presented in figure 1, which clearly shows the rising trend of the temperature (0.06oC/year). Also the Land use and land cover (LULC) analysis over Bangalore, Day light hours from satellite derived products are analyzed and the correlation of climate parameters with LULC are presented.

Homestead AFB, Florida Revised Uniform Summary of Surface Weather Observations (RUSSWO). Parts A-F.

DTIC Science & Technology

1984-09-01

STYATO* StAK) NAAM YEAft YTIL 0’ Ch -LV P’QECXP1TATImN IN 4 04 JTl A. FES MAIR APR MAY JUN JL AUOG SEP DEC M4v ALI *3 -02 5.13 1 -.64 (WA 00S 844- 93q 87...068 .074 .082 *093 .. 95 ) _ o1*TOTAL ONS UL 2l3 i1.J 300 ]1 310 10{ 3L0 J D .3110 Ch ,13 ..04710. 026:: 9.985 19.985 29.92529o952 9.999 !9.975 !9.916...2l -i- - ----------------------------------------------------------- L _ .L L 1 O G ZA - CH L TCL CEILING VERSUS VISIBILITY .EAr V:E SF7 VI7f /MIAC

Antimicrobial photodynamic therapy (aPDT) induction of biofilm matrix architectural and bioadhesive modifications.

PubMed

Mang, Thomas; Rogers, Stephen; Keinan, David; Honma, Kiyonobu; Baier, Robert

2016-03-01

Dental implants are commonly used today for the treatment of partially and fully edentulous patients. Despite the high success rate they are not resistant to complications and failure due to a variety of problems including peri-implantitis or peri-mucositis due to bacterial biofilm formation on the implant surface. The use of non-surgical and surgical treatment procedure to promote healing in cases with peri-implantitis have limited efficacy. Here we studied the ability of photodynamic therapy to destroy a known bacterial pathogen and the extracellular matrix architecture of biofilm attached to titanium plates and germanium prisms. Titanium plates or germanium prisms were incubated for 24h with Fusobacterium nucleatum a fusiform, gram-negative bacterium was used to enable biofilm formation. Photodynamic therapy was carried out by incubating the biofilm samples on each substrata with porfimer sodium. Treatment was carried out using a diode laser at 630nm, 150mW/cm(2) for light doses ranging from 25-100J/cm(2). Evaluation of killing efficacy was done by counting colony forming units compared to controls. Multiple attenuated internal reflection-infrared spectroscopy (MAIR-IR) and SEM were used to analyze the samples pre and post PDT for validation. F. nucleatum was significantly reduced in a dose dependent manner by treatment with PDT. Changes in biofilm components and strength of bioadhesion were examined with MAIR-IR following jet impingement using calibrated water jets. SEM demonstrates significant morphological alterations in the bacteria, consistent with damage associated with exposure to reactive oxygen species. The results are indicative that aPDT is a method that can be used to eradicate micro-organisms associated with biofilm in peri-implantitis on relevant substrata. Data shows that the slime layer of the biofilm is removed and that further methods need to be employed to completely remove weakened or destroyed biofilm matrix components. Reactive oxygen species (ROS) mediated oxidative damage results in morphologic changes as a consequence of changes in cell membrane integrity. Copyright © 2015 Elsevier B.V. All rights reserved.

Surface proton transport of fully protonated poly(aspartic acid) thin films on quartz substrates

NASA Astrophysics Data System (ADS)

Nagao, Yuki; Kubo, Takahiro

2014-12-01

Thin film structure and the proton transport property of fully protonated poly(aspartic acid) (P-Asp100) have been investigated. An earlier study assessed partially protonated poly(aspartic acid), highly oriented thin film structure and enhancement of the internal proton transport. In this study of P-Asp100, IR p-polarized multiple-angle incidence resolution (P-MAIR) spectra were measured to investigate the thin film structure. The obtained thin films, with thicknesses of 120-670 nm, had no oriented structure. Relative humidity dependence of the resistance, proton conductivity, and normalized resistance were examined to ascertain the proton transport property of P-Asp100 thin films. The obtained data showed that the proton transport of P-Asp100 thin films might occur on the surface, not inside of the thin film. This phenomenon might be related with the proton transport of the biological system.

Strive toward data harmony of multi sensor aerosol data - Tribute to Dr. Gregory Leptoukh

NASA Astrophysics Data System (ADS)

Wei, J. C.; Lynnes, C.; Kempler, S. J.; Shen, S.

2012-12-01

The Goddard Earth Sciences Data and Information Services Center (GES DISC) has been involved with aerosol data synergy activities and projects over recent years, led by Dr. Gregory Leptoukh. His particular interests centered on issues related to comparison and harmonization of several aspects of aerosol data, such as data quality, bias adjustment, and data provenance. A thorough understanding of these issues is needed to guide multi-sensor data usage and avoid apples-to-oranges inter-comparison and data fusion. In this talk, I will highlight these activities/projects. These would include the tools developed, but also the projects that address specific user needs and innovative services, such as GIOVANNI-MAPSS, AeroStat, NEESPI, MAIRS, ATDD, MDSA, LTA-SWDB, etc. I will also discuss preliminary results from new projects and future goals that build on the ground breaking work, left by Dr. Leptoukh.

A robust method to screen detergents for membrane protein stabilization, revisited.

PubMed

Champeil, Philippe; Orlowski, Stéphane; Babin, Simon; Lund, Sten; le Maire, Marc; Møller, Jesper; Lenoir, Guillaume; Montigny, Cédric

2016-10-15

This report is a follow up of our previous paper (Lund, Orlowski, de Foresta, Champeil, le Maire and Møller (1989), J Biol Chem 264:4907-4915) showing that solubilization in detergent of a membrane protein may interfere with its long-term stability, and proposing a protocol to reveal the kinetics of such irreversible inactivation. We here clarify the fact that when various detergents are tested for their effects, special attention has of course to be paid to their critical micelle concentration. We also investigate the effects of a few more detergents, some of which have been recently advertised in the literature, and emphasize the role of lipids together with detergents. Among these detergents, lauryl maltose neopentyl glycol (LMNG) exerts a remarkable ability, even higher than that of β-dodecylmaltoside (DDM), to protect our test enzyme, the paradigmatic P-type ATPase SERCA1a from sarcoplasmic reticulum. Performing such experiments for one's favourite protein probably remains useful in pre-screening assays testing various detergents. Copyright © 2016 Elsevier Inc. All rights reserved.

Exploring Remote Sensing Products Online with Giovanni for Studying Urbanization

NASA Technical Reports Server (NTRS)

Shen, Suhung; Leptoukh, Gregory G.; Gerasimov, Irina; Kempler, Steve

2012-01-01

Recently, a Large amount of MODIS land products at multi-spatial resolutions have been integrated into the online system, Giovanni, to support studies on land cover and land use changes focused on Northern Eurasia and Monsoon Asia regions. Giovanni (Goddard Interactive Online Visualization ANd aNalysis Infrastructure) is a Web-based application developed by the NASA Goddard Earth Sciences Data and Information Services Center (GES-DISC) providing a simple and intuitive way to visualize, analyze, and access Earth science remotely-sensed and modeled data. The customized Giovanni Web portals (Giovanni-NEESPI and Giovanni-MAIRS) are created to integrate land, atmospheric, cryospheric, and social products, that enable researchers to do quick exploration and basic analyses of land surface changes and their relationships to climate at global and regional scales. This presentation documents MODIS land surface products in Giovanni system. As examples, images and statistical analysis results on land surface and local climate changes associated with urbanization over Yangtze River Delta region, China, using data in Giovanni are shown.

Shallot Aphids, Myzus ascalonicus, in Strawberry: Biocontrol Potential of Three Predators and Three Parasitoids

PubMed Central

Enkegaard, Annie; Sigsgaard, Lene; Kristensen, Kristian

2013-01-01

The parasitization capacity of 3 parasitoids and the predation capacity of 3 predators towards the shallot aphid, Myzus ascalonicus Doncaster (Homoptera: Aphididae), on strawberry, Fragaria x ananassa Duchesne (Rosales: Rosaceae) cv. Honeoye, were examined in laboratory experiments. In Petri dish assays, both Aphidius colemani Viereck (Hymenoptera: Aphidiidae) and A. ervi Haliday readily stung shallot aphids, with no significant difference in stinging frequency between the two species. A. ervi induced a significantly higher mortality (79.0 ± 7.2%) in terms of stung aphids compared with A. colemani (55.3 ± 4.1%); however, only a minor fraction (2.7 ± 1.8% and 7.1 ± 3.1%, respectively) of the killed aphids resulted in formation of mummies, presumably due to a physiological response to parasitism. The low percentage of mummification precludes the use of either Aphidius species in anything but inundative biocontrol. In similar set-ups, Aphelinus abdominalis (Dalman) (Hymenoptera: Aphelinidae) killed almost half (49.6 ± 5.3%) of the exposed aphids through host feeding. In addition, 23.2 ± 7.3% of non-host-fed aphids developed into mummified aphids, and 38.1 ± 13.2% of non-host-fed aphids died from other parasitoid-induced causes. However, the host feeding rate was reduced to only 1.2 ± 0.8%, and no significant parasitization mortality was observed on strawberry plants, suggesting that host plants interfered with A. abdominalis activity. This parasitoid does not, therefore, seem to be suited to either inoculative or inundative biocontrol of shallot aphids in strawberry. The three predators studied were the green lacewing, Chrysoperla carnea Steph. (Neuroptera: Chrysopidae), the two-spotted lady beetle, Adalia bipunctata L. (Coleoptera: Coccinellidae), and the gall midge Aphidoletes aphidimyza (Rondani) (Diptera: Cecidomyiidae). Third instars of all 3 predators readily preyed upon the shallot aphid in Petri dish set-ups with significant differences in daily predation (34.62 ± 3.45, 25.25 ± 3.18, and 13.34 ± 1.45, respectively). Further studies on A. bipunctata revealed that the larvae maintained their daily predation capacity (32.0 ± 6.3) on strawberry plants. About 60% of already ovipositing A. bipunctata refrained from laying any eggs on the first day after transfer to set-ups with combinations of shallot or peach-potato aphids, Myzus persicae (Sulzer) (Homoptera: Aphididae), and strawberry or sweet pepper leaves. The aphid species and the plant species did not, however, have a significant influence on the number of females laying eggs, the average number of eggs laid during the first day being 6.37±1.28 per female. Adult lady beetles had a significant preference for odor from controls without plants over odors from uninfested strawberry or pepper plants, but they showed no preference for either of the plant species, whether infested with aphids or not. The predation capacity of A. bipunctata on shallot aphids holds promise for its use in inundative biocontrol, and the results on egg laying cues suggests that inoculative biocontrol may be possible, although further studies will be needed for a complete evaluation. PMID:24224712

Deriving leaf chlorophyll content of green-leafy vegetables from hyperspectral reflectance

NASA Astrophysics Data System (ADS)

Xue, Lihong; Yang, Linzhang

Different nitrogen (N) treatments of four common green-leafy vegetable varieties with different leaf color: lettuce ( Lactuca sativa L. var. crispa L.) with yellow green leaves, pakchoi ( Brassica chinensis L.) var. aijiaohuang in Chinese (AJH) with middle green leaves, spinach ( Spinacia oleracea L.) with green leaves and pakchoi ( B. chinensis L.) var. shanghaiqing in Chinese (SHQ) with dark green leaves, were carried out to achieve a wide range of chlorophyll content. The relationship of vegetable leaf hyperspectral response to its chlorophyll content was examined in this study. Almost all reported successful leaf chlorophyll indices in the literature were evaluated for their ability to predict the chlorophyll content in vegetable leaves. Some new indices based on the first derivative curve were also developed, and compared with the chlorophyll indices published. The results showed that most of the indices showed a strong relation with leaf chlorophyll content. In general, modified indices with the blue or near red edge wavelength performed better than their simple counterpart without modification, ratio indices performed a little better than normalized indices when chlorophyll expressed on area basis and reversed when chlorophyll expressed on fresh weight basis. A normalized derivative difference ratio (BND: (D722-D700)/(D722+D700) calibrated by Maire et al. [Maire, G., Francois, C., Dufrene, E., 2004. Towards universal broad leaf chlorophyll indices using PROSPECT simulated database and hyperspectral reflectance measurements. Remote Sensing of Environment 89 (1), 1-28]) gave the best results among all published indices in this study (RMSE=22.1 mg m -2), then the mSR-like indices with the RMSE between 22.6 and 23.0 mg m -2. The new indices EBAR (ratio of the area of red and blue, ∑ dRE/∑ dB), EBFN (normalized difference of the amplitude of red and blue, (dRE-dB)/(dRE+dB)) and EBAN (normalized difference of the area of red and blue, (∑ dRE-∑ dB)/(∑ dRE+∑ dB)) calculated with the derivatives also showed a good performance with the RMSE of 23.3, 24.15 and 24.33 mg m -2, respectively. The study suggests that spectral reflectance measurements hold promise for the assessment of chlorophyll content at the leaf level for green-leafy vegetables. Further investigation is needed to evaluate the effectiveness of such techniques on other vegetable varieties or at the canopy level.

Chemically mediated intraguild predator avoidance by aphid parasitoids: interspecific variability in sensitivity to semiochemical trails of ladybird predators.

PubMed

Nakashima, Yoshitaka; Birkett, Michael A; Pye, Barry J; Powell, Wilf

2006-09-01

The avoidance responses of aphid parasitoids with varying host ranges (Aphidius eadyi, Aphidius ervi, and Praon volucre) to chemical trails deposited by intraguild predatory ladybirds, Coccinella septempunctata and Adalia bipunctata, were investigated. Females of all three parasitoid species avoided leaves previously visited by C. septempunctata or A. bipunctata adults. The avoidance responses shown by the two Aphidius species were stronger to trails of C. septempunctata than to those of A. bipunctata. However, P. volucre avoided trails of both ladybird species to a similar degree. Dose responses of these three parasitoid species to the hydrocarbons n-tricosane (C23H48), n-pentacosane (C25H52), and n-heptacosane (C27H56), which are components of the trails of both C. septempunctata and A. bipunctata, were evaluated. Dual-choice bioassays indicated the following: (1) A. eadyi showed more sensitive avoidance responses to n-tricosane than did the other two parasitoid species, (2) all three species showed similar responses to n-pentacosane across a range of doses, and (3) only P. volucre showed avoidance responses to n-heptacosane. Quantitative analyses of each hydrocarbon in the trails of the two ladybird species showed that n-pentacosane and n-heptacosane occur in significantly greater amounts in C. septempunctata trails than in those of A. bipunctata. The trails of the two species also differ qualitatively in the other hydrocarbons present.

Antiviral activity of some Tunisian medicinal plants against Herpes simplex virus type 1.

PubMed

Sassi, A Ben; Harzallah-Skhiri, F; Bourgougnon, N; Aouni, M

2008-01-10

Fifteen species of Tunisian traditional medicinal plants, belonging to 10 families, were selected for this study. They were Inula viscosa (L.) Ait and Reichardia tingitana (L.) Roth ssp. discolor (Pom.) Batt. (Asteraceae), Mesembryanthemum cristallinum L. and M. nodiflorum L. (Aizoaceae), Arthrocnemum indicum (Willd.) Moq., Atriplex inflata Muell., A. parvifolia Lowe var. ifiniensis (Caball) Maire, and Salicornia fruticosa L. (Chenopodiaceae), Cistus monspeliensis L. (Cistaceae), Juniperus phoenicea L. (Cupressaceae), Erica multiflora L. (Ericaceae), Frankenia pulverulenta L. (Frankeniaceae), Hypericum crispum L. (Hypericaceae), Plantago coronopus L. ssp. eu-coronopus Pilger var. vulgaris G.G. (Plantaginaceae) and Zygophyllum album L. (Zygophyllaceae). Fifty extracts prepared from those plants were screened in order to assay their antiviral activity against Herpes simplex virus type 1 (HSV-1), using neutral red incorporation. Extracts from eight plants among these 15 showed some degree of antiviral activity, while the methanolic extract of E. multiflora was highly active with EC(50) of 132.6 microg mL(-1). These results corroborate that medicinal plants from Tunisia can be a rich source of potential antiviral compounds.

Visualization and Analysis of Multi-scale Land Surface Products via Giovanni Portals

NASA Technical Reports Server (NTRS)

Shen, Suhung; Kempler, Steven J.; Gerasimov, Irina V.

2013-01-01

Large volumes of MODIS land data products at multiple spatial resolutions have been integrated into the Giovanni online analysis system to support studies on land cover and land use changes,focused on the Northern Eurasia and Monsoon Asia regions through the LCLUC program. Giovanni (Goddard Interactive Online Visualization ANd aNalysis Infrastructure) is a Web-based application developed by the NASA Goddard Earth Sciences Data and Information Services Center (GES DISC), providing a simple and intuitive way to visualize, analyze, and access Earth science remotely-sensed and modeled data.Customized Giovanni Web portals (Giovanni-NEESPI andGiovanni-MAIRS) have been created to integrate land, atmospheric,cryospheric, and societal products, enabling researchers to do quick exploration and basic analyses of land surface changes, and their relationships to climate, at global and regional scales. This presentation shows a sample Giovanni portal page, lists selected data products in the system, and illustrates potential analyses with imagesand time-series at global and regional scales, focusing on climatology and anomaly analysis. More information is available at the GES DISCMAIRS data support project portal: http:disc.sci.gsfc.nasa.govmairs.

VizieR Online Data Catalog: JCMT Gould Belt Survey: Southern Orion A (Mairs+, 2016)

NASA Astrophysics Data System (ADS)

Mairs, S.; Johnstone, D.; Kirk, H.; Buckle, J.; Berry, D. S.; Broekhoven-Fiene, H.; Currie, M. J.; Fich, M.; Graves, S.; Hatchell, J.; Jenness, T.; Mottram, J. C.; Nutter, D.; Pattle, K.; Pineda, J. E.; Salji, C.; di, Francesco J.; Hogerheijde, M. R.; Ward-Thompson, D.; Bastien, P.; Bresnahan, D.; Butner, H.; Chen, M.; Chrysostomou, A.; Coude, S.; Davis, C. J.; Drabek-Maunder, E.; Duarte-Cabral, A.; Fiege, J.; Friberg, P.; Friesen, R.; Fuller, G. A.; Greaves, J.; Gregson, J.; Holland, W.; Joncas, G.; Kirk, J. M.; Knee, L. B. G.; Marsh, K.; Matthews, B. C.; Moriarty-Schieven, G.; Mowat, C.; Rawlings, J.; Richer, J.; Robertson, D.; Rosolowsky, E.; Rumble, D.; Sadavoy, S.; Thomas, H.; Tothill, N.; Viti, S.; White, G. J.; Wouterloot, J.; Yates, J.; Zhu, M.

2017-11-01

The observations presented throughout this paper were performed using the SCUBA-2 instrument (Holland et al., 2013MNRAS.430.2513H) as part of the JCMT Gould Belt Survey (Ward-Thompson et al., 2007PASP..119..855W). This instrument has provided continuum coverage at both 850um and 450um simultaneously at effective beam sizes of 14.1-arcsec and 9.6-arcsec, respectively (Dempsey et al., 2013MNRAS.430.2534D). In this work, we present Southern Orion A in both wavelengths, but focus mainly on the 850um data for analysis. All of the observations were taken in the PONG1800 mapping mode, yielding circular maps ('PONGs') of 0.5° in diameter. There are 17 0.5° subregions across the Orion A Molecular Cloud, 13 of which cover Southern Orion A. These locations were individually observed four to six times throughout 2012 February to 2015 January, and were then co-added (once co-added, these structures are referred to as 'tiles') and mosaicked to form the final map. (3 data files).

