An Astronomical Glossary.

DTIC Science & Technology

1980-02-12

planet across the limb of the Sun at the end of a transit. Elements of an Orbit - See orbital elements . Elevation - The height of a point on the...That component of libration due to variations in the geometric position of the Earth relative to the Moon. 71 ś" Orbital Elements - The quantities which...completely describe the size, shape, and orientation of an object’s orbit as well as its location in it. The classical set consists of the semi-major

Petrological systematics of mid-ocean ridge basalts: Constraints on melt generation beneath ocean ridges

NASA Astrophysics Data System (ADS)

Langmuir, Charles H.; Klein, Emily M.; Plank, Terry

Mid-ocean ridge basalts (MORB) are a consequence of pressure-release melting beneath ocean ridges, and contain much information concerning melt formation, melt migration and heterogeneity within the upper mantle. MORB major element chemical systematics can be divided into global and local aspects, once they have been corrected for low pressure fractionation and interlaboratory biases. Regional average compositions for ridges unaffected by hot spots ("normal" ridges) can be used to define the global correlations among normalized Na2O, FeO, TiO2 and SiO2 contents, CaO/Al2O3 ratios, axial depth and crustal thickness. Back-arc basins show similar correlations, but are offset to lower FeO and TiO2 contents. Some hot spots, such as the Azores and Galapagos, disrupt the systematics of nearby ridges and have the opposite relationships between FeO, Na2O and depth over distances of 1000 km. Local variations in basalt chemistry from slow- and fast-spreading ridges are distinct from one another. On slow-spreading ridges, correlations among the elements cross the global vector of variability at a high angle. On the fast-spreading East Pacific Rise (EPR), correlations among the elements are distinct from both global and slow-spreading compositional vectors, and involve two components of variation. Spreading rate does not control the global correlations, but influences the standard deviations of axial depth, crustal thickness, and MgO contents of basalts. Global correlations are not found in very incompatible trace elements, even for samples far from hot spots. Moderately compatible trace elements for normal ridges, however, correlate with the major elements. Trace element systematics are significantly different for the EPR and the mid-Atlantic Ridge (MAR). Normal portions of the MAR are very depleted in REE, with little variability; hot spots cause large long wavelength variations in REE abundances. Normal EPR basalts are significantly more enriched than MAR basalts from normal ridges, and still more enriched basalts can erupt sporadically along the entire length of the EPR. This leads to very different histograms of distribution for the data sets as a whole, and a very different distribution of chemistry along strike for the two ridges. Despite these differences, the mean Ce/Sm ratios from the two ridges are identical. Existing methods for calculating the major element compositions of mantle melts [Klein and Langmuir, 1987; McKenzie and Bickle, 1988; Niu and Batiza, 1991] are critically examined. New quantitative methods for mantle melting and high pressure fractionation are developed to evaluate the chemical consequences of melting and fractionation processes and mantle heterogeneity. The new methods rely on new equations for partition coefficients for the major elements between mantle minerals and melts. The melting calculations can be used to investigate the chemical compositions produced by small extents of melting or high pressures of melting that cannot yet be determined experimentally. Application of the new models to the observations described above leads to two major conclusions: (1) The global correlations for normal ridges are caused by variations in mantle temperature, as suggested by Klein and Langmuir [1987] and not by mantle heterogeneity. (2) Local variations are caused by melting processes, but are not yet quantitatively accounted for. On slower spreading ridges, local variations are controlled by the melting regime in the mantle. On the EPR, local variations are predominantly controlled by ubiquitous, small scale heterogeneites. Volatile content may be an important and as yet undetermined factor in affecting the observed variations in major elements. We propose a hypothesis, similar to one proposed by Allegre et al [1984] for isotopic data, to explain the differences between the Atlantic and Pacific local trends, and the trace element systematics of the two ocean basins, as consequences of spreading rate and a different distribution of enriched components from hot spots in the two ocean basins. In the Atlantic, the hot spot influence is in discrete areas, and produces clear depth and chemical anomalies. Ridge segments far from hot spots do not contain enriched basalts. Melting processes associated with slow-spreading ridges vary substantially over short distances along strike and lead to the local trends discussed above, irrespective of hot spot influence. In the Pacific, enriched components appear to have been more thoroughly mixed into the mantle, leading to ubiquitous small scale heterogeneities. Melting processes do not vary appreciably along strike, so local chemical variations are dominated by the relative contribution of enriched component on short time and length scales. Thus the extent of mixing and distribution of enriched components influences strongly the contrasting local major element trends. Despite the difference in the distribution of enriched components, the mean compositions of each data set are equivalent. This suggests that the hot spot influence is similar in the two ocean basins, but its distribution in the upper mantle is different. These contrasting relationships between hot spots and ridges may result from differences in both spreading rate and tectonic history. Unrecognized hot spots may play an important role in diverse aspects of EPR volcanism, and in the chemical systematics of the erupted basalts. The observations and successful models have consequences for melt formation and segregation. (1) The melting process must be closer to fractional melting than equilibrium melting. This result is in accord with inferences from abyssal peridotites [Johnson et al., 1990]. (2) Small melt fractions generated over a range of pressures must be extracted rapidly and efficiently from high pressures within the mantle without experiencing low pressure equilibration during ascent. This requires movement in large channels, and possibly more efficient extraction mechanisms than nonnally envisaged in porous flow models with small residual porosity. (3) Diverse melts from the melting regime produce variations in basalts that are observable at the surface. (4) Basalt data can be used to constrain the melting process (e.g. active vs. passive upwelling) and its relationship to segmentation. The data cannot be used to constrain the shape of the melting regime, however, for many shapes lead to similar chemical results. (5) Highly incompatible elements and U-series disequilibria results appear not yet to be explained by melting models, and may require additional processes not yet clearly envisaged.

