Science.gov

Sample records for maize streak disease

  1. Plant host range and leafhopper transmission of Maize fine streak virus

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Maize fine streak virus (MFSV), an emerging rhabdovirus species in the genus Nucleorhabdovirus, is persistently transmitted by the black-faced leafhopper, Graminella nigrifrons (Forbes). MFSV was transmitted to maize, wheat, oats, rye, barley, foxtail, annual ryegrass and quackgrass by G. nigrifron...

  2. Nuclear import of Maize fine streak virus proteins in Drosophila S2 cells

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Maize fine streak virus (MFSV) is a member of the genus Nucleorhabdovirus, family Rhabdoviridae and is transmitted by the leafhopper Graminella nigrifons. The virus replicates in both its plant host and in its insect vector. Nucleorhabdoviruses replicate in the nucleus and assemble at the inner nu...

  3. Dual transcriptome analysis reveals insights into the response to Rice black-streaked dwarf virus in maize.

    PubMed

    Zhou, Yu; Xu, Zhennan; Duan, Canxing; Chen, Yanping; Meng, Qingchang; Wu, Jirong; Hao, Zhuanfang; Wang, Zhenhua; Li, Mingshun; Yong, Hongjun; Zhang, Degui; Zhang, Shihuang; Weng, Jianfeng; Li, Xinhai

    2016-08-01

    Maize rough dwarf disease (MRDD) is a viral infection that results in heavy yield losses in maize worldwide, particularly in the summer maize-growing regions of China. MRDD is caused by the Rice black-streaked dwarf virus (RBSDV). In the present study, analyses of microRNAs (miRNAs), the degradome, and transcriptome sequences were used to elucidate the RBSDV-responsive pathway(s) in maize. Genomic analysis indicated that the expression of three non-conserved and 28 conserved miRNAs, representing 17 known miRNA families and 14 novel miRNAs, were significantly altered in response to RBSDV when maize was inoculated at the V3 (third leaf) stage. A total of 99 target transcripts from 48 genes of 10 known miRNAs were found to be responsive to RBSDV infection. The annotations of these target genes include a SQUAMOSA promoter binding (SPB) protein, a P450 reductase, an oxidoreductase, and a ubiquitin-related gene, among others. Characterization of the entire transcriptome suggested that a total of 28 and 1085 differentially expressed genes (DEGs) were detected at 1.5 and 3.0 d, respectively, after artificial inoculation with RBSDV. The expression patterns of cell wall- and chloroplast-related genes, and disease resistance- and stress-related genes changed significantly in response to RBSDV infection. The negatively regulated genes GRMZM2G069316 and GRMZM2G031169, which are the target genes for miR169i-p5 and miR8155, were identified as a nucleolin and a NAD(P)-binding Rossmann-fold superfamily protein in maize, respectively. The gene ontology term GO:0003824, including GRMZM2G031169 and other 51 DEGs, was designated as responsive to RBSDV. PMID:27493226

  4. Dual transcriptome analysis reveals insights into the response to Rice black-streaked dwarf virus in maize.

    PubMed

    Zhou, Yu; Xu, Zhennan; Duan, Canxing; Chen, Yanping; Meng, Qingchang; Wu, Jirong; Hao, Zhuanfang; Wang, Zhenhua; Li, Mingshun; Yong, Hongjun; Zhang, Degui; Zhang, Shihuang; Weng, Jianfeng; Li, Xinhai

    2016-08-01

    Maize rough dwarf disease (MRDD) is a viral infection that results in heavy yield losses in maize worldwide, particularly in the summer maize-growing regions of China. MRDD is caused by the Rice black-streaked dwarf virus (RBSDV). In the present study, analyses of microRNAs (miRNAs), the degradome, and transcriptome sequences were used to elucidate the RBSDV-responsive pathway(s) in maize. Genomic analysis indicated that the expression of three non-conserved and 28 conserved miRNAs, representing 17 known miRNA families and 14 novel miRNAs, were significantly altered in response to RBSDV when maize was inoculated at the V3 (third leaf) stage. A total of 99 target transcripts from 48 genes of 10 known miRNAs were found to be responsive to RBSDV infection. The annotations of these target genes include a SQUAMOSA promoter binding (SPB) protein, a P450 reductase, an oxidoreductase, and a ubiquitin-related gene, among others. Characterization of the entire transcriptome suggested that a total of 28 and 1085 differentially expressed genes (DEGs) were detected at 1.5 and 3.0 d, respectively, after artificial inoculation with RBSDV. The expression patterns of cell wall- and chloroplast-related genes, and disease resistance- and stress-related genes changed significantly in response to RBSDV infection. The negatively regulated genes GRMZM2G069316 and GRMZM2G031169, which are the target genes for miR169i-p5 and miR8155, were identified as a nucleolin and a NAD(P)-binding Rossmann-fold superfamily protein in maize, respectively. The gene ontology term GO:0003824, including GRMZM2G031169 and other 51 DEGs, was designated as responsive to RBSDV.

  5. Dual transcriptome analysis reveals insights into the response to Rice black-streaked dwarf virus in maize

    PubMed Central

    Zhou, Yu; Xu, Zhennan; Duan, Canxing; Chen, Yanping; Meng, Qingchang; Wu, Jirong; Hao, Zhuanfang; Wang, Zhenhua; Li, Mingshun; Yong, Hongjun; Zhang, Degui; Zhang, Shihuang; Weng, Jianfeng; Li, Xinhai

    2016-01-01

    Maize rough dwarf disease (MRDD) is a viral infection that results in heavy yield losses in maize worldwide, particularly in the summer maize-growing regions of China. MRDD is caused by the Rice black-streaked dwarf virus (RBSDV). In the present study, analyses of microRNAs (miRNAs), the degradome, and transcriptome sequences were used to elucidate the RBSDV-responsive pathway(s) in maize. Genomic analysis indicated that the expression of three non-conserved and 28 conserved miRNAs, representing 17 known miRNA families and 14 novel miRNAs, were significantly altered in response to RBSDV when maize was inoculated at the V3 (third leaf) stage. A total of 99 target transcripts from 48 genes of 10 known miRNAs were found to be responsive to RBSDV infection. The annotations of these target genes include a SQUAMOSA promoter binding (SPB) protein, a P450 reductase, an oxidoreductase, and a ubiquitin-related gene, among others. Characterization of the entire transcriptome suggested that a total of 28 and 1085 differentially expressed genes (DEGs) were detected at 1.5 and 3.0 d, respectively, after artificial inoculation with RBSDV. The expression patterns of cell wall- and chloroplast-related genes, and disease resistance- and stress-related genes changed significantly in response to RBSDV infection. The negatively regulated genes GRMZM2G069316 and GRMZM2G031169, which are the target genes for miR169i-p5 and miR8155, were identified as a nucleolin and a NAD(P)-binding Rossmann-fold superfamily protein in maize, respectively. The gene ontology term GO:0003824, including GRMZM2G031169 and other 51 DEGs, was designated as responsive to RBSDV. PMID:27493226

  6. Transcriptome of the plant virus vector Graminella nigrifrons, and the molecular interactions of Maize fine streak rhabdovirus transmission

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Background: Leafhoppers (Hemiptera:Cicadellidae) are plant-phloem feeders that are known for their ability to vector plant pathogens. The black-faced leafhopper (Graminella nigrifrons) has been identified as the only known vector for the Maize fine streak virus (MFSV), an emerging plant pathogen in...

  7. Factors Influencing the Production of MFSV Full-Length Clone: Maize Fine Streak Virus Proteins in Drosophila S2 Cells

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Maize fine streak virus (MFSV) is negative-sense RNA virus member of the genus Nucleorhabdovirus. Our goal is to determine whether Drosophila S2 cells can support the production of a full-length clone of MFSV. We have previously demonstrated that the full-length MFSV nucleoprotein (N) and phosphopro...

  8. Strand-specific real-time RT-PCR quantitation of Maize fine streak virus genomic and positive-sense RNAs using high temperature reverse transcription

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Efforts to analyze the replicative RNA produced by Maize fine streak virus (MVSF) within maize tissue was complicated by the lack of specificity during cDNA generation using standard reverse transcriptase protocols. Real-time qRT-PCR using cDNA generated by priming with random hexamers does not dist...

  9. Molecular interactions and immune responses between maize fine streak virus and the leafhopper vector G. nigrifrons through differential expression and RNA interference

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Maize fine streak virus (MFSV) is an emerging virus of maize that is transmitted by an insect vector, the leafhopper called Graminella nigrifrons. Virus transmission by the leafhopper requires that the virus enter into and multiply in insect cells, tissues and organs before being transmitted to a ne...

  10. Infectivity and complete nucleotide sequence of the genome of a South African isolate of maize streak virus.

    PubMed

    Lazarowitz, S G

    1988-01-11

    The complete infectious genome of a South African isolate of the geminivirus maize streak (MSV-S) has been cloned, characterized, and sequenced. Using an A. tumefaciens Ti plasmid delivery system, the cloned -2.7 kb single circular MSV component was shown to be necessary and sufficient for infection of maize. Based on sequence analysis of the infectious clone, MSV-S is highly homologous to the previously characterized Kenyan and Nigerian isolates. While the genomic organization of MSV-S has elements in common with each of these previously characterized isolates, it is identical to neither and its analysis addresses the discrepancies between them. The result is a somewhat simplified and unified picture of the viral genome, the structural organization of which is essentially identical to that of wheat dwarf virus. PMID:2829117

  11. Black leaf streak disease affects starch metabolism in banana fruit.

    PubMed

    Saraiva, Lorenzo de Amorim; Castelan, Florence Polegato; Shitakubo, Renata; Hassimotto, Neuza Mariko Aymoto; Purgatto, Eduardo; Chillet, Marc; Cordenunsi, Beatriz Rosana

    2013-06-12

    Black leaf streak disease (BLSD), also known as black sigatoka, represents the main foliar disease in Brazilian banana plantations. In addition to photosynthetic leaf area losses and yield losses, this disease causes an alteration in the pre- and postharvest behavior of the fruit. The aim of this work was to investigate the starch metabolism of fruits during fruit ripening from plants infected with BLSD by evaluating carbohydrate content (i.e., starch, soluble sugars, oligosaccharides, amylose), phenolic compound content, phytohormones, enzymatic activities (i.e., starch phosphorylases, α- and β-amylase), and starch granules. The results indicated that the starch metabolism in banana fruit ripening is affected by BLSD infection. Fruit from infested plots contained unusual amounts of soluble sugars in the green stage and smaller starch granules and showed a different pattern of superficial degradation. Enzymatic activities linked to starch degradation were also altered by the disease. Moreover, the levels of indole-acetic acid and phenolic compounds indicated an advanced fruit physiological age for fruits from infested plots. PMID:23692371

  12. Adaptive evolution by recombination is not associated with increased mutation rates in Maize streak virus

    PubMed Central

    2012-01-01

    Background Single-stranded (ss) DNA viruses in the family Geminiviridae are proving to be very useful in real-time evolution studies. The high mutation rate of geminiviruses and other ssDNA viruses is somewhat mysterious in that their DNA genomes are replicated in host nuclei by high fidelity host polymerases. Although strand specific mutation biases observed in virus species from the geminivirus genus Mastrevirus indicate that the high mutation rates in viruses in this genus may be due to mutational processes that operate specifically on ssDNA, it is currently unknown whether viruses from other genera display similar strand specific mutation biases. Also, geminivirus genomes frequently recombine with one another and an alternative cause of their high mutation rates could be that the recombination process is either directly mutagenic or produces a selective environment in which the survival of mutants is favoured. To investigate whether there is an association between recombination and increased basal mutation rates or increased degrees of selection favoring the survival of mutations, we compared the mutation dynamics of the MSV-MatA and MSV-VW field isolates of Maize streak virus (MSV; Mastrevirus), with both a laboratory constructed MSV recombinant, and MSV recombinants closely resembling MSV-MatA. To determine whether strand specific mutation biases are a general characteristic of geminivirus evolution we compared mutation spectra arising during these MSV experiments with those arising during similar experiments involving the geminivirus Tomato yellow leaf curl virus (Begomovirus genus). Results Although both the genomic distribution of mutations and the occurrence of various convergent mutations at specific genomic sites indicated that either mutation hotspots or selection for adaptive mutations might elevate observed mutation rates in MSV, we found no association between recombination and mutation rates. Importantly, when comparing the mutation spectra of MSV

  13. The intergenic region of maize streak virus contains a GC-rich element that activates rightward transcription and binds maize nuclear factors.

    PubMed

    Fenoll, C; Schwarz, J J; Black, D M; Schneider, M; Howell, S H

    1990-12-01

    Maize streak virus (MSV) is transcribed bidirectionally from an intergenic region and rightward transcription produces an RNA that encodes the coat protein. The intergenic region contains promoter elements required for rightward transcription including an upstream activating sequence (UAS) which endows the promoter with full activity in a maize transient expression system. The UAS contains two GC-rich repeats (GC boxes) and a long inverted repeat or hairpin with a loop harboring a TAATATTAC sequence common to all geminiviruses. Deletions through the UAS demonstrated the presence of an element, called the rightward promoter element (rpe1), which is responsible for transcriptional activation. Rpe1 includes the two GC-rich boxes, which are similar in sequence to Sp1 binding sites in mammalian cells, but not the conserved hairpin loop. Rpe1 binds maize nuclear factors in vitro and the characteristics of the binding interaction have been determined by 1) binding competition with oligonucleotides, 2) methidiumpropyl-EDTA footprinting and 3) methylation interference assays. Binding of maize nuclear factors to the UAS generates two major bands, slow and fast migrating bands, in gel retardation assays. Footprinting and factor titration data suggest that the fast bands arise by the binding of factors to one GC box while the slow bands are generated by factors binding to both boxes. The data further indicate that the factors bind to the two GC-rich boxes with little cooperativity and bind on opposite faces of the DNA helix.

  14. [Development of transgenic maize with anti-rough dwarf virus artificial miRNA vector and their disease resistance].

    PubMed

    Xuan, Ning; Zhao, Chuanzhi; Peng, Zhenying; Chen, Gao; Bian, Fei; Lian, Mingzheng; Liu, Guoxia; Wang, Xingjun; Bi, Yuping

    2015-09-01

    Maize is one of the most important food crops. Rice black-streaked dwarf virus is a maize rough dwarf disease pathogen. The occurrence and transmission of maize rough dwarf disease brings great damage to maize production. The technology of using artificial miRNA to build antiviral plant has been proven effective in a variety of plants. However, such trials in maize have not been reported. We designed primers based on the sequence of maize zea-miR159a precursor and sequence of function protein genes and silencing RBSDV coding genes in RBSDV genome. We constructed amiRNA (artificial miRNA) gene for silencing RBSDV coding gene and gene silencing suppressor. We constructed pCAMBIA3301-121-amiRNA plant expression vector for transforming maize inbred lines Z31 by using agrobacterium mediated method. After molecular analysis of transgenic maize, homozygous lines with high miRNA expression were selected by molecular detection for a subsequent natural infection experiment. We studied the severity of maize rough dwarf disease according to a grading standard (grade 0 to 4). The experiment results showed that the disease resistance of transgenic homozygous maize with the anti-rough dwarf virus amiRNA vector was better than that of wild type. Among the transgenic maize, S6-miR159 transgenic maize had high disease resistance. It is feasible to create new maize variety by the use of artificial miRNA. PMID:26955715

  15. Quasispecies nature of three maize streak virus isolates obtained through different modes of selection from a population used to assess response to infection of maize cultivars.

    PubMed

    Isnard, M; Granier, M; Frutos, R; Reynaud, B; Peterschmitt, M

    1998-12-01

    Three maize streak virus (MSV) isolates were derived from an MSV population used to assess the response to infection of maize cultivars. Isolate SP1 was obtained from this population through short acquisition and inoculation periods (1 and 5 min, respectively), using a single Cicadulina mbila vector. Isolate SP2 was derived from SP1 after transmission to a wild perennial host (Coix lacryma-jobi), on which it was maintained for about 4 years without insect transmission. Isolate N2A, the most pathogenic isolate, was obtained from the initial population after serial passages on almost completely resistant inbred maize lines. The complexity of each isolate was analysed by RFLP analysis and sequencing based on 120 SP1 clones, 36 SP2 clones and 40 N2A clones. All three isolates were composed of different but related clones, consistent with a quasispecies structure. The mutations were distributed throughout the genome. Mutation frequencies, based on all available sequences, were 3.8 x 10(-4) for SP1, 10.5 x 10(-4) for SP2 and 6.9 x 10(-4) for N2A. As expected from the bottleneck selection step, the intra-isolate variability of SP1 was relatively low. Comparison between SP1 and SP2 showed that SP1 heterogeneity increased during maintenance on the wild host. Furthermore, the consensus sequences of SP1 and SP2 differed by two non-synonymous substitutions in the complementary sense gene repA. N2A had a relatively low degree of heterogeneity, but was composed of several sub-populations. The results reflect the influence of the mode of selection of MSV isolates on their quasispecies organization, i.e. distribution of variants, and master sequence.

  16. Control of virus diseases in maize.

    PubMed

    Redinbaugh, Margaret G; Zambrano, José L

    2014-01-01

    Diseases caused by viruses are found throughout the maize-growing regions of the world and can cause significant losses for producers. In this review, virus diseases of maize and the pathogens that cause them are discussed. Factors leading to the spread of disease and measures for disease control are reviewed, as is our current knowledge of the genetics of virus resistance in this important crop. PMID:25410107

  17. Infectivity and complete nucleotide sequence of the genome of a genetically distinct strain of maize streak virus from Reunion Island.

    PubMed

    Peterschmitt, M; Granier, M; Frutos, R; Reynaud, B

    1996-01-01

    A complete infectious genome of an isolate of maize streak subgroup 1 geminivirus from Reunion Island (MSV-R) was cloned and sequenced. Using an Agrobacterium tumefaciens Ti plasmid delivery system, the cloned 2.7 kb circular DNA was shown to be infectious in maize. The agroinfected virus could be transmitted by Cicadulina mbila, the most common vector species of MSV in Reunion. Analysis of open reading frames (ORFs) revealed seven potential coding regions including the 4 ORFs conserved in all geminiviruses infecting monocotyledonous plants, the 2 on the viral "+" strand (MP, CP), and the 2 on the complementary "-" strand (RepA, RepB). The nucleotide sequence of MSV-R was compared to previously determined sequence of three African clones from Nigeria (MSV-N), Kenya (MSV-K), and South Africa (MSV-S). More similarity was found between the African clones (97.0-97.3%) than between these and MSV-R (94.4-95.3%). Nucleotide substitutions were frequent in the large intergenic region, particularly in and around the most likely TATA box for the complementary sense genes, and in the 5' end of ORF V1. The comparison of the predicted peptide sequences of the proteins encoded by ORFs MP, RepA and RepB confirmed the higher similarity between the African clones (97.8-99.3%) than between these and MSV-R (95.1-97.1%). However the amino acid sequences of the protein encoded by ORF CP (capsid protein) were very conserved among all the 4 clones, suggesting a high selection pressure on this ORF. PMID:8893787

  18. Genetic insights into Graminella nigrifrons competence for Maize fine streak virus infection and transmission

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Insects are critical for the spread of most plant virus diseases, with >75% of plant viruses depending on an insects for transmission to new, uninfected hosts. However, little is known about the molecular and cellular factors in the insect that are important for virus transmission. The black-faced l...

  19. Molecular characterization of segments S7 to S10 of a southern rice black-streaked dwarf virus isolate from maize in northern China.

    PubMed

    Yin, Xiao; Xu, Fei-fei; Zheng, Fang-qiang; Li, Xiang-dong; Liu, Bao-shen; Zhang, Chun-qing

    2011-02-01

    Southern rice black-streaked dwarf virus (SRBSDV) is a novel Fijivirus prevalent in rice in southern and central China, and northern Vietnam. Its genome has 10 segments of double-stranded RNA named S1 to S10 according to their size. An isolate of SRBSDV, JNi4, was obtained from naturally infected maize plants from Ji'ning, Shandong province, in the 2008 maize season. Segments S7 to S10 of JNi4 share nucleotide identities of 72.6%-73.1%, 72.3%-73%, 73.9%-74.5% and 77.3%-79%, respectively, with corresponding segments of Rice black-streaked dwarf virus isolates, and identities of 99.7%, 99.1%-99.7%, 98.9%-99.5%, and 98.6%-99.2% with those of SRBSDV isolates HN and GD. JNi4 forms a separate branch with GD and HN in the phylogenetic trees constructed with genomic sequences of S7 to S10. These results confirm the proposed taxonomic status of SRBSDV as a distinct species of the genus Fijivirus and indicate that JNi4 is an isolate of SRBSDV. Shandong is so far the northernmost region where SRBSDV is found in China.

  20. RNAi-derived field resistance to Cassava brown streak disease persists across the vegetative cropping cycle

    PubMed Central

    Odipio, John; Ogwok, Emmanuel; Taylor, Nigel J; Halsey, Mark; Bua, Anton; Fauquet, Claude M; Alicai, Titus

    2014-01-01

    A confined field trial was established to determine durability of RNAi-mediated resistance to Cassava brown streak disease (CBSD). Stem cuttings were obtained from field-grown cassava plants of cv 60444 transgenic for construct p718, consisting of an 894 bp inverted repeat sequence from the Ugandan Cassava brown streak virus (UCBSV) coat protein. Plants were established from three transgenic lines previously shown to provide complete resistance to UCBSV and differing levels of protection to the non-homologous virus species Cassava brown streak virus (CBSV), and grown for 11 months. CBSD symptoms were observed on shoots and storage roots of all non-transgenic cv 60444 control plants and transgenic lines p718–002 and p718–005, but not on p718–001. RT-PCR diagnostic showed tissues of plant lines p718–002 and p718–005 to be infected with CBSV, but free of UCBSV. All leaves and roots of p718–001 plants were to carry no detectable levels of either pathogen. Plants of cv 60444 in this field trial showed severe cassava mosaic disease symptoms, indicating that presence of replicating geminiviruses did not cause significant suppression of RNAi-mediated resistance to CBSD. Resistance to CBSD across a vegetative cropping cycle confirms earlier field data, and provides an important step in proof of concept for application of RNAi technology to control of CBSD under conditions encountered in farmers’ fields. PMID:24296511

  1. RNAi-derived field resistance to Cassava brown streak disease persists across the vegetative cropping cycle.

    PubMed

    Odipio, John; Ogwok, Emmanuel; Taylor, Nigel J; Halsey, Mark; Bua, Anton; Fauquet, Claude M; Alicai, Titus

    2014-01-01

    A confined field trial was established to determine durability of RNAi-mediated resistance to Cassava brown streak disease (CBSD). Stem cuttings were obtained from field-grown cassava plants of cv 60444 transgenic for construct p718, consisting of an 894 bp inverted repeat sequence from the Ugandan Cassava brown streak virus (UCBSV) coat protein. Plants were established from three transgenic lines previously shown to provide complete resistance to UCBSV and differing levels of protection to the non-homologous virus species Cassava brown streak virus (CBSV), and grown for 11 months. CBSD symptoms were observed on shoots and storage roots of all non-transgenic cv 60444 control plants and transgenic lines p718-002 and p718-005, but not on p718-001. RT-PCR diagnostic showed tissues of plant lines p718-002 and p718-005 to be infected with CBSV, but free of UCBSV. All leaves and roots of p718-001 plants were to carry no detectable levels of either pathogen. Plants of cv 60444 in this field trial showed severe cassava mosaic disease symptoms, indicating that presence of replicating geminiviruses did not cause significant suppression of RNAi-mediated resistance to CBSD. Resistance to CBSD across a vegetative cropping cycle confirms earlier field data, and provides an important step in proof of concept for application of RNAi technology to control of CBSD under conditions encountered in farmers' fields.

  2. Artificial microRNA-derived resistance to Cassava brown streak disease.

    PubMed

    Wagaba, Henry; Patil, Basavaprabhu L; Mukasa, Settumba; Alicai, Titus; Fauquet, Claude M; Taylor, Nigel J

    2016-05-01

    Artificial miRNAs (amiRNA) were generated targeting conserved sequences within the genomes of the two causal agents of Cassava brown streak disease (CBSD): Cassava brown streak virus (CBSV) and Ugandan cassava brown streak virus (UCBSV). Transient expression studies on ten amiRNAs targeting 21nt conserved sequences of P1(CBSV and UCBSV), P3(CBSV and UCBSV), CI(UCBSV), NIb(CBSV and UCBSV), CP(UCBSV) and the un-translated region (3'-UTR) were tested in Nicotiana benthamiana. Four out of the ten amiRNAs expressed the corresponding amiRNA at high levels. Transgenic N. benthamiana plants were developed for the four amiRNAs targeting the P1 and NIb genes of CBSV and the P1 and CP genes of UCBSV and shown to accumulate miRNA products. Transgenic plants challenged with CBSV and UCBSV isolates showed resistance levels that ranged between ∼20-60% against CBSV and UCBSV and correlated with expression levels of the transgenically derived miRNAs. MicroRNAs targeting P1 and NIb of CBSV showed protection against CBSV and UCBSV, while amiRNAs targeting the P1 and CP of UCBSV showed protection against UCBSV but were less efficient against CBSV. These results indicate a potential application of amiRNAs for engineering resistance to CBSD-causing viruses in cassava.

  3. Artificial microRNA-derived resistance to Cassava brown streak disease

    PubMed Central

    Wagaba, Henry; Patil, Basavaprabhu L.; Mukasa, Settumba; Alicai, Titus; Fauquet, Claude M.; Taylor, Nigel J.

    2016-01-01

    Artificial miRNAs (amiRNA) were generated targeting conserved sequences within the genomes of the two causal agents of Cassava brown streak disease (CBSD): Cassava brown streak virus (CBSV) and Ugandan cassava brown streak virus (UCBSV). Transient expression studies on ten amiRNAs targeting 21 nt conserved sequences of P1(CBSV and UCBSV), P3(CBSV and UCBSV), CI(UCBSV), NIb(CBSV and UCBSV), CP(UCBSV) and the un-translated region (3′-UTR) were tested in Nicotiana benthamiana. Four out of the ten amiRNAs expressed the corresponding amiRNA at high levels. Transgenic N. benthamiana plants were developed for the four amiRNAs targeting the P1 and NIb genes of CBSV and the P1 and CP genes of UCBSV and shown to accumulate miRNA products. Transgenic plants challenged with CBSV and UCBSV isolates showed resistance levels that ranged between ∼20–60% against CBSV and UCBSV and correlated with expression levels of the transgenically derived miRNAs. MicroRNAs targeting P1 and NIb of CBSV showed protection against CBSV and UCBSV, while amiRNAs targeting the P1 and CP of UCBSV showed protection against UCBSV but were less efficient against CBSV. These results indicate a potential application of amiRNAs for engineering resistance to CBSD-causing viruses in cassava. PMID:26912232

  4. Artificial microRNA-derived resistance to Cassava brown streak disease.

    PubMed

    Wagaba, Henry; Patil, Basavaprabhu L; Mukasa, Settumba; Alicai, Titus; Fauquet, Claude M; Taylor, Nigel J

    2016-05-01

    Artificial miRNAs (amiRNA) were generated targeting conserved sequences within the genomes of the two causal agents of Cassava brown streak disease (CBSD): Cassava brown streak virus (CBSV) and Ugandan cassava brown streak virus (UCBSV). Transient expression studies on ten amiRNAs targeting 21nt conserved sequences of P1(CBSV and UCBSV), P3(CBSV and UCBSV), CI(UCBSV), NIb(CBSV and UCBSV), CP(UCBSV) and the un-translated region (3'-UTR) were tested in Nicotiana benthamiana. Four out of the ten amiRNAs expressed the corresponding amiRNA at high levels. Transgenic N. benthamiana plants were developed for the four amiRNAs targeting the P1 and NIb genes of CBSV and the P1 and CP genes of UCBSV and shown to accumulate miRNA products. Transgenic plants challenged with CBSV and UCBSV isolates showed resistance levels that ranged between ∼20-60% against CBSV and UCBSV and correlated with expression levels of the transgenically derived miRNAs. MicroRNAs targeting P1 and NIb of CBSV showed protection against CBSV and UCBSV, while amiRNAs targeting the P1 and CP of UCBSV showed protection against UCBSV but were less efficient against CBSV. These results indicate a potential application of amiRNAs for engineering resistance to CBSD-causing viruses in cassava. PMID:26912232

  5. Transgenic RNA interference (RNAi)-derived field resistance to cassava brown streak disease.

    PubMed

    Ogwok, Emmanuel; Odipio, John; Halsey, Mark; Gaitán-Solís, Eliana; Bua, Anton; Taylor, Nigel J; Fauquet, Claude M; Alicai, Titus

    2012-12-01

    Cassava brown streak disease (CBSD), caused by the Ipomoviruses Cassava brown streak virus (CBSV) and Ugandan Cassava brown streak virus (UCBSV), is considered to be an imminent threat to food security in tropical Africa. Cassava plants were transgenically modified to generate small interfering RNAs (siRNAs) from truncated full-length (894-bp) and N-terminal (402-bp) portions of the UCBSV coat protein (ΔCP) sequence. Seven siRNA-producing lines from each gene construct were tested under confined field trials at Namulonge, Uganda. All nontransgenic control plants (n = 60) developed CBSD symptoms on aerial tissues by 6 months after planting, whereas plants transgenic for the full-length ΔCP sequence showed a 3-month delay in disease development, with 98% of clonal replicates within line 718-001 remaining symptom free over the 11-month trial. Reverse transcriptase-polymerase chain reaction (RT-PCR) diagnostics indicated the presence of UCBSV within the leaves of 57% of the nontransgenic controls, but in only two of 413 plants tested (0.5%) across the 14 transgenic lines. All transgenic plants showing CBSD were PCR positive for the presence of CBSV, except for line 781-001, in which 93% of plants were confirmed to be free of both pathogens. At harvest, 90% of storage roots from nontransgenic plants were severely affected by CBSD-induced necrosis. However, transgenic lines 718-005 and 718-001 showed significant suppression of disease, with 95% of roots from the latter line remaining free from necrosis and RT-PCR negative for the presence of both viral pathogens. Cross-protection against CBSV by siRNAs generated from the full-length UCBSV ΔCP confirms a previous report in tobacco. The information presented provides proof of principle for the control of CBSD by RNA interference-mediated technology, and progress towards the potential control of this damaging disease.

  6. Efficient transmission of Cassava brown streak disease viral pathogens by chip bud grafting

    PubMed Central

    2013-01-01

    Background Techniques to study plant viral diseases under controlled growth conditions are required to fully understand their biology and investigate host resistance. Cassava brown streak disease (CBSD) presents a major threat to cassava production in East Africa. No infectious clones of the causal viruses, Cassava brown streak virus (CBSV) or Ugandan cassava brown streak virus (UCBSV) are available, and mechanical transmission to cassava is not effective. An improved method for transmission of the viruses, both singly and as co-infections has been developed using bud grafts. Findings Axillary buds from CBSD symptomatic plants infected with virulent isolates of CBSV and UCBSV were excised and grafted onto 6–8 week old greenhouse-grown, disease-free cassava plants of cultivars Ebwanateraka, TME204 and 60444. Plants were assessed visually for development of CBSD symptoms and by RT-PCR for presence of the viruses in leaf and storage root tissues. Across replicated experiments, 70-100% of plants inoculated with CBSV developed CBSD leaf and stem symptoms 2–6 weeks after bud grafting. Infected plants showed typical, severe necrotic lesions in storage roots at harvest 12–14 weeks after graft inoculation. Sequential grafting of buds from plants infected with UCBSV followed 10–14 days later by buds carrying CBSV, onto the same test plant, resulted in 100% of the rootstocks becoming co-infected with both pathogens. This dual transmission rate was greater than that achieved by simultaneous grafting with UCBSV and CBSV (67%), or when grafting first with CBSV followed by UCBSV (17%). Conclusions The bud grafting method described presents an improved tool for screening cassava germplasm for resistance to CBSD causal viruses, and for studying pathogenicity of this important disease. Bud grafting provides new opportunities compared to previously reported top and side grafting systems. Test plants can be inoculated as young, uniform plants of a size easily handled in a

  7. Wheat streak mosaic: A classic case of plant disease impact on soil water content and crop water-use efficiency

    Technology Transfer Automated Retrieval System (TEKTRAN)

    In this article, we describe the relationship between wheat streak mosaic (WSM) severity and soil water content as a prime example of the effect of a plant disease on soil water status and its implications for irrigated agriculture. The present study was part of a larger investigation which included...

  8. A three-nucleotide mutation altering the Maize streak virus Rep pRBR-interaction motif reduces symptom severity in maize and partially reverts at high frequency without restoring pRBR-Rep binding.

    PubMed

    Shepherd, Dionne N; Martin, Darren P; McGivern, David R; Boulton, Margaret I; Thomson, Jennifer A; Rybicki, Edward P

    2005-03-01

    Geminivirus infectivity is thought to depend on interactions between the virus replication-associated proteins Rep or RepA and host retinoblastoma-related proteins (pRBR), which control cell-cycle progression. It was determined that the substitution of two amino acids in the Maize streak virus (MSV) RepA pRBR-interaction motif (LLCNE to LLCLK) abolished detectable RepA-pRBR interaction in yeast without abolishing infectivity in maize. Although the mutant virus was infectious in maize, it induced less severe symptoms than the wild-type virus. Sequence analysis of progeny viral DNA isolated from infected maize enabled detection of a high-frequency single-nucleotide reversion of C(601)A in the 3 nt mutated sequence of the Rep gene. Although it did not restore RepA-pRBR interaction in yeast, sequence-specific PCR showed that, in five out of eight plants, the C(601)A reversion appeared by day 10 post-inoculation. In all plants, the C(601)A revertant eventually completely replaced the original mutant population, indicating a high selection pressure for the single-nucleotide reversion. Apart from potentially revealing an alternative or possibly additional function for the stretch of DNA that encodes the apparently non-essential pRBR-interaction motif of MSV Rep, the consistent emergence and eventual dominance of the C(601)A revertant population might provide a useful tool for investigating aspects of MSV biology, such as replication, mutation and evolution rates, and complex population phenomena, such as competition between quasispecies and population turnover. PMID:15722543

  9. Transcriptional response of virus-infected cassava and identification of putative sources of resistance for cassava brown streak disease.

    PubMed

    Maruthi, M N; Bouvaine, Sophie; Tufan, Hale A; Mohammed, Ibrahim U; Hillocks, Rory J

    2014-01-01

    Cassava (Manihot esculenta) is a major food staple in sub-Saharan Africa, which is severely affected by cassava brown streak disease (CBSD). The aim of this study was to identify resistance for CBSD as well as to understand the mechanism of putative resistance for providing effective control for the disease. Three cassava varieties; Kaleso, Kiroba and Albert were inoculated with cassava brown streak viruses by grafting and also using the natural insect vector the whitefly, Bemisia tabaci. Kaleso expressed mild or no disease symptoms and supported low concentrations of viruses, which is a characteristic of resistant plants. In comparison, Kiroba expressed severe leaf but milder root symptoms, while Albert was susceptible with severe symptoms both on leaves and roots. Real-time PCR was used to estimate virus concentrations in cassava varieties. Virus quantities were higher in Kiroba and Albert compared to Kaleso. The Illumina RNA-sequencing was used to further understand the genetic basis of resistance. More than 700 genes were uniquely overexpressed in Kaleso in response to virus infection compared to Albert. Surprisingly, none of them were similar to known resistant gene orthologs. Some of the overexpressed genes, however, belonged to the hormone signalling pathways and secondary metabolites, both of which are linked to plant resistance. These genes should be further characterised before confirming their role in resistance to CBSD.

  10. Genetic analysis and molecular mapping of QTLs for resistance to rice black-streaked dwarf disease in rice.

    PubMed

    Zhou, Tong; Du, Linlin; Wang, Lijiao; Wang, Ying; Gao, Cunyi; Lan, Ying; Sun, Feng; Fan, Yongjian; Wang, Guoliang; Zhou, Yijun

    2015-07-22

    Rice black-streaked dwarf disease, caused by rice black-streaked dwarf virus (RBSDV), is transmitted by small brown planthoppers (Laodelphax striatellus Fallén, SBPH) and causes severe yield loss in epidemic years in China and other East Asian countries. Breeding for resistance to RBSDV is a promising strategy to control the disease. We identified Tetep that showed resistance to RBSDV using a field test and artificial inoculation test. An evaluation of the resistance mechanism revealed that Tetep was resistant to RBSDV but not to SBPH. Genetic analysis showed that the resistance of Tetep to RBSDV was controlled by quantitative trait loci (QTLs). Three new QTLs for RBSDV resistance were identified in this study, i.e., qRBSDV-3, qRBSDV-10 and qRBSDV-11. The LOD scores of qRBSDV-3, qRBSDV-10 and qRBSDV-11 were 4.07, 2.24 and 2.21, accounting for 17.5%, 0.3% and 12.4% of the total phenotypic variation, respectively. All the resistance loci identified in this study were associated with virus resistance genes. The alleles for enhancing resistance on chromosomes 3 and 11 originated from Tetep, whereas the other allele on chromosome 10 originated from a susceptible parent. The identified new resistance QTLs in this study are useful resources for efficiently breeding resistant rice cultivars to RBSDV.

  11. Genetic analysis and molecular mapping of QTLs for resistance to rice black-streaked dwarf disease in rice.

    PubMed

    Zhou, Tong; Du, Linlin; Wang, Lijiao; Wang, Ying; Gao, Cunyi; Lan, Ying; Sun, Feng; Fan, Yongjian; Wang, Guoliang; Zhou, Yijun

    2015-01-01

    Rice black-streaked dwarf disease, caused by rice black-streaked dwarf virus (RBSDV), is transmitted by small brown planthoppers (Laodelphax striatellus Fallén, SBPH) and causes severe yield loss in epidemic years in China and other East Asian countries. Breeding for resistance to RBSDV is a promising strategy to control the disease. We identified Tetep that showed resistance to RBSDV using a field test and artificial inoculation test. An evaluation of the resistance mechanism revealed that Tetep was resistant to RBSDV but not to SBPH. Genetic analysis showed that the resistance of Tetep to RBSDV was controlled by quantitative trait loci (QTLs). Three new QTLs for RBSDV resistance were identified in this study, i.e., qRBSDV-3, qRBSDV-10 and qRBSDV-11. The LOD scores of qRBSDV-3, qRBSDV-10 and qRBSDV-11 were 4.07, 2.24 and 2.21, accounting for 17.5%, 0.3% and 12.4% of the total phenotypic variation, respectively. All the resistance loci identified in this study were associated with virus resistance genes. The alleles for enhancing resistance on chromosomes 3 and 11 originated from Tetep, whereas the other allele on chromosome 10 originated from a susceptible parent. The identified new resistance QTLs in this study are useful resources for efficiently breeding resistant rice cultivars to RBSDV. PMID:26198760

  12. Genetic analysis and molecular mapping of QTLs for resistance to rice black-streaked dwarf disease in rice

    PubMed Central

    Zhou, Tong; Du, Linlin; Wang, Lijiao; Wang, Ying; Gao, Cunyi; Lan, Ying; Sun, Feng; Fan, Yongjian; Wang, Guoliang; Zhou, Yijun

    2015-01-01

    Rice black-streaked dwarf disease, caused by rice black-streaked dwarf virus (RBSDV), is transmitted by small brown planthoppers (Laodelphax striatellus Fallén, SBPH) and causes severe yield loss in epidemic years in China and other East Asian countries. Breeding for resistance to RBSDV is a promising strategy to control the disease. We identified Tetep that showed resistance to RBSDV using a field test and artificial inoculation test. An evaluation of the resistance mechanism revealed that Tetep was resistant to RBSDV but not to SBPH. Genetic analysis showed that the resistance of Tetep to RBSDV was controlled by quantitative trait loci (QTLs). Three new QTLs for RBSDV resistance were identified in this study, i.e., qRBSDV-3, qRBSDV-10 and qRBSDV-11. The LOD scores of qRBSDV-3, qRBSDV-10 and qRBSDV-11 were 4.07, 2.24 and 2.21, accounting for 17.5%, 0.3% and 12.4% of the total phenotypic variation, respectively. All the resistance loci identified in this study were associated with virus resistance genes. The alleles for enhancing resistance on chromosomes 3 and 11 originated from Tetep, whereas the other allele on chromosome 10 originated from a susceptible parent. The identified new resistance QTLs in this study are useful resources for efficiently breeding resistant rice cultivars to RBSDV. PMID:26198760

  13. Development of VNTR Markers to Assess Genetic Diversity of Mycosphaerella Fijiensis, the Causal Agent of Black Leaf Streak Disease in Bananas (Musa spp.)

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Mycosphaerella fijiensis is the causal agent of black leaf streak (BLS) disease in bananas. This pathogen threatens global banana production as the main export cultivars are highly susceptible. As a consequence, commercial banana plantations must be protected chemically with fungicides; up to 40 app...

  14. Variable Number of Tandem Repeat Markers in the Genome Sequence of Mycosphaerella Fijiensis, the Causal Agent of Black Leaf Streak Disease of Banana (Musa spp.)

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Mycosphaerella fijiensis, the causal agent of banana leaf streak disease (commonly known as black Sigatoka), is the most devastating pathogen attacking bananas (Musa spp). Recently the whole genome sequence of M. fijiensis became available. This sequence was screened for the presence of Variable Num...

  15. Maize-Pathogen Interactions: An Ongoing Combat from a Proteomics Perspective

    PubMed Central

    Pechanova, Olga; Pechan, Tibor

    2015-01-01

    Maize (Zea mays L.) is a host to numerous pathogenic species that impose serious diseases to its ear and foliage, negatively affecting the yield and the quality of the maize crop. A considerable amount of research has been carried out to elucidate mechanisms of maize-pathogen interactions with a major goal to identify defense-associated proteins. In this review, we summarize interactions of maize with its agriculturally important pathogens that were assessed at the proteome level. Employing differential analyses, such as the comparison of pathogen-resistant and susceptible maize varieties, as well as changes in maize proteomes after pathogen challenge, numerous proteins were identified as possible candidates in maize resistance. We describe findings of various research groups that used mainly mass spectrometry-based, high through-put proteomic tools to investigate maize interactions with fungal pathogens Aspergillus flavus, Fusarium spp., and Curvularia lunata, and viral agents Rice Black-streaked Dwarf Virus and Sugarcane Mosaic Virus. PMID:26633370

  16. The Dynamics and Environmental Influence on Interactions Between Cassava Brown Streak Disease and the Whitefly, Bemisia tabaci.

    PubMed

    Jeremiah, S C; Ndyetabula, I L; Mkamilo, G S; Haji, S; Muhanna, M M; Chuwa, C; Kasele, S; Bouwmeester, H; Ijumba, J N; Legg, J P

    2015-05-01

    Cassava brown streak disease (CBSD) is currently the most significant virus disease phenomenon affecting African agriculture. In this study, we report results from the most extensive set of field data so far presented for CBSD in Africa. From assessments of 515 farmers' plantings of cassava, incidence in the Coastal Zone of Tanzania (46.5% of plants; 87% of fields affected) was higher than in the Lake Zone (22%; 34%), but incidences for both zones were greater than previous published records. The whitefly vector, Bemisia tabaci, was more abundant in the Lake Zone than the Coastal Zone, the reverse of the situation reported previously, and increased B. tabaci abundance is driving CBSD spread in the Lake Zone. The altitudinal "ceiling" previously thought to restrict the occurrence of CBSD to regions <1,000 masl has been broken as a consequence of the greatly increased abundance of B. tabaci in mid-altitude areas. Among environmental variables analyzed, minimum temperature was the strongest determinant of CBSD incidence. B. tabaci in the Coastal and Lake Zones responded differently to environmental variables examined, highlighting the biological differences between B. tabaci genotypes occurring in these regions and the superior adaptation of B. tabaci in the Great Lakes region both to cassava and low temperature conditions. Regression analyses using multi-country data sets could be used to determine the potential environmental limits of CBSD. Approaches such as this offer potential for use in the development of predictive models for CBSD, which could strengthen country- and continent-level CBSD pandemic mitigation strategies. PMID:25585059

  17. Stolbur phytoplasma transmission to maize by Reptalus panzeri and the disease cycle of maize redness in Serbia.

    PubMed

    Jović, J; Cvrković, T; Mitrović, M; Krnjajić, S; Petrović, A; Redinbaugh, M G; Pratt, R C; Hogenhout, S A; Tosevski, I

    2009-09-01

    Maize redness (MR), induced by stolbur phytoplasma ('Candidatus Phytoplasma solani', subgroup 16SrXII-A), is characterized by midrib, leaf, and stalk reddening and abnormal ear development. MR has been reported from Serbia, Romania, and Bulgaria for 50 years, and recent epiphytotics reduced yields by 40 to 90% in South Banat District, Serbia. Potential vectors including leafhoppers and planthoppers in the order Hemiptera, suborder Auchenorrhyncha, were surveyed in MR-affected and low-MR-incidence fields, and 33 different species were identified. Only Reptalus panzeri populations displayed characteristics of a major MR vector. More R. panzeri individuals were present in MR-affected versus low-MR fields, higher populations were observed in maize plots than in field border areas, and peak population levels preceded the appearance of MR in late July. Stolbur phytoplasma was detected in 17% of R. panzeri adults using nested polymerase chain reaction but not in any other insects tested. Higher populations of R. panzeri nymphs were found on maize, Johnsongrass (Sorghum halepense), and wheat (Triticum aestivum) roots. Stolbur phytoplasma was detected in roots of these three plant species, as well as in R. panzeri L(3) and L(5) nymphs. When stolbur phytoplasma-infected R. panzeri L(3) nymphs were introduced into insect-free mesh cages containing healthy maize and wheat plants, 89 and 7%, respectively, became infected. These results suggest that the MR disease cycle in South Banat involves mid-July transmission of stolbur phytoplasma to maize by infected adult R. panzeri. The adult R. panzeri lay eggs on infected maize roots, and nymphs living on these roots acquire the phytoplasma from infected maize. The nymphs overwinter on the roots of wheat planted into maize fields in the autumn, allowing emergence of phytoplasma-infected vectors the following July.

  18. Necrotic streak disease of tomato in Florida caused by a new ilarvirus species related to Tulare apple mosaic virus

    Technology Transfer Automated Retrieval System (TEKTRAN)

    A novel ilarvirus for which the name Tomato necrotic streak virus (TomNSV) is proposed was detected in Florida tomato plants beginning in October 2013. Symptoms including necrosis of leaves, petioles and stems, and necrotic rings or spots on fruits were observed. This report provides an overview o...

  19. Screening for insect and disease resistance and aflatoxin accumulation in experimental maize hybrids

    Technology Transfer Automated Retrieval System (TEKTRAN)

    In order to develop new maize germplasm lines with resistance to multiple insect pests, disease, and aflatoxin accumulation in temperate region, a set of new experimental hybrids was made using exotic tropical and subtropical maize inbred lines. The evaluation of these breeding crosses for insect a...

  20. Developing maize germplasm lines with multiple insect and disease resistance and low aflatoxin contamination

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Yield and quality losses caused BY insects, diseases, and mycotoxin contaminations are the critical impediments for maize production under warm climate. In order to develop maize germplasm lines with resistance to multiple insect pests and aflatoxin accumulation, a set of 13 reciprocal breeding cro...

  1. Microchannel plate streak camera

    DOEpatents

    Wang, Ching L.

    1989-01-01

    An improved streak camera in which a microchannel plate electron multiplier is used in place of or in combination with the photocathode used in prior streak cameras. The improved streak camera is far more sensitive to photons (UV to gamma-rays) than the conventional x-ray streak camera which uses a photocathode. The improved streak camera offers gamma-ray detection with high temporal resolution. It also offers low-energy x-ray detection without attenuation inside the cathode. Using the microchannel plate in the improved camera has resulted in a time resolution of about 150 ps, and has provided a sensitivity sufficient for 1000 KeV x-rays.

  2. Microchannel plate streak camera

    DOEpatents

    Wang, C.L.

    1984-09-28

    An improved streak camera in which a microchannel plate electron multiplier is used in place of or in combination with the photocathode used in prior streak cameras. The improved streak camera is far more sensitive to photons (uv to gamma-rays) than the conventional x-ray streak camera which uses a photocathode. The improved streak camera offers gamma-ray detection with high temporal resolution. It also offers low-energy x-ray detection without attenuation inside the cathode. Using the microchannel plate in the improved camera has resulted in a time resolution of about 150 ps, and has provided a sensitivity sufficient for 1000 keV x-rays.

  3. Microchannel plate streak camera

    DOEpatents

    Wang, C.L.

    1989-03-21

    An improved streak camera in which a microchannel plate electron multiplier is used in place of or in combination with the photocathode used in prior streak cameras is disclosed. The improved streak camera is far more sensitive to photons (UV to gamma-rays) than the conventional x-ray streak camera which uses a photocathode. The improved streak camera offers gamma-ray detection with high temporal resolution. It also offers low-energy x-ray detection without attenuation inside the cathode. Using the microchannel plate in the improved camera has resulted in a time resolution of about 150 ps, and has provided a sensitivity sufficient for 1,000 KeV x-rays. 3 figs.

  4. A Biochemical Phenotype for a Disease Resistance Gene of Maize.

    PubMed Central

    Meeley, RB; Johal, GS; Briggs, SP; Walton, JD

    1992-01-01

    In maize, major resistance to the pathogenic fungus Cochliobolus (Helminthosporium) carbonum race 1 is determined by the dominant allele of the nuclear locus hm. The interaction between C. carbonum race 1 and maize is mediated by a pathogen-produced, low molecular weight compound called HC-toxin. We recently described an enzyme from maize, called HC-toxin reductase, that inactivates HC-toxin by pyridine nucleotide-dependent reduction of an essential carbonyl group. We now report that this enzyme activity is detectable only in extracts of maize that are resistant to C. carbonum race 1 (genotype Hm/Hm or Hm/hm). In several genetic analyses, in vitro HC-toxin reductase activity was without exception associated with resistance to C. carbonum race 1. The results indicate that detoxification of HC-toxin is the biochemical basis of Hm-specific resistance of maize to infection by C. carbonum race 1. PMID:12297630

  5. Wind Streak Changes

    NASA Technical Reports Server (NTRS)

    2004-01-01

    2 September 2004 This pair of Mars Global Surveyor (MGS) Mars Orbiter Camera (MOC) images shows changes in dark wind streak patterns that occurred between 5 April 1999 (image M00-00534) and 17 August 2004 (image R20-00901). Unlike the spaghetti-like streak patterns made by dust devils, these streaks all begin on their upwind ends as tapered forms that fan outward in the downwind direction, and they all indicate winds that blew from the same direction. In both cases, winds blew from the southeast (lower right) toward the northwest (upper left). These streaks and the small pedestal craters found among them occur in the Memnonia region of Mars near 5.9oS, 162.2oW. The 400 meter scale bar is about 437 yards long. Sunlight illuminates each scene from the upper left.

  6. Identification and fine-mapping of a QTL, qMrdd1, that confers recessive resistance to maize rough dwarf disease

    PubMed Central

    2013-01-01

    Background Maize rough dwarf disease (MRDD) is a devastating viral disease that results in considerable yield losses worldwide. Three major strains of virus cause MRDD, including maize rough dwarf virus in Europe, Mal de Río Cuarto virus in South America, and rice black-streaked dwarf virus in East Asia. These viral pathogens belong to the genus fijivirus in the family Reoviridae. Resistance against MRDD is a complex trait that involves a number of quantitative trait loci (QTL). The primary approach used to minimize yield losses from these viruses is to breed and deploy resistant maize hybrids. Results Of the 50 heterogeneous inbred families (HIFs), 24 showed consistent responses to MRDD across different years and locations, in which 9 were resistant and 15 were susceptible. We performed trait-marker association analysis on the 24 HIFs and found six chromosomal regions which were putatively associated with MRDD resistance. We then conducted QTL analysis and detected a major resistance QTL, qMrdd1, on chromosome 8. By applying recombinant-derived progeny testing to self-pollinated backcrossed families, we fine-mapped the qMrdd1 locus into a 1.2-Mb region flanked by markers M103-4 and M105-3. The qMrdd1 locus acted in a recessive manner to reduce the disease-severity index (DSI) by 24.2–39.3%. The genetic effect of qMrdd1 was validated using another F6 recombinant inbred line (RIL) population in which MRDD resistance was segregating and two genotypes at the qMrdd1 locus differed significantly in DSI values. Conclusions The qMrdd1 locus is a major resistance QTL, acting in a recessive manner to increase maize resistance to MRDD. We mapped qMrdd1 to a 1.2-Mb region, which will enable the introgression of qMrdd1-based resistance into elite maize hybrids and reduce MRDD-related crop losses. PMID:24079304

  7. Indirect selection for resistance to ear rot and leaf diseases in maize lines using biplots.

    PubMed

    Pereira, G S; Camargos, R B; Balestre, M; Von Pinho, R G; C Melo, W M

    2015-09-21

    Leaf disease and ear rot have caused reductions in maize yield in Brazil and other producer countries. Therefore, the aims of this study were to analyze the association between husked ear yield and the severity of maize white spot, gray leaf spot, helminthosporium, and ear rot caused by Fusarium verticillioides and Diplodia maydis using biplots in a mixed-model approach. The responses of 238 lines introduced to Brazil and four controls were evaluated using an incomplete block design with three replicates in two locations: Lavras and Uberlândia, Minas Gerais, Brazil. Two experiments were conducted in each location, one with F. verticillioides and the other with D. maydis. The mixed models elucidated the relationship between yield, leaf disease, and ear disease. Significant genotype x environment and genotype x pathogen interactions were observed. In conclusion, husked ear yield is more associated with ear rot than with the leaf diseases evaluated, justifying the indirect selection for resistance to kernel rot in maize-F. verticillioides and maize-D. maydis pathosystems by yield evaluation.

  8. Indirect selection for resistance to ear rot and leaf diseases in maize lines using biplots.

    PubMed

    Pereira, G S; Camargos, R B; Balestre, M; Von Pinho, R G; C Melo, W M

    2015-01-01

    Leaf disease and ear rot have caused reductions in maize yield in Brazil and other producer countries. Therefore, the aims of this study were to analyze the association between husked ear yield and the severity of maize white spot, gray leaf spot, helminthosporium, and ear rot caused by Fusarium verticillioides and Diplodia maydis using biplots in a mixed-model approach. The responses of 238 lines introduced to Brazil and four controls were evaluated using an incomplete block design with three replicates in two locations: Lavras and Uberlândia, Minas Gerais, Brazil. Two experiments were conducted in each location, one with F. verticillioides and the other with D. maydis. The mixed models elucidated the relationship between yield, leaf disease, and ear disease. Significant genotype x environment and genotype x pathogen interactions were observed. In conclusion, husked ear yield is more associated with ear rot than with the leaf diseases evaluated, justifying the indirect selection for resistance to kernel rot in maize-F. verticillioides and maize-D. maydis pathosystems by yield evaluation. PMID:26400335

  9. Interactive separating streak surfaces.

    PubMed

    Ferstl, Florian; Bürger, Kai; Theisel, Holger; Westermann, Rüdiger

    2010-01-01

    Streak surfaces are among the most important features to support 3D unsteady flow exploration, but they are also among the computationally most demanding. Furthermore, to enable a feature driven analysis of the flow, one is mainly interested in streak surfaces that show separation profiles and thus detect unstable manifolds in the flow. The computation of such separation surfaces requires to place seeding structures at the separation locations and to let the structures move correspondingly to these locations in the unsteady flow. Since only little knowledge exists about the time evolution of separating streak surfaces, at this time, an automated exploration of 3D unsteady flows using such surfaces is not feasible. Therefore, in this paper we present an interactive approach for the visual analysis of separating streak surfaces. Our method draws upon recent work on the extraction of Lagrangian coherent structures (LCS) and the real-time visualization of streak surfaces on the GPU. We propose an interactive technique for computing ridges in the finite time Lyapunov exponent (FTLE) field at each time step, and we use these ridges as seeding structures to track streak surfaces in the time-varying flow. By showing separation surfaces in combination with particle trajectories, and by letting the user interactively change seeding parameters such as particle density and position, visually guided exploration of separation profiles in 3D is provided. To the best of our knowledge, this is the first time that the reconstruction and display of semantic separable surfaces in 3D unsteady flows can be performed interactively, giving rise to new possibilities for gaining insight into complex flow phenomena.

  10. Layers and Streaks

    NASA Technical Reports Server (NTRS)

    2004-01-01

    6 December 2004 This Mars Global Surveyor (MGS) Mars Orbiter Camera (MOC) image shows an outcrop of light-toned layered rock and a plethora of dark streaks on the floor of a crater in southern Noachis Terra. The streaks were created by dozens of dust devils which disrupted and perhaps removed some of the thin layer of dust that coats the surface. This view is located near 55.5oS, 333.4oW. The scene is illuminated by sunlight from the lower right. The 500 meter scale bar is approximately 547 yards long.

  11. Rhamnolipid Biosurfactant against Fusarium verticillioides to Control Stalk and Ear Rot Disease of Maize

    PubMed Central

    Borah, Siddhartha N.; Goswami, Debahuti; Sarma, Hridip K.; Cameotra, Swaranjit S.; Deka, Suresh

    2016-01-01

    Antifungal activity of rhamnolipids (RLs) has been widely studied against many plant pathogenic fungi, but not against Fusarium verticillioides, a major pathogen of maize (Zea mays L.). F. verticillioides causes stalk and ear rot of maize or asymptomatically colonizes the plant and ears resulting in moderate to heavy crop loss throughout the world. F. verticillioides produces fumonisin mycotoxins, reported carcinogens, which makes the contaminated ears unsuitable for consumption. In this study, the RL produced using glucose as sole carbon source was characterized by FTIR and LCMS analyses and its antifungal activity against F. verticillioides was evaluated in vitro on maize stalks and seeds. Further, the effect of RL on the mycelia of F. verticillioides was investigated by scanning electron microscopy which revealed visible damage to the mycelial structure as compared to control samples. In planta, treatment of maize seeds with a RL concentration of 50 mg l-1 resulted in improved biomass and fruiting compared to those of healthy control plants and complete suppression of characteristic disease symptoms and colonization of maize by F. verticillioides. The study highlights the potential of RLs to be used for an effective biocontrol strategy against colonization of maize plant by F. verticillioides. PMID:27708638

  12. Maize prolamins could induce a gluten-like cellular immune response in some celiac disease patients.

    PubMed

    Ortiz-Sánchez, Juan P; Cabrera-Chávez, Francisco; de la Barca, Ana M Calderón

    2013-10-21

    Celiac disease (CD) is an autoimmune-mediated enteropathy triggered by dietary gluten in genetically prone individuals. The current treatment for CD is a strict lifelong gluten-free diet. However, in some CD patients following a strict gluten-free diet, the symptoms do not remit. These cases may be refractory CD or due to gluten contamination; however, the lack of response could be related to other dietary ingredients, such as maize, which is one of the most common alternatives to wheat used in the gluten-free diet. In some CD patients, as a rare event, peptides from maize prolamins could induce a celiac-like immune response by similar or alternative pathogenic mechanisms to those used by wheat gluten peptides. This is supported by several shared features between wheat and maize prolamins and by some experimental results. Given that gluten peptides induce an immune response of the intestinal mucosa both in vivo and in vitro, peptides from maize prolamins could also be tested to determine whether they also induce a cellular immune response. Hypothetically, maize prolamins could be harmful for a very limited subgroup of CD patients, especially those that are non-responsive, and if it is confirmed, they should follow, in addition to a gluten-free, a maize-free diet.

  13. Maize Prolamins Could Induce a Gluten-Like Cellular Immune Response in Some Celiac Disease Patients

    PubMed Central

    Ortiz-Sánchez, Juan P.; Cabrera-Chávez, Francisco; Calderón de la Barca, Ana M.

    2013-01-01

    Celiac disease (CD) is an autoimmune-mediated enteropathy triggered by dietary gluten in genetically prone individuals. The current treatment for CD is a strict lifelong gluten-free diet. However, in some CD patients following a strict gluten-free diet, the symptoms do not remit. These cases may be refractory CD or due to gluten contamination; however, the lack of response could be related to other dietary ingredients, such as maize, which is one of the most common alternatives to wheat used in the gluten-free diet. In some CD patients, as a rare event, peptides from maize prolamins could induce a celiac-like immune response by similar or alternative pathogenic mechanisms to those used by wheat gluten peptides. This is supported by several shared features between wheat and maize prolamins and by some experimental results. Given that gluten peptides induce an immune response of the intestinal mucosa both in vivo and in vitro, peptides from maize prolamins could also be tested to determine whether they also induce a cellular immune response. Hypothetically, maize prolamins could be harmful for a very limited subgroup of CD patients, especially those that are non-responsive, and if it is confirmed, they should follow, in addition to a gluten-free, a maize-free diet. PMID:24152750

  14. Streak camera receiver definition study

    NASA Technical Reports Server (NTRS)

    Johnson, C. B.; Hunkler, L. T., Sr.; Letzring, S. A.; Jaanimagi, P.

    1990-01-01

    Detailed streak camera definition studies were made as a first step toward full flight qualification of a dual channel picosecond resolution streak camera receiver for the Geoscience Laser Altimeter and Ranging System (GLRS). The streak camera receiver requirements are discussed as they pertain specifically to the GLRS system, and estimates of the characteristics of the streak camera are given, based upon existing and near-term technological capabilities. Important problem areas are highlighted, and possible corresponding solutions are discussed.

  15. A predicted protein interactome identifies conserved global networks and disease resistance subnetworks in maize

    PubMed Central

    Musungu, Bryan; Bhatnagar, Deepak; Brown, Robert L.; Fakhoury, Ahmad M.; Geisler, Matt

    2015-01-01

    Interactomes are genome-wide roadmaps of protein-protein interactions. They have been produced for humans, yeast, the fruit fly, and Arabidopsis thaliana and have become invaluable tools for generating and testing hypotheses. A predicted interactome for Zea mays (PiZeaM) is presented here as an aid to the research community for this valuable crop species. PiZeaM was built using a proven method of interologs (interacting orthologs) that were identified using both one-to-one and many-to-many orthology between genomes of maize and reference species. Where both maize orthologs occurred for an experimentally determined interaction in the reference species, we predicted a likely interaction in maize. A total of 49,026 unique interactions for 6004 maize proteins were predicted. These interactions are enriched for processes that are evolutionarily conserved, but include many otherwise poorly annotated proteins in maize. The predicted maize interactions were further analyzed by comparing annotation of interacting proteins, including different layers of ontology. A map of pairwise gene co-expression was also generated and compared to predicted interactions. Two global subnetworks were constructed for highly conserved interactions. These subnetworks showed clear clustering of proteins by function. Another subnetwork was created for disease response using a bait and prey strategy to capture interacting partners for proteins that respond to other organisms. Closer examination of this subnetwork revealed the connectivity between biotic and abiotic hormone stress pathways. We believe PiZeaM will provide a useful tool for the prediction of protein function and analysis of pathways for Z. mays researchers and is presented in this paper as a reference tool for the exploration of protein interactions in maize. PMID:26089837

  16. A new African streak virus species from Nigeria.

    PubMed

    Oluwafemi, Sunday; Varsani, Arvind; Monjane, Adérito L; Shepherd, Dionne N; Owor, Betty E; Rybicki, Edward P; Martin, Darren P

    2008-01-01

    The African streak viruses (AfSVs) are a diverse group of mastrevirus species (family Geminiviridae) that infect a wide variety of annual and perennial grass species across the African continent and its nearby Indian Ocean islands. Six AfSV species (of which maize streak virus is the best known) have been described. Here we report the full genome sequences of eight isolates of a seventh AfSV species: Urochloa streak virus (USV), sampled from various locations in Nigeria. Despite there being good evidence of recombination in many other AfSV species, we found no convincing evidence that any of the USV sequences were either inter- or intra-species recombinants. The USV isolates, all of which appear to be variants of the same strain (their genome sequences are all more than 98% identical), share less than 69% nucleotide sequence identity with other currently described AfSV species. PMID:18521534

  17. Oxidative stress response of Mycosphaerella fijiensis, the causal agent of black leaf streak disease in banana plants, to hydrogen peroxide and paraquat.

    PubMed

    Beltrán-García, Miguel J; Manzo-Sanchez, Gilberto; Guzmán-González, Salvador; Arias-Castro, Carlos; Rodríguez-Mendiola, Martha; Avila-Miranda, Martin; Ogura, Tetsuya

    2009-07-01

    Mycosphaerella fijiensis causes black leaf streak disease in banana and plantain. This fungus is usually attacked by reactive oxygen species secreted by the plant or during exposure to fungicide, however, little is known about the antioxidant response of the fungus. In this study, mycelia were observed to totally decompose 30 mmol/L of hydrogen peroxide (H2O2) within 120 min, liberating oxygen bubbles, and also to survive in concentrations as high as 100 mmol/L H2O2. The oxidative stress responses to H2O2, paraquat, and hydroquinone were characterized in terms of the activities of catalase and superoxide dismutase (SOD). Two active catalase bands were seen in native PAGE induced by H2O2. Band I had monofunctional activity and band II had bifunctional catalase-peroxidase activity. Two isozymes of SOD, distinguishable by their cyanide sensitivity, were found; CuZnSOD was the main one. The combination of H2O2 and 3-aminotriazole reduced the accumulation of biomass up to 40% compared with exposure to H2O2 alone, suggesting that catalase is important for the rapid decomposition of H2O2 and has a direct bearing on cell viability. The results also suggest that the superoxide anion formed through the redox of paraquat and hydroquinone has a greater effect than H2O2 on the cellular viability of M. fijiensis. PMID:19767862

  18. Oxidative stress response of Mycosphaerella fijiensis, the causal agent of black leaf streak disease in banana plants, to hydrogen peroxide and paraquat.

    PubMed

    Beltrán-García, Miguel J; Manzo-Sanchez, Gilberto; Guzmán-González, Salvador; Arias-Castro, Carlos; Rodríguez-Mendiola, Martha; Avila-Miranda, Martin; Ogura, Tetsuya

    2009-07-01

    Mycosphaerella fijiensis causes black leaf streak disease in banana and plantain. This fungus is usually attacked by reactive oxygen species secreted by the plant or during exposure to fungicide, however, little is known about the antioxidant response of the fungus. In this study, mycelia were observed to totally decompose 30 mmol/L of hydrogen peroxide (H2O2) within 120 min, liberating oxygen bubbles, and also to survive in concentrations as high as 100 mmol/L H2O2. The oxidative stress responses to H2O2, paraquat, and hydroquinone were characterized in terms of the activities of catalase and superoxide dismutase (SOD). Two active catalase bands were seen in native PAGE induced by H2O2. Band I had monofunctional activity and band II had bifunctional catalase-peroxidase activity. Two isozymes of SOD, distinguishable by their cyanide sensitivity, were found; CuZnSOD was the main one. The combination of H2O2 and 3-aminotriazole reduced the accumulation of biomass up to 40% compared with exposure to H2O2 alone, suggesting that catalase is important for the rapid decomposition of H2O2 and has a direct bearing on cell viability. The results also suggest that the superoxide anion formed through the redox of paraquat and hydroquinone has a greater effect than H2O2 on the cellular viability of M. fijiensis.

  19. Plant-Plant-Microbe Mechanisms Involved in Soil-Borne Disease Suppression on a Maize and Pepper Intercropping System

    PubMed Central

    Mei, Xinyue; Liao, Jingjing; Ding, Xupo; Deng, Weiping; Fan, Limin; He, Xiahong; Vivanco, Jorge M.; Li, Chengyun; Zhu, Youyong; Zhu, Shusheng

    2014-01-01

    Background Intercropping systems could increase crop diversity and avoid vulnerability to biotic stresses. Most studies have shown that intercropping can provide relief to crops against wind-dispersed pathogens. However, there was limited data on how the practice of intercropping help crops against soil-borne Phytophthora disease. Principal Findings Compared to pepper monoculture, a large scale intercropping study of maize grown between pepper rows reduced disease levels of the soil-borne pepper Phytophthora blight. These reduced disease levels of Phytophthora in the intercropping system were correlated with the ability of maize plants to form a “root wall” that restricted the movement of Phytophthora capsici across rows. Experimentally, it was found that maize roots attracted the zoospores of P. capsici and then inhibited their growth. When maize plants were grown in close proximity to each other, the roots produced and secreted larger quantities of 2,4-dihydroxy-7-methoxy-2H-1,4-benzoxazin-3(4H)-one (DIMBOA) and 6-methoxy-2-benzoxazolinone (MBOA). Furthermore, MBOA, benzothiazole (BZO), and 2-(methylthio)-benzothiazole (MBZO) were identified in root exudates of maize and showed antimicrobial activity against P. capsici. Conclusions Maize could form a “root wall” to restrict the spread of P. capsici across rows in maize and pepper intercropping systems. Antimicrobe compounds secreted by maize root were one of the factors that resulted in the inhibition of P. capsici. These results provide new insights into plant-plant-microbe mechanisms involved in intercropping systems. PMID:25551554

  20. Triton's streaks as windblown dust

    NASA Technical Reports Server (NTRS)

    Sagan, Carl; Chyba, Christopher

    1990-01-01

    Explanations for the surface streaks observed by Voyager 2 on Triton's southern hemisphere are discussed. It is shown that, despite Triton's tenuous atmosphere, low-cohesion dust trains with diameters of about 5 micron or less may be carried into suspension by aeolian surface shear stress, given expected geostrophic wind speeds of about 10 m/s. For geyser-like erupting dust plumes, it is shown that dust-settling time scales and expected wind velocities can produce streaks with length scales in good agreement with those of the streaks. Thus, both geyserlike eruptions or direct lifting by surface winds appear to be viable mechanisms for the origin of the streaks.

  1. Bright Streak on Amalthea

    NASA Technical Reports Server (NTRS)

    2000-01-01

    These two images of Jupiter's small, irregularly shaped moon Amalthea, obtained by the camera onboard NASA's Galileo spacecraft in August 1999(left) and November 1999 (right), form a 'stereo pair' that helps scientists determine this moon's shape and the topography of its surface features. Features as small as 3.8 kilometers (2.4 miles) across can be resolved in these images, making them among the highest-resolution images ever taken of Amalthea.

    The large impact crater visible in both images, near the right-hand edge of Amalthea's disk, is about 40 kilometers (about 29 miles) across; two ridges, tall enough to cast shadows, extend from the top of the crater in a V-shape reminiscent of a 'rabbit ears' television antenna. To the left of these ridges, in the top center portion of Amalthea's disk, is a second large impact crater similar in size to the first crater. To the left of this second crater is a linear 'streak' of relatively bright material about 50 kilometers (31 miles) long. In previous spacecraft images of Amalthea taken from other viewing directions, this bright feature was thought to be a small, round, bright 'spot' and was given the name Ida. These new images reveal for the first time that Ida is actually a long, linear 'streak.' This bright streak may represent material ejected during the formation of the adjacent impact crater, or it may just mark the crest of a local ridge. Other patches of relatively bright material can be seen elsewhere on Amalthea's disk, although none of these other bright spots has Ida's linear shape.

    In both images, sunlight is coming from the left and north is approximately up. Note that the north pole of Amalthea is missing in the right-hand image (it was cut off by the edge of the camera frame). The bright streak, Ida, is on the side of the moon that faces permanently away from Jupiter, and the crater near the right-hand edge of the disk is in the center of Amalthea's leading side (the side of the moon that 'leads

  2. Streaking into Middle School Science: The Dell Streak Pilot Project

    ERIC Educational Resources Information Center

    Austin, Susan Eudy

    2012-01-01

    A case study is conducted implementing the Dell Streak seven-inch android device into eighth grade science classes of one teacher in a rural middle school in the Piedmont region of North Carolina. The purpose of the study is to determine if the use of the Dell Streaks would increase student achievement on standardized subject testing, if the…

  3. The development and application of a Dot-ELISA assay for diagnosis of southern rice black-streaked dwarf disease in the field.