Analysis of Vegetation Index Variations and the Asian Monsoon Climate

NASA Technical Reports Server (NTRS)

Shen, Sunhung; Leptoukh, Gregory G.; Gerasimov, Irina

2012-01-01

Vegetation growth depends on local climate. Significant anthropogenic land cover and land use change activities over Asia have changed vegetation distribution as well. On the other hand, vegetation is one of the important land surface variables that influence the Asian Monsoon variability through controlling atmospheric energy and water vapor conditions. In this presentation, the mean and variations of vegetation index of last decade at regional scale resolution (5km and higher) from MODIS have been analyzed. Results indicate that the vegetation index has been reduced significantly during last decade over fast urbanization areas in east China, such as Yangtze River Delta, where local surface temperatures were increased significantly in term of urban heat Island. The relationship between vegetation Index and climate (surface temperature, precipitation) over a grassland in northern Asia and over a woody savannas in southeast Asia are studied. In supporting Monsoon Asian Integrated Regional Study (MAIRS) program, the data in this study have been integrated into Giovanni, the online visualization and analysis system at NASA GES DISC. Most images in this presentation are generated from Giovanni system.

Activation of defence in sweet pepper, Capsicum annum, by cis-jasmone, and its impact on aphid and aphid parasitoid behaviour.

PubMed

Dewhirst, Sarah Y; Birkett, Michael A; Loza-Reyes, Elisa; Martin, Janet L; Pye, Barry J; Smart, Lesley E; Hardie, Jim; Pickett, John A

2012-10-01

Two important pests of the sweet pepper, Capsicum annuum, are the peach potato aphid, Myzus persicae, and the glasshouse potato aphid, Aulacorthum solani. Current aphid control measures include the use of biological control agents, i.e., parasitic wasps, but with varying levels of success. One option to increase parasitoid efficiency is to activate plant defence. Therefore, sweet pepper plants were treated with the naturally occurring plant defence activator cis-jasmone, and its impact upon the behaviour and development of aphids and aphid parasitoids was investigated. Growth rate studies revealed that the intrinsic rate of population increase of A. solani and M. persicae on sweet pepper plants treated with cis-jasmone (cJSP) was not affected compared with untreated plants (UnSP), but the positive behavioural response of alate M. persicae towards the volatile organic compounds (VOCs) from UnSP was eliminated by cis-jasmone treatment 48 h previously (cJSP48). In addition, the aphid parasitoid Aphidius ervi preferred VOCs from cJSP48 compared with UnSP, and a significant increase in foraging time was also observed on cJSP. Analysis of VOCs collected from cJSP48 revealed differences compared with UnSP. There is evidence that treatment with cis-jasmone has the potential to improve protection of sweet pepper against insect pests. © Crown copyright 2012. Reproduced with permission of Her Majesty's Stationery Office. Published by John Wiley & Sons, Ltd.

Vortex based information storage in Bose-Einstein condensates

NASA Astrophysics Data System (ADS)

Dutton, Zachary; Ruostekoski, Janne

2004-05-01

Recent demonstrations of coherent optical storage in atomic clouds [1,2] have opened up new possibilities for both classical and quantum information storage. In parallel, there have been advances in the generation of Laguerre-Gaussian (LG) modes with angular momentum (optical vortices)[3] and applications of these modes to quantum information architectures based on a alphabets larger than the traditional two-state systems. Here we theoretically consider the storage of such LG modes in atomic Rb-87 Bose-Einstein condensates (BECs). An LG mode writes its vortex phase pattern into a two-component BEC vortex state. The angular momentum information can then be stored in the BEC and then efficiently read back onto the optical field by switching a control field on. We study the fidelity of the writing, storage, and read-out processes. We also consider applying this method to to the transfer of more complicated states, such as two-component vortex lattices, between two spatially distinct BECs. 1. C. Liu, Z. Dutton, C.H. Behroozi, and L.V. Hau, Nature 409, 490 (2001). 2. D.F. Phillips, A. Fleischhauer, A. Mair, R.L. Walsworth, and M.D. Lukin, Phys. Rev. Lett. 86, 783 (2001). 3. A. Vaziri, Gregor Weihs, and A. Zeilinger, cond-mat/0111033.

A near-infrared SETI experiment: instrument overview

NASA Astrophysics Data System (ADS)

Wright, Shelley A.; Werthimer, Dan; Treffers, Richard R.; Maire, Jérôme; Marcy, Geoffrey W.; Stone, Remington P. S.; Drake, Frank; Meyer, Elliot; Dorval, Patrick; Siemion, Andrew

2014-07-01

We are designing and constructing a new SETI (Search for Extraterrestrial Intelligence) instrument to search for direct evidence of interstellar communications via pulsed laser signals at near-infrared wavelengths. The new instrument design builds upon our past optical SETI experiences, and is the first step toward a new, more versatile and sophisticated generation of very fast optical and near-infrared pulse search devices. We present our instrumental design by giving an overview of the opto-mechanical design, detector selection and characterization, signal processing, and integration procedure. This project makes use of near-infrared (950 - 1650 nm) discrete amplification Avalanche Photodiodes (APD) that have > 1 GHz bandwidths with low noise characteristics and moderate gain (~104). We have investigated the use of single versus multiple detectors in our instrument (see Maire et al., this conference), and have optimized the system to have both high sensitivity and low false coincidence rates. Our design is optimized for use behind a 1m telescope and includes an optical camera for acquisition and guiding. A goal is to make our instrument relatively economical and easy to duplicate. We describe our observational setup and our initial search strategies for SETI targets, and for potential interesting compact astrophysical objects.

Updating soil CO2 emission experiments to assess climate change effects and extracellular soil respiration

NASA Astrophysics Data System (ADS)

Vidal Vazquez, Eva; Paz Ferreiro, Jorge

2014-05-01

Experimental work is an essential component in training future soil scientists. Soil CO2 emission is a key issue because of the potential impacts of this process on the greenhouse effect. The amount of organic carbon stored in soils worldwide is about 1600 gigatons (Gt) compared to 750 Gt in the atmosphere mostly in the form of CO2. Thus, if soil respiration increased slightly so that just 10% of the soil carbon pool was converted to CO2, atmospheric CO2 concentrations in the atmosphere could increase by one-fifth. General circulation model predictions indicate atmosphere warming between 2 and 5°C (IPCC 2007) and precipitation changes ranging from about -15 to +30%. Traditionally, release of CO2 was thought to occur only in an intracellular environment; however, recently CO2 emissions have been in irradiated soil, in the absence of microorganisms (Maire et al., 2013). Moreover, soil plays a role in the stabilization of respiration enzymes promoting CO2 release after microorganism death. Here, we propose to improve CO2 emission experiments commonly used in soil biology to investigate: 1) effects of climatic factors on soil CO2 emissions, and 2) rates of extracellular respiration in soils and how these rates are affected by environmental factors. Experiment designed to assess the effect of climate change can be conducted either in field conditions under different ecosystems (forest, grassland, cropland) or in a greenhouse using simple soil chambers. The interactions of climate change in CO2 emissions are investigated using climate-manipulation experiment that can be adapted to field or greenhouse conditions (e.g. Mc Daniel et al., 2013). The experimental design includes a control plot (without soil temperature and rain manipulation) a warming treatment as well as wetting and/or drying treatments. Plots are warmed to the target temperature by procedures such as infrared heaters (field) or radiant cable (greenhouse). To analyze extracellular respiration, rates of CO2 emissions from sterilized soils and their unsterilized counterparts are compared. Moreover, different pH treatments are compared to analyze how soil pH affects extracellular CO2 release. Students benefit from experimental learning. Practical courses, being either in the field or indoors are of vital importance to bring soil processes to life and to evaluate implications for environment and climate change. IPCC, 2007: Climate Change 2007: The Physical Science Basis. Contribution of Working Group I to the Fourth Assessment Report of the Intergovernmental Panel on Climate Change (Solomon, S., D. Qin, M. Manning, Z. Chen, M. Marquis, K.B. Averyt, M. Tignor and H.L. Miller (eds.). Cambridge University Press, Cambridge, United Kingdom, 996 pp. Maire, V., G. Alvarez, J. Colombet, A. Comby, R. Despinasse, E. Dubreucq, M. Joly, A.-C. Lehours, V. Perrier, T. Shahzad, and S. Fontaine. 2013. An unknown oxidative metabolism substantially contributes to soil CO2 emissions. Biogeochemistry, 10, 1155-1167, 2013

Fusion–fission experiments in Aphidius: evolutionary split without isolation in response to environmental bimodality

PubMed Central

Emelianov, I; Hernandes-Lopez, A; Torrence, M; Watts, N

2011-01-01

Studying host-based divergence naturally maintained by a balance between selection and gene flow can provide valuable insights into genetic underpinnings of host adaptation and ecological speciation in parasites. Selection-gene flow balance is often postulated in sympatric host races, but direct experimental evidence is scarce. In this study, we present such evidence obtained in host races of Aphidius ervi, an important hymenopteran agent of biological control of aphids in agriculture, using a novel fusion–fission method of gene flow perturbation. In our study, between-race genetic divergence was obliterated by means of advanced hybridisation, followed by a multi-generation exposure of the resulting genetically uniform hybrid swarm to a two-host environment. This fusion–fission procedure was implemented under two contrasting regimes of between-host gene flow in two replicated experiments involving different racial pairs. Host-based genetic fission in response to environmental bimodality occurred in both experiments in as little as six generations of divergent adaptation despite continuous gene flow. We demonstrate that fission recovery of host-based divergence evolved faster and hybridisation-induced linkage disequilibrium decayed slower under restricted (6.7%) compared with unrestricted gene flow, directly pointing at a balance between gene flow and divergent selection. We also show, in four separate tests, that random drift had no or little role in the observed genetic split. Rates and patterns of fission divergence differed between racial pairs. Comparative linkage analysis of these differences is currently under way to test for the role of genomic architecture of adaptation in ecology-driven divergent evolution. PMID:20924399

Emerging roles in plant defense for cis-jasmone-induced cytochrome P450 CYP81D11.

PubMed

Matthes, Michaela; Bruce, Toby; Chamberlain, Keith; Pickett, John; Napier, Johnathan

2011-04-01

cis-Jasmone is a volatile organic compound emitted constitutively by flowers or leaves of several plant species where it acts as an attractant for pollinators and as a chemical cue for host localisation (or avoidance) for insects. ( 1-3) It is also released by some plant species after feeding damage inflicted by herbivorous insects and in this case might serve as a chemical cue for parasitoids to guide them to their prey (so called "indirect defense"). ( 4,5) Moreover, we have recently shown that plants can perceive cis-jasmone and that it acts as a signaling molecule in A. thaliana, inducing a discrete and distinctive suite of genes, of which a large subset is putatively involved in metabolism and defense responses. ( 6) Cytochrome P450s feature prominently in these functional subsets and of these the highest fold change upon cis-jasmone treatment occurred with the cytochrome CYP81D11 (At3g28740). ( 6) Hence this gene was chosen for a more thorough analysis of the potential biological relevance of the cis-jasmone induced defense response. Although the precise function of CYP81D11 remains to be determined, we could previously demonstrate its involvement in the indirect defense response in Arabidopsis, as plants exposed to cis-jasmone ceased to be attractive to the aphid parasitoid Aphidius ervi when this P450 was inactivated by T-DNA insertion mutagenesis. ( 6) Here we report additional experiments which give further support to a role of CYP81D11 in the direct or indirect defense response of A. thaliana.

Midline thalamic reuniens lesions improve executive behaviors.

PubMed

Prasad, J A; Abela, A R; Chudasama, Y

2017-03-14

The role of the thalamus in complex cognitive behavior is a topic of increasing interest. Here we demonstrate that lesions of the nucleus reuniens (NRe), a midline thalamic nucleus interconnected with both hippocampal and prefrontal circuitry, lead to enhancement of executive behaviors typically associated with the prefrontal cortex. Rats were tested on four behavioral tasks: (1) the combined attention-memory (CAM) task, which simultaneously assessed attention to a visual target and memory for that target over a variable delay; (2) spatial memory using a radial arm maze, (3) discrimination and reversal learning using a touchscreen operant platform, and (4) decision-making with delayed outcomes. Following NRe lesions, the animals became more efficient in their performance, responding with shorter reaction times but also less impulsively than controls. This change, combined with a decrease in perseverative responses, led to focused attention in the CAM task and accelerated learning in the visual discrimination task. There were no observed changes in tasks involving either spatial memory or value-based decision making. These data complement ongoing efforts to understand the role of midline thalamic structures in human cognition, including the development of thalamic stimulation as a therapeutic strategy for acquired cognitive disabilities (Schiff, 2008; Mair et al., 2011), and point to the NRe as a potential target for clinical intervention. Published by Elsevier Ltd.

Accessing Recent Trend of Land Surface Temperature from Satellite Observations

NASA Technical Reports Server (NTRS)

Shen, Suhung; Leptoukh, Gregory G.; Romanov, Peter

2011-01-01

Land surface temperature (Ts) is an important element to measure the state of terrestrial ecosystems and to study surface energy budgets. In support of the land cover/land use change-related international program MAIRS (Monsoon Asia Integrated Regional Study), we have collected global monthly Ts measured by MODIS since the beginning of the missions. The MODIS Ts time series have approximately 11 years of data from Terra since 2000 and approximately 9 years of data from Aqua since 2002, which makes possible to study the recent climate, such as trend. In this study, monthly climatology from two platforms are calculated and compared with that from AIRS. The spatial patterns of Ts trends are accessed, focusing on the Eurasia region. Furthermore, MODIS Ts trends are compared with those from AIRS and NASA's atmospheric assimilation model, MERRA (Modern Era Retrospective-analysis for Research and Applications). The preliminary results indicate that the recent 8-year Ts trend shows an oscillation-type spatial variation over Eurasia. The pattern is consistent for data from MODIS, AIRS, and MERRA, with the positive center over Eastern Europe, and the negative center over Central Siberia. The calculated climatology and anomaly of MODIS Ts will be integrated into the online visualization system, Giovanni, at NASA GES DISC for easy use by scientists and general public.

Characterization of natural habitats and diversity of Libyan desert truffles.

PubMed

Bouzadi, Mozidi; Grebenc, Tine; Turunen, Ossi; Kraigher, Hojka; Taib, Hassan; Alafai, Abdulhafied; Sbissi, Imed; Assad, Mamdouh El Haj; Bedade, Dattatray; Shamekh, Salem

2017-10-01

Desert truffles have traditionally been used as food in Libya. Desert truffle grows and gives fruit sporadically when adequate and properly distributed rainfall occurs with existence of suitable soil and mycorrhizal host plant. The present study aimed to identify and characterize two kinds of wild desert truffles from ecological and nutritional points that were collected from the studied area. The truffle samples were identified as Terfezia (known as red or black truffle) and Tirmania (known as white truffle). The nutritional values (protein, lipid and carbohydrate) of both Libyan wild truffle ( Terfezia and Tirmania) were determined on a dry weight basis and result showed that Tirmania and Terfezia contained 16.3 and 18.5% protein, 6.2 and 5.9% lipid, 67.2 and 65% carbohydrate, respectively, in ascocarp biomass. The soil pH of the upper and lower regions of the Hamada Al-Hamra ranged between 8.2 and 8.5 giving suitable conditions for fructification. The plants, Helianthemum kahiricum and Helianthemum lippii were the dominant plants in Hamada Al-Hamra region found to form a mycorrhiza with desert truffles. The phylogenetic analysis of the genomic rDNA ITS region showed that, out of five collections three represented Tirmania pinoyi (Maire) Malencon, one Tirmania nivea (Desf.) Trappe, and one Terfezia boudieri Chatin.

Perceived discrimination as a risk factor for depressive symptoms and substance use among Hispanic adolescents in Los Angeles.

PubMed

Basáñez, Tatiana; Unger, Jennifer B; Soto, Daniel; Crano, William; Baezconde-Garbanati, Lourdes

2013-01-01

Discrimination has been associated with adverse psychological and physical health outcomes, but few studies have examined the effects of discrimination on Hispanic adolescents. This study assessed the relation of perceived discrimination with depressive symptoms and drug use. Covariates included immigrant generation status (GS). A second objective was to examine the potentially moderating effect of neighborhoods' ethnic composition as suggested by Mair et al. Secondary data analyses of a longitudinal survey examined self-reports of Hispanic adolescents in 9th grade (the first year of high school) and 11th grade at seven high schools in Los Angeles. (1) Perceiving discrimination in 9th grade significantly predicted depressive symptoms (β=0.23, p<0.01) and drug use (β=0.12, p<0.01) in 11th grade, even after controlling for socioeconomic status, gender, acculturation, and GS in the USA. The third GS group reported significantly higher perceptions of discrimination compared to newer immigrants. (2) Neighborhoods' ethnic composition was included as a moderator of the association between perceived discrimination and the outcomes, but did not moderate the relation. Teaching Hispanic adolescents effective strategies for coping with discrimination, such as increasing their sense of belongingness in the American mainstream, may prove useful in preventing drug use and depressive symptoms.

Delmopinol-induced matrix removal facilitates photodynamic therapy and chlorhexidine methods for disinfecting mixed oral biofilms

NASA Astrophysics Data System (ADS)

Rogers, Stephen Christopher

It is often observed that the slimy matrixes of various bacterial-formed biofilms can limit their disinfection. This investigation demonstrated that disinfection effectiveness by either photodynamic therapy (PDT) or chlorhexidine irrigation is significantly improved by collapse of that matrix using the non-bactericidal reagent delmopinol as part of the treatment sequence. Cyclic shear-producing conditions were used to grow 4-day, whole salivary and growth media biofilms on glow-discharge-treated polystyrene (N=46) and mini-germanium internal reflection prisms to serve in a periodontal crypt model of disinfection by either methylene-blue-mediated PDT or by chlorhexidine irrigation. Assays for bacterial viability, with and without treatments, were performed by alamarBlueRTM fluorescent methods, statistically applied (ANOVA, Tukey's HSD). Multiple Attenuated Internal Reflection Infrared (MAIR-IR) assays confirmed selective removal of the predominantly polysaccharide matrix materials by the delmopinol treatment, but not by equivalent water or chlorhexidine methods. Confocal-IR microscopy showed that the delmopinol reagent, alone, caused about one-third of each wet biofilm to be removed, while bacterial re-growth was confirmed by alamarBlueRTM assay. Chlorhexidine and PDT suppression of bacterial activity without regrowth was significantly improved with the added delmopinol treatment, and is likely to provide similarly beneficial results in the effective disinfection of diverse biofilms in many settings.

Perceived discrimination as a risk factor for depressive symptoms and substance use among Hispanic adolescents in Los Angeles

PubMed Central

Basáñez, Tatiana; Unger, Jennifer B; Soto, Daniel; Crano, William; Baezconde-Garbanati, Lourdes

2015-01-01

Objectives Discrimination has been associated with adverse psychological and physical health outcomes, but few studies have examined the effects of discrimination on Hispanic adolescents. This study assessed the relation of perceived discrimination with depressive symptoms and drug use. Covariates included immigrant generation status (GS). A second objective was to examine the potentially moderating effect of neighborhoods’ ethnic composition as suggested by Mair et al. Design Secondary data analyses of a longitudinal survey examined self-reports of Hispanic adolescents in 9th grade (the first year of high school) and 11th grade at seven high schools in Los Angeles. Results (1) Perceiving discrimination in 9th grade significantly predicted depressive symptoms (β = 0.23, p<0.01) and drug use (β = 0.12, p<0.01) in 11th grade, even after controlling for socioeconomic status, gender, acculturation, and GS in the USA. The third GS group reported significantly higher perceptions of discrimination compared to newer immigrants. (2) Neighborhoods’ ethnic composition was included as a moderator of the association between perceived discrimination and the outcomes, but did not moderate the relation. Conclusion Teaching Hispanic adolescents effective strategies for coping with discrimination, such as increasing their sense of belongingness in the American mainstream, may prove useful in preventing drug use and depressive symptoms. PMID:22897755

What Does It Mean to be Central? A Botanical Geography of Paris 1830-1848.