Molecular Population Genetics of the Alcohol Dehydrogenase Gene Region of DROSOPHILA MELANOGASTER

PubMed Central

Aquadro, Charles F.; Desse, Susan F.; Bland, Molly M.; Langley, Charles H.; Laurie-Ahlberg, Cathy C.

1986-01-01

Variation in the DNA restriction map of a 13-kb region of chromosome II including the alcohol dehydrogenase structural gene (Adh) was examined in Drosophila melanogaster from natural populations. Detailed analysis of 48 D. melanogaster lines representing four eastern United States populations revealed extensive DNA sequence variation due to base substitutions, insertions and deletions. Cloning of this region from several lines allowed characterization of length variation as due to unique sequence insertions or deletions [nine sizes; 21–200 base pairs (bp)] or transposable element insertions (several sizes, 340 bp to 10.2 kb, representing four different elements). Despite this extensive variation in sequences flanking the Adh gene, only one length polymorphism is clearly associated with altered Adh expression (a copia element approximately 250 bp 5' to the distal transcript start site). Nonetheless, the frequency spectra of transposable elements within and between Drosophila species suggests they are slightly deleterious. Strong nonrandom associations are observed among Adh region sequence variants, ADH allozyme (Fast vs. Slow), ADH enzyme activity and the chromosome inversion ln(2L) t. Phylogenetic analysis of restriction map haplotypes suggest that the major twofold component of ADH activity variation (high vs. low, typical of Fast and Slow allozymes, respectively) is due to sequence variation tightly linked to and possibly distinct from that underlying the allozyme difference. The patterns of nucleotide and haplotype variation for Fast and Slow allozyme lines are consistent with the recent increase in frequency and spread of the Fast haplotype associated with high ADH activity. These data emphasize the important role of evolutionary history and strong nonrandom associations among tightly linked sequence variation as determinants of the patterns of variation observed in natural populations. PMID:3026893

Chemical analysis and geochemical associations in Devonian black shale core samples from Martin County, Kentucky; Carroll and Washington counties, Ohio; Wise County, Virginia; and Overton County, Tennessee

USGS Publications Warehouse

Leventhal, Joel S.

1979-01-01

Core samples from Devonian shales from five localities in the Appalachian Basin have been analyzed for major, minor, and trace constituents. The contents of major elements are rather similar; however, the minor constituents, organic C, S, PO4, and CO3, show variations by a factor of 10. Trace elements Mo, Ni, Cu, V, Co, U, Zn, Hg, As, and Mn show variations that can be related graphically and statistically to the minor constituents. Down-hole plots show the relationships most clearly. Mn is associated with CO3 content, the other trace elements are strongly Controlled by organic C. Amounts of organic C are generally in the range of 3-6 percent, and S is in the range of 2-5 percent. Trace-element amounts show the following general ranges (ppm, parts per million)- Co, 20-40; Cu,40-70; U, 10-40; As, 20-40, V, 150-300; Ni, 80-150; high values are as much as twice these values. The organic C was probably the concentrating agent, whereas the organic C and sulfide S created an environment for preservation or immobilization of trace elements. Closely spaced samples showing an abrupt transition in color from black to gray and gray to black shale show similar effects of trace-element changes, that is, black shale contains enhanced amounts of organic C and trace elements. Ratios of trace elements to organic C or sulfide S were relatively constant even though deposition rates varied from 10 to 300 meters in 5 million years.

Geochemical stratigraphy of two regolith cores from the Central Highlands of the moon

NASA Technical Reports Server (NTRS)

Korotev, R. L.

1991-01-01

High-resolution concentration profiles are presented for 20-22 chemical elements in the under 1-mm grain-size fractions of 60001-7 and 60009/10. Emphasis is placed on the stratigraphic features of the cores, and the fresh results are compared with those of previous petrographic and geochemical studies. For elements associated with major mineral phases, the variations in concentration in both cores exceed that observed in some 40 samples of surface and trench soils. Most of the variation in lithophile element concentrations at depths of 18 to 21 cm results from the mixing of two components - oil that is relatively mafic and rich in incompatible trace elements (ITEs), and coarse-grained anorthosite. The linearity of mixing lines on two-element concentration plots argues that the relative abundances of these various subcomponents are sufficiently uniform from sample to sample and from region to region in the core that the mixture behaves effectively as a single component. Soils at depths of 52-55 cm exhibit very low concentrations of ITEs.