    PubMed

    Wang, Zhenchao; Yu, Dandan; Li, Xiangyang; Zeng, Mengjiao; Chen, Zhuo; Bi, Liang; Liu, Jiaju; Jin, Linhong; Hu, Deyu; Yang, Song; Song, Baoan

    2012-01-01

    Outbreaks of the southern rice black-streaked dwarf virus (SRBSDV) have caused significant crop losses in southern China in recent years, especially in 2010. There are no effective, quick and practicable methods for the diagnosis of rice dwarf disease that can be used in the field. Traditional reverse transcription-polymerase chain reaction (RT-PCR) methodology is accurate but requires expensive reagents and instruments, as well as complex procedures that limit its applicability for field tests. To develop a sensitive and reliable assay for routine laboratory diagnosis, a rapid dot enzyme-linked immunosorbent assay (dot-ELISA) method was developed for testing rice plants infected by SRBSDV. Based on anti-SRBSDV rabbit antiserum, this new dot-ELISA was highly reliable, sensitive and specific toward SRBSDV. The accuracy of two blotting media, polyvinylidene fluoride membrane (PVDF membrane) and nitrocellulose filter membrane (NC membrane), was compared. In order to facilitate the on-site diagnosis, three county laboratories were established in Shidian (Yunnan province), Jianghua (Hunan Province) and Libo (Guizhou province). Suspected rice cases from Shidian, Yuanjiang and Malipo in Yunnan province were tested and some determined to be positive for SRBSDV by the dot-ELISA and confirmed by the One Step RT-PCR method. To date, hundreds of suspected rice samples collected from 61 districts in southwestern China have been tested, among which 55 districts were found to have rice crops infected by SRBSDV. Furthermore, the test results in the county laboratories showed that Libo, Dehong (suspected samples were sent to Shidian) and Jianghua were experiencing a current SRBSDV outbreak.

  4. Distribution of disease symptoms and mycotoxins in maize ears infected by Fusarium culmorum and Fusarium graminearum.

    PubMed

    Oldenburg, Elisabeth; Ellner, Frank

    2015-08-01

    Red ear rot an important disease of maize cultivated in Europe is caused by toxigenic Fusarium species like Fusarium graminearum and Fusarium culmorum. To get detailed information on the time course of the infection process leading to the accumulation of Fusarium mycotoxins in maize ears, a field study was conducted over 2 years with two maize varieties, which were inoculated with F. culmorum or F. graminearum isolates at the stage of female flowering. Every fortnight after inoculation, infection and contamination progress in the ears was followed by visually evaluating disease signs and analysing Fusarium toxin concentrations in the infected ear tissues. In principle, infection and mycotoxin distribution were similar in respect of pathogens, varieties, and years. External infection symptoms showing some small pale or brown-marbled kernels with dark brown pedicels were mainly seen at the ear tip, whereas internal infection symptoms on the rachis were much more pronounced and spread in the upper half showing greyish brownish or pink discoloration of the pith. Well correlated with disease symptoms, a top-down gradient from high to low toxin levels within the ear with considerably higher concentrations in the rachis compared with the kernels was observed. It is suggested that both Fusarium pathogens primarily infect the rachis from the tip toward the bottom, whereas the kernels are subsequently infected via the rachillae connected to the rachis. A special focus on the pronounced disease symptoms visible in the rachis may be an approach to improve the evaluation of maize-genotype susceptibility against red ear rot pathogens. It has to be underlined that the accumulation of Fusarium mycotoxins in the rachis greatly accelerated 6 weeks after inoculation; therefore, highest contamination risk is indicated for feedstuffs containing large amounts of rachis (e.g., corn cob mix), especially when cut late in growing season.

  5. Distribution of disease symptoms and mycotoxins in maize ears infected by Fusarium culmorum and Fusarium graminearum.

    PubMed

    Oldenburg, Elisabeth; Ellner, Frank

    2015-08-01

    Red ear rot an important disease of maize cultivated in Europe is caused by toxigenic Fusarium species like Fusarium graminearum and Fusarium culmorum. To get detailed information on the time course of the infection process leading to the accumulation of Fusarium mycotoxins in maize ears, a field study was conducted over 2 years with two maize varieties, which were inoculated with F. culmorum or F. graminearum isolates at the stage of female flowering. Every fortnight after inoculation, infection and contamination progress in the ears was followed by visually evaluating disease signs and analysing Fusarium toxin concentrations in the infected ear tissues. In principle, infection and mycotoxin distribution were similar in respect of pathogens, varieties, and years. External infection symptoms showing some small pale or brown-marbled kernels with dark brown pedicels were mainly seen at the ear tip, whereas internal infection symptoms on the rachis were much more pronounced and spread in the upper half showing greyish brownish or pink discoloration of the pith. Well correlated with disease symptoms, a top-down gradient from high to low toxin levels within the ear with considerably higher concentrations in the rachis compared with the kernels was observed. It is suggested that both Fusarium pathogens primarily infect the rachis from the tip toward the bottom, whereas the kernels are subsequently infected via the rachillae connected to the rachis. A special focus on the pronounced disease symptoms visible in the rachis may be an approach to improve the evaluation of maize-genotype susceptibility against red ear rot pathogens. It has to be underlined that the accumulation of Fusarium mycotoxins in the rachis greatly accelerated 6 weeks after inoculation; therefore, highest contamination risk is indicated for feedstuffs containing large amounts of rachis (e.g., corn cob mix), especially when cut late in growing season. PMID:25904523

  6. Cerberus Wind Streaks

    NASA Technical Reports Server (NTRS)

    2002-01-01

    (Released 6 May 2002) The Science Cerberus is a dark region on Mars that has shrunk down from a continuous length of about 1000 km to roughly three discontinuous spots a few 100 kms in length in less than 20 years. There are two competing processes at work in the Cerberus region that produce the bright and dark features seen in this THEMIS image. Bright dust settles out of the atmosphere, especially after global dust storms, depositing a layer just thick enough to brighten the dark surfaces. Deposition occurs preferentially in the low wind 'shadow zones' within craters and downwind of crater rims, producing the bright streaks. The direction of the streaks clearly indicates that the dominant winds come from the northeast. Dust deposition would completely blot out the dark areas if it were not for the action of wind-blown sand grains scouring the surface and lifting the dust back into the atmosphere. Again, the shadow zones are protected from the blowing sand, preserving the bright layer of dust. Also visible in this image are lava flow features extending from the flanks of the huge Elysium volcanoes to the northwest. Two shallow channels and a raised flow lobe are just barely discernable. The lava channel in the middle of the image crosses the boundary of the bright and dark surfaces without any obvious change in its morphology. This demonstrates that the bright dust layer is very thin in this location, perhaps as little as a few millimeters. The Story Mars is an ever-changing land of spectacular contrasts. This THEMIS image shows the Cerberus region of Mars, a dark area located near the Elysium volcanoes and fittingly named after the three-headed, dragon-tailed dog who guards the door of the underworld. Two opposing processes are at work here: a thin layer of dust falling from the atmosphere and/or dust storms creating brighter surface areas (e.g. the top left portion of this image) and dust being scoured away by the action of the Martian wind disturbing the sand

  7. Circles and Streaks

    NASA Technical Reports Server (NTRS)

    2003-01-01

    MGS MOC Release No. MOC2-544, 14 November 2003

    This Mars Global Surveyor (MGS) Mars Orbiter Camera (MOC) image, acquired less than a week ago on 8 November 2003, shows a typical southern middle-to-high latitude scene at this time of year. It is summer in the southern hemisphere, and regions such as Promethei Terra, where this image was acquired, are being streaked by dust devils that remove or disrupt the coating of dust that was deposited over the region in the previous autumn or winter. While no active dust devils were captured in this scene, their tell-tale tracks are scratched all across the image. The circular features are the sites of buried meteor impact craters; their rims form dark rings; the material that fills the craters has become cracked. This picture is located near 68.1oS, 247.9oW. The area shown is approximately 3 km (1.9 mi) across and is illuminated by sunlight from the upper left.

  8. Mapping QTL conferring resistance in maize to gray leaf spot disease caused by Cercospora zeina

    PubMed Central

    2014-01-01

    Background Gray leaf spot (GLS) is a globally important foliar disease of maize. Cercospora zeina, one of the two fungal species that cause the disease, is prevalent in southern Africa, China, Brazil and the eastern corn belt of the USA. Identification of QTL for GLS resistance in subtropical germplasm is important to support breeding programmes in developing countries where C. zeina limits production of this staple food crop. Results A maize RIL population (F7:S6) from a cross between CML444 and SC Malawi was field-tested under GLS disease pressure at five field sites over three seasons in KwaZulu-Natal, South Africa. Thirty QTL identified from eleven field trials (environments) were consolidated to seven QTL for GLS resistance based on their expression in at least two environments and location in the same core maize bins. Four GLS resistance alleles were derived from the more resistant parent CML444 (bin 1.10, 4.08, 9.04/9.05, 10.06/10.07), whereas the remainder were from SC Malawi (bin 6.06/6.07, 7.02/7.03, 9.06). QTLs in bin 4.08 and bin 6.06/6.07 were also detected as joint QTLs, each explained more than 11% of the phenotypic variation, and were identified in four and seven environments, respectively. Common markers were used to allocate GLS QTL from eleven previous studies to bins on the IBM2005 map, and GLS QTL “hotspots” were noted. Bin 4.08 and 7.02/7.03 GLS QTL from this study overlapped with hotspots, whereas the bin 6.06/6.07 and bin 9.06 QTLs appeared to be unique. QTL for flowering time (bin 1.07, 4.09) in this population did not correspond to QTL for GLS resistance. Conclusions QTL mapping of a RIL population from the subtropical maize parents CML444 and SC Malawi identified seven QTL for resistance to gray leaf spot disease caused by C. zeina. These QTL together with QTL from eleven studies were allocated to bins on the IBM2005 map to provide a basis for comparison. Hotspots of GLS QTL were identified on chromosomes one, two, four, five and

  9. Stolbur Phytoplasma Transmission to Maize by Reptalus panzeri and the Disease Cycle of Maize Redness in Serbia

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Maize redness (MR), induced by stolbur phytoplasma (Candidatus Phytoplasma solani, subgroup 16SrXII-A), is characterized by midrib, leaf and stalk reddening and abnormal ear development. MR has been reported from Serbia, Romania and Bulgaria for 50 years, and recent epiphytotics reduced yields by 4...

  10. A survey of pre-harvest ear rot diseases of maize and associated mycotoxins in south and central Zambia.

    PubMed

    Mukanga, Mweshi; Derera, John; Tongoona, Pangirayi; Laing, Mark D

    2010-07-15

    Maize ear rots reduce grain yield and quality with implication on food security and health. Some of the pathogenic fungi produce mycotoxins in maize grain posing a health risk to humans and livestock. Unfortunately, the levels of ear rot and mycotoxin infection in grain produced by subsistence farmers in sub-Saharan countries are not known. A survey was thus conducted to determine the prevalence of the ear rot problem and levels of mycotoxins in maize grain. A total of 114 farmsteads were randomly sampled from 11 districts in Lusaka and southern provinces in Zambia during 2006. Ten randomly picked cobs were examined per farmstead and the ear rot disease incidence and severity were estimated on site. This was followed by the standard seed health testing procedures for fungal isolation in the laboratory. Results indicated that the dominant ear rots were caused by Fusarium and Stenocarpella. Incidence of Fusarium verticillioides ranged from 2 to 21%, whereas that of Stenocarpella maydis reached 37% on ear rot diseased maize grain. In addition, 2-7% F. verticillioides, and 3-18% Aspergillus flavus, respectively, were recovered from seemingly healthy maize grain. The mean rank of fungal species, from highest to lowest, was F. verticillioides, S. maydis, A. flavus, Fusarium graminearum, Aspergillus niger, Penicillium spp., Botrydiplodia spp., and Cladosporium spp. The direct competitive ELISA-test indicated higher levels of fumonisins than aflatoxins in pre-harvest maize grain samples. The concentration of fumonisins from six districts, and aflatoxin from two districts, was 10-fold higher than 2 ppm and far higher than 2 ppb maximum daily intake recommended by the FAO/WHO. The study therefore suggested that subsistence farmers and consumers in this part of Zambia, and maybe also in similar environments in sub-Saharan Africa, might be exposed to dangerous levels of mycotoxins due to the high levels of ear rot infections in maize grain.

  11. 1-D Tremor Streaks: Implications for a Streak Source Model

    NASA Astrophysics Data System (ADS)

    Houston, H.; Ghosh, A.; Vidale, J. E.

    2009-12-01

    Recent observations of non-volcanic tremor in Cascadia and Japan show “streaks” of tremor moving up and down dip in a convergence-parallel direction at “driving velocities” (i.e., 30 to 120 km/hr). Streak lengths of 30 to 40 km are occasionally observed. We explore the implications of these observations for a source model and spectrum of tremor. Key elements involve the extreme geometry and slow “rupture velocity” implied by the streaks. The source spectrum of tremor and other ETS seismic radiation exhibits a spectral falloff roughly as the inverse of frequency (1/f) in contrast to that of earthquakes, which follow a spectral falloff of 1/f squared above a corner frequency. Nevertheless, several observations suggest that the deformation that generates tremor is shear slip in the plate convergence direction. A fundamental question, then, has been what slip source could produce such an observed 1/f falloff over a wide frequency range. We propose a kinematic model, consistent with the 1-D geometry of the tremor streaks, in which fault displacement and width are strongly limited and rupture growth occurs only along fault length, which is oriented in a convergence-parallel direction (up or down dip). This is a version of the well-known Haskell model in which the durations of the two boxcars are very different. A 1/f spectral falloff holds between the corner frequencies associated with the two durations. Thus, the frequency range of the observed 1/f spectral falloff of tremor provides constraints on the durations of the boxcars. Further constraints involve the maximum likely displacement in an ETS event, the rupture velocities of the streaks, and the moment release rate. The narrow streak geometry implies fairly high strain and stress drops, in contrast to the low overall stress drops inferred from tidal modulation of tremor and the low strain across the entire ETS region. The observation of tremor streaks migrating at 10's of km/hour, in conjunction with the

  12. Dust streaks on Mars: Colors and photometry

    NASA Technical Reports Server (NTRS)

    Thomas, P.

    1984-01-01

    Photometric studies of crater related bright and dark streaks have strongly supported the hypothesis that the bright streaks are excess dust deposits and dark streaks are erosional windows in a partial dust cover. Red-blue (and red-violet) plots show that bright streaks are consistent with mosaics of bright red dust and background material. Here the plains are also consistent with a partial dust cover; the dark streak is the least covered area. Bright and dark streaks both reverse contrast relative to surrounding plains at phase angles over 100 deg in violet filter images. The similar phase behavior of both bright and dark streaks supports the idea that they are both changes in the amount of dust cover. Red-violet plots of bright streaks are most easily explained by mosaics of optically thick dust and plains material. Lengths of bright streaks are independent of their contrasts. This suggests the streak deposition, if in the mosaic patterns indicated above, is a function of available sites of deposition, rather than atmospheric dust loading. Contrasts of dark streaks with plains indicate the plains have fractional dust covers nealy as great as the maximum additional cover in bright streaks. The bright streaks thus store little of the global supply of dust.

  13. Impact of Cell Wall Composition on Maize Resistance to Pests and Diseases

    PubMed Central

    Santiago, Rogelio; Barros-Rios, Jaime; Malvar, Rosa A.

    2013-01-01

    In cereals, the primary cell wall is built of a skeleton of cellulosic microfibrils embedded in a matrix of hemicelluloses and smaller amounts of pectins, glycoproteins and hydroxycinnamates. Later, during secondary wall development, p-coumaryl, coniferyl and sinapyl alcohols are copolymerized to form mixed lignins. Several of these cell wall components show a determinative role in maize resistance to pest and diseases. However, defense mechanisms are very complex and vary among the same plant species, different tissues or even the same tissue at different developmental stages. Thus, it is important to highlight that the role of the cell wall components needs to be tested in diverse genotypes and specific tissues where the feeding or attacking by the pathogen takes place. Understanding the role of cell wall constituents as defense mechanisms may allow modifications of crops to withstand pests and diseases. PMID:23535334

  14. Streaking into middle school science: The Dell Streak pilot project

    NASA Astrophysics Data System (ADS)

    Austin, Susan Eudy

    A case study is conducted implementing the Dell Streak seven-inch android device into eighth grade science classes of one teacher in a rural middle school in the Piedmont region of North Carolina. The purpose of the study is to determine if the use of the Dell Streaks would increase student achievement on standardized subject testing, if the Streak could be used as an effective instructional tool, and if it could be considered an effective instructional resource for reviewing and preparing for the science assessments. A mixed method research design was used for the study to analyze both quantitative and qualitative results to determine if the Dell Streaks' utilization could achieve the following: 1. instructional strategies would change, 2. it would be an effective instructional tool, and 3. a comparison of the students' test scores and benchmark assessments' scores would provide statistically significant difference. Through the use of an ANOVA it was determined a statistically significant difference had occurred. A Post Hoc analysis was conducted to identify where the difference occurred. Finally a T-test determined was there was no statistically significance difference between the mean End-of-Grade tests and four quarterly benchmark scores of the control and the experimental groups. Qualitative research methods were used to gather results to determine if the Streaks were an effective instructional tool. Classroom observations identified that the teacher's teaching styles and new instructional strategies were implemented throughout the pilot project. Students had an opportunity to complete a questionnaire three times during the pilot project. Results revealed what the students liked about using the devices and the challenges they were facing. The teacher completed a reflective questionnaire throughout the pilot project and offered valuable reflections about the use of the devices in an educational setting. The reflection data supporting the case study was drawn

  15. The genetic basis of flecking and its relationship to disease resistance in the IBM maize mapping population

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Flecking is defined as a mild, often environmentally-dependent lesion phenotype observed on the leaves of several commonly used maize inbred lines. Anecdotal evidence suggests a link between flecking and enhanced broad-spectrum disease resistance. Neither the genetic basis underlying flecking nor ...

  16. Properties of martian slope streak populations

    NASA Astrophysics Data System (ADS)

    Bergonio, Justin R.; Rottas, Kimberly M.; Schorghofer, Norbert

    2013-07-01

    Slope streaks are down-slope mass movements on the surface of Mars that are among the few known examples of contemporary geologic activity on Mars. Here we study slope streak activity over three decades, based on overlapping images in the Lycus Sulci region taken by the Context Camera (CTX) 2007-2010 and the Viking Orbiter Camera in 1977. The number of disappeared slope streaks is nearly equal the number of newly formed slope streaks, suggesting the streak population is balanced. The turnover time of the population is estimated to be four decades. Slope streaks fade gradually over time, with islands of persistence. We also determine the number of observable slope streaks as a function of image resolution based on images by the High Resolution Imaging Science Experiment (HiRISE) camera, and find that the number of discernible slope streaks can increase rapidly with spatial resolution.

  17. Slope Streaks in Terra Sabaea

    NASA Technical Reports Server (NTRS)

    2007-01-01

    [figure removed for brevity, see original site] Figure 1 Click on image for larger version

    This HiRISE image shows the rim of a crater in the region of Terra Sabaea in the northern hemisphere of Mars.

    The subimage (figure 1) is a close-up view of the crater rim revealing dark and light-toned slope streaks. Slope streak formation is among the few known processes currently active on Mars. While their mechanism of formation and triggering is debated, they are most commonly believed to form by downslope movement of extremely dry sand or very fine-grained dust in an almost fluidlike manner (analogous to a terrestrial snow avalanche) exposing darker underlying material.

    Other ideas include the triggering of slope streak formation by possible concentrations of near-surface ice or scouring of the surface by running water from aquifers intercepting slope faces, spring discharge (perhaps brines), and/or hydrothermal activity.

    Several of the slope streaks in the subimage, particularly the three longest darker streaks, show evidence that downslope movement is being diverted around obstacles such as large boulders. Several streaks also appear to originate at boulders or clumps of rocky material.

    In general, the slope streaks do not have large deposits of displaced material at their downslope ends and do not run out onto the crater floor suggesting that they have little reserve kinetic energy. The darkest slope streaks are youngest and can be seen to cross cut and superpose older and lighter-toned streaks. The lighter-toned streaks are believed to be dark streaks that have lightened with time as new dust is deposited on their surface.

    Observation Geometry Image PSP_001808_1875 was taken by the High Resolution Imaging Science Experiment (HiRISE) camera onboard the Mars Reconnaissance Orbiter spacecraft on 15-Dec-2006. The complete image is centered at 7.4 degrees latitude, 47.0 degrees East longitude. The range to the target site was 272.1 km

  18. Suppression of maize root diseases caused by Macrophomina phaseolina, Fusarium moniliforme and Fusarium graminearum by plant growth promoting rhizobacteria.

    PubMed

    Pal, K K; Tilak, K V; Saxena, A K; Dey, R; Singh, C S

    2001-01-01

    A plant growth-promoting isolate of a fluorescent Pseudomonas sp. EM85 and two bacilli isolates MR-11(2) and MRF, isolated from maize rhizosphere, were found strongly antagonistic to Fusarium moniliforme, Fusarium graminearum and Macrophomina phaseolina, causal agents of foot rots and wilting, collar rots/stalk rots and root rots and wilting, and charcoal rots of maize, respectively. Pseudomonas sp. EM85 produced antifungal antibiotics (Afa+), siderophore (Sid+), HCN (HCN+) and fluorescent pigments (Flu+) besides exhibiting plant growth promoting traits like nitrogen fixation, phosphate solubilization, and production of organic acids and IAA. While MR-11(2) produced siderophore (Sid+), antibiotics (Afa+) and antifungal volatiles (Afv+), MRF exhibited the production of antifungal antibiotics (Afa+) and siderophores (Sid+). Bacillus spp. MRF was also found to produce organic acids and IAA, solubilized tri-calcium phosphate and fixed nitrogen from the atmosphere. All three isolates suppressed the diseases caused by Fusarium moniliforme, Fusarium graminearum and Macrophomina phaseolina in vitro. A Tn5:: lacZ induced isogenic mutant of the fluorescent Pseudomonas EM85, M23, along with the two bacilli were evaluated for in situ disease suppression of maize. Results indicated that combined application of the two bacilli significantly (P = 0.05) reduced the Macrophomina-induced charcoal rots of maize by 56.04%. Treatments with the MRF isolate of Bacillus spp. and Tn5:: lacZ mutant (M23) of fluorescent Pseudomonas sp. EM85 significantly reduced collar rots, root and foot rots, and wilting of maize caused by Fusarium moniliforme and F. graminearum (P = 0.05) compared to all other treatments. All these isolates were found very efficient in colonizing the rhizotic zones of maize after inoculation. Evaluation of the population dynamics of the fluorescent Pseudomonas sp. EM85 using the Tn5:: lacZ marker and of the Bacillus spp. MRF and MR-11(2) using an antibiotic resistance

  19. Gated SIT Vidicon Streak Tube

    NASA Astrophysics Data System (ADS)

    Dunbar, D. L.; Yates, G. J.; Black, J. P.

    1986-01-01

    A recently developed prototype streak tube designed to produce high gain and resolution by incorporating the streak and readout functions in one envelope thereby minimizing photon-to-charge transformations and eliminating external coupling losses is presented. The tube is based upon a grid-gated Silicon-Intensified-Target Vidicon (SITV) with integral Focus Projection Scan (FPS) TV readout. Demagnifying electron optics (m=0.63) in the image section map the 40-mm-diameter photocathode image unto a 25-mm-diameter silicon target where gains >= 103 are achieved with only 10 KV accelerating voltage. This is compared with much lower gains (~ 50) at much higher voltages (~ 30 KV) reported for streak tubes using phosphor screens. Because SIT technology is well established means for electron imaging in vacuum, such fundamental problems as "backside thinning" required for electron imaging unto CCDs do not exist. The high spatial resolution (~ 30 1p/mm), variable scan formats, and high speed electrostatic deflection (250 mm2 areas are routinely rastered with 256 scan lines in 1.6 ms) available from FPS readout add versatility not available in CCD devices. Theoretical gain and spatial resolution for this design (developed jointly by Los Alamos National Laboratory and General Electric Co.) are compared with similar calculations and measured data obtained for RCA 73435 streaks fiber optically coupled to (1) 25-mm-diameter SIT FPS vidicons and (2) 40-mm-diameter MCPTs (proximity-focused microchannel plate image intensifier tubes) fiber optically coupled to 18-mm-diameter Sb2S3 FPS vidicons. Sweep sensitivity, shutter ratio, and record lengths for nanosecond duration (20 to 200 ns) streak applications are discussed.

  20. Molecular Genetic Analysis and Evolution of Segment 7 in Rice Black-Streaked Dwarf Virus in China.

    PubMed

    Zhou, Yu; Weng, Jianfeng; Chen, Yanping; Wu, Jirong; Meng, Qingchang; Han, Xiaohua; Hao, Zhuanfang; Li, Mingshun; Yong, Hongjun; Zhang, Degui; Zhang, Shihuang; Li, Xinhai

    2015-01-01

    Rice black-streaked dwarf virus (RBSDV) causes maize rough dwarf disease or rice black-streaked dwarf disease and can lead to severe yield losses in maize and rice. To analyse RBSDV evolution, codon usage bias and genetic structure were investigated in 111 maize and rice RBSDV isolates from eight geographic locations in 2013 and 2014. The linear dsRNA S7 is A+U rich, with overall codon usage biased toward codons ending with A (A3s, S7-1: 32.64%, S7-2: 29.95%) or U (U3s, S7-1: 44.18%, S7-2: 46.06%). Effective number of codons (Nc) values of 45.63 in S7-1 (the first open reading frame of S7) and 39.96 in S7-2 (the second open reading frame of S7) indicate low degrees of RBSDV-S7 codon usage bias, likely driven by mutational bias regardless of year, host, or geographical origin. Twelve optimal codons were detected in S7. The nucleotide diversity (π) of S7 sequences in 2013 isolates (0.0307) was significantly higher than in 2014 isolates (0.0244, P = 0.0226). The nucleotide diversity (π) of S7 sequences in isolates from Jinan (0.0391) was higher than that from the other seven locations (P < 0.01). Only one S7 recombinant was detected in Baoding. RBSDV isolates could be phylogenetically classified into two groups according to S7 sequences, and further classified into two subgroups. S7-1 and S7-2 were under negative and purifying selection, with respective Ka/Ks ratios of 0.0179 and 0.0537. These RBSDV populations were expanding (P < 0.01) as indicated by negative values for Tajima's D, Fu and Li's D, and Fu and Li's F. Genetic differentiation was detected in six RBSDV subpopulations (P < 0.05). Absolute Fst (0.0790) and Nm (65.12) between 2013 and 2014, absolute Fst (0.1720) and Nm (38.49) between maize and rice, and absolute Fst values of 0.0085-0.3069 and Nm values of 0.56-29.61 among these eight geographic locations revealed frequent gene flow between subpopulations. Gene flow between 2013 and 2014 was the most frequent. PMID:26121638

  1. Molecular Genetic Analysis and Evolution of Segment 7 in Rice Black-Streaked Dwarf Virus in China.

    PubMed

    Zhou, Yu; Weng, Jianfeng; Chen, Yanping; Wu, Jirong; Meng, Qingchang; Han, Xiaohua; Hao, Zhuanfang; Li, Mingshun; Yong, Hongjun; Zhang, Degui; Zhang, Shihuang; Li, Xinhai

    2015-01-01

    Rice black-streaked dwarf virus (RBSDV) causes maize rough dwarf disease or rice black-streaked dwarf disease and can lead to severe yield losses in maize and rice. To analyse RBSDV evolution, codon usage bias and genetic structure were investigated in 111 maize and rice RBSDV isolates from eight geographic locations in 2013 and 2014. The linear dsRNA S7 is A+U rich, with overall codon usage biased toward codons ending with A (A3s, S7-1: 32.64%, S7-2: 29.95%) or U (U3s, S7-1: 44.18%, S7-2: 46.06%). Effective number of codons (Nc) values of 45.63 in S7-1 (the first open reading frame of S7) and 39.96 in S7-2 (the second open reading frame of S7) indicate low degrees of RBSDV-S7 codon usage bias, likely driven by mutational bias regardless of year, host, or geographical origin. Twelve optimal codons were detected in S7. The nucleotide diversity (π) of S7 sequences in 2013 isolates (0.0307) was significantly higher than in 2014 isolates (0.0244, P = 0.0226). The nucleotide diversity (π) of S7 sequences in isolates from Jinan (0.0391) was higher than that from the other seven locations (P < 0.01). Only one S7 recombinant was detected in Baoding. RBSDV isolates could be phylogenetically classified into two groups according to S7 sequences, and further classified into two subgroups. S7-1 and S7-2 were under negative and purifying selection, with respective Ka/Ks ratios of 0.0179 and 0.0537. These RBSDV populations were expanding (P < 0.01) as indicated by negative values for Tajima's D, Fu and Li's D, and Fu and Li's F. Genetic differentiation was detected in six RBSDV subpopulations (P < 0.05). Absolute Fst (0.0790) and Nm (65.12) between 2013 and 2014, absolute Fst (0.1720) and Nm (38.49) between maize and rice, and absolute Fst values of 0.0085-0.3069 and Nm values of 0.56-29.61 among these eight geographic locations revealed frequent gene flow between subpopulations. Gene flow between 2013 and 2014 was the most frequent.

  2. Molecular breeding for developing drought tolerant and disease resistant maize in sub Saharan Africa

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The International Maize and Wheat Improvement Center (CIMMYT), in collaboration with public and private partners, is working on developing and disseminating drought tolerant maize for sub Saharan Africa (SSA) using pedigree selection and molecular breeding. In this paper, we provide an overview of ...

  3. Priming maize resistance by its neighbors: activating 1,4-benzoxazine-3-ones synthesis and defense gene expression to alleviate leaf disease

    PubMed Central

    Ding, Xupo; Yang, Min; Huang, Huichuan; Chuan, Youcong; He, Xiahong; Li, Chengyun; Zhu, Youyong; Zhu, Shusheng

    2015-01-01

    Plant disease can be effectively suppressed in intercropping systems. Our previous study demonstrated that neighboring maize plants can restrict the spread of soil-borne pathogens of pepper plants by secreting defense compounds into the soil. However, whether maize plant can receive benefits from its neighboring pepper plants in an intercropping system is little attention. We examined the effects of maize roots treated with elicitors from the pepper pathogen Phytophthora capsici and pepper root exudates on the synthesis of 1,4-benzoxazine-3-ones (BXs), the expression of defense-related genes in maize, and their ability to alleviate the severity of southern corn leaf blight (SCLB) caused by Bipolaris maydis. We found that SCLB was significantly reduced after the above treatments. The contents of 1,4-benzoxazine-3-ones (BXs: DIBOA, DIMBOA, and MBOA) and the expression levels of BX synthesis and defense genes in maize roots and shoots were up-regulated. DIMBOA and MBOA effectively inhibited the mycelium growth of Bipolaris maydis at physiological concentrations in maize shoots. Further studies suggested that the defense related pathways or genes in maize roots and shoots were activated by elicitors from the P. capsici or pepper root exudates. In conclusion, maize increased the levels of BXs and defense gene expression both in roots and shoots after being triggered by root exudates and pathogen from neighboring pepper plants, eventually enhancing its resistance. PMID:26528303

  4. Root Interactions in a Maize/Soybean Intercropping System Control Soybean Soil-Borne Disease, Red Crown Rot

    PubMed Central

    Gao, Xiang; Wu, Man; Xu, Ruineng; Wang, Xiurong; Pan, Ruqian; Kim, Hye-Ji; Liao, Hong

    2014-01-01

    Background Within-field multiple crop species intercropping is well documented and used for disease control, but the underlying mechanisms are still unclear. As roots are the primary organ for perceiving signals in the soil from neighboring plants, root behavior may play an important role in soil-borne disease control. Principal Findings In two years of field experiments, maize/soybean intercropping suppressed the occurrence of soybean red crown rot, a severe soil-borne disease caused by Cylindrocladium parasiticum (C. parasiticum). The suppressive effects decreased with increasing distance between intercropped plants under both low P and high P supply, suggesting that root interactions play a significant role independent of nutrient status. Further detailed quantitative studies revealed that the diversity and intensity of root interactions altered the expression of important soybean PR genes, as well as, the activity of corresponding enzymes in both P treatments. Furthermore, 5 phenolic acids were detected in root exudates of maize/soybean intercropped plants. Among these phenolic acids, cinnamic acid was released in significantly greater concentrations when intercropped maize with soybean compared to either crop grown in monoculture, and this spike in cinnamic acid was found dramatically constrain C. parasiticum growth in vitro. Conclusions To the best of our knowledge, this study is the first report to demonstrate that intercropping with maize can promote resistance in soybean to red crown rot in a root-dependent manner. This supports the point that intercropping may be an efficient ecological strategy to control soil-borne plant disease and should be incorporated in sustainable agricultural management practices. PMID:24810161

  5. Unraveling Genomic Complexity at a Quantitative Disease Resistance Locus in Maize

    PubMed Central

    Jamann, Tiffany M.; Poland, Jesse A.; Kolkman, Judith M.; Smith, Laurie G.; Nelson, Rebecca J.

    2014-01-01

    Multiple disease resistance has important implications for plant fitness, given the selection pressure that many pathogens exert directly on natural plant populations and indirectly via crop improvement programs. Evidence of a locus conditioning resistance to multiple pathogens was found in bin 1.06 of the maize genome with the allele from inbred line “Tx303” conditioning quantitative resistance to northern leaf blight (NLB) and qualitative resistance to Stewart’s wilt. To dissect the genetic basis of resistance in this region and to refine candidate gene hypotheses, we mapped resistance to the two diseases. Both resistance phenotypes were localized to overlapping regions, with the Stewart’s wilt interval refined to a 95.9-kb segment containing three genes and the NLB interval to a 3.60-Mb segment containing 117 genes. Regions of the introgression showed little to no recombination, suggesting structural differences between the inbred lines Tx303 and “B73,” the parents of the fine-mapping population. We examined copy number variation across the region using next-generation sequencing data, and found large variation in read depth in Tx303 across the region relative to the reference genome of B73. In the fine-mapping region, association mapping for NLB implicated candidate genes, including a putative zinc finger and pan1. We tested mutant alleles and found that pan1 is a susceptibility gene for NLB and Stewart’s wilt. Our data strongly suggest that structural variation plays an important role in resistance conditioned by this region, and pan1, a gene conditioning susceptibility for NLB, may underlie the QTL. PMID:25009146

  6. Southern rice black-streaked dwarf virus: a white-backed planthopper-transmitted fijivirus threatening rice production in Asia.

    PubMed

    Zhou, Guohui; Xu, Donglin; Xu, Dagao; Zhang, Maoxin

    2013-09-09

    Southern rice black-streaked dwarf virus (SRBSDV), a non-enveloped icosahedral virus with a genome of 10 double-stranded RNA segments, is a novel species in the genus Fijivirus (family Reoviridae) first recognized in 2008. Rice plants infected with this virus exhibit symptoms similar to those caused by Rice black-streaked dwarf virus. Since 2009, the virus has rapidly spread and caused serious rice losses in East and Southeast Asia. Significant progress has been made in recent years in understanding this disease, especially about the functions of the viral genes, rice-virus-insect interactions, and epidemiology and control measures. The virus can be efficiently transmitted by the white-backed planthopper (WBPH, Sogatella furcifera) in a persistent circulative propagative manner but cannot be transmitted by the brown planthopper (Nilaparvata lugens) and small brown planthopper (Laodelphax striatellus). Rice, maize, Chinese sorghum (Coix lacryma-jobi) and other grass weeds can be infected via WBPH. However, only rice plays a major role in the virus infection cycle because of the vector's preference. In Southeast Asia, WBPH is a long-distance migratory rice pest. The disease cycle can be described as follows: SRBSDV and its WBPH vector overwinter in warm tropical or sub-tropical areas; viruliferous WBPH adults carry the virus from south to north via long-distance migration in early spring, transmit the virus to rice seedlings in the newly colonized areas, and lay eggs on the infected seedlings; the next generation of WBPHs propagate on infected seedlings, become viruliferous, disperse, and cause new disease outbreaks. Several molecular and serological methods have been developed to detect SRBSDV in plant tissues and individual insects. Control measures based on protection from WBPH, including seedbed coverage, chemical seed treatments, and chemical spraying of seedlings, have proven effective in China.

  7. Southern rice black-streaked dwarf virus: a white-backed planthopper-transmitted fijivirus threatening rice production in Asia.

    PubMed

    Zhou, Guohui; Xu, Donglin; Xu, Dagao; Zhang, Maoxin

    2013-01-01

    Southern rice black-streaked dwarf virus (SRBSDV), a non-enveloped icosahedral virus with a genome of 10 double-stranded RNA segments, is a novel species in the genus Fijivirus (family Reoviridae) first recognized in 2008. Rice plants infected with this virus exhibit symptoms similar to those caused by Rice black-streaked dwarf virus. Since 2009, the virus has rapidly spread and caused serious rice losses in East and Southeast Asia. Significant progress has been made in recent years in understanding this disease, especially about the functions of the viral genes, rice-virus-insect interactions, and epidemiology and control measures. The virus can be efficiently transmitted by the white-backed planthopper (WBPH, Sogatella furcifera) in a persistent circulative propagative manner but cannot be transmitted by the brown planthopper (Nilaparvata lugens) and small brown planthopper (Laodelphax striatellus). Rice, maize, Chinese sorghum (Coix lacryma-jobi) and other grass weeds can be infected via WBPH. However, only rice plays a major role in the virus infection cycle because of the vector's preference. In Southeast Asia, WBPH is a long-distance migratory rice pest. The disease cycle can be described as follows: SRBSDV and its WBPH vector overwinter in warm tropical or sub-tropical areas; viruliferous WBPH adults carry the virus from south to north via long-distance migration in early spring, transmit the virus to rice seedlings in the newly colonized areas, and lay eggs on the infected seedlings; the next generation of WBPHs propagate on infected seedlings, become viruliferous, disperse, and cause new disease outbreaks. Several molecular and serological methods have been developed to detect SRBSDV in plant tissues and individual insects. Control measures based on protection from WBPH, including seedbed coverage, chemical seed treatments, and chemical spraying of seedlings, have proven effective in China. PMID:24058362

  8. Earth and planetary aeolian streaks: A review

    NASA Astrophysics Data System (ADS)

    Cohen-Zada, Aviv Lee; Blumberg, Dan Gabriel; Maman, Shimrit

    2016-03-01

    Wind streaks are abundant aeolian features that have been observed on planetary surfaces by remote sensing means. They have been widely studied, particularly on Mars and Venus and to a much lesser extent on Earth. In imagery, these streaks appear as elongated features that are easily distinguishable from their surroundings. Geomorphologically, these streaks have, thus far, been interpreted as the presence or absence of small loose particles on the surface, deposited or eroded, respectively, by wind. However, the use of different (optical and radar) remote-sensing tools to study wind streaks has led to uncertain interpretations of these features and has hindered their geomorphological definition. Since wind streaks indicate the prevailing wind direction at the time of their formation, they may be used to map near-surface winds and to estimate atmospheric circulation patterns. The aim of this article is to review the main studies focusing on wind streaks and to present the most up-to-date knowledge on this topic. Moreover, a new perspective for wind streak research is suggested: As 'wind streak' is a collective term for a variety of aeolian features that when viewed from above appear as distinctive albedo surface patterns, we suggest that the term should not be used to refer to a geomorphological feature. Since the definition of wind streaks is constrained to remote sensing rather than to geomorphology and is affected by the inherent biases of remote sensing methods, we suggest that 'wind streaks' should be used as a collective term for aeolian surfaces that are discernable from above as bright and dark patterns due to alterations in the characteristics of the surface or to the presence of bedforms. To better understand the mechanisms, time-frames, climate compatibility of wind streaks and the influences of remote sensing on their appearance, we have compiled a new database containing more than 2,900 Earth wind streaks. A comprehensive study of these Earth wind

  9. Wind Streaks on Earth; Exploration and Interpretation

    NASA Astrophysics Data System (ADS)

    Cohen-Zada, Aviv Lee; Blumberg, Dan G.; Maman, Shimrit

    2015-04-01

    Wind streaks, one of the most common aeolian features on planetary surfaces, are observable on the surface of the planets Earth, Mars and Venus. Due to their reflectance properties, wind streaks are distinguishable from their surroundings, and they have thus been widely studied by remote sensing since the early 1970s, particularly on Mars. In imagery, these streaks are interpreted as the presence - or lack thereof - of small loose particles on the surface deposited or eroded by wind. The existence of wind streaks serves as evidence for past or present active aeolian processes. Therefore, wind streaks are thought to represent integrative climate processes. As opposed to the comprehensive and global studies of wind streaks on Mars and Venus, wind streaks on Earth are understudied and poorly investigated, both geomorphologically and by remote sensing. The aim of this study is, thus, to fill the knowledge gap about the wind streaks on Earth by: generating a global map of Earth wind streaks from modern high-resolution remotely sensed imagery; incorporating the streaks in a geographic information system (GIS); and overlaying the GIS layers with boundary layer wind data from general circulation models (GCMs) and data from the ECMWF Reanalysis Interim project. The study defines wind streaks (and thereby distinguishes them from other aeolian features) based not only on their appearance in imagery but more importantly on their surface appearance. This effort is complemented by a focused field investigation to study wind streaks on the ground and from a variety of remotely sensed images (both optical and radar). In this way, we provide a better definition of the physical and geomorphic characteristics of wind streaks and acquire a deeper knowledge of terrestrial wind streaks as a means to better understand global and planetary climate and climate change. In a preliminary study, we detected and mapped over 2,900 wind streaks in the desert regions of Earth distributed in

  10. Orbital objects detection algorithm using faint streaks

    NASA Astrophysics Data System (ADS)

    Tagawa, Makoto; Yanagisawa, Toshifumi; Kurosaki, Hirohisa; Oda, Hiroshi; Hanada, Toshiya

    2016-02-01

    This study proposes an algorithm to detect orbital objects that are small or moving at high apparent velocities from optical images by utilizing their faint streaks. In the conventional object-detection algorithm, a high signal-to-noise-ratio (e.g., 3 or more) is required, whereas in our proposed algorithm, the signals are summed along the streak direction to improve object-detection sensitivity. Lower signal-to-noise ratio objects were detected by applying the algorithm to a time series of images. The algorithm comprises the following steps: (1) image skewing, (2) image compression along the vertical axis, (3) detection and determination of streak position, (4) searching for object candidates using the time-series streak-position data, and (5) selecting the candidate with the best linearity and reliability. Our algorithm's ability to detect streaks with signals weaker than the background noise was confirmed using images from the Australia Remote Observatory.

  11. Complete Genomic Sequence of Maize Rough Dwarf Virus, a Fijivirus Transmitted by the Small Brown Planthopper.

    PubMed

    Lv, Mingfang; Xie, Li; Yang, Jian; Chen, Jianping; Zhang, Heng-Mu

    2016-02-04

    The nucleotide sequences of the 10 genomic segments of an Italian isolate of maize rough dwarf virus (MRDV) were determined. This first complete genomic sequence of MRDV will help understand the phylogenetic relationships among group 2 fijiviruses and especially the closely related rice black-streaked dwarf virus, which is also found to naturally infect maize.

  12. Complete Genomic Sequence of Maize Rough Dwarf Virus, a Fijivirus Transmitted by the Small Brown Planthopper

    PubMed Central

    Lv, Mingfang; Xie, Li; Yang, Jian

    2016-01-01

    The nucleotide sequences of the 10 genomic segments of an Italian isolate of maize rough dwarf virus (MRDV) were determined. This first complete genomic sequence of MRDV will help understand the phylogenetic relationships among group 2 fijiviruses and especially the closely related rice black-streaked dwarf virus, which is also found to naturally infect maize. PMID:26847903

  13. Complete Genomic Sequence of Maize Rough Dwarf Virus, a Fijivirus Transmitted by the Small Brown Planthopper.

    PubMed

    Lv, Mingfang; Xie, Li; Yang, Jian; Chen, Jianping; Zhang, Heng-Mu

    2016-01-01

    The nucleotide sequences of the 10 genomic segments of an Italian isolate of maize rough dwarf virus (MRDV) were determined. This first complete genomic sequence of MRDV will help understand the phylogenetic relationships among group 2 fijiviruses and especially the closely related rice black-streaked dwarf virus, which is also found to naturally infect maize. PMID:26847903

  14. Topographic measurements of slope streaks on Mars

    NASA Astrophysics Data System (ADS)

    Brusnikin, Eugene S.; Kreslavsky, Mikhail A.; Zubarev, Anatoly E.; Patratiy, Vyacheslav D.; Krasilnikov, Sergey S.; Head, James W.; Karachevtseva, Irina P.

    2016-11-01

    Slope streaks are enigmatic, actively forming albedo features occurring on slopes in high-albedo, low-thermal-inertia, dust-rich equatorial regions on Mars. They are a specifically martian phenomenon with no direct analogs on the Earth. Their morphology suggests that the streaks are initiated at their upslope tips and propagate down to their termini; however, the physical mechanism of their formation is uncertain. We performed a large series of measurements of slopes associated with slope streaks using stereo pairs of high-resolution orbital images obtained by HiRISE camera and generated several digital elevation models for selected streaks. We found that: (1) slopes at the upslope streak tips range widely, however, there is a strong indication that streaks can be initiated only on slopes steeper than ∼20°; (2) slopes of the streak termini show an even wider range, with some streaks terminating at slopes as steep as their tips, while others propagate all the way down to horizontal surfaces; (3) the streaks can propagate stably for long (many hundreds of meters) distances and can turn, following the topographic gradient on ∼10°-15° slopes; (4) no uphill propagation of streaks is detected over baselines of tens of meters; (5) the slope streaks often propagate over 1-2 m high obstacles and can climb 1-2 m uphill over short (meters) distances. We used these findings to assess the viability of two classes of hypotheses about slope streak formation mechanisms proposed earlier: 1) "dry", some kind of run-away avalanche-like dry granular flow, and 2) "wet", some kind of run-away propagation of a front of percolating brines in the shallow subsurface. No specific observation unambiguously proves or rejects either of the two mechanisms. Several of our findings are readily explained by the "dry" mechanism and cannot be easily explained with any kind of "wet" mechanism, while other findings are closely consistent with the "wet" mechanism and are difficult to reconcile

  15. Electro-optic Phase Grating Streak Spectrometer

    SciTech Connect

    Goldin, F. J.

    2012-08-02

    The electro-optic phase grating streak spectrometer (EOPGSS) generates a time-resolved spectra equivalent to that obtained with a conventional spectrometer/streak camera combination, but without using a streak camera (by far the more expensive and problematic component of the conventional system). The EOPGSS is based on a phase, rather than an amplitude grating. Further, this grating is fabricated of electro-optic material such as, for example, KD*P, by either etching grooves into an E-O slab, or by depositing lines of the E-O material onto an optical flat. An electric field normal to the grating alters the material’s index of refraction and thus affects a shift (in angle) of the output spectrum. Ramping the voltage streaks the spectrum correspondingly. The streak and dispersion directions are the same, so a second (static, conventional) grating disperses the spectrum in the orthogonal direction to prevent different wavelengths from “overwriting” each other. Because the streaking is done by the grating, the streaked output spectrum is recorded with a time-integrating device, such as a CCD. System model, typical design, and performance expectations will be presented.

  16. Overexpression of rice black-streaked dwarf virus p7-1 in Arabidopsis results in male sterility due to non-dehiscent anthers.

    PubMed

    Sun, Feng; Yuan, Xia; Xu, Qiufang; Zhou, Tong; Fan, Yongjian; Zhou, Yijun

    2013-01-01

    Rice black-streaked dwarf virus (RBSDV), a member of the genus Fijivirus in the family Reoviridae, is propagatively transmitted by the small brown planthopper (Laodelphax striatellus Fallén). RBSDV causes rice black-streaked dwarf and maize rough dwarf diseases, which lead to severe yield losses in crops in China. Although several RBSDV proteins have been studied in detail, the functions of the nonstructural protein P7-1 are still largely unknown. To investigate the role of the P7-1 protein in virus pathogenicity, transgenic Arabidopsis thaliana plants were generated in which the P7-1 gene was expressed under the control of the 35S promoter. The RBSDV P7-1-transgenic Arabidopsis plants (named P7-1-OE) were male sterility. Flowers and pollen from P7-1-transgenic plants were of normal size and shape, and anthers developed to the normal size but failed to dehisce. The non-dehiscent anthers observed in P7-1-OE were attributed to decreased lignin content in the anthers. Furthermore, the reactive oxygen species levels were quite low in the transgenic plants compared with the wild type. These results indicate that ectopic expression of the RBSDV P7-1 protein in A. thaliana causes male sterility, possibly through the disruption of the lignin biosynthesis and H2O2-dependent polymerization pathways.

  17. Overexpression of rice black-streaked dwarf virus p7-1 in Arabidopsis results in male sterility due to non-dehiscent anthers.

    PubMed

    Sun, Feng; Yuan, Xia; Xu, Qiufang; Zhou, Tong; Fan, Yongjian; Zhou, Yijun

    2013-01-01

    Rice black-streaked dwarf virus (RBSDV), a member of the genus Fijivirus in the family Reoviridae, is propagatively transmitted by the small brown planthopper (Laodelphax striatellus Fallén). RBSDV causes rice black-streaked dwarf and maize rough dwarf diseases, which lead to severe yield losses in crops in China. Although several RBSDV proteins have been studied in detail, the functions of the nonstructural protein P7-1 are still largely unknown. To investigate the role of the P7-1 protein in virus pathogenicity, transgenic Arabidopsis thaliana plants were generated in which the P7-1 gene was expressed under the control of the 35S promoter. The RBSDV P7-1-transgenic Arabidopsis plants (named P7-1-OE) were male sterility. Flowers and pollen from P7-1-transgenic plants were of normal size and shape, and anthers developed to the normal size but failed to dehisce. The non-dehiscent anthers observed in P7-1-OE were attributed to decreased lignin content in the anthers. Furthermore, the reactive oxygen species levels were quite low in the transgenic plants compared with the wild type. These results indicate that ectopic expression of the RBSDV P7-1 protein in A. thaliana causes male sterility, possibly through the disruption of the lignin biosynthesis and H2O2-dependent polymerization pathways. PMID:24260239

  18. Banana streak virus is very diverse in Uganda.

    PubMed

    Harper, Glyn; Hart, Darren; Moult, Sarah; Hull, Roger

    2004-03-01

    Banana streak virus (BSV) is a badnavirus that causes a viral leaf streak disease of banana and plantain (Musa spp.). Identified in essentially all Musa growing areas of the world, it has a deleterious effect on the productivity of infected plants as well as being a major constraint to Musa breeding programmes and germplasm dissemination. Banana is a staple food in Uganda which is, per capita, one of the worlds largest banana producers and consumers. BSV was isolated from infected plants sampled across the Ugandan Musa growing area and the isolates were analysed using molecular and serological techniques. These analyses showed that BSV is very highly variable in Uganda. They suggest that the variability is, in part, due to a series of introductions of banana into Uganda, each with a different complement of infecting viruses.

  19. Streak Tubes for Diagnostics of Lasers and Plasmas

    NASA Astrophysics Data System (ADS)

    Sokolov, A. Yu; Konovalov, P. I.; Nurtdinov, R. I.; Vikulin, M. P.; Pryanishnikov, I. G.; Dolotov, A. S.; Krapiva, P. S.

    2016-09-01

    Designing a facility for laser fusion research requires sufficient advancement in diagnostics techniques for lasers and plasmas, including those involving streak camera imaging. Maximum specifications of streak cameras depend on the parameters of streak tubes. The paper illustrates how these devices function, and which of their parameters are limiting. The paper presents a novel technological platform designed at VNIIA, which was used to develop a new generation of streak tubes. Using these streak tubes in streak cameras, the efficiency of streak camera imaging techniques can be improved by several orders of magnitude, and new techniques can be designed.

  20. A solid state streak camera

    NASA Astrophysics Data System (ADS)

    Kleinfelder, Stuart; Kwiatkowski, Kris; Shah, Ashish

    2005-03-01

    A monolithic solid-state streak camera has been designed and fabricated in a standard 0.35 μm, 3.3V, thin-oxide digital CMOS process. It consists of a 1-D linear array of 150 integrated photodiodes, followed by fast analog buffers and on-chip, 150-deep analog frame storage. Each pixel's front-end consists of an n-diffusion / p-well photodiode, with fast complementary reset transistors, and a source-follower buffer. Each buffer drives a line of 150 sample circuits per pixel, with each sample circuit consisting of an n-channel sample switch, a 0.1 pF double-polysilicon sample capacitor, a reset switch to definitively clear the capacitor, and a multiplexed source-follower readout buffer. Fast on-chip sample clock generation was designed using a self-timed break-before-make operation that insures the maximum time for sample settling. The electrical analog bandwidth of each channels buffer and sampling circuits was designed to exceed 1 GHz. Sampling speeds of 400 M-frames/s have been achieved using electrical input signals. Operation with optical input signals has been demonstrated at 100 MHz sample rates. Sample output multiplexing allows the readout of all 22,500 samples (150 pixels times 150 samples per pixel) in about 3 ms. The chip"s output range was a maximum of 1.48 V on a 3.3V supply voltage, corresponding to a maximum 2.55 V swing at the photodiode. Time-varying output noise was measured to be 0.51 mV, rms, at 100 MHz, for a dynamic range of ~11.5 bits, rms. Circuit design details are presented, along with the results of electrical measurements and optical experiments with fast pulsed laser light sources at several wavelengths.

  1. Immunofluorescence localization and ultrastructure of Stewart’s wilt disease bacterium Pantoea stewartii in maize leaves and in its flea beetle vector Chaetocnema pulicaria (Coleoptera: Chrysomelidae)

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Pantoea stewartii is the causal agent of Stewart's wilt of sweet corn, the most serious bacterial disease of sweet corn and maize in the North-Central and Eastern USA. P. stewartii is transmitted mainly by the corn flea beetle Chaetocnema pulicaria (Coleoptera: Chrysomelidae) and this bacterium is a...

  2. Maize databases

    Technology Transfer Automated Retrieval System (TEKTRAN)

    This chapter is a succinct overview of maize data held in the species-specific database MaizeGDB (the Maize Genomics and Genetics Database), and selected multi-species data repositories, such as Gramene/Ensembl Plants, Phytozome, UniProt and the National Center for Biotechnology Information (NCBI), ...

  3. Analyses of Twelve New Whole Genome Sequences of Cassava Brown Streak Viruses and Ugandan Cassava Brown Streak Viruses from East Africa: Diversity, Supercomputing and Evidence for Further Speciation

    PubMed Central

    Ndunguru, Joseph; Sseruwagi, Peter; Tairo, Fred; Stomeo, Francesca; Maina, Solomon; Djinkeng, Appolinaire; Kehoe, Monica; Boykin, Laura M.

    2015-01-01

    Cassava brown streak disease is caused by two devastating viruses, Cassava brown streak virus (CBSV) and Ugandan cassava brown streak virus (UCBSV) which are frequently found infecting cassava, one of sub-Saharan Africa’s most important staple food crops. Each year these viruses cause losses of up to $100 million USD and can leave entire families without their primary food source, for an entire year. Twelve new whole genomes, including seven of CBSV and five of UCBSV were uncovered in this research, doubling the genomic sequences available in the public domain for these viruses. These new sequences disprove the assumption that the viruses are limited by agro-ecological zones, show that current diagnostic primers are insufficient to provide confident diagnosis of these viruses and give rise to the possibility that there may be as many as four distinct species of virus. Utilizing NGS sequencing technologies and proper phylogenetic practices will rapidly increase the solution to sustainable cassava production. PMID:26439260

  4. Frost streaks in the south polar cap of Mars

    NASA Technical Reports Server (NTRS)

    Thomas, P.; Veverka, J.; Campos-Marquetti, R.

    1979-01-01

    Viking Orbiter images of the annual south polar cap on Mars exhibit elongated bright features that are associated with craters and resemble wind streaks observed elsewhere on Mars. The study focuses on the well-documented frost streaks. The discussion covers the morphology of frost streaks, occurrence, seasonal behavior, thickness of frost in streak deposits, wind patterns inferred from frost streaks and other eolian features in the south polar region, formation of frost streaks, and other locales of preferential frost accumulation. The form and seasonal behavior of the bright elongated albedo markings which extend from the rims of many craters in the south polar cap suggest that they are accumulations of CO2 frost in the lee of craters. The frost streaks appear in the fall, increasing in length but not changing in direction during fall and winter. The frost streaks indicate a prograde circulation pattern of near-surface winds around the pole. Other details are also presented.

  5. Characterization of Brown Streak Virus-Resistant Cassava.

    PubMed

    Anjanappa, Ravi B; Mehta, Devang; Maruthi, M N; Kanju, Edward; Gruissem, Wilhelm; Vanderschuren, Hervé

    2016-07-01

    Cassava brown streak disease (CBSD) has become a major constraint to cassava production in East and Central Africa. The identification of new sources of CBSD resistance is essential to deploy CBSD mitigation strategies, as the disease is progressing westwards to new geographical areas. A stringent infection method based on top cleft-grafting combined with precise virus titer quantitation was utilized to screen 14 cassava cultivars and elite breeding lines. When inoculated with mixed infections of Cassava brown streak virus (CBSV) and Ugandan cassava brown streak virus (UCBSV), the scions of elite breeding lines KBH 2006/18 and KBH 2006/26 remained symptom-free during a 16-week period of virus graft inoculation, while susceptible varieties displayed typical CBSD infection symptoms at 4 weeks after grafting. The identified CBSD resistance was stable under the coinoculation of CBSV and UCBSV with cassava geminiviruses. Double-grafting experiments revealed that transmission of CBSV and UCBSV to CBSD-susceptible top scions was delayed when using intermediate scions of elite breeding lines KBH 2006/18 and KBH 2006/26. Nonetheless, comparison of virus systemic movement using scions from KBH2006/18 and a transgenic CBSD resistant 60444 line (60444-Hp9 line) showed that both CBSV and UCBSV move at undetectable levels through the stems. Further, protoplast-based assays of virus titers showed that the replication of CBSV is inhibited in the resistant line KBH2006/18, suggesting that the identified CBSD resistance is at least partially based on inhibition of virus replication. Our molecular characterization of CBSD resistance in cassava offers a robust virus-host system to further investigate the molecular determinants of CBSD resistance. PMID:27070326

  6. Characterization of Brown Streak Virus-Resistant Cassava.

    PubMed

    Anjanappa, Ravi B; Mehta, Devang; Maruthi, M N; Kanju, Edward; Gruissem, Wilhelm; Vanderschuren, Hervé

    2016-07-01

    Cassava brown streak disease (CBSD) has become a major constraint to cassava production in East and Central Africa. The identification of new sources of CBSD resistance is essential to deploy CBSD mitigation strategies, as the disease is progressing westwards to new geographical areas. A stringent infection method based on top cleft-grafting combined with precise virus titer quantitation was utilized to screen 14 cassava cultivars and elite breeding lines. When inoculated with mixed infections of Cassava brown streak virus (CBSV) and Ugandan cassava brown streak virus (UCBSV), the scions of elite breeding lines KBH 2006/18 and KBH 2006/26 remained symptom-free during a 16-week period of virus graft inoculation, while susceptible varieties displayed typical CBSD infection symptoms at 4 weeks after grafting. The identified CBSD resistance was stable under the coinoculation of CBSV and UCBSV with cassava geminiviruses. Double-grafting experiments revealed that transmission of CBSV and UCBSV to CBSD-susceptible top scions was delayed when using intermediate scions of elite breeding lines KBH 2006/18 and KBH 2006/26. Nonetheless, comparison of virus systemic movement using scions from KBH2006/18 and a transgenic CBSD resistant 60444 line (60444-Hp9 line) showed that both CBSV and UCBSV move at undetectable levels through the stems. Further, protoplast-based assays of virus titers showed that the replication of CBSV is inhibited in the resistant line KBH2006/18, suggesting that the identified CBSD resistance is at least partially based on inhibition of virus replication. Our molecular characterization of CBSD resistance in cassava offers a robust virus-host system to further investigate the molecular determinants of CBSD resistance.

  7. ASTRiDE: Automated Streak Detection for Astronomical Images

    NASA Astrophysics Data System (ADS)

    Kim, Dae-Won

    2016-05-01

    ASTRiDE detects streaks in astronomical images using a "border" of each object (i.e. "boundary-tracing" or "contour-tracing") and their morphological parameters. Fast moving objects such as meteors, satellites, near-Earth objects (NEOs), or even cosmic rays can leave streak-like traces in the images; ASTRiDE can detect not only long streaks but also relatively short or curved streaks.

  8. The first satellite laser echoes recorded on the streak camera

    NASA Technical Reports Server (NTRS)

    Hamal, Karel; Prochazka, Ivan; Kirchner, Georg; Koidl, F.

    1993-01-01

    The application of the streak camera with the circular sweep for the satellite laser ranging is described. The Modular Streak Camera system employing the circular sweep option was integrated into the conventional Satellite Laser System. The experimental satellite tracking and ranging has been performed. The first satellite laser echo streak camera records are presented.

  9. Perception of Randomness: On the Time of Streaks

    ERIC Educational Resources Information Center

    Sun, Yanlong; Wang, Hongbin

    2010-01-01

    People tend to think that streaks in random sequential events are rare and remarkable. When they actually encounter streaks, they tend to consider the underlying process as non-random. The present paper examines the time of pattern occurrences in sequences of Bernoulli trials, and shows that among all patterns of the same length, a streak is the…

  10. Bichromatic particle streak velocimetry bPSV

    NASA Astrophysics Data System (ADS)

    Voss, Björn; Stapf, Julian; Berthe, André; Garbe, Christoph S.

    2012-11-01

    We propose a novel technique for three-dimensional three-component (3D3C) interfacial flow measurement. It is based on the particle streak velocimetry principle. A relatively long integration time of the camera is used for capturing the movement of tracer particles as streaks on the sensor. The velocity along these streaks is extracted by periodically changing the illumination using a known pattern. A dye with different absorption characteristics in two distinct wavelengths is used to color the fluid. The depth of particles relative to the fluid interface can then be computed from their intensities when illuminated with light sources at those two different wavelengths. Hence, from our approach, a bichromatic, periodical illumination together with an image processing routine for precisely extracting particle streak features is used for measuring 3D3C fluid flow with a single camera. The technique is applied to measuring turbulent Rayleigh-Bénard convection at the free air--water interface. Using Lagrangian statistics, we are able to demonstrate a clear transition from the Batchelor regime to the Richardson regime, both of which were postulated for isotropic turbulence. The relative error of the velocity extraction of our new technique was found to be below 0.5 %.

  11. Streaks Of Colored Water Indicate Surface Airflows

    NASA Technical Reports Server (NTRS)

    Wilcox, Floyd J., Jr.

    1994-01-01

    Response faster and contamination less than in oil-flow technique. Flowing colored water provides accurate and clean way to reveal flows of air on surfaces of models in wind tunnels. Colored water flows from small orifices in model, forming streak lines under influence of air streaming over surface of model.

  12. Dark Streaks Over-riding Inactive Dunes

    NASA Technical Reports Server (NTRS)

    2000-01-01

    Not all sand dunes on Mars are active in the modern martian environment. This example from the Lycus Sulci (Olympus Mons'aureole') region shows a case where small windblown dunes at the base of a slope have been over-ridden by more recent dark streaks (arrows). The dark streaks are most likely caused by what geologists call mass wasting or mass movement (landslides and avalanches are mass movements). Dark slope streaks such as these are common in dustier regions of Mars, and they appear to result from movement of extremely dry dust or sand in an almost fluidlike manner down a slope. This movement disrupts the bright dust coating on the surface and thus appears darker than the surrounding terrain.

    In this case, the dark slope streaks have moved up and over the dunes at the bottom of the slope, indicating that the process that moves sediment down the slope is more active (that is, it has occurred more recently and hence is more likely to occur) in the modern environment than is the movement of dunes and ripples at this location on Mars. The dunes, in fact, are probably mantled by dust. This October 1997 Mars Global Surveyor (MGS) Mars Orbiter Camera (MOC) picture is illuminated from the left and located near 31.6oN, 134.0oW.

  13. Enhanced Virus Resistance in Transgenic Maize Expressing a dsRNA-Specific Endoribonuclease Gene from E. coli

    PubMed Central

    Liu, He; Tian, Lanzhi; Zhang, Aihong; Zhang, Yanjing; Shi, Lindan; Guo, Bihong; Xu, Jin; Duan, Xifei; Wang, Xianbing; Han, Chenggui; Miao, Hongqin; Yu, Jialin; Li, Dawei

    2013-01-01

    Maize rough dwarf disease (MRDD), caused by several Fijiviruses in the family Reoviridae, is a global disease that is responsible for substantial yield losses in maize. Although some maize germplasm have low levels of polygenic resistance to MRDD, highly resistant cultivated varieties are not available for agronomic field production in China. In this work, we have generated transgenic maize lines that constitutively express rnc70, a mutant E. coli dsRNA-specific endoribonuclease gene. Transgenic lines were propagated and screened under field conditions for 12 generations. During three years of evaluations, two transgenic lines and their progeny were challenged with Rice black-streaked dwarf virus (RBSDV), the causal agent of MRDD in China, and these plants exhibited reduced levels of disease severity. In two normal years of MRDD abundance, both lines were more resistant than non-transgenic plants. Even in the most serious MRDD year, six out of seven progeny from one line were resistant, whereas non-transgenic plants were highly susceptible. Molecular approaches in the T12 generation revealed that the rnc70 transgene was integrated and expressed stably in transgenic lines. Under artificial conditions permitting heavy virus inoculation, the T12 progeny of two highly resistant lines had a reduced incidence of MRDD and accumulation of RBSDV in infected plants. In addition, we confirmed that the RNC70 protein could bind directly to RBSDV dsRNA in vitro. Overall, our data show that RNC70-mediated resistance in transgenic maize can provide efficient protection against dsRNA virus infection. PMID:23593318

  14. Wind Streaks on Venus: Clues to Atmospheric Circulation

    NASA Technical Reports Server (NTRS)

    Greeley, Ronald; Schubert, Gerald; Limonadi, Daniel; Bender, Kelly C.; Newman, William I.; Thomas, Peggy E.; Weitz, Catherine M.; Wall, Stephen D.

    1994-01-01

    Magellan images reveal surface features on Venus attributed to wind processes. Sand dunes, wind-sculpted hills, and more than 5830 wind streaks have been identified. The streaks serve as local "wind vanes," representing wind direction at the time of streak formation and allowing the first global mapping of near-surface wind patterns on Venus. Wind streaks are oriented both toward the equator and toward the west. When streaks associated with local transient events, such as impact cratering, are deleted, the westward component is mostly lost but the equatorward component remains. This pattern is consistent with a Hadley circulation of the lower atmosphere.

  15. Evaluation of banana hybrids for tolerance to black leaf streak (Mycosphaerella fijiensis Morelet) in Puerto Rico

    Technology Transfer Automated Retrieval System (TEKTRAN)

    In Puerto Rico, bananas (including plantains) are important agricultural commodities; their combined production totaled 133,500 tons in 2008. Black leaf streak (BLS) and Sigatoka leaf spot diseases, caused by Mycosphaerella fijiensis and M. musicola, respectively, are responsible for significant los...

  16. Purification and some properties of reovirus-like particles from leafhoppers and their possible involvement in wallaby ear disease of maize.

    PubMed

    Boccardo, G; Hatta, T; Francki, R I; Grivell, C J

    1980-01-30

    Reovirus-like particles, occurring in association with viroplasms, crystalline arrays and tubules, in the cytoplasm of Cicadulina bimaculata capable of inducing wallaby ear disease in maize, were purified from the insects by differential centrifugation, treatment with the nonionic detergent, Nonidet P-40, and sucrose density gradient centrifugation. The purified particles have a double-shelled icosahedral structure about 70 nm in diameter with external projections (A spikes) about 10 nm long located at the 12 vertices. These intact particles (IPs) are morphologically similar to those of Fiji disease virus (FDV), but are more stable. Cores were produced by enzymatic digestion of IPs with alpha-chymotrypsin. The cores are icosahedra about 57 nm in diameter with projections (B spikes) located at the 12 vertices, resembling those of FDV and cytoplasmic polyhedrosis virus. Immunization of a rabbit with purified IPs resulted in the production of antibodies specific to IPs, cores, and dsRNA. Immunoelectron microscopic investigations revealed that there is no relationship between this virus and FDV, maize rough dwarf, oat sterile dwarf, pangola stunt, and rice ragged stunt viruses, all members of the genus Fijivirus in the family Reoviridae. The nucleic acid extracted from partially purified virus was resolved into 10 segments by polyacrylamide gel electrophoresis. Reovirus-like particles or viroplasms could not be detected in thin sections of maize seedlings colonized by C. bimaculata showing wallaby ear symptoms. In the light of these data the possible etiology of wallaby ear disease is discussed. PMID:18631635

  17. Photonic streaking of attosecond pulse trains

    NASA Astrophysics Data System (ADS)

    Kim, Kyung Taec; Zhang, Chunmei; Ruchon, Thierry; Hergott, Jean-François; Auguste, Thierry; Villeneuve, D. M.; Corkum, P. B.; Quéré, F.

    2013-08-01

    High harmonic radiation, produced when intense laser pulses interact with matter, is composed of a train of attosecond pulses. Individual pulses in this train carry information on ultrafast dynamics that vary from one half-optical-cycle to the next. Here, we demonstrate an all-optical photonic streaking measurement that provides direct experimental access to each attosecond pulse by mapping emission time onto propagation angle. This is achieved by inducing an ultrafast rotation of the instantaneous laser wavefront at the focus. We thus time-resolve attosecond pulse train generation, and hence the dynamics in the nonlinear medium itself. We apply photonic streaking to harmonic generation in gases and directly observe, for the first time, the influence of non-adiabatic electron dynamics and plasma formation on the generated attosecond pulse train. These experimental and numerical results also provide the first evidence of the generation of attosecond lighthouses in gases, which constitute ideal sources for attosecond pump-probe spectroscopy.

  18. Understanding baseball team standings and streaks

    NASA Astrophysics Data System (ADS)

    Sire, C.; Redner, S.

    2009-02-01

    Can one understand the statistics of wins and losses of baseball teams? Are their consecutive-game winning and losing streaks self-reinforcing or can they be described statistically? We apply the Bradley-Terry model, which incorporates the heterogeneity of team strengths in a minimalist way, to answer these questions. Excellent agreement is found between the predictions of the Bradley-Terry model and the rank dependence of the average number team wins and losses in major-league baseball over the past century when the distribution of team strengths is taken to be uniformly distributed over a finite range. Using this uniform strength distribution, we also find very good agreement between model predictions and the observed distribution of consecutive-game team winning and losing streaks over the last half-century; however, the agreement is less good for the previous half-century. The behavior of the last half-century supports the hypothesis that long streaks are primarily statistical in origin with little self-reinforcing component. The data further show that the past half-century of baseball has been more competitive than the preceding half-century.

  19. Particle Streak Velocimetry of Supersonic Nozzle Flows

    NASA Technical Reports Server (NTRS)

    Willits, J. D.; Pourpoint, T. L.

    2016-01-01

    A novel velocimetry technique to probe the exhaust flow of a laboratory scale combustor is being developed. The technique combines the advantages of standard particle velocimetry techniques and the ultra-fast imaging capabilities of a streak camera to probe high speed flows near continuously with improved spatial and velocity resolution. This "Particle Streak Velocimetry" technique tracks laser illuminated seed particles at up to 236 picosecond temporal resolution allowing time-resolved measurement of one-dimensional flows exceeding 2000 m/s as are found in rocket nozzles and many other applications. Developmental tests with cold nitrogen have been performed to validate and troubleshoot the technique with supersonic flows of much lower velocity and without background noise due to combusting flow. Flow velocities on the order of 500 m/s have been probed with titanium dioxide particles and a continuous-wave laser diode. Single frame images containing multiple streaks are analyzed to find the average slope of all incident particles corresponding to the centerline axial flow velocity. Long term objectives for these tests are correlation of specific impulse to theoretical combustion predictions and direct comparisons between candidate green fuels and the industry standard, monomethylhydrazine, each tested under identical conditions.

  20. First report of bacterial streak of fennel (Foeniculum vulgare) in California caused by Pseudomonas syringae pv. apii

    Technology Transfer Automated Retrieval System (TEKTRAN)

    A new bacterial streak disease appeared on fennel leaves, stems and bulbs grown in Salinas California production fields. Initial symptoms consisted of small black lesions on stems that spread down the stem to the bulbs and up the stem to leaves as the disease progressed. The disease rendered the pl...

  1. Association of a specific cationic peroxidase isozyme with maize stress and disease resistance responses, genetic identification, and identification of a cDNA coding for the isozyme.