PubMed

Hoquet, Thierry

2016-02-01

This paper focuses on the geography of the botanical community in Paris, under the July Monarchy (1830-1848). At that time, the Muséum d'Histoire naturelle (MHN) was at its institutional acme and, under the impulse of François Guizot, its budget was increasing dramatically. However, closer attention to manuscript sources (correspondence, travel diaries) reveals that the botanists of the time favoured other private institutions, located both on the Right and Left Banks of the Seine. The MHN was prestigious for its collections and professors but it was relatively remote from the centre of Paris, and its plant samples were sometimes difficult to access. Several other first-class private herbaria granted liberal access to botanists: those of Jacques Gay, Phillip Barker Webb, and Benjamin Delessert. Thanks to their wealth, these plant amateurs had ownership of historical herbaria consisting of species types alongside rich botanical libraries. Botanists visiting Paris from foreign countries or other provinces of France also spent some time studying less general plant collections, like those of Count Jaubert, or specialized collections, like Montagne's or Léveillé's on cryptogams. Other botanists also enjoyed renown at the time, although they published little, if anything (like Maire). Living in crammed apartments, literally in the middle of their plant samples, these botanists were key nodes in botanical networks, although they had no relation with the prestigious MHN.

A radiographic survey of monumental masonry workers in Aberdeen

PubMed Central

Davies, T. A. Lloyd; Doig, A. T.; Fox, A. J.; Greenberg, M.

1973-01-01

Lloyd Davies, T. A., Doig, A. T., Fox, A. J., and Greenberg, M. (1973).British Journal of Industrial Medicine,30, 227-231. A radiographic survey of monumental masonry workers in Aberdeen. A survey of radiographic appearances of the lungs of monumental masonry workers in Aberdeen was carried out to determine the present prevalence of abnormalities and to serve as a standard for future comparisons in view of changes in methods of working. No major change could be detected in the status of these granite workers in Aberdeen over the past 20 years but the different methods of survey used by Mair in 1951 and by the present study did not allow of strict comparison. Chest radiographs were reported on by three readers independently using the National Coal Board elaboration of the ILO classification and a score was given to each film using Oldham's method. Multiple regression analysis showed that ϰ-ray changes were related to years in granite but progression was slow in comparison with foundry workers. The prevalence of radiographic appearances of category 1 or greater was 3·0% overall and 4·6% for workers in dusty jobs. Evidence of pneumoconiosis was not observed in workers exposed for less than 20 years. With the environmental control attained the threshold limit values for respirable dust were not often much exceeded. PMID:4353240

Image formation by bifocal lenses in a trilobite eye?

PubMed

Gál, J; Horváth, G; Clarkson, E N; Haiman, O

2000-01-01

In this work we report on a unique and ancient type of eye, in which the lower surface of the upper calcite lens units possessed an enigmatic central bulge making the dioptric apparatus similar to a bifocal lens. This eye belonged to the trilobite Dalmanitina socialis, which became extinct several hundred million years ago. As far as we know, image formation by bifocal lenses of this kind did/does not occur in any other ancient or modern animal visual system. We suggest that the function of these bifocal lenses may be to enable the trilobite to see simultaneously both very near (e.g. floating food particles and tiny preys) and far (e.g. sea floor, conspecifics, or approaching enemies) in the optical environment through the central and peripheral lens region, respectively. This was the only reasonable function we could find to explain the puzzling lens shape. We admit that it is not clear whether bifocality was necessary for the animal studied. We show that the misleading and accidental resemblance of an erroneous correcting lens surface (designed by René DesCartes in 1637 [DesCartes, R. (1637). Oeuvres de DesCartes. La Géometrie. Livre 2. pp. 134. J. Maire, Leyden] to the correcting interface in the compound Dalmanitina lens may be the reason why the earlier students of the Dalmanitina lens did not recognize its possible bifocality.

NASA Land Cover and Land Use Change (LCLUC): an interdisciplinary research program.

PubMed

Justice, Chris; Gutman, Garik; Vadrevu, Krishna Prasad

2015-01-15

Understanding Land Cover/Land Use Change (LCLUC) in diverse regions of the world and at varied spatial scales is one of the important challenges in global change research. In this article, we provide a brief overview of the NASA LCLUC program, its focus areas, and the importance of satellite remote sensing observations in LCLUC research including future directions. The LCLUC Program was designed to be a cross-cutting theme within NASA's Earth Science program. The program aims to develop and use remote sensing technologies to improve understanding of human interactions with the environment. Since 1997, the NASA LCLUC program has supported nearly 280 research projects on diverse topics such as forest loss and carbon, urban expansion, land abandonment, wetland loss, agricultural land use change and land use change in mountain systems. The NASA LCLUC program emphasizes studies where land-use changes are rapid or where there are significant regional or global LCLUC implications. Over a period of years, the LCLUC program has contributed to large regional science programs such as Land Biosphere-Atmosphere (LBA), the Northern Eurasia Earth Science Partnership Initiative (NEESPI), and the Monsoon Area Integrated Regional Study (MAIRS). The primary emphasis of the program will remain on using remote sensing datasets for LCLUC research. The program will continue to emphasize integration of physical and social sciences to address regional to global scale issues of LCLUC for the benefit of society. Copyright © 2014. Published by Elsevier Ltd.

A robust and contact resolving Riemann solver on unstructured mesh, Part I, Euler method

NASA Astrophysics Data System (ADS)

Shen, Zhijun; Yan, Wei; Yuan, Guangwei

2014-07-01

This article presents a new cell-centered numerical method for compressible flows on arbitrary unstructured meshes. A multi-dimensional Riemann solver based on the HLLC method (denoted by HLLC-2D solver) is established. The work is an extension from the cell-centered Lagrangian scheme of Maire et al. [27] to the Eulerian framework. Similarly to the work in [27], a two-dimensional contact velocity defined on a grid node is introduced, and the motivation is to keep an edge flux consistency with the node velocity connected to the edge intrinsically. The main new feature of the algorithm is to relax the condition that the contact pressures must be same in the traditional HLLC solver. The discontinuous fluxes are constructed across each wave sampling direction rather than only along the contact wave direction. The two-dimensional contact velocity of the grid node is determined via enforcing conservation of mass, momentum and total energy, and thus the new method satisfies these conservation properties at nodes rather than on grid edges. Other good properties of the HLLC-2d solver, such as the positivity and the contact preserving, are described, and the two-dimensional high-order extension is constructed employing MUSCL type reconstruction procedure. Numerical results based on both quadrilateral and triangular grids are presented to demonstrate the robustness and the accuracy of this new solver, which shows it has better performance than the existing HLLC method.

Assessment of urban heat Island for Craiova from satellite-based LST

NASA Astrophysics Data System (ADS)

Udristioiu, Mihaela Tinca; Velea, Liliana; Bojariu, Roxana; Sararu, Silviu Constantin

2017-12-01

The urban heat island is defined as an excess of heating in urban areas compared with surrounding rural zones which is illustrated by higher surface and air temperatures in the inner part of the cities. The aim of this study is to identify the UHI effect for Craiova - the largest city in the South-Western part of Romania - and to assess its intensity during summer. To this end, MODIS Land surface temperature (LST) for day and night for summer months (June, July, August), in the interval 2002-2017, as well as yearly Land Cover Type (LCT) data also from MODIS were employed. Furthermore, measurements of air and soil temperature from meteorological station Craiova, available from the National Meteorological Administration database, were used to investigate their relation with LST. The analysis shows that in the urban area of Craiova the long-term summer mean LST is about 4 °C (2 °C), higher than in the rural area during daytime (nighttime). During high temperatures episodes, the mean daytime LST reaches 45-47 °C in the city, while the difference from the rural surrounding area is of 2-3 °C. A high correlation (0.77-0.83) is found between LST and air temperature for all land-use types in the area considered. Both LST and 2m-air temperature time-series manifest an increasing linear tendency over the period considered, being more pronounced during the day.

Aqueous benzene-diols react with an organic triplet excited state and hydroxyl radical to form secondary organic aerosol.

PubMed

Smith, Jeremy D; Kinney, Haley; Anastasio, Cort

2015-04-21

Chemical processing in atmospheric aqueous phases, such as cloud and fog drops, can play a significant role in the production and evolution of secondary organic aerosol (SOA). In this work we examine aqueous SOA production via the oxidation of benzene-diols (dihydroxy-benzenes) by the triplet excited state of 3,4-dimethoxybenzaldehyde, (3)DMB*, and by hydroxyl radical, ˙OH. Reactions of the three benzene-diols (catechol (CAT), resorcinol (RES) and hydroquinone (HQ)) with (3)DMB* or ˙OH proceed rapidly, with rate constants near diffusion-controlled values. The two oxidants exhibit different behaviors with pH, with rate constants for (3)DMB* increasing as pH decreases from pH 5 to 2, while rate constants with ˙OH decrease in more acidic solutions. Mass yields of SOA were near 100% for all three benzene-diols with both oxidants. We also examined the reactivity of atmospherically relevant mixtures of phenols and benzene-diols in the presence of (3)DMB*. We find that the kinetics of phenol and benzene-diol loss, and the production of SOA mass, in mixtures are generally consistent with rate constants determined in experiments containing a single phenol or benzene-diol. Combining our aqueous kinetic and SOA mass yield data with previously published gas-phase data, we estimate a total SOA production rate from benzene-diol oxidation in a foggy area with significant wood combustion to be nearly 0.6 μg mair(-3) h(-1), with approximately half from the aqueous oxidation of resorcinol and hydroquinone, and half from the gas-phase oxidation of catechol.

Future Earth, Global Science and Regional Programs: Building regional integrated science capacities in a global science organization

NASA Astrophysics Data System (ADS)

Tewksbury, J.

2016-12-01

Future Earth has emerged from the more than 30-year history of Global Change Research Programs, including IGBP, DIVERSITAS and IHDP. These programs supported interdisciplinary science in service of societies around the world. Now, their focus on building a greater understanding of changing Earth systems and their couplings with society has passed to Future Earth - with an important addition: Future Earth was also established to focus global change efforts around key societal challenges. The implications for the structure of Future Earth are large. Many challenges within topics, such as the water, energy, food nexus or the future of cities, are manifested within local, national, and regional contexts. How should we organize globally to most effectively confront these multi-scale challenges? The solution proposed in the framing of Future Earth was the formation of regional as well as national committees, as well as the formation of regional centers and offices. Regional Committees serve to both advocate for Future Earth in their regions and to advocate for regional interests in the global Future Earth platform, while regional Centers and offices are built into the Future Earth secretariat to perform a parallel regional implementation function. Implementation has not been easy, and the process has placed regionally-focused projects in an awkward place. Programs such as the Monsoon Asia Integrated Regional Study (MAIRS), the Northern Eurasia Earth Science Partnership Initiative (NEESPI), and the South/Southeast Asia Research Initiative (SARI) represent some of the best global change communities in the world, but by design, their focus is regional. The effective integration of these communities into the Future Earth architecture will be critical, and this integration will require the formation of strong regional committees and regional centers.

Online Time Series Analysis of Land Products over Asia Monsoon Region via Giovanni

NASA Technical Reports Server (NTRS)

Shen, Suhung; Leptoukh, Gregory G.; Gerasimov, Irina

2011-01-01

Time series analysis is critical to the study of land cover/land use changes and climate. Time series studies at local-to-regional scales require higher spatial resolution, such as 1km or less, data. MODIS land products of 250m to 1km resolution enable such studies. However, such MODIS land data files are distributed in 10ox10o tiles, due to large data volumes. Conducting a time series study requires downloading all tiles that include the study area for the time period of interest, and mosaicking the tiles spatially. This can be an extremely time-consuming process. In support of the Monsoon Asia Integrated Regional Study (MAIRS) program, NASA GES DISC (Goddard Earth Sciences Data and Information Services Center) has processed MODIS land products at 1 km resolution over the Asia monsoon region (0o-60oN, 60o-150oE) with a common data structure and format. The processed data have been integrated into the Giovanni system (Goddard Interactive Online Visualization ANd aNalysis Infrastructure) that enables users to explore, analyze, and download data over an area and time period of interest easily. Currently, the following regional MODIS land products are available in Giovanni: 8-day 1km land surface temperature and active fire, monthly 1km vegetation index, and yearly 0.05o, 500m land cover types. More data will be added in the near future. By combining atmospheric and oceanic data products in the Giovanni system, it is possible to do further analyses of environmental and climate changes associated with the land, ocean, and atmosphere. This presentation demonstrates exploring land products in the Giovanni system with sample case scenarios.

Topsoil investigation on two different urban areas in West Hungary

NASA Astrophysics Data System (ADS)

Horváth, Adrienn; Bidló, András

2015-04-01

Heavy metal contents of urban soils in two different urban areas have been investigated in Sopron town (169.01 km2) and in Szombathely town 97.50 km2) in Hungary. In a standard network 208 samples have been collected Sopron from 0 to 10 and from 10 to 20 cm depth. 164 samples have been taken on 88 points in the area of Szombathely. We analysed all of the soil samples with ICP equipment applying Lakanen-Erviö method (Ammonium Acetate - EDTA (pH 4.65)) and we focused on Co, Cu, Ni, Pb and Zn during the evaluation. The soils of suburb are determined largely by the bedrock, but in the downtown the soil pH was alkaline in soils of Sopron. Therefore, the toxic elements are still accumulated in the topsoil. The lead content was very high (suggested pollution limit >25 mg Pb/kg) in both layers on the whole area of the town. Urban soils with high copper content (among 611 mg and 1221 mg Cu/kg) have been collected from garden and viticulture areas. According to our measurements we found the highest average values in the soils of parks. The pH of urban topsoils of Szombathely was mostly neutral and it was lower in soil of agricultural areas on the suburb, where the artificial fertiliser is still used. The Pb content was high (more than 25 mg Pb/kg) in case of 13 samples next to traffic roads of the town. The Co, Cu and Ni results were below the suggested Hungarian background limits. The Zn values were above the suggested Hungarian pollution (20 mg Zn/kg) and interventional limits (>40 mg Zn/kg) in most cases. According to the results we found the highest average values of heavy metals in the soil of traffic areas or next to the Gyöngyös creek, which could be originated from traffic contamination, binding in the soil of urban green spaces, thus possibly affects human health. The research is supported by the "Agroclimate-2" (VKSZ_12-1-2013-0034) joint EU-national research project. Keywords: anthropogenic effects, heavy metal content, lead pollution, polluted urban soils

Radiological investigation of phosphate fertilizers: Leaching studies.

PubMed

Hegedűs, Miklós; Tóth-Bodrogi, Edit; Németh, Szabolcs; Somlai, János; Kovács, Tibor

2017-07-01

The raw materials of the phosphate fertilizer industry are the various apatite minerals. Some of these have high levels of natural radionuclides, and thus phosphate fertilizers contain significant amounts of U-238, K-40 and Ra-226. These can leach out of the fertilizers used in large quantities for resupplying essential nutrients in the soil and can then enter the food chain through plants, thereby increasing the internal dose of the affected population. In the current study, the radiological risk of eight commercially available phosphate fertilizers (superphosphate, NPK, PK) and their leaching behaviours were investigated using different techniques (gamma and alpha spectrometry), and the dose contributions of using these fertilizers were estimated. To characterize the leaching behaviour, two leaching procedures were applied and compared -the MSZ 21470-50 (Hungarian standard) and the Tessier five-step sequential extraction method. Based on the evaluation of the gamma-spectra, it is found that the level of Th-232 in the samples was low (max.7 ± 6 Bq kg -1 ), the average Ra-226 activity concentration was 309 ± 39 Bq kg -1 (min. 10 ± 8 Bq kg -1 , max. 570 ± 46 Bq kg -1 ), while the K-40 concentrations (average 3139 ± 188 Bq kg -1 , min. 51 ± 36 Bq kg -1 ) could be as high as 7057 ± 427 Bq kg -1 . The high K-40 can be explained by reference to the composition of the investigated fertilizers (NPK, PK). U concentrations were between 15 and 361 Bq kg -1 , with the average of 254 Bq kg -1 , measured using alpha spectrometry. The good correlation between P 2 O 5 content and radioactivity reported previously is not found in our data. The leaching studies reveal that the mobility of the fertilizer's uranium content is greatly influenced by the parameters of the leaching methods. The availability of U to water ranged between 3 and 28 m/m%, while the Lakanen-Erviö solution mobilized between 10 and 100% of the U content. Copyright © 2016 Elsevier Ltd. All rights reserved.

[Medicine and humanism: insights of the Nürnberg city physician Theodericus Ulsenius regarding Morbus Gallicus].

PubMed

Santing, C G

1995-01-01

The Nuremberg physician and humanist Theodericus Ulsenius (c. 1460-1508) was the author of two works on the so-called Morbus Gallicus. In 1496 he published a Vaticinium in epidemicam scabiem, and he also wrote fifty aphorisms, entitled Cura mali francici. In this article I will characterize Ulsenius' ideas and compare these to the measures the Nuremberg town government took to diminish the dangerous effects of the epidemic. In the function of official town physician, Ulsenius was one of the chief advisers and executives of the Nuremberg health policy. As the 'Ratsverlässe' (records of the town-council meetings) give detailed information, the reactions of senate and physicians can be followed from day to day. The Vaticinium a poem of 100 hexameters was printed at the office of Hans Mair and presented as a pamphlet with a woodcut from the workshop of Albrecht Dürer. The verses refer to a dream of the poet, in which the God Apollo addresses him and talks about the terrible disease. The origin and symptoms of the illness are discussed extensively, in accordance with the prevailing medico-astrological conceptions. Nevertheless, the poem ist not a medical piece of work, but a literary-styled and humanistically appropriate description of the recent epidemic, meant for fellow members of the German respublica litteraria. Like most of Ulsenius' writings, the Cura mali francici only survived as a copy made by his colleague Hartmann Schedel. It seems that the author had different types of audience in mind. The aphorisms refer to the Aphorisms of his great example, the famous Ancient medical doctor Hippocrates of Kos. The addresses of the Cura are obviously medical professionals: the physician in the towns harassed by the Morbus Gallicus and especially the medical professors who hat to lecture on the new ailment.

Sonification for geoscience: Listening to faults from the inside

NASA Astrophysics Data System (ADS)

Barrett, Natasha; Mair, Karen

2014-05-01

Here we investigate the use of sonification for geoscience by sonifying the data generated in computer models of earthquake processes. Using mainly parameter mapping sonification, we explore data from our recent 3D DEM (discrete element method) models where granular debris is sheared between rough walls to simulate an evolving fault (e.g. Mair and Abe, 2011). To best appreciate the inherently 3D nature of the crushing and sliding events (continuously tracked in our models) that occur as faults slip, we use Ambisonics (a sound field recreation technology). This allows the position of individual events to be preserved generating a virtual 3D soundscape so we can explore faults from the inside. The addition of 3D audio to the sonification tool palate further allows us to more accurately connect to spatial data in a novel and engaging manner. During sonification, events such as grain scale fracturing, grain motions and interactions are mapped to specific sounds whose pitch, timbre, and volume reflect properties such as the depth, character, and size of the individual events. Our interactive and real-time approaches allow the listener to actively explore the data in time and space, listening to evolving processes by navigating through the spatial data via a 3D mouse controller. The soundscape can be heard either through an array of speakers or using a pair of headphones. Emergent phenomena in the models generate clear sound patterns that are easily spotted. Also, because our ears are excellent signal-to-noise filters, events are recognizable above the background noise. Although these features may be detectable visually, using a different sense (and part of the brain) gives a fresh perspective and facilitates a rapid appreciation of 'signals' through audio awareness, rather than specific scientific training. For this reason we anticipate significant potential for the future use of sonification in the presentation, interpretation and communication of geoscience datasets to both experts and the general public.