Compositional and mineralogical zoning by inward crystallization of mafic magma: evidence from the Guwoon hornblende gabbro-diorite Complex, Hwacheon, Korea.

NASA Astrophysics Data System (ADS)

Park, Y.-R.; Kim, G.-Y.

2009-04-01

The small body, ca. 1.3 by 1.6km, of a hot-air ballon shape hornblende gabbro - diorite Complex, in Gowoonri, Hwacheon, Korea consists of marginal diorite and central hornblende gabbro. The volumetrically dominant hornblende gabbro in the core of the Complex shows a zoned distribution with three layers distinguished by different dominant mafic mineral phases. From the margin toward the core of the hornblende gabbro body, the domintant mafic minerals change from amphibole phenocryst of nearly rounded shape in cross section with pyroxene pseudomorph through prismatic shape of amphibole to polycrystalline biotite aggregates. Systematic variations in geochemical characteristics among three distinct zones of hornblende gabbro body are also observed. From the outer zone toward the core, major oxides such as MnO, MgO, and CaO show a decreasing tendency, whereas total FeO/(total FeO + MgO) value shows an increasing tendency. Concentrations of trace elements also show systematic variations. Where incompatible elements such as Ba and Th increase, compatible elements like Cr and Sc decrease from the margin toward the core. The zonal distribution divided by change in dominant mafic mineral phase from pyroxene through amphibole to biotite, and systematic compositional changes in both major and trace elements from the outer zone toward the core of the hornblende gabbro body suggest that an inward crystallization mechanism played a major role in the formation of the hornblende gabbro in Guwoonri, Hwacheon, Korea.

Major and trace element chemistry of separated fragments from a hibonite-bearing Allende inclusion

NASA Technical Reports Server (NTRS)

Davis, A. M.; Grossman, L.; Allen, J. M.

1978-01-01

The major and trace elements of separated fragments and a bulk sample from CG-11, a hibonite-bearing inclusion in the Allende meteorite, were analyzed. Major element abundances were used to determine the minerology of separated fragments. The high degree of correlation between Eu/Sm ratios and Lu/Yb ratios for the samples studied indicates that their rare earth element (REE) distributions are governed by two components. One, Lu-, Eu-rich, is probably hibonite; the other, depleted in these elements, seems to be associated with the secondary alteration phases, grossular, nepheline and anorthite. The REE distribution in CG-11 precludes melting events after formation of the secondary alteration phases, but a melting event involving the primary minerals cannot be excluded. The enrichment of Lu with respect to other measured REE in hibonite can be explained by present REE condensation models. Two Hf-bearing components, most likely hibonite and perovskite, are necessary to account for variations in Sc/Hf ratios in the fragments studied. The lithophile volatiles Na, Mn, Fe, Zn, and probably Cr increase in the same order as the amount of secondary alteration minerals; the volatile siderophile elements Co and Au, however, do not.

Major element compositional variation within and between different late Eocene microtektite strewnfields

NASA Astrophysics Data System (ADS)

D'Hondt, S. L.; Keller, G.; Stallard, R. F.

1987-03-01

The major element composition of microspherules from all three late Eocene stratigraphic layers was analyzed using an electron microprobe. The results indicate a major element compositional overlap beween individual microspherules of different microtektite layers or strewn fields. However, multivariate factor analysis shows that the microtektites of the three late Eocene layers follow recognizably different compositional trends. The microtektite population of the North American strewn field is characterized by high concentrations of SiO2, Al2O3, and TiO2; the microspherules of an older layer, the Gl. cerroazulensis Zone, are relatively enriched in FeO and MgO and impoverished in SiO2 and TiO2; while those of the oldest layer in the uppermost G. semiinvoluta Zone are relatively enriched in CaO and impoverished in Al2O3 and Na2O.

Sampling and major element chemistry of the recent (A.D. 1631-1944) Vesuvius activity

USGS Publications Warehouse

Belkin, H.E.; Kilburn, C.R.J.; de Vivo, B.

1993-01-01

Detailed sampling of the Vesuvius lavas erupted in the period A.D. 1631-1944 provides a suite of samples for comprehensive chemical analyses and related studies. Major elements (Si, Ti, Al, Fetotal, Mn, Mg, Ca, Na, K and P), volatile species (Cl, F, S, H2O+, H2O- and CO2), and ferrous iron (Fe2+) were determined for one hundred and forty-nine lavas and five tephra from the A.D. 1631-1944 Vesuvius activity. The lavas represent a relatively homogeneous suite with respect to SiO2, TiO2, FeOtotal, MnO and P2O5, but show systematic variations among MgO, K2O, Na2O, Al2O3 and CaO. The average SiO2 content is 48.0 wt.% and the rocks are classified as tephriphonolites according to their content of alkalis. All of the lavas are silica-undersaturated and are nepheline, leucite, and olivine normative. There is no systematic variation in major-element composition with time, over the period A.D. 1631-1944. The inter-eruption and intra-eruption compositional differences are the same magnitude. The lavas are highly porphyritic with clinopyroxene and leucite as the major phases. Fractionation effects are not reflected in the silica content of the lavas. The variability of MgO, K2O, Na2O, and CaO can be modelled as a relative depletion or accumulation of clinopyroxene. ?? 1993.