    PubMed

    Dowd, Patrick F; Johnson, Eric T

    2005-06-01

    The presence of a pI 9.0 cationic peroxidase isozyme from milk stage pericarp of six susceptible and five resistant inbreds was correlated significantly with previously reported field data on percentage infection by Aspergillus flavus in the inbreds and their hybrids. The isozyme was constitutively expressed in some additional maize tissues and lines examined, and frequently induced by mechanical damage, heat shock, Fusarium proliferatum, and/or Bacillus subtilis in other lines tested. Native/IEF two-dimensional electrophoresis identified the isozyme as the previously genetically identified px5. A cDNA clone expressed in black Mexican sweet (BMS) maize cell cultures produced the pI 9.0 isozyme. In addition to potential use in marker-assisted breeding, enhanced expression of this cationic peroxidase through breeding or genetic engineering may lead to enhanced disease or insect resistance.

  2. Maize lethal necrosis (MLN), an emerging threat to maize-based food security in sub-Saharan Africa

    Technology Transfer Automated Retrieval System (TEKTRAN)

    In sub-Saharan Africa, maize is a staple food and key determinant of food security for smallholder farming communities. Pest and disease outbreaks are key constraints to maize productivity. In September 2011, a serious disease outbreak, later diagnosed as maize lethal necrosis (MLN), was reported on...

  3. Effect of Maize Hybrid and Foliar Fungicides on Yield Under Low Foliar Disease Severity Conditions.

    PubMed

    Mallowa, Sally O; Esker, Paul D; Paul, Pierce A; Bradley, Carl A; Chapara, Venkata R; Conley, Shawn P; Robertson, Alison E

    2015-08-01

    Foliar fungicide use in the U.S. Corn Belt increased in the last decade; however, questions persist pertaining to its value and sustainability. Multistate field trials were established from 2010 to 2012 in Illinois, Iowa, Ohio, and Wisconsin to examine how hybrid and foliar fungicide influenced disease intensity and yield. The experimental design was in a split-split plot with main plots consisting of hybrids varying in resistance to gray leaf spot (caused by Cercospora zeae-maydis) and northern corn leaf blight (caused by Setosphaera turcica), subplots corresponding to four application timings of the fungicide pyraclostrobin, and sub-subplots represented by inoculations with either C. zeae-maydis, S. turcica, or both at two vegetative growth stages. Fungicide application (VT/R1) significantly reduced total disease severity relative to the control in five of eight site-years (P<0.05). Disease was reduced by approximately 30% at Wisconsin in 2011, 20% at Illinois in 2010, 29% at Iowa in 2010, and 32 and 30% at Ohio in 2010 and 2012, respectively. These disease severities ranged from 0.2 to 0.3% in Wisconsin in 2011 to 16.7 to 22.1% in Illinois in 2010. The untreated control had significantly lower yield (P<0.05) than the fungicide-treated in three site-years. Fungicide application increased the yield by approximately 6% at Ohio in 2010, 5% at Wisconsin in 2010 and 6% in 2011. Yield differences ranged from 8,403 to 8,890 kg/ha in Wisconsin 2011 to 11,362 to 11,919 kg/ha in Wisconsin 2010. Results suggest susceptibility to disease and prevailing environment are important drivers of observed differences. Yield increases as a result of the physiological benefits of plant health benefits under low disease were not consistent. PMID:25760523

  4. Effect of Maize Hybrid and Foliar Fungicides on Yield Under Low Foliar Disease Severity Conditions.

    PubMed

    Mallowa, Sally O; Esker, Paul D; Paul, Pierce A; Bradley, Carl A; Chapara, Venkata R; Conley, Shawn P; Robertson, Alison E

    2015-08-01

    Foliar fungicide use in the U.S. Corn Belt increased in the last decade; however, questions persist pertaining to its value and sustainability. Multistate field trials were established from 2010 to 2012 in Illinois, Iowa, Ohio, and Wisconsin to examine how hybrid and foliar fungicide influenced disease intensity and yield. The experimental design was in a split-split plot with main plots consisting of hybrids varying in resistance to gray leaf spot (caused by Cercospora zeae-maydis) and northern corn leaf blight (caused by Setosphaera turcica), subplots corresponding to four application timings of the fungicide pyraclostrobin, and sub-subplots represented by inoculations with either C. zeae-maydis, S. turcica, or both at two vegetative growth stages. Fungicide application (VT/R1) significantly reduced total disease severity relative to the control in five of eight site-years (P<0.05). Disease was reduced by approximately 30% at Wisconsin in 2011, 20% at Illinois in 2010, 29% at Iowa in 2010, and 32 and 30% at Ohio in 2010 and 2012, respectively. These disease severities ranged from 0.2 to 0.3% in Wisconsin in 2011 to 16.7 to 22.1% in Illinois in 2010. The untreated control had significantly lower yield (P<0.05) than the fungicide-treated in three site-years. Fungicide application increased the yield by approximately 6% at Ohio in 2010, 5% at Wisconsin in 2010 and 6% in 2011. Yield differences ranged from 8,403 to 8,890 kg/ha in Wisconsin 2011 to 11,362 to 11,919 kg/ha in Wisconsin 2010. Results suggest susceptibility to disease and prevailing environment are important drivers of observed differences. Yield increases as a result of the physiological benefits of plant health benefits under low disease were not consistent.

  5. Compressible laminar streaks with wall suction

    NASA Astrophysics Data System (ADS)

    Ricco, Pierre; Shah, Daniel; Hicks, Peter D.

    2013-05-01

    The response of a compressible laminar boundary layer subject to free-stream vortical disturbances and steady mean-flow wall suction is studied. The theoretical frameworks of Leib et al. [J. Fluid Mech. 380, 169-203 (1999), 10.1017/S0022112098003504] and Ricco and Wu [J. Fluid Mech. 587, 97-138 (2007), 10.1017/S0022112007007070], based on the linearized unsteady boundary-region equations, are adopted to study the influence of suction on the kinematic and thermal streaks arising through the interaction between the free-stream vortical perturbations and the boundary layer. In the asymptotic limit of small spanwise wavelength compared with the boundary layer thickness, i.e., when the disturbance flow is conveniently described by the steady compressible boundary region equations, the effect of suction is mild on the velocity fluctuations and negligible on the temperature fluctuations. When the spanwise wavelength is comparable with the boundary layer thickness, small suction values intensify the supersonic streaks, while higher transpiration levels always stabilize the disturbances at all Mach numbers. At larger spanwise wavelengths, very small amplitudes of wall transpiration have a dramatic stabilizing effect on all boundary layer fluctuations, which can take the form of transiently growing thermal streaks, large amplitude streamwise oscillations, or oblique exponentially growing Tollmien-Schlichting waves, depending on the Mach number and the wavelengths. The range of wavenumbers for which the exponential growth occurs becomes narrower and the location of instability is significantly shifted downstream by mild suction, indicating that wall transpiration can be a suitable vehicle for delaying transition when the laminar breakdown is promoted by these unstable disturbances. The typical streamwise wavelength of these disturbances is instead not influenced by suction, and asymptotic triple deck theory predicts the strong changes in growth rate and the very mild

  6. X-ray streak crystal spectography

    SciTech Connect

    Kauffman, R.L.; Brown, T.; Medecki, H.

    1983-07-01

    We have built an x-ray streaked crystal spectrograph for making time-resolved x-ray spectral measurements. This instrument can access Bragg angles from 11/sup 0/ to 38/sup 0/ and x-ray spectra from 200 eV to greater than 10 keV. We have demonstrated resolving powers, E/..delta..E > 200 at 1 keV and time resolution less than 20 psec. A description of the instrument and an example of the data is given.

  7. Whole-genome expression analysis of Rice black-streaked dwarf virus in different plant hosts and small brown planthopper.

    PubMed

    Xu, Qiufang; Ni, Haiping; Zhang, Jinfeng; Lan, Ying; Ren, Chunmei; Zhou, Yijun

    2015-11-10

    Rice black-streaked dwarf virus (RBSDV) can infect a number of gramineous plants and cause severe crop yield losses in southeast Asian countries. The virus is transmitted by small brown planthopper (SBPH) in a persistent circulative manner. The interactions between RBSDV and its different hosts remain unknown. Besides, how the virus adjusts itself to infect different hosts is unclear. In the present study, the relative RNA levels of the thirteen RBSDV genes in rice, maize, wheat, and SBPH were measured by real-time quantitative PCR. P7-1 and P10 genes were predominantly expressed whereas P8 and P7-2 genes were expressed at low levels in plant hosts. Similar to the expression in rice, P7-1 was the most abundantly expressed gene and P8 was expressed at the lowest level in SBPH, indicating that RBSDV adopts the same strategy to infect distinct hosts. The high expression levels of the P7-1 gene in both plants and insect suggest that it can be used as the target gene for disease diagnostics. However, the expression levels of some genes varied from host to host. P5-1, P6 and P9-1, the components of the RBSDV viroplasm, are differentially expressed in different hosts. Moreover, western blot analysis showed that the quantity of the P9-1 protein was more abundant in SBPH than in plant hosts. These data indicate that the virus may adjust its own gene expression to replicate in different hosts. Analysis of time course of gene expression revealed that P7-1 stands out as the only gene highly expressed at the earliest time point and its expression precedes all others throughout infection from 8 to 24days post-inoculation. The high expression levels of the P7-1 gene suggest that it plays a significant role in RBSDV-host interactions.

  8. Whole-genome expression analysis of Rice black-streaked dwarf virus in different plant hosts and small brown planthopper.

    PubMed

    Xu, Qiufang; Ni, Haiping; Zhang, Jinfeng; Lan, Ying; Ren, Chunmei; Zhou, Yijun

    2015-11-10

    Rice black-streaked dwarf virus (RBSDV) can infect a number of gramineous plants and cause severe crop yield losses in southeast Asian countries. The virus is transmitted by small brown planthopper (SBPH) in a persistent circulative manner. The interactions between RBSDV and its different hosts remain unknown. Besides, how the virus adjusts itself to infect different hosts is unclear. In the present study, the relative RNA levels of the thirteen RBSDV genes in rice, maize, wheat, and SBPH were measured by real-time quantitative PCR. P7-1 and P10 genes were predominantly expressed whereas P8 and P7-2 genes were expressed at low levels in plant hosts. Similar to the expression in rice, P7-1 was the most abundantly expressed gene and P8 was expressed at the lowest level in SBPH, indicating that RBSDV adopts the same strategy to infect distinct hosts. The high expression levels of the P7-1 gene in both plants and insect suggest that it can be used as the target gene for disease diagnostics. However, the expression levels of some genes varied from host to host. P5-1, P6 and P9-1, the components of the RBSDV viroplasm, are differentially expressed in different hosts. Moreover, western blot analysis showed that the quantity of the P9-1 protein was more abundant in SBPH than in plant hosts. These data indicate that the virus may adjust its own gene expression to replicate in different hosts. Analysis of time course of gene expression revealed that P7-1 stands out as the only gene highly expressed at the earliest time point and its expression precedes all others throughout infection from 8 to 24days post-inoculation. The high expression levels of the P7-1 gene suggest that it plays a significant role in RBSDV-host interactions. PMID:26149652

  9. Radar-visible wind streaks in the Altiplano of Bolivia

    NASA Technical Reports Server (NTRS)

    Greeley, R.; Christensen, P.

    1984-01-01

    Isolated knobs that are erosional remnants of central volcanoes or of folded rocks occur in several areas of the Altiplano are visible on both optical and images. The optically visible streaks occur in the immediate lee of the knobs, whereas the radar visible streaks occur in the zone downwind between the knobs. Aerial reconnaissance and field studies showed that the optically visible streaks consist of a series of small ( 100 m wide) barchan and barchanoid dunes, intradune sand sheets, and sand hummocks (large shrub coppice dunes) up to 15 m across and 5 m high. On LANDSAT images these features are poorly resolved but combine to form a bright streak. On the radar image, this area also appears brighter than the zone of the radar dark streak; evidently, the dunes and hummocks serve as radar reflectors. The radar dark streak consists of a relatively flat, smooth sand sheet which lacks organized aerolian bedforms, other than occasional ripples. Wind velocity profiles show a greater U value in the optically bright streak zone than in the radar dark streak.

  10. Reinventing MaizeGDB

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The Maize Database (MaizeDB) to the Maize Genetics and Genomics Database (MaizeGDB) turns 20 this year, and such a significant milestone must be celebrated! With the release of the B73 reference sequence and more sequenced genomes on the way, the maize community needs to address various opportunitie...

  11. Quantitative trait loci for resistance to Maize rayado fino virus

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Maize rayado fino virus (MRFV) causes one of the most important virus diseases of maize in regions of Mexico, Central and South America, where it causes moderate to severe yield losses. The virus is found from the southern United States. to northern Argentina where its vector, the maize leafhopper D...

  12. Maize: Overview

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Maize is an important cereal crop that is well-suited to industrial agriculture, both in grain production and in grain utilization. Starch, protein and oil are the three major components of the grain. Several processing methods yield many different food ingredients. In addition, whole grain is pr...

  13. Southern leaf blight disease severity is correlated with decreased maize leaf epiphytic bacterial species richness and the phyllosphere bacterial diversity decline is enhanced by nitrogen fertilization

    PubMed Central

    Manching, Heather C.; Balint-Kurti, Peter J.; Stapleton, Ann E.

    2014-01-01

    Plant leaves are inhabited by a diverse group of microorganisms that are important contributors to optimal growth. Biotic and abiotic effects on plant growth are usually studied in controlled settings examining response to variation in single factors and in field settings with large numbers of variables. Multi-factor experiments with combinations of stresses bridge this gap, increasing our understanding of the genotype-environment-phenotype functional map for the host plant and the affiliated epiphytic community. The maize inbred B73 was exposed to single and combination abiotic and the biotic stress treatments: low nitrogen fertilizer and high levels of infection with southern leaf blight (causal agent Cochliobolus heterostrophus). Microbial epiphyte samples were collected at the vegetative early-season phase and species composition was determined using 16S ribosomal intergenic spacer analysis. Plant traits and level of southern leaf blight disease were measured late-season. Bacterial diversity was different among stress treatment groups (P < 0.001). Lower species richness—alpha diversity—was correlated with increased severity of southern leaf blight disease when disease pressure was high. Nitrogen fertilization intensified the decline in bacterial alpha diversity. While no single bacterial ribotype was consistently associated with disease severity, small sets of ribotypes were good predictors of disease levels. Difference in leaf bacterial-epiphyte diversity early in the season were correlated with plant disease severity, supporting further tests of microbial epiphyte-disease correlations for use in predicting disease progression. PMID:25177328

  14. Characterization of the inaA gene and expression of ice nucleation phenotype in Pantoea ananatis isolates from Maize White Spot disease.

    PubMed

    Miller, A M; Figueiredo, J E F; Linde, G A; Colauto, N B; Paccola-Meirelles, L D

    2016-01-01

    Maize White Spot (MWS), a foliar disease caused by Pantoea ananatis, could cause up to 60% yield loss. Some strains of P. ananatis harboring the ice nucleation gene inaA catalyze the formation of ice nuclei, causing tissue damage at temperatures slightly below freezing. Little is known about the relationship between the presence of the ina gene in this maize pathogen and its expression during the phenomenon of ice nucleus formation. Here, we attempted to verify the presence of the inaA gene and the expression of phenotype in vitro. The identity of the isolates and the presence of the inaA gene were determined by P. ananatis species-specific primers. The expression of the inaA gene was assessed in vitro by the visualization of ice-crystal formation in water at subzero temperatures. A total of ninety P. ananatis isolates from MWS lesions were characterized. The presence of the inaA gene was confirmed by gel electrophoresis of the 350-400-bp PCR products. The inaA primers did not lead to DNA fragment amplification in three isolates. The ice nucleation phenotype was expressed in 83.34% of the isolates carrying the inaA gene. Our study showed that the ice nucleation in P. ananatis isolated from MWS lesions was dependent on the presence of a functional ina gene in the genome. We also found evidence indicating that some P. ananatis strains have a mutated form of the inaA gene, producing a non-functional ice nucleation protein. This is the first report on inaA gene characterization in P. ananatis isolates from Maize White Spot. PMID:26985943

  15. Introgression of chromosome segments from multiple alien species in wheat breeding lines with wheat streak mosaic virus resistance

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Pyramiding of alien-derived Wheat streak mosaic virus (WSMV) resistance and resistance enhancing genes in wheat is a costeffective and environmentally safe strategy for disease control. PCR-based markers and cytogenetic analysis with genomic in situ hybridisation were applied to identify alien chrom...

  16. Progress on Modeling of Ultrafast X-Ray Streak Cameras

    SciTech Connect

    Huang, G.; Byrd, J.M.; Feng, J.; Qiang, J.; Wang, W.

    2007-06-22

    Streak cameras continue to be useful tools for studying phenomena on the picoseconds time scale. We have employed accelerator modeling tools to understand and possibly improve the time resolution of present and future streak cameras. This effort has resulted in an end-to-end model of the camera. This model has contributed to the recent measurement of 230 fsec (FWHM) resolution measured at 266 nm in the Advanced Light Source Streak Camera Laboratory. We describe results from this model that show agreement with the experiments. We also extrapolate the performance of this camera including several possible improvements.

  17. High Performance Imaging Streak Camera for the National Ignition Facility

    SciTech Connect

    Opachich, Y. P.; Kalantar, D.; MacPhee, A.; Holder, J.; Kimbrough, J.; Bell, P. M.; Bradley, D.; Hatch, B.; Brown, C.; Landen, O.; Perfect, B. H.; Guidry, B.; Mead, A.; Charest, M.; Palmer, N.; Homoelle, D.; Browning, D.; Silbernagel, C.; Brienza-Larsen, G.; Griffin, M.; Lee, J. J.; Haugh, M. J.

    2012-01-01

    An x-ray streak camera platform has been characterized and implemented for use at the National Ignition Facility. The camera has been modified to meet the experiment requirements of the National Ignition Campaign and to perform reliably in conditions that produce high EMI. A train of temporal UV timing markers has been added to the diagnostic in order to calibrate the temporal axis of the instrument and the detector efficiency of the streak camera was improved by using a CsI photocathode. The performance of the streak camera has been characterized and is summarized in this paper. The detector efficiency and cathode measurements are also presented.

  18. Temporal Contrast Changes in Dark Slope Streaks on Mars

    NASA Astrophysics Data System (ADS)

    Chilton, H.; Phillips, C. B.; Fenton, L. K.; Brown, A. J.

    2012-12-01

    Dark slope streaks on Mars, first observed in Viking images, provide insight into one of the most active and dynamic processes observed on the planet's surface. While various formation models have been suggested [1][2][3], dust avalanches seem to best explain streak origin and characteristics[4][5]. New dark streaks are observed to have the greatest contrast to their surroundings while older streaks have lower contrast, suggesting that streaks fade over time. One theory for this is atmospheric dust fallout slowly raising the albedo of the surface exposed by the dust avalanche, resulting in increased streak albedo over time until the streak becomes indistinguishable from the surrounding surface. In this study, we attempt an initial evaluation of changes in streak brightness relative to surroundings, with a first order correction for incidence angle[6] based on MOLA data. CRISM images were first identified for spatial and temporal overlap, then further selected for those image sets with well-matched viewing geometries. Locations included Nicholson Crater (CRISM images: frt0000c287_07_de165l, hrl0000d0f1_7_de165l, frt00018c69_07_de165l) and South of Nestus Valles (CRISM images: hrl00004a5e_07_de181l, hrl0000812a_07_de182l) as well as Naktong Vallis (CRISM images: hrl0000898d_07_de182l, hrl00005337_07_de182l) and an area in Lycus Sulci (CRISM images: hrl0000a52a_07_de166l, hrl0000ce5f_07_if175l). We focused on 1 micron wavelength CRISM images in order to reduce atmosphric interference. From here, brightness (observed radiance divided by solar irradiance at Mars divided by pi) values were collected along individual streaks, with measurements at multiple locations along the streak length and alongside at points of similar elevation to streak measurements to establish an average contrast ratio. Both on-streak and off-streak values were divided by the cosine of their respective local MOLA incidence angles to correct for brightness variation due to solar flux and

  19. Statistical characteristics of streak artifacts on CT images: relationship between streak artifacts and mA s values.

    PubMed

    Imai, Kuniahru; Ikeda, Mitsuru; Enchi, Yukihiro; Niimi, Takanaga

    2009-02-01

    The purpose of this study is to investigate how streak artifacts on computed tomography (CT) images vary with reduction in radiation doses by assessing the quantitative relationship between the streak artifacts and milliampere-time product (mA s) values. A commercially available chest phantom was used to measure the streak artifacts on the CT images obtained using a 4- and 16-multidetector-row helical CT scanners with various mA s values at a constant tube voltage of 120 kVp. The cardiac slice image was employed as a target image for evaluating the streak artifacts on the CT image. Eighty parallel line segments with a length of 20 pixels were placed perpendicular to numerous streak artifacts on the cardiac slice image, and the largest difference between adjacent CT values in each of the 80 CT-value profiles of these line segments was employed as a feature variable of streak artifacts; these feature variables have been analyzed by the extreme value theory. The largest difference between adjacent CT values in each CT-value profile can be statistically modeled by a Gumbel distribution. Further, the maximum level of streak artifacts on CT images that will be tolerated for clinical use and low-dose CT screening examination was expected to be estimated using the location parameter in the Gumbel distribution.

  20. Analysis of quantitative disease resistance to southern leaf blight and of multiple disease resistance in maize, using near-isogenic lines

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Maize inbred lines NC292 and NC330 were derived by repeated backcrossing of an elite source of southern leaf blight (SLB) resistance (NC250P) to the SLB-susceptible line B73, with selection for SLB resistance among and within backcross families at each generation. Consequently, while B73 is very SLB...

  1. Streak instability induced by bedload diffusion

    NASA Astrophysics Data System (ADS)

    Abramian, Anaïs; Seizilles, Grégoire; Devauchelle, Olivier; Lajeunesse, Eric

    2016-04-01

    The bed of an alluvial river is made of the sediment it transports. Its shape and size are controlled mostly by bedload transport which, at first order, entrains sediment grains along the flow. Gravity also pulls the moving grains towards the center of the channel, thus eroding the banks continually (Parker 1978). However, laboratory observations show that, due to the bed roughness, the trajectory of a transported grain fluctuates in the transverse direction (Seizilles et al. 2014). The bedload layer is therefore a collection of random walkers which diffuse towards the less active areas of the bed. In a river at equilibrium, bedload diffusion counteracts gravity to maintain the banks. If an initially flat bed of sediment is perturbed with longitudinal streaks, the flow-induced shear stress is weaker where the flow is shallower. Therefore, we expect bedload diffusion to induce a flux of sediment towards the crests of the perturbation. This positive feedback induces an instability which can generate new channels. We suggest that this mechanism could explain the transition from a single-thread river to a braided one.

  2. Induced resistance responses in maize.

    PubMed

    Morris, S W; Vernooij, B; Titatarn, S; Starrett, M; Thomas, S; Wiltse, C C; Frederiksen, R A; Bhandhufalck, A; Hulbert, S; Uknes, S

    1998-07-01

    Systemic acquired resistance (SAR) is a widely distributed plant defense system that confers broad-spectrum disease resistance and is accompanied by coordinate expression of the so-called SAR genes. This type of resistance and SAR gene expression can be mimicked with chemical inducers of resistance. Here, we report that chemical inducers of resistance are active in maize. Chemical induction increases resistance to downy mildew and activates expression of the maize PR-1 and PR-5 genes. These genes are also coordinately activated by pathogen infection and function as indicators of the defense reaction. Specifically, after pathogen infection, the PR-1 and PR-5 genes are induced more rapidly and more strongly in an incompatible than in a compatible interaction. In addition, we show that monocot lesion mimic plants also express these defense-related genes and that they have increased levels of salicylic acid after lesions develop, similar to pathogeninfected maize plants. The existence of chemically inducible disease resistance and PR-1 and PR-5 gene expression in maize indicates that maize is similar to dicots in many aspects of induced resistance. This reinforces the notion of an ancient plant-inducible defense pathway against pathogen attack that is shared between monocots and dicots.

  3. Streak image denoising and segmentation using adaptive Gaussian guided filter.

    PubMed

    Jiang, Zhuocheng; Guo, Baoping

    2014-09-10

    In streak tube imaging lidar (STIL), streak images are obtained using a CCD camera. However, noise in the captured streak images can greatly affect the quality of reconstructed 3D contrast and range images. The greatest challenge for streak image denoising is reducing the noise while preserving details. In this paper, we propose an adaptive Gaussian guided filter (AGGF) for noise removal and detail enhancement of streak images. The proposed algorithm is based on a guided filter (GF) and part of an adaptive bilateral filter (ABF). In the AGGF, the details are enhanced by optimizing the offset parameter. AGGF-denoised streak images are significantly sharper than those denoised by the GF. Moreover, the AGGF is a fast linear time algorithm achieved by recursively implementing a Gaussian filter kernel. Experimentally, AGGF demonstrates its capacity to preserve edges and thin structures and outperforms the existing bilateral filter and domain transform filter in terms of both visual quality and peak signal-to-noise ratio performance.

  4. Simulation of FEL pulse length calculation with THz streaking method.

    PubMed

    Gorgisyan, I; Ischebeck, R; Prat, E; Reiche, S; Rivkin, L; Juranić, P

    2016-05-01

    Having accurate and comprehensive photon diagnostics for the X-ray pulses delivered by free-electron laser (FEL) facilities is of utmost importance. Along with various parameters of the photon beam (such as photon energy, beam intensity, etc.), the pulse length measurements are particularly useful both for the machine operators to measure the beam parameters and monitor the stability of the machine performance, and for the users carrying out pump-probe experiments at such facilities to better understand their measurement results. One of the most promising pulse length measurement techniques used for photon diagnostics is the THz streak camera which is capable of simultaneously measuring the lengths of the photon pulses and their arrival times with respect to the pump laser. This work presents simulations of a THz streak camera performance. The simulation procedure utilizes FEL pulses with two different photon energies in hard and soft X-ray regions, respectively. It recreates the energy spectra of the photoelectrons produced by the photon pulses and streaks them by a single-cycle THz pulse. Following the pulse-retrieval procedure of the THz streak camera, the lengths were calculated from the streaked spectra. To validate the pulse length calculation procedure, the precision and the accuracy of the method were estimated for streaking configuration corresponding to previously performed experiments. The obtained results show that for the discussed setup the method is capable of measuring FEL pulses with about a femtosecond accuracy and precision. PMID:27140142

  5. Streak image denoising and segmentation using adaptive Gaussian guided filter.

    PubMed

    Jiang, Zhuocheng; Guo, Baoping

    2014-09-10

    In streak tube imaging lidar (STIL), streak images are obtained using a CCD camera. However, noise in the captured streak images can greatly affect the quality of reconstructed 3D contrast and range images. The greatest challenge for streak image denoising is reducing the noise while preserving details. In this paper, we propose an adaptive Gaussian guided filter (AGGF) for noise removal and detail enhancement of streak images. The proposed algorithm is based on a guided filter (GF) and part of an adaptive bilateral filter (ABF). In the AGGF, the details are enhanced by optimizing the offset parameter. AGGF-denoised streak images are significantly sharper than those denoised by the GF. Moreover, the AGGF is a fast linear time algorithm achieved by recursively implementing a Gaussian filter kernel. Experimentally, AGGF demonstrates its capacity to preserve edges and thin structures and outperforms the existing bilateral filter and domain transform filter in terms of both visual quality and peak signal-to-noise ratio performance. PMID:25321679

  6. Simulation of FEL pulse length calculation with THz streaking method

    PubMed Central

    Gorgisyan, I.; Ischebeck, R.; Prat, E.; Reiche, S.; Rivkin, L.; Juranić, P.

    2016-01-01

    Having accurate and comprehensive photon diagnostics for the X-ray pulses delivered by free-electron laser (FEL) facilities is of utmost importance. Along with various parameters of the photon beam (such as photon energy, beam intensity, etc.), the pulse length measurements are particularly useful both for the machine operators to measure the beam parameters and monitor the stability of the machine performance, and for the users carrying out pump–probe experiments at such facilities to better understand their measurement results. One of the most promising pulse length measurement techniques used for photon diagnostics is the THz streak camera which is capable of simultaneously measuring the lengths of the photon pulses and their arrival times with respect to the pump laser. This work presents simulations of a THz streak camera performance. The simulation procedure utilizes FEL pulses with two different photon energies in hard and soft X-ray regions, respectively. It recreates the energy spectra of the photoelectrons produced by the photon pulses and streaks them by a single-cycle THz pulse. Following the pulse-retrieval procedure of the THz streak camera, the lengths were calculated from the streaked spectra. To validate the pulse length calculation procedure, the precision and the accuracy of the method were estimated for streaking configuration corresponding to previously performed experiments. The obtained results show that for the discussed setup the method is capable of measuring FEL pulses with about a femtosecond accuracy and precision. PMID:27140142

  7. Study of Geometric Parameters of Slope Streaks on Mars.

    NASA Astrophysics Data System (ADS)

    Brusnikin, Eugene; Kreslavsky, Mikhail; Karachevtseva, Irina; Zubarev, Anatoliy; Patratiy, Vyacheslav

    2015-04-01

    Slope streaks are a unique active phenomenon observed in low-latitude dusty regions on Mars. They are dark markings formed by an unknown type of run-away downslope propagation of surface disturbance. There are two kinds of hypotheses of their formation mechanism: "dry", involving granular follow, in particular, dust avalanche, and "wet", involving liquid flow, in particular, percolation of concentrated brines in shallow subsurface (1). Study of geometric characteristics of the slope streaks, especially their slopes, is a way to decipher their origin. We are carrying out an extensive set of measurements of geometric parameters of the slope streaks. We use stereo pairs of images obtained by High Resolution Imaging Science Experiment (HiRISE) onboard MRO orbital mission to Mars. These stereo pairs potentially allow geometric measurements (both horizontal and vertical) with accuracy on an order of a meter. Unfortunately, the digital terrain model is currently released for only one stereo pair in the regions of slope streak occurrence, and we have to work with raw, unprocessed stereo pairs. We perform direct photogrammetric measurements using PHOTOMOD software complex (http://www.racurs.ru/). We use our custom software to import "raw" HiRISE imgas (EDRs) and supplementary geometric information from SPICE into PHOTOMOD (2). We select tens to a hundred meters long segments in the beginning and the end of selected streaks and register length, azimuth, and slope of each segment. We also search for anomalously gentle parts of streaks. We analyze the obtained results by means of ESRI ArcGIS software. Our survey is in progress. So far we registered over a hundred of streaks. We found that the extent of the streaks varies from several meters to hundreds of meters. The streaks are formed in locales with a slope from 17 to 37 degrees. The lower boundary indicates that the streaks can propagate on slopes that are significantly gentler than the static angle of repose. Distal

  8. RNAi-mediated resistance to Cassava brown streak Uganda virus in transgenic cassava.

    PubMed

    Yadav, Jitender S; Ogwok, Emmanuel; Wagaba, Henry; Patil, Basavaprabhu L; Bagewadi, Basavaraj; Alicai, Titus; Gaitan-Solis, Eliana; Taylor, Nigel J; Fauquet, Claude M

    2011-09-01

    Cassava brown streak disease (CBSD), caused by Cassava brown streak Uganda virus (CBSUV) and Cassava brown streak virus (CBSV), is of new epidemic importance to cassava (Manihot esculenta Crantz) production in East Africa, and an emerging threat to the crop in Central and West Africa. This study demonstrates that at least one of these two ipomoviruses, CBSUV, can be efficiently controlled using RNA interference (RNAi) technology in cassava. An RNAi construct targeting the near full-length coat protein (FL-CP) of CBSUV was expressed constitutively as a hairpin construct in cassava. Transgenic cassava lines expressing small interfering RNAs (siRNAs) against this sequence showed 100% resistance to CBSUV across replicated graft inoculation experiments. Reverse transcriptase-polymerase chain reaction (RT-PCR) analysis showed the presence of CBSUV in leaves and some tuberous roots from challenged controls, but not in the same tissues from transgenic plants. This is the first demonstration of RNAi-mediated resistance to the ipomovirus CBSUV in cassava.

  9. Structure-Based Computational Study of Two Disease Resistance Gene Homologues (Hm1 and Hm2) in Maize (Zea mays L.) with Implications in Plant-Pathogen Interactions

    PubMed Central

    Maharana, Jitendra; Sahu, Jagajjit; Sen, Priyabrata; Modi, Mahendra Kumar; Choudhury, Manabendra Dutta; Barooah, Madhumita

    2014-01-01

    The NADPH-dependent HC-toxin reductases (HCTR1 and 2) encoded by enzymatic class of disease resistance homologous genes (Hm1 and Hm2) protect maize by detoxifying a cyclic tetrapeptide, HC-toxin, secreted by the fungus Cochliobolus carbonum race 1(CCR1). Unlike the other classes' resistance (R) genes, HCTR-mediated disease resistance is an inimitable mechanism where the avirulence (Avr) component from CCR1 is not involved in toxin degradation. In this study, we attempted to decipher cofactor (NADPH) recognition and mode of HC-toxin binding to HCTRs through molecular docking, molecular dynamics (MD) simulations and binding free energy calculation methods. The rationality and the stability of docked complexes were validated by 30-ns MD simulation. The binding free energy decomposition of enzyme-cofactor complex was calculated to find the driving force behind cofactor recognition. The overall binding free energies of HCTR1-NADPH and HCTR2-NADPH were found to be −616.989 and −16.9749 kJ mol−1 respectively. The binding free energy decomposition revealed that the binding of NADPH to the HCTR1 is mainly governed by van der Waals and nonpolar interactions, whereas electrostatic terms play dominant role in stabilizing the binding mode between HCTR2 and NADPH. Further, docking analysis of HC-toxin with HCTR-NADPH complexes showed a distinct mode of binding and the complexes were stabilized by a strong network of hydrogen bond and hydrophobic interactions. This study is the first in silico attempt to unravel the biophysical and biochemical basis of cofactor recognition in enzymatic class of R genes in cereal crop maize. PMID:24847713

  10. Streak detection and analysis pipeline for optical images

    NASA Astrophysics Data System (ADS)

    Virtanen, J.; Granvik, M.; Torppa, J.; Muinonen, K.; Poikonen, J.; Lehti, J.; Säntti, T.; Komulainen, T.; Flohrer, T.

    2014-07-01

    We describe a novel data processing and analysis pipeline for optical observations of moving objects, either of natural (asteroids, meteors) or artificial origin (satellites, space debris). The monitoring of the space object populations requires reliable acquisition of observational data to support the development and validation of population models, and to build and maintain catalogues of orbital elements. The orbital catalogues are, in turn, needed for the assessment of close approaches (for asteroids, with the Earth; for satellites, with each other) and for the support of contingency situations or launches. For both types of populations, there is also increasing interest to detect fainter objects corresponding to the small end of the size distribution. We focus on the low signal-to-noise (SNR) detection of objects with high angular velocities, resulting in long and faint object trails, or streaks, in the optical images. The currently available, mature image processing algorithms for detection and astrometric reduction of optical data cover objects that cross the sensor field-of-view comparably slowly, and, particularly for satellites, within a rather narrow, predefined range of angular velocities. By applying specific tracking techniques, the objects appear point-like or as short trails in the exposures. However, the general survey scenario is always a 'track-before-detect' problem, resulting in streaks of arbitrary lengths. Although some considerations for low-SNR processing of streak-like features are available in the current image processing and computer vision literature, algorithms are not readily available yet. In the ESA-funded StreakDet (Streak detection and astrometric reduction) project, we develop and evaluate an automated processing pipeline applicable to single images (as compared to consecutive frames of the same field) obtained with any observing scenario, including space-based surveys and both low- and high-altitude populations. The algorithmic

  11. Design and Field Test of a Galvanometer Deflected Streak Camera

    SciTech Connect

    Lai, C C; Goosman, D R; Wade, J T; Avara, R

    2002-11-08

    We have developed a compact fieldable optically-deflected streak camera first reported in the 20th HSPP Congress. Using a triggerable galvanometer that scans the optical signal, the imaging and streaking function is an all-optical process without incurring any photon-electron-photon conversion or photoelectronic deflection. As such, the achievable imaging quality is limited mainly only by optical design, rather than by multiple conversions of signal carrier and high voltage electron-optics effect. All core elements of the camera are packaged into a 12 inch x 24 inch footprint box, a size similar to that of a conventional electronic streak camera. At LLNL's Site-300 Test Site, we have conducted a Fabry-Perot interferometer measurement of fast object velocity using this all-optical camera side-by-side with an intensified electronic streak camera. These two cameras are configured as two independent instruments for recording synchronously each branch of the 50/50 splits from one incoming signal. Given the same signal characteristics, the test result has undisputedly demonstrated superior imaging performance for the all-optical streak camera. It produces higher signal sensitivity, wider linear dynamic range, better spatial contrast, finer temporal resolution, and larger data capacity as compared with that of the electronic counterpart. The camera had also demonstrated its structural robustness and functional consistence to be well compatible with field environment. This paper presents the camera design and the test results in both pictorial records and post-process graphic summaries.

  12. The Dellistrique 2S - A 200 Channel Streak Camera

    NASA Astrophysics Data System (ADS)

    Majumdar, S.

    1985-02-01

    Despite a great deal of effort to improve time resolution of streak cameras, the best reported time resolution remained just under one picosecond for more than a decade. However, the sensitivity and resolution of these devices have improved substantially over this time. In this paper the design of a very high performance streak camera, capable of resolving one picosecond on 200 parallel channels with single photo-electron detection capability: the Dellistrique 2S. The system comprises of a streak tube type Picotron 200 with a photocathode resolving 200 spatial channels along a slit and with an extraction field near the photocathode of greater than 16 KV per cm and with a non saturating phosphor screen as the main component. There is post streak tube intensification of 30,000 at the streak tube output wavelength which increases both the sensitivity of the system. The intensifier is coupled to a CCD readout device fibre-optically for producing a two dimensional image with a dynamic range of greater than 500. The camera can be operated at a repetition rate of between 80 MHz and 240 MHz using R.F. scanning methods. Upto 20 parallel channels have been tried with parallel information recording, which is well below the tube's capability of recording 200 independent channels. The image is virtually distortion free across the whole usable screen length of 45 mm for a large screen tube.

  13. Widespread occurrence and diversity of Cassava brown streak virus (Potyviridae: Ipomovirus) in Tanzania.

    PubMed

    Rwegasira, G M; Momanyi, G; Rey, M E C; Kahwa, G; Legg, J P

    2011-10-01

    Cassava brown streak disease (CBSD) has been a problem in Tanzania since 1936. Existing literature indicated limited distribution of the disease to low altitudes, usually <100 m above sea level, but the current geographical distribution of the disease was not known. Whether a single or many strains for the virus exist in Tanzania had not been reported to date. In this study, CBSD was recorded from sea level to ≈1,800 m above sea level. In total, 2,730 cassava plants were assessed for CBSD leaf symptoms in 91 fields and root symptoms were assessed at 81 sites. A sample was taken from each site for laboratory screening for Cassava brown streak virus (CBSV). CBSD mean foliar and root incidences were 38 and 36%, respectively. Reverse-transcription polymerase chain reaction of a partial 3'-terminal coat protein (CP) region of CBSV indicated the presence of CBSV in 67 of the 91 (73%) samples. Forty-three amplicons were sequenced, and phylogenetic comparisons with nucleotide sequences from GenBank (National Center for Biotechnology Information database) suggested that one major clade of CBSV primarily exists in Tanzania. However, there was nucleotide sequence divergence of up to 19% among the 42 isolates. In all, 42 of the 43 sequences had 80 to 100% nucleotide identity with 6 previously reported CP-CBSV sequences (from Mozambique and Tanzania). In total, 13 of 42 isolates had <80% nucleotide identities with three previously reported Ugandan CBSV sequences. One isolate, FJ687177, shared <78% sequence identity with the other Tanzanian sequences but was closely related (93%) to Ugandan isolates. It is likely that isolate FJ687177 may belong to a less widely distributed recently described species (clade 2) of CBSV, named Ugandan cassava brown streak virus (UCBSV).

  14. Picosecond X-ray streak camera dynamic range measurement

    NASA Astrophysics Data System (ADS)

    Zuber, C.; Bazzoli, S.; Brunel, P.; Fronty, J.-P.; Gontier, D.; Goulmy, C.; Raimbourg, J.; Rubbelynck, C.; Trosseille, C.

    2016-09-01

    Streak cameras are widely used to record the spatio-temporal evolution of laser-induced plasma. A prototype of picosecond X-ray streak camera has been developed and tested by Commissariat à l'Énergie Atomique et aux Énergies Alternatives to answer the Laser MegaJoule specific needs. The dynamic range of this instrument is measured with picosecond X-ray pulses generated by the interaction of a laser beam and a copper target. The required value of 100 is reached only in the configurations combining the slowest sweeping speed and optimization of the streak tube electron throughput by an appropriate choice of high voltages applied to its electrodes.

  15. Attosecond streaking in a nano-plasmonic field

    NASA Astrophysics Data System (ADS)

    Kelkensberg, F.; Koenderink, A. F.; Vrakking, M. J. J.

    2012-09-01

    A theoretical study of the application of attosecond streaking spectroscopy to time-resolved studies of the plasmonic fields surrounding isolated, resonantly excited spherical nanoparticles is presented. A classification of the different regimes in attosecond streaking is proposed and identified in our results that are derived from Mie calculations of plasmon fields, coupled to classical electron trajectory simulations. It is shown that in an attosecond streaking experiment, the electrons are almost exclusively sensitive to the component of the field parallel to the direction in which they are detected. This allows one to probe the different components of the field individually by resolving the angle of emission of the electrons. Finally, simulations based on fields calculated by finite-difference time-domain (FDTD) are compared with the results obtained using Mie fields. The two are found to be in good agreement with each other, supporting the notion that FDTD methods can be used to reliably investigate non-spherical structures.

  16. A time-resolved image sensor for tubeless streak cameras

    NASA Astrophysics Data System (ADS)

    Yasutomi, Keita; Han, SangMan; Seo, Min-Woong; Takasawa, Taishi; Kagawa, Keiichiro; Kawahito, Shoji

    2014-03-01

    This paper presents a time-resolved CMOS image sensor with draining-only modulation (DOM) pixels for tube-less streak cameras. Although the conventional streak camera has high time resolution, the device requires high voltage and bulky system due to the structure with a vacuum tube. The proposed time-resolved imager with a simple optics realize a streak camera without any vacuum tubes. The proposed image sensor has DOM pixels, a delay-based pulse generator, and a readout circuitry. The delay-based pulse generator in combination with an in-pixel logic allows us to create and to provide a short gating clock to the pixel array. A prototype time-resolved CMOS image sensor with the proposed pixel is designed and implemented using 0.11um CMOS image sensor technology. The image array has 30(Vertical) x 128(Memory length) pixels with the pixel pitch of 22.4um. .

  17. Streak Camera Performance with Large-Format CCD Readout

    SciTech Connect

    Lerche, R A; Andrews, D S; Bell, P M; Griffith, R L; McDonald, J W; Torres, P III; Vergel de Dios, G

    2003-07-08

    The ICF program at Livermore has a large inventory of optical streak cameras that were built in the 1970s and 1980s. The cameras include micro-channel plate image-intensifier tubes (IIT) that provide signal amplification and early lens-coupled CCD readouts. Today, these cameras are still very functional, but some replacement parts such as the original streak tube, CCD, and IIT are scarce and obsolete. This article describes recent efforts to improve the performance of these cameras using today's advanced CCD readout technologies. Very sensitive, large-format CCD arrays with efficient fiber-optic input faceplates are now available for direct coupling with the streak tube. Measurements of camera performance characteristics including linearity, spatial and temporal resolution, line-spread function, contrast transfer ratio (CTR), and dynamic range have been made for several different camera configurations: CCD coupled directly to the streak tube, CCD directly coupled to the IIT, and the original configuration with a smaller CCD lens coupled to the IIT output. Spatial resolution (limiting visual) with and without the IIT is 8 and 20 lp/mm, respectively, for photocathode current density up to 25% of the Child-Langmuir (C-L) space-charge limit. Temporal resolution (fwhm) deteriorates by about 20% when the cathode current density reaches 10% of the C-L space charge limit. Streak tube operation with large average tube current was observed by illuminating the entire slit region through a Ronchi ruling and measuring the CTR. Sensitivity (CCD electrons per streak tube photoelectron) for the various configurations ranged from 7.5 to 2,700 with read noise of 7.5 to 10.5 electrons. Optimum spatial resolution is achieved when the IIT is removed. Maximum dynamic range requires a configuration where a single photoelectron from the photocathode produces a signal that is 3 to 5 times the read noise.

  18. Wheat streak mosaic virus-Structural parameters for a Potyvirus

    SciTech Connect

    Parker, Lauren; Kendall, Amy; Berger, P.H.; Shiel, P.J.; Stubbs, Gerald . E-mail: gerald.stubbs@vanderbilt.edu

    2005-09-15

    Wheat streak mosaic virus is a Tritimovirus, a member of the Potyviridae family, which includes the very large Potyvirus genus. We have examined wheat streak mosaic virus by electron microscopy and fiber diffraction from partially oriented sols, and analyzed the results to estimate the symmetry and structural parameters of the viral helix. The virions have an apparent radius of 63 {+-} 5 A. The viral helix has a pitch of 33.4 A {+-} 0.6 A. There appear to be 6.9 subunits per turn of the helix, although we cannot completely eliminate values of 5.9 or 7.9 for this parameter.

  19. Performance of Laser Megajoule's x-ray streak camera

    NASA Astrophysics Data System (ADS)

    Zuber, C.; Bazzoli, S.; Brunel, P.; Burillo, M.; Fronty, J. P.; Gontier, D.; Goulmy, C.; Moreau, I.; Oudot, G.; Rubbelynck, C.; Soullié, G.; Stemmler, P.; Trosseille, C.

    2016-11-01

    A prototype of a picosecond x-ray streak camera has been developed and tested by Commissariat à l'Énergie Atomique et aux Énergies Alternatives to provide plasma-diagnostic support for the Laser Megajoule. We report on the measured performance of this streak camera, which almost fulfills the requirements: 50-μm spatial resolution over a 15-mm field in the photocathode plane, 17-ps temporal resolution in a 2-ns timebase, a detection threshold lower than 625 nJ/cm2 in the 0.05-15 keV spectral range, and a dynamic range greater than 100.

  20. Genetic structure of rice black-streaked dwarf virus populations in China.

    PubMed

    Yin, Xiao; Zheng, Fang-Qiang; Tang, Wei; Zhu, Qin-Qin; Li, Xiang-Dong; Zhang, Guang-Min; Liu, Huan-Ting; Liu, Bao-Shen

    2013-12-01

    Rice black-streaked dwarf virus (RBSDV) is a double-stranded RNA (dsRNA) virus belonging to the genus Fijivirus in the family Reoviridae. The genome of RBSDV consists of ten dsRNA segments. Although RBSDV has caused significant economic losses to rice and maize production in the past few years in China, its molecular diversity and evolution remain largely unknown. To elucidate the factor(s) underlying the evolution of RBSDV, we determined segment 8 (S8; carrying ORF8 encoding the minor core capsid protein) sequences of 101 samples and segment 10 (S10; carrying ORF10 encoding the major capsid protein) sequences of 103 samples. The results show that both ORF8 and ORF10 are under negative selection. The S8 of three isolates and S10 of two isolates are recombinants. The RBSDV population in China can be classified into three groups according to S8 sequences or into two groups according to S10 sequences, irrespective of host or geographical origin. Of the RBSDV isolates with both S8 and S10 sequences available, 17 are between-group reassortants and 30 are between-subgroup reassortants. The RBSDV subpopulations from different geographical regions and hosts show frequent gene flow within or between subpopulations. The RBSDV population from maize is in a state of expansion. In this study, no new emergent population was detected. Taken together, the results indicate that, in addition to recombination and negative selection, reassortment and gene flow are important factors that drive evolution of RBSDV in China.

  1. Reliable and Repeatable Characterication of Optical Streak Cameras

    SciTech Connect

    Kalantar, D; Charest, M; Torres III, P; Charest, M

    2008-05-06

    Optical streak cameras are used as primary diagnostics for a wide range of physics and laser experiments at facilities such as the National Ignition Facility (NIF). To meet the strict accuracy requirements needed for these experiments, the systematic nonlinearities of the streak cameras (attributed to nonlinearities in the optical and electrical components that make up the streak camera system) must be characterized. In some cases the characterization information is used as a guide to help determine how experiment data should be taken. In other cases, the characterization data are applied to the raw data images to correct for the nonlinearities. In order to characterize an optical streak camera, a specific set of data is collected, where the response to defined inputs are recorded. A set of analysis software routines has been developed to extract information such as spatial resolution, dynamic range, and temporal resolution from this data set. The routines are highly automated, requiring very little user input and thus provide very reliable and repeatable results that are not subject to interpretation. An emphasis on quality control has been placed on these routines due to the high importance of the camera characterization information.

  2. Reliable and Repeatable Characterization of Optical Streak Cameras

    SciTech Connect

    Michael Charest Jr., Peter Torres III, Christopher Silbernagel, and Daniel Kalantar

    2008-10-31

    Optical streak cameras are used as primary diagnostics for a wide range of physics and laser experiments at facilities such as the National Ignition Facility (NIF). To meet the strict accuracy requirements needed for these experiments, the systematic nonlinearities of the streak cameras (attributed to nonlinearities in the optical and electrical components that make up the streak camera system) must be characterized. In some cases the characterization information is used as a guide to help determine how experiment data should be taken. In other cases, the characterization data are applied to the raw data images to correct for the nonlinearities. In order to characterize an optical streak camera, a specific set of data is collected, where the response to defined inputs are recorded. A set of analysis software routines has been developed to extract information such as spatial resolution, dynamic range, and temporal resolution from this data set. The routines are highly automated, requiring very little user input and thus provide very reliable and repeatable results that are not subject to interpretation. An emphasis on quality control has been placed on these routines due to the high importance of the camera characterization information.

  3. Reliable and repeatable characterization of optical streak cameras.

    PubMed

    Charest, Michael R; Torres, Peter; Silbernagel, Christopher T; Kalantar, Daniel H

    2008-10-01

    Optical streak cameras are used as primary diagnostics for a wide range of physics and laser experiments at facilities such as the National Ignition Facility. To meet the strict accuracy requirements needed for these experiments, the systematic nonlinearities of the streak cameras (attributed to nonlinearities in the optical and electrical components that make up the streak camera system) must be characterized. In some cases the characterization information is used as a guide to help determine how experiment data should be taken. In other cases, the characterization data are applied to the raw data images to correct for the nonlinearities. In order to characterize an optical streak camera, a specific set of data is collected, where the response to defined inputs are recorded. A set of analysis software routines has been developed to extract information such as spatial resolution, dynamic range, and temporal resolution from this data set. The routines are highly automated, requiring very little user input and thus provide very reliable and repeatable results that are not subject to interpretation. An emphasis on quality control has been placed on these routines due to the high importance of the camera characterization information.

  4. Silent polypoidal choroidal vasculopathy in a patient with angioid streaks.

    PubMed

    Cebeci, Zafer; Bayraktar, Serife; Oray, Merih; Kir, Nur

    2016-01-01

    We present a case of silent polypoidal choroidal vasculopathy (PCV) in a patient with angioid streaks. PCV was detected during a routine ophthalmic examination and confirmed by fluorescein angiography, indocyanine green angiography, and optical coherence tomography. After 2 years of follow-up, the PCV remained silent without any complications. We report this rare coexistence and review literature on this topic. PMID:27463636

  5. Soft x-ray streak camera for laser fusion applications

    SciTech Connect

    Stradling, G.L.

    1981-04-01

    This thesis reviews the development and significance of the soft x-ray streak camera (SXRSC) in the context of inertial confinement fusion energy development. A brief introduction of laser fusion and laser fusion diagnostics is presented. The need for a soft x-ray streak camera as a laser fusion diagnostic is shown. Basic x-ray streak camera characteristics, design, and operation are reviewed. The SXRSC design criteria, the requirement for a subkilovolt x-ray transmitting window, and the resulting camera design are explained. Theory and design of reflector-filter pair combinations for three subkilovolt channels centered at 220 eV, 460 eV, and 620 eV are also presented. Calibration experiments are explained and data showing a dynamic range of 1000 and a sweep speed of 134 psec/mm are presented. Sensitivity modifications to the soft x-ray streak camera for a high-power target shot are described. A preliminary investigation, using a stepped cathode, of the thickness dependence of the gold photocathode response is discussed. Data from a typical Argus laser gold-disk target experiment are shown.

  6. MaizeCyc: Metabolic networks in maize

    Technology Transfer Automated Retrieval System (TEKTRAN)

    MaizeCyc is a catalog of known and predicted metabolic and transport pathways that enables plant researchers to graphically represent the metabolome of maize (Zea mays), thereby supporting integrated systems-biology analysis. Supported analyses include molecular and genetic/phenotypic profiling (e.g...

  7. Hitting is contagious in baseball: evidence from long hitting streaks.

    PubMed

    Bock, Joel R; Maewal, Akhilesh; Gough, David A

    2012-01-01

    Data analysis is used to test the hypothesis that "hitting is contagious". A statistical model is described to study the effect of a hot hitter upon his teammates' batting during a consecutive game hitting streak. Box score data for entire seasons comprising [Formula: see text] streaks of length [Formula: see text] games, including a total [Formula: see text] observations were compiled. Treatment and control sample groups ([Formula: see text]) were constructed from core lineups of players on the streaking batter's team. The percentile method bootstrap was used to calculate [Formula: see text] confidence intervals for statistics representing differences in the mean distributions of two batting statistics between groups. Batters in the treatment group (hot streak active) showed statistically significant improvements in hitting performance, as compared against the control. Mean [Formula: see text] for the treatment group was found to be [Formula: see text] to [Formula: see text] percentage points higher during hot streaks (mean difference increased [Formula: see text] points), while the batting heat index [Formula: see text] introduced here was observed to increase by [Formula: see text] points. For each performance statistic, the null hypothesis was rejected at the [Formula: see text] significance level. We conclude that the evidence suggests the potential existence of a "statistical contagion effect". Psychological mechanisms essential to the empirical results are suggested, as several studies from the scientific literature lend credence to contagious phenomena in sports. Causal inference from these results is difficult, but we suggest and discuss several latent variables that may contribute to the observed results, and offer possible directions for future research. PMID:23251507

  8. Hitting is contagious in baseball: evidence from long hitting streaks.

    PubMed

    Bock, Joel R; Maewal, Akhilesh; Gough, David A

    2012-01-01

    Data analysis is used to test the hypothesis that "hitting is contagious". A statistical model is described to study the effect of a hot hitter upon his teammates' batting during a consecutive game hitting streak. Box score data for entire seasons comprising [Formula: see text] streaks of length [Formula: see text] games, including a total [Formula: see text] observations were compiled. Treatment and control sample groups ([Formula: see text]) were constructed from core lineups of players on the streaking batter's team. The percentile method bootstrap was used to calculate [Formula: see text] confidence intervals for statistics representing differences in the mean distributions of two batting statistics between groups. Batters in the treatment group (hot streak active) showed statistically significant improvements in hitting performance, as compared against the control. Mean [Formula: see text] for the treatment group was found to be [Formula: see text] to [Formula: see text] percentage points higher during hot streaks (mean difference increased [Formula: see text] points), while the batting heat index [Formula: see text] introduced here was observed to increase by [Formula: see text] points. For each performance statistic, the null hypothesis was rejected at the [Formula: see text] significance level. We conclude that the evidence suggests the potential existence of a "statistical contagion effect". Psychological mechanisms essential to the empirical results are suggested, as several studies from the scientific literature lend credence to contagious phenomena in sports. Causal inference from these results is difficult, but we suggest and discuss several latent variables that may contribute to the observed results, and offer possible directions for future research.

  9. The Symptom and Genetic Diversity of Cassava Brown Streak Viruses Infecting Cassava in East Africa

    PubMed Central

    Mohammed, I. U.; Abarshi, M. M.; Muli, B.; Hillocks, R. J.; Maruthi, M. N.

    2012-01-01

    The genetic and symptom diversity of six virus isolates causing cassava brown streak disease (CBSD) in the endemic (Kenya, Mozambique, and Tanzania) and the recently affected epidemic areas (Uganda) of eastern Africa was studied. Five cassava varieties; Albert, Colombian, Ebwanateraka, TMS60444 (all susceptible) and Kiroba (tolerant) were graft inoculated with each isolate. Based on a number of parameters including the severity of leaf and root symptoms, and the extent of virus transmission by grafting, the viruses were classified as either severe or relatively mild. These results were further confirmed by the mechanical inoculation of 13 herbaceous hosts in which the virulent isolates caused plant death in Nicotiana clevelandii and N. benthamiana whereas the milder isolates did not. Phylogenetic analysis of complete coat protein gene sequences of these isolates together with sequences obtained from 14 other field-collected samples from Kenya and Zanzibar, and reference sequences grouped them into two distinct clusters, representing the two species of cassava brown streak viruses. Put together, these results did not suggest the association of a hypervirulent form of the virus with the current CBSD epidemic in Uganda. Identification of the severe and milder isolates, however, has further implications for disease management and quarantine requirements. PMID:22454639

  10. Ipomoviruses: Squash vein yellowing virus, Cucumber vein yellowing virus, Cassava brown streak virus, and Ugandan cassava brown streak virus

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Ipomoviruses including Squash vein yellowing virus, Cucumber vein yellowing virus and Cassava brown streak virus are currently causing significant economic impact on crop production in several regions of the world. Only recently have results of detailed characterization of their whitefly transmissi...

  11. Monitoring Nonadiabatic Electron-Nuclear Dynamics in Molecules by Attosecond Streaking of Photoelectrons

    NASA Astrophysics Data System (ADS)

    Kowalewski, Markus; Bennett, Kochise; Rouxel, Jérémy R.; Mukamel, Shaul

    2016-07-01

    Streaking of photoelectrons has long been used for the temporal characterization of attosecond extreme ultraviolet pulses. When the time-resolved photoelectrons originate from a coherent superposition of electronic states, they carry additional phase information, which can be retrieved by the streaking technique. In this contribution we extend the streaking formalism to include coupled electron and nuclear dynamics in molecules as well as initial coherences. We demonstrate how streaked photoelectrons offer a novel tool for monitoring nonadiabatic dynamics as it occurs in the vicinity of conical intersections and avoided crossings. Streaking can provide high time resolution direct signatures of electronic coherences, which affect many primary photochemical and biological events.

  12. Monitoring Nonadiabatic Electron-Nuclear Dynamics in Molecules by Attosecond Streaking of Photoelectrons.

    PubMed

    Kowalewski, Markus; Bennett, Kochise; Rouxel, Jérémy R; Mukamel, Shaul

    2016-07-22

    Streaking of photoelectrons has long been used for the temporal characterization of attosecond extreme ultraviolet pulses. When the time-resolved photoelectrons originate from a coherent superposition of electronic states, they carry additional phase information, which can be retrieved by the streaking technique. In this contribution we extend the streaking formalism to include coupled electron and nuclear dynamics in molecules as well as initial coherences. We demonstrate how streaked photoelectrons offer a novel tool for monitoring nonadiabatic dynamics as it occurs in the vicinity of conical intersections and avoided crossings. Streaking can provide high time resolution direct signatures of electronic coherences, which affect many primary photochemical and biological events. PMID:27494470

  13. Breeding for Improved Resistance to Fumonisin Contamination in Maize

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Maize grain infected by Fusarium verticillioides may contain the mycotoxin fumonisin, which is associated with livestock and human diseases. To reduce levels of fumonisin in grain, efforts are underway to identify sources of maize with increased resistance to fungal infection and fumonisin contamin...

  14. Megahertz streak-mode Fourier domain optical coherence tomography.

    PubMed

    Wang, Rui; Yun, Julie X; Yuan, Xiaocong; Goodwin, Richard; Markwald, Roger R; Gao, Bruce Z

    2011-06-01

    Here we present an ultrahigh-speed Fourier-domain optical coherence tomography (OCT) that records the OCT spectrum in streak mode with a high-speed area scan camera, which allows higher OCT imaging speed than can be achieved with a line-scan camera. Unlike parallel OCT techniques that also use area scan cameras, the conventional single-mode fiber-based point-scanning mechanism is retained to provide a confocal gate that rejects multiply scattered photons from the sample. When using a 1000 Hz resonant scanner as the streak scanner, 1,016,000 A-scans have been obtained in 1 s. This method's effectiveness has been demonstrated by recording in vivo OCT-image sequences of embryonic chick hearts at 1000 frames/s. In addition, 2-megahertz OCT data have been obtained with another high speed camera.

  15. Genetic variation of wheat streak mosaic virus in the United States Pacific Northwest.

    PubMed

    Robinson, Megan D; Murray, Timothy D

    2013-01-01

    Wheat streak mosaic virus (WSMV), the cause of wheat streak mosaic, is a widespread and damaging pathogen of wheat. WSMV is not a chronic problem of annual wheat in the United States Pacific Northwest but could negatively affect the establishment of perennial wheat, which is being developed as an alternative to annual wheat to prevent soil erosion. Fifty local isolates of WSMV were collected from 2008 to 2010 near Lewiston, ID, Pullman, WA, and the United States Department of Agriculture Central Ferry Research Station, near Pomeroy, WA to determine the amount of genetic variation present in the region. The coat protein gene from each isolate was sequenced and the data subjected to four different methods of phylogenetic analyses. Two well-supported clades of WSMV were identified. Isolates in clade I share sequence similarity with isolates from Central Europe; this is the first report of isolates from Central Europe being reported in the United States. Isolates in clade II are similar to isolates originating from Australia, Argentina, and the American Pacific Northwest. Nine isolates showed evidence of recombination and the same two well-supported clades were observed when recombinant isolates were omitted from the analysis. More polymorphic sites, parsimony informative sites, and increased diversity were observed in clade II than clade I, suggesting more recent establishment of the virus in the latter. The observed diversity within both clades could make breeding for durable disease resistance in perennial wheat difficult if there is a differential response of WSMV resistance genes to isolates from different clades.

  16. Fluid dynamical implications of anastomosing slope streaks on Mars

    NASA Astrophysics Data System (ADS)

    Miyamoto, Hideaki; Dohm, James M.; Beyer, Ross A.; Baker, Victor R.

    2004-06-01

    The Mars Global Surveyor mission has imaged slope streaks, some of which have formed in periods as short as 109 days. These features are one of the most currently active surface processes on Mars. Some slope streaks have flow-like morphologic characteristics, which include anastomosing patterns influenced by small topographic barriers. In order to understand what processes gave rise to these specific features, we applied viscoplastic flow numerical modeling techniques to simulated Martian surfaces. We simulate Martian surfaces with observed slope streaks by using Mars Orbiter Laser Altimeter measurements to obtain large-scale slope measurements and a photoclinometry technique on Mars Orbiter Camera images to obtain meter-scale topographic information. Our numerical simulations of slow-moving plastic flows show that a fluid rheology and a short formation period are necessary to explain these features. We estimate that the typical values of bulk viscosity and bulk yield strength are less than 10 Pa s and less than 10 Pa, respectively. The fluid rheology can be explained by a water-related flow with a solid content less than about 20%. An alternative explanation is a dry grain flow with extremely low cohesion and friction angle supported by dispersive pressure or a lubricant, such as electric conditions of particles. The continuous nature of anastomosing slope streaks that originate from point sources is best explained by continuous discharges of material or lubricant. In this case, the estimated flow rate is less than several cubic meters per second, and the flow duration is estimated to be less than a day.

  17. 9. VIEW OF 'BLUE STREAK' HAMMER MILL (Prater Pulverizer Co., ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    9. VIEW OF 'BLUE STREAK' HAMMER MILL (Prater Pulverizer Co., Chicago, Illinois), LOCATED IN THE SOUTHEAST CORNER OF THE BASEMENT, WAS ADDED IN THE EARLY 1930s. THIS WAS THE MILL'S FIRST ELECTRIC-POWERED MACHINERY. THE HAMMER MILL WAS USED TO PULVERIZE OATS, ALFALFA MEAL, AND CORN. Photographer: Louise Taft Cawood, July 1986 - Alexander's Grist Mill, Lock 37 on Ohio & Erie Canal, South of Cleveland, Valley View, Cuyahoga County, OH

  18. Design of microcontroller based system for automation of streak camera

    SciTech Connect

    Joshi, M. J.; Upadhyay, J.; Deshpande, P. P.; Sharma, M. L.; Navathe, C. P.

    2010-08-15

    A microcontroller based system has been developed for automation of the S-20 optical streak camera, which is used as a diagnostic tool to measure ultrafast light phenomenon. An 8 bit MCS family microcontroller is employed to generate all control signals for the streak camera. All biasing voltages required for various electrodes of the tubes are generated using dc-to-dc converters. A high voltage ramp signal is generated through a step generator unit followed by an integrator circuit and is applied to the camera's deflecting plates. The slope of the ramp can be changed by varying values of the capacitor and inductor. A programmable digital delay generator has been developed for synchronization of ramp signal with the optical signal. An independent hardwired interlock circuit has been developed for machine safety. A LABVIEW based graphical user interface has been developed which enables the user to program the settings of the camera and capture the image. The image is displayed with intensity profiles along horizontal and vertical axes. The streak camera was calibrated using nanosecond and femtosecond lasers.

  19. A new design of filter system in streak camera

    NASA Astrophysics Data System (ADS)

    Zhou, Pengyu; Bai, Yonglin

    2015-10-01

    In order to reduce the frequency of researchers routing in and out of the testing site and ensure the fluency of the testing we design a new filter system applied to the streak cameras. This system promotes streak cameras' abilities on spatial discrimination and time resolution. This paper focuses on the instruction of the piezoelectric motor's principle based on field-effect tubes. Filter wheel is driven by piezoelectric motor. It can effectively avoid the influences of high field produced by streak tube. Finally we achieve auto regulation at different gears and promote the efficiency of operations and guarantee the safety of researchers. CD4046 introduces the driven clock of this system and we use an inverter to get two synchronous inverted signals. These signals are amplified by field-effect tubes to more than 300V. The amplified ones are integrated at the output terminals to generate sinusoidal signal. The test shows that in this filter system piezoelectric motor operates at its resonance frequency under a control signal of 62.5 KHz. Its working current is 1.9A and driving power is almost 10W. By adjusting the gears, the filter wheel costs less than 2 seconds to calibrate. We accomplish the test in respected results.

  20. Resolution limitations and optimization of the LLNL streak camera focus

    SciTech Connect

    Lerche, R.A.; Griffith, R.L.

    1987-09-01

    The RCA C73435 image tube is biased at voltages far from its original design in the LLNL ultrafast (10 ps) streak camera. Its output resolution at streak camera operating potentials has been measured as a function of input slit width, incident-light wavelength, and focus-grid voltage. The temporal resolution is insensitive to focus-grid voltage for a narrow (100 ..mu..m) input slit, but is very sensitive to focus-grid voltage for a wide (2 mm) input slit. At the optimum wide-slit focus voltage, temporal resolution is insensitive to slit width. Spatial resolution is nearly independent of focus-grid voltage for values that give good temporal resolution. Both temporal and spatial resolution depend on the incident-light wavelength. Data for 1.06-..mu..m light show significantly better focusing than for 0.53-..mu..m light. Streak camera operation is simulated with a computer program that calculates photoelectron trajectories. Electron ray tracing describes all of the observed effects of slit width, incident-light wavelength, and focus-grid voltage on output resolution. 7 refs.

  1. Stabilization of boundary layer streaks by plasma actuators

    NASA Astrophysics Data System (ADS)

    Riherd, Mark; Roy, Subrata

    2014-03-01

    A flow's transition from laminar to turbulent leads to increased levels of skin friction. In recent years, dielectric barrier discharge actuators have been shown to be able to delay the onset of turbulence in boundary layers. While the laminar to turbulent transition process can be initiated by several different instability mechanisms, so far, only stabilization of the Tollmien-Schlichting path to transition has received significant attention, leaving the stabilization of other transition paths using these actuators less explored. To fill that void, a bi-global stability analysis is used here to examine the stabilization of boundary layer streaks in a laminar boundary layer. These streaks, which are important to both transient and by-pass instability mechanisms, are damped by the addition of a flow-wise oriented plasma body force to the boundary layer. Depending on the magnitude of the plasma actuation, this damping can be up to 25% of the perturbation's kinetic energy. The damping mechanism appears to be due to highly localized effects in the immediate vicinity of the body force, and when examined using a linearized Reynolds-averaged Navier-Stokes energy balance, indicate negative production of the perturbation's kinetic energy. Parametric studies of the stabilization have also been performed, varying the magnitude of the plasma actuator's body force and the spanwise wavenumber of the actuation. Based on these parametric studies, the damping of the boundary layer streaks appears to be linear with respect to the total amount of body force applied to the flow.

  2. Cellular Tracking and Gene Profiling of Fusarium graminearum during Maize Stalk Rot Disease Development Elucidates Its Strategies in Confronting Phosphorus Limitation in the Host Apoplast.

    PubMed

    Zhang, Yan; He, Juan; Jia, Lei-Jie; Yuan, Ting-Lu; Zhang, Dong; Guo, Yan; Wang, Yufeng; Tang, Wei-Hua

    2016-03-01

    The ascomycete fungus Fusarium graminearum causes stalk rot in maize. We tracked this pathogen's growth in wound-inoculated maize stalks using a fluorescence-labeled fungal isolate and observed that invasive hyphae grew intercellularly up to 24 h post inoculation, grew intra- and inter-cellularly between 36-48 h, and fully occupied invaded cells after 72 h. Using laser microdissection and microarray analysis, we profiled changes in global gene expression during pathogen growth inside pith tissues of maize stalk from 12 h to six days after inoculation and documented transcriptomic patterns that provide further insights into the infection process. Expression changes in transcripts encoding various plant cell wall degrading enzymes appeared to correlate with inter- and intracellular hyphal growth. Genes associated with 36 secondary metabolite biosynthesis clusters were expressed. Expression of several F. graminearum genes potentially involved in mobilization of the storage lipid triacylglycerol and phosphorus-free lipid biosynthesis were induced during early infection time points, and deletion of these genes caused reduction of virulence in maize stalk. Furthermore, we demonstrated that the F. graminearum betaine lipid synthase 1 (BTA1) gene was necessary and sufficient for production of phosphorus-free membrane lipids, and that deletion of BTA1 interfered with F. graminearum's ability to advance intercellularly. We conclude that F. graminearum produces phosphorus-free membrane lipids to adapt to a phosphate-limited extracellular microenvironment during early stages of its invasion of maize stalk. PMID:26974960

  3. Cellular Tracking and Gene Profiling of Fusarium graminearum during Maize Stalk Rot Disease Development Elucidates Its Strategies in Confronting Phosphorus Limitation in the Host Apoplast

    PubMed Central

    Jia, Lei-Jie; Yuan, Ting-Lu; Zhang, Dong; Guo, Yan; Wang, Yufeng; Tang, Wei-Hua

    2016-01-01

    The ascomycete fungus Fusarium graminearum causes stalk rot in maize. We tracked this pathogen’s growth in wound-inoculated maize stalks using a fluorescence-labeled fungal isolate and observed that invasive hyphae grew intercellularly up to 24 h post inoculation, grew intra- and inter-cellularly between 36–48 h, and fully occupied invaded cells after 72 h. Using laser microdissection and microarray analysis, we profiled changes in global gene expression during pathogen growth inside pith tissues of maize stalk from 12 h to six days after inoculation and documented transcriptomic patterns that provide further insights into the infection process. Expression changes in transcripts encoding various plant cell wall degrading enzymes appeared to correlate with inter- and intracellular hyphal growth. Genes associated with 36 secondary metabolite biosynthesis clusters were expressed. Expression of several F. graminearum genes potentially involved in mobilization of the storage lipid triacylglycerol and phosphorus-free lipid biosynthesis were induced during early infection time points, and deletion of these genes caused reduction of virulence in maize stalk. Furthermore, we demonstrated that the F. graminearum betaine lipid synthase 1 (BTA1) gene was necessary and sufficient for production of phosphorus-free membrane lipids, and that deletion of BTA1 interfered with F. graminearum’s ability to advance intercellularly. We conclude that F. graminearum produces phosphorus-free membrane lipids to adapt to a phosphate-limited extracellular microenvironment during early stages of its invasion of maize stalk. PMID:26974960

  4. Cellular Tracking and Gene Profiling of Fusarium graminearum during Maize Stalk Rot Disease Development Elucidates Its Strategies in Confronting Phosphorus Limitation in the Host Apoplast.