Genetic variants in FBN-1 and risk for thoracic aortic aneurysm and dissection.

PubMed

Iakoubova, Olga A; Tong, Carmen H; Rowland, Charles M; Luke, May M; Garcia, Veronica E; Catanese, Joseph J; Moomiaie, Remo M; Sotonyi, Peter; Ascady, Gyorgy; Nikas, Demitrios; Dedelias, Panagiotis; Tranquilli, Maryann; Elefteriades, John A

2014-01-01

A recent genome wide association study (GWAS) by LeMaire et al. found that two single nucleotide polymorphisms (SNPs), rs2118181 and rs10519177 in the FBN-1 gene (encoding Fibrillin-1), were associated with thoracic aortic dissection (TAD), non-dissecting thoracic aortic aneurysm (TAA), and thoracic aortic aneurysm or dissection (TAAD); the largest effect was observed for the association of rs2118181 with TAD. We investigated whether rs2118181 and rs10519177 were associated with TAD, TAA, and TAAD in the Yale study. The genotypes of rs2118181 and rs10519177 were determined for participants in the Yale study: 637 TAAD cases (140 TAD, 497 TAA) and 275 controls from the United States, Hungary, and Greece. The association of the genotypes with TAD, TAA and TAAD were assessed using logistic regression models adjusted for sex, age, study center and hypertension. In the Yale study, rs2118181 was associated with TAD: compared with non-carriers, carriers of the risk allele had an unadjusted odds ratio for TAD of 1.80 (95% CI 1.15-2.80) and they had odds ratio for TAD of 1.87 (95% CI 1.09-3.20) after adjusting for sex, age, study center and hypertension. We did not find significant differences in aortic size, a potential confounder for TAD, between rs2118181 risk variant carriers and non-carriers: mean aortic size was 5.56 (95% CI: 5.37-5.73) for risk variant carriers (CC+CT) and was 5.48 (95% CI: 5.36-5.61) for noncarriers (TT) (p = 0.56). rs2118181 was not associated with TAA or TAAD. rs10519177 was not associated with TAD, TAA, or TAAD in the Yale study. Thus, the Yale study provided further support for the association of the FBN-1 rs2118181SNP with TAD.

The Effect of Fracture Filler Composition on the Parameters of Shear Deformation Regime

NASA Astrophysics Data System (ADS)

Pavlov, D.; Ostapchuk, A.; Batuhtin, I.

2015-12-01

Geomechanical models of different slip mode nucleation and transformation can be developed basing on laboratory experiments, in which regularities of shear deformation of gouge-filled faults are studied. It's known that the spectrum of possible slip modes is defined by both macroscopic deformation characteristics of the fault and mesoscale structure of fault filler. Small variations of structural parameters of the filler may lead to a radical change of slip mode [1, 2]. This study presents results of laboratory experiments investigating regularities of shear deformation of discontinuities filled with multicomponent granular material. Qualitative correspondence between experimental results and natural phenomena is detected. The experiments were carried out in the classical "slider model" statement. A granite block slides under shear load on a granite substrate. The contact gap between rough surfaces was filled with a discrete material, which simulated the principal slip zone of a fault. The filler components were quartz sand, salt, glass beads, granite crumb, corundum, clay and pyrophyllite. An entire spectrum of possible slip modes was obtained - from stable slip to slow-slip events and to regular stick-slip with various coseismic displacements realized per one act of instability. Mixing several components in different proportions, it became possible to trace the gradual transition from stable slip to regular stick-slip, from slow-slip events to fast-slip events. Depending on specific filler component content, increasing the portion of one of the components may lead to both a linear and a non-linear change of slip event moment (a laboratory equivalent of the seismic moment). For different filler compositions durations of equal-moment events may differ by more than two orders of magnitude. The findings can be very useful for developing geomechnical models of nucleation and transformation of different slip modes observed at natural faults. The work was supported by RFBR (grant no. 13-05-00780). 1. Mair, K., K. M. Frye, and C. Marone (2002), J.Geophys.Res., 107(B10), 2219. 2. G.G. Kocharyan, V.K. Markov, A.A. Ostapchuk, and D.V. Pavlov (2014), Phys.Mes, 17(2), 123-133.

Crotalaria (Crotalaria juncea L.) Heavy Metal Uptake in Eastern Hungary

NASA Astrophysics Data System (ADS)

László Phd, M., ,, Dr.

2009-04-01

Summary: Soil condition, plant production and ecological protection are most important parts of the sustainable agricultural activity on all over the world nowadays. Soils, their fertility, their content of different macro-, mezo-, micro-, trace elements have almost always dictated the spread of agricultural farmlands, including the plant production-, yield harvest levels and yield element contents possible. The success of agriculturists in the 20th and 21th century, particularly in the Europe has relied on inproved soil fertility managements, appropriate crop production and environmental protection. We can test and improve the situations by using different plant species (Crotalaria juncea L.) x macro nutrients (nitrogen) x chelating agents (Desferal as deferoxamine-mesilate: C25H48N6O8-CH4O3S) methods. Crotalaria has a very potential and important role in soil fertility as a green manure crop in the design of plant rotation to field plant production, in the animal foraging as a fodder-crop with a high protein content (30%) and in the pytoremediation possibilities. Field experiment was carried out on a calcareous chernozem meadow soil (Kunság-region of Hungary, Kunmadaras) in partly of crotalaria experiment series (5 years) in 2001. The agrochemical parameters of the ploughed layer of the region soils were as follows: humus 2.5-3.0%, pH (H2O) 7.7, pH (KCl) 7.0, LE (Lakanen & Erviö 1971 [3])-P2O5 183-218 mg kg-1, LE-K2O 82-115 mg kg-1, LE-Ca 1.3%, LE-Mg 56-60 mg kg-1, LE-Mn 45 mg kg-1 according to soil analysis. Nitrogen (N) x Desferal ("D"-Novartis Pharma AG Basie [7], Switzerland, Suiza 500 mg) x Genotype ("G"-India-University of Agricultural Sciences, Bangalore) x Time (T) experiment involved The N levels were 0, 100, 200 and 300 kg ha-1 year-1, and Desferal 0 and 20 kg ha-1 year-1. The plot size had an area of 4x2=8 m2. Experimental datas were estimated by MANOVA of SPSS. The main results can be summarised as follows: a., At harvest, total air dry phytomass (straw+leaf) yield ranged between 8.7-16.5 t ha-1, depending on the N-treatment applied. By N+Desferal combinations the air dry straw+leaf mass achieved 19.3 t ha-1, changed between 14.2-19.3 t ha-1 depending on the treatment rates. b., On this humus-rich calcareous chernozem soil the toxic element translocation from soil (actual toxic element translocation index "ATETI" [4]) to plants can be characterized by x1 nutrient concentration of plant divided by x1 nutrient concentration of soil-1 by N treatment average effects of Al: 1.55, Ba: 0.58, Cd: 1.08, Co: 0.02, Cr: 1.88, Hg: 2.02, Mn: 0.17, Mo: 24.14, Ni: 0.05, Pb: 0.09, Se: 0.36 and Sr: 3.85. The "ATETI" values by N+D treatment average effects were in case of the Al: 1.48, Ba: 0.98, Cd: 1.17, Co: 0.02, Cr: 1.53, Hg: 0.59, Mn: 0.14, Mo: 30.15, Ni: 0.02, Pb: 0.09, Se: 0.80 and Sr: 3.06. c., Depending on the N and N+D treatments 1.9-2.3 kg Al, 1.3-1.4 kg Sr, 1.0 kg Mn, 242-523 g Ba, 31-42 g Mo, 14-17 g Pb, 3-6 g Ni, 4-5 g Cr, 2 g Cd, 0.5-2.0 g Se, 1 g Co and 0.2-0.6 g Hg accumulated in the 12.6 t ha-1 (average of N treatments) and 16.1 t ha-1 (average of N+Desferal treatments) phytomass (straw+leaf) air-dry aboveground yield by crotalaria toxic element uptake. d., On the given soil the highest quantity of 300 kg ha-1 year-1 N+20 kg ha-1 year-1 D chelating agent seemed to give already over fertilization negativ effects on all experimental results and on all possible eco-risk factors. Thus, the maintenance and improvement of the fertility of our soils has never been more important than it is today. Key words: toxic elements, bioavailability, translocation, Crotalaria juncea L. Introduction Today sustainable agricultural production has become the major issue following global change in all the world over. It is well known that it has a well established on soils. The functioning and their ability to supply nutrients, store water, release gases, modify pollutants, decrease physical degradation and produce crops is profundly influenced by their fertiliy. During the last fifty years phenomenal progress has been made in several areas of ecology of different toxic elements in soils. Concerns regarding heavy metals contamination in the environment affecting all ecosystem componets, including "soil-plant-animal-human" chain, have been identified with increasing efforts on limiting their bioavailability. Many sites have been identified as hasardous waste sites because of the presence of elevated concentrations of these elements [2]. They will remain a threat to the environment until they are removed or immobilized. We can test and improve these situation by using different plant species [8]-(Crotalaria juncea L.) x macro nutrients (nitrogen) x chelating agents [9]-(Desferal as deferoxamine-mesilate: C25H48N6O8-CH4O3S) methods. Crotalaria has a very potential and important role in soil fertility as a green manure crop [5], in the design of plant rotation to field plant production [6], in the animal foraging as a fodder-crop with a high protein content (30%) and in the pytoremediation possibilities. Nitrogen can be of considerable importance for cation-anion balance in plants. The content of this element required for optimal growth varies between 2 and 5% of the plant dry weight [1]. When the supply is suboptimal growth is retarded, nitrogen is mobilized in mature leaves and retranslocated to areas of new growth. An increase in the supply delays senescence and stimulates growth [10]. Chelating agents as the Desferal has a very important deal of ion exchanges in soils. It is regulate anion and cation concentrations in rooth zone [9]. Material and Method Field experiment was carried out on a calcareous chernozem meadow soil (Kunság-region of Hungary, Kunmadaras) in partly of crotalaria experiment series (5 years) in 2001. The agrochemical parameters of the ploughed layer of the region soils were as follows: humus 2.5-3.0%, pH (H2O) 7.7, pH (KCl) 7.0, LE (Lakanen & Erviö 1971 [3])-P2O5 183-218 mg kg-1, LE-K2O 82-115 mg kg-1, LE-Ca 1.3%, LE-Mg 56-60 mg kg-1, LE-Mn 45 mg kg-1 according to soil analysis. Nitrogen (N) x Desferal ("D"-Novartis Pharma AG Basie [7], Switzerland, Suiza 500 mg) x Genotype ("G"-India-University of Agricultural Sciences, Bangalore) x Time (T) experiment involved 4Nx2DxGx3T=24 treatments in 3 replications giving a total of 72 plots. The N levels were 0, 100, 200 and 300 kg ha-1 year-1, and Desferal 0 and 20 kg ha-1 year-1. The plot size had an area of 4x2=8 m2. Composite soil samples consisting of 15 subsamples were collected at harvest time (20.10.2001) from the ploughed layer (0-40 cm) of each plot. Plant samples were taken using 15 plants (leaf+straw) plot-1 randomly at the beginning of flowering (23.08.2001). In the soil samples the so-called "mobile" fraction extracted with ammonium-acetate+EDTA (AAc+EDTA, Lakanen & Erviö 1971 [3]) was determined by inductively coupled plasma atomic emission spectrometry (ICP-AES) detecting 23 elements at Research Institute for Soil Science and Agricultural Chemistry of the Hungarian Academy of Sciences (RISSAC-HAS). The total amount of the elements in homogenized plant samples were measured after microwave digestion using cc. HNO3+H2O2. The composition of prepared samples was analysed by ICP-AES technics detecting 23 elements at RISSAC-HAS. Experimental datas were estimated by MANOVA of SPSS. Results At harvest, total air dry phytomass (straw+leaf) yield ranged between 8.7-16.5 t ha-1, depending on the N-treatment applied. By N+Desferal combinations the air dry straw+leaf mass achieved 19.3 t ha-1, changed between 14.2-19.3 t ha-1 depending on the treatment rates. It was increased on average with an 28 % compared to mean of N doses effect. The mobile, i.e. available toxic element fraction in soil-extracted with the mixture of AAc+EDTA-varied widely for the different examined treatments. Toxic element rates (%) in soils by N and N+Desferal treatments (x1 toxic element concentration at the N-150 kg ha-1 year-1 multipled by 100 and divided by x1 toxic element concentration at the N-150+Desferal-10 kg ha-1 year-1) were 77% in case of the Se, 99% in case of the Sr, Ba, Cr, 100%: in case of the Co, Ni Mn, 101%: Cd, 102%: Al, 105%: Pb, 115%: Hg and 118%: Mo. Toxic element concentrations of plants were also influenced greatly by treatments applied. Rates of toxic elements (%) in plants by N and N+Desferal treatments (x1 toxic element concentration at the N-150 kg ha-1 year-1 multipled by 100 and divided by x1 toxic element concentration at the N-150+Desferal-10 kg ha-1 year-1) were 34% in case of the Se, 59%: Ba, 94%: Mo and Cd, 101%: Co, 107%: Al and Pb, 118%: Mn, 121%: Cr, 124: Sr, 220%: Ni and 396% Hg. On this humus-rich calcareous chernozem soil the toxic element translocation from soil (actual toxic element translocation index "ATETI" by [4]). to plants can be characterized by x1 nutrient concentration of plant divided by x1 nutrient concentration of soil-1 by N treatment average effects of Al: 1.55, Ba: 0.58, Cd: 1.08, Co: 0.02, Cr: 1.88, Hg: 2.02, Mn: 0.17, Mo: 24.14, Ni: 0.05, Pb: 0.09, Se: 0.36 and Sr: 3.85. The "ATETI" values by N+D treatment average effects were in case of the Al: 1.48, Ba: 0.98, Cd: 1.17, Co: 0.02, Cr: 1.53, Hg: 0.59, Mn: 0.14, Mo: 30.15, Ni: 0.02, Pb: 0.09, Se: 0.80 and Sr: 3.06. c., Depending on the N and N+D treatments 1.9-2.3 kg Al, 1.3-1.4 kg Sr, 1.0 kg Mn, 242-523 g Ba, 31-42 g Mo, 14-17 g Pb, 3-6 g Ni, 4-5 g Cr, 2 g Cd, 0.5-2.0 g Se, 1 g Co and 0.2-0.6 g Hg accumulated in the 12.6 t ha-1 (average of N treatments) and 16.1 t ha-1 (average of N+Desferal treatments) phytomass (straw+leaf) air-dry aboveground yield by crotalaria toxic element uptake. d., On the given soil the highest quantity of 300 kg ha-1 year-1 N+20 kg ha-1 year-1 D chelating agent seemed to give already over fertilization negativ effects on all experimental results and on all possible eco-risk factors. This paper presents the maintenance and improvement of the fertility of our soils has never been more important than it is today. Acknowledgement This study was supported by Research Institute for Soil Science and Agricultural Chemistry of the Hungarian Academy of Sciences H-Budapest, The Hebrew University of Jerusalem Faculty of Agricultural, Food and Environmental Quality Sciences, Department of Soil and Water Sciences I-Rehovot and Department of Soil Science and Agricultural Chemistry of the University of Agricultural Sciences, I-Bangalore References [1] Horst M. 1986. Mineral nutrition of higher plants. Academic Press, London Orlando San Diego New York Austin Boston Sydney Tokyo Toronto [2] Kádár I. 1992. Principles and methods in plant nutrition. RISSAC-HAS, Budapest, 398p. [3] Lakanen E. & Erviö R. 1971. A comparison of eight extractants for the determination of plant available micronutrients in soils. Acta Agr. Fenn, 123, 223-232. [4] Márton L. 2001. Scientific report. RISSAC-HAS, Budapest [5] Márton L. & Jose E.M. 2001. Effects of Crotalaria juncea L. and Crotalaria spectabilis ROTH on soil ferility and soil conservation in Hungary. Acta Agronomica Óváriensis, 43, 1-8. [6] Márton L. & Pekli J. 2003. Crotalaria (Crotalaria juncea L.) production. SZIE, Gödöllő [7] NPAG. 2001. Databank, Basie [8] Purseglove J.W. 1974. Tropical crops. I-II. Longman Group Limited, London [9] Shenker M., Hadar Y. & Chen Y. 1996. Stability constants of the fungal siderophore rhizoferrin with various microelements and calcium. Soil Sci. Soc. Am. J., 60, 1140-1144. [10] Werner B. 1992. Nutritional disorders of plants development, visual and analytical diagnosis. Gustav Fischer Verlag Jena, Stuttgart, New York. 741p.

Unusual isotopic composition of C-CO2 from sterilized soil microcosms: a new way to separate intracellular from extracellular respiratory metabolisms.

NASA Astrophysics Data System (ADS)

Kéraval, Benoit; Alvarez, Gaël; Lehours, Anne Catherine; Amblard, Christian; Fontaine, Sebastien

2015-04-01

The mineralization of organic C requires two main steps. First, microorganisms secrete exoenzymes in soil in order to depolymerize plant and microbial cell walls and release soluble substrates for microbial assimilation. The second step of mineralization, during which C is released as CO2, implies the absorption and utilization of solubilized substrates by microbial cells with the aim to produce energy (ATP). In cells, soluble substrates are carried out by a cascade of respiratory enzymes, along which protons and electrons are transferred from a substrate to oxygen. Given the complexity of this oxidative metabolism and the typical fragility of respiratory enzymes, it is traditionally considered that respiration (second step of C mineralization process) is strictly an intracellular metabolism process. The recurrent observations of substantial CO2 emissions in soil microcosms where microbial cells have been reduced to extremely low levels challenges this paradigm. In a recent study where some respiratory enzymes have shown to function in an extracellular context in soils, Maire et al. (2013) suggested that an extracellular oxidative metabolism (EXOMET) substantially contributes to CO2 emission from soils. This idea is supported by the recent publication of Blankinship et al., 2014 who showed the presence of active enzymes involved in the Krebs cycle on soil particles. Many controversies subsist in the scientific community due to the presence of non-proliferating but morphologically intact cells after irradiation that could substantially contribute to those soil CO2 emissions. To test whether a purely extracellular oxidative metabolism contribute to soil CO2 emissions, we combined high doses of gamma irradiations to different time of soil autoclaving. The presence of active and non-active cells in soil was checked by DNA and RNA extraction and by electronic microscopy. None active cells (RNA-containing cells) were detectable after irradiation, but some morphological intact cells were observed by microscopy. These "ghost" cells were completely destroyed by the irradiation-autoclaving combination releasing large amount of soluble C. The soil respiration (O2 consumption and CO2 production) was reduced by irradiation and autoclaving but not stopped, suggesting the presence of an EXOMET. The delta 13C of CO2 released in the irradiated-autoclaved soil was strongly depleted (-70‰) indicating that this extracellular metabolism induced a substantial isotopic fractionation. Our findings suggest that two main oxidative metabolisms co-occur in soils: cell respiration and EXOMET. The isotopic fractionation induced by the EXOMET open perspectives for its quantification in non-sterilized living soils.

Readiness for Delivering Digital Health at Scale: Lessons From a Longitudinal Qualitative Evaluation of a National Digital Health Innovation Program in the United Kingdom.