Major Breeding Plumage Color Differences of Male Ruffs (Philomachus pugnax) Are Not Associated With Coding Sequence Variation in the MC1R Gene

PubMed Central

Küpper, Clemens; Burke, Terry; Lank, David B.

2015-01-01

Sequence variation in the melanocortin-1 receptor (MC1R) gene explains color morph variation in several species of birds and mammals. Ruffs (Philomachus pugnax) exhibit major dark/light color differences in melanin-based male breeding plumage which is closely associated with alternative reproductive behavior. A previous study identified a microsatellite marker (Ppu020) near the MC1R locus associated with the presence/absence of ornamental plumage. We investigated whether coding sequence variation in the MC1R gene explains major dark/light plumage color variation and/or the presence/absence of ornamental plumage in ruffs. Among 821bp of the MC1R coding region from 44 male ruffs we found 3 single nucleotide polymorphisms, representing 1 nonsynonymous and 2 synonymous amino acid substitutions. None were associated with major dark/light color differences or the presence/absence of ornamental plumage. At all amino acid sites known to be functionally important in other avian species with dark/light plumage color variation, ruffs were either monomorphic or the shared polymorphism did not coincide with color morph. Neither ornamental plumage color differences nor the presence/absence of ornamental plumage in ruffs are likely to be caused entirely by amino acid variation within the coding regions of the MC1R locus. Regulatory elements and structural variation at other loci may be involved in melanin expression and contribute to the extreme plumage polymorphism observed in this species. PMID:25534935

Actualistic models of mantle metasomatism documented in a composite xenolith from Dish Hill, California

USGS Publications Warehouse

Nielson, J.E.; Budahn, J.R.; Unruh, D.M.; Wilshire, H.G.

1993-01-01

Major and trace-element whole rock and mineral variations in composite hornblendite-peridotite xenolith Ba-2-1, from Dish Hill, CA, are due to a single event of metasomatism in the mantle. The hornblendite is the crystallized selvage of a dike conduit charged with incompatible-element-enriched hydrous mafic magma. The magma infiltrated the refractory peridotite wallrock, reacted with its constituent minerals, and simultaneously deposited amphibole. The systematic data from this study show considerable variation in isotopic values and trace elements. These data provide insight into a mantle process that was defined previously from samples without context, lacking evidence about the number or source of metasomatic events. In the contact zone of Ba-2-1, peridotite is enriched in Fe, Ti, CO2) and H2O; clinopyroxene and amphibole also are enriched in Fe and Ti, but clinopyroxene appears slightly depleted in CaO. Compared to chondrites, peridotite, clinopyroxene, and probably amphibole are enriched in light rare earth (LREEcn) and other incompatible trace elements. Values of 87Sr 86Sr and 143Nd 144Nd in the contact zone are close to isotopic equilibrium with the dike. Whole rock and constituent clinopyroxene compositions change to those of refractory peridotite with distance from the contact. These compositional variations were modelled using Gresens' equation for whole-rock major and minor elements, and calculations for isotopic ratios and REEs, which emulate the effects of Chromatographic fractionation. The choice of endmembers was restricted to compositions actually present in mantle samples from Dish Hill. Model results indicate that: 1. (1) the variations can be explained as the result of a single metasomatic event, probably a single pulse of previously fractionated liquid; 2. (2) the ratio of total interacting liquid to peridotite was at least 1:3 by weight in the contact zone; and 3. (3) the composition of the metasomatic liquid changed progressively as it infiltrated beyond that zone. The small distance over which variations occur is due to the small amount of liquid that infiltrated. Only in the contact zone was peridotite wallrock saturated by a liquid composition similar to the dike. Comparison of the Ba-2-1 data with those of another xenolith from Dish Hill suggests that the compositional variations of mantle metasomatism result from both the compositional contrast between the metasomatizing liquid and wallrock and the relative abundances of each. Compositional and volumetric variations of mantle partial melts and their fractionates, and repeated events of melting and reaction in contiguous mantle, can create broad ranges of metasomatic "signatures" from the same process. ?? 1993.

Major and Trace Element Variations in Impact Crater Clay from Chicxulub, Lonar, and Mistastin, Implications for the Martian Soil

NASA Technical Reports Server (NTRS)

Newsom, H. E.; Nelson, M. J.; Shearer, C. K.; Rietmeijer, F. J. M.; Gakin, R.; Lee, K.

2004-01-01

The catastrophic Chicxulub event should have generated a large hydrothermal system with volatile element mobilization, producing interesting alteration materials and clays. The Yaxcopoil-1 (YAX) drill hole is located in the annular trough, about 70 km southwest of the crater center, in an area where the impactite layers are relatively thin (approx. 100 m thick). We have analyzed samples from the YAX drill core and from other impact craters including Mistastin and Lonar to determine the nature of alteration and trace element mobilization.

Mapping of Ionomic Traits in Mimulus guttatus Reveals Mo and Cd QTLs That Colocalize with MOT1 Homologues

PubMed Central

Lowry, David B.; Sheng, Calvin C.; Zhu, Zhirui; Juenger, Thomas E.; Lahner, Brett; Salt, David E.; Willis, John H.