    PubMed

    Zhang, Yan; He, Juan; Jia, Lei-Jie; Yuan, Ting-Lu; Zhang, Dong; Guo, Yan; Wang, Yufeng; Tang, Wei-Hua

    2016-03-01

    The ascomycete fungus Fusarium graminearum causes stalk rot in maize. We tracked this pathogen's growth in wound-inoculated maize stalks using a fluorescence-labeled fungal isolate and observed that invasive hyphae grew intercellularly up to 24 h post inoculation, grew intra- and inter-cellularly between 36-48 h, and fully occupied invaded cells after 72 h. Using laser microdissection and microarray analysis, we profiled changes in global gene expression during pathogen growth inside pith tissues of maize stalk from 12 h to six days after inoculation and documented transcriptomic patterns that provide further insights into the infection process. Expression changes in transcripts encoding various plant cell wall degrading enzymes appeared to correlate with inter- and intracellular hyphal growth. Genes associated with 36 secondary metabolite biosynthesis clusters were expressed. Expression of several F. graminearum genes potentially involved in mobilization of the storage lipid triacylglycerol and phosphorus-free lipid biosynthesis were induced during early infection time points, and deletion of these genes caused reduction of virulence in maize stalk. Furthermore, we demonstrated that the F. graminearum betaine lipid synthase 1 (BTA1) gene was necessary and sufficient for production of phosphorus-free membrane lipids, and that deletion of BTA1 interfered with F. graminearum's ability to advance intercellularly. We conclude that F. graminearum produces phosphorus-free membrane lipids to adapt to a phosphate-limited extracellular microenvironment during early stages of its invasion of maize stalk.

  5. Insights into the structure-function relationship of disease resistance protein HCTR in maize (Zea mays L.): a computational structural biology approach.

    PubMed

    Dehury, Budheswar; Sahu, Mousumi; Patra, Mahesh Chandra; Sarma, Kishore; Sahu, Jagajjit; Sen, Priyabrata; Modi, Mahendra Kumar; Choudhury, Manabendra Dutta; Barooah, Madhumita

    2013-09-01

    The disease resistance gene Hm1 of maize encodes a NADPH-dependent reductase enzyme, HC-toxin reductase (HCTR) that detoxifies the HC toxin secreted by the race specific fungus Cochliobolus carbonum race 1. HCTR enzyme shares 29.6% sequence identity with dihydroflavonol reductase (DFR) of grape, a key enzyme involved in flavonoid biosynthesis. Here we report the comparative modelling, molecular dynamics simulation and docking studies to explain the structure-function relationship and the mode of cofactor (NADPH) binding in HCTR enzyme at the molecular level. The nucleotide binding domain of modelled HCTR adopts a classic Rossmann fold and possesses a consensus glycine rich GxGxxG motif. Molecular simulation studies suggested that HCTR model retained stability throughout the simulation in aqueous solution. HCTR model showed considerable structural identities with the cofactor binding site of DFR, but significant difference in the catalytic site might be the reason of functional divergence between these families of proteins. Similarly electrostatic surface potential analysis of both HCTR and DFR revealed profound variations in the charge distribution over the substrate binding site, which can be correlated with the sequence variability and may suggest distinct substrate-binding patterns and differences in the catalytic mechanism. Docking results indicated Phe19, Gly21, Arg40, Thr90, Gly208, Arg218, Glu221 and Thr222 are important residues for cofactor (NADPH) binding through strong hydrogen bonding and electrostatic interactions. Alanine scanning and analysis of docking energies of mutant proteins suggested that Phe19, and Arg40 are two critical residues for the cofactor binding. The result from the present study is expected to pave the way for exploration of similar genes in other economically important crop varieties. PMID:24004829

  6. MaizeGDB, the maize model organism database

    Technology Transfer Automated Retrieval System (TEKTRAN)

    MaizeGDB is the maize research community's database for maize genetic and genomic information. In this seminar I will outline our current endeavors including a full website redesign, the status of maize genome assembly and annotation projects, and work toward genome functional annotation. Mechanis...

  7. Maize Genetic Resources

    Technology Transfer Automated Retrieval System (TEKTRAN)

    This chapter describes the resources held at the Maize Genetics Cooperation • Stock Center in detail and also provides some information about the North Central Regional Plant Introduction Station (NCRPIS) in Ames, IA, Centro Internacional de Mejoramiento de Maiz y Trigo (CIMMYT) in Mexico, and the N...

  8. MAIZE ALLELIC DIVERSITY PROJECT

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Of the estimated 250-300 races of maize, only 24 races are represented in materials utilized by the Germplasm Enhancement of Maize (GEM) project, a collaborative effort between USDA-ARS and public and private sector research scientists. This is largely a result of poor performance of many races in ...

  9. Defrosting Polar Dunes--Dark Spots and Wind Streaks

    NASA Technical Reports Server (NTRS)

    1999-01-01

    The first time that the Mars Global Surveyor (MGS) Mars Orbiter Camera (MOC)team saw dark spots on defrosting dune surfaces was in August and September of 1998. At that time, it was the north polar seasonal frost cap that was subliming away (more recent images from 1999 have shown the south polar frosts). This picture (above) shows a small portion of the giant dune field that surrounds the north polar region, as it appeared on August 23, 1998. At the time, it was early northern spring and the dunes were still covered with winter frost.

    Dark spots had appeared on the north polar dunes, and many of them exhibited a radial or semi-radial pattern of dark streaks and streamers. At first, there was speculation that the streaks indicated that the defrosting process might somehow involve explosions! The dark spots seemed to resemble small craters with dark, radial ejecta. It seemed possible that frozen carbon dioxide trapped beneath water ice might somehow heat up, turn to gas, expand, and then 'explode' in either a small blast or at least a 'puff' of air similar to that which comes from the blowhole of a surfacing whale or seal.

    The image shown here changed the earlier impression. The dark spots and streaks do not result from explosions. The spots--though not well understood--represent the earliest stages of defrosting on the sand dunes. The streaks, instead of being caused by small explosions, are instead the result of wind. In this picture, the fine, dark streaks show essentially identical orientations from spot to spot (e.g., compare the spots seen in boxes (a) and (b)). Each ray of dark material must result from wind blowing from a particular direction--for example, all of the spots in this picture exhibit a ray that points toward the upper left corner of the image, and each of these rays indicates the same wind regime. Each spot also has a ray pointing toward the lower right and top/upper-right. These, too, must indicate periods when the wind was strong

  10. Maize Lethal Necrosis (MLN), an Emerging Threat to Maize-Based Food Security in Sub-Saharan Africa.

    PubMed

    Mahuku, George; Lockhart, Benham E; Wanjala, Bramwel; Jones, Mark W; Kimunye, Janet Njeri; Stewart, Lucy R; Cassone, Bryan J; Sevgan, Subramanian; Nyasani, Johnson O; Kusia, Elizabeth; Kumar, P Lava; Niblett, C L; Kiggundu, Andrew; Asea, Godfrey; Pappu, Hanu R; Wangai, Anne; Prasanna, Boddupalli M; Redinbaugh, Margaret G

    2015-07-01

    In sub-Saharan Africa, maize is a staple food and key determinant of food security for smallholder farming communities. Pest and disease outbreaks are key constraints to maize productivity. In September 2011, a serious disease outbreak, later diagnosed as maize lethal necrosis (MLN), was reported on maize in Kenya. The disease has since been confirmed in Rwanda and the Democratic Republic of Congo, and similar symptoms have been reported in Tanzania, Uganda, South Sudan, and Ethiopia. In 2012, yield losses of up to 90% resulted in an estimated grain loss of 126,000 metric tons valued at $52 million in Kenya alone. In eastern Africa, MLN was found to result from coinfection of maize with Maize chlorotic mottle virus (MCMV) and Sugarcane mosaic virus (SCMV), although MCMV alone appears to cause significant crop losses. We summarize here the results of collaborative research undertaken to understand the biology and epidemiology of MLN in East Africa and to develop disease management strategies, including identification of MLN-tolerant maize germplasm. We discuss recent progress, identify major issues requiring further research, and discuss the possible next steps for effective management of MLN.

  11. Viruses in maize and Johnsongrass in southern Ohio.

    PubMed

    Stewart, L R; Teplier, R; Todd, J C; Jones, M W; Cassone, B J; Wijeratne, S; Wijeratne, A; Redinbaugh, M G

    2014-12-01

    The two major U.S. maize viruses, Maize dwarf mosaic virus (MDMV) and Maize chlorotic dwarf virus (MCDV), emerged in southern Ohio and surrounding regions in the 1960s and caused significant losses. Planting resistant varieties and changing cultural practices has dramatically reduced virus impact in subsequent decades. Current information on the distribution, diversity, and impact of known and potential U.S. maize disease-causing viruses is lacking. To assess the current reservoir of viruses present at the sites of past disease emergence, we used a combination of serological testing and next-generation RNA sequencing approaches. Here, we report enzyme-linked immunosorbent assay and RNA-Seq data from samples collected over 2 years to assess the presence of viruses in cultivated maize and an important weedy reservoir, Johnsongrass (Sorghum halepense). Results revealed a persistent reservoir of MDMV and two strains of MCDV in Ohio Johnsongrass. We identified sequences of several other grass-infecting viruses and confirmed the presence of Wheat mosaic virus in Ohio maize. Together, these results provide important data for managing virus disease in field corn and sweet corn maize crops, and identifying potential future virus threats.

  12. Bacterial endophytes from wild maize suppress Fusarium graminearum in modern maize and inhibit mycotoxin accumulation

    PubMed Central

    Mousa, Walaa K.; Shearer, Charles R.; Limay-Rios, Victor; Zhou, Ting; Raizada, Manish N.

    2015-01-01

    Wild maize (teosinte) has been reported to be less susceptible to pests than their modern maize (corn) relatives. Endophytes, defined as microbes that inhabit plants without causing disease, are known for their ability to antagonize plant pests and pathogens. We hypothesized that the wild relatives of modern maize may host endophytes that combat pathogens. Fusarium graminearum is the fungus that causes Gibberella Ear Rot (GER) in modern maize and produces the mycotoxin, deoxynivalenol (DON). In this study, 215 bacterial endophytes, previously isolated from diverse maize genotypes including wild teosintes, traditional landraces and modern varieties, were tested for their ability to antagonize F. graminearum in vitro. Candidate endophytes were then tested for their ability to suppress GER in modern maize in independent greenhouse trials. The results revealed that three candidate endophytes derived from wild teosintes were most potent in suppressing F. graminearum in vitro and GER in a modern maize hybrid. These wild teosinte endophytes could suppress a broad spectrum of fungal pathogens of modern crops in vitro. The teosinte endophytes also suppressed DON mycotoxin during storage to below acceptable safety threshold levels. A fourth, less robust anti-fungal strain was isolated from a modern maize hybrid. Three of the anti-fungal endophytes were predicted to be Paenibacillus polymyxa, along with one strain of Citrobacter. Microscopy studies suggested a fungicidal mode of action by all four strains. Molecular and biochemical studies showed that the P. polymyxa strains produced the previously characterized anti-Fusarium compound, fusaricidin. Our results suggest that the wild relatives of modern crops may serve as a valuable reservoir for endophytes in the ongoing fight against serious threats to modern agriculture. We discuss the possible impact of crop evolution and domestication on endophytes in the context of plant defense. PMID:26500660

  13. Microprocessor-controlled, wide-range streak camera

    SciTech Connect

    Amy E. Lewis, Craig Hollabaugh

    2006-09-01

    Bechtel Nevada/NSTec recently announced deployment of their fifth generation streak camera. This camera incorporates many advanced features beyond those currently available for streak cameras. The arc-resistant driver includes a trigger lockout mechanism, actively monitors input trigger levels, and incorporates a high-voltage fault interrupter for user safety and tube protection. The camera is completely modular and may deflect over a variable full-sweep time of 15 nanoseconds to 500 microseconds. The camera design is compatible with both large- and small-format commercial tubes from several vendors. The embedded microprocessor offers Ethernet connectivity, and XML [extensible markup language]-based configuration management with non-volatile parameter storage using flash-based storage media. The camera’s user interface is platform-independent (Microsoft Windows, Unix, Linux, Macintosh OSX) and is accessible using an AJAX [asynchronous Javascript and XML]-equipped modem browser, such as Internet Explorer 6, Firefox, or Safari. User interface operation requires no installation of client software or browser plug-in technology. Automation software can also access the camera configuration and control using HTTP [hypertext transfer protocol]. The software architecture supports multiple-simultaneous clients, multiple cameras, and multiple module access with a standard browser. The entire user interface can be customized.

  14. Range accuracy analysis of streak tube imaging lidar systems

    NASA Astrophysics Data System (ADS)

    Ye, Guangchao; Fan, Rongwei; Chen, Zhaodong; Yuan, Wei; Chen, Deying; He, Ping

    2016-02-01

    Streak tube imaging lidar (STIL) is an active imaging system that has a high range accuracy and a wide range gate with the use of a pulsed laser transmitter and streak tube receiver to produce 3D range images. This work investigates the range accuracy performance of STIL systems based on a peak detection algorithm, taking into account the effects of blurring of the image. A theoretical model of the time-resolved signal distribution, including the static blurring width in addition to the laser pulse width, is presented, resulting in a modified range accuracy analysis. The model indicates that the static blurring width has a significant effect on the range accuracy, which is validated by both the simulation and experimental results. By using the optimal static blurring width, the range accuracies are enhanced in both indoor and outdoor experiments, with a stand-off distance of 10 m and 1700 m, respectively, and corresponding, best range errors of 0.06 m and 0.25 m were achieved in a daylight environment.

  15. Microprocessor-controlled wide-range streak camera

    NASA Astrophysics Data System (ADS)

    Lewis, Amy E.; Hollabaugh, Craig

    2006-08-01

    Bechtel Nevada/NSTec recently announced deployment of their fifth generation streak camera. This camera incorporates many advanced features beyond those currently available for streak cameras. The arc-resistant driver includes a trigger lockout mechanism, actively monitors input trigger levels, and incorporates a high-voltage fault interrupter for user safety and tube protection. The camera is completely modular and may deflect over a variable full-sweep time of 15 nanoseconds to 500 microseconds. The camera design is compatible with both large- and small-format commercial tubes from several vendors. The embedded microprocessor offers Ethernet connectivity, and XML [extensible markup language]-based configuration management with non-volatile parameter storage using flash-based storage media. The camera's user interface is platform-independent (Microsoft Windows, Unix, Linux, Macintosh OSX) and is accessible using an AJAX [asynchronous Javascript and XML]-equipped modem browser, such as Internet Explorer 6, Firefox, or Safari. User interface operation requires no installation of client software or browser plug-in technology. Automation software can also access the camera configuration and control using HTTP [hypertext transfer protocol]. The software architecture supports multiple-simultaneous clients, multiple cameras, and multiple module access with a standard browser. The entire user interface can be customized.

  16. Interactions between performance pressure, performance streaks, and attentional focus.

    PubMed

    Gray, Rob; Allsop, Jonathan

    2013-08-01

    How is performance under pressure influenced by the history of events that precede it, and how does the pressure outcome influence the series of events that follow? A baseball batting simulation was used with college players to investigate these questions. In Experiment 1, the difficulty of the simulation was first adaptively adjusted to equate performance level. Batters next completed 20 at-bats used to classify them into one of three performance groups (normal, cold streak, or hot streak) followed by a one at-bat pressure condition. Finally, performance was evaluated over a period of 20 postpressure at-bats. In Experiment 2, a series of secondary tasks were added to assess attentional focus. In both experiments, whether batters succeeded or failed under pressure was significantly related to their performance history immediately before the pressure event, with the normal group having the poorest pressure performance. Performance postpressure was significantly related to both the pressure outcome and prepressure performance. These performance effects were related to changes in the batter's attentional focus as shown by changes in secondary task accuracy.

  17. Interactions between performance pressure, performance streaks, and attentional focus.

    PubMed

    Gray, Rob; Allsop, Jonathan

    2013-08-01

    How is performance under pressure influenced by the history of events that precede it, and how does the pressure outcome influence the series of events that follow? A baseball batting simulation was used with college players to investigate these questions. In Experiment 1, the difficulty of the simulation was first adaptively adjusted to equate performance level. Batters next completed 20 at-bats used to classify them into one of three performance groups (normal, cold streak, or hot streak) followed by a one at-bat pressure condition. Finally, performance was evaluated over a period of 20 postpressure at-bats. In Experiment 2, a series of secondary tasks were added to assess attentional focus. In both experiments, whether batters succeeded or failed under pressure was significantly related to their performance history immediately before the pressure event, with the normal group having the poorest pressure performance. Performance postpressure was significantly related to both the pressure outcome and prepressure performance. These performance effects were related to changes in the batter's attentional focus as shown by changes in secondary task accuracy. PMID:23966447

  18. Wigner-Smith time delay and its application to attosecond streaking

    NASA Astrophysics Data System (ADS)

    Goldsmith, Cory; Su, Jing; Becker, Andreas; Jaron-Becker, Agnieszka

    2015-05-01

    Attosecond streaking experiments have been suggested as a means for observing temporal delays in photoemission, but the interpretation of the time delays observed in such experiments is still debated. Using a calculation of the streaking delays as a field-weighted sum over finite-range delays accumulated over the duration of the streaking pulse length, we provide further analysis into the role the Coulomb potential plays in the observed, so-called ``streaking delay.'' To this end, we make use of cut-off Coulomb and single active electron (SAE) potentials to calculate field-free Wigner-Smith-like time delays accumulated over small intervals of time to formulate an analytical model for the calculation of the streaking delays for hydrogenic atoms, as well as for SAE model potentials for noble gases. Our results indicate that in most cases, the influence of the streaking field on the short-range parts of the potential is a small effect. This allows for the representation of the streaking delay as the sum of the Wigner-Smith (WS) delay from scattering theory and the coupling between the streaking and Coulomb fields. We acknowledge the following support: C.G., J.S., and A.B: U.S. DOE, Division of Chemical Sciences, Atomic, Molecular and Optical Sciences Program (Award No. DE-FG02-09ER16103), A.J.-B.: U.S. NSF (Grants No. PHY-1125844 and No. PHY-1068706).

  19. X-ray streak camera diagnostics of picosecond laser-plasma interactions

    SciTech Connect

    Cobble, J.A.; Fulton, R.D.; Jones, L.A.; Kyrala, G.A.; Schappert, G.T.; Taylor, A.J.; Wahlin, E.K.

    1992-01-01

    An x-ray streak camera is used to diagnose a laser-produced Al plasma with time resolution of {approximately}10 ps. A streak record of filtered emission and a time-integrated transmission grating spectrum reveal that the plasma radiation is dominated by emission from He- and H-like resonance lines. 11 refs.

  20. X-ray streak camera diagnostics of picosecond laser-plasma interactions

    SciTech Connect

    Cobble, J.A.; Fulton, R.D.; Jones, L.A.; Kyrala, G.A.; Schappert, G.T.; Taylor, A.J.; Wahlin, E.K.

    1992-05-01

    An x-ray streak camera is used to diagnose a laser-produced Al plasma with time resolution of {approximately}10 ps. A streak record of filtered emission and a time-integrated transmission grating spectrum reveal that the plasma radiation is dominated by emission from He- and H-like resonance lines. 11 refs.

  1. Response of maize (Zea mays L.) lines carrying Wsm1, Wsm2 and Wsm3 to the potyviruses Johnsongrass mosaic virus and Sorghum mosaic virus

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Maize dwarf mosaic disease is one of the most important viral diseases of maize throughout the world. It is caused by a set of related viruses in the family Potyviridae, genus Potyvirus, including Maize dwarf mosaic virus (MDMV), Sugarcane mosaic virus (SCMV), Johnsongrass mosaic virus (JGMV), and S...

  2. Satellite Observations of Plume-like Streaks in a Cloud Field in Canada

    NASA Astrophysics Data System (ADS)

    Grasso, Lewis; Lindsey, Daniel T.; Seaman, Curtis J.; Stocks, Brian; Rabin, Robert M.

    2016-09-01

    On the afternoon of 28 October 2013, plume-like streaks were detected by geostationary and polar orbiting satellites over eastern Ontario, Canada. These streaks were characterized by enhanced reflectivity in the visible bands and warmer brightness temperatures at 3.9 µm. These streaks were part of a low-level liquid water cloud layer. Due to the similarity of the streaks to plume-like features in marine stratocumulus caused by smoke from the stacks of ships, so-called ship tracks, a local source of emitted aerosols was suspected and subsequently identified as the burning of logging residue. This event provides further support for the ability of locally enhanced aerosol loading to alter microphysical characteristics of clouds. Ship tracks, pollution plumes from industrial burning, and pyro-cumulus are known examples of this type of interaction. In addition, the plume-like streaks could be used indirectly to identify the location of the source of the emitted particles.

  3. Satellite Observations of Plume-like Streaks in a Cloud Field in Canada

    NASA Astrophysics Data System (ADS)

    Grasso, Lewis; Lindsey, Daniel T.; Seaman, Curtis J.; Stocks, Brian; Rabin, Robert M.

    2015-04-01

    On the afternoon of 28 October 2013, plume-like streaks were detected by geostationary and polar orbiting satellites over eastern Ontario, Canada. These streaks were characterized by enhanced reflectivity in the visible bands and warmer brightness temperatures at 3.9 µm. These streaks were part of a low-level liquid water cloud layer. Due to the similarity of the streaks to plume-like features in marine stratocumulus caused by smoke from the stacks of ships, so-called ship tracks, a local source of emitted aerosols was suspected and subsequently identified as the burning of logging residue. This event provides further support for the ability of locally enhanced aerosol loading to alter microphysical characteristics of clouds. Ship tracks, pollution plumes from industrial burning, and pyro-cumulus are known examples of this type of interaction. In addition, the plume-like streaks could be used indirectly to identify the location of the source of the emitted particles.

  4. The enigmatic primitive streak: prevailing notions and challenges concerning the body axis of mammals

    PubMed Central

    Downs, Karen M.

    2010-01-01

    The primitive streak establishes the antero-posterior body axis in all amniote species. It is thought to be the conduit through which mesoderm and endoderm progenitors ingress and migrate to their ultimate destinations. Despite its importance, the streak remains poorly defined and one of the most enigmatic structures of the animal kingdom. In particular, the posterior end of the primitive streak has not been satisfactorily identified in any species. Unexpectedly, and contrary to prevailing notions, recent evidence suggests that the murine posterior primitive streak extends beyond the embryo proper. In its extraembryonic site, the streak creates a node-like cell reservoir from which the allantois, a universal caudal appendage of all amniotes and the future umbilical cord of placental mammals, emerges. This new insight into the fetal/umbilical relationship may explain the etiology of a large number of umbilical-associated birth defects, many of which are correlated with abnormalities of the embryonic midline. PMID:19609969

  5. Betting Decision Under Break-Streak Pattern: Evidence from Casino Gaming.

    PubMed

    Fong, Lawrence Hoc Nang; So, Amy Siu Ian; Law, Rob

    2016-03-01

    Cognitive bias is prevalent among gamblers, especially those with gambling problems. Grounded in the heuristics theories, this study contributes to the literature by examining a cognitive bias triggered by the break streak pattern in the casino setting. We postulate that gamblers tend to bet on the latest outcome when there is a break-streak pattern. Moreover, three determinants of the betting decision under break-streak pattern, including the streak length of the alternative outcome, the frequency of the latest outcome, and gender, were identified and examined in this study. A non-participatory observational study was conducted among the Cussec gamblers in a casino in Macao. An analysis of 1229 bets confirms our postulation, particularly when the streak of the alternative outcome is long, the latest outcome is frequent, and the gamblers are females. The findings provide meaningful implications for casino management and public policymakers regarding the minimization of gambling harm. PMID:25967106

  6. Sub-picosecond streak camera measurements at LLNL: From IR to x-rays

    SciTech Connect

    Kuba, J; Shepherd, R; Booth, R; Steward, R; Lee, E W; Cross, R R; Springer, P T

    2003-12-21

    An ultra fast, sub-picosecond resolution streak camera has been recently developed at the LLNL. The camera is a versatile instrument with a wide operating wavelength range. The temporal resolution of up to 300 fs can be achieved, with routine operation at 500 fs. The streak camera has been operated in a wide wavelength range from IR to x-rays up to 2 keV. In this paper we briefly review the main design features that result in the unique properties of the streak camera and present its several scientific applications: (1) Streak camera characterization using a Michelson interferometer in visible range, (2) temporally resolved study of a transient x-ray laser at 14.7 nm, which enabled us to vary the x-ray laser pulse duration from {approx}2-6 ps by changing the pump laser parameters, and (3) an example of a time-resolved spectroscopy experiment with the streak camera.

  7. Betting Decision Under Break-Streak Pattern: Evidence from Casino Gaming.

    PubMed

    Fong, Lawrence Hoc Nang; So, Amy Siu Ian; Law, Rob

    2016-03-01

    Cognitive bias is prevalent among gamblers, especially those with gambling problems. Grounded in the heuristics theories, this study contributes to the literature by examining a cognitive bias triggered by the break streak pattern in the casino setting. We postulate that gamblers tend to bet on the latest outcome when there is a break-streak pattern. Moreover, three determinants of the betting decision under break-streak pattern, including the streak length of the alternative outcome, the frequency of the latest outcome, and gender, were identified and examined in this study. A non-participatory observational study was conducted among the Cussec gamblers in a casino in Macao. An analysis of 1229 bets confirms our postulation, particularly when the streak of the alternative outcome is long, the latest outcome is frequent, and the gamblers are females. The findings provide meaningful implications for casino management and public policymakers regarding the minimization of gambling harm.

  8. Maize (Zea mays L.).

    PubMed

    Frame, Bronwyn; Warnberg, Katey; Main, Marcy; Wang, Kan

    2015-01-01

    Agrobacterium tumefaciens-mediated transformation is an effective method for introducing genes into maize. In this chapter, we describe a detailed protocol for genetic transformation of the maize genotype Hi II. Our starting plant material is immature embryos cocultivated with an Agrobacterium strain carrying a standard binary vector. In addition to step-by-step laboratory transformation procedures, we include extensive details in growing donor plants and caring for transgenic plants in the greenhouse.

  9. Global Maize Trade and Food Security: Implications from a Social Network Model

    PubMed Central

    Wu, Felicia; Guclu, Hasan

    2013-01-01

    In this study, we developed a social network model of the global trade of maize: one of the most important food, feed, and industrial crops worldwide, and critical to food security. We used this model to analyze patterns of maize trade among nations, and to determine where vulnerabilities in food security might arise if maize availability were decreased due to factors such as diversion to non-food uses, climatic factors, or plant diseases. Using data on imports and exports from the United Nations Commodity Trade Statistics Database for each year from 2000 to 2009 inclusive, we summarized statistics on volumes of maize trade between pairs of nations for 217 nations. There is evidence of market segregation among clusters of nations; with three prominent clusters representing Europe, Brazil and Argentina, and the United States. The United States is by far the largest exporter of maize worldwide, while Japan and the Republic of Korea are the largest maize importers. In particular, the star-shaped cluster of the network that represents US maize trade to other nations indicates the potential for food security risks because of the lack of trade these other nations conduct with other maize exporters. If a scenario arose in which US maize could not be exported in as large quantities, maize supplies in many nations could be jeopardized. We discuss this in the context of recent maize ethanol production and its attendant impacts on food prices elsewhere worldwide. PMID:23656551

  10. Global maize trade and food security: implications from a social network model.

    PubMed

    Wu, Felicia; Guclu, Hasan

    2013-12-01

    In this study, we developed a social network model of the global trade of maize: one of the most important food, feed, and industrial crops worldwide, and critical to food security. We used this model to analyze patterns of maize trade among nations, and to determine where vulnerabilities in food security might arise if maize availability was decreased due to factors such as diversion to nonfood uses, climatic factors, or plant diseases. Using data on imports and exports from the U.N. Commodity Trade Statistics Database for each year from 2000 to 2009 inclusive, we summarized statistics on volumes of maize trade between pairs of nations for 217 nations. There is evidence of market segregation among clusters of nations; with three prominent clusters representing Europe, Brazil and Argentina, and the United States. The United States is by far the largest exporter of maize worldwide, whereas Japan and the Republic of Korea are the largest maize importers. In particular, the star-shaped cluster of the network that represents U.S. maize trade to other nations indicates the potential for food security risks because of the lack of trade these other nations conduct with other maize exporters. If a scenario arose in which U.S. maize could not be exported in as large quantities, maize supplies in many nations could be jeopardized. We discuss this in the context of recent maize ethanol production and its attendant impacts on food prices elsewhere worldwide.

  11. Global maize trade and food security: implications from a social network model.

    PubMed

    Wu, Felicia; Guclu, Hasan

    2013-12-01

    In this study, we developed a social network model of the global trade of maize: one of the most important food, feed, and industrial crops worldwide, and critical to food security. We used this model to analyze patterns of maize trade among nations, and to determine where vulnerabilities in food security might arise if maize availability was decreased due to factors such as diversion to nonfood uses, climatic factors, or plant diseases. Using data on imports and exports from the U.N. Commodity Trade Statistics Database for each year from 2000 to 2009 inclusive, we summarized statistics on volumes of maize trade between pairs of nations for 217 nations. There is evidence of market segregation among clusters of nations; with three prominent clusters representing Europe, Brazil and Argentina, and the United States. The United States is by far the largest exporter of maize worldwide, whereas Japan and the Republic of Korea are the largest maize importers. In particular, the star-shaped cluster of the network that represents U.S. maize trade to other nations indicates the potential for food security risks because of the lack of trade these other nations conduct with other maize exporters. If a scenario arose in which U.S. maize could not be exported in as large quantities, maize supplies in many nations could be jeopardized. We discuss this in the context of recent maize ethanol production and its attendant impacts on food prices elsewhere worldwide. PMID:23656551

  12. Steering continuum electron dynamics by low-energy attosecond streaking

    NASA Astrophysics Data System (ADS)

    Geng, Ji-Wei; Xiong, Wei-Hao; Xiao, Xiang-Ru; Gong, Qihuang; Peng, Liang-You

    2016-08-01

    A semiclassical model is developed to understand the electronic dynamics in the low-energy attosecond streaking. Under a relatively strong infrared (IR) pulse, the low-energy part of photoelectrons initialized by a single attosecond pulse (SAP) can either rescatter with the ionic core and induce interferences structures in the momentum spectra of the ionized electrons or be recaptured into the Rydberg states. The Coulomb potential plays essential roles in both the electron rescattering and recapturing processes. We find that by changing the time delay between the SAP and the IR pulse, the photoelectrons yield or the population of the Rydberg states can be effectively controlled. The present study demonstrates a fascinating way to steer the electron motion in the continuum.

  13. Particle streak velocimetry and its application to impinging laminar jets

    NASA Astrophysics Data System (ADS)

    Bergthorson, Jeff; Dimotakis, Paul

    2002-11-01

    The technique of Particle Streak Velocimetry (PSV) was improved to include digital imaging and image processing, allowing it to compete with PIV or LDV in terms of accuracy and ease of implementation. PSV provides advantages over other techniques, such as low particle mass loading, short run time experiments, and high accuracy velocity data through the direct measurement of Lagrangian trajectories. PSV, coupled with measurements of the static (Bernoulli) pressure drop across a well designed nozzle contraction, provided redundancy in the measurement of the axisymmetric impinging laminar jet. The impinging laminar jet was studied in the intermediate regime where the existence of a stagnation plate will affect the flow out of the nozzle. This nozzle separation to diameter ratio, L/d_j, regime has not been well characterized. The results indicate that a one-dimensional streamfunction formulation is not sufficient to characterize this flow.

  14. Interference effects in angular streaking with a rotating terahertz field

    NASA Astrophysics Data System (ADS)

    Kazansky, A. K.; Bozhevolnov, A. V.; Sazhina, I. P.; Kabachnik, N. M.

    2016-01-01

    A method of angular streaking with a rotating terahertz electric field for photoelectrons produced by femtosecond extreme ultraviolet pulses is suggested and theoretically analyzed. The method can be used for free electron laser (FEL) pulse characterization on a shot-to-shot basis. It is shown that in related measurements an interesting phenomenon appears: formation of very bright and sharp features in the angular resolved electron spectra measured in the plane perpendicular to the collinear beam direction. These features are similar to the conventional caustics in the wave propagation. The caustics are accompanied by a well-developed interference structure. The intensity distribution along the caustic is determined by the envelope of the FEL pulse.

  15. StreakDet data processing and analysis pipeline for space debris optical observations

    NASA Astrophysics Data System (ADS)

    Virtanen, Jenni; Flohrer, Tim; Muinonen, Karri; Granvik, Mikael; Torppa, Johanna; Poikonen, Jonne; Lehti, Jussi; Santti, Tero; Komulainen, Tuomo; Naranen, Jyri

    We describe a novel data processing and analysis pipeline for optical observations of space debris. The monitoring of space object populations requires reliable acquisition of observational data, to support the development and validation of space debris environment models, the build-up and maintenance of a catalogue of orbital elements. In addition, data is needed for the assessment of conjunction events and for the support of contingency situations or launches. The currently available, mature image processing algorithms for detection and astrometric reduction of optical data cover objects that cross the sensor field-of-view comparably slowly, and within a rather narrow, predefined range of angular velocities. By applying specific tracking techniques, the objects appear point-like or as short trails in the exposures. However, the general survey scenario is always a “track before detect” problem, resulting in streaks, i.e., object trails of arbitrary lengths, in the images. The scope of the ESA-funded StreakDet (Streak detection and astrometric reduction) project is to investigate solutions for detecting and reducing streaks from optical images, particularly in the low signal-to-noise ratio (SNR) domain, where algorithms are not readily available yet. For long streaks, the challenge is to extract precise position information and related registered epochs with sufficient precision. Although some considerations for low-SNR processing of streak-like features are available in the current image processing and computer vision literature, there is a need to discuss and compare these approaches for space debris analysis, in order to develop and evaluate prototype implementations. In the StreakDet project, we develop algorithms applicable to single images (as compared to consecutive frames of the same field) obtained with any observing scenario, including space-based surveys and both low- and high-altitude populations. The proposed processing pipeline starts from the

  16. Illusory Streaks from Corners and Their Perceptual Integration

    PubMed Central

    Roncato, Sergio; Guidi, Stefano; Parlangeli, Oronzo; Battaglini, Luca

    2016-01-01

    Perceptual grouping appears both as organized forms of real figural units and as illusory or “phantom” figures. The phenomenon is visible in the Hermann grid and in configurations which generate color spreading, e.g., “neon effects.” These configurations, generally regular repetitive patterns, appear to be crossed by illusory bands filled with a brighter shade or a colored tinge connecting the various loci of illusory effects. In this work, we explore a particular new illusion showing a grouping effect. It manifests as illusory streaks irradiating from the vertexes of angular contours and connecting pairs of figures nearby. It is only clearly visible when more than one figure is shown, and takes the shape of a net crossing their corners. Although the grouping effect is vivid, the local source of the illusion is completely hidden. Theories explaining this effect as due to the irradiation of illusory streaks (mainly that of Grossberg and Mingolla, 1985a,b) do not fully explain the figural patterns presented here. Illusory effects have already been documented at the angles of various figures, causing them to alter in amplitude and brightness; however, the figure illustrated here appears to have different features and location. Phenomenological observations and an experiment were conducted to assess the role played by geometric and photometric parameters in this illusion. Results showed that sharp angles, in low contrast with the surround, are the main source of the illusion which, however, only becomes visible when at least two figures are close together. These findings are discussed with respect to theories of contour processing and perceptual grouping, and in relation to other illusions. PMID:27445922

  17. Illusory Streaks from Corners and Their Perceptual Integration.

    PubMed

    Roncato, Sergio; Guidi, Stefano; Parlangeli, Oronzo; Battaglini, Luca

    2016-01-01

    Perceptual grouping appears both as organized forms of real figural units and as illusory or "phantom" figures. The phenomenon is visible in the Hermann grid and in configurations which generate color spreading, e.g., "neon effects." These configurations, generally regular repetitive patterns, appear to be crossed by illusory bands filled with a brighter shade or a colored tinge connecting the various loci of illusory effects. In this work, we explore a particular new illusion showing a grouping effect. It manifests as illusory streaks irradiating from the vertexes of angular contours and connecting pairs of figures nearby. It is only clearly visible when more than one figure is shown, and takes the shape of a net crossing their corners. Although the grouping effect is vivid, the local source of the illusion is completely hidden. Theories explaining this effect as due to the irradiation of illusory streaks (mainly that of Grossberg and Mingolla, 1985a,b) do not fully explain the figural patterns presented here. Illusory effects have already been documented at the angles of various figures, causing them to alter in amplitude and brightness; however, the figure illustrated here appears to have different features and location. Phenomenological observations and an experiment were conducted to assess the role played by geometric and photometric parameters in this illusion. Results showed that sharp angles, in low contrast with the surround, are the main source of the illusion which, however, only becomes visible when at least two figures are close together. These findings are discussed with respect to theories of contour processing and perceptual grouping, and in relation to other illusions. PMID:27445922

  18. Streaking in Cascadia ETS Events and Implications for the Subduction Plate Interface

    NASA Astrophysics Data System (ADS)

    Houston, H.; Ghosh, A.

    2011-12-01

    The manner in which episodic tremor and slow slip (ETS) propagates across the subduction plate interface provides constraints on its properties and the physical processes involved. We have been examining catalogs of tremor locations to study propagation patterns during ETS. Tremor in the large Cascadia ETS events propagates mainly via three modes: 1) the slow along-strike advance of ETS, 2) rapid tremor reversals (RTRs) that propagate back from the tremor front in an opposite direction to the along-strike advance, but at speeds 10-40 times faster (Houston et al., Nature Geoscience, 2011), and 3) streaks, even faster migrations of tremor parallel to the plate-convergence direction at speeds ~ 70 km/hr (Ghosh et al., G3, 2011). The UW Seismology group has recently deployed an EarthScope-funded seismic experiment, the Array of Arrays, to image tremor more precisely with eight subarrays. A 15-month catalog of high-resolution tremor locations has been generated based on the triangulation of back-projected beams from the subarrays. We detect tremor streaks in this catalog automatically and systematically determine streak propagation properties. Key issues for constraining streak-generation processes include systematic differences between up- and down-dip traveling streaks, how streak properties may depend on depth, and whether streaks accelerate or decelerate during propagation. Stacking automatically-detected streaks can address some of these issues. Two approaches to automatically detecting streaks have been developed and applied to the M6.8 2010 ETS. One method declares a streak when averaged epicenters continue to move in a roughly constant direction for more than 10 km. The second declares a streak if epicenters during a specified time interval, say 20 min, are sufficiently well-correlated with time. The two methods agree well and detect several streaks per day of 15-30 min duration with speeds consistent with those inferred for the 2008 ETS. Although the detection

  19. Comparative analysis of virus-derived small RNAs within cassava (Manihot esculenta Crantz) infected with cassava brown streak viruses.

    PubMed

    Ogwok, Emmanuel; Ilyas, Muhammad; Alicai, Titus; Rey, Marie E C; Taylor, Nigel J

    2016-04-01

    Infection of plant cells by viral pathogens triggers RNA silencing, an innate antiviral defense mechanism. In response to infection, small RNAs (sRNAs) are produced that associate with Argonaute (AGO)-containing silencing complexes which act to inactivate viral genomes by posttranscriptional gene silencing (PTGS). Deep sequencing was used to compare virus-derived small RNAs (vsRNAs) in cassava genotypes NASE 3, TME 204 and 60444 infected with the positive sense single-stranded RNA (+ssRNA) viruses cassava brown streak virus (CBSV) and Ugandan cassava brown streak virus (UCBSV), the causal agents of cassava brown streak disease (CBSD). An abundance of 21-24nt vsRNAs was detected and mapped, covering the entire CBSV and UCBSV genomes. The 21nt vsRNAs were most predominant, followed by the 22 nt class with a slight bias toward sense compared to antisense polarity, and a bias for adenine and uracil bases present at the 5'-terminus. Distribution and frequency of vsRNAs differed between cassava genotypes and viral genomes. In susceptible genotypes TME 204 and 60444, CBSV-derived sRNAs were seen in greater abundance than UCBSV-derived sRNAs. NASE 3, known to be resistant to UCBSV, accumulated negligible UCBSV-derived sRNAs but high populations of CBSV-derived sRNAs. Transcript levels of cassava homologues of AGO2, DCL2 and DCL4, which are central to the gene-silencing complex, were found to be differentially regulated in CBSV- and UCBSV-infected plants across genotypes, suggesting these proteins play a role in antiviral defense. Irrespective of genotype or viral pathogen, maximum populations of vsRNAs mapped to the cytoplasmic inclusion, P1 and P3 protein-encoding regions. Our results indicate disparity between CBSV and UCBSV host-virus interaction mechanisms, and provide insight into the role of virus-induced gene silencing as a mechanism of resistance to CBSD.

  20. Flat-field response and geometric distortion measurements of optical streak cameras

    SciTech Connect

    Montgomery, D.S.; Drake, R.P.; Jones, B.A.; Wiedwald, J.D.

    1987-08-01

    To accurately measure pulse amplitude, shape, and relative time histories of optical signals with an optical streak camera, it is necessary to correct each recorded image for spatially-dependent gain nonuniformity and geometric distortion. Gain nonuniformities arise from sensitivity variations in the streak-tube photocathode, phosphor screen, image-intensifier tube, and image recording system. These nonuniformities may be severe, and have been observed to be on the order of 100% for some LLNL optical streak cameras. Geometric distortion due to optical couplings, electron-optics, and sweep nonlinearity not only affects pulse position and timing measurements, but affects pulse amplitude and shape measurements as well. By using a 1.053-..mu..m, long-pulse, high-power laser to generate a spatially and temporally uniform source as input to the streak camera, the combined effects of flat-field response and geometric distortion can be measured under the normal dynamic operation of cameras with S-1 photocathodes. Additionally, by using the same laser system to generate a train of short pulses that can be spatially modulated at the input of the streak camera, we can effectively create a two-dimensional grid of equally-spaced pulses. This allows a dynamic measurement of the geometric distortion of the streak camera. We will discuss the techniques involved in performing these calibrations, will present some of the measured results for LLNL optical streak cameras, and will discuss software methods to correct for these effects. 6 refs., 6 figs.

  1. Dust Devils Seen Streaking Across Mars: PART 1--What Are These?

    NASA Technical Reports Server (NTRS)

    2000-01-01

    PIA02376 [figure removed for brevity, see original site]

    Dark streaks, everywhere! Many Mars Global Surveyor (MGS) Mars Orbiter Camera (MOC) images of the middle latitudes of the northern and southern hemispheres of Mars show wild patterns of criss-crossing dark streaks. Many of these streaks are straight and narrow, others exhibit curly arcs, twists, and loops. They often cross over hills, run straight across dunes and ripples, and go through fields of house-sized boulders. The two examples shown above were acquired in the last three months. Both pictures are illuminated by sunlight from the upper left. The first picture (left), showing dark streaks on the rippled flats of Argyre Planitia, covers an area 3 km by 5 km (1.9 by 3.1 miles) at a latitude of 51oS. The second picture (right) shows an area approximately 3 km by 5 km in Promethei Terra at a latitude of 58oS.

    For many months the MOC science team was seeing streaks such as these, but were uncertain how they formed. One speculation was that they might result from the passage of dust devils. Each dust devil would leave a dark streak by removing bright dust from the terrain in its path, revealing a darker surface underneath. An image described by the MOC team in July 1998 showed examples of streaks that were, at the time, speculated to be caused by dust devils.

  2. Evaluation of the DipStreak, a New Device with an Original Streaking Mechanism for Detection, Counting, and Presumptive Identification of Urinary Tract Pathogens

    PubMed Central

    Scarparo, Claudio; Piccoli, Paola; Ricordi, Paolo; Scagnelli, Mariuccia

    2002-01-01

    DipStreak is a new urine culture device with two types of agar attached back-to-back on a plastic paddle. It combines dip-slide technology and an original streaking inoculation mechanism, allowing for bacterial counting and colony isolation. The performance of the DipStreak device with two different medium formulations, CHROMagar and MacConkey media in study A and UriSelect 3 and MacConkey media in study B, was evaluated and compared to that of the reference streak method by using plates of cystine-lactose-electrolyte-deficient (CLED) agar, tryptic soy agar with 5% sheep blood, and UriSelect 3 medium. In study A, 2,000 urine specimens were processed and 511 cultures were found positive. The DipStreak device and the UriSelect 3 and CLED medium plates gave the same detection rate, 99.7%. For the direct identification of Escherichia coli, Proteus mirabilis, and Enterococcus sp. isolates, the DipStreak device and the UriSelect 3 medium plate showed overall sensitivities of 97 and 93.4%, respectively. In study B, 3,000 urine specimens were processed and 714 cultures were found positive. The DipStreak device and the UriSelect 3 and CLED medium plates gave detection rates of 99.4, 99.9, and 99.2%, respectively. For the direct identification of E. coli, P. mirabilis, and Enterococcus sp. isolates, the DipStreak device and the UriSelect 3 medium plate showed overall sensitivities of 88 and 94.4%, respectively. In conclusion, the DipStreak device with both medium formulations represents an attractive and excellent screening method for the reliable detection, counting, and presumptive identification of urinary tract pathogens. It enables bedside urine inoculation and provides a valid means of transporting the sample back to the laboratory, decreasing drastically the rate of false-positive results due to bacterial overgrowth and reducing associated costs. PMID:12037082

  3. Ultra Fast X-ray Streak Camera for TIM Based Platforms

    SciTech Connect

    Marley, E; Shepherd, R; Fulkerson, E S; James, L; Emig, J; Norman, D

    2012-05-02

    Ultra fast x-ray streak cameras are a staple for time resolved x-ray measurements. There is a need for a ten inch manipulator (TIM) based streak camera that can be fielded in a newer large scale laser facility. The LLNL ultra fast streak camera's drive electronics have been upgraded and redesigned to fit inside a TIM tube. The camera also has a new user interface that allows for remote control and data acquisition. The system has been outfitted with a new sensor package that gives the user more operational awareness and control.

  4. Stabilization of the hypersonic boundary layer by finite-amplitude streaks

    NASA Astrophysics Data System (ADS)

    Ren, Jie; Fu, Song; Hanifi, Ardeshir

    2016-02-01

    Stabilization of two-dimensional disturbances in hypersonic boundary layer flows by finite-amplitude streaks is investigated using nonlinear parabolized stability equations. The boundary-layer flows at Mach numbers 4.5 and 6.0 are studied in which both first and second modes are supported. The streaks considered here are driven either by the so-called optimal perturbations (Klebanoff-type) or the centrifugal instability (Görtler-type). When the streak amplitude is in an appropriate range, i.e., large enough to modulate the laminar boundary layer but low enough to not trigger secondary instability, both first and second modes can effectively be suppressed.

  5. Ultra fast x-ray streak camera for ten inch manipulator based platforms.

    PubMed

    Marley, E V; Shepherd, R; Fulkerson, S; James, L; Emig, J; Norman, D

    2012-10-01

    Ultra fast x-ray streak cameras are a staple for time resolved x-ray measurements. There is a need for a ten inch manipulator (TIM) based streak camera that can be fielded in a newer large scale laser facility. The Lawrence Livermore National Laboratory ultra fast streak camera's drive electronics have been upgraded and redesigned to fit inside a TIM tube. The camera also has a new user interface that allows for remote control and data acquisition. The system has been outfitted with a new sensor package that gives the user more operational awareness and control.

  6. Emissivity spectrum of a large "dark streak" from themis infrared imagery

    SciTech Connect

    Brumby, Steven P.; Vaniman, D. T.; Bish, D. L.

    2003-01-01

    'Dark streaks', also known as 'slope streaks', are unusual surface features found on Mars that are known to appear and fade away on timescales of years. Various explanations have been proposed for their origin and composition, including dry avalanches and wet debris or precipitates from brines. Previous investigations have been based on analysis of panchromatic imagery and altimetry from Viking and Mars Global Surveyor missions. We have obtained an infrared emissivity spectrum of a large dark streak on the north western edge of Olympus Mons, using imagery from the THEMIS instrument on the Mars Odyssey 2001 spacecraft.

  7. Development of a multiplexed PCR detection method for Barley and Cereal yellow dwarf viruses, Wheat spindle streak virus, Wheat streak mosaic virus and Soil-borne wheat mosaic virus.

    PubMed

    Deb, Mahua; Anderson, Joseph M

    2008-03-01

    Barley and Cereal yellow dwarf viruses (B/CYDVs), Wheat spindle streak mosaic (WSSMV), Soil-borne wheat mosaic virus (SBWMV) and Wheat streak mosaic virus (WSMV) constitute the most economically important group of wheat viruses. In this paper, a multiplex reverse transcription polymerase chain reaction (M-RT-PCR) method was developed for the simultaneous detection and discrimination of eight viruses: five strains of B/CYDVs, WSSMV, SBWMV and WSMV. The protocol uses specific primer sets for each virus producing five distinct fragments 295, 175, 400, 237, and 365 bp, indicating the presence of two strains of BYDVs, -PAV, -MAV, CYDV-RPV and two unassigned Luteoviridae BYDV-SGV and -RMV, respectively. This system also readily detected WSSMV, SBWMV and WSMV specific amplicons at 154, 219 and 193 bp, respectively. The amplification specificity of these primers was tested against a range of field samples from different parts of United States. The protocol also utilizes fluorescently tagged primers that can streamline the detection of each virus through capillary electrophoresis. This study fulfills the need for a rapid and specific wheat virus diagnostic tool that also has the potential for investigating the epidemiology of these viral diseases.

  8. MaizeGDB Community Curation Tools

    Technology Transfer Automated Retrieval System (TEKTRAN)

    MaizeGDB (http://www.maizegdb.org) is the community database for maize genetics and genomics. The success of the MaizeGDB project largely can be attributed to the involvement of the community of maize geneticists. Members of the community have (1) made their data available by contributing to MaizeGD...

  9. Structured photocathodes for improved high-energy x-ray efficiency in streak cameras

    NASA Astrophysics Data System (ADS)

    Opachich, Y. P.; Bell, P. M.; Bradley, D. K.; Chen, N.; Feng, J.; Gopal, A.; Hatch, B.; Hilsabeck, T. J.; Huffman, E.; Koch, J. A.; Landen, O. L.; MacPhee, A. G.; Nagel, S. R.; Udin, S.

    2016-11-01

    We have designed and fabricated a structured streak camera photocathode to provide enhanced efficiency for high energy X-rays (1-12 keV). This gold coated photocathode was tested in a streak camera and compared side by side against a conventional flat thin film photocathode. Results show that the measured electron yield enhancement at energies ranging from 1 to 10 keV scales well with predictions, and that the total enhancement can be more than 3×. The spatial resolution of the streak camera does not show degradation in the structured region. We predict that the temporal resolution of the detector will also not be affected as it is currently dominated by the slit width. This demonstration with Au motivates exploration of comparable enhancements with CsI and may revolutionize X-ray streak camera photocathode design.

  10. Standard design for National Ignition Facility x-ray streak and framing cameras

    SciTech Connect

    Kimbrough, J. R.; Bell, P. M.; Bradley, D. K.; Holder, J. P.; Kalantar, D. K.; MacPhee, A. G.; Telford, S.

    2010-10-15

    The x-ray streak camera and x-ray framing camera for the National Ignition Facility were redesigned to improve electromagnetic pulse hardening, protect high voltage circuits from pressure transients, and maximize the use of common parts and operational software. Both instruments use the same PC104 based controller, interface, power supply, charge coupled device camera, protective hermetically sealed housing, and mechanical interfaces. Communication is over fiber optics with identical facility hardware for both instruments. Each has three triggers that can be either fiber optic or coax. High voltage protection consists of a vacuum sensor to enable the high voltage and pulsed microchannel plate phosphor voltage. In the streak camera, the high voltage is removed after the sweep. Both rely on the hardened aluminum box and a custom power supply to reduce electromagnetic pulse/electromagnetic interference (EMP/EMI) getting into the electronics. In addition, the streak camera has an EMP/EMI shield enclosing the front of the streak tube.

  11. Use of an Advanced Intercross Line Population for Precise Mapping of Quantitative Trait Loci for Gray Leaf Spot Resistance in Maize

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Grey leaf spot (GLS) (caused by Cercospora zeae-maydis) of maize (Zea mays L.)is an important fungal disease of maize in the U.S. and worldwide. The IBM population, an advanced intercross recombinant inbred line population derived from a cross between the maize lines Mo17 (resistant) and B73 (sus...

  12. Streak detection and analysis pipeline for space-debris optical images

    NASA Astrophysics Data System (ADS)

    Virtanen, Jenni; Poikonen, Jonne; Säntti, Tero; Komulainen, Tuomo; Torppa, Johanna; Granvik, Mikael; Muinonen, Karri; Pentikäinen, Hanna; Martikainen, Julia; Näränen, Jyri; Lehti, Jussi; Flohrer, Tim

    2016-04-01

    We describe a novel data-processing and analysis pipeline for optical observations of moving objects, either of natural (asteroids, meteors) or artificial origin (satellites, space debris). The monitoring of the space object populations requires reliable acquisition of observational data, to support the development and validation of population models and to build and maintain catalogues of orbital elements. The orbital catalogues are, in turn, needed for the assessment of close approaches (for asteroids, with the Earth; for satellites, with each other) and for the support of contingency situations or launches. For both types of populations, there is also increasing interest to detect fainter objects corresponding to the small end of the size distribution. The ESA-funded StreakDet (streak detection and astrometric reduction) activity has aimed at formulating and discussing suitable approaches for the detection and astrometric reduction of object trails, or streaks, in optical observations. Our two main focuses are objects in lower altitudes and space-based observations (i.e., high angular velocities), resulting in long (potentially curved) and faint streaks in the optical images. In particular, we concentrate on single-image (as compared to consecutive frames of the same field) and low-SNR detection of objects. Particular attention has been paid to the process of extraction of all necessary information from one image (segmentation), and subsequently, to efficient reduction of the extracted data (classification). We have developed an automated streak detection and processing pipeline and demonstrated its performance with an extensive database of semisynthetic images simulating streak observations both from ground-based and space-based observing platforms. The average processing time per image is about 13 s for a typical 2k-by-2k image. For long streaks (length >100 pixels), primary targets of the pipeline, the detection sensitivity (true positives) is about 90% for

  13. Quality protein maize for Africa: closing the protein inadequacy gap in vulnerable populations.

    PubMed

    Nuss, Emily T; Tanumihardjo, Sherry A

    2011-05-01

    Africa shares a unique relationship with maize (Zea mays). After its introduction from New World explorers, maize was quickly adopted as the cornerstone of local cuisine, especially in sub-Saharan countries. Although maize provides macro- and micronutrients required for humans, it lacks adequate amounts of the essential amino acids lysine and tryptophan. For those consuming >50% of their daily energy from maize, pandemic protein malnutrition may exist. Severe protein and energy malnutrition increases susceptibility to life-threatening diseases such as tuberculosis and gastroenteritis. A nutritionally superior maize cultivar named quality protein maize (QPM) represents nearly one-half century of research dedicated to malnutrition eradication. Compared with traditional maize types, QPM has twice the amount of lysine and tryptophan, as well as protein bioavailability that rivals milk casein. Animal and human studies suggest that substituting QPM for common maize results in improved health. However, QPM's practical contribution to maize-subsisting populations remains unresolved. Herein, total protein and essential amino acid requirements recommended by the WHO and the Institute of Medicine were applied to estimate QPM target intake levels for young children and adults, and these were compared with mean daily maize intakes by African country. The comparisons revealed that ~100 g QPM is required for children to maintain adequacy of lysine, the most limiting amino acid, and nearly 500 g is required for adults. This represents a 40% reduction in maize intake relative to common maize to meet protein requirements. The importance of maize in Africa underlines the potential for QPM to assist in closing the protein inadequacy gap.

  14. An Optical Streaking Method for Measuring Femtosecond Electron Bunches

    SciTech Connect

    Ding, Yuantao; Bane, Karl L.F.; Huang, Zhirong; /SLAC

    2011-12-14

    The measurement of the ultra-short electron bunch length on the femtosecond time scale constitutes a very challenging problem. In the x-ray free electron laser facilities such as the Linac Coherent Light Source, generation of a sub-ten femtoseconds electron beam with 20pC charge is possible, but direct measurements are very difficult due to the resolution limit of the present diagnostics. We propose a new method here based on the measurement of the electron beam energy modulation induced from laser-electron interaction in a short wiggler. A typical optical streaking method requires a laser wavelength much longer than the electron bunch length. In this paper a laser with its wavelength shorter than the electron bunch length has been adopted, while the slope on the laser intensity envelope is used to distinguish the different periods. With this technique it is possible to reconstruct the bunch longitudinal profile from a single shot measurement. Generation of ultrashort x-ray pulses at femtoseconds (fs) scale is of great interest within synchrotron radiation and free electron laser (FEL) user community. One of the simple methods is to operate the FEL facility at low charge. At the Linac Coherent Light Source (LCLS), we have demonstrated the capability of generating ultrashort electron-beam (e-beam) with a duration of less than 10 fs fwhm using 20 pC charge. The x-ray pulses have been delivered to the x-ray users with a similar or even shorter pulse duration. However, The measurement of such short electron or x-ray pulse length at the fs time-scale constitutes a challenging problem. A standard method using an S-band radio-frequency (rf) transverse deflector has been established at LCLS, which works like a streak camera for electrons and is capable of resolving bunch lengths as short as 25 fs fwhm. With this device, the electrons are transversely deflected by the high-frequency time-variation of the deflecting fields. Increasing the deflecting voltage and rf frequency

  15. Pedestal Craters and Wind Streaks, South Medusae Fossae

    NASA Technical Reports Server (NTRS)

    1999-01-01

    Mars is a desert planet in which wind has a considerable effect on the landscape. Bright and dark wind streaks in this image indicate past movement of fine sediment across the landscape from upper left toward lower right. Two impact craters that look like flowers or starfish are seen in the lower portion of the image. The ejecta deposits of these craters are raised above the surrounding terrain, and indicate that wind has deflated a layer of material (that is, blown it away, thus lowering the surface) that was present at the time that the craters formed. The craters were formed by impacts of meteorites into the earlier, higher surface, and the rocks and gravel thrown out when they formed protected some of this former layer from the wind's effects. This picture--showing part of the Medusae Fossae region near the martian equator--was taken in early April 1999 and covers an area only 1 kilometer (0.62 miles)wide. Illumination is from the lower right.

    Malin Space Science Systems and the California Institute of Technology built the MOC using spare hardware from the Mars Observer mission. MSSS operates the camera from its facilities in San Diego, CA. The Jet Propulsion Laboratory's Mars Surveyor Operations Project operates the Mars Global Surveyor spacecraft with its industrial partner, Lockheed Martin Astronautics, from facilities in Pasadena, CA and Denver, CO.

  16. Measuring pulp consistency and fines content with a streak camera

    NASA Astrophysics Data System (ADS)

    Saarela, J.; Törmänen, M.; Myllylä, R.

    2003-10-01

    The problem of determining the fines content of pulp in cases where consistency is not known remains to be solved. We explored the hypothesis that this problem may be solved by studying shape changes in a laser pulse after it has travelled through the pulp. A matrix was constructed of pulp samples with consistencies varying from 0 to 1.5% by increments of 0.2% and fines contents varying from 0 to 50% by 10% increments. A streak camera was used to record three pulses simultaneously. The first was a reference pulse, which was used to calibrate the measurement pulses. The second was a pulse measured at an angle of 90° to the straight light path. The third was the straight path pulse. Different fines contents form their own lines on consistency-maximum power graphs and consistency-time of 50% power fall graphs. When transmitted power is plotted against time of 50% power fall the lines representing different fines contents cross each other. These results indicate that the fines content and consistency can be measured in some cases with a single measurement. Also, if water is added in a controlled manner, measurement of the lowering in consistency allows the original consistency and fines content to be determined.

  17. Polar Dunes In Summer Exhibit Frost Patches, Wind Streaks

    NASA Technical Reports Server (NTRS)

    1999-01-01

    Mars Global Surveyor passes over the north polar region of the red planet twelve times each day, offering many opportunities to observe how the polar cap frosts and dunes are changing as the days goby. Right now it is summer in the north. This picture, taken the second week of April 1999, shows darks and dunes and remnant patches of bright frost left over from the winter that ended in July 1998. Dark streaks indicate recent movement of sand. The picture covers an area only 1.4 kilometers (0.9 miles)across and is illuminated from the upper right.

    Malin Space Science Systems and the California Institute of Technology built the MOC using spare hardware from the Mars Observer mission. MSSS operates the camera from its facilities in San Diego, CA. The Jet Propulsion Laboratory's Mars Surveyor Operations Project operates the Mars Global Surveyor spacecraft with its industrial partner, Lockheed Martin Astronautics, from facilities in Pasadena, CA and Denver, CO.

  18. Spatiotemporal mechanical variation reveals critical role for rho kinase during primitive streak morphogenesis.

    PubMed

    Henkels, Julia; Oh, Jaeho; Xu, Wenwei; Owen, Drew; Sulchek, Todd; Zamir, Evan

    2013-02-01

    Large-scale morphogenetic movements during early embryo development are driven by complex changes in biochemical and biophysical factors. Current models for amniote primitive streak morphogenesis and gastrulation take into account numerous genetic pathways but largely ignore the role of mechanical forces. Here, we used atomic force microscopy (AFM) to obtain for the first time precise biomechanical properties of the early avian embryo. Our data reveal that the primitive streak is significantly stiffer than neighboring regions of the epiblast, and that it is stiffer than the pre-primitive streak epiblast. To test our hypothesis that these changes in mechanical properties are due to a localized increase of actomyosin contractility, we inhibited actomyosin contractility via the Rho kinase (ROCK) pathway using the small-molecule inhibitor Y-27632. Our results using several different assays show the following: (1) primitive streak formation was blocked; (2) the time-dependent increase in primitive streak stiffness was abolished; and (3) convergence of epiblast cells to the midline was inhibited. Taken together, our data suggest that actomyosin contractility is necessary for primitive streak morphogenesis, and specifically, ROCK plays a critical role. To better understand the underlying mechanisms of this fundamental process, future models should account for the findings presented in this study.

  19. New observations of Bolivian wind streaks by JPL Airborne SAR: Preliminary results

    NASA Technical Reports Server (NTRS)

    Blumberg, Dan G.; Greeley, Ronald

    1995-01-01

    In 1993 NASA's Jet Propulsion Laboratory Airborne Synthetic Aperture Radar system (AIRSAR) was deployed to South America to collect multi-parameter radar data over pre-selected targets. Among the sites targeted was a series of wind streaks located in the Altiplano of Bolivia. The objective of this investigation is to study the effect of wavelength, polarization, and incidence angle on the visibility of wind streaks in radar data. Because this is a preliminary evaluation of the recently acquired data we will focus on one scene and, thus, only on the effects of wavelength and polarization. Wind streaks provide information on the near-surface prevailing winds and on the abundance of winderodible material, such as sand. The potential for a free-flyer radar system that could provide global radar images in multiple wavelengths, polarizations, and incidence angles requires definition of system parameters for mission planning. Furthermore, thousands of wind streaks were mapped from Magellan radar images of Venus; their interpretation requires an understanding of the interaction of radar with wind streaks and the surrounding terrain. Our experiment was conducted on wind streaks in the Altiplano of Bolivia to address these issues.

  20. Reactive Control of Boundary Layer Streaks Induced by Freestream Turbulence Using Plasma Actuators

    NASA Astrophysics Data System (ADS)

    Gouder, Kevin; Naguib, Ahmed; Lavoie, Philippe; Morrison, Jonathan

    2015-11-01

    Over the past few years we have carried out a systematic series of investigations aimed at evaluating the capability of a plasma-actuator-based feedforward-feedback control system to weaken streaks induced ``synthetically'' in a Blasius boundary layer via dynamic roughness elements. This work has been motivated by the delay of bypass boundary layer transition in which the streaks form stochastically beneath a freestream with turbulence of intensity of more than approximately 1%. In the present work, we carry forward the knowhow from our previous research in a first attempt to control such naturally occurring streaks. The experimental setup consists of a turbulence-generating grid upstream of a flat plate with a sharp leading edge. At the freestream velocity of the experiment, turbulent spot formation is observed to start at a streamwise location of x ~ 350 mm from the leading edge. The control system is implemented within a streamwise domain stretching from x = 150 mm to 300mm, where the streaks exhibit linear growth. At the upstream and downstream end of the domain a feedforward and a feedback wall-shear-stress sensors are utilized. The output from the sensors is fed to appropriately designed controllers which drive two plasma actuators providing positive and negative wall-normal forcing to oppose naturally occurring high- and low-speed streaks respectively. The results provide an assessment of the viability of the control approach to weaken the boundary layer streaks and to delay transition.

  1. Maize terpenoid phytoalexins function in resistance against both abiotic and biotic stress

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Maize (Zea mays) crop production, which is an essential part of the world’s grain supply, is limited by insect pests, pathogen diseases, and unfavorable weather, such as drought. Zealexins and kauralexins belong to recently identified families of terpenoid phytoalexins that function in maize defense...

  2. Effects of Hot Streak Shape on Rotor Heating in a High-Subsonic Single-Stage Turbine

    NASA Technical Reports Server (NTRS)

    Dorney, Daniel J.; Gundy-Burlet, Karen L.; Norvig, Peter (Technical Monitor)

    1999-01-01

    Experimental data have shown that combustor temperature non-uniformities can lead to the excessive heating of first-stage rotor blades in turbines. This heating of the rotor blades can lead to thermal fatigue and degrade turbine performance. The results of recent studies have shown that variations in the circumferential location (clocking) of the hot streak relative to the first-stage vane airfoils can be used to minimize the adverse effects of the hot streak. The effects of the hot streak/airfoil count ratio on the heating patterns of turbine airfoils have also been evaluated. In the present investigation, three-dimensional unsteady Navier-Stokes simulations have been performed for a single-stage high-pressure turbine operating in high subsonic flow. In addition to a simulation of the baseline turbine, simulations have been performed for circular and elliptical hot streaks of varying sizes in an effort to represent different combustor designs. The predicted results for the baseline simulation show good agreement with the available experimental data. The results of the hot streak simulations indicate: that a) elliptical hot streaks mix more rapidly than circular hot streaks, b) for small hot streak surface area the average rotor temperature is not a strong function of hot streak temperature ratio or shape, and c) hot streaks with larger surface area interact with the secondary flows at the rotor hub endwall, generating an additional high temperature region.

  3. A simple, novel and high efficiency sap inoculation method to screen for tobacco streak virus.

    PubMed

    Sundaresha, S; Sreevathsa, Rohini; Balol, Gurupada B; Keshavareddy, G; Rangaswamy, K T; Udayakumar, M

    2012-10-01

    A rapid and efficient sap inoculation method for tobacco streak virus (TSV) was developed in sunflower. Sap from TSV-infected sunflower plants was freshly extracted in phosphate buffer and diluted serially from 10(-1) to 10(-8). Two-day old seedlings of sunflower were injured at the meristem and immersed in the sap for 10 min, maintained at 20 °C for 2-3 days and shifted to greenhouse. The surviving seedlings in the respective sap dilution were scored for symptoms of sunflower necrosis disease (SND). SND symptoms were seen in 80 % of the seedlings inoculated with a sap dilution of 10(-5). ELISA and RT-PCR analysis of coat protein and movement protein of TSV confirmed SND symptoms. The methodology was also found to be reproducible when the sap from the infected plants was inoculated onto healthy plants. The main aim of the study was to develop a primary screening strategy for the selection of transgenics developed for SND resistance. This methodology can also be extended for the analysis of resistance against other viruses.

  4. A genome-wide association study reveals genes associated with fusarium ear rot resistance in a maize core diversity panel

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Fusarium ear rot is a common disease of maize that affects food and feed quality globally. Resistance to the disease is highly quantitative, and maize breeders have difficulty incorporating polygenic resistance alleles from unadapted donor sources into elite breeding populations without having a ne...

  5. Chiral oily streaks in a smectic-A liquid crystal.

    PubMed

    Nemitz, Ian R; Ferris, Andrew J; Lacaze, Emmanuelle; Rosenblatt, Charles

    2016-08-21

    The liquid crystal octylcyanobiphenyl (8CB) was doped with the chiral agent CB15 and spin-coated onto a substrate treated for planar alignment of the director, resulting in a film of thickness several hundred nm in the smectic-A phase. In both doped and undoped samples, the competing boundary conditions - planar alignment at the substrate and vertical alignment at the free surface - cause the liquid crystal to break into a series of flattened hemicylinders to satisfy the boundary conditions. When viewed under an optical microscope with crossed polarizers, this structure results in a series of dark and light stripes ("oily streaks") of period ∼1 μm. In the absence of chiral dopant the stripes run perpendicular to the substrate's easy axis. However, when doped with chiral CB15 at concentrations up to c = 4 wt%, the stripe orientation rotates by a temperature-dependent angle φ with respect to the c = 0 stripe orientation, where φ increases monotonically with c. φ is largest just below the nematic - smectic-A transition temperature TNA and decreases with decreasing temperature. As the temperature is lowered, φ relaxes to a steady-state orientation close to zero within ∼1 °C of TNA. We suggest that the rotation phenomenon is a manifestation of the surface electroclinic effect: The rotation is due to the weak smectic order parameter and resulting large director tilt susceptibility with respect to the smectic layer normal near TNA, in conjunction with an effective surface electric field due to polar interactions between the liquid crystal and substrate. PMID:27426740

  6. Chiral oily streaks in a smectic-A liquid crystal.

    PubMed

    Nemitz, Ian R; Ferris, Andrew J; Lacaze, Emmanuelle; Rosenblatt, Charles

    2016-08-21

    The liquid crystal octylcyanobiphenyl (8CB) was doped with the chiral agent CB15 and spin-coated onto a substrate treated for planar alignment of the director, resulting in a film of thickness several hundred nm in the smectic-A phase. In both doped and undoped samples, the competing boundary conditions - planar alignment at the substrate and vertical alignment at the free surface - cause the liquid crystal to break into a series of flattened hemicylinders to satisfy the boundary conditions. When viewed under an optical microscope with crossed polarizers, this structure results in a series of dark and light stripes ("oily streaks") of period ∼1 μm. In the absence of chiral dopant the stripes run perpendicular to the substrate's easy axis. However, when doped with chiral CB15 at concentrations up to c = 4 wt%, the stripe orientation rotates by a temperature-dependent angle φ with respect to the c = 0 stripe orientation, where φ increases monotonically with c. φ is largest just below the nematic - smectic-A transition temperature TNA and decreases with decreasing temperature. As the temperature is lowered, φ relaxes to a steady-state orientation close to zero within ∼1 °C of TNA. We suggest that the rotation phenomenon is a manifestation of the surface electroclinic effect: The rotation is due to the weak smectic order parameter and resulting large director tilt susceptibility with respect to the smectic layer normal near TNA, in conjunction with an effective surface electric field due to polar interactions between the liquid crystal and substrate.

  7. Dust Devils Seen Streaking Across Mars: PART 1--What Are These?

    NASA Technical Reports Server (NTRS)

    2000-01-01

    PIA02376 [figure removed for brevity, see original site]

    PIA02377 [figure removed for brevity, see original site]

    Dark streaks, everywhere! Many Mars Global Surveyor (MGS) Mars Orbiter Camera (MOC) images of the middle latitudes of the northern and southern hemispheres of Mars show wild patterns of criss-crossing dark streaks. Many of these streaks are straight and narrow, others exhibit curly arcs, twists, and loops. They often cross over hills, run straight across dunes and ripples, and go through fields of house-sized boulders. The two examples shown above were acquired in the last three months. Both pictures are illuminated by sunlight from the upper left. The first picture (left), showing dark streaks on the rippled flats of Argyre Planitia, covers an area 3 km by 5 km (1.9 by 3.1 miles) at a latitude of 51oS. The second picture (right) shows an area approximately 3 km by 5 km in Promethei Terra at a latitude of 58oS.

    For many months the MOC science team was seeing streaks such as these, but were uncertain how they formed. One speculation was that they might result from the passage of dust devils. Each dust devil would leave a dark streak by removing bright dust from the terrain in its path, revealing a darker surface underneath. An image described by the MOC team in July 1998 showed examples of streaks that were, at the time, speculated to be caused by dust devils.