PubMed

Lennon, Marilyn R; Bouamrane, Matt-Mouley; Devlin, Alison M; O'Connor, Siobhan; O'Donnell, Catherine; Chetty, Ula; Agbakoba, Ruth; Bikker, Annemieke; Grieve, Eleanor; Finch, Tracy; Watson, Nicholas; Wyke, Sally; Mair, Frances S

2017-02-16

Digital health has the potential to support care delivery for chronic illness. Despite positive evidence from localized implementations, new technologies have proven slow to become accepted, integrated, and routinized at scale. The aim of our study was to examine barriers and facilitators to implementation of digital health at scale through the evaluation of a £37m national digital health program: ‟Delivering Assisted Living Lifestyles at Scale" (dallas) from 2012-2015. The study was a longitudinal qualitative, multi-stakeholder, implementation study. The methods included interviews (n=125) with key implementers, focus groups with consumers and patients (n=7), project meetings (n=12), field work or observation in the communities (n=16), health professional survey responses (n=48), and cross program documentary evidence on implementation (n=215). We used a sociological theory called normalization process theory (NPT) and a longitudinal (3 years) qualitative framework analysis approach. This work did not study a single intervention or population. Instead, we evaluated the processes (of designing and delivering digital health), and our outcomes were the identified barriers and facilitators to delivering and mainstreaming services and products within the mixed sector digital health ecosystem. We identified three main levels of issues influencing readiness for digital health: macro (market, infrastructure, policy), meso (organizational), and micro (professional or public). Factors hindering implementation included: lack of information technology (IT) infrastructure, uncertainty around information governance, lack of incentives to prioritize interoperability, lack of precedence on accountability within the commercial sector, and a market perceived as difficult to navigate. Factors enabling implementation were: clinical endorsement, champions who promoted digital health, and public and professional willingness. Although there is receptiveness to digital health, barriers to mainstreaming remain. Our findings suggest greater investment in national and local infrastructure, implementation of guidelines for the safe and transparent use and assessment of digital health, incentivization of interoperability, and investment in upskilling of professionals and the public would help support the normalization of digital health. These findings will enable researchers, health care practitioners, and policy makers to understand the current landscape and the actions required in order to prepare the market and accelerate uptake, and use of digital health and wellness services in context and at scale. ©Marilyn R Lennon, Matt-Mouley Bouamrane, Alison M Devlin, Siobhan O'Connor, Catherine O'Donnell, Ula Chetty, Ruth Agbakoba, Annemieke Bikker, Eleanor Grieve, Tracy Finch, Nicholas Watson, Sally Wyke, Frances S Mair. Originally published in the Journal of Medical Internet Research (http://www.jmir.org), 16.02.2017.

Ultra-Pure Water and Extremophilic Bacteria interactions with Germanium Surfaces

NASA Astrophysics Data System (ADS)

Sah, Vasu R.

Supported by a consortium of semiconductor industry sponsors, an international "TIE" project among 5 National Science Foundation (NSF) Industry/university Cooperative Research Centers discovered that a particular extremophilic microbe, Pseudomonas syzygii, persists in the UltraPure Water (UPW) supplies of chip fabrication facilities (FABs) and can bio-corrode germanium wafers to produce microbe-encased optically transparent crystals. Considered as potentially functional "biochips", this investigation explored mechanisms for the efficient and deliberate production of such microbe-germania adducts as a step toward later testing of their properties as sensors or switches in bioelectronic or biophotonic circuits. Recirculating UPW (Ultra-Pure Water) and other purified water, laminar-flow loops were developed across 50X20x1mm germanium (Ge) prisms, followed by subsequent examination of the prism surfaces using Multiple Attenuated Internal Reflection InfraRed (MAIR-IR) spectroscopy, Contact Potential measurements, Differential Interference Contrast Light Microscopy (DICLM), Scanning Electron Microscopy (SEM), Energy Dispersive X-Ray Analysis (EDS), and Electron Spectroscopy for Chemical Analysis (ESCA; XPS). P. syzygii cultures originally obtained from a working FAB at University of Arizona were successfully grown on R2A minimal nutrient media. They were found to be identical to the microbes in stored UPW from the same facility, such microbes routinely capable of nucleation and entrapment within GeO2 crystals on the Ge flow surfaces. Optimum flow rates and exposure times were 1 ml/minute (3.2 s-1 shear rate) for 4 days at room temperature, producing densest crystal arrays at the prism central zones 2-3 cm from the flow inlets. Other flow rates and exposure times have higher shear rate which induces a different nucleation mechanism and saturation of crystal formation. Nucleation events began with square and circular oxide deposits surrounding active attached bacteria, presumably in response to diffusing or spreading metabolic products. They germinated into amorphous germania moats around square crystalline growths incorporating bacteria in the ring centers, sometimes in multiples. Further distances of UPW flow along the prism faces showed both amorphous phase dissolution and crystal "ripening", followed by some crystal shedding and downstream secondary collections of crystal clusters. Microscopic viewing allowed micromanipulator-directed fine wire contacts with individual crystals to assess their electrical characteristics, with limited data due to the ceramic-like refractory properties of the germania crystals. A schematic is presented for the events of nucleation and crystal growth observed, offering the interpretation that Ge oxidation to GeO2 occurs from UV-dissociated water corroding the Ge surface while releasing protons that can drive the metabolic processes keeping the extremophilic organisms alive. It is likely that other extremophilic microorganisms can be similarly entrapped within semiconductor crystals. Further work is now required to discriminate between nucleation by microbial exudates and by the microbial surfaces directly, and to interrogate the crystals grown with advanced electronic and biophotonic probes.

Computational Prediction of the Heterodimeric and Higher-Order Structure of gpE1/gpE2 Envelope Glycoproteins Encoded by Hepatitis C Virus.

PubMed

Freedman, Holly; Logan, Michael R; Hockman, Darren; Koehler Leman, Julia; Law, John Lok Man; Houghton, Michael

2017-04-15

Despite the recent success of newly developed direct-acting antivirals against hepatitis C, the disease continues to be a global health threat due to the lack of diagnosis of most carriers and the high cost of treatment. The heterodimer formed by glycoproteins E1 and E2 within the hepatitis C virus (HCV) lipid envelope is a potential vaccine candidate and antiviral target. While the structure of E1/E2 has not yet been resolved, partial crystal structures of the E1 and E2 ectodomains have been determined. The unresolved parts of the structure are within the realm of what can be modeled with current computational modeling tools. Furthermore, a variety of additional experimental data is available to support computational predictions of E1/E2 structure, such as data from antibody binding studies, cryo-electron microscopy (cryo-EM), mutational analyses, peptide binding analysis, linker-scanning mutagenesis, and nuclear magnetic resonance (NMR) studies. In accordance with these rich experimental data, we have built an in silico model of the full-length E1/E2 heterodimer. Our model supports that E1/E2 assembles into a trimer, which was previously suggested from a study by Falson and coworkers (P. Falson, B. Bartosch, K. Alsaleh, B. A. Tews, A. Loquet, Y. Ciczora, L. Riva, C. Montigny, C. Montpellier, G. Duverlie, E. I. Pecheur, M. le Maire, F. L. Cosset, J. Dubuisson, and F. Penin, J. Virol. 89:10333-10346, 2015, https://doi.org/10.1128/JVI.00991-15). Size exclusion chromatography and Western blotting data obtained by using purified recombinant E1/E2 support our hypothesis. Our model suggests that during virus assembly, the trimer of E1/E2 may be further assembled into a pentamer, with 12 pentamers comprising a single HCV virion. We anticipate that this new model will provide a useful framework for HCV envelope structure and the development of antiviral strategies. IMPORTANCE One hundred fifty million people have been estimated to be infected with hepatitis C virus, and many more are at risk for infection. A better understanding of the structure of the HCV envelope, which is responsible for attachment and fusion, could aid in the development of a vaccine and/or new treatments for this disease. We draw upon computational techniques to predict a full-length model of the E1/E2 heterodimer based on the partial crystal structures of the envelope glycoproteins E1 and E2. E1/E2 has been widely studied experimentally, and this provides valuable data, which has assisted us in our modeling. Our proposed structure is used to suggest the organization of the HCV envelope. We also present new experimental data from size exclusion chromatography that support our computational prediction of a trimeric oligomeric state of E1/E2. Copyright © 2017 American Society for Microbiology.

Computational Prediction of the Heterodimeric and Higher-Order Structure of gpE1/gpE2 Envelope Glycoproteins Encoded by Hepatitis C Virus

PubMed Central

Logan, Michael R.; Hockman, Darren; Koehler Leman, Julia; Law, John Lok Man

2017-01-01

ABSTRACT Despite the recent success of newly developed direct-acting antivirals against hepatitis C, the disease continues to be a global health threat due to the lack of diagnosis of most carriers and the high cost of treatment. The heterodimer formed by glycoproteins E1 and E2 within the hepatitis C virus (HCV) lipid envelope is a potential vaccine candidate and antiviral target. While the structure of E1/E2 has not yet been resolved, partial crystal structures of the E1 and E2 ectodomains have been determined. The unresolved parts of the structure are within the realm of what can be modeled with current computational modeling tools. Furthermore, a variety of additional experimental data is available to support computational predictions of E1/E2 structure, such as data from antibody binding studies, cryo-electron microscopy (cryo-EM), mutational analyses, peptide binding analysis, linker-scanning mutagenesis, and nuclear magnetic resonance (NMR) studies. In accordance with these rich experimental data, we have built an in silico model of the full-length E1/E2 heterodimer. Our model supports that E1/E2 assembles into a trimer, which was previously suggested from a study by Falson and coworkers (P. Falson, B. Bartosch, K. Alsaleh, B. A. Tews, A. Loquet, Y. Ciczora, L. Riva, C. Montigny, C. Montpellier, G. Duverlie, E. I. Pecheur, M. le Maire, F. L. Cosset, J. Dubuisson, and F. Penin, J. Virol. 89:10333–10346, 2015, https://doi.org/10.1128/JVI.00991-15). Size exclusion chromatography and Western blotting data obtained by using purified recombinant E1/E2 support our hypothesis. Our model suggests that during virus assembly, the trimer of E1/E2 may be further assembled into a pentamer, with 12 pentamers comprising a single HCV virion. We anticipate that this new model will provide a useful framework for HCV envelope structure and the development of antiviral strategies. IMPORTANCE One hundred fifty million people have been estimated to be infected with hepatitis C virus, and many more are at risk for infection. A better understanding of the structure of the HCV envelope, which is responsible for attachment and fusion, could aid in the development of a vaccine and/or new treatments for this disease. We draw upon computational techniques to predict a full-length model of the E1/E2 heterodimer based on the partial crystal structures of the envelope glycoproteins E1 and E2. E1/E2 has been widely studied experimentally, and this provides valuable data, which has assisted us in our modeling. Our proposed structure is used to suggest the organization of the HCV envelope. We also present new experimental data from size exclusion chromatography that support our computational prediction of a trimeric oligomeric state of E1/E2. PMID:28148799

The Joint Aerosol-Monsoon Experiment (JAMEX): A Core Element for the Asian Monsoon Year (2008-2009)

NASA Technical Reports Server (NTRS)

Lau, WIlliam K. M.

2007-01-01

The objective of the Joint Aerosol-Monsoon Experiment (JAMEX) is to unravel the physical mechanisms and multi-scale interactions associated with aerosol-monsoon water cycle in the Asian Indo-Paczj?c region towards improved prediction of rainfall in land regions of the Asian monsoon. JAMEX will be planned as a five-year (2007-201 1) multi-national aerosol-monsoon research project, aimed at promoting collaboration, partnership and alignment of ongoing and planned national and international programs. Two coordinated special observing periods (SOP), covering the pre-monsoon (April-May) and the monsoon (June-August) periods is tentatively targeted for 2008 and 2009. The major work on validation and reference site coordination will take place in 2007 through the spring of 2008. A major science workshop is planned after SOP-I1 in 2010. Modeling and satellite data utilization studies will continue throughout the entire period to help in design of the observation arrays and measurement platforms for SOPS. The tentative time schedule, including milestones and research activities is shown in Fig. 1. One of the unique aspects of JAMEX is that it stems from grass-root scientific and societal imperatives, and it bridges a gap in existing national and international research programs. Currently we have identified 10 major national and international projects/programs separately for aerosols and monsoon research planned in the next five years in China, India, Japan, Italy, and the US, that could be potential contributors or partners with JAMEX. These include the Asian-Indo- Pacific Ocean (AIPO) Project and Aerosol Research Project from China, Monsoon Asian Hydro- Atmospheric Science Research and predication Initiative (MAHASRI) from Japan, Continental Tropical Convergence Zone (CTCZ) and Severe Thunderstorm: Observations and Regional Modeling (STORM) from India, Share-Asia from Italy, Atmospheric Brown Cloud (ABC), Pacific Aerosol-Cloud-Dust Experiment (PACDEX), East Asia Study of Tropospheric Aerosol: an International Regional Experiment (East-AIRE), and Radiation Aerosol Joint Observations - Monsoon Experiments over the Gangetic Himalayas Area (Rajo-Megha: dust cloud in Sanskrit) from the US, and Monsoon Asia Integrated Regional Study (MAIR) under the Earth Systems Science Partnership (ESSP) and WCRP. For JAMEX to succeed, it is crucial for an international body, such as CEOP or an organization under WCRP to provide the science oversight, data policy and stewardship, and to promote collaboration and partnership among national programs. It makes eminent sense for WCRP to expand the concept and the prototype proposed by JAMEX to include all monsoon countries to expand AMY08-09 into an International Monsoon Era (2008- 2013). Such an establishment followed by establishment of an international body for science oversight, and data stewardship will go a long way in promoting coordination and connection among various existing monsoon research programs within WCRP, and with burgeoning national programs on monsoon and aerosol research.

The Joint Aerosol-Monsoon Experiment (JAMEX): A Core Element for the Asian Monsoon Year (2008-2009)

NASA Technical Reports Server (NTRS)

Lau, William K.M.

2007-01-01

The objective of the Joint Aerosol-Monsoon Experiment (JAMEX) is to unravel the physical mechanisms and multi-scale interactions associated with aerosol-monsoon water cycle in the Asian Indo-Pacific region towards improved prediction of rainfall in land regions of the Asian monsoon. JAMEX will be planned as a five-year (2007-201 1) multi-national aerosol-monsoon research project, aimed at promoting collaboration, partnership and alignment of ongoing and planned national and international programs. Two coordinated special observing periods (SOP), covering the pre-monsoon (April-May) and the monsoon (June-August) periods is tentatively targeted for 2008 and 2009. The major work on validation and reference site coordination will take place in 2007 through the spring of 2008. A major science workshop is planned after SOP-I1 in 2010. Modeling and satellite data utilization studies will continue throughout the entire period to help in design of the observation arrays and measurement platforms for SOPS. The tentative time schedule, including milestones and research activities is shown in Fig. 1. One of the unique aspects of JAMEX is that it stems from grass-root scientific and societal imperatives, and it bridges a gap in existing national and international research programs. Currently we have identified 10 major national and international projects/programs separately for aerosols and monsoon research planned in the next five years in China, India, Japan, Italy, and the US, that could be potential contributors or partners with JAMEX. These include the Asian-Indo- Pacific Ocean (AIPO) Project and Aerosol Research Project from China, Monsoon Asian Hydro- Atmospheric Science Research and predication Initiative (MAHASRI) from Japan, Continental Tropical Convergence Zone (CTCZ) and Severe Thunderstorm: Observations and Regional Modeling (STORM) from India, Share-Asia from Italy, Atmospheric Brown Cloud (ABC), Pacific Aerosol-Cloud-Dust Experiment (PACDEX), East Asia Study of Tropospheric Aerosol: an International Regional Experiment (East-AIRE), and Radiation Aerosol Joint Observations - Monsoon Experiments over the Gangetic Himalayas Area (Rajo-Megha: dust cloud in Sanskrit) from the US, and Monsoon Asia Integrated Regional Study (MAIR) under the Earth Systems I Science Partnership (ESSP) and WCRP. For JAMEX to succeed, it is crucial for an international body, such as CEOP or an organization under WCRP to provide the science oversight, data policy and stewardship, and to promote collaboration and partnership among national programs. It makes eminent sense for WCRP to expand the concept and the prototype proposed by JAMEX to include all monsoon countries to expand AMY08-09 into an International Monsoon Era (2008- 2013). Such an establishment followed by establishment of an international body for science oversight, and data stewardship will go a long way in promoting coordination and connection among various existing monsoon research programs within WCRP, and with burgeoning national programs on monsoon and aerosol research.

Crush-2: Communicating research through a science-art collaboration

NASA Astrophysics Data System (ADS)

Mair, K.; Barrett, N.; Schubnel, A. J.; Abe, S.

2011-12-01

Historically, the Earth's environment and dynamics have influenced and inspired the arts. Art in turn is a powerful vehicle for expression of the natural world. It lends itself to public presentation in many forms and appeals to a diverse audience. Science-art collaborations provide a unique opportunity to connect with the public by taking science out of the classroom and into museums, galleries and public spaces. Here we investigate the use of contemporary digital sound-art in communicating geoscience research to the general public through the installation Crush-2. Crush-2, is an interactive sound-art installation exploring the microscopic forces released during the crushing of rock. Such processes have a strong influence on the sliding behaviour and hence earthquake potential of active faults. This work is a collaboration between sound artist and composer Natasha Barrett (Oslo) and geoscientists Karen Mair (University of Oslo), Alexandre Schubnel (Ecole Normale Superieure, Paris) and Steffen Abe (RWTH Aachen). Using a sonification technique, Barrett has assigned sound recorded from rocks, of different pitches, timbres and durations, to individual fracturing events produced in our 3D fault fragmentation models and laboratory rock breaking experiments. In addition, ultrasonic acoustic emissions recorded directly in the laboratory are made audible for our hearing and feature in the work. The installation space comprises a loudspeaker array and sensor enabled helmet with wireless headphones. By wearing the helmet, moving and listening, the audience explores an artistic interpretation of the scientific data in physical space. On entering the space, one is immediately immersed in a 3D cacophony of sound. Sustained or intermittent pings, burrs, plops and tingles jostle for position in our heads whilst high pitched delicate cascades juxtapose with deep thunder like rumbles. Depending on the user's precise path through the soundscape, the experience changes accordingly, so every visitor has a unique sound adventure. The experience is intensely engaging, playful and yet a little unsettling and provides a truly unique way to explore our scientific data and present geoscience research to the public. Crush-2 has featured in an exhibition on Sonic Interaction Design at the Norwegian Museum of Science, Technology and Medicine, Oslo, Norway (27 May - 21 August 2011) and forms part of a solo exhibition by Barrett at Galleri ROM, Oslo in fall 2011. Visitor feedback from the Museum exhibition suggests that users were initially attracted to the exhibit by its interactive 'hands-on' nature and dramatic sounds, but as they 'explored' the soundspace, became curious to ask questions about the underlying science. The concept of using sound rather than visual gives an unusual and therefore highly memorable experience. This science-art collaboration provides a novel and highly enjoyable way to present our work to the public - that is particularly attractive to youngsters. Visitors to this poster presentation will be able to explore the Crush-2 soundscape using a laptop and headphone interactive mode.

Rising CO2 widens the transpiration-photosynthesis optimality space

NASA Astrophysics Data System (ADS)

de Boer, Hugo J.; Eppinga, Maarten B.; Dekker, Stefan C.