2012-01-01

Natural variation in the regulation of the accumulation of mineral nutrients and trace elements in plant tissues is crucial to plant metabolism, development, and survival across different habitats. Studies of the genetic basis of natural variation in nutrient metabolism have been facilitated by the development of ionomics. Ionomics is a functional genomic approach for the identification of the genes and gene networks that regulate the elemental composition, or ionome, of an organism. In this study, we evaluated the genetic basis of divergence in elemental composition between an inland annual and a coastal perennial accession of Mimulus guttatus using a recombinant inbred line (RIL) mapping population. Out of 20 elements evaluated, Mo and Cd were the most divergent in accumulation between the two accessions and were highly genetically correlated in the RILs across two replicated experiments. We discovered two major quantitative trait loci (QTL) for Mo accumulation, the largest of which consistently colocalized with a QTL for Cd accumulation. Interestingly, both Mo QTLs also colocalized with the two M. guttatus homologues of MOT1, the only known plant transporter to be involved in natural variation in molybdate uptake. PMID:22292026

INNULs: A novel design amplification strategy for retrotransposable elements for studying population variation.

PubMed

LaRue, Bobby L; Sinha, Sudhir K; Montgomery, Anne H; Thompson, Robyn; Klaskala, Lauren; Ge, Jianye; King, Jonathan; Turnbough, Meredith; Budowle, Bruce

2012-01-01

Retrotransposable elements (REs), consisting of long interspersed nuclear elements (LINEs) and short interspersed nuclear elements (SINEs), are a group of markers that can be useful for human identity testing. Until now, however, due to the inherent size difference (up to 6 kb in some instances) associated with insertion and null alleles (or INNULs), the use of REs for facilitated population studies has not been sought or practical. The size of the insertion elements (from a few hundred to several thousand bp) has proven to limit their utility as a marker because of the inefficient amplicon yield with PCR. A novel primer design now facilitates INNUL marker testing. A preliminary panel of single-locus markers was developed to evaluate the potential of typing these insertion elements. Nine INNULs (5 Alu and 4 LINEs) were typed in three major North American populations and analyzed for population genetic features. In addition, the variation of each marker among the sample populations provides insight of its potential use as individual identification or ancestral marker. INNUL markers were developed into fluorescently labeled single-loci PCR. Nine markers were developed with amplicons that were less than 180 bp in length, and, depending on the locus amplicons of the INNULs, alleles varied in size from 50 to 1 bp. This allele size is noteworthy because the insertion alleles of the 9 loci range in size from 297 to 6,195 bp. The allele distribution of the INNULs was assessed and analyzed in three major North American populations. Upon observation of the distribution of the alleles in three major North American populations, the markers generally met Hardy-Weinberg expectations, and there was little evidence of detectable levels of linkage disequilibrium. Due to varying distributions of the alleles in the major population groups tested, some of the markers might be better suited for use as an individual identification marker, while others are better suited for bio-ancestral studies. Using the primer design strategy described in our work, SINEs and (for the first time, to our knowledge) LINEs can be utilized as markers for studying population genetic variation that is more amenable to the limitations of the PCR technique. This study lays the foundation for future work of developing a multiplex panel of INNUL markers that can be used as a single-tube assay for human identity testing utilizing small amplicons (<180 bp), which could be useful for ancient or degraded forensic DNA samples. Copyright © 2012 S. Karger AG, Basel.

Magmatic Processes at Kilauea Volcano Revealed by the Puu Oo Eruption

NASA Astrophysics Data System (ADS)

Garcia, M. O.; Marske, J. P.; Pietruszka, A. P.; Rhodes, J. M.; Norman, M. D.; Eiler, J.

2008-12-01

The ongoing Puu Oo eruption (1983 to present) provides an unprecedented opportunity to probe the crustal and mantle magmatic processes beneath Kilauea volcano. Here we present Pb, Sr, Nd and O isotope ratios, major- and trace-element abundances, olivine compositions, and petrography data for Puu Oo lavas an compare them to the Kilauea historical record. Crustal processes are dominated by olivine fractionation and accumulation with minor clinopyroxene fractionation, and to a lesser extent and only periodically when eruption rates decrease, by crustal contamination. Systematic variations in Sr isotope ratios, incompatible trace element ratios, and MgO-normalized major elements document remarkable changes in parental magma compositions delivered to Puu Oo. Inflections in some trends correlate broadly with increasing intermediate depth earthquakes under the Kilauea's summit and to changes in eruption rate. Thus, volcanic events are influenced by melting and transport processes. One surprising feature is the systematic trend of Puu Oo rock compositions away from and beyond typical historical Kilauea compositions towards those of lavas from neighboring Mauna Loa volcano. The source for this component in Puu Oo lavas is a hybrid with about equal mixtures of historical Kilauea and Mauna Loa end members. The Puu Oo lava trend continues the cyclic pattern of compositional variation that extends back over 1000 years. Similar trends are also recorded on a coarser scale in HSDP lavas. These patterns of cyclic compositional variation are important for understanding melting processes in Hawaiian and other volcanoes.