  8. Mars Eolian Geology at Airphoto Scales: The Large Wind Streaks of Western Arabia Terra

    NASA Technical Reports Server (NTRS)

    Edgett, Kenneth S.

    2001-01-01

    More than 27,000 pictures at aerial photograph scales (1.5-12 m/pixel) have been acquired by the Mars Global Surveyor (MGS) Mars Orbiter Camera (MOC) since September 1997. The pictures are valuable for testing hypotheses about geologic history and processes of Mars. Of particular interest are eolian features connected to surface albedo patterns. This work is focused on low-albedo wind streaks, some over 100 km long, in western Arabia Terra. Each streak is widest where it originates at an impact crater (typically 25-150 km diameter). The streaks taper downwind. Within the associated craters there is a lower-albedo surface that, in nearly all observed cases, includes barchan dunes indicative of transport in the same direction as the wind streaks. Upwind of the dunes there is usually an outcrop of layered material that might have served as a source for dune sand. MOC images show that the west Arabia streaks consist of a smooth-surfaced, multiple-meters-thick, mantle (smooth at 1.5 m/pixel) that appears to be superposed on local surfaces. No dunes are present, indicating that down-streak transport of sediment via saltation and traction have not occurred. Two models might explain the observed properties: (1) the streaks consist of dark silt- and clay-sized grains deflated from the adjacent crater interiors and deposited from suspension or (2) they are remnants (protected in the lee of impact crater rims) of a formerly much larger, regional covering of low albedo, smooth-surfaced mantle. The latter hypothesis is based on observation of low albedo mantled surfaces occurring south of west Arabia in Terra Meridiani. For reasons yet unknown, a large fraction of the martian equatorial regions are covered by low albedo, mesa-forming material that lies unconformably atop eroded layered and cratered terrain. Both hypotheses are being explored via continued selective targeting of new MOC images as well as analyses of the new data.

  9. The sedimentology and dynamics of crater-affiliated wind streaks in western Arabia Terra, Mars and Patagonia, Argentina

    USGS Publications Warehouse

    Rodriguez, J.A.P.; Tanaka, K.L.; Yamamoto, A.; Berman, D.C.; Zimbelman, J.R.; Kargel, J.S.; Sasaki, S.; Jinguo, Y.; Miyamoto, H.

    2010-01-01

    Wind streaks comprise recent aeolian deposits that have been extensively documented on Venus, Earth and Mars. Martian wind streaks are among the most abundant surface features on the planet and commonly extend from the downwind margins of impact craters. Previous studies of wind streaks emerging from crater interior deposits suggested that the mode of emplacement was primarily related to the deposition of silt-sized particles as these settled from plumes. We have performed geologic investigations of two wind streaks clusters; one situated in western Arabia Terra, a region in the northern hemisphere of Mars, and another in an analogous terrestrial site located in southern Patagonia, Argentina, where occurrences of wind streaks emanate from playas within maar craters. In both these regions we have identified bedforms in sedimentary deposits on crater floors, along wind-facing interior crater margins, and along wind streaks. These observations indicate that these deposits contain sand-sized particles and that sediment migration has occurred via saltation from crater interior deposits to wind streaks. In Arabia Terra and in Patagonia wind streaks initiate from crater floors that contain lithic and evaporitic sedimentary deposits, suggesting that the composition of wind streak source materials has played an important role in development. Spatial and topographic analyses suggest that regional clustering of wind streaks in the studied regions directly correlates to the areal density of craters with interior deposits, the degree of proximity of these deposits, and the craters' rim-to-floor depths. In addition, some (but not all) wind streaks within the studied clusters have propagated at comparable yearly (Earth years) rates. Extensive saltation is inferred to have been involved in its propagation based on the studied terrestrial wind streak that shows ripples and dunes on its surface and the Martian counterpart changes orientation toward the downslope direction where it

  10. A simplified method for simultaneous detection of Rice stripe virus and Rice black-streaked dwarf virus in insect vector.

    PubMed

    Li, Shuo; Wang, Xi; Xu, Jianxiang; Ji, Yinghua; Zhou, Yijun

    2015-01-01

    Rice stripe virus (RSV) and Rice black-streaked dwarf virus (RBSDV) are transmitted by their common vector small brown planthopper (SBPH) that cause serious crop losses in China. A simple reverse transcription-PCR method was developed for the simultaneous detection of RSV and RBSDV in single SBPH. Three primers targeted to RSV-RNA4 and RBSDV-S2 segments were designed to amplify respectively 1114-bp and 414-bp fragments in a reaction. The method is reliable, rapid and inexpensive for detecting the two viruses in vector, which could facilitate better forecasting and control of the virus diseases. Using this method, it was found that SBPH could carry RSV and RBSDV simultaneously. PMID:25455902

  11. A simplified method for simultaneous detection of Rice stripe virus and Rice black-streaked dwarf virus in insect vector.

    PubMed

    Li, Shuo; Wang, Xi; Xu, Jianxiang; Ji, Yinghua; Zhou, Yijun

    2015-01-01

    Rice stripe virus (RSV) and Rice black-streaked dwarf virus (RBSDV) are transmitted by their common vector small brown planthopper (SBPH) that cause serious crop losses in China. A simple reverse transcription-PCR method was developed for the simultaneous detection of RSV and RBSDV in single SBPH. Three primers targeted to RSV-RNA4 and RBSDV-S2 segments were designed to amplify respectively 1114-bp and 414-bp fragments in a reaction. The method is reliable, rapid and inexpensive for detecting the two viruses in vector, which could facilitate better forecasting and control of the virus diseases. Using this method, it was found that SBPH could carry RSV and RBSDV simultaneously.

  12. A rapid and efficient method for assessing pathogenicity of ustilago maydis on maize and teosinte lines.

    PubMed

    Chavan, Suchitra; Smith, Shavannor M

    2014-01-03

    Maize is a major cereal crop worldwide. However, susceptibility to biotrophic pathogens is the primary constraint to increasing productivity. U. maydis is a biotrophic fungal pathogen and the causal agent of corn smut on maize. This disease is responsible for significant yield losses of approximately $1.0 billion annually in the U.S.(1) Several methods including crop rotation, fungicide application and seed treatments are currently used to control corn smut(2). However, host resistance is the only practical method for managing corn smut. Identification of crop plants including maize, wheat, and rice that are resistant to various biotrophic pathogens has significantly decreased yield losses annually(3-5). Therefore, the use of a pathogen inoculation method that efficiently and reproducibly delivers the pathogen in between the plant leaves, would facilitate the rapid identification of maize lines that are resistant to U. maydis. As, a first step toward indentifying maize lines that are resistant to U. maydis, a needle injection inoculation method and a resistance reaction screening method was utilized to inoculate maize, teosinte, and maize x teosinte introgression lines with a U. maydis strain and to select resistant plants. Maize, teosinte and maize x teosinte introgression lines, consisting of about 700 plants, were planted, inoculated with a strain of U. maydis, and screened for resistance. The inoculation and screening methods successfully identified three teosinte lines resistant to U. maydis. Here a detailed needle injection inoculation and resistance reaction screening protocol for maize, teosinte, and maize x teosinte introgression lines is presented. This study demonstrates that needle injection inoculation is an invaluable tool in agriculture that can efficiently deliver U. maydis in between the plant leaves and has provided plant lines that are resistant to U. maydis that can now be combined and tested in breeding programs for improved disease resistance.

  13. MaizeGDB: The Maize Genetics and Genomics Database

    Technology Transfer Automated Retrieval System (TEKTRAN)

    MaizeGDB is the community database for biological information about the crop plant Zea mays. Genetic, genomic, sequence, gene product, functional characterization, literature reference, and person/organization contact information are among the datatypes stored at MaizeGDB. At the project's website...

  14. MaizeGDB: The Maize Genetics and Genomics Database.

    Technology Transfer Automated Retrieval System (TEKTRAN)

    MaizeGDB is the community database for biological information about the crop plant Zea mays. Genomic, genetic, sequence, gene product, functional characterization, literature reference, and person/organization contact information are among the datatypes stored at MaizeGDB. At the project’s website...

  15. Synthetic streak images (x-t diagrams) from high-speed digital video records

    NASA Astrophysics Data System (ADS)

    Settles, Gary

    2013-11-01

    Modern digital video cameras have entirely replaced the older photographic drum and rotating-mirror cameras for recording high-speed physics phenomena. They are superior in almost every regard except, at speeds approaching one million frames/s, sensor segmentation results in severely reduced frame size, especially height. However, if the principal direction of subject motion is arranged to be along the frame length, a simple Matlab code can extract a row of pixels from each frame and stack them to produce a pseudo-streak image or x-t diagram. Such a 2-D image can convey the essence of the large volume of information contained in a high-speed video sequence, and can be the basis for the extraction of quantitative velocity data. Examples include streak shadowgrams of explosions and gunshots, streak schlieren images of supersonic cavity-flow oscillations, and direct streak images of shock-wave motion in polyurea samples struck by gas-gun projectiles, from which the shock Hugoniot curve of the polymer is measured. This approach is especially useful, since commercial streak cameras remain very expensive and rooted in 20th-century technology.

  16. Distinct Wnt-driven primitive streak-like populations reflect in vivo lineage precursors

    PubMed Central

    Tsakiridis, Anestis; Huang, Yali; Blin, Guillaume; Skylaki, Stavroula; Wymeersch, Filip; Osorno, Rodrigo; Economou, Costas; Karagianni, Eleni; Zhao, Suling; Lowell, Sally; Wilson, Valerie

    2014-01-01

    During gastrulation, epiblast cells are pluripotent and their fate is thought to be constrained principally by their position. Cell fate is progressively restricted by localised signalling cues from areas including the primitive streak. However, it is unknown whether this restriction accompanies, at the individual cell level, a reduction in potency. Investigation of these early transition events in vitro is possible via the use of epiblast stem cells (EpiSCs), self-renewing pluripotent cell lines equivalent to the postimplantation epiblast. Strikingly, mouse EpiSCs express gastrulation stage regional markers in self-renewing conditions. Here, we examined the differentiation potential of cells expressing such lineage markers. We show that undifferentiated EpiSC cultures contain a major subfraction of cells with reversible early primitive streak characteristics, which is mutually exclusive to a neural-like fraction. Using in vitro differentiation assays and embryo grafting we demonstrate that primitive streak-like EpiSCs are biased towards mesoderm and endoderm fates while retaining pluripotency. The acquisition of primitive streak characteristics by self-renewing EpiSCs is mediated by endogenous Wnt signalling. Elevation of Wnt activity promotes restriction towards primitive streak-associated lineages with mesendodermal and neuromesodermal characteristics. Collectively, our data suggest that EpiSC pluripotency encompasses a range of reversible lineage-biased states reflecting the birth of pioneer lineage precursors from a pool of uncommitted EpiSCs similar to the earliest cell fate restriction events taking place in the gastrula stage epiblast. PMID:24595287

  17. Incidence of Fusarium Species and Mycotoxins in Silage Maize

    PubMed Central

    Eckard, Sonja; Wettstein, Felix E.; Forrer, Hans-Rudolf; Vogelgsang, Susanne

    2011-01-01

    Maize is frequently infected by the Fusarium species producing mycotoxins. Numerous investigations have focused on grain maize, but little is known about the Fusarium species in the entire plant used for silage. Furthermore, mycotoxins persist during the ensiling process and thus endanger feed safety. In the current study, we analyzed 20 Swiss silage maize samples from growers’ fields for the incidence of Fusarium species and mycotoxins. The species spectrum was analyzed morphologically and mycotoxins were measured by LC-MS/MS. A pre-harvest visual disease rating showed few disease symptoms. In contrast, the infection rate of two-thirds of the harvest samples ranged from 25 to 75% and twelve different Fusarium species were isolated. The prevailing species were F. sporotrichioides, F. verticillioides and F. graminearum. No infection specificity for certain plant parts was observed. The trichothecene deoxynivalenol (DON) was found in each sample (ranging from 780 to 2990 µg kg−1). Other toxins detected in descending order were zearalenone, further trichothecenes (nivalenol, HT-2 and T-2 toxin, acetylated DON) and fumonisins. A generalized linear regression model containing the three cropping factors harvest date, pre-precrop and seed treatment was established, to explain DON contamination of silage maize. Based on these findings, we suggest a European-wide survey on silage maize. PMID:22069750

  18. Maize rhabdovirus-vector transmission

    Technology Transfer Automated Retrieval System (TEKTRAN)

    oth of the plant-infecting rhabdovirus genera, Nucleorhabdovirus and Cytorhabdovirus, contain viruses that infect maize (Zea mays L.). The maize infecting rhabdoviruses are transmitted by hemipteran insects in the families Cicadellidae and Delphacidae in a persistent propagative manner. This chapt...

  19. Maize Genetics and Genomics Database

    Technology Transfer Automated Retrieval System (TEKTRAN)

    This report is provided each year to our stakeholders in the maize genetic community. In this report, we describe the five-year plan for MaizeGDB reviewed in early 2008 by the USDA-ARS peer review process and which was developed with inputs from our Working Group and the Allerton 2007 Report (MNL 82...

  20. Imaging plasmonic fields near gold nanospheres in attosecond time-resolved streaked photoelectron spectra

    NASA Astrophysics Data System (ADS)

    Li, Jianxiong; Thumm, Uwe

    2016-05-01

    To study time-resolved photoemission from gold nanospheres, we introduce a quantum-mechanical approach, including the plasmonic near-field-enhancement of the streaking field at the surface of the nanosphere. We use Mie theory to calculate the plasmonically enhanced fields near 10 to 200 nm gold nanospheres, driven by incident near infrared (NIR) or visible laser pulses. We model the gold conduction band in terms of a spherical square well potential. Our simulated streaked photoelectron spectra reveal a plasmonic amplitude enhancement and phase shift related to calculations that exclude the induced plasmonic field. The phase shift is due to the plasma resonance. This suggests the use of streaked photoelectron spectroscopy for imaging the dielectric response and plasmonic field near nanoparticles. Supported by the NSD-EPSCoR program, NSF, and the USDoE.

  1. Performances of a solid streak camera based on conventional CCD with nanosecond time resolution

    NASA Astrophysics Data System (ADS)

    Wang, Bo; Bai, Yonglin; Zhu, Bingli; Gou, Yongsheng; Xu, Peng; Bai, XiaoHong; Liu, Baiyu; Qin, Junjun

    2015-02-01

    Imaging systems with high temporal resolution are needed to study rapid physical phenomena ranging from shock waves, including extracorporeal shock waves used for surgery, to diagnostics of laser fusion and fuel injection in internal combustion engines. However, conventional streak cameras use a vacuum tube making thus fragile, cumbersome and expensive. Here we report an CMOS streak camera project consists in reproducing completely this streak camera functionality with a single CMOS chip. By changing the mode of charge transfer of CMOS image sensor, fast photoelectric diagnostics of single point with linear CMOS and high-speed line scanning with array CMOS sensor can be achieved respectively. A fast photoelectric diagnostics system has been designed and fabricated to investigate the feasibility of this method. Finally, the dynamic operation of the sensors is exposed. Measurements show a sample time of 500 ps and a time resolution better than 2 ns.

  2. Impact of laser phase and amplitude noises on streak camera temporal resolution

    SciTech Connect

    Wlotzko, V.; Uhring, W.; Summ, P.

    2015-09-15

    Streak cameras are now reaching sub-picosecond temporal resolution. In cumulative acquisition mode, this resolution does not entirely rely on the electronic or the vacuum tube performances but also on the light source characteristics. The light source, usually an actively mode-locked laser, is affected by phase and amplitude noises. In this paper, the theoretical effects of such noises on the synchronization of the streak system are studied in synchroscan and triggered modes. More precisely, the contribution of band-pass filters, delays, and time walk is ascertained. Methods to compute the resulting synchronization jitter are depicted. The results are verified by measurement with a streak camera combined with a Ti:Al{sub 2}O{sub 3} solid state laser oscillator and also a fiber oscillator.

  3. Absolute calibration method for fast-streaked, fiber optic light collection, spectroscopy systems.

    SciTech Connect

    Johnston, Mark D.; Frogget, Brent; Oliver, Bryan Velten; Maron, Yitzhak; Droemer, Darryl W.; Crain, Marlon D.

    2010-04-01

    This report outlines a convenient method to calibrate fast (<1ns resolution) streaked, fiber optic light collection, spectroscopy systems. Such a system is used to collect spectral data on plasmas generated in the A-K gap of electron beam diodes fielded on the RITS-6 accelerator (8-12MV, 140-200kA). On RITS, light is collected through a small diameter (200 micron) optical fiber and recorded on a fast streak camera at the output of 1 meter Czerny-Turner monochromator (F/7 optics). To calibrate such a system, it is necessary to efficiently couple light from a spectral lamp into a 200 micron diameter fiber, split it into its spectral components, with 10 Angstroms or less resolution, and record it on a streak camera with 1ns or less temporal resolution.

  4. Comparative analysis of virus-derived small RNAs within cassava (Manihot esculenta Crantz) infected with cassava brown streak viruses

    PubMed Central

    Ogwok, Emmanuel; Ilyas, Muhammad; Alicai, Titus; Rey, Marie E.C.; Taylor, Nigel J.

    2016-01-01

    Infection of plant cells by viral pathogens triggers RNA silencing, an innate antiviral defense mechanism. In response to infection, small RNAs (sRNAs) are produced that associate with Argonaute (AGO)-containing silencing complexes which act to inactivate viral genomes by posttranscriptional gene silencing (PTGS). Deep sequencing was used to compare virus-derived small RNAs (vsRNAs) in cassava genotypes NASE 3, TME 204 and 60444 infected with the positive sense single-stranded RNA (+ssRNA) viruses cassava brown streak virus (CBSV) and Ugandan cassava brown streak virus (UCBSV), the causal agents of cassava brown streak disease (CBSD). An abundance of 21–24 nt vsRNAs was detected and mapped, covering the entire CBSV and UCBSV genomes. The 21 nt vsRNAs were most predominant, followed by the 22 nt class with a slight bias toward sense compared to antisense polarity, and a bias for adenine and uracil bases present at the 5′-terminus. Distribution and frequency of vsRNAs differed between cassava genotypes and viral genomes. In susceptible genotypes TME 204 and 60444, CBSV-derived sRNAs were seen in greater abundance than UCBSV-derived sRNAs. NASE 3, known to be resistant to UCBSV, accumulated negligible UCBSV-derived sRNAs but high populations of CBSV-derived sRNAs. Transcript levels of cassava homologues of AGO2, DCL2 and DCL4, which are central to the gene-silencing complex, were found to be differentially regulated in CBSV- and UCBSV-infected plants across genotypes, suggesting these proteins play a role in antiviral defense. Irrespective of genotype or viral pathogen, maximum populations of vsRNAs mapped to the cytoplasmic inclusion, P1 and P3 protein-encoding regions. Our results indicate disparity between CBSV and UCBSV host-virus interaction mechanisms, and provide insight into the role of virus-induced gene silencing as a mechanism of resistance to CBSD. PMID:26811902

  5. The MaizeGDB Genome Browser

    Technology Transfer Automated Retrieval System (TEKTRAN)

    MaizeGDB (http://www.maizegdb.org) is the community database for maize genetics and genomics. As part of an effort to develop MaizeGDB as a more sequence-centric resource, we implemented a genome browser based on information we gathered by surveying the community of maize geneticists. Based on commu...

  6. Metabolic pathway resources at MaizeGDB

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Two maize metabolic networks are available at MaizeGDB: MaizeCyc (http://maizecyc.maizegdb.org, also at Gramene) and CornCyc (http://corncyc.maizegdb.org, also at the Plant Metabolic Network). MaizeCyc was developed by Gramene, and CornCyc by the Plant Metabolic Network, both in collaboration with M...

  7. Maize variety and method of production

    DOEpatents

    Pauly, Markus; Hake, Sarah; Kraemer, Florian J

    2014-05-27

    The disclosure relates to a maize plant, seed, variety, and hybrid. More specifically, the disclosure relates to a maize plant containing a Cal-1 allele, whose expression results in increased cell wall-derived glucan content in the maize plant. The disclosure also relates to crossing inbreds, varieties, and hybrids containing the Cal-1 allele to produce novel types and varieties of maize plants.

  8. Genetic erosion in maize's center of origin.

    PubMed

    Dyer, George A; López-Feldman, Alejandro; Yúnez-Naude, Antonio; Taylor, J Edward

    2014-09-30

    Crop genetic diversity is an indispensable resource for farmers and professional breeders responding to changing climate, pests, and diseases. Anecdotal appraisals in centers of crop origin have suggested serious threats to this diversity for over half a century. However, a nationwide inventory recently found all maize races previously described for Mexico, including some formerly considered nearly extinct. A flurry of social studies seems to confirm that farmers maintain considerable diversity. Here, we compare estimates of maize diversity from case studies over the past 15 y with nationally and regionally representative matched longitudinal data from farmers across rural Mexico. Our findings reveal an increasing bias in inferences based on case study results and widespread loss of diversity. Cross-sectional, case study data suggest that farm-level richness has increased by 0.04 y(-1) nationwide; however, direct estimates using matched longitudinal data reveal that richness dropped -0.04 y(-1) between 2002 and 2007, from 1.43 to 1.22 varieties per farm. Varietal losses occurred across regions and altitudinal zones, and regardless of farm turnover within the sector. Extinction of local maize populations may not have resulted in an immediate loss of alleles, but low varietal richness and changes in maize's metapopulation dynamics may prevent farmers from accessing germplasm suitable to a rapidly changing climate. Declining yields could then lead farmers to leave the sector and result in a further loss of diversity. Similarities in research approaches across crops suggest that methodological biases could conceal a loss of diversity at other centers of crop origin.

  9. System for photometric calibration of optoelectronic imaging devices especially streak cameras

    DOEpatents

    Boni, Robert; Jaanimagi, Paul

    2003-11-04

    A system for the photometric calibration of streak cameras and similar imaging devices provides a precise knowledge of the camera's flat-field response as well as a mapping of the geometric distortions. The system provides the flat-field response, representing the spatial variations in the sensitivity of the recorded output, with a signal-to-noise ratio (SNR) greater than can be achieved in a single submicrosecond streak record. The measurement of the flat-field response is carried out by illuminating the input slit of the streak camera with a signal that is uniform in space and constant in time. This signal is generated by passing a continuous wave source through an optical homogenizer made up of a light pipe or pipes in which the illumination typically makes several bounces before exiting as a spatially uniform source field. The rectangular cross-section of the homogenizer is matched to the usable photocathode area of the streak tube. The flat-field data set is obtained by using a slow streak ramp that may have a period from one millisecond (ms) to ten seconds (s), but may be nominally one second in duration. The system also provides a mapping of the geometric distortions, by spatially and temporarily modulating the output of the homogenizer and obtaining a data set using the slow streak ramps. All data sets are acquired using a CCD camera and stored on a computer, which is used to calculate all relevant corrections to the signal data sets. The signal and flat-field data sets are both corrected for geometric distortions prior to applying the flat-field correction. Absolute photometric calibration is obtained by measuring the output fluence of the homogenizer with a "standard-traceable" meter and relating that to the CCD pixel values for a self-corrected flat-field data set.

  10. Complete genome sequence of nine isolates of canna yellow streak virus reveals its relationship to the sugarcane mosaic virus (SCMV) subgroup of potyviruses.

    PubMed

    Chauhan, Ravendra P; Rajakaruna, Punsasi; Verchot, Jeanmarie

    2015-03-01

    Complete genome sequences were obtained from nine isolates of canna yellow streak virus (CaYSV). CaYSV belongs to the sugarcane mosaic virus (SCMV) subgroup of potyviruses with johnsongrass mosaic virus (JGMV) as its closest relative. Multiple sequence alignments showed a pattern of amino acid substitutions in the CP sequences, which enabled us to relate these isolates to South East Asian or European isolates. Biological characterization of CaYSV identified Nicotiana benthamiana, Chenopodium quinoa and Phaseolus vulgaris as experimental hosts. Given the popularity and global trade of cannas, a clear picture of the genetic diversity of CaYSV is critical to disease management. PMID:25567205

  11. Linear stability of optimal streaks in the log-layer of turbulent channel flows

    NASA Astrophysics Data System (ADS)

    Alizard, Frédéric

    2015-10-01

    The importance of secondary instability of streaks for the generation of vortical structures attached to the wall in the logarithmic region of turbulent channels is studied. The streaks and their linear instability are computed by solving equations associated with the organized motion that include an eddy-viscosity modeling the effect of incoherent fluctuations. Three friction Reynolds numbers, Reτ = 2000, 3000, and 5000, are investigated. For all flow cases, optimal streamwise vortices (i.e., having the highest potential for linear transient energy amplification) are used as initial conditions. Due to the lift-up mechanism, these optimal perturbations lead to the nonlinear growth of streaks. Based on a Floquet theory along the spanwise direction, we observe the onset of streak secondary instability for a wide range of spanwise wavelengths when the streak amplitude exceeds a critical value. Under neutral conditions, it is shown that streak instability modes have their energy mainly concentrated in the overlap layer and propagate with a phase velocity equal to the mean streamwise velocity of the log-layer. These neutral log-layer modes exhibit a sinuous pattern and have characteristic sizes that are proportional to the wall distance in both streamwise and spanwise directions, in agreement with the Townsend's attached eddy hypothesis (A. Townsend, the structure of turbulent shear flow, Cambridge university press, 1976 2nd edition). In particular, for a distance from the wall varying from y+ ≈ 100 (in wall units) to y ≈ 0.3h, where h is half the height of the channel, the neutral log-layer modes are self-similar with a spanwise width of λz ≈ y/0.3 and a streamwise length of λx ≈ 3λz, independently of the Reynolds number. Based on this observation, it is suggested that compact vortical structures attached to the wall can be ascribed to streak secondary instabilities. In addition, spatial distributions of fluctuating vorticity components show that the onset

  12. A grazing incidence x-ray streak camera for ultrafast, single-shot measurements

    SciTech Connect

    Feng, Jun; Engelhorn, K.; Cho, B.I.; Lee, H.J.; Greaves, M.; Weber, C.P.; Falcone, R.W.; Padmore, H. A.; Heimann, P.A.

    2010-02-18

    An ultrafast x-ray streak camera has been realized using a grazing incidence reflection photocathode. X-rays are incident on a gold photocathode at a grazing angle of 20 degree and photoemitted electrons are focused by a large aperture magnetic solenoid lens. The streak camera has high quantum efficiency, 600fs temporal resolution, and 6mm imaging length in the spectral direction. Its single shot capability eliminates temporal smearing due to sweep jitter, and allows recording of the ultrafast dynamics of samples that undergo non-reversible changes.

  13. Aflatoxin resistance in maize: what have we learned lately?

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Aflatoxin contamination of maize grain is a huge economic and health problem, causing death and increased disease burden in much of the developing world and income loss in the developed world. Despite the gravity of the problem, deployable solutions are still being sought. In the past 15 years, much...

  14. Effects of elevated [CO2 ] on maize defence against mycotoxigenic Fusarium verticillioides.

    PubMed

    Vaughan, Martha M; Huffaker, Alisa; Schmelz, Eric A; Dafoe, Nicole J; Christensen, Shawn; Sims, James; Martins, Vitor F; Swerbilow, Jay; Romero, Maritza; Alborn, Hans T; Allen, Leon Hartwell; Teal, Peter E A

    2014-12-01

    Maize is by quantity the most important C4 cereal crop; however, future climate changes are expected to increase maize susceptibility to mycotoxigenic fungal pathogens and reduce productivity. While rising atmospheric [CO2 ] is a driving force behind the warmer temperatures and drought, which aggravate fungal disease and mycotoxin accumulation, our understanding of how elevated [CO2 ] will effect maize defences against such pathogens is limited. Here we report that elevated [CO2 ] increases maize susceptibility to Fusarium verticillioides proliferation, while mycotoxin levels are unaltered. Fumonisin production is not proportional to the increase in F. verticillioides biomass, and the amount of fumonisin produced per unit pathogen is reduced at elevated [CO2 ]. Following F. verticillioides stalk inoculation, the accumulation of sugars, free fatty acids, lipoxygenase (LOX) transcripts, phytohormones and downstream phytoalexins is dampened in maize grown at elevated [CO2 ]. The attenuation of maize 13-LOXs and jasmonic acid production correlates with reduced terpenoid phytoalexins and increased susceptibility. Furthermore, the attenuated induction of 9-LOXs, which have been suggested to stimulate mycotoxin biosynthesis, is consistent with reduced fumonisin per unit fungal biomass at elevated [CO2 ]. Our findings suggest that elevated [CO2 ] will compromise maize LOX-dependent signalling, which will influence the interactions between maize and mycotoxigenic fungi. PMID:24689748

  15. Roles of Stolbur phytoplasma and Reptalus panzeri (Cixiinae, Auchenorrhyncha) in the epidemiology of Maize redness in Serbia

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Maize redness (MR), a disease causing midrib, leaf and stalk reddening and abnormal ear development in maize, has been reported from Serbia, Romania and Bulgaria for 50 years. Recent epiphytotics reduced yields by 40-90% in southern Banat, Serbia. MR was recently associated with the presence of th...

  16. Roles of Stolbur Phytoplasma and Reptalus Panzeri (Cixiinae, Auchenorrhyncha) in the Epidemiology of Maize Redness in Serbia

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Maize redness (MR), a disease causing midrib, leaf and stalk reddening and abnormal ear development in maize, has been reported from Serbia, Romania and Bulgaria for 50 years. Recent epiphytotics reduced yields by 40-90% in southern Banat, Serbia. MR was recently associated with the presence of th...

  17. A time-dependent vector field topology based on streak surfaces.

    PubMed

    Uffinger, Markus; Sadlo, Filip; Ertl, Thomas

    2013-03-01

    It was shown recently how the 2D vector field topology concept, directly applicable to stationary vector fields only, can be generalized to time-dependent vector fields by replacing the role of stream lines by streak lines. The present paper extends this concept to 3D vector fields. In traditional 3D vector field topology separatrices can be obtained by integrating stream lines from 0D seeds corresponding to critical points. We show that in our new concept, in contrast, 1D seeding constructs are required for computing streak-based separatrices. In analogy to the 2D generalization we show that invariant manifolds can be obtained by seeding streak surfaces along distinguished path surfaces emanating from intersection curves between codimension-1 ridges in the forward and reverse finite-time Lyapunov exponent (FTLE) fields. These path surfaces represent a time-dependent generalization of critical points and convey further structure in time-dependent topology of vector fields. Compared to the traditional approach based on FTLE ridges, the resulting streak manifolds ease the analysis of Lagrangian coherent structures (LCS) with respect to visual quality and computational cost, especially when time series of LCS are computed. We exemplify validity and utility of the new approach using both synthetic examples and computational fluid dynamics results.

  18. Resistance to Wheat streak mosaic virus identified in synthetic wheat lines

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Wheat streak mosaic virus (WSMV) is a significant pathogen in wheat that causes economic loss each year. WSMV is typically controlled using cultural practices such as the removal of volunteer wheat. Genetic resistance is limited. Until recently, no varieties have been available with major resista...

  19. Optical Comb Generation for Streak Camera Calibration for Inertial Confinement Fusion Experiments

    SciTech Connect

    Ronald Justin, Terence Davies, Frans Janson, Bruce Marshall, Perry Bell, Daniel Kalantar, Joseph Kimbrough, Stephen Vernon, Oliver Sweningsen

    2008-09-18

    The National Ignition Facility (NIF) at Lawrence Livermore National Laboratory (LLNL) is coming on-line to support physics experimentation for the U.S. Department of Energy (DOE) programs in Inertial Confinement Fusion (ICF) and Stockpile Stewardship (SS). Optical streak cameras are an integral part of the experimental diagnostics instrumentation at NIF. To accurately reduce streak camera data a highly accurate temporal calibration is required. This article describes a technique for simultaneously generating a precise +/- 2 ps optical marker pulse (fiducial reference) and trains of precisely timed, short-duration optical pulses (so-called “comb” pulse trains) that are suitable for the timing calibrations. These optical pulse generators are used with the LLNL optical streak cameras. They are small, portable light sources that, in the comb mode, produce a series of temporally short, uniformly spaced optical pulses, using a laser diode source. Comb generators have been produced with pulse-train repetition rates up to 10 GHz at 780 nm, and somewhat lower frequencies at 664 nm. Individual pulses can be as short as 25-ps FWHM. Signal output is via a fiber-optic connector on the front panel of the generator box. The optical signal is transported from comb generator to streak camera through multi-mode, graded-index optical fiber.

  20. Two-color spatial and temporal temperature measurements using a streaked soft x-ray imager

    NASA Astrophysics Data System (ADS)

    Moore, A. S.; Benstead, J.; Ahmed, M. F.; Morton, J.; Guymer, T. M.; Soufli, R.; Pardini, T.; Hibbard, R. L.; Bailey, C. G.; Bell, P. M.; Hau-Riege, S.; Bedzyk, M.; Shoup, M. J.; Regan, S. P.; Agliata, T.; Jungquist, R.; Schmidt, D. W.; Kot, L. B.; Garbett, W. J.; Rubery, M. S.; Skidmore, J. W.; Gullikson, E.; Salmassi, F.

    2016-11-01

    A dual-channel streaked soft x-ray imager has been designed and used on high energy-density physics experiments at the National Ignition Facility. This streaked imager creates two images of the same x-ray source using two slit apertures and a single shallow angle reflection from a nickel mirror. Thin filters are used to create narrow band pass images at 510 eV and 360 eV. When measuring a Planckian spectrum, the brightness ratio of the two images can be translated into a color-temperature, provided that the spectral sensitivity of the two images is well known. To reduce uncertainty and remove spectral features in the streak camera photocathode from this photon energy range, a thin 100 nm CsI on 50 nm Al streak camera photocathode was implemented. Provided that the spectral shape is well-known, then uncertainties on the spectral sensitivity limits the accuracy of the temperature measurement to approximately 4.5% at 100 eV.

  1. Simultaneous velocity interferometry and electronic streak photography of laser-launched plates

    SciTech Connect

    Paisley, D.L.; Stahl, D.B.; Garcia, I.A.

    1991-01-01

    Laser-launched, miniature, pseudo-one-dimensional flyer plates are evaluated by three distinct optical techniques that may be incorporated into an optical diagnostic system to give a complete understanding of the plate performance. These techniques are: velocity interferometry, streak photography, and pulsed laser stereo photography. 2 refs., 5 figs.

  2. Complete genome sequence of an emerging genotype of tobacco streak virus in the U.S.

    Technology Transfer Automated Retrieval System (TEKTRAN)

    We report the complete genome sequence of an emerging genotype of Tobacco streak virus (TSV) infecting zucchini squash in Florida (TSV_FL13-07), through deep sequencing of sRNAs and validation by Sanger sequencing. TSV_FL13-07 only shares less than 90% sequence identity in three genomic ribonucleic...

  3. A method for estimating and removing streaking artifacts in quantitative susceptibility mapping.

    PubMed

    Li, Wei; Wang, Nian; Yu, Fang; Han, Hui; Cao, Wei; Romero, Rebecca; Tantiwongkosi, Bundhit; Duong, Timothy Q; Liu, Chunlei

    2015-03-01

    Quantitative susceptibility mapping (QSM) is a novel MRI method for quantifying tissue magnetic property. In the brain, it reflects the molecular composition and microstructure of the local tissue. However, susceptibility maps reconstructed from single-orientation data still suffer from streaking artifacts which obscure structural details and small lesions. We propose and have developed a general method for estimating streaking artifacts and subtracting them from susceptibility maps. Specifically, this method uses a sparse linear equation and least-squares (LSQR)-algorithm-based method to derive an initial estimation of magnetic susceptibility, a fast quantitative susceptibility mapping method to estimate the susceptibility boundaries, and an iterative approach to estimate the susceptibility artifact from ill-conditioned k-space regions only. With a fixed set of parameters for the initial susceptibility estimation and subsequent streaking artifact estimation and removal, the method provides an unbiased estimate of tissue susceptibility with negligible streaking artifacts, as compared to multi-orientation QSM reconstruction. This method allows for improved delineation of white matter lesions in patients with multiple sclerosis and small structures of the human brain with excellent anatomical details. The proposed methodology can be extended to other existing QSM algorithms.

  4. Streaking artifact reduction for quantitative susceptibility mapping of sources with large dynamic range.

    PubMed

    Wei, Hongjiang; Dibb, Russell; Zhou, Yan; Sun, Yawen; Xu, Jianrong; Wang, Nian; Liu, Chunlei

    2015-10-01

    Quantitative susceptibility mapping (QSM) is a novel MRI technique for the measurement of tissue magnetic susceptibility in three dimensions. Although numerous algorithms have been developed to solve this ill-posed inverse problem, the estimation of susceptibility maps with a wide range of values is still problematic. In cases such as large veins, contrast agent uptake and intracranial hemorrhages, extreme susceptibility values in focal areas cause severe streaking artifacts. To enable the reduction of these artifacts, whilst preserving subtle susceptibility contrast, a two-level QSM reconstruction algorithm (streaking artifact reduction for QSM, STAR-QSM) was developed in this study by tuning a regularization parameter to automatically reconstruct both large and small susceptibility values. Compared with current state-of-the-art QSM methods, such as the improved sparse linear equation and least-squares (iLSQR) algorithm, STAR-QSM significantly reduced the streaking artifacts, whilst preserving the sharp boundaries for blood vessels of mouse brains in vivo and fine anatomical details of high-resolution mouse brains ex vivo. Brain image data from patients with cerebral hematoma and multiple sclerosis further illustrated the superiority of this method in reducing streaking artifacts caused by large susceptibility sources, whilst maintaining sharp anatomical details. STAR-QSM is implemented in STI Suite, a comprehensive shareware for susceptibility imaging and quantification.

  5. Pedicle streaking: A novel and simple aid in pedicle positioning in free tissue transfer

    PubMed Central

    Aggarwal, Aditya; Singh, Hardeep; Mahendru, Sanjay; Brajesh, Vimalendu; Singh, Sukhdeep; Khare, Ashish; Kothari, Umang; Khazanchi, Rakesh Kumar

    2015-01-01

    Introduction: The pedicle positioning in free tissue transfer is critical to its success. Long thin pedicles are especially prone to this complication where even a slight twist in the perforator can result in flap loss. Pedicles passing through the long tunnels are similarly at risk. Streaking the pedicle with methylene blue is a simple and safe method which increases the safety of free tissue transfer. Materials and Methods: Once the flap is islanded on the pedicle and the vascularity of the flap is confirmed, the pedicle is streaked with methylene blue dye at a distance of 6-7 mm. The streaking starts from the origin of the vessels and continued distally on to the under surface of flap to mark the complete course of the pedicle in alignment. The presence of streaking in some parts and not in rest indicates twist in the pedicle. Observation and Results: Four hundred and sixty five free flaps have been done at our centre in the last 5 years. The overall success rate of free flaps is 95.3% (22 free flap failures). There has not been a single case of pedicle twist leading to flap congestion and failure. Conclusion: This simple and novel method is very reliable for pedicle positioning avoiding any twist necessary for successful free tissue transfer. PMID:26933280

  6. Physiological responses of hard red winter wheat to infection by wheat streak mosaic virus

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Wheat streak mosaic virus (WSMV) causes significant yield loss in hard red winter wheat in the U.S. Southern High Plains. Despite the prevalence of this pathogen, little is known about the physiological response of wheat to WSMV infection. A 2-year study was initiated to (i) investigate the effect o...

  7. The clonal characteristics of human aortic intima. Comparison with fatty streaks and normal media.

    PubMed Central

    Pearson, T. A.; Dillman, J. M.; Heptinstall, R. H.

    1983-01-01

    The clonal characteristics of normal-appearing but thickened aortic intima were studied by the use of the isoenzymes of glucose-6-phosphate dehydrogenase (G-6-PD) as cellular markers in females heterozygous for this X-linked enzyme. Isoenzyme patterns of 133 samples of intima were compared with those of 237 samples of underlying media and with those of 58 fatty streaks dissected from the same aortas. The proportion of samples of intima and fatty streaks with monoclonal or intermediate characteristics was the same, but both had more monoclonal or intermediate samples than underlying media (P less than 0.05). However, samples of intima showed a central clustering tendency of isoenzyme values similar to that of underlying media, while values from fatty streaks showed a bimodal distribution suggesting the presence of cell populations in the process of becoming monoclonal. The data suggest that clonal proliferation may begin in normal-appearing intima but that it progresses through a fatty streak stage before proceeding to the monoclonal fibrous plaque. Images Figure 2 PMID:6624876

  8. Implications for global climate change on Mars: intriguing dark streaks and valleys-ocean boundary

    NASA Astrophysics Data System (ADS)

    Salamuniccar, G.

    While some evidences imply that Mars was for most of its history cold and dry as it is today, other evidences imply that Martian history was much warmer and richer with water. The usual arguments for the first hypothesis is the lack of carbonates in the soil and large amounts of olivine that could survive only in dry conditions. One possible explanation for carbonates is that chemical processes near Martian surface dissolved them. One possible explanation for olivine is that it was exposed to the surface after the Mars was transformed to the present cold and dry state. The other explanation for olivine is that after ejection from volcanoes, in very short time it was covered by large amount of material before it had a chance to react with water, and re-exposed recently again in cold and dry conditions (e.g. Valles Marineris case). On the other hand, not only that some evidences support warm and wet hypothesis, but also that Mars once had rivers, lakes and ocean. Common to all related with the first hypothesis is that climate conditions were the same as today during most of the Martian history. Common to the second hypothesis is that climate significantly changed at some point in time. Accordingly, it has a sense to search for evidences that global climate changed. Recently, it was presented that intriguing dark streaks imply that we are near the end of large climate change on Mars [6thMars #3204]. The first interesting thing regarding them is that there are at least three cases where newly formed dark streak is observed. This proves that process of creation of dark streaks is still going on, meaning that any hypothesis regarding dark streaks has a good chance to be confirmed in some future mission to Mars. One is that formation of dark streaks is related with melting of ground water. This in combination with local distribution of dark streaks, where new one creates where some old one was not before, implies irreversible process where such water accumulated in

  9. Detection and assignment of proteins encoded by rice black streaked dwarf fijivirus S7, S8, S9 and S10.

    PubMed

    Isogai, M; Uyeda, I; Lee, B C

    1998-06-01

    The proteins encoded by rice black streaked dwarf fijivirus (RBSDV) genomic segments 7-10 (S7-S10) were characterized. Open reading frames (ORFs) from these segments were expressed as fusion proteins in Escherichia coli. Antibodies raised against the expressed products were used as probes to determine whether the viral ORFs encode structural proteins. In Western blots, antibodies to the expressed S8 and S10 products reacted with a core capsid (65 kDa) and a major outer capsid (56 kDa) protein, respectively, while none of the antibodies to S7 and S9 products reacted with structural proteins. Antisera to RBSDV S7 ORF1 and S9 ORF1 each detected a single protein of the predicted size in total protein extracts from infected rice plants and viruliferous Laodelphax striatellus. Immunoelectron microscopy revealed that antibodies to RBSDV S7 ORF1 and RBSDV S9 ORF1 reacted with tubular structures and viroplasm, respectively, in sections of both infected maize plants and viruliferous L. striatellus. Antisera to ORF2 of S7 and S9 failed to detect any proteins in the infected tissue using either Western blotting or immuno-electron microscopic techniques.

  10. The Maize Genetics and Genomics Database. The Community Resource for Access to Diverse Maize Data1

    PubMed Central

    Lawrence, Carolyn J.; Seigfried, Trent E.; Brendel, Volker

    2005-01-01

    The Maize Genetics and Genomics Database (MaizeGDB) serves the maize (Zea mays) research community by making a wealth of genetics and genomics data available through an intuitive Web-based interface. The goals of the MaizeGDB project are 3-fold: to provide a central repository for public maize information; to present the data through the MaizeGDB Web site in a way that recapitulates biological relationships; and to provide an array of computational tools that address biological questions in an easy-to-use manner at the site. In addition to these primary tasks, MaizeGDB team members also serve the community of maize geneticists by lending technical support for community activities, including the annual Maize Genetics Conference and various workshops, teaching researchers to use both the MaizeGDB Web site and Community Curation Tools, and engaging in collaboration with individual research groups to make their unique data types available through MaizeGDB. PMID:15888678

  11. Streaking artifacts reduction in four-dimensional cone-beam computed tomography.

    PubMed

    Leng, Shuai; Zambelli, Joseph; Tolakanahalli, Ranjini; Nett, Brian; Munro, Peter; Star-Lack, Joshua; Paliwal, Bhudatt; Chen, Guang-Hong

    2008-10-01

    Cone-beam computed tomography (CBCT) using an "on-board" x-ray imaging device integrated into a radiation therapy system has recently been made available for patient positioning, target localization, and adaptive treatment planning. One of the challenges for gantry mounted image-guided radiation therapy (IGRT) systems is the slow acquisition of projections for cone-beam CT (CBCT), which makes them sensitive to any patient motion during the scans. Aiming at motion artifact reduction, four-dimensional CBCT (4D CBCT) techniques have been introduced, where a surrogate for the target's motion profile is utilized to sort the cone-beam data by respiratory phase. However, due to the limited gantry rotation speed and limited readout speed of the on-board imager, fewer than 100 projections are available for the image reconstruction at each respiratory phase. Thus, severe undersampling streaking artifacts plague 4D CBCT images. In this paper, the authors propose a simple scheme to significantly reduce the streaking artifacts. In this method, a prior image is first reconstructed using all available projections without gating, in which static structures are well reconstructed while moving objects are blurred. The undersampling streaking artifacts from static structures are estimated from this prior image volume and then can be removed from the phase images using gated reconstruction. The proposed method was validated using numerical simulations, experimental phantom data, and patient data. The fidelity of stationary and moving objects is maintained, while large gains in streak artifact reduction are observed. Using this technique one can reconstruct 4D CBCT datasets using no more projections than are acquired in a 60 s scan. At the same time, a temporal gating window as narrow as 100 ms was utilized. Compared to the conventional 4D CBCT reconstruction, streaking artifacts were reduced by 60% to 70%.

  12. Laboratory Simulations and Spectral Analyses of Recurring Slope Streaks on Mars

    NASA Astrophysics Data System (ADS)

    Wing, B.; Irvin, B.; Hibbitts, C.; Mushkin, A.

    2014-12-01

    Low albedo streaks on Martian slopes have been cited as possible evidence for present-day intermittent and repeated surface flow of water, or brine (Mushkin et al., 2010). Also termed as Recurring Slope Lineae (1), such streaks can grow, fade, and recur repeatedly on the same slopes. Although distinguishable by being darker than surrounding terrain slope streaks have no diagnostic spectral absorption features (2). A leading hypothesis is formation by multiple wetting and drying events. Laboratory investigations have previously explored this possibility (e.g 3). When wetted with brines, soils darken, but as the sample dries, it brightens again. Wetting also results in absorption bands near 1.5 and 2 microns, which are not detected in spectra of slope streaks. Additionally, dried brines of most salts such as MgSO4, or other sulfates and many chlorides are brighter than Martian soils. However, iron chlorides are a salt that have lower albedo than most other salts and may present a mechanism for darkening slope streaks without inducing a spectral absorption feature. To explore this hypothesis, we have begun to conduct experiments investigating the spectra of iron chloride chloride solutions wetting palagonite and subsequently drying under Martian atmospheric conditions. Preliminary experiments demonstrate that FeIII chloride dried onto palagonite has no absorption features in the NIR and SWIR and remains dark and red. However, these chlorides will oxidize under terrestrial conditions forming Fe2O3 as they dry. We have constructed an environmental chamber that mimics Martian oxygen fugacity though a combination of vacuum and N2 purging, allowing for sample wetting and drying while concurrently taking spectra from 0.4 to 2.4 microns. Results from this experimental setup under Martian atmospheric conditions will be presented. References: (1) McEwen et al., (2011) Science, 333, 740-743, (2) Mushkin et al., (2010) Geophys. Res. Lett., 37, L22201, doi: 10.1029/2010GL044535

  13. Effects of elevated [CO2] on maize defence against mycotoxigenic Fusarium verticillioides

    PubMed Central

    Vaughan, Martha M; Huffaker, Alisa; Schmelz, Eric A; Dafoe, Nicole J; Christensen, Shawn; Sims, James; Martins, Vitor F; Swerbilow, Jay; Romero, Maritza; Alborn, Hans T; Allen, Leon HARTWELL; Teal, Peter EA

    2014-01-01

    Maize is by quantity the most important C4 cereal crop; however, future climate changes are expected to increase maize susceptibility to mycotoxigenic fungal pathogens and reduce productivity. While rising atmospheric [CO2] is a driving force behind the warmer temperatures and drought, which aggravate fungal disease and mycotoxin accumulation, our understanding of how elevated [CO2] will effect maize defences against such pathogens is limited. Here we report that elevated [CO2] increases maize susceptibility to Fusarium verticillioides proliferation, while mycotoxin levels are unaltered. Fumonisin production is not proportional to the increase in F. verticillioides biomass, and the amount of fumonisin produced per unit pathogen is reduced at elevated [CO2]. Following F. verticillioides stalk inoculation, the accumulation of sugars, free fatty acids, lipoxygenase (LOX) transcripts, phytohormones and downstream phytoalexins is dampened in maize grown at elevated [CO2]. The attenuation of maize 13-LOXs and jasmonic acid production correlates with reduced terpenoid phytoalexins and increased susceptibility. Furthermore, the attenuated induction of 9-LOXs, which have been suggested to stimulate mycotoxin biosynthesis, is consistent with reduced fumonisin per unit fungal biomass at elevated [CO2]. Our findings suggest that elevated [CO2] will compromise maize LOX-dependent signalling, which will influence the interactions between maize and mycotoxigenic fungi. Elevated [CO2] increases maize susceptibility to Fusarium verticillioides proliferation but mycotoxin levels are unaltered. The attenuation of maize 13-LOXs and JA production correlates with reduced terpenoid phytoalexins and increased susceptibility. Furthermore, the attenuated induction of 9-LOXs, which have been suggested to stimulate mycotoxin biosynthesis, is consistent with reduced fumonisin per unit fungal biomass at elevated [CO2]. PMID:24689748

  14. Improving the off-axis spatial resolution and dynamic range of the NIF X-ray streak cameras (invited)

    NASA Astrophysics Data System (ADS)

    MacPhee, A. G.; Dymoke-Bradshaw, A. K. L.; Hares, J. D.; Hassett, J.; Hatch, B. W.; Meadowcroft, A. L.; Bell, P. M.; Bradley, D. K.; Datte, P. S.; Landen, O. L.; Palmer, N. E.; Piston, K. W.; Rekow, V. V.; Hilsabeck, T. J.; Kilkenny, J. D.

    2016-11-01

    We report simulations and experiments that demonstrate an increase in spatial resolution of the NIF core diagnostic x-ray streak cameras by at least a factor of two, especially off axis. A design was achieved by using a corrector electron optic to flatten the field curvature at the detector plane and corroborated by measurement. In addition, particle in cell simulations were performed to identify the regions in the streak camera that contribute the most to space charge blurring. These simulations provide a tool for convolving synthetic pre-shot spectra with the instrument function so signal levels can be set to maximize dynamic range for the relevant part of the streak record.

  15. Influence of rice black streaked dwarf virus on the ecological fitness of non-vector planthopper Nilaparvata lugens (Hemiptera: Delphacidae).

    PubMed

    Xu, Hong-Xing; He, Xiao-Chan; Zheng, Xu-Song; Yang, Ya-Jun; Lu, Zhong-Xian

    2014-08-01

    Rice black streak dwarf virus (RBSDV) is transmitted by the small brown planthopper (SBPH), Laodelphax striatellus (Fallen). Non-vector rice brown planthopper (BPH), Nilaparvata lugens (Stål), shares the same host rice plants with SBPH in paddy fields. The changes in nutritional composition of rice plants infected by RBSDV and the ecological fitness of BPH feeding on the infected plants were studied under both artificial climate chamber and field conditions. Contents of 16 detected amino acids and soluble sugar in RBSDV infected rice plants were higher than those in the healthy ones. On the diseased plants BPH had significantly higher nymphal survival rates, nymphal duration of the males, weight of the female adults, as well as egg hatchability compared to BPH being fed on healthy plants. However, there was no obvious difference in female nymph duration, longevity and fecundity. Defense enzymes (superoxidase dismutase, SOD and catalase, CAT) and detoxifying enzymes (carboxylesterase, CAE and glutathione S-transferase, GST) in BPH adults fed on diseased plants had markedly higher activities. The results indicate rice plants infected by RBSDV improved the ecological fitness of the brown planthopper, a serious pest but not a transmitter of the RBSDV virus.

  16. Influence of rice black streaked dwarf virus on the ecological fitness of non-vector planthopper Nilaparvata lugens (Hemiptera: Delphacidae).

    PubMed

    Xu, Hong-Xing; He, Xiao-Chan; Zheng, Xu-Song; Yang, Ya-Jun; Lu, Zhong-Xian

    2014-08-01

    Rice black streak dwarf virus (RBSDV) is transmitted by the small brown planthopper (SBPH), Laodelphax striatellus (Fallen). Non-vector rice brown planthopper (BPH), Nilaparvata lugens (Stål), shares the same host rice plants with SBPH in paddy fields. The changes in nutritional composition of rice plants infected by RBSDV and the ecological fitness of BPH feeding on the infected plants were studied under both artificial climate chamber and field conditions. Contents of 16 detected amino acids and soluble sugar in RBSDV infected rice plants were higher than those in the healthy ones. On the diseased plants BPH had significantly higher nymphal survival rates, nymphal duration of the males, weight of the female adults, as well as egg hatchability compared to BPH being fed on healthy plants. However, there was no obvious difference in female nymph duration, longevity and fecundity. Defense enzymes (superoxidase dismutase, SOD and catalase, CAT) and detoxifying enzymes (carboxylesterase, CAE and glutathione S-transferase, GST) in BPH adults fed on diseased plants had markedly higher activities. The results indicate rice plants infected by RBSDV improved the ecological fitness of the brown planthopper, a serious pest but not a transmitter of the RBSDV virus. PMID:23956237

  17. Inbreeding drives maize centromere evolution

    PubMed Central

    Schneider, Kevin L.; Xie, Zidian; Wolfgruber, Thomas K.; Presting, Gernot G.

    2016-01-01

    Functional centromeres, the chromosomal sites of spindle attachment during cell division, are marked epigenetically by the centromere-specific histone H3 variant cenH3 and typically contain long stretches of centromere-specific tandem DNA repeats (∼1.8 Mb in maize). In 23 inbreds of domesticated maize chosen to represent the genetic diversity of maize germplasm, partial or nearly complete loss of the tandem DNA repeat CentC precedes 57 independent cenH3 relocation events that result in neocentromere formation. Chromosomal regions with newly acquired cenH3 are colonized by the centromere-specific retrotransposon CR2 at a rate that would result in centromere-sized CR2 clusters in 20,000–95,000 y. Three lines of evidence indicate that CentC loss is linked to inbreeding, including (i) CEN10 of temperate lineages, presumed to have experienced a genetic bottleneck, contain less CentC than their tropical relatives; (ii) strong selection for centromere-linked genes in domesticated maize reduced diversity at seven of the ten maize centromeres to only one or two postdomestication haplotypes; and (iii) the centromere with the largest number of haplotypes in domesticated maize (CEN7) has the highest CentC levels in nearly all domesticated lines. Rare recombinations introduced one (CEN2) or more (CEN5) alternate CEN haplotypes while retaining a single haplotype at domestication loci linked to these centromeres. Taken together, this evidence strongly suggests that inbreeding, favored by postdomestication selection for centromere-linked genes affecting key domestication or agricultural traits, drives replacement of the tandem centromere repeats in maize and other crop plants. Similar forces may act during speciation in natural systems. PMID:26858403

  18. Inbreeding drives maize centromere evolution.

    PubMed

    Schneider, Kevin L; Xie, Zidian; Wolfgruber, Thomas K; Presting, Gernot G

    2016-02-23

    Functional centromeres, the chromosomal sites of spindle attachment during cell division, are marked epigenetically by the centromere-specific histone H3 variant cenH3 and typically contain long stretches of centromere-specific tandem DNA repeats (∼1.8 Mb in maize). In 23 inbreds of domesticated maize chosen to represent the genetic diversity of maize germplasm, partial or nearly complete loss of the tandem DNA repeat CentC precedes 57 independent cenH3 relocation events that result in neocentromere formation. Chromosomal regions with newly acquired cenH3 are colonized by the centromere-specific retrotransposon CR2 at a rate that would result in centromere-sized CR2 clusters in 20,000-95,000 y. Three lines of evidence indicate that CentC loss is linked to inbreeding, including (i) CEN10 of temperate lineages, presumed to have experienced a genetic bottleneck, contain less CentC than their tropical relatives; (ii) strong selection for centromere-linked genes in domesticated maize reduced diversity at seven of the ten maize centromeres to only one or two postdomestication haplotypes; and (iii) the centromere with the largest number of haplotypes in domesticated maize (CEN7) has the highest CentC levels in nearly all domesticated lines. Rare recombinations introduced one (CEN2) or more (CEN5) alternate CEN haplotypes while retaining a single haplotype at domestication loci linked to these centromeres. Taken together, this evidence strongly suggests that inbreeding, favored by postdomestication selection for centromere-linked genes affecting key domestication or agricultural traits, drives replacement of the tandem centromere repeats in maize and other crop plants. Similar forces may act during speciation in natural systems. PMID:26858403

  19. Angioid Streaks in Types I and II Congenital Dyserythropoietic Anaemia (CDA).

    PubMed

    Frimmel, S; Kniestedt, C

    2016-04-01

    Background. Angioid streaks (AS) are visible irregular breaks in Bruch's membrane, extending radially from the optic nerve head and with overlaying atrophic retinal pigment epithelium. In 50 % of patients, AS are associated with Pseudoxanthoma elasticum, Ehlers-Danlos syndrome, sickle cell anaemia or Paget's disease. In 50 % of patients, AS are idiopathic. Congenital Dyserythropoietic Anaemia (CDA) is a rare, inherited disorder of ineffective erythropoiesis with morphologically abnormal erythroblasts. CDA was first recognised as a separate entity in 1968 and classified into three main groups. CDA demographics have identified 614 known families and > 700 cases worldwide. A few case reports of AS in CDA I and III have been published, but there is no report of AS in CDA II, the most frequent of the CDAs, as well no follow-up. History and Signs. 8 eyes of 4 CDA patients were examined. The CDA I patients were a 46 year old man and a 52 year old woman. They were first seen in 2009 and followed up for 9 and 11 months, respectively. The 2 female CDA II patients were seen in 2010 and were aged 35 and 42 years at first presentation. Vision, Amsler grid, optical coherence tomography (OCT), fundus pictures and fluorescent angiography were performed. Blood was drawn for neutrophil elastase determination (ELA2). Therapy and Outcome. All patients showed bilateral AS. Mean best corrected visual acuity was 20/20 without metamorphopsia and with normal OCT. During the follow-up period, no progression occurred. No choroidal neovascularisation (CNV) was detected. ELA2 serum levels were normal. Conclusions. This is the first report of AS in CDA II and the first follow-up in CDA I. No evidence of progression was seen within this period of time. Longer follow-up is needed to detect whether AS progresses. All patients with AS should be seen by an ophthalmologist on a regular basis. The risk of CNV is given. Therapy is possible and the outcome is best if the CNV is recognised and

  20. MaizeGDB's New Genome Browser Project

    Technology Transfer Automated Retrieval System (TEKTRAN)

    MaizeGDB (http://www.maizegdb.org) is the community database for maize genetics and genomics. Based upon the 2006 MaizeGDB Working Group Report (available at http://www.maizegdb.org/working_group.php) and the Allerton Report (http://www.maizegdb.org/AllertonReport.doc), it has become evident that th...

  1. The MaizeGDB Genome Browser

    Technology Transfer Automated Retrieval System (TEKTRAN)

    MaizeGDB (http://www.maizegdb.org) is the community database for maize genetics and genomics. As part of a larger effort to develop MaizeGDB into a more sequence-centric resource, we recently implemented a genome browser. The GBrowse platform was chosen for this endeavor based on results of a survey...

  2. MaizeGDB: New tools and resource

    Technology Transfer Automated Retrieval System (TEKTRAN)

    MaizeGDB, the USDA-ARS genetics and genomics database, is a highly curated, community-oriented informatics service to researchers focused on the crop plant and model organism Zea mays. MaizeGDB facilitates maize research by curating, integrating, and maintaining a database that serves as the central...

  3. The Genetic Architecture of Maize Flowering Time

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Flowering time is the key trait controlling adaptation of plants to their local environment, and, in an outcrossing species like maize, it is a complex trait. Variation for this complex trait was dissected in maize using a novel set of 5000 recombinant inbred lines (maize Nested Association Mapping...

  4. Temporal resolution limit estimation of x-ray streak cameras using a CsI photocathode

    SciTech Connect

    Li, Xiang; Gu, Li; Zong, Fangke; Zhang, Jingjin; Yang, Qinlao

    2015-08-28

    A Monte Carlo model is developed and implemented to calculate the characteristics of x-ray induced secondary electron (SE) emission from a CsI photocathode used in an x-ray streak camera. Time distributions of emitted SEs are investigated with an incident x-ray energy range from 1 to 30 keV and a CsI thickness range from 100 to 1000 nm. Simulation results indicate that SE time distribution curves have little dependence on the incident x-ray energy and CsI thickness. The calculated time dispersion within the CsI photocathode is about 70 fs, which should be the temporal resolution limit of x-ray streak cameras that use CsI as the photocathode material.

  5. A novel compact high speed x-ray streak camera (invited).

    PubMed

    Hares, J D; Dymoke-Bradshaw, A K L

    2008-10-01

    Conventional in-line high speed streak cameras have fundamental issues when their performance is extended below a picosecond. The transit time spread caused by both the spread in the photoelectron (PE) "birth" energy and space charge effects causes significant electron pulse broadening along the axis of the streak camera and limits the time resolution. Also it is difficult to generate a sufficiently large sweep speed. This paper describes a new instrument in which the extraction electrostatic field at the photocathode increases with time, converting time to PE energy. A uniform magnetic field is used to measure the PE energy, and thus time, and also focuses in one dimension. Design calculations are presented for the factors limiting the time resolution. With our design, subpicosecond resolution with high dynamic range is expected. PMID:19044647

  6. A novel compact high speed x-ray streak camera (invited)

    SciTech Connect

    Hares, J. D.; Dymoke-Bradshaw, A. K. L.

    2008-10-15

    Conventional in-line high speed streak cameras have fundamental issues when their performance is extended below a picosecond. The transit time spread caused by both the spread in the photoelectron (PE) ''birth'' energy and space charge effects causes significant electron pulse broadening along the axis of the streak camera and limits the time resolution. Also it is difficult to generate a sufficiently large sweep speed. This paper describes a new instrument in which the extraction electrostatic field at the photocathode increases with time, converting time to PE energy. A uniform magnetic field is used to measure the PE energy, and thus time, and also focuses in one dimension. Design calculations are presented for the factors limiting the time resolution. With our design, subpicosecond resolution with high dynamic range is expected.

  7. A pulse-front-tilt-compensated streaked optical spectrometer with high throughput and picosecond time resolution

    NASA Astrophysics Data System (ADS)

    Katz, J.; Boni, R.; Rivlis, R.; Muir, C.; Froula, D. H.

    2016-11-01

    A high-throughput, broadband optical spectrometer coupled to the Rochester optical streak system equipped with a Photonis P820 streak tube was designed to record time-resolved spectra with 1-ps time resolution. Spectral resolution of 0.8 nm is achieved over a wavelength coverage range of 480 to 580 nm, using a 300-groove/mm diffraction grating in conjunction with a pair of 225-mm-focal-length doublets operating at an f/2.9 aperture. Overall pulse-front tilt across the beam diameter generated by the diffraction grating is reduced by preferentially delaying discrete segments of the collimated input beam using a 34-element reflective echelon optic. The introduced delay temporally aligns the beam segments and the net pulse-front tilt is limited to the accumulation across an individual sub-element. The resulting spectrometer design balances resolving power and pulse-front tilt while maintaining high throughput.

  8. Route to One Atomic Unit of Time: Development of a Broadband Attosecond Streak Camera

    NASA Astrophysics Data System (ADS)

    Zhao, Kun; Zhang, Qi; Chini, Michael; Chang, Zenghu

    A new attosecond streak camera based on a three-meter-long magnetic-bottle time-of-flight electron spectrometer (MBES) is developed. The temporal resolution of the photoelectron detection system is measured to be better than 250 ps, which is sufficient to achieve an energy resolution of 0.5 eV at 150 eV photoelectron energy. In preliminary experiments, a 94-as isolated XUV pulse was generated and characterized. With a new algorithm to retrieve the amplitude and phase of XUV pulses (PROOF—phase retrieval by omega oscillation filtering), the attosecond streak camera will be able to characterize isolated attosecond pulses as short as one atomic unit of time (25 as).

  9. High-Time-Resolution Streak Photographic System Equipped with Propellant Guns for Hugoniot Measurement of Solids

    NASA Astrophysics Data System (ADS)

    Mashimo, Tsutomu; Zhang, Yuyang; Uchino, Masakazu; Nakamura, Akira

    2009-09-01

    The high-time-resolution streak photographic system equipped with a powder gun and a two-stage light gas gun has been constructed for the Hugoniot measurement of solids at pressures up to >300 GPa. For this system, a compact rotating-mirror-type streak camera and a long-pulsed dye laser with no Q-switch were produced. A time resolution higher than 1 ns was achieved by using a 2-µm-wide slit of the camera formed using the laser. The shock velocity and particle velocity of steady shock waves of the materials with a shock velocity of ˜6 km/s can be measured by the inclined-mirror method with the basic errors of 0.2 and 0.1-0.2%, and 0.2 and 0.35-0.45% for symmetrical and asymmetrical impact, respectively, depending on shock velocity and impact velocity.

  10. Mach-zehnder based optical marker/comb generator for streak camera calibration

    SciTech Connect

    Miller, Edward Kirk

    2015-03-03

    This disclosure is directed to a method and apparatus for generating marker and comb indicia in an optical environment using a Mach-Zehnder (M-Z) modulator. High speed recording devices are configured to record image or other data defining a high speed event. To calibrate and establish time reference, the markers or combs are indicia which serve as timing pulses (markers) or a constant-frequency train of optical pulses (comb) to be imaged on a streak camera for accurate time based calibration and time reference. The system includes a camera, an optic signal generator which provides an optic signal to an M-Z modulator and biasing and modulation signal generators configured to provide input to the M-Z modulator. An optical reference signal is provided to the M-Z modulator. The M-Z modulator modulates the reference signal to a higher frequency optical signal which is output through a fiber coupled link to the streak camera.

  11. Extra-embryonic Wnt3 regulates the establishment of the primitive streak in mice

    PubMed Central

    Yoon, Yeonsoo; Huang, Tingting; Tortelote, Giovane G.; Wakamiya, Maki; Hadjantonakis, Anna-Katerina; Behringer, Richard R.; Rivera-Pérez, Jaime A.

    2015-01-01

    The establishment of the head to tail axis at early stages of development is a fundamental aspect of vertebrate embryogenesis. In mice, experimental embryology, genetics and expression studies have suggested that the visceral endoderm, an extra-embryonic tissue, plays an important role in anteroposterior axial development. Here we show that absence of Wnt3 in the posterior visceral endoderm leads to delayed formation of the primitive streak and that interplay between anterior and posterior visceral endoderm restricts the position of the primitive streak. Embryos lacking Wnt3 in the visceral endoderm, however, appear normal by E9.5. Our results suggest a model for axial development in which multiple signals are required for anteroposterior axial development in mammals. PMID:25907228

  12. Protocol for observing molecular dipole excitations by attosecond self-streaking

    NASA Astrophysics Data System (ADS)

    Wachter, Georg; Nagele, Stefan; Sato, Shunsuke A.; Pazourek, Renate; Wais, Michael; Lemell, Christoph; Tong, Xiao-Min; Yabana, Kazuhiro; Burgdörfer, Joachim

    2015-12-01

    We propose a protocol to probe the ultrafast evolution and dephasing of coherent electronic excitation in molecules in the time domain by the intrinsic streaking field generated by the molecule itself. Coherent electronic motion in the endohedral fullerene Ne@C 60 is initiated by a moderately intense femtosecond UV-visible pulse leading to coherent oscillations of the molecular dipole moment that persist after the end of the laser pulse. The resulting time-dependent molecular near field is probed through the momentum modulation of photoemission from the central neon atom by a time-delayed attosecond XUV pulse. Our ab initio time-dependent density functional theory and classical trajectory simulations predict that this self-streaking signal accurately traces the molecular dipole oscillations in real time. We discuss the underlying processes and give an analytical model that captures the essence of our ab initio simulations.

  13. Streaked radiography of an irradiated foam sample on the National Ignition Facility

    SciTech Connect

    Cooper, A. B. R.; Schneider, M. B.; MacLaren, S. A.; Young, P. E.; Hsing, W. W.; Seugling, R.; Foord, M. E.; Sain, J. D.; May, M. J.; Marrs, R. E.; Maddox, B. R.; Lu, K.; Dodson, K.; Smalyuk, V.; Moore, A. S.; Graham, P.; Foster, J. M.; Back, C. A.; Hund, J. F.

    2013-03-15

    Streaked x-ray radiography images of annular patterns in an evolving tantalum oxide foam under the influence of a driven, subsonic radiation wave were obtained on the National Ignition Facility. This is the first successful radiography measurement of the evolution of well-defined foam features under a driven, subsonic wave in the diffusive regime. A continuous record of the evolution was recorded on an x-ray streak camera, using a slot-apertured point-projection backlighter with an 8 ns nickel source (7.9 keV). Radiography images were obtained for four different annular patterns, which were corrected using a source-dependent flat-field image. The evolution of the foam features was well-modeled using the 3D KULL radiation hydrodynamics code. This experimental and modeling platform can be modified for scaled high-energy-density laboratory astrophysics experiments.

  14. Motion Streaks Do Not Influence the Perceived Position of Stationary Flashed Objects

    PubMed Central

    Pavan, Andrea; Bellacosa Marotti, Rosilari

    2012-01-01

    In the present study, we investigated whether motion streaks, produced by fast moving dots Geisler 1999, distort the positional map of stationary flashed objects producing the well-known motion-induced position shift illusion (MIPS). The illusion relies on motion-processing mechanisms that induce local distortions in the positional map of the stimulus which is derived by shape-processing mechanisms. To measure the MIPS, two horizontally offset Gaussian blobs, placed above and below a central fixation point, were flashed over two fields of dots moving in opposite directions. Subjects judged the position of the top Gaussian blob relative to the bottom one. The results showed that neither fast (motion streaks) nor slow moving dots influenced the perceived spatial position of the stationary flashed objects, suggesting that background motion does not interact with the shape-processing mechanisms involved in MIPS. PMID:22645464

  15. Upgrades to the VISAR-streaked optical pyrometer (SOP) system on NIF

    NASA Astrophysics Data System (ADS)

    Manuel, A. M.; Millot, M.; Seppala, L. G.; Frieders, G.; Zeid, Z.; Christensen, K.; Celliers, P. M.

    2015-08-01

    The Velocity Interferometer System for Any Reflector (VISAR) is a critical diagnostic in Inertial Confinement Fusion and High Energy Density research as it has the ability to track shock fronts or interfaces moving 0.1-100 km/s with great accuracy. At the National Ignition Facility (NIF), the VISAR has recently been used successfully for implosion tuning and equation of state measurements. However, the initial design of the companion Streaked Optical Pyrometer (SOP) to measure spectral radiance - hence shock temperature - suffers from large background levels and poor spatial resolution. We report on an upgrade to improve the spatial resolution in the 560-640nm band by using custom lenses and replacing the Dove prism with a K-mirror and implementing a gating-circuit for the streak camera to reduce background signal. We envision that upgraded SOP will provide high quality data collection matching NIF VISAR's standards.