2016-04-01

Stomatal conductance (gs) and photosynthetic biochemistry, typically expressed by the temperature-adjusted maximum rates of carboxylation (V cmax) and electron transport (Jmax), are key traits in land ecosystem models. Contrary to the many approaches available for simulating gs responses, the biochemical parameters V cmax and Jmax are often treated as static traits in ecosystem models. However, observational evidence indicates that V cmax and Jmax respond to persistent changes in atmospheric CO2. Hence, ecosystem models may be improved by incorporating coordinated responses of photosynthetic biochemistry and gs to atmospheric CO2. Recently, Prentice et al. (2014) proposed an optimality framework (referred to as the Prentice framework from here on) to predict relationships between V cmax and gs based on Fick's law, Rubisco-limited photosynthesis and the carbon costs of transpiration and photosynthesis. Here we show that this framework is, in principle, suited to predict CO2-induced changes in the V cmax -gs relationships. The framework predicts an increase in the V cmax:gs-ratio with higher atmospheric CO2, whereby the slope of this relationship is determined by the carbon costs of transpiration and photosynthesis. For our empirical analyses we consider that the carbon cost of transpiration is positively related to the plant's Huber value (sapwood area/leaf area), while the carbon cost of photosynthesis is positively related to the maintenance cost of the photosynthetic proteins. We empirically tested the predicted effect of CO2 on the V cmax:gs-ratio in two genotypes of Solanum dulcamara (bittersweet) that were grown from seeds to maturity under 200, 400 and 800 ppm CO2 in walk-in growth chambers with tight control on light, temperature and humidity. Seeds of the two Solanum genotypes were obtained from two distinct natural populations; one adapted to well-drained sandy soil (the 'dry' genotype) and one adapted to poorly-drained clayey soil (the 'wet' genotype). Measurements of gs and V cmax were obtained with a portable photosynthesis system. Our empirical results support the prediction that the V cmax:gs-ratio increases with higher CO2 in both Solanum genotypes. The 'dry' genotype revealed a significantly higher Huber value and lower V cmax than the 'wet' genotype at each CO2 growth level. Moreover, we found that the down-regulation of V cmax under higher CO2 was stronger in the 'dry' genotype than in the 'wet' genotype, whereas no change in the Huber value was observed between CO2 levels. Consistent with the theoretical trade-off between the resulting costs of transpiration and photosynthesis, we found that the CO2-induced increase in the V cmax:gs-ratio was stronger in the 'wet' genotype than in the 'dry' genotype. Given the divergence of V cmax:gs relationships observed, we conclude that rising atmospheric CO2 may widen the V cmax - gs optimality space available for plants to achieve an optimal trade-off between photosynthesis and transpiration. References Prentice, I. C., Dong, N., Gleason, S. M., Maire, V. and Wright, I. J.: Balancing the costs of carbon gain and water transport: testing a new theoretical framework for plant functional ecology, Ecol. Lett., 17(1), 82-91, 2014.

Trace element mobility at the slab-mantle interface: constraints from "hybrid

NASA Astrophysics Data System (ADS)

Marocchi, M.; Tropper, P.; Mair, V.; Bargossi, G. M.; Hermann, J.

2009-04-01

Subduction mélanges and hybrid rocks are considered, together with mafic rocks, metasediments and serpentinite as an important volatile-bearing portion of subducting slabs (cf. Spandler et al., 2008 and references therein; Miller et al., 2009). In particular, metasomatic rocks occurring in exhumed HP mélanges have recently attracted growing interest for two main reasons: i) metasomatic rocks forming at the interface between ultramafic and crustal rocks of subducting slabs constitute new bulk compositions which can affect the redistribution of major and trace elements and modify the composition of slab fluids moving to the mantle wedge and ii) these mineral assemblages, consisting mainly of hydrous phases can potentially store and transport water at great depth in subduction zones. Ultramafic rocks belonging to the Hochwart peridotite (Ulten Zone, central-eastern Italian Alps) preserve a series of metasomatic mineral zones generated by infiltration of hydrous fluids/melts, which occurred at the gneiss-peridotite interface (Tumiati et al., 2007; Marocchi et al., 2009). The peridotite body of Mt. Hochwart represents an almost unique occurrence where subduction-related mantle metasomatism can be studied on an outcrop scale. The ultramafic body consists of metaperidotites exposed as a hectometre-size lens along a steep gully, associated to monomineralic zones that developed at the contact between the peridotite body and the garnet-bearing gneiss country rocks. The formation of the metasomatic zones composed exclusively of hydrous phases involved extensive H2O-metasomatism as already documented for the Ulten peridotites (Scambelluri et al., 2006; Marocchi et al., 2007). Whole-rock geochemistry and trace element composition of hydrous phases (phlogopite and amphibole) in different metasomatic zones indicate mobility of many elements, including elements such as Ta, which are considered to have scarce mobility in fluids. Trace element composition of accessory minerals in the phlogopite-rich zone suggests that the trace element signature of subduction zone fluids may be fractionated in this zone. The progressive depletion in some trace elements (LREE and LILE) and enrichment in Li from the gneiss towards the peridotite suggests a strong influence of bulk composition on the trace element budget of hydrous minerals. Since these metasomatic zones can be representative of the processes occurring at the slab-mantle interface, we can infer that metasomatic reactions between slab-derived fluids and ultramafic mantle wedge will follow a specific series of reactions and create mineral zones similar to those observed in this study. Despite the mobility of many elements, in the trace element profiles for amphibole and phlogopite across the different zones, we observe a rapid decrease even of the "fluid mobile" element contents within the reaction zone. With the exception of Li, we assist to an abrupt decrease of most of trace element concentrations going towards the peridotite side contact. Thus, according to the present study, it is not likely that the "crustal trace element signature" (i.e. LILE and LREE-enriched) could be able to travel far into the mantle. Our results further favour the evidence that the primary composition of subduction zone fluids reaching the source region of arc magmas is substantially modified by metasomatic reactions occurring in the mantle wedge. Furthermore, we underline that metasomatic rocks such as those observed at Mt. Hochwart are potentially able to transport H2O and other trace elements to greater depths in subduction zones. References: Marocchi M, Hermann J, Morten L (2007)-Lithos 99: 85-104. Marocchi M, Mair V, Tropper P, Bargossi GM (2009)-Mineral Petrol, in press Miller DP, Marschall RH, Schumacher JC (2009)- Lithos 107: 53-67. Scambelluri M, Hermann J, Morten L, Rampone E (2006)- Contrib Mineral Petrol 151:372-394. Spandler CJ, Hermann J, Faure K, Mavrogenes JA, Arculus RJ (2008)- Contrib Mineral Petrol 155: 181-198. Tumiati S, Godard G, Martin S, Klőtzli U, Monticelli D (2007)- Lithos 94: 148-167.

Dual-sensor mapping of mass balance on Russia's northernmost ice caps

NASA Astrophysics Data System (ADS)

Nikolskiy, D.; Malinnikov, V.; Sharov, A.; Ukolova, M.

2012-04-01

Mass balance of Russia's northernmost ice caps is poorly known and scarcely mapped. Thorough information about glacier fluctuations in the outer periphery of Russian shelf seas is both lacking and highly desired since it may constitute the relevant benchmark for judging and projecting climate change impacts in the entire Arctic. The present study is focussed on geodetic measurements and medium-scale mapping of the mass balance on a dozen insular ice caps, some large and some smaller, homogeneously situated along the Eurasian boundary of Central Arctic Basin. The study region extends for approx. 2.200 km from Victoria and Arthur islands in the west across Rudolph, Eva-Liv, Ushakova, Schmidt and Komsomolets islands in the north to Bennett and Henrietta islands in the east thereby comprising the most distant and least studied ice caps in the Russian Arctic. The situation of insular ice masses close to the edge of summer minimum sea ice proved helpful in analysing spatial asymmetry of glacier accumulation signal. The overall mapping of glacier elevation changes and quantification of mass balance characteristics in the study region was performed by comparing reference elevation models of study glaciers derived from Russian topographic maps 1:200,000 (CI = 20 or 40 m) representing the glacier state as in the 1950s-1960s with modern elevation data obtained from satellite radar interferometry and lidar altimetry. In total, 14 ERS and 4 TanDEM-X high-quality SAR interferograms of 1995/96 and 2011 were acquired, processed in the standard 2-pass DINSAR manner, geocoded, calibrated, mosaicked and interpreted using reference elevation models and co-located ICESat altimetry data of 2003-2010. The DINSAR analysis revealed the existence of fast-flowing outlet glaciers at Arthur, Rudolph, Eva-Liv and Bennett islands. The calculation of separate mass-balance components is complicated in this case because of generally unknown glacier velocities and ice discharge values for the mid-20th century. Hence only net balance values were determined for those ice caps. Other ice caps belong to the category of slow-moving or passive glaciers with simpler estimation of mass balance characteristics. Glacier elevation changes on several study glaciers were repeatedly determined with ICESat GLA06 data releases 28 and 29, and statistically compared. The root mean square difference between test determinations was given as less than 1 m rms and the lidar oversaturation effect was neglected in further work. Modern outlines of maritime glacier faces were corrected with the high-resolution optical quicklook imagery obtained from WorldView and QuickBird satellites. The research revealed the reduction of glacier area and general lowering of the glacier surface on most ice caps. Several new islets were discovered due to the glacial retreat in northern parts of Eva-Liv, Schmidt and Komsomolets islands. The cumulative mass budget in the study region remained negative while individual rates of volume change varied from -0.09 km3/a to +0.04 km3/a. Positive values of average mass balance with the maximum accumulation signal of approx. 0.9 m/a were determined on Ushakova, Schmidt and Henrietta ice caps. The results were represented in the form of glacier change maps with 50-m grid at 1:200,000 scale. The vertical accuracy of glacier change maps proved on several small and large ice caps was given as ± 0.3 m/a rms. Several resultant maps can be accessed at http://dib.joanneum.at/MAIRES/index.php?page=products. Further sub-regional comparison of glacier change maps with climatological, oceanographic, rheological, gravimetric and other ground-truth and EO data showed that spatial changes of insular glaciers are closely dependent on the frequency of precipitation events, water depth, sea ice regime, polynyas and gravity anomalies nearby. New opportunities for validating mass changes on the largest study glaciers and determining their bulk density are expected from the next release of GOCE gravity field data and CryoSat-2 radar altimetry data announced by ESA for 2012.

Influence of elastomeric seal plate surface chemistry on interface integrity in biofouling-prone systems: Evaluation of a hydrophobic "easy-release" silicone-epoxy coating for maintaining water seal integrity of a sliding neoprene/steel interface

NASA Astrophysics Data System (ADS)

Andolina, Vincent L.

The scientific hypothesis of this work is that modulation of the properties of hard materials to exhibit abrasion-reducing and low-energy surfaces will extend the functional lifetimes of elastomeric seals pressed against them in abrasive underwater systems. The initial motivation of this work was to correct a problem noted in the leaking of seals at major hydropower generating facilities subject to fouling by abrasive zebra mussel shells and extensive corrosion. Similar biofouling-influenced problems can develop at seals in medical devices and appliances from regulators in anesthetic machines and SCUBA diving oxygen supply units to autoclave door seals, injection syringe gaskets, medical pumps, drug delivery components, and feeding devices, as well as in food handling equipment like pasteurizers and transfer lines. Maritime and many other heavy industrial seal interfaces could also benefit from this coating system. Little prior work has been done to elucidate the relationship of seal plate surface properties to the friction and wear of elastomeric seals during sliding contacts of these articulating materials, or to examine the secondary influence of mineralized debris within the contacting interfaces. This investigation utilized the seal materials relevant to the hydropower application---neoprene elastomer against carbon steel---with and without the application of a silicone-epoxy coating (WearlonRTM 2020.98) selected for its wear-resistance, hydrophobicity, and "easy-release" capabilities against biological fouling debris present in actual field use. Analytical techniques applied to these materials before and after wear-producing processes included comprehensive Contact Angle measurements for Critical Surface Tension (CA-CST) determination, Scanning Electron Microscopic inspections, together with Energy Dispersive X-ray Spectroscopy (SEM-EDS) and X-Ray Fluorescence (XRF) measurements for determination of surface texture and inorganic composition, Multiple Attenuated Internal Reflection (MAIR-IR) and Microscopic Infrared Spectroscopy for organic surface compositional details, light microscopy for wear area quantification, and profilometry for surface roughness estimation and wear depth quantification. Pin-on-disc dynamic Coefficient of Friction (CoF) measurements provided data relevant to forecasts of seal integrity in dry, wet and biofouling-influenced sliding contact. Actual wear of neoprene seal material against uncoated and coated steel surfaces, wet and dry, was monitored after both rotary and linear cyclic wear testing, demonstrating significant reductions in elastomer wear areas and depths (and resultant volumes) when the coating was present. Coating the steel eliminated a 270% increase in neoprene surface area wear and an 11-fold increase in seal abrasive volume loss associated with underwater rusting in rotary experiments. Linear testing results confirm coating efficacy by reducing wear area in both loading regimes by about half. No coating delamination was observed, apparently due to a differential distribution of silicone and epoxy ingredients at the air-exposed vs. steel-bonded interfaces demonstrated by IR and EDS methods. Frictional testing revealed higher Coefficients of Friction (CoF) associated with the low-speed sliding of Neoprene over coated rather than uncoated steel surfaces in a wet environment, indicating better potential seal adhesion between the hydrophobic elastomer and coating than between the elastomer and intrinsically hydrophilic uncoated steel. When zebra mussel biofouling debris was present in the articulating joints, CoF was reduced as a result of a water channel path produced between the articulating surfaces by the retained biological matter. Easier release of the biofouling from the low-CST coated surfaces restored the seal integrity more rapidly with further water rinsing. Rapid sliding diminished these biofouling-related differences, but revealed a significant advantage in reducing the CoF of the elastomer-on-coating couples to less than 50% of the elastomer-on-steel couples in all conditions. These consolidated results indicate that general improvements in maintenance of seal integrity and functional lifetimes for other sliding joints exposed to potentially abrasive biofouling media can be obtained by coating the more-rigid seal-plate surfaces with low-CST, hydrophobic, wear-resistant materials such as the silicone-epoxy system characterized here.

Foreword

NASA Astrophysics Data System (ADS)

Boutron, Claude; Ferrari, Christophe

2003-05-01

It is our pleasure to host the “12th International Conference on Heavy Metals in the Environment” in the city of Grenoble (France), in the heart of the Alps. This is the latest in this successful and popular series of conferences, which previously took place in Toronto (1975), London (1979), Amsterdam (1981), Heidelberg (1983), Athens (1985), New Orleans (1987), Geneva (1989), Edinburgh (1991), Hamburg (1995) and Ann Arbor (2000). Grenoble is one of the major research centres in Europe, with a very large number of researchers in various fields, especially Physics and Chemistry, Mathematics and Computer Sciences, Biology and Medicine, and Earth and Universe Sciences. There are two internationally recognized scientific Universities: Université Joseph Fourier (UJF), and Institut National Polytechnique de Grenoble (INPG). There are also the main research laboratories of various French and European governmental organizations such as Commissariat à l'énergie Atomique (CEA), Centre National de la Recherche Scientifique (CNRS), Institut Laue Langevin (ILL), European Synchrotron Radiation Facility (ESRF) and Institut de Radio-Astronomie Millimètrique (IRAM). Finally, there are various hi-tech companies such as Hewlett Packard, ST Microelectronics, Schneider Electric and SGS-Thomson. There is a long tradition of research in the field of heavy metals in the environment, especially at the Laboratoire de Glaciologie et Géophysique de l'Environnement and at the Laboratoire de Géophysique Interne et Tectonophysique. These two volumes contain papers presented both in oral and poster sessions. The papers are not organised in order of presentation, but according to the alphabetical order of the family name of the first author of each paper. It is our pleasure to thank the authors for the excellent level of their submissions. We are also particularly grateful to Isabelle Houlbert and Laurence Castagné for editorial assistance. We would like to take this opportunity to thank the members of the organising committee and Jerome Nriagu (chairman of the 11th Conference) for helping us to put together the program of this conference. Also, very special thanks are due to Christine Echevet for her continuous and expert efforts to make the Grenoble Conference a success, and to various members of the Laboratoire de Glaciologie et Géophysique de l'Environnement, especially Jocelyne Roquemora. Special thanks are also due to the President of Grenoble Alpes Métropole and the Mayor of the City of Grenoble. Finally, we are very grateful to the various co-sponsors of the conference, especially the Centre National de la Recherche Scientifique (CNRS), the University Joseph Fourier of Grenoble, the Ministère des Affaires Étrangères, the Ministère de l'Écologie et du Développement Durable, the Agence de l'Environnement et de la Maîtrise de l'Énergie (ADEME), Grenoble Alpes Métropole (La Métro), the City of Grenoble, the Region Rhône-Alpes, the Conseil Général de l'Isère, the Association Minéraux, Métaux non ferreux, Santé, Environnement (AMSE), the University of Michigan and the Société Hydrotechnique de France (SHF). Claude BOUTRON and Christophe FERRARI - Conference Co-Chairmen 12th International Conference on Heavy Metals in the Environment, Grenoble, France, 26-30 May 2003 Préface C'est un grand plaisir pour nous d'accueillir la “12e Conférence Internationale sur les Métaux Lourds dans l'Environnement en France Grenoble, au coeur des Alpes. Cette conférence est la 12e du nom, après celles qui ont eu lieu avec beaucoup de succès à Toronto (1975), Londres (1979), Amsterdam (1981), Heidelberg (1983), Athènes (1985), La Nouvelle Orléans (1987), Genève (1989), Edimbourg (1991), Hambourg (1995) et Ann Arbor (2000). Grenoble est l'une des principales ville d'Europe pour la recherche scientifique avec un très grand nombre de chercheurs dans des domaines trés variés, notamment en Physique et Chimie, Mathématiques et Informatique, Biologie et Médecine, et Sciences de la Terre et de l'Univers. Il y a deux grandes Universités Scientifiques de renommée internationale: l'Université Joseph Fourier (UJF) et l'Institut National Polytechnique de Grenoble (INPG). Il y a aussi d'importants laboratoires de différents organismes publics français et européen comme le Commissariat à l'Énergie Atomique (CEA), le Centre National de la Recherche Scientifique (CNRS), l'Institut Laue Langevin (ILL), l'European Synchrotron Radiation Facility (ESRF) et l'Institut de Radio-Astronomie Millimètrique (IRAM). C'est aussi le lieu d'implantation de nombreuses sociétés de haute technologie comme Hewlett Packard, ST Microelectronics, Schneider Electric and SGS-Thomson. Il a à Grenoble une longue tradition de recherches dans le domaine des métaux lourds dans l'environnement, notamment au Laboratoire de Glaciologie et Géophysique de l'Environnement et au Laboratoire de Géophysique Interne et Tectonophysique. Ces deux volumes regroupent les articles issus de communication présentées aussi bien au cours des sessions orales que des sessions posters. Ces articles sont classés selon l'ordre alphabétique du nom de famille du premier auteur. Nous remercions vivement les auteurs pour l'excellente qualité de ces articles. Nous remercions aussi tout particulièrement Isabelle Houlbert et Laurence Castagné pour leur collaboration. Nous aimerions aussi remercier les membres du comité d'organisation ainsi que Jerome Nriagu (organisateur de la 11e conférence) pour l'aide apportée à l'organisation de cette conférence. Nous remercions aussi tout spécialement Christine Echevet qui n'a pas ménagé ses efforts pour faire de cette conférence un succés, ainsi que de nombreux collègues du Laboratoire de Glaciologie et Géophysique de l'Environnement, en particulier Jocelyne Roquemora. Nous tenons également à remercier le Président de Grenoble Alpes Métropole et le Maire de la Ville de Grenoble pour leur soutien. Cette conférence n'aurait pas pu avoir lieu sans le soutien financier de nombreux organismes: le Centre National de la Recherche Scientifique (CNRS), l'Université Joseph Fourier de Grenoble, le Ministère des Affaires Étrangères, le Ministère de l'Écologie et du Développement Durable, l'Agence de l'Environnement et de la Maîtrise de l'Énergie (ADEME), Grenoble Alpes Métropole (La Métro), la Ville de Grenoble, La Région Rhône-Alpes, le Conseil Général de l'Isère, l'Association Minéraux, Métaux non ferreux, Santé, Environnement (AIMSE), l'Université du Michigan et la Société Hydrotechnique de France (SHF). Claude BOUTRON et Christophe FERRARI Co-organisateurs de la 12e Conférence Internationale sur les Métaux Lourds dans l'Environement, Grenoble, France, 26-30 Mai 2003

SUSTAINABILITY EFFECTS OF Crotalaria juncea L. AND Crotalaria spectabilis ROTH ON SOIL FERTILITY AND SOIL CONSERVATION

NASA Astrophysics Data System (ADS)

László, Márton, ,, Dr.