Background levels of some major, trace, and rare earth elements in indigenous plant species growing in Norway and the influence of soil acidification, soil parent material, and seasonal variation on these levels.

PubMed

Gjengedal, Elin; Martinsen, Thomas; Steinnes, Eiliv

2015-06-01

Baseline levels of 43 elements, including major, trace, and rare earth elements (REEs) in several native plant species growing in boreal and alpine areas, are presented. Focus is placed on species metal levels at different soil conditions, temporal variations in plant tissue metal concentrations, and interspecies variation in metal concentrations. Vegetation samples were collected at Sogndal, a pristine site in western Norway, and at Risdalsheia, an acidified site in southernmost Norway. Metal concentrations in the different species sampled in western Norway are compared with relevant literature data from Norway, Finland, and northwest Russia, assumed to represent natural conditions. Except for aluminium (Al) and macronutrients, the levels of metals were generally lower in western Norway than in southern Norway and may be considered close to natural background levels. In southern Norway, the levels of cadmium (Cd) and lead (Pb) in particular appear to be affected by air pollution, either by direct atmospheric supply or through soil acidification. Levels of some elements show considerable variability between as well as within plant species. Calcium (Ca), magnesium (Mg), and potassium (K) are higher in most species at Sogndal compared to Risdalsheia, despite increased extractable concentrations in surface soil in the south, probably attributed to different buffer mechanisms in surface soil. Antagonism on plant uptake is suggested between Ca, Mg, and K on one hand and Al on the other. Tolerance among calcifuges to acid conditions and a particular ability to detoxify or avoid uptake of Al ions are noticeable for Vaccinium vitis-idaea.

Petrogenesis of voluminous mid-Tertiary ignimbrites of the Sierra Madre Occidental, Chihuahua, Mexico

NASA Astrophysics Data System (ADS)

Cameron, Maryellen; Bagby, William C.; Cameron, Kenneth L.

1980-10-01

The mid-Tertiary ignimbrites of the Sierra Madre Occidental of western Mexico constitute the largest continuous rhyolitic province in the world. The rhyolites appear to represent part of a continental magmatic arc that was emplaced when an eastward-dipping subduction zone was located beneath western Mexico. In the Batopilas region of the northern Sierra Madre Occidental the mid-Tertiary Upper Volcanic sequence is composed predominantly of rhyolitic ignimbrites, but volumetrically minor lava flows as mafic as basaltic andesite are also present. The basaltic andesite to rhyolite series is calc-alkalic and contains ˜1% K2O at 60% SiO2. Trace element abundances of a typical ignimbrite with 73% SiO2 are Sr ˜ 225 ppm, Rb ˜130 ppm, Y ˜32 ppm, Th ˜12 ppm, Zr ˜200 ppm, and Nb ˜15 ppm. The entire series plots as coherent and continuous trends on variation diagrams involving major and trace elements, and the trends are distinct from those of geographicallyassociated rocks of other suites. We interpret these and other geochemical variations to indicate that the rocks are comagmatic. Mineral chemistry, Sr isotopic data, and REE modelling support this interpretation. Least squares calculations show that the major element variations are consistent with formation of the basaltic andesite to rhyolite series by crystal fractionation of observed phenocryst phases in approximate modal proportions. In addition, calculations modelling the behavior of Sr with the incompatible trace element Th favor a fractional crystallization origin over a crustal anatexis origin for the rock series. The fractionating minerals included plagioclase (> 50%), and lesser amounts of Fe-Ti oxides, pyroxenes, and/or hornblende. The voluminous ignimbrites represent no more than 20% of the original mass of a mantle-derived mafic parental magma.

The chemical characteristics of ground water near Fairbanks, Alaska: A section in Geologic studies in Alaska by the U.S. Geological Survey, 1998

USGS Publications Warehouse

Farmer, G. Lang; Goldfarb, Richard J.; Lilly, Michael R.; Bolton, Bob; Meier, Allen L.; Sanzolone, Richard F.

2000-01-01

Major- and trace-element abundances, and Sr and Pb isotopic compositions, of ground waters in and near Fairbanks, Alaska, were determined to characterize their chemical characteristics and to assess the factors controlling variations in dissolved arsenic concentrations. Collected samples show majorelement (Ca>Mg>Na>K) and strontium and lead isotopic compositions characteristic of waters that have interacted with lithologies comprising the Fairbanks Schist. Dissolved arsenic concentrations are not highly correlated with the abundances of other major and trace elements in these waters; however, waters with high arsenic concentrations (5.4 to 450 parts per billion) tend to have relatively high concentrations of antimony (as much as 1.7 ppb). The correlation between arsenic and antimony suggests that both elements were derived from the oxidation of hypogene sulfide minerals (arsenopyrite) that originally formed within the Fairbanks Schist during hydrothermal activity associated with the emplacement of Cretaceous granitic rocks. Variations in measured arsenic concentrations are due, in part, to the variations in the original abundance of upgradient sulfide minerals from a given well or spring. However, speciation studies on the ground water containing the highest concentration of arsenic in this study (450 ppb) demonstrate that the arsenic occurs primarily in its reduced form (As(III)). In agreement with previous studies, we conclude that relatively reducing ground waters have the highest potential for high arsenic concentrations due to greater mobility of As(III) relative to its oxidized counterpart (As(V)). In light of this conclusion, additional studies are being undertaken to determine how seasonal variations in ground-water redox affect arsenic mobility