  16. Maize, tropical (Zea mays L.).

    PubMed

    Assem, Shireen K

    2015-01-01

    Maize (Zea mays L.) is the third most important food crop globally after wheat and rice. In sub-Saharan Africa, tropical maize has traditionally been the main staple of the diet; 95 % of the maize grown is consumed directly as human food and as an important source of income for the resource-poor rural population. The biotechnological approach to engineer biotic and abiotic traits implies the availability of an efficient plant transformation method. The production of genetically transformed plants depends both on the ability to integrate foreign genes into target cells and the efficiency with which plants are regenerated. Maize transformation and regeneration through immature embryo culture is the most efficient system to regenerate normal transgenic plants. However, this system is highly genotype dependent. Genotypes adapted to tropic areas are difficult to regenerate. Therefore, transformation methods used with model genotypes adapted to temperate areas are not necessarily efficient with tropical lines. Agrobacterium-mediated transformation is the method of choice since it has been first achieved in 1996. In this report, we describe a transformation method used successfully with several tropical maize lines. All the steps of transformation and regeneration are described in details. This protocol can be used with a wide variety of tropical lines. However, some modifications may be needed with recalcitrant lines.

  17. Instability of streaks in pipe flow of shear-thinning fluids.

    PubMed

    López Carranza, S N; Jenny, M; Nouar, C

    2013-08-01

    This study is motivated by recent experimental results dealing with the transition to turbulence in a pipe flow of shear-thinning fluids, where a streaky flow with an azimuthal wave number n=1 is observed in the transitional regime. Here, a linear stability analysis of pipe flow of shear-thinning fluids modulated azimuthally by finite amplitude streaks is performed. The shear-thinning behavior of the fluid is described by the Carreau model. The streaky base flows considered are obtained from two-dimensional direct numerical simulation using finite amplitude longitudinal rolls as the initial condition and by extracting the velocity field at time t(max), where the amplitude of the streaks reaches its maximum, denoted by A(max). It is found that the amplitude A(max) increases with increasing Reynolds number as well as with increasing amplitude E(0) of the initial longitudinal rolls. For sufficiently large streaks amplitude, streamwise velocity profiles develop inflection points, leading to instabilities. Depending on the threshold amplitude A(c), two different modes may trigger the instability of the streaks. If A(c) exceeds approximately 41.5% of the centerline velocity, the instability mode is located near the axis of the pipe, i.e., it is a "center mode." For weaker amplitude A(c), the instability mode is located near the pipe wall, in the region of highest wall normal shear, i.e., it is a "wall mode." The threshold amplitude A(c) decreases with increasing shear-thinning effects. The energy equation analysis indicates that (i) wall modes are driven mainly by the work of the Reynolds stress against the wall normal shear and (ii) for center modes, the contribution of the normal wall shear remains dominant; however, it is noted that the contribution of the Reynolds stress against the azimuthal shear increases with increasing shear-thinning effects.

  18. Changes Over a Martian Year -- New Dark Slope Streaks in Lycus Sucli

    NASA Technical Reports Server (NTRS)

    2001-01-01

    Now in its Extended Mission, Mars Global Surveyor (MGS) is into its second Mars year of systematic observations of the red planet. With the Extended Mission slated to run through April 2002, the Mars Orbiter Camera (MOC) is being used, among other things, to look for changes that have occurred in the past martian year. Because Mars is farther from the Sun than Earth, its year is longer--about 687 Earth days.

    The two pictures shown here cover the same portion of Lycus Sulci, a rugged, ridged terrain north of the giant Olympus Mons volcano. The interval between the pictures span 92% of a martian year (August 2, 1999 to April 27, 2001). Dark streaks considered to result from the avalanching of dry, fine, bright dust are seen in both images. The disruption of the surface by the avalanching materials is thought to cause them to appear darker than their surroundings, just as the 1997 bouncing of Mars Pathfinder's airbags and the tire tracks made by the Sojourner rover left darkened markings indicating where the martian soil had been disrupted and disturbed. The arrows in the April 2001 picture indicate eight new streaks that formed on these slopes in Lycus Sulci since August 1999. These observations suggest that a new streak forms approximately once per martian year per kilometer (about 0.62 miles) along a slope.

    In both images, north is toward the top/upper right and sunlight illuminates each from the left. Dark (as well bright) slope streaks are most common in the dust-covered martian regions of Tharsis, Arabia, and Elysium.

  19. High-Speed Observer: Automated Streak Detection for the Aerospike Engine

    NASA Technical Reports Server (NTRS)

    Rieckhoff, T. J.; Covan, M. A.; OFarrell, J. M.

    2001-01-01

    A high-frame-rate digital video camera, installed on test stands at Stennis Space Center (SSC), has been used to capture images of the aerospike engine plume during test. These plume images are processed in real time to detect and differentiate anomalous plume events. Results indicate that the High-Speed Observer (HSO) system can detect anomalous plume streaking events that are indicative of aerospike engine malfunction.

  20. High temporal resolution and streak-free four-dimensional cone-beam computed tomography

    NASA Astrophysics Data System (ADS)

    Leng, Shuai; Tang, Jie; Zambelli, Joseph; Nett, Brian; Tolakanahalli, Ranjini; Chen, Guang-Hong

    2008-10-01

    Cone-beam computed tomography (CBCT) has been clinically used to verify patient position and to localize the target of treatment in image-guided radiation therapy (IGRT). However, when the chest and the upper abdomen are scanned, respiratory-induced motion blurring limits the utility of CBCT. In order to mitigate this blurring, respiratory-gated CBCT, i.e. 4D CBCT, was introduced. In 4D CBCT, the cone-beam projection data sets acquired during a gantry rotation are sorted into several respiratory phases. In these gated reconstructions, the number of projections for each respiratory phase is significantly reduced. Consequently, undersampling streaking artifacts are present in the reconstructed images, and the image contrast resolution is also significantly compromised. In this paper, we present a new method to simultaneously achieve both high temporal resolution (~100 ms) and streaking artifact-free image volumes in 4D CBCT. The enabling technique is a newly proposed image reconstruction method, i.e. prior image constrained compressed sensing (PICCS), which enables accurate image reconstruction using vastly undersampled cone-beam projections and a fully sampled prior image. Using PICCS, a streak-free image can be reconstructed from 10-20 cone-beam projections while the signal-to-noise ratio is determined by a denoising feature of the selected objective function and by the prior image, which is reconstructed using all of the acquired cone-beam projections. This feature of PICCS breaks the connection between the temporal resolution and streaking artifacts' level in 4D CBCT. Numerical simulations and experimental phantom studies have been conducted to validate the method.

  1. Complete genome sequence of an emerging genotype of tobacco streak virus in the United States.

    PubMed

    Padmanabhan, Chellappan; Gao, Shan; Li, Rugang; Zhang, Shouan; Fei, Zhangjun; Ling, Kai-Shu

    2014-01-01

    We report here the complete genome sequence of an emerging genotype of tobacco streak virus (TSV) infecting zucchini squash in Florida (TSV_FL13-07), obtained using deep sequencing of short RNAs (sRNAs) and validation by Sanger sequencing. TSV_FL13-07 shares only <90% sequence identity in all three genomic RNAs to several known U.S. isolates. PMID:25377714

  2. 2-ps Hard X-Ray Streak Camera Measurements at Sector 7 Beamline of the Advanced Photon Source

    SciTech Connect

    Chollet, M.; Ahr, B.; Walko, D.A.; Rose-Petruck, C.; Adams, B.

    2011-08-02

    A hard X-ray streak camera capable of 2-ps time resolution is in operation at the Sector 7 beamline of the Advanced Photon Source. It is used for laser-pump, X-ray probe experiments using the Ti:Sapphire femtosecond laser system installed on the beamline. This streak camera, combined with standardized and prealigned experimental setups, can perform time-resolved liquid-phase absorption spectroscopy, reflectivity, and diffraction experiments.

  3. Laser Activated Streak Camera for Measurement of Electron Pulses with Femtosecond Resolution

    NASA Astrophysics Data System (ADS)

    Zandi, Omid; Desimone, Alice; Wilkin, Kyle; Yang, Jie; Centurion, Martin

    2015-05-01

    The duration of femtosecond electron pulses used in time-resolved diffraction and microscopy experiments is challenging to measure in-situ. To overcome this problem, we have fabricated a streak camera that uses the time-varying electric field of a discharging parallel plate capacitor. The capacitor is discharged using a laser-activated GaAs photoswitch, resulting in a damped oscillation of the electric field. The delay time between the laser pulse and electron pulse is set so that the front and back halves of the bunch encounter opposite electric fields of the capacitor and are deflected in opposite directions. Thus, the electron bunch appears streaked on the detector with a length proportional to its duration. The temporal resolution of the streak camera is proportional to the maximum value of the electric field and the frequency of the discharge oscillation. The capacitor is charged by high voltage short pulses to achieve a high electric field and prevent breakdown. We have achieved an oscillation frequency in the GHz range by reducing the circuit size and hence its inductance. The camera was used to measure 100 keV electron pulses with up to a million electrons that are compressed transversely by magnetic lenses and longitudinally by an RF cavity. This work was supported mainly by the Air Force Office of Scientific Research, Ultrashort Pulse Laser Matter Interaction program, under grant # FA9550-12-1-0149.

  4. A new streaked soft x-ray imager for the National Ignition Facility

    DOE PAGES

    Benstead, J.; Moore, A. S.; Ahmed, M. F.; Morton, J.; Guymer, T. M.; Pardini, T.; Soufli, R.; Hibbard, R. L.; Bailey, C. G.; Bell, P. M.; et al

    2016-05-27

    Here, a new streaked soft x-ray imager has been designed for use on high energy-density (HED) physics experiments at the National Ignition Facility based at the Lawrence Livermore National Laboratory. This streaked imager uses a slit aperture, single shallow angle reflection from a nickel mirror, and soft x-ray filtering to, when coupled to one of the NIF’s x-ray streak cameras, record a 4× magnification, one-dimensional image of an x-ray source with a spatial resolution of less than 90 μm. The energy band pass produced depends upon the filter material used; for the first qualification shots, vanadium and silver-on-titanium filters weremore » used to gate on photon energy ranges of approximately 300–510 eV and 200–400 eV, respectively. A two-channel version of the snout is available for x-ray sources up to 1 mm and a single-channel is available for larger sources up to 3 mm. Both the one and two-channel variants have been qualified on quartz wire and HED physics target shots.« less

  5. Optical fiducial timing system for X-ray streak cameras with aluminum coated optical fiber ends

    DOEpatents

    Nilson, David G.; Campbell, E. Michael; MacGowan, Brian J.; Medecki, Hector

    1988-01-01

    An optical fiducial timing system is provided for use with interdependent groups of X-ray streak cameras (18). The aluminum coated (80) ends of optical fibers (78) are positioned with the photocathodes (20, 60, 70) of the X-ray streak cameras (18). The other ends of the optical fibers (78) are placed together in a bundled array (90). A fiducial optical signal (96), that is comprised of 2.omega. or 1.omega. laser light, after introduction to the bundled array (90), travels to the aluminum coated (82) optical fiber ends and ejects quantities of electrons (84) that are recorded on the data recording media (52) of the X-ray streak cameras (18). Since both 2.omega. and 1.omega. laser light can travel long distances in optical fiber with only a slight attenuation, the initial arial power density of the fiducial optical signal (96) is well below the damage threshold of the fused silica or other material that comprises the optical fibers (78, 90). Thus the fiducial timing system can be repeatably used over long durations of time.

  6. A new streaked soft x-ray imager for the National Ignition Facility.

    PubMed

    Benstead, J; Moore, A S; Ahmed, M F; Morton, J; Guymer, T M; Soufli, R; Pardini, T; Hibbard, R L; Bailey, C G; Bell, P M; Hau-Riege, S; Bedzyk, M; Shoup, M J; Reagan, S; Agliata, T; Jungquist, R; Schmidt, D W; Kot, L B; Garbett, W J; Rubery, M S; Skidmore, J W; Gullikson, E; Salmassi, F

    2016-05-01

    A new streaked soft x-ray imager has been designed for use on high energy-density (HED) physics experiments at the National Ignition Facility based at the Lawrence Livermore National Laboratory. This streaked imager uses a slit aperture, single shallow angle reflection from a nickel mirror, and soft x-ray filtering to, when coupled to one of the NIF's x-ray streak cameras, record a 4× magnification, one-dimensional image of an x-ray source with a spatial resolution of less than 90 μm. The energy band pass produced depends upon the filter material used; for the first qualification shots, vanadium and silver-on-titanium filters were used to gate on photon energy ranges of approximately 300-510 eV and 200-400 eV, respectively. A two-channel version of the snout is available for x-ray sources up to 1 mm and a single-channel is available for larger sources up to 3 mm. Both the one and two-channel variants have been qualified on quartz wire and HED physics target shots. PMID:27250473

  7. Altitude Starting Characteristics of an Afterburner with Autoignition and Hot-streak Ignition

    NASA Technical Reports Server (NTRS)

    Renas, P E; Jansen, E T; Harvey, R W , Sr

    1953-01-01

    An investigation was conducted in an altitude test chamber at the NACA Lewis Laboratory to determine the altitude starting characteristics of an afterburner with autoignition and with hot-streak ignition. Transient afterburner ignition data were obtained over a range of altitudes from 30,000 to 50,000 feet at a flight Mach number of 0.60. Afterburner ignition with a torch igniter located axially at approximately the midpoint of the combustion chamber was possible over the entire range, but ignition ignition with a torch igniter located in the transition section 1 5/8 inches upstream of the turbine stators proved unsatisfactory at an altitude of 50,000 feet due to the inability to obtain flame through the turbine. Increasing the afterburner-inlet total pressure at a constant afterburner fuel-air ratio decreased the afterburner ignition time. Hot-streak ignition was possible within 2 seconds after the time required to obtain the preset, normal afterburner fuel pressure, whereas autoignition required 4 to 7 seconds for the range of altitudes investigated. Following the ignition there was a period of oscillatory operation existing in the engine-afterburner before steady-state operation was attained. The time required for steady-state stable operation decreased as afterburner inlet total pressure increased. The duration of oscillations also decreased with hot-streak ignition because the fuel-air mixture was ignited before a large volume of combustible mixture was accumulated in the afterburner.

  8. Development of intelligent control system for X-ray streak camera in diagnostic instrument manipulator

    NASA Astrophysics Data System (ADS)

    Pei, Chengquan; Wu, Shengli; Tian, Jinshou; Liu, Zhen; Fang, Yuman; Gao, Guilong; Liang, Lingliang; Wen, Wenlong

    2015-11-01

    An intelligent control system for an X ray streak camera in a diagnostic instrument manipulator (DIM) is proposed and implemented, which can control time delay, electric focusing, image gain adjustment, switch of sweep voltage, acquiring environment parameters etc. The system consists of 16 A/D converters and 16 D/A converters, a 32-channel general purpose input/output (GPIO) and two sensors. An isolated DC/DC converter with multi-outputs and a single mode fiber were adopted to reduce the interference generated by the common ground among the A/D, D/A and I/O. The software was designed using graphical programming language and can remotely access the corresponding instrument from a website. The entire intelligent control system can acquire the desirable data at a speed of 30 Mb/s and store it for later analysis. The intelligent system was implemented on a streak camera in a DIM and it shows a temporal resolution of 11.25 ps, spatial distortion of less than 10% and dynamic range of 279:1. The intelligent control system has been successfully used in a streak camera to verify the synchronization of multi-channel laser on the Inertial Confinement Fusion Facility.

  9. High-Throughput Single-Cell Cultivation on Microfluidic Streak Plates

    PubMed Central

    Jiang, Cheng-Ying; Dong, Libing; Zhao, Jian-Kang; Hu, Xiaofang; Shen, Chaohua; Qiao, Yuxin; Zhang, Xinyue; Wang, Yapei; Ismagilov, Rustem F.

    2016-01-01

    This paper describes the microfluidic streak plate (MSP), a facile method for high-throughput microbial cell separation and cultivation in nanoliter sessile droplets. The MSP method builds upon the conventional streak plate technique by using microfluidic devices to generate nanoliter droplets that can be streaked manually or robotically onto petri dishes prefilled with carrier oil for cultivation of single cells. In addition, chemical gradients could be encoded in the droplet array for comprehensive dose-response analysis. The MSP method was validated by using single-cell isolation of Escherichia coli and antimicrobial susceptibility testing of Pseudomonas aeruginosa PAO1. The robustness of the MSP work flow was demonstrated by cultivating a soil community that degrades polycyclic aromatic hydrocarbons. Cultivation in droplets enabled detection of the richest species diversity with better coverage of rare species. Moreover, isolation and cultivation of bacterial strains by MSP led to the discovery of several species with high degradation efficiency, including four Mycobacterium isolates and a previously unknown fluoranthene-degrading Blastococcus species. PMID:26850294

  10. Signal-to-noise performance analysis of streak tube imaging lidar systems. I. Cascaded model.

    PubMed

    Yang, Hongru; Wu, Lei; Wang, Xiaopeng; Chen, Chao; Yu, Bing; Yang, Bin; Yuan, Liang; Wu, Lipeng; Xue, Zhanli; Li, Gaoping; Wu, Baoning

    2012-12-20

    Streak tube imaging lidar (STIL) is an active imaging system using a pulsed laser transmitter and a streak tube receiver to produce 3D range and intensity imagery. The STIL has recently attracted a great deal of interest and attention due to its advantages of wide azimuth field-of-view, high range and angle resolution, and high frame rate. This work investigates the signal-to-noise performance of STIL systems. A theoretical model for characterizing the signal-to-noise performance of the STIL system with an internal or external intensified streak tube receiver is presented, based on the linear cascaded systems theory of signal and noise propagation. The STIL system is decomposed into a series of cascaded imaging chains whose signal and noise transfer properties are described by the general (or the spatial-frequency dependent) noise factors (NFs). Expressions for the general NFs of the cascaded chains (or the main components) in the STIL system are derived. The work presented here is useful for the design and evaluation of STIL systems.

  11. A streaked X-ray spectroscopy platform for rapidly heated, near-solid density plasmas

    NASA Astrophysics Data System (ADS)

    Stillman, C. R.; Nilson, P. M.; Ivancic, S. T.; Mileham, C.; Begishev, I. A.; Junquist, R. K.; Nelson, D. J.; Froula, D. H.

    2016-11-01

    A picosecond, time-resolved, x-ray spectroscopy platform was developed to study the thermal line emission from rapidly heated solid targets containing buried aluminum or iron layers. The targets were driven by high-contrast 1ω or 2ω laser pulses at focused intensities up to 1 × 1019 W/cm2. The experimental platform combines time-integrating and time-resolved x-ray spectrometers. Picosecond time resolution was achieved with a pair of ultrafast x-ray streak cameras coupled to high-throughput Hall spectrometers. Time-integrated spectra were collected on each shot to correct the streaked data for variations in x-ray photocathode spectral sensitivity. The time-integrated spectrometer uses three elliptical crystals to disperse x rays with energies between 800 and 2100 eV with moderate (E/ΔE ˜ 450) resolving power. The streaked spectrometers accept four interchangeable conical crystals with higher resolving power (E/ΔE ˜ 650) to measure the brightest thermal lines in the 1300 to 1700 eV spectral range.

  12. Signal-to-noise performance analysis of streak tube imaging lidar systems. I. Cascaded model.

    PubMed

    Yang, Hongru; Wu, Lei; Wang, Xiaopeng; Chen, Chao; Yu, Bing; Yang, Bin; Yuan, Liang; Wu, Lipeng; Xue, Zhanli; Li, Gaoping; Wu, Baoning

    2012-12-20

    Streak tube imaging lidar (STIL) is an active imaging system using a pulsed laser transmitter and a streak tube receiver to produce 3D range and intensity imagery. The STIL has recently attracted a great deal of interest and attention due to its advantages of wide azimuth field-of-view, high range and angle resolution, and high frame rate. This work investigates the signal-to-noise performance of STIL systems. A theoretical model for characterizing the signal-to-noise performance of the STIL system with an internal or external intensified streak tube receiver is presented, based on the linear cascaded systems theory of signal and noise propagation. The STIL system is decomposed into a series of cascaded imaging chains whose signal and noise transfer properties are described by the general (or the spatial-frequency dependent) noise factors (NFs). Expressions for the general NFs of the cascaded chains (or the main components) in the STIL system are derived. The work presented here is useful for the design and evaluation of STIL systems. PMID:23262622

  13. A new streaked soft x-ray imager for the National Ignition Facility.

    PubMed

    Benstead, J; Moore, A S; Ahmed, M F; Morton, J; Guymer, T M; Soufli, R; Pardini, T; Hibbard, R L; Bailey, C G; Bell, P M; Hau-Riege, S; Bedzyk, M; Shoup, M J; Reagan, S; Agliata, T; Jungquist, R; Schmidt, D W; Kot, L B; Garbett, W J; Rubery, M S; Skidmore, J W; Gullikson, E; Salmassi, F

    2016-05-01

    A new streaked soft x-ray imager has been designed for use on high energy-density (HED) physics experiments at the National Ignition Facility based at the Lawrence Livermore National Laboratory. This streaked imager uses a slit aperture, single shallow angle reflection from a nickel mirror, and soft x-ray filtering to, when coupled to one of the NIF's x-ray streak cameras, record a 4× magnification, one-dimensional image of an x-ray source with a spatial resolution of less than 90 μm. The energy band pass produced depends upon the filter material used; for the first qualification shots, vanadium and silver-on-titanium filters were used to gate on photon energy ranges of approximately 300-510 eV and 200-400 eV, respectively. A two-channel version of the snout is available for x-ray sources up to 1 mm and a single-channel is available for larger sources up to 3 mm. Both the one and two-channel variants have been qualified on quartz wire and HED physics target shots.

  14. Development of a Data Reduction Algorithm for Optical Wide Field Patrol (OWL) II: Improving Measurement of Lengths of Detected Streaks

    NASA Astrophysics Data System (ADS)

    Park, Sun-Youp; Choi, Jin; Roh, Dong-Goo; Park, Maru; Jo, Jung Hyun; Yim, Hong-Suh; Park, Young-Sik; Bae, Young-Ho; Park, Jang-Hyun; Moon, Hong-Kyu; Choi, Young-Jun; Cho, Sungki; Choi, Eun-Jung

    2016-09-01

    As described in the previous paper (Park et al. 2013), the detector subsystem of optical wide-field patrol (OWL) provides many observational data points of a single artificial satellite or space debris in the form of small streaks, using a chopper system and a time tagger. The position and the corresponding time data are matched assuming that the length of a streak on the CCD frame is proportional to the time duration of the exposure during which the chopper blades do not obscure the CCD window. In the previous study, however, the length was measured using the diagonal of the rectangle of the image area containing the streak; the results were quite ambiguous and inaccurate, allowing possible matching error of positions and time data. Furthermore, because only one (position, time) data point is created from one streak, the efficiency of the observation decreases. To define the length of a streak correctly, it is important to locate the endpoints of a streak. In this paper, a method using a differential convolution mask pattern is tested. This method can be used to obtain the positions where the pixel values are changed sharply. These endpoints can be regarded as directly detected positional data, and the number of data points is doubled by this result.

  15. Low Albedo Surfaces and Eolian Sediment: Mars Orbiter Camera Views of Western Arabia Terra Craters and Wind Streaks

    NASA Technical Reports Server (NTRS)

    Edgett, Kenneth S.

    2001-01-01

    High spatial resolution (1.5 to 12 m/pixel) Mars Global Surveyor Mars Orbiter Camera images obtained September 1997 through June 2001 indicate that the large, dark wind streaks of western Arabia Terra each originate at a barchan dune field on a crater floor. The streaks consist of a relatively thin coating of sediment deflated from the dune fields and their vicinity. This sediment drapes a previous mantle that more thickly covers nearly all of western Arabia Terra. No dunes or eolian bedforms are found within the dark wind streaks, nor do any of the intracrater dunes climb up crater walls to provide sand to the wind streaks. The relations between dunes, wind streak, and subjacent terrain imply that dark-toned grains finer than those which comprise the dunes are lifted into suspension and carried out of the craters to be deposited on the adjacent terrain. Such grains are most likely in the silt size range (3.9-62.5 micrometers). The streaks change in terms of extent, relative albedo, and surface pattern over periods measured in years, but very little evidence for recent eolian activity (dust plumes, storms, dune movement) has been observed.

  16. Zmspds2 maize gene

    PubMed Central

    Rodríguez-Kessler, Margarita

    2008-01-01

    During the last decade, growing evidence has arisen referring the importance of the proper regulation of plant polyamine metabolism in the response to stress conditions. Being the activation of signaling pathways, the stabilization of anionic molecules and prevention of their degradation, as well as the free radical scavenger properties of polyamines some possible mechanisms exerted by these amines. Accumulation of polyamines (putrescine, spermidine and spermine) has been associated to plant tolerance to a wide array of environmental stresses. The synthesis of spermidine and spermine is mediated by aminopropyltransferases (spermidine and spermine synthases) which constitute a class of widely distributed enzymes that use decarboxylated S-adenosylmethionine as an aminopropyl donor, and putrescine or spermidine as an amino acceptor. We recently reported the effect of salt stress on the expression of aminopropyltransferase genes in maize seedlings. Our data revealed a time and NaCl dependent regulation of the Zmspds2 and Zmspds1 genes, possibly mediated by abscisic acid, since these genes were regulated at the transcriptional level by this plant hormone. In this addendum, we show that the Zmspds2 gene initially classified as spermidine synthase might encode a spermine synthase based on an in silico analysis. This is discussed in terms of protein homologies and specific amino acid substitutions between aminopropyltransferase enzymes. PMID:19704464

  17. MaizeGDB update: new tools, data and interface for the maize model organism database.

    PubMed

    Andorf, Carson M; Cannon, Ethalinda K; Portwood, John L; Gardiner, Jack M; Harper, Lisa C; Schaeffer, Mary L; Braun, Bremen L; Campbell, Darwin A; Vinnakota, Abhinav G; Sribalusu, Venktanaga V; Huerta, Miranda; Cho, Kyoung Tak; Wimalanathan, Kokulapalan; Richter, Jacqueline D; Mauch, Emily D; Rao, Bhavani S; Birkett, Scott M; Sen, Taner Z; Lawrence-Dill, Carolyn J

    2016-01-01

    MaizeGDB is a highly curated, community-oriented database and informatics service to researchers focused on the crop plant and model organism Zea mays ssp. mays. Although some form of the maize community database has existed over the last 25 years, there have only been two major releases. In 1991, the original maize genetics database MaizeDB was created. In 2003, the combined contents of MaizeDB and the sequence data from ZmDB were made accessible as a single resource named MaizeGDB. Over the next decade, MaizeGDB became more sequence driven while still maintaining traditional maize genetics datasets. This enabled the project to meet the continued growing and evolving needs of the maize research community, yet the interface and underlying infrastructure remained unchanged. In 2015, the MaizeGDB team completed a multi-year effort to update the MaizeGDB resource by reorganizing existing data, upgrading hardware and infrastructure, creating new tools, incorporating new data types (including diversity data, expression data, gene models, and metabolic pathways), and developing and deploying a modern interface. In addition to coordinating a data resource, the MaizeGDB team coordinates activities and provides technical support to the maize research community. MaizeGDB is accessible online at http://www.maizegdb.org.

  18. MaizeGDB update: new tools, data and interface for the maize model organism database.

    PubMed

    Andorf, Carson M; Cannon, Ethalinda K; Portwood, John L; Gardiner, Jack M; Harper, Lisa C; Schaeffer, Mary L; Braun, Bremen L; Campbell, Darwin A; Vinnakota, Abhinav G; Sribalusu, Venktanaga V; Huerta, Miranda; Cho, Kyoung Tak; Wimalanathan, Kokulapalan; Richter, Jacqueline D; Mauch, Emily D; Rao, Bhavani S; Birkett, Scott M; Sen, Taner Z; Lawrence-Dill, Carolyn J

    2016-01-01

    MaizeGDB is a highly curated, community-oriented database and informatics service to researchers focused on the crop plant and model organism Zea mays ssp. mays. Although some form of the maize community database has existed over the last 25 years, there have only been two major releases. In 1991, the original maize genetics database MaizeDB was created. In 2003, the combined contents of MaizeDB and the sequence data from ZmDB were made accessible as a single resource named MaizeGDB. Over the next decade, MaizeGDB became more sequence driven while still maintaining traditional maize genetics datasets. This enabled the project to meet the continued growing and evolving needs of the maize research community, yet the interface and underlying infrastructure remained unchanged. In 2015, the MaizeGDB team completed a multi-year effort to update the MaizeGDB resource by reorganizing existing data, upgrading hardware and infrastructure, creating new tools, incorporating new data types (including diversity data, expression data, gene models, and metabolic pathways), and developing and deploying a modern interface. In addition to coordinating a data resource, the MaizeGDB team coordinates activities and provides technical support to the maize research community. MaizeGDB is accessible online at http://www.maizegdb.org. PMID:26432828

  19. MaizeGDB update: new tools, data and interface for the maize model organism database

    PubMed Central

    Andorf, Carson M.; Cannon, Ethalinda K.; Portwood, John L.; Gardiner, Jack M.; Harper, Lisa C.; Schaeffer, Mary L.; Braun, Bremen L.; Campbell, Darwin A.; Vinnakota, Abhinav G.; Sribalusu, Venktanaga V.; Huerta, Miranda; Cho, Kyoung Tak; Wimalanathan, Kokulapalan; Richter, Jacqueline D.; Mauch, Emily D.; Rao, Bhavani S.; Birkett, Scott M.; Sen, Taner Z.; Lawrence-Dill, Carolyn J.

    2016-01-01

    MaizeGDB is a highly curated, community-oriented database and informatics service to researchers focused on the crop plant and model organism Zea mays ssp. mays. Although some form of the maize community database has existed over the last 25 years, there have only been two major releases. In 1991, the original maize genetics database MaizeDB was created. In 2003, the combined contents of MaizeDB and the sequence data from ZmDB were made accessible as a single resource named MaizeGDB. Over the next decade, MaizeGDB became more sequence driven while still maintaining traditional maize genetics datasets. This enabled the project to meet the continued growing and evolving needs of the maize research community, yet the interface and underlying infrastructure remained unchanged. In 2015, the MaizeGDB team completed a multi-year effort to update the MaizeGDB resource by reorganizing existing data, upgrading hardware and infrastructure, creating new tools, incorporating new data types (including diversity data, expression data, gene models, and metabolic pathways), and developing and deploying a modern interface. In addition to coordinating a data resource, the MaizeGDB team coordinates activities and provides technical support to the maize research community. MaizeGDB is accessible online at http://www.maizegdb.org. PMID:26432828

  20. Global maize production, utilization, and consumption.

    PubMed

    Ranum, Peter; Peña-Rosas, Juan Pablo; Garcia-Casal, Maria Nieves

    2014-04-01

    Maize (Zea mays), also called corn, is believed to have originated in central Mexico 7000 years ago from a wild grass, and Native Americans transformed maize into a better source of food. Maize contains approximately 72% starch, 10% protein, and 4% fat, supplying an energy density of 365 Kcal/100 g and is grown throughout the world, with the United States, China, and Brazil being the top three maize-producing countries in the world, producing approximately 563 of the 717 million metric tons/year. Maize can be processed into a variety of food and industrial products, including starch, sweeteners, oil, beverages, glue, industrial alcohol, and fuel ethanol. In the last 10 years, the use of maize for fuel production significantly increased, accounting for approximately 40% of the maize production in the United States. As the ethanol industry absorbs a larger share of the maize crop, higher prices for maize will intensify demand competition and could affect maize prices for animal and human consumption. Low production costs, along with the high consumption of maize flour and cornmeal, especially where micronutrient deficiencies are common public health problems, make this food staple an ideal food vehicle for fortification. PMID:24650320

  1. Global maize production, utilization, and consumption.

    PubMed

    Ranum, Peter; Peña-Rosas, Juan Pablo; Garcia-Casal, Maria Nieves

    2014-04-01

    Maize (Zea mays), also called corn, is believed to have originated in central Mexico 7000 years ago from a wild grass, and Native Americans transformed maize into a better source of food. Maize contains approximately 72% starch, 10% protein, and 4% fat, supplying an energy density of 365 Kcal/100 g and is grown throughout the world, with the United States, China, and Brazil being the top three maize-producing countries in the world, producing approximately 563 of the 717 million metric tons/year. Maize can be processed into a variety of food and industrial products, including starch, sweeteners, oil, beverages, glue, industrial alcohol, and fuel ethanol. In the last 10 years, the use of maize for fuel production significantly increased, accounting for approximately 40% of the maize production in the United States. As the ethanol industry absorbs a larger share of the maize crop, higher prices for maize will intensify demand competition and could affect maize prices for animal and human consumption. Low production costs, along with the high consumption of maize flour and cornmeal, especially where micronutrient deficiencies are common public health problems, make this food staple an ideal food vehicle for fortification.

  2. Simultaneous virus-specific detection of the two cassava brown streak-associated viruses by RT-PCR reveals wide distribution in East Africa, mixed infections, and infections in Manihot glaziovii.

    PubMed

    Mbanzibwa, D R; Tian, Y P; Tugume, A K; Mukasa, S B; Tairo, F; Kyamanywa, S; Kullaya, A; Valkonen, J P T

    2011-02-01

    The expanding cassava brown streak disease (CBSD) epidemic in East Africa is caused by two ipomoviruses (genus Ipomovirus; Potyviridae), namely, Cassava brown streak virus (CBSV), and Ugandan cassava brown streak virus (UCBSV) that was described recently. A reverse transcription polymerase chain reaction (RT-PCR) based diagnostic method was developed in this study for simultaneous virus-specific detection of the two viruses. Results showed that CBSV and UCBSV are distributed widely in the highlands (> 1000 m above the sea level) of the Lake Victoria zone in Uganda and Tanzania and also in the Indian Ocean costal lowlands of Tanzania. Isolates of UCBSV from the Lake Victoria zone were placed to two phylogenetic clusters in accordance with their origin in Uganda or Tanzania, respectively. Mixed infections with CBSV and UCBSV were detected in many cassava plants in the areas surveyed. CBSV was also detected in the perennial species Manihot glaziovii (DNA-barcoded in this study) in Tanzania, which revealed the first virus reservoir other than cassava. The method for detection of CBSV and UCBSV described in this study has important applications for plant quarantine, resistance breeding of cassava, and studies on epidemiology and control of CBSD in East Africa.

  3. Quantification of southern rice black streaked dwarf virus and rice black streaked dwarf virus in the organs of their vector and nonvector insect over time.

    PubMed

    Hajano, Jamal-U-Ddin; Wang, Biao; Ren, Yingdang; Lu, Chuantao; Wang, Xifeng

    2015-10-01

    Southern rice black streaked dwarf virus (SRBSDV) and rice black streaked dwarf virus (RBSDV) are serious rice-infecting reoviruses, which are transmitted by different planthoppers in a persistent propagative manner. In this study, we quantitatively compared the spatial distribution of SRBSDV and RBSDV contents over time in their vector and nonvector insects using real time-PCR. Genome equivalent copies (GEC) were assessed every 2 days from 0 to 14 days after a 3-days acquisition access period (AAP) on infected plants. Results revealed 293.2±21.6 to 404.1±46.4 SRBSDV GEC/ng total RNA in whole body of white-backed planthopper (WBPH, Sogatella furcifera) at day 0 and 12 and 513.5±88.4 to 816.8±110.7 RBSDV GEC/ng total RNA in the whole body of small brown planthopper (SBPH, Laodelphax striatellus) at day 0 and 14, respectively, after 3-days AAP. Highest GEC of both viruses were found in the gut of their respective vectors. Although SRBSDV was detected in the gut of SBPH, it did not spread into the hemolymph or other organs. After an 8-day latent period, the transmission efficiency of SRBSDV and RBSDV by their respective vectors was significantly positively correlated with GEC in the salivary gland (r(2)=0.7808, P=0.0036 and r(2)=0.9351, P<0.0001, respectively, at α=0.05). Together, these results confirm that accumulation of >200 SRBSDV or RBSDV GEC/ng total RNA in the gut of vector, indicated threshold for further spread and the virus content in the salivary gland was significantly correlated with transmission efficiency by their respective vectors.

  4. Quantification of southern rice black streaked dwarf virus and rice black streaked dwarf virus in the organs of their vector and nonvector insect over time.

    PubMed

    Hajano, Jamal-U-Ddin; Wang, Biao; Ren, Yingdang; Lu, Chuantao; Wang, Xifeng

    2015-10-01

    Southern rice black streaked dwarf virus (SRBSDV) and rice black streaked dwarf virus (RBSDV) are serious rice-infecting reoviruses, which are transmitted by different planthoppers in a persistent propagative manner. In this study, we quantitatively compared the spatial distribution of SRBSDV and RBSDV contents over time in their vector and nonvector insects using real time-PCR. Genome equivalent copies (GEC) were assessed every 2 days from 0 to 14 days after a 3-days acquisition access period (AAP) on infected plants. Results revealed 293.2±21.6 to 404.1±46.4 SRBSDV GEC/ng total RNA in whole body of white-backed planthopper (WBPH, Sogatella furcifera) at day 0 and 12 and 513.5±88.4 to 816.8±110.7 RBSDV GEC/ng total RNA in the whole body of small brown planthopper (SBPH, Laodelphax striatellus) at day 0 and 14, respectively, after 3-days AAP. Highest GEC of both viruses were found in the gut of their respective vectors. Although SRBSDV was detected in the gut of SBPH, it did not spread into the hemolymph or other organs. After an 8-day latent period, the transmission efficiency of SRBSDV and RBSDV by their respective vectors was significantly positively correlated with GEC in the salivary gland (r(2)=0.7808, P=0.0036 and r(2)=0.9351, P<0.0001, respectively, at α=0.05). Together, these results confirm that accumulation of >200 SRBSDV or RBSDV GEC/ng total RNA in the gut of vector, indicated threshold for further spread and the virus content in the salivary gland was significantly correlated with transmission efficiency by their respective vectors. PMID:26116274

  5. Betaine Deficiency in Maize 1

    PubMed Central

    Lerma, Claudia; Rich, Patrick J.; Ju, Grace C.; Yang, Wen-Ju; Hanson, Andrew D.; Rhodes, David

    1991-01-01

    Maize (Zea mays L.) is a betaine-accumulating species, but certain maize genotypes lack betaine almost completely; a single recessive gene has been implicated as the cause of this deficiency (D Rhodes, PJ Rich [1988] Plant Physiol 88: 102-108). This study was undertaken to determine whether betaine deficiency in diverse maize germplasm is conditioned by the same genetic locus, and to define the biochemical lesion(s) involved. Complementation tests indicated that all 13 deficient genotypes tested shared a common locus. One maize population (P77) was found to be segregating for betaine deficiency, and true breeding individuals were used to produce related lines with and without betaine. Leaf tissue of both betaine-positive and betaine-deficient lines readily converted supplied betaine aldehyde to betaine, but only the betaine-containing line was able to oxidize supplied choline to betaine. This locates the lesion in betaine-deficient plants at the choline → betaine aldehyde step of betaine synthesis. Consistent with this location, betaine-deficient plants were shown to have no detectable endogenous pool of betaine aldehyde. PMID:16668098

  6. Aggressiveness of Cephalosporium maydis causing late wilt of maize in Spain.

    PubMed

    García-Carneros, A B; Girón, I; Molinero-Ruiz, L

    2012-01-01

    Late wilt of maize, caused by the vascular and soilborne pathogen Cephalosporium maydis, was identified in the Iberian Peninsula in 2008. During the last years the incidence and economical impact of the disease has importantly increased both in Portugal and Spain. Varieties of maize displaying tolerance to the pathogen are available, but the effectiveness can be dependent on the virulence of the fungus (i.e. ability to cause disease on a specific genotype). On the other hand, strains of crop pathogens from different geographic origins can differ with regard to the degree of disease caused on a specific genotype (i.e. aggressiveness). Our working hypothesis was that isolates of C. maydis from different maize growing areas may differ in aggressiveness towards maize plants. Seven fungal strains were isolated in 2009 from diseased plants collected in the most important maize growing regions of Spain and used to inoculate two susceptible maize varieties grown in shadehouse from March to July 2010. The experimental unit consisted of two 4-day-old seedlings planted in an 8-liter pot filled with sand/silt previously infested with 200 g of wheat grains colonized by the fungi. Non colonized wheat grains were used for the control treatments. Six replications (pots) were established for each variety/isolate combination according to a complete randomized 2 x 8 factorial design. The percentage of necrotic and dry aboveground tissues was recorded 14 weeks after inoculation and thereafter weekly until physiological senescence of the control plants. At the end of the experiment, weights of roots and aboveground parts of the plants were recorded. Initial occurrence of symptoms in the plants was significantly dependent on the isolate of C. maydis and on the maize variety. However, final severity of aboveground symptoms (leaf necroses and drying up) was only dependent on the fungal isolate. All the isolates significantly reduced the root weight of both varieties of maize. The highest

  7. Use of Mutant-Assisted Gene Identification and Characterization (MAGIC) to identify novel genetic loci that modify the maize hypersensitive response

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The partially-dominant, autoactive maize disease resistance gene Rp1-D21 causes hypersensitive response (HR) lesions to form spontaneously on the leaves and stem in the absence of pathogen recognition. The maize nested association mapping (NAM) population consists of 25 200-line subpopulations each...

  8. Enantioselective Phytotoxicity of Imazamox Against Maize Seedlings.

    PubMed

    Wei, Jing; Zhang, Xiaoxiao; Li, Xuesheng; Zeng, Dongqiang; Tan, Huihua

    2016-02-01

    There is increasing concern about the enantioselective effects of chiral herbicides. To study the enantioselective toxicity of the chiral herbicide imazamox on maize, maize seedlings (Zhengda 619, Zea mays L.) were exposed to imazamox racemate and enantiomers in hydroponic experiments. The results showed that imazamox enantiomers selectively affected maize. The effective concentration of Rac-, S- and R-imazamox that caused 50 % inhibition after 5 days treatments (EC50,5d) were 0.4212, 1.2142 and 0.2460 mg L(-1), respectively, for maize root length; 0.0002, 0.1005, 0.0032 mg L(-1), respectively, for maize root fresh weight; 0.7114, 1.4056 and 0.4530 mg L(-1), respectively, for maize shoot height; 0.6220, 1.5418, 0.2286 mg L(-1), respectively, for maize shoot fresh weight; and 0.1100, 0.3306, 0.0307 mg L(-1), respectively, for the total chlorophyll content of leaves. The root morphological parameters and root activity reflected the toxicity effects in the order R-imazamox > Rac-imazamox > S-imazamox. Maize roots were more sensitive to imazamox than maize shoots. The chiral herbicide imazamox poses enantioselective phytotoxicity on maize seedlings: the order of toxicity is R-imazamox > Rac-imazamox > S-imazamox. PMID:26508428

  9. Volatiles Emitted from Maize Ears Simultaneously Infected with Two Fusarium Species Mirror the Most Competitive Fungal Pathogen

    PubMed Central

    Sherif, Mohammed; Becker, Eva-Maria; Herrfurth, Cornelia; Feussner, Ivo; Karlovsky, Petr; Splivallo, Richard

    2016-01-01

    Along with barley and rice, maize provides staple food for more than half of the world population. Maize ears are regularly infected with fungal pathogens of the Fusarium genus, which, besides reducing yield, also taint grains with toxic metabolites. In an earlier work, we have shown that maize ears infection with single Fusarium strains was detectable through volatile sensing. In nature, infection most commonly occurs with more than a single fungal strain; hence we tested how the interactions of two strains would modulate volatile emission from infected ears. For this purpose, ears of a hybrid and a dwarf maize variety were simultaneously infected with different strains of Fusarium graminearum and F. verticillioides and, the resulting volatile profiles were compared to the ones of ears infected with single strains. Disease severity, fungal biomass, and the concentration of the oxylipin 9-hydroxy octadecadienoic acid, a signaling molecule involved in plant defense, were monitored and correlated to volatile profiles. Our results demonstrate that in simultaneous infections of hybrid and dwarf maize, the most competitive fungal strains had the largest influence on the volatile profile of infected ears. In both concurrent and single inoculations, volatile profiles reflected disease severity. Additionally, the data further indicate that dwarf maize and hybrid maize might emit common (i.e., sesquiterpenoids) and specific markers upon fungal infection. Overall this suggests that volatile profiles might be a good proxy for disease severity regardless of the fungal competition taking place in maize ears. With the appropriate sensitivity and reliability, volatile sensing thus appears as a promising tool for detecting fungal infection of maize ears under field conditions. PMID:27729923

  10. A Dust Devil Making a Streak and Climbing a Crater Wall

    NASA Technical Reports Server (NTRS)

    2002-01-01

    MGS MOC Release No. MOC2-318, 8 August 2002 [figure removed for brevity, see original site] One of the key elements of the Mars Global Surveyor (MGS) Mars Orbiter Camera (MOC) Extended Mission is to look for and monitor changes taking place on the planet over the course of a second--and, eventually, a third--martian year. MGS is now well into its second Mars year, which will draw to a close in December 2002. Among the changes the MOC has observed are streaks believed to be caused by the passage of dust devils. Thousands of MOC images show these streaks, dozens show that they change over time, but far fewer images have actually captured a dust devil in the act of creating a streak. At the center right of this image (above left) is a dust devil that, on May 21, 2002, was seen climbing the wall of a crater at 4.1oS, 9.5oW. This crater (above right) is in western Terra Meridiani. The dust devil was moving toward the northeast (upper right), leaving behind a dark trail where a thin coating of surficial dust was removed or disrupted as the dust devil advanced. Dust devils most commonly form after noon on days when the martian air is still (that is, when there isn't even a faint breeze). On such days, the ground is better able to heat up the air immediately above the surface. As the warmed near-surface air begins to rise, it also begins to spin, creating a vortex. The spinning column then moves across the surface and picks up loose dust (if any is present). The dust makes the vortex visible and gives it a tornado-like appearance. The dust devil in this image has a very short, dark shadow cast to the right of the bright column; this shadow is short because the sun was nearly overhead.

  11. Absolute calibration method for nanosecond-resolved, time-streaked, fiber optic light collection, spectroscopy systems

    NASA Astrophysics Data System (ADS)

    Johnston, Mark D.; Oliver, Bryan V.; Droemer, Darryl W.; Frogget, Brent; Crain, Marlon D.; Maron, Yitzhak

    2012-08-01

    This paper describes a convenient and accurate method to calibrate fast (<1 ns resolution) streaked, fiber optic light collection, spectroscopy systems. Such systems are inherently difficult to calibrate due to the lack of sufficiently intense, calibrated light sources. Such a system is used to collect spectral data on plasmas generated in electron beam diodes fielded on the RITS-6 accelerator (8-12MV, 140-200kA) at Sandia National Laboratories. On RITS, plasma light is collected through a small diameter (200 μm) optical fiber and recorded on a fast streak camera at the output of a 1 meter Czerny-Turner monochromator. For this paper, a 300 W xenon short arc lamp (Oriel Model 6258) was used as the calibration source. Since the radiance of the xenon arc varies from cathode to anode, just the area around the tip of the cathode ("hotspot") was imaged onto the fiber, to produce the highest intensity output. To compensate for chromatic aberrations, the signal was optimized at each wavelength measured. Output power was measured using 10 nm bandpass interference filters and a calibrated photodetector. These measurements give power at discrete wavelengths across the spectrum, and when linearly interpolated, provide a calibration curve for the lamp. The shape of the spectrum is determined by the collective response of the optics, monochromator, and streak tube across the spectral region of interest. The ratio of the spectral curve to the measured bandpass filter curve at each wavelength produces a correction factor (Q) curve. This curve is then applied to the experimental data and the resultant spectra are given in absolute intensity units (photons/sec/cm2/steradian/nm). Error analysis shows this method to be accurate to within +/- 20%, which represents a high level of accuracy for this type of measurement.

  12. Electronic Image Readout Devices Used In Conjunction With Picosecond Streak Cameras

    NASA Astrophysics Data System (ADS)

    Cavailler, C.; Genoud, M.; Fleurot, N.; Launspach, J.; Mazataud, D.; Mens, A.

    1985-02-01

    Understanding the laser-matter interaction experiments require a dynamic recording of the phenomena as well as a good knowledge of the laser pulse occuring during the irradiation of the target ; those measurements are made with streak cameras the increasing number of which leads to processing problems when the results are recorded on films. Furthermore, since physicists wish to have those temporal information immediatly, we unfolded automatic image readout devices fitted specially to streak cameras. The first one used an ISOCON tube operating with a slow sweep (0.5 s frame)1-2. The sensitivity of the tube was very good but its dynamic range was too limited when seeing pulsed images at low light level. So we developped two electronic readout chains with solid state devices which behave better for that kind of light. The first one was designed to get the most information along the temporal axis of the camera sweep (1024 points) in one or two spatial channels ; this device operates a linear 1024 photodiodes array the signal of which is digitized on 12 bits. We have obtained a temporal resolution better than 15 ps and a dynamic range over 500 ; this system is mainly useful to study laser pulses (rise time, temporal profile...)3. For applications requiring two dimension images, we studied and realized a device operating a CCD array and a fiber optics reducer (40-18 mm) adapting the image of the streak camera screen to the dimensions of the input fiber optics of the CCD. A comparison has been made on different CCD cameras on a test setup which simulates the experimental conditions, in order to choose the CCD which would fit the best for that purpose ; we present these results here, as well as those of the associated readout chains.

  13. Absolute calibration method for nanosecond-resolved, time-streaked, fiber optic light collection, spectroscopy systems.

    PubMed

    Johnston, Mark D; Oliver, Bryan V; Droemer, Darryl W; Frogget, Brent; Crain, Marlon D; Maron, Yitzhak

    2012-08-01

    This paper describes a convenient and accurate method to calibrate fast (<1 ns resolution) streaked, fiber optic light collection, spectroscopy systems. Such systems are inherently difficult to calibrate due to the lack of sufficiently intense, calibrated light sources. Such a system is used to collect spectral data on plasmas generated in electron beam diodes fielded on the RITS-6 accelerator (8-12MV, 140-200kA) at Sandia National Laboratories. On RITS, plasma light is collected through a small diameter (200 μm) optical fiber and recorded on a fast streak camera at the output of a 1 meter Czerny-Turner monochromator. For this paper, a 300 W xenon short arc lamp (Oriel Model 6258) was used as the calibration source. Since the radiance of the xenon arc varies from cathode to anode, just the area around the tip of the cathode ("hotspot") was imaged onto the fiber, to produce the highest intensity output. To compensate for chromatic aberrations, the signal was optimized at each wavelength measured. Output power was measured using 10 nm bandpass interference filters and a calibrated photodetector. These measurements give power at discrete wavelengths across the spectrum, and when linearly interpolated, provide a calibration curve for the lamp. The shape of the spectrum is determined by the collective response of the optics, monochromator, and streak tube across the spectral region of interest. The ratio of the spectral curve to the measured bandpass filter curve at each wavelength produces a correction factor (Q) curve. This curve is then applied to the experimental data and the resultant spectra are given in absolute intensity units (photons/sec/cm(2)/steradian/nm). Error analysis shows this method to be accurate to within +∕- 20%, which represents a high level of accuracy for this type of measurement. PMID:22938275

  14. Loop-mediated Isothermal Amplification Assay to Rapidly Detect Wheat Streak Mosaic Virus in Quarantined Plants

    PubMed Central

    Lee, Siwon; Kim, Jin-Ho; Choi, Ji-Young; Jang, Won-Cheoul

    2015-01-01

    We developed a loop-mediated isothermal amplification (LAMP) method to rapidly diagnose Wheat streak mosaic virus (WSMV) during quarantine inspections of imported wheat, corn, oats, and millet. The LAMP method was developed as a plant quarantine inspection method for the first time, and its simplicity, quickness, specificity and sensitivity were verified compared to current reverse transcription-polymerase chain reaction (RT-PCR) and nested PCR quarantine methods. We were able to quickly screen for WSMV at quarantine sites with many test samples; thus, this method is expected to contribute to plant quarantine inspections. PMID:26674930

  15. Capsule Ablator Inflight Performance Measurements Via Streaked Radiography Of ICF Implosions On The NIF*

    NASA Astrophysics Data System (ADS)

    Dewald, E. L.; Tommasini, R.; Mackinnon, A.; MacPhee, A.; Meezan, N.; Olson, R.; Hicks, D.; LePape, S.; Izumi, N.; Fournier, K.; Barrios, M. A.; Ross, S.; Pak, A.; Döppner, T.; Kalantar, D.; Opachich, K.; Rygg, R.; Bradley, D.; Bell, P.; Hamza, A.; Dzenitis, B.; Landen, O. L.; MacGowan, B.; LaFortune, K.; Widmayer, C.; Van Wonterghem, B.; Kilkenny, J.; Edwards, M. J.; Atherton, J.; Moses, E. I.

    2016-03-01

    Streaked 1-dimensional (slit imaging) radiography of 1.1 mm radius capsules in ignition hohlraums was recently introduced on the National Ignition Facility (NIF) and gives an inflight continuous record of capsule ablator implosion velocities, shell thickness and remaining mass in the last 3-5 ns before peak implosion time. The high quality data delivers good accuracy in implosion metrics that meets our requirements for ignition and agrees with recently introduced 2-dimensional pinhole radiography. Calculations match measured trajectory across various capsule designs and laser drives when the peak laser power is reduced by 20%. Furthermore, calculations matching measured trajectories give also good agreement in ablator shell thickness and remaining mass.

  16. Temporal Characterization of Electron Beam Bunches with a Fast Streak Camera at the JLab FEL Facility

    SciTech Connect

    S. Zhang; S.V. Benson; D. Douglas; D. Hardy; C. Hernandez-Garcia; K. Jordan; G. Neil; Michelle D. Shinn

    2005-08-21

    The design and construction of an optical transport that brings synchrotron radiation from electron bunches to a fast streak camera in a remote area has become a useful tool for online observation of bunch length and stability. This paper will report on the temporal measurements we have done, comparison with simulations, and the on-going work for another imaging optical transport system that will make possible the direct measurement of the longitudinal phase space by measuring the bunch length as a function of energy

  17. Physics and roller coasters-The Blue Streak at Cedar Point

    NASA Astrophysics Data System (ADS)

    Speers, Robert R.

    1991-06-01

    The use of a roller coaster for external classroom studies of kinematics, forces, dynamics, and energy conservation is discussed. Experimental accelerometer measurements of the vertical forces acting on riders of the Blue Streak at Cedar Point in Sandusky, Ohio are presented. Theoretically, the track profile is used to calculate/predict the vertical forces acting on a rider at the hilltops, valley bottoms, and several other points of interest along the track. Finally the experimental results and theoretical predictions are compared in the context of a rider's experiences.

  18. Loop-mediated Isothermal Amplification Assay to Rapidly Detect Wheat Streak Mosaic Virus in Quarantined Plants.

    PubMed

    Lee, Siwon; Kim, Jin-Ho; Choi, Ji-Young; Jang, Won-Cheoul

    2015-12-01

    We developed a loop-mediated isothermal amplification (LAMP) method to rapidly diagnose Wheat streak mosaic virus (WSMV) during quarantine inspections of imported wheat, corn, oats, and millet. The LAMP method was developed as a plant quarantine inspection method for the first time, and its simplicity, quickness, specificity and sensitivity were verified compared to current reverse transcription-polymerase chain reaction (RT-PCR) and nested PCR quarantine methods. We were able to quickly screen for WSMV at quarantine sites with many test samples; thus, this method is expected to contribute to plant quarantine inspections. PMID:26674930

  19. Commissioning of the advanced light source dual-axis streak camera

    SciTech Connect

    Hinkson, J.; Keller, R.; Byrd, J.

    1997-05-01

    A dual-axis camera, Hamamatsu model C5680, has been installed on the Advanced Light Source photon-diagnostics beam-line to investigate electron-beam parameters. During its commissioning process, the camera has been used to measure single-bunch length vs. current, relative bunch charge in adjacent RF buckets, and bunchphase stability. In this paper the authors describe the visible-light branch of the diagnostics beam-line, the streak-camera installation, and the timing electronics. They will show graphical results of beam measurements taken during a variety of accelerator conditions.

  20. Modes on a short SPEAR bunch as observed with a streak camera

    SciTech Connect

    Sabersky, A.P.; Donald, M.H.R.

    1981-02-01

    The longitudinal structure of electron bunches in the storage ring SPEAR on a single pass was studied with time resolution approx. 10 ps. The measuring instrument used is an image-converter streak camera, a specialized device heretofore used mostly by laser workers. Unexpectedly, under some conditions the charge in a single RF bucket breaks up into two short sub-bunches which seem to rotate about a common center in energy-phase space. No evidence is seen for other, higher-frequency structure on the bunches.

  1. Fiber scintillator/streak camera detector for burn history measurement in inertial confinement fusion experiment

    SciTech Connect

    Miyanaga, N.; Ohba, N.; Fujimoto, K.

    1997-01-01

    To measure the burn history in an inertial confinement fusion experiment, we have developed a new neutron detector based on plastic scintillation fibers. Twenty-five fiber scintillators were arranged in a geometry compensation configuration by which the time-of-flight difference of the neutrons is compensated by the transit time difference of light passing through the fibers. Each fiber scintillator is spliced individually to an ultraviolet optical fiber that is coupled to a streak camera. We have demonstrated a significant improvement of sensitivity compared with the usual bulk scintillator coupled to a bundle of the same ultraviolet fibers. {copyright} {ital 1997 American Institute of Physics.}

  2. Transient electric fields in laser plasmas observed by proton streak deflectometry

    SciTech Connect

    Sokollik, T.; Schnuerer, M.; Ter-Avetisyan, S.; Nickles, P. V.; Risse, E.; Kalashnikov, M.; Sandner, W.; Priebe, G.; Amin, M.; Toncian, T.; Willi, O.; Andreev, A. A.

    2008-03-03

    A novel proton imaging technique was applied which allows a continuous temporal record of electric fields within a time window of several nanoseconds. This 'proton streak deflectometry' was used to investigate transient electric fields of intense ({approx}10{sup 17} W/cm{sup 2}) laser irradiated foils. We found out that these fields with an absolute peak of up to 10{sup 8} V/m extend over millimeter lateral extension and decay at nanosecond duration. Hence, they last much longer than the (approximately picosecond) laser excitation and extend much beyond the laser irradiation focus.

  3. Streaked Optical Pyrometer System for Laser-Driven Shock-Wave Experiments on OMEGA

    SciTech Connect

    Miller, J.E.; Boehly, T.R.; Melchior, Meyerhofer, D.D.; Celliers, P.M.; Eggert, J.H.; Hicks, D.G.; Sorce, C.M.; Oertel, J.A.; Emmel, P.M.

    2007-03-23

    The temperature of laser-driven shock waves is of interest to inertial confinement fusion and high-energy-density physics. We report on a streaked optical pyrometer that measures the self-emission of laser-driven shocks simultaneously with a velocity interferometer system for any reflector (VISAR). Together these diagnostics are used to obtain the temporally and spatially resolved temperatures of ~Mbar shocks driven by the OMEGA laser. We provide a brief description of the diagnostic and how it is used with VISAR. Key spectral calibration results are discussed and important characteristics of the recording system are presented.

  4. Streaked optical pyrometer system for laser-driven shock-wave experiments on OMEGA.

    PubMed

    Miller, J E; Boehly, T R; Melchior, A; Meyerhofer, D D; Celliers, P M; Eggert, J H; Hicks, D G; Sorce, C M; Oertel, J A; Emmel, P M

    2007-03-01

    The temperature of laser-driven shock waves is of interest to inertial confinement fusion and high-energy-density physics. We report on a streaked optical pyrometer that measures the self-emission of laser-driven shocks simultaneously with a velocity interferometer system for any reflector (VISAR). Together these diagnostics are used to obtain the temporally and spatially resolved temperatures of approximately megabar shocks driven by the OMEGA laser. We provide a brief description of the diagnostic and how it is used with VISAR. Key spectral calibration results are discussed and important characteristics of the recording system are presented. PMID:17411209

  5. Comparative Sequence Analysis of the Sorghum Rph Region and the Maize Rp1 Resistance Gene Complex

    PubMed Central

    Ramakrishna, Wusirika; Emberton, John; SanMiguel, Phillip; Ogden, Matthew; Llaca, Victor; Messing, Joachim; Bennetzen, Jeffrey L.

    2002-01-01

    A 268-kb chromosomal segment containing sorghum (Sorghum bicolor) genes that are orthologous to the maize (Zea mays) Rp1 disease resistance (R) gene complex was sequenced. A region of approximately 27 kb in sorghum was found to contain five Rp1 homologs, but most have structures indicating that they are not functional. In contrast, maize inbred B73 has 15 Rp1 homologs in two nearby clusters of 250 and 300 kb. As at maize Rp1, the cluster of R gene homologs is interrupted by the presence of several genes that appear to have no resistance role, but these genes were different from the ones found within the maize Rp1 complex. More than 200 kb of DNA downstream from the sorghum Rp1-orthologous R gene cluster was sequenced and found to contain many duplicated and/or truncated genes. None of the duplications currently exist as simple tandem events, suggesting that numerous rearrangements were required to generate the current genomic structure. Four truncated genes were observed, including one gene that appears to have both 5′ and 3′ deletions. The maize Rp1 region is also unusually enriched in truncated genes. Hence, the orthologous maize and sorghum regions share numerous structural features, but all involve events that occurred independently in each species. The data suggest that complex R gene clusters are unusually prone to frequent internal and adjacent chromosomal rearrangements of several types. PMID:12481055

  6. Maize ZmRACK1 Is Involved in the Plant Response to Fungal Phytopathogens

    PubMed Central

    Wang, Baosheng; Yu, Jingjuan; Zhu, Dengyun; Chang, Yujie; Zhao, Qian

    2014-01-01

    The receptor for activated C kinase 1 (RACK1) belongs to a protein subfamily containing a tryptophan-aspartic acid-domain (WD) repeat structure. Compelling evidence indicates that RACK1 can interact with many signal molecules and affect different signal transduction pathways. In this study, we cloned a maize RACK1 gene (ZmRACK1) by RT-PCR. The amino acid sequence of ZmRACK1 had seven WD repeats in which there were typical GH (glycine-histidine) and WD dipeptides. Comparison with OsRACK1 from rice revealed 89% identity at the amino acid level. Expression pattern analysis by RT-PCR showed that ZmRACK1 was expressed in all analyzed tissues of maize and that its transcription in leaves was induced by abscisic acid and jasmonate at a high concentration. Overexpression of ZmRACK1 in maize led to a reduction in symptoms caused by Exserohilum turcicum (Pass.) on maize leaves. The expression levels of the pathogenesis-related protein genes, PR-1 and PR-5, increased 2.5–3 times in transgenic maize, and reactive oxygen species production was more active than in the wild-type. Yeast two-hybrid assays showed that ZmRACK1 could interact with RAC1, RAR1 and SGT1. This study and previous work leads us to believe that ZmRACK1 may form a complex with regulators of plant disease resistance to coordinate maize reactions to pathogens. PMID:24865494

  7. MaizeGDB: Global support for maize research through open access information [abstract

    Technology Transfer Automated Retrieval System (TEKTRAN)

    MaizeGDB is the open-access global repository for maize genetic and genomic information – from single genes that determine nutritional quality to whole genome-scale data for complex traits including yield and drought tolerance. The data and tools at MaizeGDB enable researchers from Ethiopia to Ghan...

  8. Kernel Composition, Starch Structure, and Enzyme Digestibility of Opaque-2 Maize and Quality Protein Maize

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Objectives of this study were to understand how opaque-2 (o2) mutation and quality protein maize (QPM) affect maize kernel composition and starch structure, property, and enzyme digestibility. Kernels of o2 maize contained less protein (9.6−12.5%) than those of the wild-type (WT) counterparts (12...

  9. Divergence between sympatric rice- and maize-infecting populations of Rhizoctonia solani AG-1 IA from Latin America.

    PubMed

    González-Vera, A D; Bernardes-de-Assis, J; Zala, M; McDonald, B A; Correa-Victoria, F; Graterol-Matute, E J; Ceresini, P C

    2010-02-01

    ABSTRACT The basidiomycetous fungus Rhizoctonia solani anastomosis group (AG)-1 IA is a major pathogen in Latin America causing sheath blight (SB) of rice. Particularly in Venezuela, the fungus also causes banded leaf and sheath blight (BLSB) on maize, which is considered an emerging disease problem where maize replaced traditional rice-cropping areas or is now planted in adjacent fields. Our goals in this study were to elucidate (i) the effects of host specialization on gene flow between sympatric and allopatric rice and maize-infecting fungal populations and (ii) the reproductive mode of the fungus, looking for evidence of recombination. In total, 375 isolates of R. solani AG1 IA sampled from three sympatric rice and maize fields in Venezuela (Portuguesa State) and two allopatric rice fields from Colombia (Meta State) and Panama (Chiriquí State) were genotyped using 10 microsatellite loci. Allopatric populations from Venezuela, Colombia, and Panama were significantly differentiated (Phi(ST) of 0.16 to 0.34). Partitioning of the genetic diversity indicated differentiation between sympatric populations from different host species, with 17% of the total genetic variation distributed between hosts while only 3 to 6% was distributed geographically among the sympatric Venezuelan fields. We detected symmetrical historical migration between the rice- and the maize-infecting populations from Venezuela. Rice- and maize-derived isolates were able to infect both rice and maize but were more aggressive on their original hosts, consistent with host specialization. Because the maize- and rice-infecting populations are still cross-pathogenic, we postulate that the genetic differentiation was relatively recent and mediated via a host shift. An isolation with migration analysis indicated that the maize-infecting population diverged from the rice-infecting population between 40 and 240 years ago. Our findings also suggest that maize-infecting populations have a mainly recombining

  10. Wind Streaks

    NASA Technical Reports Server (NTRS)

    2004-01-01

    [figure removed for brevity, see original site]

    Released 12 July 2004 The atmosphere of Mars is a dynamic system. Water-ice clouds, fog, and hazes can make imaging the surface from space difficult. Dust storms can grow from local disturbances to global sizes, through which imaging is impossible. Seasonal temperature changes are the usual drivers in cloud and dust storm development and growth.

    Eons of atmospheric dust storm activity has left its mark on the surface of Mars. Dust carried aloft by the wind has settled out on every available surface; sand dunes have been created and moved by centuries of wind; and the effect of continual sand-blasting has modified many regions of Mars, creating yardangs and other unusual surface forms.

    Windstreaks are features caused by the interaction of wind and topographic landforms. The raised rims and bowls of impact craters causes a complex interaction such that the wind vortex in the lee of the crater can both scour away the surface dust and deposit it back in the center of the lee. If you look closely, you will see evidence of this in a darker 'rim' enclosing a brighter interior.

    Image information: VIS instrument. Latitude 6.9, Longitude 69.4 East (290.6 West). 19 meter/pixel resolution.

    Note: this THEMIS visual image has not been radiometrically nor geometrically calibrated for this preliminary release. An empirical correction has been performed to remove instrumental effects. A linear shift has been applied in the cross-track and down-track direction to approximate spacecraft and planetary motion. Fully calibrated and geometrically projected images will be released through the Planetary Data System in accordance with Project policies at a later time.

    NASA's Jet Propulsion Laboratory manages the 2001 Mars Odyssey mission for NASA's Office of Space Science, Washington, D.C. The Thermal Emission Imaging System (THEMIS) was developed by Arizona State University, Tempe, in collaboration with Raytheon Santa Barbara Remote Sensing. The THEMIS investigation is led by Dr. Philip Christensen at Arizona State University. Lockheed Martin Astronautics, Denver, is the prime contractor for the Odyssey project, and developed and built the orbiter. Mission operations are conducted jointly from Lockheed Martin and from JPL, a division of the California Institute of Technology in Pasadena.

  11. MaizeGDB becomes 'sequence-centric'.

    PubMed

    Sen, Taner Z; Andorf, Carson M; Schaeffer, Mary L; Harper, Lisa C; Sparks, Michael E; Duvick, Jon; Brendel, Volker P; Cannon, Ethalinda; Campbell, Darwin A; Lawrence, Carolyn J

    2009-01-01

    MaizeGDB is the maize research community's central repository for genetic and genomic information about the crop plant and research model Zea mays ssp. mays. The MaizeGDB team endeavors to meet research needs as they evolve based on researcher feedback and guidance. Recent work has focused on better integrating existing data with sequence information as it becomes available for the B73, Mo17 and Palomero Toluqueño genomes. Major endeavors along these lines include the implementation of a genome browser to graphically represent genome sequences; implementation of POPcorn, a portal ancillary to MaizeGDB that offers access to independent maize projects and will allow BLAST similarity searches of participating projects' data sets from a single point; and a joint MaizeGDB/PlantGDB project to involve the maize community in genome annotation. In addition to summarizing recent achievements and future plans, this article also discusses specific examples of community involvement in setting priorities and design aspects of MaizeGDB, which should be of interest to other database and resource providers seeking to better engage their users. MaizeGDB is accessible online at http://www.maizegdb.org.Database URL:http://www.maizegdb.org.

  12. Picosecond-resolved X-ray absorption spectroscopy at low signal contrast using a hard X-ray streak camera

    SciTech Connect

    Adams, Bernhard W.; Rose-Petruck, Christoph; Jiao, Yishuo

    2015-06-24

    A picosecond-resolving hard-X-ray streak camera has been in operation for several years at Sector 7 of the Advanced Photon Source (APS). Several upgrades have been implemented over the past few years to optimize integration into the beamline, reduce the timing jitter, and improve the signal-to-noise ratio. These include the development of X-ray optics for focusing the X-rays into the sample and the entrance slit of the streak camera, and measures to minimize the amount of laser light needed to generate the deflection-voltage ramp. For the latter, the photoconductive switch generating the deflection ramp was replaced with microwave power electronics. With these, the streak camera operates routinely at 88 MHz repetition rate, thus making it compatible with all of the APS fill patterns including use of all the X-rays in the 324-bunch mode. Sample data are shown to demonstrate the performance.

  13. Frequency-Domain Streak Camera and Tomography for Ultrafast Imaging of Evolving and Channeled Plasma Accelerator Structures

    NASA Astrophysics Data System (ADS)

    Li, Zhengyan; Zgadzaj, Rafal; Wang, Xiaoming; Reed, Stephen; Dong, Peng; Downer, Michael C.

    2010-11-01

    We demonstrate a prototype Frequency Domain Streak Camera (FDSC) that can capture the picosecond time evolution of the plasma accelerator structure in a single shot. In our prototype Frequency-Domain Streak Camera, a probe pulse propagates obliquely to a sub-picosecond pump pulse that creates an evolving nonlinear index "bubble" in fused silica glass, supplementing a conventional Frequency Domain Holographic (FDH) probe-reference pair that co-propagates with the "bubble". Frequency Domain Tomography (FDT) generalizes Frequency-Domain Streak Camera by probing the "bubble" from multiple angles and reconstructing its morphology and evolution using algorithms similar to those used in medical CAT scans. Multiplexing methods (Temporal Multiplexing and Angular Multiplexing) improve data storage and processing capability, demonstrating a compact Frequency Domain Tomography system with a single spectrometer.

  14. Fine structures of embryonic discs of in vivo post-hatching porcine blastocysts at the pre-primitive streak stage.

    PubMed

    Xia, P; Liu, Z; Qin, P

    2011-04-01

    To date, reports about the ultrastructure of porcine embryonic discs have not shown details of the primitive streak. The main objective of this study was to examine the ultrastructure of interior and exterior embryonic discs in porcine in vivo blastocysts with diameters of 1, 3 and 9 mm using scanning electron microscopy and transmission electron microscopy. For the first time, we revealed the ultrastructure of the unusual group of cells in the pre-primitive streak area of embryonic discs. The cells were 1-2 μm in diameter, had high electron density and contained abundant, free ribosomes and endoplasmic reticulum. These primitive streak cells could represent original embryonic stem cells or represent a stem cell niche. The results also showed three types of cells on the exterior surface of the embryonic discs. Moreover, our results provided morphological evidence of condensed nuclei in the smooth cells on the surface of the embryonic disc.

  15. An Optical Streak Diagnostic for Observing Anode-Cathode Plasmas for Radiographic Source Development

    SciTech Connect

    Droemer, Darryl W.; Crain, Marlon D.; Lare, Gregory A.; Bennett, Nichelle L.; Johnston, Mark D.