2010-05-01

Sustainable agriculture is defined as the successful management of resources for agriculture to satisfy changing human needs while maintaining or enhancing the quality of the environment and conserving natural resources. A sustained increase of agricultural production becomes a great possibility for international community. In this process a green manure crops application for example crotalaria get a new chance for improvement process on soil fertility and soil conservation. Field experiment was carried out on a calcareous chernozem soil (Experiment station Nagyhörcsök of RISSAC-HAS) in partly of experiment series (3 years) at Hungary in 1998. The soil with about 20% clay, 3% humus, 5% CaCO3 in its ploughed layer. To ensure a sufficient macro and micronutrient supply in the whole experiment, 100 kg N, 100 kg P2O5 and 100 kg K2O were given hectare. The Crotalaria juncea L. and Crotalaria spectabilis ROTH were applied with 2 replications. Each plot has an area of 45 m2 with 230-230 individual plants. In vegetation grown period were measured green and dry matter yield. The soil and plant samples were analysed for the macro and microelements contents. The main results achieved in 1998 are summarized as follows: 1. The green matter yield at before flowering reached 63.8 t ha-1 in case of Crotalaria juncea L. 2. Total dry matter yield at harvest (without roots) fluctuated between 9.6 and 17.0 t ha-1, depending on the crotalaria species. 3. The average of element concentration (including stems, leaves of Crotalaria juncea L. and Crotalaria spectabilis ROTH) before flowering reached to 3.2 % N, 2.3 % Ca, 1.3 % K, 0.39 % Mg, 0.22 % P and 0.24 % S. The content of Al and Fe total 14 - 25, while that of Sr, Mn, Na, B and Ba 2 - 6 ppm in dry matter. The Zn, Cu, Mo, Cr, Se, Ni, As, Pb, Cd and Co concentration did not reach here the value of 1 ppm. 4. The average of biological activated element uptake (including stems, leaves of Crotalaria juncea L. and Crotalaria spectabilis ROTH) before flowering amounted to 368 kg N, 252 kg Ca, 96 kg K, 45 kg Mg, 30 kg P and 27 kg S ha-1. The content of Al and Fe total 2 - 3, while that of Ba, Zn, B, Cu, Na, Mn and Sr 180 - 650 g ha-1. The Co, Cd, As, Pb, Ni, Se, Cr and Mo concentration did not reach here the value of 10 g ha-1. By this means this green manures should have a vary important role in the design of rotations for sustainable agriculture. Not only do they help to retain and accumulate nitrogen and other nutrients, thus reducing leaching losses, they also maintain ground cover, protected the soil from erosion, and can make a contribution to pest and weed control. Key words: Sustainable agriculture, soil fertility, soil conservation, green manure, Crotalaria juncea L., Crotalaria spectabilis ROTH. INTRODUCTION Sustainable agriculture is defined as the successful management of resources for agriculture to satisfy changing human needs while maintaining or enhancing the quality of the environment and conserving natural resources. A sustained agricultural production can be achieved by a proper use of soil resources, which includes the maintance or the enhancement of soil fertility (Christian and Kurt 1996). The term soil fertility is cast here to encompass not only essential plant nutrients but also aspects of soil structure, including water holding capacity, soil organic matter content and biological activity that influence both the efficiency of use and sustainability of the resources. All these attributes are interrelated and contribute together to the soil potential productivity or fertility (Kádár 1992, Németh 1996). From that perspective, soil fertility can be assessed as a capital stock, which will produce interests when properly used , and yet will be eroded by a consumptive use. It is necessary to make here a clear distinction between actions aiming at the regeneration of the soil capital, i.e., "recapitalization of soil fertility" and actions, such as maintance of enhanced soil fertility. The first set of actions, such as lime application, erosion control measures, and chiseling of sub-surfacehardpan, are "one time" investments which often benefit not only the farming communities but also society at large, improved water quality, food security, etc. Costsharing among all beneficiaries in society should be the carefully thought about. The second set of actions relates to the protection and or maintance of the enhanced soil capital, through balanced plant nutrition applications, appropriate crop rotations, etc., the cost of which have definitely to be fully supported by farmers. However, farmers will bear these costs only if the economic, institutional and legal frame conditions are favourable, i. e. when there are enough incentives to reinvest instead of consuming the capital stock. Possible interventions to enhance soil fertility management, therefore, range from policies affecting farm gate prices, security of land use, access to credit, access to markets, relations between input and output prices, fertilizer supply and distribution right through to access to information on improved soil fertility management (soil organic matter management, prevention of nutrient losses by run off - leaching, efficient use of fertilizers). This cannot be obtained with isolated measures and projects but requires a coherent strategy for soil fertility enhancement and sustainable soil management (Janssen 1993). The implementation of such a strategy, finally, requires a strong commitment of national governments which was often lacking in the past, as well as support from the international community. Neither human needs are satisfied, especially food demands, nor are the natural resources protected. Gross plant production was decreased with twenty percent in the last 10 years. Morever, this inadequate rate is obtained partly by degradation of the environment resulting from overexploiting of soil resources. The reversal of this trend and a sustained increase of agricultural production becomes a great possibility for Hungary and the international community. In this process a green manure crop application for example crotalaria get a great chance for improvement process on soil fertility and soil coservation (Lazányi 1998, Márton 1999). This paper briefly outlines the major effects of Crotalaria juncea L. and Crotalaria spectabilis ROTH on soil fertility and soil conservation. MATERIAL AND METHOD Field experiment were carried out on a calcareous chernozem soil at Hungary (Experiment station Nagyhörcsök of Research Iinstitute for Soil Science and Agricultural Chemistry of the Hungarian Academy of Sciences) in partly of experiments series (3 years) in 1998. The soil with about 20% clay, 3% humus, 5 Ca CO3 in its ploughed layer. To ensure a sufficient macronutrient supply in the whole experiment, 100 kg N, 100 kg P2O5 and 100 kg K2O are given hectare in autumn of 1997. The Crotalaria juncea L. and Crotalaria spectabilis ROTH were applied with 2 replications. Each plot has an area of 45 m2 with 230-230 individual plants. Winter wheat was grown as a green crop (preceding the main product of a field) with commonly used agrotechnic. Soil samples are taken before the experiment set up on 27.04. 1998. Each composite sample consist of 20 subsamples drawn from the plow layer of each plot. Plant samples are taken during the vegetation period at least twice (20.07. 1998 and 02.11. 1998), using 5-5 plants per plot randomly. Plant material is dried, milled and digested in teflon bombs using cc.HNO3+cc.H2O2 and their total macro and microelement content with the exception of N was determined by ICP technics (JY 238 ULTRACE). N-content were determined by titration of hypobromit after the cc.H2SO4+cc.H2O2 digestion, N-NO3 content were determined by Griess-Ilosvai reaction after water extraction. Soil samples are extracted by ammonium-acetate+EDTA (Lakanen and Erviö 1971) and their available element content with the exception of N is mesaured using the ICP technics. N-contents (NO3+NH4) were determined by Bremner-Keeney method (1966). Dates of experiment were estimated by MANOVA. The main goal of the whole researh program was described erlier (Márton 1999). Easily soluble nitrogen, phosphorus and potassium content of soil on ploughed soil layer are presented in Table 1. RESULTS AND DISCUSSION The green matter yield at before flowering reached 63.8 t ha-1 in case of Crotalaria juncea L. Total dry matter yield at harvest (without roots) fluctuated between 9.6 and 17.0 t ha-1, depending on the crotalaria treatment (Table 2). Chemical composition were different between crotalaria species before flowering. The average of element concentration (including stems, leaves of Crotalaria juncea L. and Crotalaria spectabilis ROTH) before flowering reached to 3.2 % N, 2.3 % Ca, 1.3 % K, 0.39 % Mg, 0.22 % P and 0.24 % S. The content of Al and Fe total 14 - 25, while that of Sr, Mn, Na, B and Ba 2 - 6 ppm in dry matter. The Zn, Cu, Mo, Cr, Se, Ni, As, Pb, Cd and Co concentration did not reach here the value of 1 ppm (Table 3). The average of biological activated element uptake (including stems, leaves of Crotalaria juncea L. and Crotalaria spectabilis ROTH) before flowering amounted to 368 kg N, 252 kg Ca, 96 kg K, 45 kg Mg, 30 kg P and 27 kg S ha-1. The content of Al and Fe total 2 - 3, while that of Ba, Zn, B, Cu, Na, Mn and Sr 180 - 650 g ha-1. The Co, Cd, As, Pb, Ni, Se, Cr and Mo concentration did not reach here the value of 10 g ha-1 (Table 4). By this means this green manures should have been a very important role in the design of rotations for sustainable agriculture. Not only do they help to retain and accumulate nitrogen and other nutrients, thus reducing leaching losses, they also maintain ground cover, protected the soil from erosion, and can make a contribution to pest and weed control. For this reason based on earlier results crotalaria has the following charasteristics: nitrogen accumulation - maintenance-, reduction of nutrient leaching (N, Ca, K), reduction of soil erosion, improved utilisation of rainfall (water), shading of soil, aeration of soil, weed control and pest control. Crotalaria crops also provide cost reduction as a result of lower fertiliser use, improved nutrient utilisation, easier cultivation, reduced plant protection requirements. To a certain extent that this plant roots are involved in this process and green manure contribute to the biological stabilisation of soil structure following mechanical cultivation. Depending on soil type, the roots of crotalaria can extend down to 1.5-2 m according to earlier publications of autor. This result are presented that crotalaria has great advantagens in green manuring. ACKNOWLEDGEMENTS This research was supported by Research Institute for Soil Science and Agricultural Chemistry of the Hungarian Academy of Sciences, Budapest and Natinal Vegetable Crops Research Center, Brazília REFERENCES Bremner, J.M., Keeney, D.R. 1966. Determination and isotope-ratio analysis of different forms of nitrogen in soils. 3. Exchangeable ammonium, nitrate and nitrite by extraction destillation methods. Soil Sci. Soc. Amer. Proc. 30:577-582. Christian, P., Kurt, G.S 1996. The role of soil fertility in sustainable agriculture with special reference to Sub-Saharan Africa. Entwicklung. 4, 3-6. Janssen., B.H. 1993. Integrated nutrient management: use of organic and mineral fertilizers. In: Reulen and Prins, 1993. Kádár, I. 1992. Principles and methods in plant nutrition. RISSAC-HAS, Budapest. Lakanen, E. and Erviö, R. 1971. A comparison of eight extractants for the determination of plant available micronutrients in soil. Acta Agr. Fenn. 123. 223-232. Lazányi, J. 1998. Use of alternative crops for forage production and soil conservation. Research Center of Debrecen Agricultural University, Debrecen. Márton, L. 1999. From a new alternative crops (Crotalaria juncea L.) production and disease. Agroforum 5, 64. Németh, T. 1996. Organic matter and nitrogen content of soils. RISSAC-HAS, Budapest. Table 1. Easily soluble nitrogen, phosphorus and potassium content of calcareous chernozem soil in ploughed layer. Nagyhörcsök at spring of 1998. Easily soluble N,P,K (ppm) Ploghed layer N AL-P2O5 AL-K2O (cm) NO3 NH4 0-20 15.7 21.0 108.9 180.5 20-40 8.7 17.5 59.8 111.5 Average 12.2 19.2 84.3 146 Table 2. Green and dry matter production of Crotalaria juncea L. and Crotalaria spectabilis ROTH on calcareous chernozem soil. Nagyhörcsök, 1998 Treatment Yield before flowering 20.07. 1998. Green matter t ha-1 Dry matter t ha-1 Dry matter % Crotalaria ju. L. 63.8 13.1 20.6 Crotalaria sp. ROTH 39.8 9.3 23.3 LSD5% 4.5 2.0 0.5 Average 51.8 11.2 21.9 Yield at harvest 02.11. 1998. Crotalaria ju. L. 48.8 17.0 35.0 Crotalaria sp. ROTH 25.4 9.6 38.0 LSD5% 3.0 2.5 1.5 Average 37.1 13.3 36.5 Table 3. Chemical composition of Crotalaria juncea L. and Crotalaria spectabilis ROTH before flowering on calcareous chernozem soil. Nagyhörcsök, 1998 Element Concentr. Crotalaria Crotalaria Average LSD5% junc. L. spect. ROTH N % 3.70 2.70 3.20 0.60 Ca % 2.00 2.60 2.30 0.70 K % 1.70 0.90 1.30 0.30 Mg % 0.44 0.35 0.39 0.09 P % 0.27 0.18 0.22 0.01 S % 0.24 0.23 0.24 0.02 NO3 - N ppm 985.00 395.00 690.00 58.40 Fe ppm 317.50 210.50 264.00 25.10 Al ppm 249.00 152.50 200.70 14.00 Mn ppm 57.00 36.60 46.80 3.70 Sr ppm 53.60 72.90 63.20 2.30 Na ppm 49.50 24.90 37.20 4.70 B ppm 27.60 38.70 33.10 5.40 Zn ppm 16.10 17.30 16.70 0.40 Cu ppm 6.40 7.10 6.80 0.08 Ba ppm 4.80 38.50 21.70 6.40 Mo ppm 1.40 1.00 1.20 0.40 Cr ppm 0.60 0.50 0.50 0.50 Se ppm 0.60 0.30 0.50 0.10 Ni ppm 0.40 0.50 0.50 0.20 As ppm 0.27 0.07 0.17 0.08 Pb ppm 0.23 0.09 0.16 0.03 Cd ppm 0.11 0.07 0.09 0.02 Co ppm 0.06 0.01 0.07 0.04 Table 4. Element uptake of Crotalaria juncea L. and Crotalaria spectabilis ROTH before flowering on calcareous chernozem soil. Nagyhörcsök, 1998 Element Amount Cr. jun. L. Cr. sp. ROTH Average LSD5 % N kg ha-1 484.70 251.10 367.90 68.90 Ca kg ha-1 262.00 241.80 251.90 76.60 K kg ha-1 107.60 83.70 95.60 22.00 Mg kg ha-1 57.50 32.50 45.00 1.00 P kg ha-1 35.40 23.90 29.60 0.10 S kg ha-1 31.80 22.20 27.00 0.20 NO3 - N kg ha-1 12.90 3.60 8.20 0.60 Fe kg ha-1 4.10 1.90 3.00 0.280 Al kg ha-1 3.20 1.40 2.30 0.16 Sr g ha-1 700.00 600.00 650.00 20.00 Mn g ha-1 700.00 300.00 500.00 30.00 Na g ha-1 600.00 200.00 400.00 50.00 Cu g ha-1 500.00 60.00 280.00 3.00 B g ha-1 300.00 300.00 300.00 40.00 Zn g ha-1 200.00 100.00 150.00 3.00 Ba g ha-1 60.00 300.00 180.00 50.00 Mo g ha-1 10.00 9.00 8.00 2.00 Cr g ha-1 7.00 4.00 5.00 5.00 Se g ha-1 7.00 2.00 4.00 0.80 Ni g ha-1 5.00 4.00 4.00 1.00 Pb g ha-1 3.00 0.80 1.00 0.10 As g ha-1 3.00 0.60 1.00 0.40 Cd g ha-1 1.00 0.60 0.80 0.03 Co g ha-1 0.70 0.09 0.30 0.10 Address of the author: Márton László Research Institute for Soil Science and Agricultural Chemistry of the Hungarian Academy of Sciences. H - 1022 Budapest., Herman O. u. 15.

Greenland plays a large role in the gloomy picture painted of probable future sea-level rise

NASA Astrophysics Data System (ADS)