Age and whole rock glass compositions of proximal pyroclastics from the major explosive eruptions of Somma-Vesuvius: A review as a tool for distal tephrostratigraphy

NASA Astrophysics Data System (ADS)

Santacroce, Roberto; Cioni, Raffaello; Marianelli, Paola; Sbrana, Alessandro; Sulpizio, Roberto; Zanchetta, Giovanni; Donahue, Douglas J.; Joron, Jean Louis

2008-10-01

A review of compositional data of the major explosive eruptions of Vesuvius is presented, comparing compositions (major elements) of whole rock with glass shards from the proximal deposits, hopefully useful for long-distance correlation. A critical review of published and new geochronological data is also provided. All available 14C ages are calibrated to give calendar ages useful for the reconstruction of the volcanological evolution of the volcanic complex. The pyroclastic deposits of the four major Plinian eruptions (22,000 yr cal BP "Pomici di Base", 8900 yr cal BP "Mercato Pumice", 4300 yr cal BP "Avellino Pumice", and A.D. 79 "Pompeii Pumice") are widely dispersed and allow a four-folded, Plinian to Plinian, stratigraphic division: 1. B-M (between Pomici di Base and Mercato); 2. M-A (between Mercato and Avellino); 3. A-P (between Avellino and Pompeii); 4. P-XX (from the Pompeii Pumice to the last erupted products of the XXth century). Within each interval, the age, lithologic and compositional features of pyroclastic deposits of major eruptions, potentially useful for tephrostratigraphic purposes on distal areas, are briefly discussed. The Vesuvius rocks are mostly high Potassic products, widely variable in terms of their silica saturation. They form three groups, different for both composition and age: 1. slightly undersaturated, older than Mercato eruption; 2. mildly undersaturated, from Mercato to Pompeii eruptions; 3. highly undersaturated, younger than Pompeii eruption. For whole rock analyses, the peculiar variations in contents of some major and trace elements as well as different trends in element/element ratios, allow a clear, unequivocal, easy diagnosis of the group they belong. Glass analyses show large compositional overlap between different groups, but selected element vs. element plots are distinctive for the three groups. The comparative analysis of glass and whole rock major element compositions provides reliable geochemical criteria helping in the recognition, frequently not obvious, of distal products from the different single eruptions.

Trace element analyses of fluid-bearing diamonds from Jwaneng, Botswana

NASA Astrophysics Data System (ADS)

Schrauder, Marcus; Koeberl, Christian; Navon, Oded

1996-12-01

Fibrous diamonds from Botswana contain abundant micro-inclusions, which represent syngenetic mantle fluids under high pressure. The major element composition of the fluids within individual diamonds was found to be uniform, but a significant compositional variation exists between different diamond specimens. The composition of the fluids varies between a carbonatitic and a hydrous endmember. To constrain the composition of fluids in the mantle, the trace element contents of thirteen micro-inclusion-bearing fibrous diamonds from Botswana was studied using neutron activation analysis. The concentrations of incompatible elements (including K, Na, Br, Rb, Sr, Zr, Cs, Ba, Hf, Ta, Th, U, and the LREEs) in the fluids are higher than those of mantle-derived rocks and melt inclusions. The compatible elements (e.g., Cr, Co, Ni) have abundances that are similar to those of the primitive mantle. The concentrations of most trace elements decrease by a factor of two from the carbonate-rich fluids to the hydrous fluids. Several models may explain the observed elemental variations. Minerals in equilibrium with the fluid were most likely enriched in incompatible elements, which does not agree with derivation of the fluids by partial melting of common peridotites or eclogites. Fractional crystallization of a kimberlite-like magma at depth may yield carbonatitic fluids with low mg numbers (atomic ratio [Mg/(Mg+Fe)]) and high trace element contents. Fractionation of carbonates and additional phases (e.g., rutile, apatite, zircon) may, in general, explain the concentrations of incompatible elements in the fluids, which preferably partition into these phases. Alternatively, mixing of fluids with compositions similar to those of the two endmembers may explain the observed variation of the elemental contents. The fluids in fibrous diamonds might have equilibrated with mineral inclusions in eclogitic diamonds, while peridotitic diamonds do not show evidence of interaction with these fluids. The chemical composition of the fluids in fibrous diamonds indicates that, at p, T conditions that are characteristic for diamond formation, carbonatitic and hydrous fluids are efficient carriers of incompatible elements.

The Role of Snow and Ice in the Climate System

ScienceCinema

Barry, Roger G.