    2013-06-13

    National Security Technologies, LLC, and Sandia National Laboratories are collaborating in the development of pulsed power–driven flash x-ray radiographic sources that utilize high-intensity electron beam diodes. The RITS 6 (Radiographic Integrated Test Stand) accelerator at Sandia is used to drive a self magnetic pinch diode to produce a Bremsstrahlung x-ray source. The high electric fields and current densities associated with these short A-K gap pinch beam diodes present many challenges in diode development. Plasmas generated at both the anode and cathode affect the diode performance, which is manifested in varying spot (source) sizes, total dose output, and impedance profiles. Understanding the nature of these plasmas including closure rates and densities is important in modeling their behavior and providing insight into their mitigation. In this paper we describe a streak camera–based optical diagnostic that is capable of observing and measuring plasma evolution within the A-K gap. By imaging a region of interest onto the input slit of a streak camera, we are able to produce a time-resolved one-dimensional image of the evolving plasma. Typical data are presented.

  16. Attosecond photoelectron streaking with enhanced energy resolution for small-bandgap materials.

    PubMed

    Guggenmos, Alexander; Akil, Ayman; Ossiander, Marcus; Schäffer, Martin; Azzeer, Abdallah Mohammed; Boehm, Gerhard; Amann, Markus-Christian; Kienberger, Reinhard; Schultze, Martin; Kleineberg, Ulf

    2016-08-15

    Attosecond photoelectron streaking spectroscopy allows time-resolved electron dynamics with a temporal resolution approaching the atomic unit of time. Studies have been performed in numerous systems, including atoms, molecules, and surfaces, and the quest for ever higher temporal resolution called for ever wider spectral extent of the attosecond pulses. For typical experiments relying on attosecond pulses with a duration of 200 as, the time-bandwidth limitation for a Gaussian pulse implies a minimal spectral bandwidth larger than 9 eV translating to a corresponding spread of the detected photoelectron kinetic energies. Here, by utilizing a specially tailored narrowband reflective XUV multilayer mirror, we explore experimentally the minimal spectral width compatible with attosecond time-resolved photoelectron spectroscopy while obtaining the highest possible spectral resolution. The validity of the concept is proven by recording attosecond electron streaking traces from the direct semiconductor gallium arsenide (GaAs), with a nominal bandgap of 1.42 eV at room temperature, proving the potential of the approach for tracking charge dynamics also in these technologically highly relevant materials that previously have been inaccessible to attosecond science. PMID:27519070

  17. Automatic Reacquisition of Satellite Positions by Detecting Their Expected Streaks in Astronomical Images

    NASA Astrophysics Data System (ADS)

    Levesque, M.

    Artificial satellites, and particularly space junk, drift continuously from their known orbits. In the surveillance-of-space context, they must be observed frequently to ensure that the corresponding orbital parameter database entries are up-to-date. Autonomous ground-based optical systems are periodically tasked to observe these objects, calculate the difference between their predicted and real positions and update object orbital parameters. The real satellite positions are provided by the detection of the satellite streaks in the astronomical images specifically acquired for this purpose. This paper presents the image processing techniques used to detect and extract the satellite positions. The methodology includes several processing steps including: image background estimation and removal, star detection and removal, an iterative matched filter for streak detection, and finally false alarm rejection algorithms. This detection methodology is able to detect very faint objects. Simulated data were used to evaluate the methodology's performance and determine the sensitivity limits where the algorithm can perform detection without false alarm, which is essential to avoid corruption of the orbital parameter database.

  18. PS-1/S1 picosecond streak camera application for multichannel laser system diagnostics

    SciTech Connect

    Garanin, S G; Bel'kov, S A; Rogozhnikov, G S; Rukavishnikov, N N; Romanov, V V; Voronich, I N; Vorob'ev, N S; Gornostaev, P B; Lozovoi, V I; Shchelev, M Ya

    2014-08-31

    A PS-1/S1 picosecond image-tube streak camera (ITSC) with slit scan (streak camera), developed and manufactured at the General Physics Institute RAS, has been used to measure the spatiotemporal characteristics of ultrashort laser pulses generated by a petawatt-power laser installation 'FEMTO' at the Institute of Laser Physics Research in Sarov. It is found that such a camera is suitable for measuring the spatial and temporal parameters of single laser pulses with an accuracy of about one picosecond. It is shown that the intensity time profile of a train of picosecond pulses may be precisely defined for the pulses separated in time by a few picoseconds. The camera allows the contrast of radiation to be determined with a high (no less than 10{sup 3}) accuracy; spatial distribution of the laser pulses can be measured with an accuracy of tens of microns, and the temporal separation of single laser pulses can be identified with an accuracy of 1 – 1.5 ps. (extreme light fields and their applications)

  19. Slit-mounted LED fiducial system for rotating mirror streak cameras

    SciTech Connect

    Shaw, L.L.; Muelder, S.A.; Rivera, A.T.

    1991-01-01

    We have developed a fiducial system for rotating mirror streak cameras that utilizes light emitting diodes mounted at the slit position of the camera. The diodes are driven to the required high brightness by a unique pulse power circuit designed to provide high voltage, high current pulses 18 nanoseconds in length at a frequency of up to 2.5 megahertz. The availability of super bright light emitting diodes with a wavelength of 630 to 640 nanometers allows us to record fiducial pulses, at streaking speeds in excess of 20mm per microsecond, on all the black and white films commonly used in high speed photography. The time marks on the film record are referenced to the real time of the experiment from a clock-driver that controls the start and frequency of the fiducial pulse train and by three adjustable and discreet blanked fiducials. This paper discusses the development of this system and describes the full setup as used at LLNL. 6 refs., 4 figs.

  20. Nonlinear response of the photocathode of an x-ray streak camera to UV light

    SciTech Connect

    Kyrala, G.A.; Oro, D.M.; Studebaker, J.K.; Wood, W.M.; Schappert, G.T.; Watts, S.; Fulton, R.D.

    1994-09-01

    We have found that a potassium-iodide photocathode of an x-ray streak camera responds to UV light at {lambda}=308 nm. The photocathode surface work function, 6.5 eV, is larger than the 4 eV energy of the UV photon, hence the source of the response is interesting. We will present results on the response of a transmission type potassium-iodide photocathode to the UV light from a {lambda}308 nm, subpicosecond XeCl laser and from a {lambda}=326 nm HeCd laser. We will test for the nonlinearity of the yield to measure of the number of photons that are needed to be absorbed before a signal is recorded. We will present data on the effect of the UV irradiance on the yield, as well as on the temporal width of the recorded signal. We will give an explanation of the observation and its effect on the dynamic-range response of the streak-camera. We will show that the response is linear with the incident irradiance, up to an incident irradiance of 10{sup 8} W/cm{sup 2} and we will explain the observation.

  1. Immunodiagnosis of episomal Banana streak MY virus using polyclonal antibodies to an expressed putative coat protein.

    PubMed

    Sharma, Susheel Kumar; Kumar, P Vignesh; Baranwal, Virendra Kumar

    2014-10-01

    A cryptic Badnavirus species complex, known as banana streak viruses (BSV) poses a serious threat to banana production and genetic improvement worldwide. Due to the presence of integrated BSV sequences in the banana genome, routine detection is largely based on serological and nucleo-serological diagnostic methods which require high titre specific polyclonal antiserum. Viral structural proteins like coat protein (CP) are the best target for in vitro expression, to be used as antigen for antiserum production. However, in badnaviruses precise CP sequences are not known. In this study, two putative CP coding regions (p48 and p37) of Banana streak MY virus (BSMYV) were identified in silico by comparison with caulimoviruses, retroviruses and Rice tungro bacilliform virus. The putative CP coding region (p37) was in vitro expressed in pMAL system and affinity purified. The purified fusion protein was used as antigen for raising polyclonal antiserum in rabbit. The specificity of antiserum was confirmed in Western blots, immunosorbent electron microscopy (ISEM) and antigen coated plate-enzyme linked immunosorbent assay (ACP-ELISA). The antiserum (1:2000) was successfully used in ACP-ELISA for specific detection of BSMYV infection in field and tissue culture raised banana plants. The antiserum was also utilized in immuno-capture PCR (IC-PCR) based indexing of episomal BSMYV infection. This is the first report of in silico identification of putative CP region of BSMYV, production of polyclonal antiserum against recombinant p37 and its successful use in immunodetection.

  2. The dynamic nature and spectral characteristics of low-albedo slope streaks on Mars and their possible hydrologic implications

    NASA Astrophysics Data System (ADS)

    Mushkin, A.; Stillman, D. E.; Gillespie, A. R.; Montgomery, D. R.; Schreiber, B. C.; Hibbitts, C.

    2014-12-01

    Low-albedo down-slope streaks that form repeatedly within weekly time-scales and subsequently fade over seasonal to decadal periods are commonly observed in the tropical and mid-latitudes of Mars. 'Dry' mass-wasting processes vs. 'wet' modification of the surface by aqueous phases are the mechanisms typically considered to explain their formation. Recently, high frequency HiRISE image time-series of seasonal recurrence, incremental growth and fading of small (meter-decameter scale) slope streaks, also termed 'recurring slope lineae' (RSL), have been presented in support of a 'wet' origin likely associated with brine seepage. Here, we present new results that demonstrate comparable recurrence, incremental growth and fading characteristics over yearly time-scales for decameter-kilometer scale low-albedo slope-streaks in Lycus Sulci, Amazonis Planitia and Arabia Terra. These dynamic characteristics support the previous association of low-albedo slope streaks with brine seepage based on their geomorphic and spectral relations with surrounding unaffected slopes. Low-albedo slope streaks are typically not associated with detectable erosion or terminal, down-slope depositional activity at the resolution of 25 cm/pixel HiRISE images. CRISM observations consistently indicate that darkened slope-streak surfaces are spectrally enriched in FeOx and are void of detectable water/ice spectral absorption bands. Thus, the liquid seeps considered for the formation of meter to kilometer scale slope streaks are likely low-volume transient events that evaporate and/or freeze and sublime leaving behind a meta-stable dry precipitate that 'stains' the surface dark and may provide insights into the possible composition of such brines. Slope streak formation through a 'wet' brine seepage mechanism supports the possible presence of pressurized sub-surface aquifers that may be released via faults or cracks able to produce recurring transient discharge events during favorably warm daily

  3. The iojap gene in maize

    SciTech Connect

    Martienssen, Robert

    2001-12-01

    The classical maize mutant iojap (Iodent japonica) has variegated green and white leaves. Green sectors have cells with normal chloroplasts whereas white sectors have cells where plastids fail to differentiate. These mutant plastids, when transmitted through the female gametophyte, do not recover in the presence of wild type Iojap. We cloned the Ij locus, and we have investigated the mechanism of epigenetic inheritance and phenotypic expression. More recently, a modifier of this type of variegation, ''Inhibitor of striate'', has also been cloned. Both the iojap and inhibitor of striate proteins have homologs in bacteria and are members of ancient conserved families found in multiple species. These tools can be used to address fundamental questions of inheritance and variegation associated with this classical conundrum of maize genetics. Since the work of Rhoades there has been considerable speculation concerning the nature of the Iojap gene product, the origin of leaf variegation and the mechanism behind the material inheritance of defective plastids. This has made Iojap a textbook paradigm for cytoplasmic inheritance and nuclear-organellar interaction for almost 50 years. Cloning of the Iojap gene in maize, and homologs in other plants and bacteria, provides a new means to address the origin of heteroplastidity, variegation and cytoplasmic inheritance in higher plants.

  4. The role of maize root size in phosphorus uptake and productivity of maize/faba bean and maize/wheat intercropping systems.

    PubMed

    Zhang, Yikai; Chen, Fanjun; Li, Long; Chen, Yanhua; Liu, Bingran; Zhou, Yuling; Yuan, Lixing; Zhang, Fusuo; Mi, Guohua

    2012-11-01

    Interspecific root/rhizosphere interactions affect phosphorus (P) uptake and the productivity of maize/faba bean and maize/wheat intercropping systems. The aim of these experiments was to determine whether manipulation of maize root growth could improve the productivity of the two intercropping systems. Two near isogenic maize hybrids (the larger-rooted T149 and smaller-rooted T222) were intercropped with faba bean and wheat, under conditions of high- and low-P availability. The larger-rooted T149 showed greater competitive ability than the smaller-rooted T222 in both maize/faba bean and maize/wheat intercropping systems. The higher competitive ability of T149 improved the productivity of the maize/faba bean intercropping system in P-sufficient conditions. In maize/wheat intercropping systems, root growth, shoot biomass, and P uptake of maize were inhibited by wheat, regardless of the P-supply. Compared with T222, the larger-rooted T149 suffered less in the intercropping systems. The total biomass of the maize/wheat intercropping system was higher for wheat/T149 than for wheat/T222 under low-P conditions. These data suggested that genetic improvement of maize root size could enhance maize growth and its ability to compete for P resources in maize/faba bean and maize/wheat intercropping systems. In addition, depending on the P availability, larger maize roots could increase the productivity of intercropping systems.

  5. Introgression of chromosome segments from multiple alien species in wheat breeding lines with wheat streak mosaic virus resistance.

    PubMed

    Ali, N; Heslop-Harrison, Js Pat; Ahmad, H; Graybosch, R A; Hein, G L; Schwarzacher, T

    2016-08-01

    Pyramiding of alien-derived Wheat streak mosaic virus (WSMV) resistance and resistance enhancing genes in wheat is a cost-effective and environmentally safe strategy for disease control. PCR-based markers and cytogenetic analysis with genomic in situ hybridisation were applied to identify alien chromatin in four genetically diverse populations of wheat (Triticum aestivum) lines incorporating chromosome segments from Thinopyrum intermedium and Secale cereale (rye). Out of 20 experimental lines, 10 carried Th. intermedium chromatin as T4DL*4Ai#2S translocations, while, unexpectedly, 7 lines were positive for alien chromatin (Th. intermedium or rye) on chromosome 1B. The newly described rye 1RS chromatin, transmitted from early in the pedigree, was associated with enhanced WSMV resistance. Under field conditions, the 1RS chromatin alone showed some resistance, while together with the Th. intermedium 4Ai#2S offered superior resistance to that demonstrated by the known resistant cultivar Mace. Most alien wheat lines carry whole chromosome arms, and it is notable that these lines showed intra-arm recombination within the 1BS arm. The translocation breakpoints between 1BS and alien chromatin fell in three categories: (i) at or near to the centromere, (ii) intercalary between markers UL-Thin5 and Xgwm1130 and (iii) towards the telomere between Xgwm0911 and Xbarc194. Labelled genomic Th. intermedium DNA hybridised to the rye 1RS chromatin under high stringency conditions, indicating the presence of shared tandem repeats among the cereals. The novel small alien fragments may explain the difficulty in developing well-adapted lines carrying Wsm1 despite improved tolerance to the virus. The results will facilitate directed chromosome engineering producing agronomically desirable WSMV-resistant germplasm. PMID:27245423

  6. Introgression of chromosome segments from multiple alien species in wheat breeding lines with wheat streak mosaic virus resistance.

    PubMed

    Ali, N; Heslop-Harrison, Js Pat; Ahmad, H; Graybosch, R A; Hein, G L; Schwarzacher, T

    2016-08-01

    Pyramiding of alien-derived Wheat streak mosaic virus (WSMV) resistance and resistance enhancing genes in wheat is a cost-effective and environmentally safe strategy for disease control. PCR-based markers and cytogenetic analysis with genomic in situ hybridisation were applied to identify alien chromatin in four genetically diverse populations of wheat (Triticum aestivum) lines incorporating chromosome segments from Thinopyrum intermedium and Secale cereale (rye). Out of 20 experimental lines, 10 carried Th. intermedium chromatin as T4DL*4Ai#2S translocations, while, unexpectedly, 7 lines were positive for alien chromatin (Th. intermedium or rye) on chromosome 1B. The newly described rye 1RS chromatin, transmitted from early in the pedigree, was associated with enhanced WSMV resistance. Under field conditions, the 1RS chromatin alone showed some resistance, while together with the Th. intermedium 4Ai#2S offered superior resistance to that demonstrated by the known resistant cultivar Mace. Most alien wheat lines carry whole chromosome arms, and it is notable that these lines showed intra-arm recombination within the 1BS arm. The translocation breakpoints between 1BS and alien chromatin fell in three categories: (i) at or near to the centromere, (ii) intercalary between markers UL-Thin5 and Xgwm1130 and (iii) towards the telomere between Xgwm0911 and Xbarc194. Labelled genomic Th. intermedium DNA hybridised to the rye 1RS chromatin under high stringency conditions, indicating the presence of shared tandem repeats among the cereals. The novel small alien fragments may explain the difficulty in developing well-adapted lines carrying Wsm1 despite improved tolerance to the virus. The results will facilitate directed chromosome engineering producing agronomically desirable WSMV-resistant germplasm.

  7. Registration of maize inbred line 'GT888'

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Maize (Zea mays L.) inbred line GT888 (PI 670116) was developed and released by the USDA-ARS in cooperation with the University of Georgia, and in participation with the USDA Germplasm Enhancement of Maize (GEM) project. GT888 was derived from GEM population DK888:N11 (GEMN-0177), which has 50% tro...

  8. A meteorologically driven maize stress indicator model

    NASA Technical Reports Server (NTRS)

    Taylor, T. W.; Ravet, F. W. (Principal Investigator)

    1981-01-01

    A maize soil moisture and temperature stress model is described which was developed to serve as a meteorological data filter to alert commodity analysts to potential stress conditions in the major maize-producing areas of the world. The model also identifies optimum climatic conditions and planting/harvest problems associated with poor tractability.

  9. Use of tropical maize for bioethanol production

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Tropical maize is an alternative energy crop being considered as a feedstock for bioethanol production in the North Central and Midwest United States. Tropical maize is advantageous because it produces large amounts of soluble sugars in its stalks, creates a large amount of biomass, and requires lo...

  10. The genetic architecture of maize height

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Height is one of the most heritable and easily measured traits in maize (Zea mays L.). Given a pedigree or estimates of the genomic identity-by-state (IBS) among related plants, height is also accurately predictable. But, mapping alleles explaining natural variation in maize height remains a formida...

  11. Maize metabolic network construction and transcriptome analysis

    Technology Transfer Automated Retrieval System (TEKTRAN)

    A framework for understanding the synthesis and catalysis of metabolites and other biochemicals by proteins is crucial for unraveling the physiology of cells. To create such a framework for Zea mays ssp. mays (maize), we developed MaizeCyc a metabolic network of enzyme catalysts, proteins, carbohydr...

  12. Comparative genomics of Arabidopsis and maize: prospects and limitations

    PubMed Central

    Brendel, Volker; Kurtz, Stefan; Walbot, Virginia

    2002-01-01

    The completed Arabidopsis genome seems to be of limited value as a model for maize genomics. In addition to the expansion of repetitive sequences in maize and the lack of genomic micro-colinearity, maize-specific or highly-diverged proteins contribute to a predicted maize proteome of about 50,000 proteins, twice the size of that of Arabidopsis. PMID:11897028

  13. GPU-accelerated Faint Streak Detection for Uncued Surveillance of LEO

    NASA Astrophysics Data System (ADS)

    Zimmer, P.; Ackermann, M.; McGraw, J. T.

    2013-09-01

    By astronomical standards, small objects (<10cm) in LEO illuminated by the Sun under terminator conditions are quite bright, depositing 100's to 1000's of photons per second into small telescope apertures (< 1m diameter). The challenge in discovering these objects with no a priori knowledge of their orbit (i.e. uncued surveillance) is that their relative motion with respect to a ground-based telescope makes them appear to have large angular rates of motion, up to and exceeding 1 degree per second. Thus in even a short exposure, the signal from the object is smeared out in a streak with low signal-to-noise per pixel. Go Green Termite (GGT), Inc. of Gilroy, CA, in collaboration with the University of New Mexico (UNM), is building two proof-of-concept wide-field imaging systems to test, develop and prove a novel streak detection technique. The imaging systems are built from off-the-shelf optics and detectors resulting in a 350mm aperture and a 6 square degree field of view. For streak detection, field of view is of critical importance because the maximum exposure time on the object is limited by its crossing time. In this way, wider fields of view impact surveys for LEO objects both by increasing the survey volume and increasing sensitivity. Using our newly GPU-accelerated detection scheme, the proof-of-concept systems are expected to be able to detect objects fainter than 12th magnitude moving at 1 degree per second and possibly as faint as 13th magnitude for slower moving objects. Meter-class optical systems using these techniques should be able to detect objects fainter than 14th magnitude, which is roughly equivalent to a golf ball at 1000km altitude. The goal of this work is to demonstrate a scalable system for near real time detection of fast moving objects that can be then handed off to other instruments capable of tracking and characterizing them. The two proof-of-concept systems, separated by ~30km, work together by taking simultaneous images of the same

  14. Analysis of Dark Slope Streaks on Mars based on Multitemporal HRSC Data

    NASA Astrophysics Data System (ADS)

    Schreiner, Björn; van Gasselt, Stephan; Jan-Peter, Muller

    2016-04-01

    Recurring slope lineae (RSL) on Mars are dark and narrow downhill oriented surface features found in equatorial regions (1) associated with water or hydrated salt flows (2). On the other hand there are Dark Slope Streaks which seem to be dry avalanches on dust covered slopes (3). The origin of both ist still under discussion. We found linear features in eastern Noctis Labyrinthus region (6°S, 265°E) with lengths of up to several kilometres and lateral extensions of 20-30 metres. As described by (4), RSL fade and recur in the same location over multiple Mars years. Similarily, Dark Slope Streaks form on at least annual to decade-long timescales (5). During 10 years of HRSC observation time (2005-2015) several linear features in Noctis Labyrinthus changed in visibility. Slope parameters and seasonal illumination conditions are investigated based on a digital elevation model derived from HRSC data. For large datasets a feature identification is presented which involves spatial filtering in conjunction with elevation data analysis. The research leading to these results has received funding from the European Union's Seventh Framework Programme (FP7/2007-2013) under iMars grant agreement n° 607379. (1) McEwen, A.S., et al. (2014): Recurring slope lineae in equatorial regions of Mars. Nat. Geosci 7: 53-58. (2) Ojha, L. et al. (2015): Spectral evidence for hydrated salts in recurring slope linear on Mars. Nat. Geosci, DOI:10.1038/NGEO2546. (3) Sullivan, R. et al. (2001). Mass Movement Slope Streaks Imaged by the Mars Orbiter Camera. J. Geophys. Res., 106(E10), 23,607-23,633. (4) McEwen, A.S., et al. (2011): Seasonal Flows on Warm Martian Slopes. Science, Vol. 333, Issue 6043, pp. 740-743. (5) Malin, M.C.; Edgett, K.S. (2001). Mars Global Surveyor Mars Orbiter Camera: Interplanetary cruise through primary mission. J. Geophys. Res., 106(E10), 23,429-23,570.

  15. Heterogeneity of Maize Cytoplasmic Genomes among Male-Sterile Cytoplasms

    PubMed Central

    Pring, D. R.; Levings, C. S.

    1978-01-01

    Maize mitochondrial and chloroplast DNA's were prepared from normal (fertile) lines or single crosses and from members of the T, C, and S groups of male-sterile cytoplasms. Restriction endonucleases HindIII, BamI, EcoRI, and SalI were used to restrict the DNA, and the resultant fragments were electrophoresed in agarose gels. The results show that the N (fertile), T, C, and S cytoplasms each contained distinct mitochondrial DNA (mtDNA). These distinctive patterns were unaffected by nuclear genotype. No evidence of paternal inheritance of mtDNA was observed. Chloroplast DNA (ctDNA) from the N, C, and T cytoplasms was indistinguishable by HindIII, SalI, or EcoRI endonuclease digestion. The S cytoplasm ctDNA, however, was slightly different from that of other cytoplasms, as indicated by a slight displacement of one band in HindIII digests. The molecular weight of maize ctDNA was estimated to be as high as 88 x 106. Estimates of the minimum molecular weight of maize mtDNA ranged from 116–131 x 106, but the patterns were to complex for an unambiguous determination. Based on HindIII data, a comparison of the molecular weight of mtDNA bands common to the N, T. C, and S cytoplasms suggests that C cytoplasm most closely resembles N cytoplasm. The T and S sources are more divergent from the C and N cytoplasms. These results indicate a possible gradation of relatedness among male-sterile cytoplasms. The marked variation in mtDNA, with apparently less variation in ctDNA, represents circumstantial, but compelling, evidence that mtDNA may be involved in the male sterility and disease susceptibility traits in maize. PMID:17248823

  16. Vascular Streak Dieback of cacao in Southeast Asia and Melanesia: in planta detection of the pathogen and a new taxonomy.

    PubMed

    Samuels, Gary J; Ismaiel, Adnan; Rosmana, Ade; Junaid, Muhammad; Guest, David; McMahon, Peter; Keane, Philip; Purwantara, Agus; Lambert, Smilja; Rodriguez-Carres, Marianela; Cubeta, Marc A

    2012-01-01

    Vascular Streak Dieback (VSD) disease of cacao (Theobroma cacao) in Southeast Asia and Melanesia is caused by a basidiomycete (Ceratobasidiales) fungus Oncobasidium theobromae (syn. =Thanatephorus theobromae). The most characteristic symptoms of the disease are green-spotted leaf chlorosis or, commonly since about 2004, necrotic blotches, followed by senescence of leaves beginning on the second or third flush behind the shoot apex, and blackening of infected xylem in the vascular traces at the leaf scars resulting from the abscission of infected leaves. Eventually the shoot apex is killed and infected branches die. In susceptible cacao the fungus may grow through the xylem down into the main stem and kill a mature cacao tree. Infections in the stem of young plants prior to the formation of the first 3-4 lateral branches usually kill the plant. Basidiospores released from corticioid basidiomata developed on leaf scars or along cracks in the main vein of infected leaves infect young leaves. The pathogen commonly infects cacao but there are rare reports from avocado. As both crops are introduced to the region, the pathogen is suspected to occur asymptomatically in native vegetation. The pathogen is readily isolated but cultures cannot be maintained. In this study, DNA was extracted from pure cultures of O. theobromae obtained from infected cacao plants sampled from Indonesia. The internal transcribed spacer region (ITS), consisting of ITS1, 5.8S ribosomal RNA and ITS2, and a portion of nuclear large subunit (LSU) were sequenced. Phylogenetic analysis of ITS sequences placed O. theobromae sister to Ceratobasidium anastomosis groups AG-A, AG-Bo, and AG-K with high posterior probability. Therefore the new combination Ceratobasidium theobromae is proposed. A PCR-based protocol was developed to detect and identify C. theobromae in plant tissue of cacao enabling early detection of the pathogen in plants. A second species of Ceratobasidium, Ceratobasidium ramicola

  17. Resistance to wheat streak mosaic virus and Triticum mosaic virus in wheat lines carrying Wsm1 and Wsm3

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Wheat streak mosaic virus (WSMV) and Triticum mosaic virus (TriMV) are important viruses of wheat (Triticum aestivum L.) in the Great Plains of United States. In addition to agronomic practices to prevent damage from these viruses, temperature sensitive resistance genes Wsm1, Wsm2 and Wsm3, have bee...

  18. Particle streak velocimetry-optical coherence tomography: a novel method for multidimensional imaging of microscale fluid flows

    PubMed Central

    Zhou, Kevin C.; Huang, Brendan K.; Gamm, Ute A.; Bhandari, Vineet; Khokha, Mustafa K.; Choma, Michael A.

    2016-01-01

    We present a new OCT method for flow speed quantification and directional velocimetry: particle streak velocimetry-OCT (PSV-OCT). PSV-OCT generates two-dimensional, 2.5-vector component (vx,|vy|,vz) maps of microscale flow velocity fields. Knowledge of 2.5-vector components also enables the estimation of total flow speed. The enabling insight behind PSV-OCT is that tracer particles in sparsely-seeded fluid flow trace out streaks in (x,z,t)-space. The streak orientations in x-t and z-t yield vx and vz, respectively. The in-plane (x-z plane) residence time yields the out-of-plane speed |vy|. Vector component values are generated by fitting streaks to a model of image formation that incorporates equations of motion in 3D space. We demonstrate cross-sectional estimation of (vx,|vy|,vz) in two important animal models in ciliary biology: Xenopus embryos (tadpoles) and mouse trachea. PMID:27375926

  19. A detection method for streak artifacts and radiological noise in a non-uniform region in a CT image.

    PubMed

    Imai, Kuniharu; Ikeda, Mitsuru; Enchi, Yukihiro; Niimi, Takanaga

    2010-01-01

    By using the CT images obtained by subtracting two CT images acquired under the same conditions and slice locations, we have devised a method for detecting streak artifacts in non-uniform regions and only radiological noise components in CT images. A chest phantom was scanned using 16- and 64-multidetector row helical CT scanners with various mAs values at 120kVp. The upper lung slice image was employed as a target image for evaluating the streak artifacts and radiological noise. One hundred parallel line segments with a length of 80 pixels were placed on the subtracted CT image, and the largest CT value in each CT value profile was employed as a feature variable of the streak artifacts; these feature variables were analyzed with the extreme value theory (Gumbel distribution). To detect only the radiological noise, all CT values contained in the 100 line profile were plotted on normal probability paper and the standard deviation was estimated from the inclination of its fitted line for the CT value plots. The two detection methods devised in this study were able to evaluate the streak artifacts and radiological noise in the CT images with high accuracy.

  20. Evaluation of triticale accessions for resistance to wheat bacterial leaf streak caused by Xanthomonas translucens pv. undulosa

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The bacterium Xanthomonas translucens pv. undulosa (Xtu) causes bacterial leaf streak (BLS) on wheat and other small grains. Several triticale accessions were reported to possess high levels of resistance to wheat Xtu strains. In this study, we evaluated a worldwide collection of 502 triticale acces...

  1. Compositions of Low Albedo Intracrater Materials and Wind Streaks on Mars: Examination of MGS TES Data in Western Arabia Terra

    NASA Technical Reports Server (NTRS)

    Bandfield, J. L.; Wyatt, M. B.; Christensen, P.; McSween, H. Y., Jr.

    2001-01-01

    Basalt and andesite surface compositions are identified within individual low albedo intracrater features and adjacent dark wind streaks. High resolution mapping of compositional heterogeneities may help constrain origin hypotheses for these features. Additional information is contained in the original extended abstract.

  2. Identification of distinct functions of Wheat streak mosaic virus coat protein in virion assembly and virus movement

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Wheat streak mosaic virus (WSMV) is the type member of Tritimovirus genus of the family Potyviridae. The WSMV coat protein (CP) was subjected to point and deletion mutation analyses. WSMV mutants changing aspartic acid residues at amino acid (aa) positions 289, 290, 326, 333, and 334 to alanine elic...

  3. Wheat streak mosaic virus-encoded NIa-Pro and coat protein are involved in virus superinfection exclusion

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Cross protection or superinfection exclusion (SE) is defined as the phenomenon whereby initial infection by one virus prevents subsequent infection by closely related viruses. The mechanisms of SE are just beginning to be understood. Wheat streak mosaic virus (WSMV; genus: Tritimovirus; family: Poty...

  4. Genomic and biological characterization of Tomato necrotic streak virus, a novel subgroup 2 ilarvirus infecting tomato in Florida

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Tomato necrotic streak virus (TomNSV) is a recently described ilarvirus that was detected in tomato in Florida. The full TomNSV genome sequence revealed it to be a novel subgroup 2 ilarvirus with little nucleotide identity to other previously reported tomato-infecting ilarviruses. Experimental hos...

  5. A 'chemotactic dipole' mechanism for large-scale vortex motion during primitive streak formation in the chick embryo.

    PubMed

    Sandersius, S A; Chuai, M; Weijer, C J; Newman, T J

    2011-08-01

    Primitive streak formation in the chick embryo involves significant coordinated cell movement lateral to the streak, in addition to the posterior-anterior movement of cells in the streak proper. Cells lateral to the streak are observed to undergo 'polonaise movements', i.e. two large counter-rotating vortices, reminiscent of eddies in a fluid. In this paper, we propose a mechanism for these movement patterns which relies on chemotactic signals emitted by a dipolar configuration of cells in the posterior region of the epiblast. The 'chemotactic dipole' consists of adjacent regions of cells emitting chemo-attractants and chemo-repellents. We motivate this idea using a mathematical analogy between chemotaxis and electrostatics, and test this idea using large-scale computer simulations. We implement active cell response to both neighboring mechanical interactions and chemotactic gradients using the Subcellular Element Model. Simulations show the emergence of large-scale vortices of cell movement. The length and time scales of vortex formation are in reasonable agreement with experimental data. We also provide quantitative estimates for the robustness of the chemotaxis dipole mechanism, which indicate that the mechanism has an error tolerance of about 10% to variation in chemotactic parameters, assuming that only 1% of the cell population is involved in emitting signals. This tolerance increases for larger populations of cells emitting signals.

  6. Particle streak velocimetry-optical coherence tomography: a novel method for multidimensional imaging of microscale fluid flows.

    PubMed

    Zhou, Kevin C; Huang, Brendan K; Gamm, Ute A; Bhandari, Vineet; Khokha, Mustafa K; Choma, Michael A

    2016-04-01

    We present a new OCT method for flow speed quantification and directional velocimetry: particle streak velocimetry-OCT (PSV-OCT). PSV-OCT generates two-dimensional, 2.5-vector component (vx ,|vy |,vz ) maps of microscale flow velocity fields. Knowledge of 2.5-vector components also enables the estimation of total flow speed. The enabling insight behind PSV-OCT is that tracer particles in sparsely-seeded fluid flow trace out streaks in (x,z,t)-space. The streak orientations in x-t and z-t yield vx and vz , respectively. The in-plane (x-z plane) residence time yields the out-of-plane speed |vy |. Vector component values are generated by fitting streaks to a model of image formation that incorporates equations of motion in 3D space. We demonstrate cross-sectional estimation of (vx ,|vy |,vz ) in two important animal models in ciliary biology: Xenopus embryos (tadpoles) and mouse trachea.

  7. Wheat streak mosaic virus P1: Defining the minimal region required for the suppression of RNA silencing activity

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Wheat streak mosaic virus (WSMV) is the most economically important wheat virus in the Great Plains region of USA. WSMV is the type species of the genus Tritimovirus in the family Potyviridae, and is transmitted by the wheat curl mite, Aceria tosichella Keifer. Previously, we reported that WSMV P1 f...

  8. Resolution limitations and optimization of the ITT F4157 streak tube focus for fast (10 ps) operation

    SciTech Connect

    Lerche, R.A.; Grasz, E.L.; Griffith, R.L.; Simpson, R.A.; Posey, R.

    1987-11-01

    The ITT F4157 image tube is biased at voltages far from the original design for operation in an ultrafast (10 ps) streak camera. Its output resolution at streak camera operating potentials has been measured as a function of input slit width, incident-light wavelength, and focus-grid voltage. The results are similar to those reported for the RCA C73435 streak tube. Indeed, the two tubes can be substituted for each other with minor mechanical modifications. The temporal resolution is insensitive to focus-grid voltage for a narrow (50 ..mu..m) input slit, but is very sensitive to focus-grid voltage for a wide (500 ..mu..m) input slit. Spatial resolution is nearly independent of focus-grid voltage for values that give good temporal resolution. Both temporal and spatial resolution depend on the incident-light wavelength. Streak camera operation is simulated with a computer program that calculates photoelectron trajectories. Electron ray tracing describes the observed effects of slit width, incident-light wavelength, and focus-grid voltage on the output resolution. 6 refs., 10 figs., 1 tab.

  9. Modified ecometric technique (four-quadrant sequential streak) to evaluate Campylobacter enrichment broth proficiency in suppressing background microflora

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Ecometric technique is a semi-quantitative scoring method used for quality control of culture media in microbiological laboratories. The technique involves inoculation with defined populations of specific culture onto solid media via a standardized chronological streaking technique, leading to ever-...

  10. Environmental factors influencing the development of black leaf streak (Mycosphaerella fijiensis Morelet) on bananas in Puerto Rico.

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The effects of environmental factors on the development of black leaf streak (BLS) were studied in Puerto Rico under field conditions. Environmental factors evaluated included temperature, relative humidity, rainfall and solar radiation. Their effect on BLS was determined by recording the youngest...

  11. A quill vibrating mechanism for a sounding apparatus in the streaked tenrec (Hemicentetes semispinosus).

    PubMed

    Endo, Hideki; Koyabu, Daisuke; Kimura, Junpei; Rakotondraparany, Felix; Matsui, Atsushi; Yonezawa, Takahiro; Shinohara, Akio; Hasegawa, Masami

    2010-05-01

    The streaked tenrec (Hemicentetes semispinosus) is equipped with a quill vibrating mechanism on the dorsal side of the caudal trunk that has evolved as an extraordinary sounding apparatus for communication. An arrangement of 15 or 16 light-brown quills was observed. Thickened cutaneous muscles were confirmed beneath quills. We named this structure the "quill vibrator disc" (QVD). The QVD was 16.8 mm long and 8.55 mm wide in a typical adult. Longitudinal musculature symmetrical about the sagittal plane was developed in the QVD. Myocytes were found immunohistochemically to contain mainly fast myosin but not slow myosin. These findings indicate that the QVD is a specialized apparatus in the cutaneous muscle that contributes to the vibration of quills and to the production of sound for communication.

  12. Carrier-Envelope-Phase Characterization for an Isolated Attosecond Pulse by Angular Streaking

    NASA Astrophysics Data System (ADS)

    He, Pei-Lun; Ruiz, Camilo; He, Feng

    2016-05-01

    The carrier envelope phase (CEP) is a crucial parameter for a few-cycle laser pulse since it substantially determines the laser waveform. Stepping forward from infrared to extreme ultraviolet (EUV) pulses, we propose a strategy to directly characterize the CEP of an isolated attosecond pulse (IAP) by numerically simulating the tunneling ionization of a hydrogen atom in a combined IAP and phase-stabilized circularly polarized IR laser pulse. The fine modulations of the combined laser fields, due to the variation of the CEP of the IAP, are exponentially enlarged onto the distinct time-dependent tunneling ionization rate. Electrons released at different time with distinct tunneling ionization rates are angularly streaked to different directions. By measuring the resulting photoelectron momentum distribution, the CEP of the IAP can be retrieved. The characterization of the CEP of an IAP will open the possibility of capturing sub-EUV-cycle dynamics.

  13. Streaks, multiplets, and holes: High-resolution spatio-temporal behavior of Parkfield seismicity

    USGS Publications Warehouse

    Waldhauser, F.; Ellsworth, W.L.; Schaff, D.P.; Cole, A.

    2004-01-01

    Double-difference locations of ???8000 earthquakes from 1969-2002 on the Parkfield section of the San Andreas Fault reveal detailed fault structures and seismicity that is, although complex, highly organized in both space and time. Distinctive features of the seismicity include: 1) multiple recurrence of earthquakes of the same size at precisely the same location on the fault (multiplets), implying frictional or geometric controls on their location and size; 2) sub-horizontal alignments of hypocenters along the fault plane (streaks), suggestive of rheological transitions within the fault zone and/or stress concentrations between locked and creeping areas; 3) regions devoid of microearthquakes with typical dimensions of 1-5 km (holes), one of which contains the M6 1966 Parkfield earthquake hypocenter. These features represent long lived structures that persist through many cycles of individual event. Copyright 2004 by the American Geophysical Union.

  14. Carrier-Envelope-Phase Characterization for an Isolated Attosecond Pulse by Angular Streaking.

    PubMed

    He, Pei-Lun; Ruiz, Camilo; He, Feng

    2016-05-20

    The carrier envelope phase (CEP) is a crucial parameter for a few-cycle laser pulse since it substantially determines the laser waveform. Stepping forward from infrared to extreme ultraviolet (EUV) pulses, we propose a strategy to directly characterize the CEP of an isolated attosecond pulse (IAP) by numerically simulating the tunneling ionization of a hydrogen atom in a combined IAP and phase-stabilized circularly polarized IR laser pulse. The fine modulations of the combined laser fields, due to the variation of the CEP of the IAP, are exponentially enlarged onto the distinct time-dependent tunneling ionization rate. Electrons released at different time with distinct tunneling ionization rates are angularly streaked to different directions. By measuring the resulting photoelectron momentum distribution, the CEP of the IAP can be retrieved. The characterization of the CEP of an IAP will open the possibility of capturing sub-EUV-cycle dynamics. PMID:27258867

  15. Time-resolved measurements with streaked diffraction patterns from electrons generated in laser plasma wakefield

    NASA Astrophysics Data System (ADS)

    He, Zhaohan; Nees, John; Hou, Bixue; Krushelnick, Karl; Thomas, Alec; Beaurepaire, Benoît; Malka, Victor; Faure, Jérôme

    2013-10-01

    Femtosecond bunches of electrons with relativistic to ultra-relativistic energies can be robustly produced in laser plasma wakefield accelerators (LWFA). Scaling the electron energy down to sub-relativistic and MeV level using a millijoule laser system will make such electron source a promising candidate for ultrafast electron diffraction (UED) applications due to the intrinsic short bunch duration and perfect synchronization with the optical pump. Recent results of electron diffraction from a single crystal gold foil, using LWFA electrons driven by 8-mJ, 35-fs laser pulses at 500 Hz, will be presented. The accelerated electrons were collimated with a solenoid magnetic lens. By applying a small-angle tilt to the magnetic lens, the diffraction pattern can be streaked such that the temporal evolution is separated spatially on the detector screen after propagation. The observable time window and achievable temporal resolution are studied in pump-probe measurements of photo-induced heating on the gold foil.

  16. August Rauber (1841-1917): from the primitive streak to Cellularmechanik.

    PubMed

    Brauckmann, Sabine

    2006-01-01

    In the early 19th century Karl Ernst von Baer initiated a new research program searching for the mechanisms by which an egg transforms itself into an embryo. August Rauber (1841-1917) took up this challenge. He considered the phylogenetic principle as the right tool to explain the similitude of embryogenetic processes. In extending Baer's approach, he combined comparative embryology and histology in his studies of avian and mammalian embryos. His earlier work demonstrated that the two-layered chick embryo is a modified gastrula and not a "disc" as Wilhelm His had claimed. From the 1880s onwards, he concentrated on the issue of how the development of germ layers is related to tissue differentiation. To address this, he studied the blastopore, epiblast, primitive streak, teratology and the relative importance of nucleus and cytoplasm in heredity. This paper reconstructs some of Rauber's work and concludes that his observations and reflections constituted a new approach combining embryology and histology with "phylogenetic" reasoning.

  17. The genome organization of lucerne transient streak and turnip rosette sobemoviruses revisited.

    PubMed

    Sõmera, Merike; Truve, Erkki

    2013-03-01

    Unlike other sobemoviruses, lucerne transient streak virus (LTSV) and turnip rosette virus (TRoV) have been reported to contain two successive ORF1s (denoted as ORF1a and ORF1b) instead of a single ORF1. Also, their next ORF (ORF2a/2a2b) has been mapped to a region ca. 200 nucleotides downstream from that of other sobemoviruses, leading to the lack of transmembrane segments at the N-termini of P2a/2a2b. In the current study, we resequenced this region for TRoV and LTSV. The hypothetical beginning of ORF1b was mapped as the beginning of ORF2a/2a2b for both TRoV and LTSV. Computional analysis revealed transmembrane segments at the N-termini of the TRoV and LTSV polyproteins. PMID:23111554

  18. Streaking temporal double-slit interference by an orthogonal two-color laser field.

    PubMed

    Richter, Martin; Kunitski, Maksim; Schöffler, Markus; Jahnke, Till; Schmidt, Lothar P H; Li, Min; Liu, Yunquan; Dörner, Reinhard

    2015-04-10

    We investigate electron momentum distributions from single ionization of Ar by two orthogonally polarized laser pulses of different color. The two-color scheme is used to experimentally control the interference between electron wave packets released at different times within one laser cycle. This intracycle interference pattern is typically hard to resolve in an experiment. With the two-color control scheme, these features become the dominant contribution to the electron momentum distribution. Furthermore, the second color can be used for streaking of the otherwise interfering wave packets establishing a which-way marker. Our investigation shows that the visibility of the interference fringes depends on the degree of the which-way information determined by the controllable phase between the two pulses.

  19. Streaking Temporal Double-Slit Interference by an Orthogonal Two-Color Laser Field

    NASA Astrophysics Data System (ADS)

    Richter, Martin; Kunitski, Maksim; Schöffler, Markus; Jahnke, Till; Schmidt, Lothar P. H.; Li, Min; Liu, Yunquan; Dörner, Reinhard

    2015-04-01

    We investigate electron momentum distributions from single ionization of Ar by two orthogonally polarized laser pulses of different color. The two-color scheme is used to experimentally control the interference between electron wave packets released at different times within one laser cycle. This intracycle interference pattern is typically hard to resolve in an experiment. With the two-color control scheme, these features become the dominant contribution to the electron momentum distribution. Furthermore, the second color can be used for streaking of the otherwise interfering wave packets establishing a which-way marker. Our investigation shows that the visibility of the interference fringes depends on the degree of the which-way information determined by the controllable phase between the two pulses.

  20. Myosin II-mediated cell shape changes and cell intercalation contribute to primitive streak formation

    PubMed Central

    Song, Feifei; Sang, Helen M.; Martin, René; Knölker, Hans-Joachim; MacDonald, Michael P; Weijer, Cornelis J

    2016-01-01

    Primitive streak formation in the chick embryo involves large scale highly coordinated flows of over 100.000 cells in the epiblast. These large scale tissue flows and deformations can be correlated with specific anisotropic cell behaviours in the forming mesendoderm through a combined light-sheet microscopy and computational analysis. Relevant behaviours include apical contraction, elongation along the apical-basal axis followed by ingression as well as asynchronous directional cell intercalation of small groups of mesendoderm cells. Cell intercalation is associated with sequential, directional contraction of apical junctions, the onset, localisation and direction of which correlate strongly with the appearance of active Myosin II cables in aligned apical junctions in neighbouring cells. Use of a class specific Myosin inhibitors and gene specific knockdowns show that apical contraction and intercalation are Myosin II dependent and also reveal critical roles for Myosin I and Myosin V family members in the assembly of junctional Myosin II cables. PMID:25812521

  1. Absolutely calibrated soft-x-ray streak camera for laser-fusion applications

    SciTech Connect

    Kauffman, R.L.; Medecki, H.; Stradling, G.

    1982-01-01

    The intensity output of a soft-x-ray streak camera was calibrated (SXRSC) in order to make absolute flux measurements of x rays emitted from laser-produced plasmas. The SXRSC developed at LLNL is used to time-resolve x-ray pulses to better than 20 ps. The SXRSC uses a Au photocathode on a thin carbon substrate which is sensitive to x rays from 100 eV to greater than 10 keV. Calibrations are done in the dynamic mode using a small laser-produced x-ray source. The SXRSC is calibrated by comparing its integrated signal to the output of calibrated x-ray diodes monitoring the source strength. The measured SXRSC response is linear over greater than two orders of magnitude. Using these calibrations, absolute intensities can be measured to an accuracy of +-30%.

  2. The complete nucleotide sequence and genome organization of pea streak virus (genus Carlavirus).

    PubMed

    Su, Li; Li, Zhengnan; Bernardy, Mike; Wiersma, Paul A; Cheng, Zhihui; Xiang, Yu

    2015-10-01

    Pea streak virus (PeSV) is a member of the genus Carlavirus in the family Betaflexiviridae. Here, the first complete genome sequence of PeSV was determined by deep sequencing of a cDNA library constructed from dsRNA extracted from a PeSV-infected sample and Rapid Amplification of cDNA Ends (RACE) PCR. The PeSV genome consists of 8041 nucleotides excluding the poly(A) tail and contains six open reading frames (ORFs). The putative peptide encoded by the PeSV ORF6 has an estimated molecular mass of 6.6 kDa and shows no similarity to any known proteins. This differs from typical carlaviruses, whose ORF6 encodes a 12- to 18-kDa cysteine-rich nucleic-acid-binding protein.

  3. A genome-wide association study for partial resistance to maize common rust

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Quantitative resistance to maize common rust (causal agent Puccinia sorghi) was assessed in an association mapping population of 274 diverse inbred lines. Resistance to common rust was found to be moderately correlated with resistance to three other diseases and with the severity of the hypersensiti...

  4. Using Maize chlorotic dwarf virus to explore future frontiers in plant virology

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Maize chlorotic dwarf virus (MCDV) causes a chlorosis and stunting disease of corn throughout the Midwest United States. It is a waikavirus transmitted by the leafhopper Graminella nigrifrons. Although waikaviruses are economically important viruses in corn and rice, little is known about the viru...

  5. Streaked x-ray spectrometer having a discrete selection of Bragg geometries for Omega

    SciTech Connect

    Millecchia, M.; Regan, S. P.; Bahr, R. E.; Romanofsky, M.; Sorce, C.

    2012-10-15

    The streaked x-ray spectrometer (SXS) is used with streak cameras [D. H. Kalantar, P. M. Bell, R. L. Costa, B. A. Hammel, O. L. Landen, T. J. Orzechowski, J. D. Hares, and A. K. L. Dymoke-Bradshaw, in 22nd International Congress on High-Speed Photography and Photonics, edited by D. L. Paisley and A. M. Frank (SPIE, Bellingham, WA, 1997), Vol. 2869, p. 680] positioned with a ten-inch manipulator on OMEGA [T. R. Boehly et al., Opt. Commun. 133, 495 (1997)] and OMEGA EP [L. J. Waxer et al., Presented at CLEO/QELS 2008, San Jose, CA, 4-9 May 2008 (Paper JThB1)] for time-resolved, x-ray spectroscopy of laser-produced plasmas in the 1.4- to 20-keV photon-energy range. These experiments require measuring a portion of this photon-energy range to monitor a particular emission or absorption feature of interest. The SXS relies on a pinned mechanical reference system to create a discrete set of Bragg reflection geometries for a variety of crystals. A wide selection of spectral windows is achieved accurately and efficiently using this technique. It replaces the previous spectrometer designs that had a continuous Bragg angle adjustment and required a tedious alignment calibration procedure. The number of spectral windows needed for the SXS was determined by studying the spectral ranges selected by OMEGA users over the last decade. These selections are easily configured in the SXS using one of the 25 discrete Bragg reflection geometries and one of the six types of Bragg crystals, including two curved crystals.

  6. Tracing dynamics of laser-induced fields on ultrathin foils using complementary imaging with streak deflectometry

    NASA Astrophysics Data System (ADS)

    Abicht, F.; Braenzel, J.; Priebe, G.; Koschitzki, Ch.; Andreev, A. A.; Nickles, P. V.; Sander, W.; Schnürer, M.

    2016-09-01

    We present a detailed study of the electric and magnetic fields, which are created on plasma vacuum interfaces as a result of highly intense laser-matter interactions. For the field generation ultrathin polymer foils (30-50 nm) were irradiated with high intensity femtosecond (1019 - 1020 W /cm2 ) and picosecond (˜1017 W /cm2 ) laser pulses with ultrahigh contrast (1010 - 1011 ). To determine the temporal evolution and the spatial distribution of these fields the proton streak deflectometry method has been developed further and applied in two different imaging configurations. It enabled us to gather complementary information about the investigated field structure, in particular about the influence of different field components (parallel and normal to the target surface) and the impact of a moving ion front. The applied ultrahigh laser contrast significantly increased the reproducibility of the experiment and improved the accuracy of the imaging method. In order to explain the experimental observations, which were obtained by applying ultrashort laser pulses, two different analytical models have been studied in detail. Their ability to reproduce the streak deflectometry measurements was tested on the basis of three-dimensional particle simulations. A modification and combination of the two models allowed for an extensive and accurate reproduction of the experimental results in both imaging configurations. The controlled change of the laser pulse duration from 50 femtoseconds to 2.7 picoseconds led to a transition of the dominating force acting on the probing proton beam at the rear side of the polymer foil. In the picosecond case the (v ⇀ x B ⇀ ) -term of the Lorentz force dominated over the counteracting E ⇀-field and was responsible for the direction of the net force. The applied proton deflectometry method allowed for an unambiguous determination of the magnetic field polarity at the rear side of the ultrathin foil.

  7. Streaked x-ray spectrometer having a discrete selection of Bragg geometries for Omega.

    PubMed

    Millecchia, M; Regan, S P; Bahr, R E; Romanofsky, M; Sorce, C

    2012-10-01

    The streaked x-ray spectrometer (SXS) is used with streak cameras [D. H. Kalantar, P. M. Bell, R. L. Costa, B. A. Hammel, O. L. Landen, T. J. Orzechowski, J. D. Hares, and A. K. L. Dymoke-Bradshaw, in 22nd International Congress on High-Speed Photography and Photonics, edited by D. L. Paisley and A. M. Frank (SPIE, Bellingham, WA, 1997), Vol. 2869, p. 680] positioned with a ten-inch manipulator on OMEGA [T. R. Boehly et al., Opt. Commun. 133, 495 (1997)] and OMEGA EP [L. J. Waxer et al., Presented at CLEO∕QELS 2008, San Jose, CA, 4-9 May 2008 (Paper JThB1)] for time-resolved, x-ray spectroscopy of laser-produced plasmas in the 1.4- to 20-keV photon-energy range. These experiments require measuring a portion of this photon-energy range to monitor a particular emission or absorption feature of interest. The SXS relies on a pinned mechanical reference system to create a discrete set of Bragg reflection geometries for a variety of crystals. A wide selection of spectral windows is achieved accurately and efficiently using this technique. It replaces the previous spectrometer designs that had a continuous Bragg angle adjustment and required a tedious alignment calibration procedure. The number of spectral windows needed for the SXS was determined by studying the spectral ranges selected by OMEGA users over the last decade. These selections are easily configured in the SXS using one of the 25 discrete Bragg reflection geometries and one of the six types of Bragg crystals, including two curved crystals. PMID:23126929

  8. INTEGRATED WEED CONTROL IN MAIZE.

    PubMed

    Latré, J; Dewitte, K; Derycke, V; De Roo, B; Haesaert, G

    2015-01-01

    Integrated pest management has been implemented as a general practice by EU legislation. As weed control actually is the most important crop protection measure in maize for Western Europe, the new legislation will have its impact. The question is of course which systems can be successfully implemented in practice with respect to labour efficiency and economical parameters. During 3 successive growing seasons (2007, 2008, 2009) weed control in maize was evaluated, the main focus was put on different techniques of integrated weed control and was compared with chemical weed control. Additionally, during 4 successive growing seasons (2011, 2012, 2013 and 2014) two objects based on integrated weed control and two objects based on mechanical weed control were compared to about twenty different objects of conventional chemical weed control. One of the objects based on mechanical weed control consisted of treatment with the flex-tine harrow before and after emergence in combination with chemical weed control at a reduced rate in 3-4 leave stage. The second one consisted of broadcast mechanical treatments before and after emergence followed by a final in-row application of herbicides and an inter-row cultivation at 6-7(8) leave stage. All trials were conducted on the Experimental farm of Bottelare HoGent-UGent on a sandy loam soil. Maize was growing in 1/3 crop rotation. The effect on weed growth as well as the economic impact of the different applications was evaluated. Combining chemical and mechanical weed control is a possible option in conventional farming but the disadvantages must be taken into account. A better planned weed control based on the real present weed-population in combination with a carefully thought-out choice of herbicides should also be considered as an IPM--approach.

  9. INTEGRATED WEED CONTROL IN MAIZE.

    PubMed

    Latré, J; Dewitte, K; Derycke, V; De Roo, B; Haesaert, G

    2015-01-01

    Integrated pest management has been implemented as a general practice by EU legislation. As weed control actually is the most important crop protection measure in maize for Western Europe, the new legislation will have its impact. The question is of course which systems can be successfully implemented in practice with respect to labour efficiency and economical parameters. During 3 successive growing seasons (2007, 2008, 2009) weed control in maize was evaluated, the main focus was put on different techniques of integrated weed control and was compared with chemical weed control. Additionally, during 4 successive growing seasons (2011, 2012, 2013 and 2014) two objects based on integrated weed control and two objects based on mechanical weed control were compared to about twenty different objects of conventional chemical weed control. One of the objects based on mechanical weed control consisted of treatment with the flex-tine harrow before and after emergence in combination with chemical weed control at a reduced rate in 3-4 leave stage. The second one consisted of broadcast mechanical treatments before and after emergence followed by a final in-row application of herbicides and an inter-row cultivation at 6-7(8) leave stage. All trials were conducted on the Experimental farm of Bottelare HoGent-UGent on a sandy loam soil. Maize was growing in 1/3 crop rotation. The effect on weed growth as well as the economic impact of the different applications was evaluated. Combining chemical and mechanical weed control is a possible option in conventional farming but the disadvantages must be taken into account. A better planned weed control based on the real present weed-population in combination with a carefully thought-out choice of herbicides should also be considered as an IPM--approach. PMID:27145588

  10. Characterization and Comparison of Clavibacter michiganensis subsp. nebraskensis Strains Recovered from Epiphytic and Symptomatic Infections of Maize in Iowa

    PubMed Central

    Robertson, Alison E.

    2015-01-01

    Clavibacter michiganensis subsp. nebraskensis (Cmn), the causal organism of Goss’s wilt and leaf blight of maize, can be detected in the phyllosphere of its host prior to disease development. We compared the morphology and pathogenicity of 37 putative isolates of Cmn recovered from asymptomatic and symptomatic maize leaves. Thirty-three of the isolates produced mucoid orange colonies, irrespective of the source of isolation and all but four of these isolates were pathogenic on maize. The remaining 4 isolates recovered from asymptomatic leaves had large fluidal yellow colonies, and were non-pathogenic on maize. Isolates varied in their aggressiveness on a susceptible hybrid of maize but no significant differences in aggressiveness were detected between epiphytic isolates and those recovered from diseased maize tissues. The genomics of Cmn is poorly understood; therefore as a first step to determining what genes may play a role in virulence, we compared 33 putative virulence gene sequences from 6 pathogenic and a non-pathogenic isolate recovered from the phyllosphere. Sequence polymorphisms were detected in 5 genes, cellulase A, two endoglucanases, xylanase B and a pectate lyase but there was no relationship with pathogenicity. Further research is needed to determine what genes play a role in virulence of Cmn. Our data show however, that the virulence factors in Cmn likely differ from those reported for the closely related subspecies michiganensis and sepedonicus. PMID:26599211

  11. Systemic virus-induced gene silencing allows functional characterization of maize genes during biotrophic interaction with Ustilago maydis.

    PubMed

    van der Linde, Karina; Kastner, Christine; Kumlehn, Jochen; Kahmann, Regine; Doehlemann, Gunther

    2011-01-01

    Infection of maize (Zea mays) plants with the corn smut fungus Ustilago maydis leads to the formation of large tumors on the stem, leaves and inflorescences. In this biotrophic interaction, plant defense responses are actively suppressed by the pathogen, and previous transcriptome analyses of infected maize plants showed massive and stage-specific changes in host gene expression during disease progression. To identify maize genes that are functionally involved in the interaction with U. maydis, we adapted a virus-induced gene silencing (VIGS) system based on the brome mosaic virus (BMV) for maize. Conditions were established that allowed successful U. maydis infection of BMV-preinfected maize plants. This set-up enabled quantification of VIGS and its impact on U. maydis infection using a quantitative real-time PCR (qRT-PCR)-based readout. In proof-of-principle experiments, an U. maydis-induced terpene synthase was shown to negatively regulate disease development while a protein involved in cell death inhibition was required for full virulence of U. maydis. The results suggest that this system is a versatile tool for the rapid identification of maize genes that determine compatibility with U. maydis.

  12. Effects of salts on the gelatinization and retrogradation properties of maize starch and waxy maize starch.

    PubMed

    Wang, Wei; Zhou, Hongxian; Yang, Hong; Zhao, Siming; Liu, Youming; Liu, Ru

    2017-01-01

    The objective of this study was to evaluate the effects of salts on the gelatinization and retrogradation of maize and waxy maize starch. Experimental results showed that the salting-out or structure-making ions, such as F(-) and SO4(2-), decreased the swelling power, solubility and transparency of both starches, but increased the gelatinization temperature, enthalpy, and syneresis, due to the tendency of these ions to protect the hydrogen bond links among starch molecules. On the other hand, the salting-in or structure-breaking ions, such as I(-) and SCN(-), exhibited the opposite effects. Microscopic observations confirmed such effects of salts on both starches. Furthermore, the effects of salts were more significant on waxy maize and on normal maize starch. Generally, salts could significantly influence on the gelatinization and retrogradation of maize and waxy maize starch, following the order of the Hofmeister series. PMID:27507481

  13. Nutrient absorbtion of weeds in maize.

    PubMed

    Lehoczky, E; Kismányoky, A; Nagy, P; Németh, T

    2008-01-01

    Our study was carried out in Hungary at Keszthely, in 2007. The effect of different cultivation methods: no-till drill, disk tillage, conventional tillage (ploughing) and five increasing N doses were studied on the weediness. The bi-factorial trial was arranged in split plot design with four replications. Crop rotation: winter wheat-winter wheat-maize-maize. The seeding of maize was 23rd of April in 2007. The weed survey was made with Balázs-Ujvárosi coenological method on the 17th of May. In the experiment were found 21 weed species. We collected all plants of every weed species by plots. The sample area was 1 m2. Furthermore five maize plants per plot were sampled on the 22nd of May. Maize was at 3-4 leaves stage. For reason of competition studies no herbicides were applied on sampling sites. The aerial parts of weeds and maize plants were collected, and the fresh and dry matter weight was measured. We analyzed in detail, the occurrence of weed species, and the biomass production of weeds in comparison with maize. The effect of different cultivation methods markedly demonstrated the weed cover, the number of perennial and annual weeds and the number of occurring weed species.

  14. Reshaping of the maize transcriptome by domestication.

    PubMed

    Swanson-Wagner, Ruth; Briskine, Roman; Schaefer, Robert; Hufford, Matthew B; Ross-Ibarra, Jeffrey; Myers, Chad L; Tiffin, Peter; Springer, Nathan M

    2012-07-17

    Through domestication, humans have substantially altered the morphology of Zea mays ssp. parviglumis (teosinte) into the currently recognizable maize. This system serves as a model for studying adaptation, genome evolution, and the genetics and evolution of complex traits. To examine how domestication has reshaped the transcriptome of maize seedlings, we used expression profiling of 18,242 genes for 38 diverse maize genotypes and 24 teosinte genotypes. We detected evidence for more than 600 genes having significantly different expression levels in maize compared with teosinte. Moreover, more than 1,100 genes showed significantly altered coexpression profiles, reflective of substantial rewiring of the transcriptome since domestication. The genes with altered expression show a significant enrichment for genes previously identified through population genetic analyses as likely targets of selection during maize domestication and improvement; 46 genes previously identified as putative targets of selection also exhibit altered expression levels and coexpression relationships. We also identified 45 genes with altered, primarily higher, expression in inbred relative to outcrossed teosinte. These genes are enriched for functions related to biotic stress and may reflect responses to the effects of inbreeding. This study not only documents alterations in the maize transcriptome following domestication, identifying several genes that may have contributed to the evolution of maize, but highlights the complementary information that can be gained by combining gene expression with population genetic analyses.

  15. Inhibition of polyamine oxidase activity affects tumor development during the maize-Ustilago maydis interaction.

    PubMed

    Jasso-Robles, Francisco Ignacio; Jiménez-Bremont, Juan Francisco; Becerra-Flora, Alicia; Juárez-Montiel, Margarita; Gonzalez, María Elisa; Pieckenstain, Fernando Luis; García de la Cruz, Ramón Fernando; Rodríguez-Kessler, Margarita

    2016-05-01

    Ustilago maydis is a biotrophic plant pathogenic fungus that leads to tumor development in the aerial tissues of its host, Zea mays. These tumors are the result of cell hypertrophy and hyperplasia, and are accompanied by the reprograming of primary and secondary metabolism of infected plants. Up to now, little is known regarding key plant actors and their role in tumor development during the interaction with U. maydis. Polyamines are small aliphatic amines that regulate plant growth, development and stress responses. In a previous study, we found substantial increases of polyamine levels in tumors. In the present work, we describe the maize polyamine oxidase (PAO) gene family, its contribution to hydrogen peroxide (H2O2) production and its possible role in tumor development induced by U. maydis. Histochemical analysis revealed that chlorotic lesions and maize tumors induced by U. maydis accumulate H2O2 to significant levels. Maize plants inoculated with U. maydis and treated with the PAO inhibitor 1,8-diaminooctane exhibit a notable reduction of H2O2 accumulation in infected tissues and a significant drop in PAO activity. This treatment also reduced disease symptoms in infected plants. Finally, among six maize PAO genes only the ZmPAO1, which encodes an extracellular enzyme, is up-regulated in tumors. Our data suggest that H2O2 produced through PA catabolism by ZmPAO1 plays an important role in tumor development during the maize-U. maydis interaction.

  16. A multivariate regression model for detection of fumonisins content in maize from near infrared spectra.

    PubMed

    Giacomo, Della Riccia; Stefania, Del Zotto

    2013-12-15

    Fumonisins are mycotoxins produced by Fusarium species that commonly live in maize. Whereas fungi damage plants, fumonisins cause disease both to cattle breedings and human beings. Law limits set fumonisins tolerable daily intake with respect to several maize based feed and food. Chemical techniques assure the most reliable and accurate measurements, but they are expensive and time consuming. A method based on Near Infrared spectroscopy and multivariate statistical regression is described as a simpler, cheaper and faster alternative. We apply Partial Least Squares with full cross validation. Two models are described, having high correlation of calibration (0.995, 0.998) and of validation (0.908, 0.909), respectively. Description of observed phenomenon is accurate and overfitting is avoided. Screening of contaminated maize with respect to European legal limit of 4 mg kg(-1) should be assured.

  17. Production of highly concentrated, heat stable hepatitis B surface antigen in maize

    PubMed Central

    Hayden, Celine A.; Egelkrout, Erin M.; Moscoso, Alessa M.; Enrique, Cristina; Keener, Todd K.; Jimenez-Flores, Rafael; Wong, Jeffrey C.; Howard, John A.

    2012-01-01

    Summary Plant-based oral vaccines are a promising emergent technology that could help alleviate disease burden worldwide by providing a low-cost, heat stable, oral alternative to parenterally administered commercial vaccines. Here we describe high-level accumulation of the hepatitis B surface antigen (HBsAg) at a mean concentration of 0.51%TSP in maize T1 seeds using an improved version of the globulin1 promoter. This concentration is more than four-fold higher than any previously reported lines. HBsAg expressed in maize seeds was extremely heat stable, tolerating temperatures up to 55°C for one month without degradation. Optimal heat stability was achieved after oil extraction of ground maize material, either by supercritical fluid extraction or hexane treatment. The contributions of this material towards the development of a practical oral vaccine delivery system are discussed. PMID:22816734

  18. Photophobic behavior of maize roots.

    PubMed

    Burbach, Christian; Markus, Katharina; Zhang, Yin; Schlicht, Markus; Baluška, František

    2012-07-01

    Primary roots of young maize seedlings showed peculiar growth behavior when challenged by placing them on a slope, or if whole seedlings were turned upside down. Importantly, this behavior was dependent on the light conditions. If roots were placed on slopes in the dark, they performed "crawling" behavior and advanced rapidly up the slope. However, as soon as these roots were illuminated, their crawling movements along their horizontal paths slowed down, and instead tried to grow downwards along the gravity vector. A similar light-induced switch in the root behavior was observed when roots were inverted, by placing them in thin glass capillaries. As long as they were kept in the darkness, they showed rapid growth against the gravity vector. If illuminated, these inverted roots rapidly accomplished U-turns and grew down along the gravity vector, eventually escaping from the capillaries upon reaching their open ends. De-capped roots, although growing vigorously, did not display these light-induced photophobic growth responses. We can conclude that intact root cap is essential for the photophobic root behavior in maize.

  19. Photophobic behavior of maize roots

    PubMed Central

    Burbach, Christian; Markus, Katharina; Zhang, Yin; Schlicht, Markus; Baluška, František

    2012-01-01

    Primary roots of young maize seedlings showed peculiar growth behavior when challenged by placing them on a slope, or if whole seedlings were turned upside down. Importantly, this behavior was dependent on the light conditions. If roots were placed on slopes in the dark, they performed “crawling” behavior and advanced rapidly up the slope. However, as soon as these roots were illuminated, their crawling movements along their horizontal paths slowed down, and instead tried to grow downwards along the gravity vector. A similar light-induced switch in the root behavior was observed when roots were inverted, by placing them in thin glass capillaries. As long as they were kept in the darkness, they showed rapid growth against the gravity vector. If illuminated, these inverted roots rapidly accomplished U-turns and grew down along the gravity vector, eventually escaping from the capillaries upon reaching their open ends. De-capped roots, although growing vigorously, did not display these light-induced photophobic growth responses. We can conclude that intact root cap is essential for the photophobic root behavior in maize. PMID:22751294

  20. Photophobic behavior of maize roots.

    PubMed

    Burbach, Christian; Markus, Katharina; Zhang, Yin; Schlicht, Markus; Baluška, František

    2012-07-01

    Primary roots of young maize seedlings showed peculiar growth behavior when challenged by placing them on a slope, or if whole seedlings were turned upside down. Importantly, this behavior was dependent on the light conditions. If roots were placed on slopes in the dark, they performed "crawling" behavior and advanced rapidly up the slope. However, as soon as these roots were illuminated, their crawling movements along their horizontal paths slowed down, and instead tried to grow downwards along the gravity vector. A similar light-induced switch in the root behavior was observed when roots were inverted, by placing them in thin glass capillaries. As long as they were kept in the darkness, they showed rapid growth against the gravity vector. If illuminated, these inverted roots rapidly accomplished U-turns and grew down along the gravity vector, eventually escaping from the capillaries upon reaching their open ends. De-capped roots, although growing vigorously, did not display these light-induced photophobic growth responses. We can conclude that intact root cap is essential for the photophobic root behavior in maize. PMID:22751294

  1. MaizeGDB: The Maize Model Organism Database for Basic, Translational, and Applied Research

    PubMed Central

    Lawrence, Carolyn J.; Harper, Lisa C.; Schaeffer, Mary L.; Sen, Taner Z.; Seigfried, Trent E.; Campbell, Darwin A.

    2008-01-01

    In 2001 maize became the number one production crop in the world with the Food and Agriculture Organization of the United Nations reporting over 614 million tonnes produced. Its success is due to the high productivity per acre in tandem with a wide variety of commercial uses. Not only is maize an excellent source of food, feed, and fuel, but also its by-products are used in the production of various commercial products. Maize's unparalleled success in agriculture stems from basic research, the outcomes of which drive breeding and product development. In order for basic, translational, and applied researchers to benefit from others' investigations, newly generated data must be made freely and easily accessible. MaizeGDB is the maize research community's central repository for genetics and genomics information. The overall goals of MaizeGDB are to facilitate access to the outcomes of maize research by integrating new maize data into the database and to support the maize research community by coordinating group activities. PMID:18769488

  2. [Effects of intercropping different crops with maize on the Cd uptake by maize].