Hanna, Edward

2012-12-01

Goelzer et al (2012) paint a portentous picture of what is likely to happen to the global sea-level over the next 1000 years. This worrying assessment is based on our current best understanding of how the world's giant ice sheets of Greenland and Antarctica, as well as a quarter of a million smaller glacial ice masses, and the ocean collectively respond to ongoing climate change. Theirs is a state of the science study that integrates these key contributors of sea-level change based on the latest models and current understanding, and an integrated Earth systems modelling approach termed LOVECLIM. As they point out in their study, only a handful of global climate models to date—i.e. models that are used to make predictions of future climate change—incorporate dynamically (fully) coupled ice-sheet models. According to the scenarios presented by Goelzer et al (2012), we could see between 2.1 and 6.8 m of global sea-level rise by 3000 AD, compared with 'just' 1.1 m if the atmosphere is stabilised at 2000 CO2 levels. Much, up to some 4 m, of this contribution comes from increased melting and mass loss of the Greenland ice sheet, which is several times more sensitive than the Antarctic ice sheet to warming temperatures in these simulations. Interestingly, dynamical ice mass losses through iceberg calving become increasingly less significant for Greenland as the ice sheet retreats further inland during the 1000 yr runs (Sole et al 2008). The latest modelling studies show that around a half, perhaps more, of the recent Greenland mass losses (Barletta et al 2012, Rignot et al 2011) are already through increased melt and runoff (Hanna et al 2008, 2012, van den Broeke et al 2009); note also the recent (summer 2012) record surface melting of the Greenland ice sheet (Nghiem et al 2012) caused by atmospheric forcing (Overland et al 2012) and the potential of such events to impact on ice flow (Bartholomew et al 2011). By contrast, the greatest sea-level rise reported for Antarctica by 3000 AD is no more than 94 cm Antarctica remains relatively insensitive for future sea-level rise given a temperature increase of no more than 5-6 °C (quite a lot) above present levels. Oceanic thermal expansion and, especially, glacier melt seem very much second-order effects, compared with the Greenland sea-level contribution, for the next millennium. As expected, there are considerable differences between the outcomes of the model experiments depending on the time and level at which greenhouse gas emissions are stabilised. I am not quite sure why they 'prefer' the model version which reaches stabilisation at 2000 greenhouse gas levels since those levels have since been significantly exceeded and show no signs of tailing off yet—quite the reverse. According to the famous Keeling et al dataset from Mauna Loa in Hawaii, atmospheric CO2 levels at about 369 parts per million by volume of the global atmosphere in 2000 have since risen to about 392 ppmv in 2012, and this increase shows no signs of abating. Realistically, it's going to be at least another decade or two (or longer) before we can effectively even begin to stabilise atmospheric greenhouse gas levels, assuming the political will is there: which at the moment it is not. Of course this does not commit us to the other three more extreme experimental results (from greenhouse gas stabilization at 2100) reported in the study but we are heading dangerously in that direction. In effect the simulations are sensitivity studies, which may be largely unrealistic but are still useful as a kind of guide to what might happen under future climate change. Naturally, many uncertainties remain, especially concerning how ice-sheet motion ('dynamics') is represented in the models (e.g. the absence of so-called 'higher order physics' including longitudinal (push-pull) stresses which can rapidly transfer peripheral ice velocity perturbations inland (Price et al 2011)). Furthermore, the atmospheric model used in LOVECLIM is very coarse at 5.625° latitude/longitude resolution. There appears to be a cancelling out of errors in LOVECLIM, where its climate sensitivity seems quite low (in comparison with other models) but the simulated enhanced high-latitude warming—often termed Arctic amplification and evident in observed climate data for the last 30 years—is quite high. It would be good to include precipitation as well as temperature changes when modelling the future response of glaciers, even though the former is likely to be less important. I do not agree that uncertainties in climate sensitivity can be adequately accounted for by varying boundary and initial conditions in ensembles of models, as all of the model simulations may be systematically biased due to some physical effect that is improperly considered—or unrepresented—by all of the models, but this is a widely used technique and probably the best that can be done here. Despite these caveats, Goelzer et al 's (2012) results will undoubtedly prove useful for the Intergovernmental Panel on Climate Change (IPCC)'s upcoming Fifth Assessment Report due to be released in 2014. The key challenge remains to further improve the individual components of the Earth system model, especially those concerning ice-sheet dynamics. Acknowledgments EH thanks Ben Brock, Amy Jowett and Andrew Sole for useful editorial suggestions to the text. References Barletta V R, Sørensen L S and Forsberg R 2012 Variability of mass changes at basin scale for Greenland and Antarctica Cryosp. Discuss. 6 3397-446 Bartholomew I, Nienow P, Sole A, Mair D, Cowton T and King M A 2011 Seasonal variations in Greenland ice sheet motion: inland extent and behaviour at higher elevations Earth Planet. Sci. Lett. 307 271-8 Goelzer H, Huybrechts P, Raper S C B, Loutre M -F, Goosse H and Fichefet T 2012 Millennial total sea-level commitments projected with the Earth system model of intermediate complexity LOVECLIM Environ. Res. Lett. 7 045401 Hanna E, Huybrechts P, Steffen K, Cappelen J, Huff R, Shuman C, Irvine-Fynn T, Wise S and Griffiths M 2008 Increased runoff from melt from the Greenland ice sheet: a response to global warming J. Clim. 21 331-41 Hanna E, Jones J M, Cappelen J, Mernild S H, Wood L, Steffen K and Huybrechts P 2012 The influence of North Atlantic atmospheric and oceanic forcing effects on 1900-2010 Greenland summer climate and ice melt/runoff Int. J. Climatol. at press (doi:10.1002/joc.3475) Nghiem S V, Hall D K, Mote T L, Tedesco M, Albert M R, Keegan K, Shuman C A A, DiGirolamo N E and Neumann G 2012 The extreme melt across the Greenland ice sheet in 2012 Geophys. Res. Lett. at press (doi:10.1029/2012GL053611) Overland J E, Francis J, Hanna E and Wang M 2012 The recent shift in early summer Arctic atmospheric circulation Geophys. Res. Lett. 39 L19804 Price S F, Payne A J, Howat I M and Smith B E 2011 Committed sea-level rise for the next century from Greenland ice sheet dynamics during the past decade Proc. Natl Acad. Sci. 108 8978-83 Rignot E, Velicogna I, van den Broeke M R, Monaghan A and Lenaerts J 2011 Acceleration of the contribution of the Greenland and Antarctic ice sheets to sea level rise Geophys. Res. Lett. 38 L05503 Sole A, Payne T, Bamber J, Nienow P and Krabill W 2008 Testing hypotheses of the cause of peripheral thinning of the Greenland ice sheet: is land-terminating ice thinning at anomalously high rates? Cryosphere 2 205-18 van den Broeke M, Bamber J, Ettema J, Rignot E, Schrama E, van de Berg W, van Meijgaard E, Velicogna I and Wouters B 2009 Partitioning recent Greenland mass loss Science 326 984-6

An Integrated Biochemistry Laboratory, Including Molecular Modeling

NASA Astrophysics Data System (ADS)

Hall, Adele J. Wolfson Mona L.; Branham, Thomas R.

1996-11-01

The dilemma of designing an advanced undergraduate laboratory lies in the desire to teach and reinforce basic principles and techniques while at the same time exposing students to the excitement of research. We report here on a one-semester, project-based biochemistry laboratory that combines the best features of a cookbook approach (high success rate, achievement of defined goals) with those of an investigative, discovery-based approach (student involvement in the experimental design, excitement of real research). Individual modules may be selected and combined to meet the needs of different courses and different institutions. The central theme of this lab is protein purification and design. This laboratory accompanies the first semester of biochemistry (Structure and Function of Macromolecules, a course taken mainly by junior and senior chemistry and biological chemistry majors). The protein chosen as the object of study is the enzyme lysozyme, which is utilized in all projects. It is suitable for a student lab because it is easily and inexpensively obtained from egg white and is extremely stable, and its high isoelectric point (pI = 11) allows for efficient separation from other proteins by ion-exchange chromatography. Furthermore, a literature search conducted by the resourceful student reveals a wealth of information, since lysozyme has been the subject of numerous studies. It was the first enzyme whose structure was determined by crystallography (1). Hendrickson et al. (2) have previously described an intensive one-month laboratory course centered around lysozyme, although their emphasis is on protein stability rather than purification and engineering. Lysozyme continues to be the focus of much exciting new work on protein folding and dynamics, structure and activity (3 - 5). This lab course includes the following features: (i) reinforcement of basic techniques, such as preparation of buffers, simple enzyme kinetics, and absorption spectroscopy; (ii) experience with methods of protein purification; (iii) incorporation of appropriate controls into experiments; (iv) use of basic statistics in data analysis; (v) writing papers and grant proposals in accepted scientific style; (vi) peer review; (vii) oral presentation of results and proposals; and (viii) introduction to molecular modeling. Figure 1 illustrates the modular nature of the lab curriculum. Elements from each of the exercises can be separated and treated as stand-alone exercises, or combined into short or long projects. We have been able to offer the opportunity to use sophisticated molecular modeling in the final module through funding from an NSF-ILI grant. However, many of the benefits of the research proposal can be achieved with other computer programs, or even by literature survey alone. Figure 1.Design of project-based biochemistry laboratory. Modules (projects, or portions of projects) are indicated as boxes. Each of these can be treated independently, or used as part of a larger project. Solid lines indicate some suggested paths from one module to the next. The skills and knowledge required for protein purification and design are developed in three units: (i) an introduction to critical assays needed to monitor degree of purification, including an evaluation of assay parameters; (ii) partial purification by ion-exchange techniques; and (iii) preparation of a grant proposal on protein design by mutagenesis. Brief descriptions of each of these units follow, with experimental details of each project at the end of this paper. Assays for Lysozyme Activity and Protein Concentration (4 weeks) The assays mastered during the first unit are a necessary tool for determining the purity of the enzyme during the second unit on purification by ion exchange. These assays allow an introduction to the concept of specific activity (units of enzyme activity per milligram of total protein) as a measure of purity. In this first sequence, students learn a turbidimetric assay for lysozyme activity and a colorimetric one for protein concentration. Familiarity with the assays is reinforced by an independently designed project to modify a variable in one of these assays. The assay for lysozyme activity is that of Shugar (6), based on hydrolysis of a cell-wall suspension from the bacterium Micrococcus lysodeikticus, a substrate that is particularly sensitive to lysozyme. As the cell walls are broken down by the enzyme, the turbidity of the sample decreases. This decrease can be conveniently measured by following the decrease in absorbance at a wavelength of 450 nm, using a spectrophotometer or other device for measuring light scattering. The Bradford method (7), a standard assay, is used to determine protein concentration. Using the data from both lysozyme activity assays and protein concentration assays, students can calculate the specific activity for commercial lysozyme and an egg- white solution. These calculations clearly demonstrate the increase in specific activity with increasing purity, since the purified (commercial) preparation has a specific activity approximately 20-fold higher than that of the crude egg-white solution. Lysozyme Purification by Ion-Exchange Chromatography (5 weeks) As suggested by Strang (8), students can design a rational purification of lysozyme using ion-exchange chromatography when presented with information on the isoelectric point of the enzyme and the properties of ion- exchange resins. One week is spent discussing protein purification and the relative advantages and disadvantages of different resins. Each group has a choice of anion-exchange (DEAE) or cation-exchange (CM) resins. Because lysozyme is positively charged below a pH of 11, it will not be adsorbed to an anion-exchange resin, but will be adsorbed to the cation-exchange resin. Therefore, for the cation-exchange protocols, there are further options for methods of collecting and eluting the desired protein. A purification table, including information on yield, specific activity, and degree of purification, is constructed. As described by both Strang (8) and Hurst et al. (9), excellent purifications can be obtained by cation-exchange chromatography, especially when elution is carried out with a salt gradient. Even a stepwise elution yields a highly purified fraction. Students' results for degrees of purification using cation exchange range from 15- to 50-fold. Anion-exchange has been less successful, with purification factors less than 5, although the principle that the positively charged lysozyme will not be adsorbed to the resin is still noted. During the last lab for this project, the crude and purified fractions are analyzed by SDS - polyacrylamide gel electrophoresis. The results of electrophoresis correlate well with calculated purification results. It is very clear that for preparations with high degrees of purification, a single band corresponding to standard lysozyme is observed, whereas for the anion-exchange procedures, multiple contaminating bands are still present. Allowing the students to choose and plan their own purification scheme in consultation with the instructor not only gives them experience in experimental design, but also introduces some flexibility in the level of work expected from each student. Those students who have had much previous lab experience in other courses or who have done independent research can choose to carry out a complex purification scheme, giving them exposure to techniques they may not have used before, whereas students with less experience can be guided to a less demanding purification procedure. Grant Proposal on Protein Design (4 weeks) The culminating exercise is a library/computer project on protein design and engineering. The students propose mutational studies of lysozyme to study stability or mechanism, based on the enzyme's known structure. Perhaps the most exciting area in protein biochemistry today is protein design and engineering. This is an appropriate final project, since by then the students have an appreciation for the complexities of dealing with proteins and should be capable of planning an extension of the project. The students by this point are familiar with the structure of hen egg-white lysozyme (1). The structure of the corresponding enzyme from bacteriophage T4 has also been established (10) and rational site-directed mutagenesis has been carried out to answer specific questions about the factors that affect protein stability (11). The relationship between the two lysozymes can provide a starting point for the students' manipulations of the enzyme from hen egg white, especially since there are many amino acids conserved in the two structures (12). Many mutations for the hen enzyme have also been described (13), and students are expected to carry out literature searches beyond the references supplied. The students examine structure - function relationships and decide on changes they would like to make in the lysozyme molecule, based on energy calculations and the scientific literature describing previous mutations in this and similar proteins. Several potential mutation sites are illustrated in Figure 2. Figure 2.The active site of hen egg-white lysozyme. The back-bone structure of lysozyme is illustrated as a ribbon model, with side-chains for tryptophan 62, 63, and 108 as stick models. Atomic coordinates for lysozyme were obtained from the Protein Data Bank. The molecule was displayed and manipulated using Quanta (MSI) on an Iris Indigo Workstation (Silicon Graphics). The active site of the enzyme is depicted, with side-chains of three tryptophan residues indicated. These residues have been implicated in lysozyme's mechanism of action, although not in actual catalysis. Tryptophan residues 62 and 63 participate in hydrogen bonding to substrate, and steric hindrance with Trp 108 has been thought to induce conformational strain in the substrate, favoring the transition state (reviewed in ref 13). In order to evaluate the importance of these interactions, students have proposed conservative or radical mutations at these sites. Once they have changed the amino acid residue and allowed the model to reach a new minimum energy, they can measure interatomic distances to determine whether or not a substrate can fit into the active site and/or form hydrogen bonds. A subtle variation on mutation of Trp 108 was a proposal to mutate an adjacent alanine residue, such as to displace the Trp further toward the helix and open up the active site. Other mutations, outside of the active site, have been proposed to change the overall stability of the protein (e.g., Gly to Ala within an a-helix, or loss of a disulfide bond). This exercise illustrates the possibilities of modeling proteins. Because it requires that the students set certain parameters and defaults for structural prediction, it helps them to understand the limitations of modeling. The final paper takes the form of a grant proposal. It presents the purification results, rationale for the desired mutation, relevance to previous studies, an overview of techniques applicable to the study of the mutant, predictions as to the characteristics of the engineered protein, and a plan for its purification. These proposals pass through at least one stage of peer review, and each student gives an oral presentation. This project serves to tie together many concepts learned during both the lecture and laboratory portions of the course. As noted above, we have been able to acquire workstations and software for modeling through funding from an NSF-ILI grant. However, the research proposal exercise can be modified, depending on facilities available and the goals of a particular course. A literature survey alone yields a wealth of information on this enzyme, and students can design experiments in biochemistry or molecular biology to follow up on the papers they have read. Some recent textbooks are accompanied by diskettes that allow visualization of proteins on computer monitors, although not manipulation of the structures. Computer programs such as Hyperchem (Autodesk, Sausalito CA) and Nanovision (ACS Software) allow display of proteins using PDB coordinates, and students can make decisions about which residues to mutate based on their position in the natural structure or in analogous proteins. Peer review of student work is incorporated into many writing courses (14), as well other courses that require multiple drafts of papers. We have found it to be a useful exercise for students in this laboratory course, both for the short paper and the grant proposal, although some care must be taken that students do not reinforce one another's misconceptions about scientific writing. There are many advantages to the students to this two-stage writing process. Most superficial, but not unimportant, is that it forces them to have their ideas in some written form one week before the final assignment is due. More significantly, it is a part of their professional training. The peer reviews are, in general, full of thoughtful and useful advice to their colleagues. They also learn a good deal from reading other drafts - about styles of writing, effective use of figures and tables, and references that might be useful to their own projects. Feedback from students indicates that they particularly enjoy devising their own experimental plans and that they appreciate the chance to work under the different conditions of small groups and as individuals. Not all of the exercises described here will be appropriate for every undergraduate biochemistry laboratory. However, the principle of projects that take several weeks to develop, beginning with basic concepts and working up to independently designed experiments, can be adapted to many settings. Experimental Details for Each Project Enzyme Assay The substrate, Micrococcus lysodeikticus, is obtained from Sigma (St. Louis). A suspension (0.3 mg/mL) is prepared fresh in 0.1 M phosphate buffer, pH 6.24, each day. Commercial lysozyme (also from Sigma), 2 mg/mL, as well as a 1:5 dilution of egg white, both in the same phosphate buffer, are used as a source of enzyme. From the change in absorbance over the time of assay, students calculate the activity of each enzyme preparation in terms of units per milliliter. A unit of lysozyme activity is defined as the amount of enzyme that will produce a DeltaA450 of 0.001 per min at pH 6.24 at 25 oC. Linearity of the enzyme-catalyzed reaction over the course of 5 min is the criterion used to choose an appropriate dilution of each enzyme preparation. Although the activity of the enzyme is sensitive to effects of pH and ionic strength (15), if these variables are held constant, the assay is quite reproducible and is, in general, very suitable for monitoring purification procedures (16). Protein Assay Students are supplied with a standard solution of lysozyme at a concentration of 2 mg/mL and the Coomassie blue reagent, obtained from BioRad (Hercules, CA), from which they prepare standards over the range 75 to 1500 mg/mL. Unknowns (in this case, the egg-white solution) are diluted appropriately. A standard curve is prepared by plotting the average absorbance at 595 nm for each set of duplicate readings. Using this standard curve, students determine the protein concentration for each unknown sample. Independent Assay Project Working in pairs or groups of three, the students design an experiment in which they vary one condition in the enzyme assay for lysozyme or in the Bradford assay for total protein and determine the effects on the assay. Examples of conditions to be varied for the enzyme assay are enzyme concentration, time of incubation, substrate concentration, addition of salts, change in pH or ionic strength of buffer, and addition of sulfhydryl reagent. Examples of conditions to be varied for the protein assay are identity of the protein used as standard (e.g., bovine serum albumin rather than lysozyme), time of incubation, wavelength of measurement, addition of salts, and addition of detergent. In these independent projects, students sometimes discover ways to improve the methodology for the assays, and these improvements are incorporated into the suggested procedures for the rest of the semester. The results of this project are written up as a short paper in a style appropriate for a rapid communication in a scientific journal. The papers go through a round of peer review and revision. Ion-Exchange Chromatography Once each group has decided on a project and discussed the details with the instructor, they prepare their own buffers and equilibrate the resins. DEAE-Sephacel and CM-Sepharose, both from Pharmacia/LKB (Piscataway, NJ) are supplied, about 20 mL of packed resin for each egg-white preparation. (These resins can be regenerated and reused many times.) Each group uses one egg white for the entire purification project. The egg white is filtered through one layer of cheesecloth and diluted 5-fold with the starting buffer. The first step is done batchwise because of the viscosity of the sample. The diluted egg white is mixed with the resin for approximately 15 min, then centrifuged at 1500 μ g for 15 min. The supernatant, containing those proteins not adsorbed to the resin, is decanted. Subsequent washing and elution can then be carried out batchwise or by transferring to a column [1.5 - 20 cm Econocolumns (BioRad)]. The options for recovery of the enzyme from the CM resin include a batch or column method, elution by change in pH or ionic strength, and gradient or stepwise elution. Those carrying out elutions from a column use an automatic fraction collector; gradient formers are available for those who choose to elute with a linear salt gradient. When elution is carried out by a change in pH, it should be noted that lysozyme may precipitate near its isoelectric point, especially at low ionic strength. SDS - polyacrylamide gel electrophoresis is used to monitor purity of the final preparation. Using mini-gels (BioRad Mini-Protean II apparatus), each group can pour, run, and stain their own 8 7.3-cm gel within the lab period; destaining can be carried out at any time afterward. The main contaminating band observed is ovalbumin, at a molecular weight of 46,000. Computer Modeling Using the program Quanta (MSI, Burlington, MA) on Indigo workstations (Silicon Graphics, Hudson, MA), the students retrieve coordinates from an MSI version of the Protein Data Bank, display the structure, and rationalize what changes would occur with a mutated form of the protein. Even for those who do not have Quanta or analogous programs, structural coordinates are available through the Internet. Students are prepared for their independent use of the molecular modeling workstations through a series of tutorials during the course of the semester. These exercises require that the students become familiar with specific applications of Quanta, including setting secondary conformation and hydrogen bonds, energy calculations, selectively displaying parts of molecules, measuring interatomic distances, and editing existing proteins. This introduction to macromolecular modeling is comparable to that suggested by Harvey and Tan (17) as a brief introduction to the field. Peer Review For each writing assignment (short paper and grant proposal), one week of lab is devoted to the peer review process. Students are to come to lab with a draft of their paper and a cover letter to their reviewers, which states how far they believe they are in the writing process; what they like and don't like about their work at this stage; and in what specific areas they need help (e.g., audience level, organization, use of references). They exchange papers, reading two or three during the course of the lab period. For each paper, they fill out a peer review form, which requires that they summarize the paper; look for clarity of presentation, appropriate citations, and use of others' work; point out any problems in organization or grammar; and suggest the steps necessary to complete the paper. They then go over the peer review form with the writer, referring any questions or disagreements to the instructor. It is most helpful if the instructor can also read and comment on the draft. General comments on the level of detail included and any problems with the reasoning come more appropriately from the instructor than from peers. The paper is then revised and handed in on the following week. The final draft is accompanied by a summary of revisions and copies of all peer reviews. Students are graded on peer reviews and summaries of revisions and cover letters, as well as on the final paper. Acknowledgments The molecular modeling workstations and associated software were purchased with funding from NSF, Instrumentation and Laboratory Improvement program, grant DUE-9350843 to AJW, with matching funds from Wellesley College. Some of the equipment for protein purification was funded by a grant from the Howard Hughes Medical Institute to Wellesley College. 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