    PubMed

    Li, Ning-Yu; Li, Zhi-An; Ding, Yong-Zhen; Zou, Bi; Zhuang, Ping

    2008-06-01

    A greenhouse experiment was conducted to investigate the effects of intercropping 7 kinds of crops on the Cd uptake by maize (Zea mays L.). The results showed that most intercrops had no significant effects on the growth of maize, only with purple haricot reduced the maize biomass by 32.2% of the control. Legume crops enhanced the total quantity of Cd in maize in a great magnitude, and chickpea worked most efficiently, which doubled the Cd quantity in maize. The 7 intercrops showed different capability of Cd uptake, among which, rape and amaranth absorbed larger amount of Cd, with a Cd level of 53.9 mg x kg(-1) and 51.0 mg x kg(-1) in their aboveground parts, respectively, and of 91.8 mg x kg(-1) in amaranth root when the soil Cd content was 3 mg x kg(-1) soil. There was an interaction between maize and intercrops in Cd uptake. Legumes absorbed smaller amount of Cd but significantly increased the Cd uptake by maize, while amaranth was in adverse. Rape had a higher level of Cd concentration in its shoot, but reduced the Cd in aboveground part of maize. It was indicated that if maize was used for phytoremediation of Cd-contaminated soil, a higher efficiency of Cd removal could be achieved by intercropping it with legumes. Rape and amaranth could be the two promising plants for phytoremediation because of their high Cd accumulation. PMID:18808034

  3. Plant growth hormones suppress the development of Harpophora maydis, the cause of late wilt in maize.

    PubMed

    Degani, Ofir; Drori, Ran; Goldblat, Yuval

    2015-01-01

    Late wilt, a severe vascular disease of maize caused by the fungus Harpophora maydis, is characterized by rapid wilting of maize plants before tasseling and until shortly before maturity. The pathogen is currently controlled by resistant maize cultivars, but the disease is constantly spreading to new areas. The plant's late phenological stage at which the disease appears suggests that plant hormones may be involved in the pathogenesis. This work revealed that plant growth hormones, auxin (Indole-3-acetic acid) and cytokinin (kinetin), suppress H. maydis in culture media and in a detached root assay. Kinetin, and even more auxin, caused significant suppression of fungus spore germination. Gibberellic acid did not alter colony growth rate but had a signal suppressive effect on the pathogens' spore germination. In comparison, ethylene and jasmonic acid, plant senescing and defense response regulators, had minor effects on colony growth and spore germination rate. Their associate hormone, salicylic acid, had a moderate suppressive effect on spore germination and colony growth rate, and a strong influence when combined with auxin. Despite the anti-fungal auxin success in vitro, field experiments with dimethylamine salt of  2,4-dichlorophenoxyacetic acid (that mimics the influence of auxin) failed to suppress the late wilt. The lines of evidence presented here reveal the suppressive influence of the three growth hormones studied on fungal development and are important to encourage further and more in-depth examinations of this intriguing hormonal complex regulatory and its role in the maize-H. maydis interactions. PMID:25649030

  4. Plant growth hormones suppress the development of Harpophora maydis, the cause of late wilt in maize.

    PubMed

    Degani, Ofir; Drori, Ran; Goldblat, Yuval

    2015-01-01

    Late wilt, a severe vascular disease of maize caused by the fungus Harpophora maydis, is characterized by rapid wilting of maize plants before tasseling and until shortly before maturity. The pathogen is currently controlled by resistant maize cultivars, but the disease is constantly spreading to new areas. The plant's late phenological stage at which the disease appears suggests that plant hormones may be involved in the pathogenesis. This work revealed that plant growth hormones, auxin (Indole-3-acetic acid) and cytokinin (kinetin), suppress H. maydis in culture media and in a detached root assay. Kinetin, and even more auxin, caused significant suppression of fungus spore germination. Gibberellic acid did not alter colony growth rate but had a signal suppressive effect on the pathogens' spore germination. In comparison, ethylene and jasmonic acid, plant senescing and defense response regulators, had minor effects on colony growth and spore germination rate. Their associate hormone, salicylic acid, had a moderate suppressive effect on spore germination and colony growth rate, and a strong influence when combined with auxin. Despite the anti-fungal auxin success in vitro, field experiments with dimethylamine salt of  2,4-dichlorophenoxyacetic acid (that mimics the influence of auxin) failed to suppress the late wilt. The lines of evidence presented here reveal the suppressive influence of the three growth hormones studied on fungal development and are important to encourage further and more in-depth examinations of this intriguing hormonal complex regulatory and its role in the maize-H. maydis interactions.

  5. Acute stroke after intravitreal bevacizumab to treat choroidal neovascularization due to angioid streaks in pseudoxanthoma elasticum : a severe systemic adverse event after an off-label procedure.

    PubMed

    Besozzi, Gianluca; Ferrara, Andrea; Epifani, Enrico; Intini, Daniela; Apruzzese, Margherita; Provenzano, Antonio; Vetrugno, Michele

    2013-04-01

    To report the occurrence of acute stroke after intravitreal bevacizumab administration to treat choroidal neovascularization due to angioid streaks in a patient affected by pseudoxanthoma elasticum. A 54-year-old man with pseudoxanthoma elasticum had vision loss because of choroidal neovascularization due to angioid streaks. He underwent two intravitreal bevacizumab injections. Three days after the second procedure the patient was afflicted by acute stroke. Intravitreal injection of bevacizumab to treat choroidal neovascularization due to angioid streaks in pseudoxanthoma elasticum could lead to severe systemic adverse events. PMID:23065017

  6. Choosing a Genome Browser for a Model Organism Database (MOD): Surveying the Maize Community

    Technology Transfer Automated Retrieval System (TEKTRAN)

    As the maize genome sequencing is nearing its completion, the Maize Genetics and Genomics Database (MaizeGDB), the Model Organism Database for maize, integrated a genome browser to its already existing Web interface and database. The addition of the MaizeGDB Genome Browser to MaizeGDB will allow it ...

  7. Evaluation of maize yield in an on-farm maize-soybean and maize-Lablab crop rotation systems in the Northern Guinea Savanna of Nigeria.

    PubMed

    Okogun, J A; Sanginga, N; Abaidoo, R C

    2007-11-01

    An attempt was made to solving the problem of shortfall of fertilizer to maize production in the Northern Guinea Savanna (NGS) of Nigeria by harnessing the potentials of legume/cereal crop rotation in on-farm trials. The yield of maize that succeeded two soybean varieties and Lablab in a two-cycle of soybean/maize and Lablab/maize crop rotation in NGS Nigeria was assessed in researcher-managed and farmer-managed plots. Though maize that followed the soybean received between 5 kg N ha(-1) from improved soybean variety (TGx 1448-2E) and 17 kg N ha(-1) from farmer soybean variety (Samsoy-2) as N balance, this did not significantly (p = 0.05) affect the maize yields. The soybean shed 90-100% of its leaves at physiological maturity which resulted in about 110 kg N ha(-1) N uptake. This source of N might be one of the factors responsible for the increase in maize yield that followed soybean (20 to 24%) compared with continuous maize yield plot. Maize yield in previous Lablab plot was significantly (p = 0.05) higher than in all other treatments. Maize yield in farmer-managed plot ranged between 0.13 and 4.53 t ha(-1), maize yield in researcher-managed plot was over 200% higher than maize yield in farmer-managed plot because of poor crop management on the part of the farmer.

  8. Open chromatin reveals the functional maize genome

    PubMed Central

    Rodgers-Melnick, Eli; Vera, Daniel L.; Bass, Hank W.

    2016-01-01

    Cellular processes mediated through nuclear DNA must contend with chromatin. Chromatin structural assays can efficiently integrate information across diverse regulatory elements, revealing the functional noncoding genome. In this study, we use a differential nuclease sensitivity assay based on micrococcal nuclease (MNase) digestion to discover open chromatin regions in the maize genome. We find that maize MNase-hypersensitive (MNase HS) regions localize around active genes and within recombination hotspots, focusing biased gene conversion at their flanks. Although MNase HS regions map to less than 1% of the genome, they consistently explain a remarkably large amount (∼40%) of heritable phenotypic variance in diverse complex traits. MNase HS regions are therefore on par with coding sequences as annotations that demarcate the functional parts of the maize genome. These results imply that less than 3% of the maize genome (coding and MNase HS regions) may give rise to the overwhelming majority of phenotypic variation, greatly narrowing the scope of the functional genome. PMID:27185945

  9. [Effects of nitrogen management on maize nitrogen utilization and residual nitrate nitrogen in soil under maize/soybean and maize/sweet potato relay strip intercropping systems].

    PubMed

    Wang, Xiao-Chun; Yang, Wen-Yu; Deng, Xiao-Yan; Zhang, Qun; Yong, Tai-Wen; Liu, Wei-Guo; Yang, Feng; Mao, Shu-Ming

    2014-10-01

    A large amount of nitrogen (N) fertilizers poured into the fields severely pollute the environment. Reasonable application of N fertilizer has always been the research hotpot. The effects of N management on maize N utilization and residual nitrate N in soil under maize/soybean and maize/ sweet potato relay strip intercropping systems were reported in a field experiment in southwest China. It was found that maize N accumulation, N harvest index, N absorption efficiency, N contribution proportion after the anthesis stage in maize/soybean relay strip intercropping were increased by 6.1%, 5.4%, 4.3%, and 15.1% than under maize/sweet potato with an increase of 22.6% for maize yield after sustainable growing of maize/soybean intercropping system. Nitrate N accumulation in the 0-60 cm soil layer was 12.9% higher under maize/soybean intercropping than under maize/sweet potato intercropping. However, nitrate N concentration in the 60-120 cm soil layer when intercropped with soybean decreased by 10.3% than when intercropped with sweet potato, indicating a decrease of N leaching loss. Increasing of N application rate enhanced N accumulation of maize and decreased N use efficiency and significantly increased nitrate concentration in the soil profile except in the 60-100 cm soil layer, where no significant difference was observed with nitrogen application rate at 0 to 270 kg · hm(-2). Further application of N fertilizer significantly enhanced nitrate leaching loss. Postponing N application increased nitrate accumulation in the 60-100 cm soil layer. The results suggested that N application rates and ratio of base to top dressing had different influences on maize N concentration and nitrate N between maize/soybean and maize/sweet potato intercropping. Maize N concentration in the late growing stage, N harvest index and N use efficiency under maize/soybean intercropping increased (with N application rate at 180-270 kg · hm(-2) and ratio of base to top dressing = 3:2:5) and

  10. Can transgenic maize affect soil microbial communities?

    PubMed

    Mulder, Christian; Wouterse, Marja; Raubuch, Markus; Roelofs, Willem; Rutgers, Michiel

    2006-09-29

    The aim of the experiment was to determine if temporal variations of belowground activity reflect the influence of the Cry1Ab protein from transgenic maize on soil bacteria and, hence, on a regulatory change of the microbial community (ability to metabolize sources belonging to different chemical guilds) and/or a change in numerical abundance of their cells. Litter placement is known for its strong influence on the soil decomposer communities. The effects of the addition of crop residues on respiration and catabolic activities of the bacterial community were examined in microcosm experiments. Four cultivars of Zea mays L. of two different isolines (each one including the conventional crop and its Bacillus thuringiensis cultivar) and one control of bulk soil were included in the experimental design. The growth models suggest a dichotomy between soils amended with either conventional or transgenic maize residues. The Cry1Ab protein appeared to influence the composition of the microbial community. The highly enhanced soil respiration observed during the first 72 h after the addition of Bt-maize residues can be interpreted as being related to the presence of the transgenic crop residues. This result was confirmed by agar plate counting, as the averages of the colony-forming units of soils in conventional treatments were about one-third of those treated with transgenic straw. Furthermore, the addition of Bt-maize appeared to induce increased microbial consumption of carbohydrates in BIOLOG EcoPlates. Three weeks after the addition of maize residues to the soils, no differences between the consumption rate of specific chemical guilds by bacteria in soils amended with transgenic maize and bacteria in soils amended with conventional maize were detectable. Reaped crop residues, comparable to post-harvest maize straw (a common practice in current agriculture), rapidly influence the soil bacterial cells at a functional level. Overall, these data support the existence of short

  11. HC-Pro protein of sugar cane mosaic virus interacts specifically with maize ferredoxin-5 in vitro and in planta.

    PubMed

    Cheng, Yu-Qin; Liu, Zhong-Mei; Xu, Jian; Zhou, Tao; Wang, Meng; Chen, Yu-Ting; Li, Huai-Fang; Fan, Zai-Feng

    2008-08-01

    Symptom development of a plant viral disease is a result of molecular interactions between the virus and its host plant; thus, the elucidation of specific interactions is a prerequisite to reveal the mechanism of viral pathogenesis. Here, we show that the chloroplast precursor of ferredoxin-5 (Fd V) from maize (Zea mays) interacts with the multifunctional HC-Pro protein of sugar cane mosaic virus (SCMV) in yeast, Nicotiana benthamiana cells and maize protoplasts. Our results demonstrate that the transit peptide rather than the mature protein of Fd V precursor could interact with both N-terminal (residues 1-100) and C-terminal (residues 301-460) fragments, but not the middle part (residues 101-300), of HC-Pro. In addition, SCMV HC-Pro interacted only with Fd V, and not with the other two photosynthetic ferredoxin isoproteins (Fd I and Fd II) from maize plants. SCMV infection significantly downregulated the level of Fd V mRNA in maize plants; however, no obvious changes were observed in levels of Fd I and Fd II mRNA. These results suggest that SCMV HC-Pro interacts specifically with maize Fd V and that this interaction may disturb the post-translational import of Fd V into maize bundle-sheath cell chloroplasts, which could lead to the perturbation of chloroplast structure and function.

  12. Dust Devils Seen Streaking Across Mars: PART II--They're the Work of the Devil!

    NASA Technical Reports Server (NTRS)

    2000-01-01

    [figure removed for brevity, see original site]

    [figure removed for brevity, see original site]

    In December 1999, the MOC team finally had an answer! A dust devil, shown in the above left figure, was caught in the act of creating a swirly, dark streak! An eerie sensation washed over the first team members who saw this picture--here was an event on Mars 'caught in the act' just hours before the picture was played back to Earth. A 'smoking gun.'

    The first dust devil seen making a streak--located in Promethei Terra (above, left)--was traveling from right (east) to left (west). A columnar shadow was cast by sunlight coming from the upper left. This shadow indicates the true shape of the dust devil. The bright dust devil itself does not look like a column because the picture was taken from a camera looking straight down on it. The dust devil is less than 100 meters (less than 100 yards) wide and the picture covers an area approximately 1.5 by 1.7 kilometers (about 1 by 1 mile).

    Dust devils are spinning, columnar vortices of wind that move across the landscape, pick up dust, and look somewhat like miniature tornadoes. Dust devils are a common occurrence in dry and desert landscapes on Earth as well as Mars. They form when the ground heats up during the day, warming the air immediately above the surface. As the warmed air nearest the surface begins to rise, it spins. The spinning column begins to move across the surface and picks up loose dust (if any is present). The dust makes the vortex visible and gives it the 'dust devil' or tornado-like appearance. On Earth, dust devils typically last for only a few minutes.

    The fourth picture (above, right) shows a surface in southwestern Terra Sirenum near 63oS, 168oW, that has seen the activity of so many dust devils that it looks like a plate of dark gray spaghetti. This image, taken in early summer during February 2000, covers an area 3 km wide and 30 km long (1.9 by 19 miles). In fact, a dust devil

  13. Climate Change and Maize Yield in Iowa

    PubMed Central

    Xu, Hong; Twine, Tracy E.; Girvetz, Evan

    2016-01-01

    Climate is changing across the world, including the major maize-growing state of Iowa in the USA. To maintain crop yields, farmers will need a suite of adaptation strategies, and choice of strategy will depend on how the local to regional climate is expected to change. Here we predict how maize yield might change through the 21st century as compared with late 20th century yields across Iowa, USA, a region representing ideal climate and soils for maize production that contributes substantially to the global maize economy. To account for climate model uncertainty, we drive a dynamic ecosystem model with output from six climate models and two future climate forcing scenarios. Despite a wide range in the predicted amount of warming and change to summer precipitation, all simulations predict a decrease in maize yields from late 20th century to middle and late 21st century ranging from 15% to 50%. Linear regression of all models predicts a 6% state-averaged yield decrease for every 1°C increase in warm season average air temperature. When the influence of moisture stress on crop growth is removed from the model, yield decreases either remain the same or are reduced, depending on predicted changes in warm season precipitation. Our results suggest that even if maize were to receive all the water it needed, under the strongest climate forcing scenario yields will decline by 10–20% by the end of the 21st century. PMID:27219116

  14. Climate change and maize yield in Iowa

    DOE PAGES

    Xu, Hong; Twine, Tracy E.; Girvetz, Evan

    2016-05-24

    Climate is changing across the world, including the major maize-growing state of Iowa in the USA. To maintain crop yields, farmers will need a suite of adaptation strategies, and choice of strategy will depend on how the local to regional climate is expected to change. Here we predict how maize yield might change through the 21st century as compared with late 20th century yields across Iowa, USA, a region representing ideal climate and soils for maize production that contributes substantially to the global maize economy. To account for climate model uncertainty, we drive a dynamic ecosystem model with output frommore » six climate models and two future climate forcing scenarios. Despite a wide range in the predicted amount of warming and change to summer precipitation, all simulations predict a decrease in maize yields from late 20th century to middle and late 21st century ranging from 15% to 50%. Linear regression of all models predicts a 6% state-averaged yield decrease for every 1°C increase in warm season average air temperature. When the influence of moisture stress on crop growth is removed from the model, yield decreases either remain the same or are reduced, depending on predicted changes in warm season precipitation. Lastly, our results suggest that even if maize were to receive all the water it needed, under the strongest climate forcing scenario yields will decline by 10-20% by the end of the 21st century.« less

  15. Climate Change and Maize Yield in Iowa.

    PubMed

    Xu, Hong; Twine, Tracy E; Girvetz, Evan

    2016-01-01

    Climate is changing across the world, including the major maize-growing state of Iowa in the USA. To maintain crop yields, farmers will need a suite of adaptation strategies, and choice of strategy will depend on how the local to regional climate is expected to change. Here we predict how maize yield might change through the 21st century as compared with late 20th century yields across Iowa, USA, a region representing ideal climate and soils for maize production that contributes substantially to the global maize economy. To account for climate model uncertainty, we drive a dynamic ecosystem model with output from six climate models and two future climate forcing scenarios. Despite a wide range in the predicted amount of warming and change to summer precipitation, all simulations predict a decrease in maize yields from late 20th century to middle and late 21st century ranging from 15% to 50%. Linear regression of all models predicts a 6% state-averaged yield decrease for every 1°C increase in warm season average air temperature. When the influence of moisture stress on crop growth is removed from the model, yield decreases either remain the same or are reduced, depending on predicted changes in warm season precipitation. Our results suggest that even if maize were to receive all the water it needed, under the strongest climate forcing scenario yields will decline by 10-20% by the end of the 21st century.

  16. The President's Day cyclone 17-19 February 1979: An analysis of jet streak interactions prior to cyclogenesis

    NASA Technical Reports Server (NTRS)

    Uccellini, L. W.; Kocin, P. J.; Walsh, C. H.

    1981-01-01

    The President's Day cyclone, produced record breaking snowfall along the East Coast of the United States in February 1979. Conventional radiosonde data, SMS GOES infrared imagery and LFM 2 model diagnostics were used to analyze the interaction of upper and lower tropospheric jet streaks prior to cyclogenesis. The analysis reveals that a series of complex scale interactive processes is responsible for the development of the intense cyclone. The evolution of the subsynoptic scale mass and momentum fields prior to and during the period of rapid development of the President's Day cyclone utilizing conventional data and SMS GOES imagery is documented. The interaction between upper and lower tropospheric jet streaks which occurred prior to the onset of cyclogenesis is discussed as well as the possible effects of terrain modified airflow within the precyclogenesis environment. Possible deficiencies in the LFM-2 initial wind fields that could have been responsible, in part, for the poor numerical forecast are examined.

  17. MaizeGDB update: New tools, data, and interface for the maize model organism database

    Technology Transfer Automated Retrieval System (TEKTRAN)

    MaizeGDB is a highly curated, community-oriented database and informatics service to researchers focused on the crop plant and model organism Zea mays ssp. mays. Although some form of the maize community database has existed over the last 25 years, there have only been two major releases. In 1991, ...

  18. Network analysis of maize RNA transport pathway genes associated with maize resistance to aflatoxin accumulation

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Aspergillus flavus is a pathogenic fungus producing alfatoxins that cause significant economic losses in maize production. This study analyzes the differences in expression levels of maize genes in response to A. flavus infection and aflatoxin accumulation. Identification of defense related genes an...

  19. Expression of an anthranilate synthase from maize mutant bf-1 in maize line HiII

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Maize mutant bf-1 was one of a series of maize mutants generated by radiation from the Bikini Atoll atomic bomb test in 1946. It is characterized by blue fluorescence in seedlings and anthers under ultraviolet illumination and by mutant plants giving off a characteristic grape-like odor due to the ...

  20. Expanding maize genetic resources with predomestication alleles: maize-teosinte introgression populations

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Teosinte (Zea mays ssp. parviglumis) has greater genetic diversity than maize inbreds and landraces (Z. mays ssp. mays). There are, however, limited genetic resources to efficiently evaluate and tap this diversity. To broaden resources for genetic diversity studies in maize, we developed and evaluat...

  1. Distributed Blowing and Suction for the Purpose of Streak Control in a Boundary Layer Subjected to a Favorable Pressure Gradient

    NASA Technical Reports Server (NTRS)

    Forgoston, Eric; Tumin, Anatoli; Ashpis, David E.

    2005-01-01

    An analysis of the optimal control by blowing and suction in order to generate stream- wise velocity streaks is presented. The problem is examined using an iterative process that employs the Parabolized Stability Equations for an incompressible uid along with its adjoint equations. In particular, distributions of blowing and suction are computed for both the normal and tangential velocity perturbations for various choices of parameters.

  2. Concentration and dissipation of chlorantraniliprole and thiamethoxam residues in maize straw, maize, and soil.

    PubMed

    He, Min; Song, Dan; Jia, Hong C; Zheng, Yongquan

    2016-09-01

    To study the dissipation rates and final residual levels of chlorantraniliprole and thiamethoxam in maize straw, maize, and soil, two independent field trials were conducted during the 2014 cropping season in Beijing and Anhui Provinces of China. A 40% wettable powder (20% chlorantraniliprole + 20% thiamethoxam) was sprayed onto maize straw and soil at an application rate of 118 g of active ingredient per hectare (g a.i.ha(-1)). The residual concentrations were determined by ultra-high-performance liquid chromatography-tandem mass spectrometry. The chlorantraniliprole half-lives in maize straw and soil were 9.0-10.8 and 9.5-21.7 days, respectively. The thiamethoxam half-lives in maize straw and soil were 8.4-9.8 and 4.3-11.7 days, respectively. The final residues of chlorantraniliprole and thiamethoxam in maize straw, maize, and soil were measured after the pesticides had been sprayed two and three times with an interval of 7 days using 1 and 1.5 times the recommended rate (72 g a.i. ha(-1) and 108 g a.i. ha(-1), respectively). Representative maize straw, maize, and soil samples were collected after the last treatment at pre-harvest intervals of 7, 14, and 28 days. The chlorantraniliprole residue was below 0.01 mg kg(-1) in maize, between 0.01 and 0.31 mg kg(-1) in maize straw, and between 0.03 and 1.91 mg kg(-1) in soil. The thiamethoxam residue concentrations in maize, maize straw, and soil were <0.01, <0.01, and 0.01-0.03 mg kg(-1), respectively. The final pesticide residues on maize were lower than the maximum residue limit (MRL) of 0.02 mg kg(-1) after a 14-day pre-harvest interval. Therefore, a dosage of 72 g a.i. ha(-1) was recommended, as it can be considered safe to human beings and animals. PMID:27192406

  3. No Adjuvant Effect of Bacillus thuringiensis-Maize on Allergic Responses in Mice

    PubMed Central

    Dekan, Gerhard; Epstein, Michelle M.

    2014-01-01

    Genetically modified (GM) foods are evaluated carefully for their ability to induce allergic disease. However, few studies have tested the capacity of a GM food to act as an adjuvant, i.e. influencing allergic responses to other unrelated allergens at acute onset and in individuals with pre-existing allergy. We sought to evaluate the effect of short-term feeding of GM Bacillus thuringiensis (Bt)-maize (MON810) on the initiation and relapse of allergic asthma in mice. BALB/c mice were provided a diet containing 33% GM or non-GM maize for up to 34 days either before ovalbumin (OVA)-induced experimental allergic asthma or disease relapse in mice with pre-existing allergy. We observed that GM-maize feeding did not affect OVA-induced eosinophilic airway and lung inflammation, mucus hypersecretion or OVA-specific antibody production at initiation or relapse of allergic asthma. There was no adjuvant effect upon GM-maize consumption on the onset or severity of allergic responses in a mouse model of allergic asthma. PMID:25084284

  4. Genetic structure of populations of sugarcane streak mosaic virus in China: Comparison with the populations in India.

    PubMed

    He, Zhen; Yasaka, Ryosuke; Li, Wenfeng; Li, Shifang; Ohshima, Kazusato

    2016-01-01

    Sugarcane streak mosaic virus (SCSMV) causes mosaic and streak symptoms on sugarcane and sorghum crops, and has a broad host range. SCSMV is a member of the genus Poacevirus in the family Potyviridae.Ten SCSMV isolates were collected from sugarcane plants showing mosaic and streaking in Southern China from 2009-2011. Sequence-based phylogenetic and population genetic analyses were conducted using four partial genomic sequences covering the full genomes. These analyses were used to estimate the subpopulation differentiation and divergence within the Chinese virus population, and were compared with isolates from India. SCSMV-infected sugarcane plants in the field commonly harbor virus quasispecies (mutant cloud), and often have mixed infections with the same virus isolates. Inter- and intra-lineage recombination sites were identified in the protein 1, helper-component proteinase, coat protein and 3' non-coding regions of the Chinese isolates. All the Chinese non-recombinant isolates fell into at least nine lineages, and many clustered with Indian isolates. However, estimates of genetic differentiation and gene flow indicated that the SCSMV populations in China and India are genetically independent. Our genetic study of a poacevirus population in South Asia regions indicates the importance of the evolutionary-based design to control viruses.

  5. Inferring the time resolved core electron temperature from x-ray emission measured by a streak camera

    NASA Astrophysics Data System (ADS)

    Khan, Shahab; Patel, Pravesh; Izumi, Nobuhiko; Macphee, Andrew G.; Ma, Tammy; Cerjan, Charlie; Bradley, David K.

    2015-11-01

    The electron temperature (Te) of the hot spot within the core of imploded inertial confinement fusion capsules is an effective indicator of implosion performance. A temporally resolved measurement of Te helps elucidate the mechanisms for hot spot heating and cooling such as alpha-heating and mix. Additionally, comparison with simulations will aid in tuning models to effectively predict implosion performance. The Streaked Polar Instrumentation for Diagnosing Energetic Radiation (SPIDER) is an x-ray streak camera designed to record the x-ray burn history during the stagnation phase. SPIDER accurately reports bang time and burn duration of implosions on the National Ignition Facility (NIF). The addition of several filters of specific materials and thicknesses spread across the spatial axis of the streak camera imager allows for a least square fit of the signal through these filters to a bremsstrahlung hot spot model. The fitted parameters of the model are the Te, opacity, and X-ray yield which is valuable for ablator mix estimates. The details of this calculation and results from several shots on NIF are presented.

  6. Intestinal microbiota and secretory immunoglobulin A in feces of exclusively breast-fed infants with blood-streaked stools.

    PubMed

    Kumagai, Hideki; Maisawa, Shun-ichi; Tanaka, Mamoru; Takahashi, Motomichi; Takasago, Yuhei; Nishijima, Asaka; Watanabe, Shuhka

    2012-10-01

    Episodes of blood-streaked stools are not uncommon in exclusively breast-fed infants under 6 months of age. Such bleeding is thought to be associated with food protein-induced proctocolitis, however the pathomechanism remains unclear. The aim of this study was to investigate intestinal microbiota and secretory immunoglobulin A in the feces of exclusively breast-fed infants with blood-streaked stools. Fecal specimens from 15 full-term infants with blood-streaked stools and 15 breast-fed healthy infants were studied and the results compared. All infants had been delivered vaginally and exclusively breast-fed. The fecal microbiota were investigated by phylogenetic analysis combined with culture methods for some bacterial species, and feces were assessed for the presence of fecal secretory immunoglobulin A by enzyme-linked immunosorbent assay. Phylogenetic cluster analysis revealed four major clusters of fecal bacteria, cluster A being found only in healthy infants. The Bacteroides fragilis group was observed more frequently in controls than in patients (P < 0.05). In the controls, the predominant species belonging to the Enterobacteriaceae group was Escherichia coli, whereas in the patients it was Klebsiella (P < 0.05). Concentrations of secretory immunoglobulin A were high in one third of the healthy controls. In conclusion, the pathomechanism of rectal bleeding in exclusively breast-fed infants may be related to differences in the composition of their intestinal flora.

  7. A Robust In-Situ Warp-Correction Algorithm For VISAR Streak Camera Data at the National Ignition Facility

    SciTech Connect

    Labaria, George R.; Warrick, Abbie L.; Celliers, Peter M.; Kalantar, Daniel H.

    2015-01-12

    The National Ignition Facility (NIF) at the Lawrence Livermore National Laboratory is a 192-beam pulsed laser system for high-energy-density physics experiments. Sophisticated diagnostics have been designed around key performance metrics to achieve ignition. The Velocity Interferometer System for Any Reflector (VISAR) is the primary diagnostic for measuring the timing of shocks induced into an ignition capsule. The VISAR system utilizes three streak cameras; these streak cameras are inherently nonlinear and require warp corrections to remove these nonlinear effects. A detailed calibration procedure has been developed with National Security Technologies (NSTec) and applied to the camera correction analysis in production. However, the camera nonlinearities drift over time, affecting the performance of this method. An in-situ fiber array is used to inject a comb of pulses to generate a calibration correction in order to meet the timing accuracy requirements of VISAR. We develop a robust algorithm for the analysis of the comb calibration images to generate the warp correction that is then applied to the data images. Our algorithm utilizes the method of thin-plate splines (TPS) to model the complex nonlinear distortions in the streak camera data. In this paper, we focus on the theory and implementation of the TPS warp-correction algorithm for the use in a production environment.

  8. Streak instability and generation of hairpin-vortices by a slotted jet in channel crossflow: Experiments and linear stability analysis

    NASA Astrophysics Data System (ADS)

    Philip, Jimmy; Karp, Michael; Cohen, Jacob

    2016-01-01

    Streaks and hairpin-vortices are experimentally generated in a laminar plane Poiseuille crossflow by injecting a continuous jet through a streamwise slot normal to the crossflow, with air as the working media. Small disturbances form stable streaks, however, higher disturbances cause the formation of streaks which undergo instability leading to the generation of hairpin vortices. Particular emphasis is placed on the flow conditions close to the generation of hairpin-vortices. Measurements are carried out in the cases of natural and phase-locked disturbance employing smoke visualisation, particle image velocimetry, and hot-wire anemometry, which include, the dominant frequency, wavelength, and the disturbance shape (or eigenfunctions) associated with the coherent part of the velocity field. A linear stability analysis for both one- and two-dimensional base-flows is carried out to understand the mechanism of instability and good agreement of wavelength and eigenfunctions are obtained when compared to the experimental data, and a slight under-prediction of the growth-rates by the linear stability analysis consistent with the final nonlinear stages in transitional flows. Furthermore, an energy analysis for both the temporal and spatial stability analysis revels the dominance of the symmetric varicose mode, again, in agreement with the experiments, which is found to be governed by the balance of the wallnormal shear and dissipative effects rather than the spanwise shear. In all cases the anti-symmetric sinuous modes governed by the spanwise shear are found to be damped both in analysis and in our experiments.

  9. Note: A technique to capture and compose streak images of explosive events with unpredictable timing.

    PubMed

    Parker, Gary R; Asay, Blaine W; Dickson, Peter M

    2010-01-01

    The authors describe a method to capture optical data and construct digitized streak images for analysis of high-speed phenomena with unpredictable timing by using a high-speed video camera and software routines. Advances in high-speed video camera technology have led to development of cameras with frame rates (1 x 10(6) frames per second) and spatial resolution (1280 x 800 pixels) suitable to capture fast phenomena, such as detonation in high explosives (< or = 10 km s(-1)), on small enough scales to be convenient for laboratory experiments. Further, relatively long-duration recordings (> or = 1 s) are maintained in a rolling buffer in volatile memory allowing the entire frame sequence to be recorded pretrigger, thus obviating the need for precisely located diagnostic triggers. The method described was used to capture the progression of luminous reaction during the deflagration-to-detonation transition of the HMX-based (octahydro-1, 3, 5, 7-tetranitro-1, 3, 5, 7-tetrazocine) plastic bonded explosive (PBX) formulation during cookoff. PMID:20113140

  10. Attosecond streaking measurement of extreme ultraviolet pulses using a long-wavelength electric field

    PubMed Central

    Saito, Nariyuki; Ishii, Nobuhisa; Kanai, Teruto; Watanabe, Shuntaro; Itatani, Jiro

    2016-01-01

    Long-wavelength lasers have great potential to become a new-generation drive laser for tabletop coherent light sources in the soft X-ray region. Because of the significantly low conversion efficiency from a long-wavelength light field to high-order harmonics, their pulse characterization has been carried out by measuring the carrier-envelope phase and/or spatial dependences of high harmonic spectra. However, these photon detection schemes, in general, have difficulty in obtaining information on the spectral phases, which is crucial to determine the temporal structures of high-order harmonics. Here, we report the first attosecond streaking measurement of high harmonics generated by few-cycle optical pulses at 1.7 μm from a BiB3O6–based optical parametric chirped-pulse amplifier. This is also the first demonstration of time-resolved photoelectron spectroscopy using high harmonics from a long-wavelength drive laser other than Ti:sapphire lasers, which paves the way towards ultrafast soft X-ray photoelectron spectroscopy. PMID:27752115

  11. Note: A technique to capture and compose streak images of explosive events with unpredictable timing.

    PubMed

    Parker, Gary R; Asay, Blaine W; Dickson, Peter M

    2010-01-01

    The authors describe a method to capture optical data and construct digitized streak images for analysis of high-speed phenomena with unpredictable timing by using a high-speed video camera and software routines. Advances in high-speed video camera technology have led to development of cameras with frame rates (1 x 10(6) frames per second) and spatial resolution (1280 x 800 pixels) suitable to capture fast phenomena, such as detonation in high explosives (< or = 10 km s(-1)), on small enough scales to be convenient for laboratory experiments. Further, relatively long-duration recordings (> or = 1 s) are maintained in a rolling buffer in volatile memory allowing the entire frame sequence to be recorded pretrigger, thus obviating the need for precisely located diagnostic triggers. The method described was used to capture the progression of luminous reaction during the deflagration-to-detonation transition of the HMX-based (octahydro-1, 3, 5, 7-tetranitro-1, 3, 5, 7-tetrazocine) plastic bonded explosive (PBX) formulation during cookoff.

  12. Note: A technique to capture and compose streak images of explosive events with unpredictable timing

    NASA Astrophysics Data System (ADS)

    Parker, Gary R.; Asay, Blaine W.; Dickson, Peter M.

    2010-01-01

    The authors describe a method to capture optical data and construct digitized streak images for analysis of high-speed phenomena with unpredictable timing by using a high-speed video camera and software routines. Advances in high-speed video camera technology have led to development of cameras with frame rates (1×106 frames per second) and spatial resolution (1280×800 pixels) suitable to capture fast phenomena, such as detonation in high explosives (≤10 km s-1), on small enough scales to be convenient for laboratory experiments. Further, relatively long-duration recordings (≥1 s) are maintained in a rolling buffer in volatile memory allowing the entire frame sequence to be recorded pretrigger, thus obviating the need for precisely located diagnostic triggers. The method described was used to capture the progression of luminous reaction during the deflagration-to-detonation transition of the HMX-based (octahydro-1, 3, 5, 7-tetranitro-1, 3, 5, 7-tetrazocine) plastic bonded explosive (PBX) formulation during cookoff.

  13. August Rauber (1841-1917): from the primitive streak to Cellularmechanik.

    PubMed

    Brauckmann, Sabine

    2006-01-01

    In the early 19th century Karl Ernst von Baer initiated a new research program searching for the mechanisms by which an egg transforms itself into an embryo. August Rauber (1841-1917) took up this challenge. He considered the phylogenetic principle as the right tool to explain the similitude of embryogenetic processes. In extending Baer's approach, he combined comparative embryology and histology in his studies of avian and mammalian embryos. His earlier work demonstrated that the two-layered chick embryo is a modified gastrula and not a "disc" as Wilhelm His had claimed. From the 1880s onwards, he concentrated on the issue of how the development of germ layers is related to tissue differentiation. To address this, he studied the blastopore, epiblast, primitive streak, teratology and the relative importance of nucleus and cytoplasm in heredity. This paper reconstructs some of Rauber's work and concludes that his observations and reflections constituted a new approach combining embryology and histology with "phylogenetic" reasoning. PMID:16586344

  14. Improving the diffraction of full-length human selenomethionyl metavinculin crystals by streak-seeding

    SciTech Connect

    Rangarajan, Erumbi S.; Izard, Tina

    2012-06-28

    Metavinculin is an alternatively spliced isoform of vinculin that has a 68-residue insert in its tail domain (1134 total residues) and is exclusively expressed in cardiac and smooth muscle tissue, where it plays important roles in myocyte adhesion complexes. Mutations in the metavinculin-specific insert are associated with dilated cardiomyopathy (DCM) in man. Crystals of a DCM-associated mutant of full-length selenomethionine-labeled metavinculin grown by hanging-drop vapor diffusion diffracted poorly and were highly sensitive to radiation, preventing the collection of a complete X-ray diffraction data set at the highest possible resolution. Streak-seeding markedly improved the stability, crystal-growth rate and diffraction quality of DCM-associated mutant metavinculin crystals, allowing complete data collection to 3.9 {angstrom} resolution. These crystals belonged to space group P4{sub 3}2{sub 1}2, with two molecules in the asymmetric unit and unit-cell parameters a = b = 170, c = 211 {angstrom}, {alpha} = {beta} = {gamma} = 90{sup o}.

  15. Streak spectroscopy and velocimetry of electrically exploded Ni/Al laminates

    NASA Astrophysics Data System (ADS)

    Morris, Christopher J.; Wilkins, Paul R.; May, Chadd M.

    2013-01-01

    We present an experimental and theoretical study of electrically exploded nickel-aluminum (Ni/Al) laminates, lithographically patterned into bow-tie bridge regions, and encapsulated with parylene. The exothermic nature of Ni/Al reactions is well-known at typical self-heating rates of 103-106 K/s, but electrical heating allows the interrogation of phenomena at heating rates which are five to six orders of magnitude higher. The use of time-resolved streak camera emission spectroscopy revealed that Ni/Al laminates heated at these higher rates exhibited brighter emission during the first 150 ns of emission than samples composed of either Al or Ni alone, suggesting an exothermic effect which rapidly started and persisted for at least this length of time. We also measured the transduction of electrical energy into kinetic energy through velocity measurements of encapsulation layers ejected from the bridge region. An empirical model using experimental power curves and one empirical fitting parameter successfully predicted these velocities. This model agreed well with experiments from different Al and Ni samples using the same fitting parameter, but an apparent 1.2 J/mg of additional energy from the mixing of Ni and Al was necessary to accurately predict velocities from Ni/Al laminate samples. This energy quantity corresponded to a reference value for the enthalpy of mixing Ni and Al, and likely contributed to both brighter emission and higher than expected velocities observed.

  16. Streaked optical pyrometer for measuring surface temperature of ion heated plasma

    NASA Astrophysics Data System (ADS)

    Roycroft, R.; Dyer, G. M.; Wagner, C.; Bernstein, A.; Ditmire, T.; Hegelich, B. M.; Albright, B. J.; Fernandez, J. C.; Bang, W.; Bradley, P. A.; Gautier, D. C.; Hamilton, C. E.; Palaniyappan, S.; Santiago Cordoba, M. A.; Vold, E. L.; Yin, L.

    2015-11-01

    The evolution of the interface between a light and heavy material isochorically heated to warm dense matter conditions is important to the understanding of electrostatic effects on the usual hydrodynamic understanding of fluid mixing. In recent experiments at the Trident laser facility in Los Alamos National Laboratory, the target, containing a high Z and a low Z material, is heated to several eV by laser accelerated aluminum ions. We fielded a streaked optical pyrometer to measure surface temperature. The pyrometer images the back surface of a heated target on a sub-nanosecond timescale with 400nm light from the plasma. This poster presents the details of the experimental setup and pyrometer design, as well as initial results of ion heating of aluminum targets. The interface between heated diamond and gold is also observed. Work supported by NNSA cooperative agreement DE-NA0002008 and the Los Alamos National Laboratory Directed Research and Development Program under the auspices of the U.S. DOE NNSAS, LLC, Los Alamos National Laboratory under Contract No. DE-AC52-06NA25396.

  17. Studying the Equation of State of Isochorically Heated Al Using Streaked Optical Pyrometry

    NASA Astrophysics Data System (ADS)

    Haberberger, D.; Nilson, P. M.; Gregor, M. C.; Boehly, T. R.; Froula, D. H.

    2014-10-01

    The thermal equilibration rates of warm (few eV) dense (~1023 g/cm3) matter is important in high-energy-density physics. The OMEGA EP laser was used to isochorically heat a 20- μm-thick Al target using a short-pulse beam with 250 J in a 10-ps pulse. Twenty OMEGA beams were used to drive a Ti backlighter to radiograph the expansion of the foil using an x-ray framing camera (XRFC). The short duration of the heating laser pulse and the subsequent hot-electron energy deposition inside the target ensure minimal hydrodynamic expansion during the target heating phase. Streaked optical pyrometry (SOP) was used to measure the surface temperature of the foil. Together, these two measurements can be used to determine the equation of state along the release isentrope of the isochorically heated Al foil. Initial analysis of the SOP and XRFC data indicate the Al foil was heated to temperatures of tens of eV. This material is based upon work supported by the Department of Energy National Nuclear Security Administration under Award Number DE-NA0001944.

  18. Hairpin RNA Targeting Multiple Viral Genes Confers Strong Resistance to Rice Black-Streaked Dwarf Virus

    PubMed Central

    Wang, Fangquan; Li, Wenqi; Zhu, Jinyan; Fan, Fangjun; Wang, Jun; Zhong, Weigong; Wang, Ming-Bo; Liu, Qing; Zhu, Qian-Hao; Zhou, Tong; Lan, Ying; Zhou, Yijun; Yang, Jie

    2016-01-01

    Rice black-streaked dwarf virus (RBSDV) belongs to the genus Fijivirus in the family of Reoviridae and causes severe yield loss in rice-producing areas in Asia. RNA silencing, as a natural defence mechanism against plant viruses, has been successfully exploited for engineering virus resistance in plants, including rice. In this study, we generated transgenic rice lines harbouring a hairpin RNA (hpRNA) construct targeting four RBSDV genes, S1, S2, S6 and S10, encoding the RNA-dependent RNA polymerase, the putative core protein, the RNA silencing suppressor and the outer capsid protein, respectively. Both field nursery and artificial inoculation assays of three generations of the transgenic lines showed that they had strong resistance to RBSDV infection. The RBSDV resistance in the segregating transgenic populations correlated perfectly with the presence of the hpRNA transgene. Furthermore, the hpRNA transgene was expressed in the highly resistant transgenic lines, giving rise to abundant levels of 21–24 nt small interfering RNA (siRNA). By small RNA deep sequencing, the RBSDV-resistant transgenic lines detected siRNAs from all four viral gene sequences in the hpRNA transgene, indicating that the whole chimeric fusion sequence can be efficiently processed by Dicer into siRNAs. Taken together, our results suggest that long hpRNA targeting multiple viral genes can be used to generate stable and durable virus resistance in rice, as well as other plant species. PMID:27187354

  19. Improved detection of episomal Banana streak viruses by multiplex immunocapture PCR.

    PubMed

    Le Provost, Grégoire; Iskra-Caruana, Marie-Line; Acina, Isabelle; Teycheney, Pierre-Yves

    2006-10-01

    Banana streak viruses (BSV) are currently the main viral constraint to Musa germplasm movement, genetic improvement and mass propagation. Therefore, it is necessary to develop and implement BSV detection strategies that are both reliable and sensitive, such as PCR-based techniques. Unfortunately, BSV endogenous pararetrovirus sequences (BSV EPRVs) are present in the genome of Musa balbisiana. They interfere with PCR-based detection of episomal BSV in infected banana and plantain, such as immunocapture PCR. Therefore, a multiplex, immunocapture PCR (M-IC-PCR) was developed for the detection of BSV. Musa sequence tagged microsatellite site (STMS) primers were selected and used in combination with BSV species-specific primers in order to monitor possible contamination by Musa genomic DNA, using multiplex PCR. Furthermore, immunocapture conditions were optimized in order to prevent Musa DNA from interfering with episomal BSV DNA during the PCR step. This improved detection method successfully allowed the accurate, specific and sensitive detection of episomal DNA only from distinct BSV species. Its implementation should benefit PCR-based detection of viruses for which homologous sequences are present in the genome of their hosts, including transgenic plants expressing viral sequences.

  20. Compositional mapping of cholesteryl ester droplets in the fatty streaks of human aorta.

    PubMed

    Hillman, G M; Engelman, D M

    1976-10-01

    Frozen sections prepared from human aortic tissue containing fatty streak lesions were examined on a thermally controlled stage with a polarizing light microscope. Distinct birefringent droplets, 0.5-5 mum in diameter, were observed, many apparently aggregated into clusters. The clusters were about 20 X 20 mum in diameter (the approximate size of foam cells). Upon being heated, each smectic droplet exhibited a sudden change of birefringence, indicating a change of state. The transition temperatures were compared to assess compositional distributions in the tissue. We found that for 52% of the clusters the standard deviation of the cluster's droplet melting point distribution was less than half that observed in the surrounding microscopic field. If clusters were intracellular lipid inclusions, this observation indicates that the lipid composition within a foam cell is more homogeneous than that of the overall field. However, using statistical methods, we compared droplet melting populations from cluster to cluster and found significant heterogeneity. The observations can be interpreted to suggest that many foam cells modify the cholesteryl ester fatty acid composition of their accumulations be selective uptake, temporal sampling, or chemical reaction. Furthermore, the intercellular heterogeneity suggests that different cells in the lesion may have different metabolic and transport enzyme affinities or be in different states.

  1. Time-resolved measurement technique for pulsed electron beam envelope basing on framing and streaking principle

    NASA Astrophysics Data System (ADS)

    Jiang, Xiao-Guo; Wang, Yuan; Yang, Zhi-Yong; Zhang, Huang; Wang, Yi

    2016-01-01

    The time-resolved electron beam envelope parameters, including cross sectional distribution and beam centroid position, are very important for the study of beam transmission characteristics in a magnetic field and for verifying the rationality of the magnetic field parameters employed. One kind of high time-resolved beam envelope measurement system has recently been developed, constituted of a high-speed framing camera and a streak camera. It can obtain three panoramic images of the beam and time continuous information along the given beam profile simultaneously. Recently obtained data has proved that several fast vibrations of the beam envelope along the diameter direction occur during the front and the tail parts of the electron beam. The vibration period is several nanoseconds. The effect of magnetic field on the electron beam is also observed and verified. Beam debugging experiments have proved that the existing beam transmission design is reasonable and viable. This beam envelope measurement system will establish a good foundation for beam physics research. Supported by National Natural Science Foundation of China (10675104, 11375162)

  2. Asymptotic theory of the pre-transitional laminar streaks and comparison with experiments

    NASA Astrophysics Data System (ADS)

    Ricco, Pierre

    The response of the Blasius boundary layer to free-stream vortical disturbances of the convected gust type is studied. The vorticity signature of the boundary layer is computed through the boundary-region equations, which are the rigorous asymptotic limit of the Navier-Stokes equations for low-frequency disturbances. The method of matched asymptotic expansion is employed to obtain the initial and outer boundary conditions. The gust viscous dissipation and upward displacement due to the mean boundary layer produce significant changes on the fluctuations within the viscous region. The boundary-layer response induced by a threedimensional gust with spanwise wavelength comparable with the boundary-layer thickness is computed with first-order accuracy in the outer part of the boundary layer and with second-order accuracy in the core of it. The boundary-layer fluctuations of the streamwise velocity match the corresponding free-stream velocity component so that a realistic streak profile is obtained. A good agreement with the experimental data by [4] is found.

  3. Hairpin RNA Targeting Multiple Viral Genes Confers Strong Resistance to Rice Black-Streaked Dwarf Virus.

    PubMed

    Wang, Fangquan; Li, Wenqi; Zhu, Jinyan; Fan, Fangjun; Wang, Jun; Zhong, Weigong; Wang, Ming-Bo; Liu, Qing; Zhu, Qian-Hao; Zhou, Tong; Lan, Ying; Zhou, Yijun; Yang, Jie

    2016-01-01

    Rice black-streaked dwarf virus (RBSDV) belongs to the genus Fijivirus in the family of Reoviridae and causes severe yield loss in rice-producing areas in Asia. RNA silencing, as a natural defence mechanism against plant viruses, has been successfully exploited for engineering virus resistance in plants, including rice. In this study, we generated transgenic rice lines harbouring a hairpin RNA (hpRNA) construct targeting four RBSDV genes, S1, S2, S6 and S10, encoding the RNA-dependent RNA polymerase, the putative core protein, the RNA silencing suppressor and the outer capsid protein, respectively. Both field nursery and artificial inoculation assays of three generations of the transgenic lines showed that they had strong resistance to RBSDV infection. The RBSDV resistance in the segregating transgenic populations correlated perfectly with the presence of the hpRNA transgene. Furthermore, the hpRNA transgene was expressed in the highly resistant transgenic lines, giving rise to abundant levels of 21-24 nt small interfering RNA (siRNA). By small RNA deep sequencing, the RBSDV-resistant transgenic lines detected siRNAs from all four viral gene sequences in the hpRNA transgene, indicating that the whole chimeric fusion sequence can be efficiently processed by Dicer into siRNAs. Taken together, our results suggest that long hpRNA targeting multiple viral genes can be used to generate stable and durable virus resistance in rice, as well as other plant species. PMID:27187354

  4. The genetic architecture of maize height.

    PubMed

    Peiffer, Jason A; Romay, Maria C; Gore, Michael A; Flint-Garcia, Sherry A; Zhang, Zhiwu; Millard, Mark J; Gardner, Candice A C; McMullen, Michael D; Holland, James B; Bradbury, Peter J; Buckler, Edward S

    2014-04-01

    Height is one of the most heritable and easily measured traits in maize (Zea mays L.). Given a pedigree or estimates of the genomic identity-by-state among related plants, height is also accurately predictable. But, mapping alleles explaining natural variation in maize height remains a formidable challenge. To address this challenge, we measured the plant height, ear height, flowering time, and node counts of plants grown in >64,500 plots across 13 environments. These plots contained >7300 inbreds representing most publically available maize inbreds in the United States and families of the maize Nested Association Mapping (NAM) panel. Joint-linkage mapping of quantitative trait loci (QTL), fine mapping in near isogenic lines (NILs), genome-wide association studies (GWAS), and genomic best linear unbiased prediction (GBLUP) were performed. The heritability of maize height was estimated to be >90%. Mapping NAM family-nested QTL revealed the largest explained 2.1 ± 0.9% of height variation. The effects of two tropical alleles at this QTL were independently validated by fine mapping in NIL families. Several significant associations found by GWAS colocalized with established height loci, including brassinosteroid-deficient dwarf1, dwarf plant1, and semi-dwarf2. GBLUP explained >80% of height variation in the panels and outperformed bootstrap aggregation of family-nested QTL models in evaluations of prediction accuracy. These results revealed maize height was under strong genetic control and had a highly polygenic genetic architecture. They also showed that multiple models of genetic architecture differing in polygenicity and effect sizes can plausibly explain a population's variation in maize height, but they may vary in predictive efficacy.

  5. Transcriptional activity of transposable elements in maize

    PubMed Central

    2010-01-01

    Background Mobile genetic elements represent a high proportion of the Eukaryote genomes. In maize, 85% of genome is composed by transposable elements of several families. First step in transposable element life cycle is the synthesis of an RNA, but few is known about the regulation of transcription for most of the maize transposable element families. Maize is the plant from which more ESTs have been sequenced (more than two million) and the third species in total only after human and mice. This allowed us to analyze the transcriptional activity of the maize transposable elements based on EST databases. Results We have investigated the transcriptional activity of 56 families of transposable elements in different maize organs based on the systematic search of more than two million expressed sequence tags. At least 1.5% maize ESTs show sequence similarity with transposable elements. According to these data, the patterns of expression of each transposable element family is variable, even within the same class of elements. In general, transcriptional activity of the gypsy-like retrotransposons is higher compared to other classes. Transcriptional activity of several transposable elements is specially high in shoot apical meristem and sperm cells. Sequence comparisons between genomic and transcribed sequences suggest that only a few copies are transcriptionally active. Conclusions The use of powerful high-throughput sequencing methodologies allowed us to elucidate the extent and character of repetitive element transcription in maize cells. The finding that some families of transposable elements have a considerable transcriptional activity in some tissues suggests that, either transposition is more frequent than previously expected, or cells can control transposition at a post-transcriptional level. PMID:20973992

  6. Study Progress on Tissue Culture of Maize Mature Embryo

    NASA Astrophysics Data System (ADS)

    Wang, Hongzhen; Cheng, Jun; Cheng, Yanping; Zhou, Xioafu

    It has been paid more and more attention on maize tissue culture as it is a basic work in maize genetic transformation, especially huge breakthrough has been made in maize tissue culture utilizing mature embryos as explants in the recent years. This paper reviewed the study progress on maize tissue culture and plant regeneration utilizing mature embryos as explants from callus induction, subculture, plant regeneration and browning reduction and so on.

  7. Meso-beta scale numerical simulation studies of terrain-induced jet streak mass/momentum perturbations

    NASA Technical Reports Server (NTRS)

    Lin, Yuh-Lang; Kaplan, Michael L.

    1995-01-01

    Mesoscale model simulations provide insight into the complex jet streak adjustments on 11-12 July 1981 that preceded the first of two significant gravity wave events to have been generated over the Rocky Mountains in Montana. Simulations employing a variety of terrain treatments indicate that prior to wave formation, geostrophic adjustment processes modified the structure of the mid-upper tropospheric jet streak by creating secondary jetlets to the southeast of the polar jet streak in proximity to the gravity wave generation region. This simulated restructuring of the mid-upper tropospheric jet streak is the result of a four stage process. During stage 1, the wind adjusts to the mass field as the jet streak exit region propagates into the inflection point between the upstream trough and downstream ridge in the height field. Stage 2 is initiated as the mass field is forced to adjust to the new ageostrophic wind field created during stage 1. Stage 3 is defined by a second geostrophic adjustment process occurring in a similar manner but to the south and east of the adjustment which occurs during stage 1. A low-level mesoscale jetlet is formed during stage 4 in response to the low-level pressure falls that are established during stage 3. The perturbation of this jetlet, caused by orographically-induced adiabatic and diabatic physical processes, is the likely mechanism responsible for the generation of the first and second episode of observed gravity waves. The dynamics responsible for this wave episode are discussed as differential surface sensible heating inducing an orographically-forced mountain-plains solenoid, resulting in the formation of additional mesoscale jetlets and internal gravity waves. Also discussed is how convective latent heating modifies the numerically simulated terrain-induced internal gravity waves, especially their amplitude and phase velocities, which provide better agreement with those wave characteristics observed in nature. Finally, the three

  8. A One-Step Real-Time RT-PCR Assay for the Detection and Quantitation of Sugarcane Streak Mosaic Virus

    PubMed Central

    Fu, Wei-Lin; Sun, Sheng-Ren; Fu, Hua-Ying; Chen, Ru-Kai; Su, Jin-Wei; Gao, San-Ji

    2015-01-01

    Sugarcane mosaic disease is caused by the Sugarcane streak mosaic virus (SCSMV; genus Poacevirus, family Potyviridae) which is common in some Asian countries. Here, we established a protocol of a one-step real-time quantitative reverse transcription PCR (real-time qRT-PCR) using the TaqMan probe for the detection of SCSMV in sugarcane. Primers and probes were designed within the conserved region of the SCSMV coat protein (CP) gene sequences. Standard single-stranded RNA (ssRNA) generated by PCR-based gene transcripts of recombinant pGEM-CP plasmid in vitro and total RNA extracted from SCSMV-infected sugarcane were used as templates of qRT-PCR. We further performed a sensitivity assay to show that the detection limit of the assay was 100 copies of ssRNA and 2 pg of total RNA with good reproducibility. The values obtained were approximately 100-fold more sensitive than those of the conventional RT-PCR. A higher incidence (68.6%) of SCSMV infection was detected by qRT-PCR than that (48.6%) with conventional RT-PCR in samples showing mosaic symptoms. SCSMV-free samples were verified by infection with Sugarcane mosaic virus (SCMV) or Sorghum mosaic virus (SrMV) or a combination of both. The developed qRT-PCR assay may become an alternative molecular tool for an economical, rapid, and efficient detection and quantification of SCSMV. PMID:26185758

  9. Real-time quantitative polymerase chain reaction methods for four genetically modified maize varieties and maize DNA content in food.

    PubMed

    Brodmann, Peter D; Ilg, Evelyn C; Berthoud, Hélène; Herrmann, Andre

    2002-01-01

    Quantitative detection methods are needed for enforcement of the recently introduced labeling threshold for genetically modified organisms (GMOs) in food ingredients. This labeling threshold, which is set to 1% in the European Union and Switzerland, must be applied to all approved GMOs. Four different varieties of maize are approved in the European Union: the insect-resistant Bt176 maize (Maximizer), Btl 1 maize, Mon810 (YieldGard) maize, and the herbicide-tolerant T25 (Liberty Link) maize. Because the labeling must be considered individually for each ingredient, a quantitation system for the endogenous maize content is needed in addition to the GMO-specific detection systems. Quantitative real-time polymerase chain reaction detection methods were developed for the 4 approved genetically modified maize varieties and for an endogenous maize (invertase) gene system.

  10. Perturbation of Maize Phenylpropanoid Metabolism by an AvrE Family Type III Effector from Pantoea stewartii1[OPEN

    PubMed Central

    Asselin, Jo Ann E.; Lin, Jinshan; Perez-Quintero, Alvaro L.; Gentzel, Irene; Majerczak, Doris; Opiyo, Stephen O.; Zhao, Wanying; Paek, Seung-Mann; Kim, Min Gab; Coplin, David L.; Blakeslee, Joshua J.; Mackey, David

    2015-01-01

    AvrE family type III effector proteins share the ability to suppress host defenses, induce disease-associated cell death, and promote bacterial growth. However, despite widespread contributions to numerous bacterial diseases in agriculturally important plants, the mode of action of these effectors remains largely unknown. WtsE is an AvrE family member required for the ability of Pantoea stewartii ssp. stewartii (Pnss) to proliferate efficiently and cause wilt and leaf blight symptoms in maize (Zea mays) plants. Notably, when WtsE is delivered by a heterologous system into the leaf cells of susceptible maize seedlings, it alone produces water-soaked disease symptoms reminiscent of those produced by Pnss. Thus, WtsE is a pathogenicity and virulence factor in maize, and an Escherichia coli heterologous delivery system can be used to study the activity of WtsE in isolation from other factors produced by Pnss. Transcriptional profiling of maize revealed the effects of WtsE, including induction of genes involved in secondary metabolism and suppression of genes involved in photosynthesis. Targeted metabolite quantification revealed that WtsE perturbs maize metabolism, including the induction of coumaroyl tyramine. The ability of mutant WtsE derivatives to elicit transcriptional and metabolic changes in susceptible maize seedlings correlated with their ability to promote disease. Furthermore, chemical inhibitors that block metabolic flux into the phenylpropanoid pathways targeted by WtsE also disrupted the pathogenicity and virulence activity of WtsE. While numerous metabolites produced downstream of the shikimate pathway are known to promote plant defense, our results indicate that misregulated induction of phenylpropanoid metabolism also can be used to promote pathogen virulence. PMID:25635112

  11. MaizeGDB: everything old is new again! [abstract

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The focus of genetic, genomic, and breeding research evolves over time, making it necessary to continually redefine the paradigm for data access and data analysis tools. Here we report the reinvention of MaizeGDB, the maize genetics and genomics database, to meet maize researchers’ ever changing nee...

  12. Comprehensive genotyping of the USA national maize inbred seed bank

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The germplasm bank at the USDA-ARS North Central Regional Plant Introduction Station (NCRPIS) in Ames, Iowa, preserves maize inbred lines from breeding programs from all over the world, including some of the key lines from the breeding history of maize. We genotyped 2,815 maize inbred accessions, mo...

  13. Occurrence of Fusarium species and mycotoxins in nepalese maize and wheat and the effect of traditional processing methods on mycotoxin levels.

    PubMed

    Desjardins, A E; Manandhar, G; Plattner, R D; Maragos, C M; Shrestha, K; McCormick, S P

    2000-04-01

    Maize (Zea mays) and wheat (Triticum aestivum) collected in the foothills of the Nepal Himalaya Mountains were analyzed for Fusarium species and mycotoxins: fumonisins, nivalenol (NIV), and deoxynivalenol (DON). Predominant species were Gibberella fujikuroi mating population A (F. moniliforme) in maize and F. graminearum in maize and wheat; G. fujikuroi mating population D (F. proliferatum), F. acuminatum, F. avenaceum, F. chlamydosporum, F. equiseti, F. oxysporum, F. semitectum, and F. torulosum were also present. Strains of G. fujikuroi mating population A produced fumonisins, and strains of F. graminearum produced NIV or DON. By immunoassay or high-performance liquid chromatography, fumonisins were >1000 ng/g in 22% of 74 maize samples. By immunoassay or fluorometry, NIV and DON were >1000 ng/g in 16% of maize samples but were not detected in wheat. Fumonisins and DON were not eliminated by traditional fermentation for producing maize beer, but Nepalese rural and urban women were able to detoxify contaminated maize by hand-sorting visibly diseased kernels.

  14. Transmission of maize chromosome 9 rearrangements in oat-maize radiation hybrids.

    PubMed

    Vales, M Isabel; Riera-Lizarazu, Oscar; Rines, Howard W; Phillips, Ronald L

    2004-12-01

    Oat-maize radiation hybrids are oat (Avena sativa L.) plants carrying radiation-induced subchromosome fragments of a given maize (Zea mays L.) chromosome. Since first-generation radiation hybrids contain various maize chromosome rearrangements in a hemizygous condition, variation might be expected in the transmission of these rearrangements to subsequent generations. The transmission and integrity of maize chromosome 9 rearrangements were evaluated in progenies of 30 oat-maize radiation hybrids by using a series of DNA-based markers and by genomic in situ hybridization. Maize chromosome 9 rearrangements were reisolated by self-fertilization in 24 of the 30 radiation hybrid lineages. Normal and deleted versions of maize chromosome 9 were transmitted at similar frequencies of 9.1% and 7.6%, respectively, while intergenomic translocations were transmitted at a significantly higher frequency of 47.6%. Most lines (93%) that inherited a rearrangement had it in the hemizygous condition. Lines with a rearrangement in the homozygous state (7%) were only identified in lineages with intergenomic translocations. Homozygous lines are more desirable from the perspective of stock maintenance, since they may stably transmit a given rearrangement to a subsequent generation. However, their isolation is not strictly required, since hemizygous lines can also be used for genome mapping studies.

  15. Fate of maize intrinsic and recombinant genes in calves fed genetically modified maize Bt11.

    PubMed

    Chowdhury, Emdadull H; Mikami, Osamu; Murata, Hideo; Sultana, Parvin; Shimada, Nobuaki; Yoshioka, Miyako; Guruge, Keerthi S; Yamamoto, Sachiko; Miyazaki, Shigeru; Yamanaka, Noriko; Nakajima, Yasuyuki

    2004-02-01

    The presence of maize intrinsic and recombinant cry1Ab genes in the gastrointestinal (GI) contents, peripheral blood mononuclear cells (PBMC), and visceral organs of calves fed genetically modified Bt11 maize was examined by PCR in a subchronic 90-day performance study. Samples were collected from six Japanese Black/Holstein calves fed Bt11 maize and from six calves fed non-Bt maize. Fragments of maize zein (Ze1), invertase, chloroplast, and cry1Ab were detected inconsistently in the rumen fluid and rectal contents 5 and 18 h after feeding. The chloroplast DNA fragments of ribulose-1,5-bisphosphate carboxylase/oxygenase and tRNA were detected inconsistently in the PBMC, the visceral organs, and the longissimus muscle, while the cry1Ab gene was never detected in PBMC or in the visceral organs. These results suggest that feed-derived maize DNA was mostly degraded in the GI tract but that fragmented DNA was detectable in the GI contents as a possible source of transfer to calf tissues. These results also suggest that the recombinant cry1Ab genes were not transferred to the PBMC and tissues of calves fed Bt11 maize.

  16. Household dietary exposure to aflatoxins from maize and maize products in Kenya.

    PubMed

    Kilonzo, Robert M; Imungi, Jasper K; Muiru, William M; Lamuka, Peter O; Njage, Patrick M Kamau

    2014-01-01

    Aflatoxicosis has repeatedly affected Kenyans, particularly in the eastern region, due to consumption of contaminated maize. However, save for the cases of acute toxicity, the levels of sub-lethal exposure have not been adequately assessed. It is believed that this type of exposure does exist even during the seasons when acute toxicity does not occur. This study, therefore, was designed to assess the exposure of households to aflatoxins through consumption of maize and maize products. Twenty samples each of maize kernels, muthokoi and maize meal were randomly sampled from households in Kibwezi District of Makueni County in Eastern Kenya and analysed for aflatoxin contamination. The samples were quantitatively analysed for aflatoxin contamination using HPLC. The uncertainty and variability in dietary exposure was quantitatively modelled in Ms Excel using Monte Carlo simulation in @Risk software. Aflatoxins were found in 45% of maize kernels at between 18 and 480 μg kg⁻¹, 20% of muthokoi at between 12 and 123 μg kg⁻¹, and 35% of maize meal at between 6 and 30 μg kg⁻¹. The mean dietary exposure to aflatoxin in maize kernels was 292 ± 1567 ng kg⁻¹ body weight day⁻¹, while the mean dietary exposure to aflatoxin in maize meal and muthokoi were 59 ± 62 and 27 ± 154 ng kg⁻¹ body weight day⁻¹ respectively. The results showed that the amount and frequency of consumption of the three foods is the more important contributing factor than the mean aflatoxin concentration levels, to the risk of dietary exposure to aflatoxins.

  17. 2D Optical Streaking for Ultra-Short Electron Beam Diagnostics

    SciTech Connect

    Ding, Y.T.; Huang, Z.; Wang, L.; /SLAC

    2011-12-14

    We propose a novel approach to measure short electron bunch profiles at micrometer level. Low energy electrons generated during beam-gas ionization are simultaneously modulated by the transverse electric field of a circularly-polarized laser, and then they are collected at a downstream screen where the angular modulation is converted to a circular shape. The longitudinal bunch profile is simply represented by the angular distribution of the electrons on the screen. We only need to know the laser wavelength for calibration and there is no phase synchronization problem. Meanwhile the required laser power is also relatively low in this setup. Some simulations examples and experimental consideration of this method are discussed. At Linac Coherent Light Source (LCLS), an S-band RF transverse deflector (TCAV) is used to measure the bunch length with a resolution 10 femtosecond (fs) rms. An X-band deflector (wavelength 2.6cm) is proposed recently to improve the resolution. However, at the low charge operation mode (20pC), the pulse length can be as short as fs. It is very challenging to measure femtosecond and sub-femtosecond level bunch length. One of the methods is switching from RF to {mu}m level wavelength laser to deflect the bunch. A powerful laser ({approx}10s GW) is required to deflect such a high energy beam (GeV) in a wiggler. Synchronization is another difficulty: the jitter between the bunch and the laser can be larger than the laser wavelength, which makes single-shot measurement impossible. To reduce the laser power, we propose to use ionized electrons from high energy electron beam and gas interaction for high energy electron bunch diagnostics. Similarly, the femtosecond X-ray streak camera uses X-ray ionization electrons to measure the X-ray pulse. The electrons generated by beam-gas ionization have low energy (eVs). Therefore, a lower laser power is possible to deflect such low energy electrons. Note that there is no field ionization in our case. To avoid

  18. Closed-loop control of boundary layer streaks induced by free-stream turbulence

    NASA Astrophysics Data System (ADS)

    Papadakis, George; Lu, Liang; Ricco, Pierre

    2016-08-01

    The central aim of the paper is to carry out a theoretical and numerical study of active wall transpiration control of streaks generated within an incompressible boundary layer by free-stream turbulence. The disturbance flow model is based on the linearized unsteady boundary-region (LUBR) equations, studied by Leib, Wundrow, and Goldstein [J. Fluid Mech. 380, 169 (1999), 10.1017/S0022112098003504], which are the rigorous asymptotic limit of the Navier-Stokes equations for low-frequency and long-streamwise wavelength. The mathematical formulation of the problem directly incorporates the random forcing into the equations in a consistent way. Due to linearity, this forcing is factored out and appears as a multiplicative factor. It is shown that the cost function (integral of kinetic energy in the domain) is properly defined as the expectation of a random quadratic function only after integration in wave number space. This operation naturally introduces the free-stream turbulence spectral tensor into the cost function. The controller gains for each wave number are independent of the spectral tensor and, in that sense, universal. Asymptotic matching of the LUBR equations with the free-stream conditions results in an additional forcing term in the state-space system whose presence necessitates the reformulation of the control problem and the rederivation of its solution. It is proved that the solution can be obtained analytically using an extension of the sweep method used in control theory to obtain the standard Riccati equation. The control signal consists of two components, a feedback part and a feed-forward part (that depends explicitly on the forcing term). Explicit recursive equations that provide these two components are derived. It is shown that the feed-forward part makes a negligible contribution to the control signal. We also derive an explicit expression that a priori (i.e., before solving the control problem) leads to the minimum of the objective cost

  19. Physiological Responses of Hard Red Winter Wheat to Infection by Wheat streak mosaic virus.

    PubMed

    Pradhan, Gautam P; Xue, Qingwu; Jessup, Kirk E; Hao, Baozhen; Price, Jacob A; Rush, Charles M

    2015-05-01

    Wheat streak mosaic virus (WSMV) causes significant yield loss in hard red winter wheat in the U.S. Southern High Plains. Despite the prevalence of this pathogen, little is known about the physiological response of wheat to WSMV infection. A 2-year study was initiated to (i) investigate the effect of WSMV, inoculated at different development stages, on shoot and root growth, water use, water use efficiency (WUE), and photosynthesis and (ii) understand the relationships between yield and photosynthetic parameters during WSMV infection. Two greenhouse experiments were conducted with two wheat cultivars mechanically inoculated with WSMV at different developmental stages, from three-leaf to booting. WSMV inoculated early, at three- to five-leaf stage, resulted in a significant reduction in shoot biomass, root dry weight, and yield compared with wheat infected at the jointing and booting stages. However, even when inoculated as late as jointing, WSMV still reduced grain yield by at least 53%. Reduced tillers, shoot biomass, root dry weight, water use, and WUE contributed to yield loss under WSMV infection. However, infection by WSMV did not affect rooting depth and the number of seminal roots but reduced the number of nodal roots. Leaf photosynthetic parameters (chlorophyll [SPAD], net photosynthetic rate [Pn], stomatal conductance [Gs], intercellular CO2 concentration [Ci], and transpiration rate [Tr]) were reduced when infected by WSMV, and early infection reduced parameters more than late infection. Photosynthetic parameters had a linear relationship with grain yield and shoot biomass. The reduced Pn under WSMV infection was mainly in response to decreased Gs, Ci, and SPAD. The results of this study indicated that leaf chlorophyll and gas exchange parameters can be used to quantify WSMV effects on biomass and grain yield in wheat.

  20. Streaked Imaging of Ablative Richtmyer--Meshkov Growth in ICF Targets on OMEGA

    NASA Astrophysics Data System (ADS)

    Gotchev, O. V.; Goncharov, V. N.; Jaanimagi, P. A.; Knauer, J. P.; Meyerhofer, D. D.

    2003-10-01

    Dynamic overpressure sets the growth rate of the ablative Richtmyer--Meshkov (RM) instability and the seeds for subsequent growth of perturbations due to the Rayleigh--Taylor instability in directly driven ICF targets. It leads to temporal oscillations of the perturbed ablation front, which have been predicted analytically,(V.N. Goncharov, Phys. Rev. Lett. 82), 2091 (1999). observed in 2-D ORCHID hydrodynamic simulations, and measured experimentally.(Y. Aglitskiy et al.), Phys. Plasmas 9, 2264 (2002). These predictions were verified on OMEGA by measuring the perturbation amplitudes and frequencies directly, through face-on x-ray radiography. Experiments with a high-resolution, Ir-coated Kirkpatrick--Baez microscope, coupled to a high-current streak tube, provided a continuous record of the target areal density during shock transit, while it was dominated by the evolution of the RM instability. Planar plastic targets with variable thicknesses (30 to 60 μm) and single-mode (λ = 10 to 30 μm) ripples on the front surface were irradiated with 1.5-ns square UV laser pulses with intensities---ranging from 5 × 10^13 W/cm^2 to 4 × 10^14 W/cm^2. Results clearly indicate a phase reversal in the evolution of the target areal density perturbations, in good agreement with theory and simulation. The predicted dependence of the oscillation period on laser intensity and modulation wavelength was quantified. This work was supported by the U.S. Department of Energy Office of Inertial Confinement Fusion under Cooperative Agreement No. DE-FC03-92SF19460.