2017-12-09

Global snow and ice cover (the 'cryosphere') plays a major role in global climate and hydrology through a range of complex interactions and feedbacks, the best known of which is the ice - albedo feedback. Snow and ice cover undergo marked seasonal and long term changes in extent and thickness. The perennial elements - the major ice sheets and permafrost - play a role in present-day regional and local climate and hydrology, but the large seasonal variations in snow cover and sea ice are of importance on continental to hemispheric scales. The characteristics of these variations, especially in the Northern Hemisphere, and evidence for recent trends in snow and ice extent are discussed.

Integration of Experiments across Diverse Environments Identifies the Genetic Determinants of Variation in Sorghum bicolor Seed Element Composition.

PubMed

Shakoor, Nadia; Ziegler, Greg; Dilkes, Brian P; Brenton, Zachary; Boyles, Richard; Connolly, Erin L; Kresovich, Stephen; Baxter, Ivan

2016-04-01

Seedling establishment and seed nutritional quality require the sequestration of sufficient element nutrients. The identification of genes and alleles that modify element content in the grains of cereals, including sorghum (Sorghum bicolor), is fundamental to developing breeding and selection methods aimed at increasing bioavailable element content and improving crop growth. We have developed a high-throughput work flow for the simultaneous measurement of multiple elements in sorghum seeds. We measured seed element levels in the genotyped Sorghum Association Panel, representing all major cultivated sorghum races from diverse geographic and climatic regions, and mapped alleles contributing to seed element variation across three environments by genome-wide association. We observed significant phenotypic and genetic correlation between several elements across multiple years and diverse environments. The power of combining high-precision measurements with genome-wide association was demonstrated by implementing rank transformation and a multilocus mixed model to map alleles controlling 20 element traits, identifying 255 loci affecting the sorghum seed ionome. Sequence similarity to genes characterized in previous studies identified likely causative genes for the accumulation of zinc, manganese, nickel, calcium, and cadmium in sorghum seeds. In addition to strong candidates for these five elements, we provide a list of candidate loci for several other elements. Our approach enabled the identification of single-nucleotide polymorphisms in strong linkage disequilibrium with causative polymorphisms that can be evaluated in targeted selection strategies for plant breeding and improvement. © 2016 American Society of Plant Biologists. All Rights Reserved.

Boron and strontium isotope ratios and major/trace elements concentrations in tea leaves at four major tea growing gardens in Taiwan.

PubMed

Chang, Cheng-Ta; You, Chen-Feng; Aggarwal, Suresh Kumar; Chung, Chuan-Hsiung; Chao, Hung-Chun; Liu, Hou-Chun

2016-06-01

Isotopic compositions of B and Sr in rocks and sediments can be used as tracers for plant provincial sources. This study aims to test whether tea leaf origin can be discriminated using (10)B/(11)B and Sr isotopic composition data, along with concentrations of major/trace elements, in tea specimens collected from major plantation gardens in Taiwan. The tea leaves were digested by microwave and analyzed by multi-collector inductively coupled plasma mass spectrometry (MC-ICPMS). The data showed significant variations in (87)Sr/(86)Sr ratios (from 0.70482 to 0.71462), which reflect changes in soil, groundwater or irrigation conditions. The most radiogenic tea leaves were found at the Taitung garden and the least radiogenic ones were from the Hualien garden. The δ (11)B was found to change appreciably (δ (11)B = 0.38-23.73 ‰) which could be due to fertilizers. The maximum δ (11)B was also observed in tea samples from the Hualien garden. Principal component analysis combining (87)Sr/(86)Sr, δ (11)B and major/trace elements results successfully discriminated different sources of major tea gardens in Taiwan, except the Hualien gardens, and this may be due to rather complicated local geological settings.

Physicochemical characterization of raw materials and co-products from the titanium dioxide industry.

PubMed

Gázquez, M J; Bolívar, J P; García-Tenorio, R; Vaca, F

2009-07-30

The present study was conducted to characterize several raw materials and co-products from the titanium dioxide industry in relation to their elemental composition (major, minor and trace elements), granulometry, mineralogy, microscopic morphology and physical composition. The main objective was to gain basic information for the future potential application of these co-products in fields such as agriculture, construction, civil engineering, etc. Microscopic studies were performed by applying scanning electron microscopy with X-ray microanalysis (SEM-XRMA) while the mineralogical compositions were analysed by means of the X-ray diffraction (XRD) technique. The concentrations of major elements such as Na, Al, Si, Ca, Ti, Fe, S and K were determined by X-ray fluorescence (XRF), while heavy metals and other trace elements were determined by ICP-MS. The physicochemical characterization of the raw materials used in the titanium dioxide industry, in addition to the characterization of the co-products generated, has enabled the evaluation of the degree of fractionation of different elements and compounds between the different co-products, as well as the control of the possible variations in the physicochemical composition of the raw materials throughout the time and the study of the influence of these variations in the characteristics of the obtained co-products. As a main conclusion of our study, it is possible to indicate that the levels of the pollutant elements associated to the co-products analysed were, in general, within safe limits and, therefore, they could potentially be used in composites as fertilizers or for building materials in road construction, etc. Nevertheless, for the specific application of each of these co-products in agriculture, construction and civil engineering, additional studies need to be performed to evaluate their appropriateness for the proposed application, together with specific studies on their health and environmental impact.

Geochemical variations of rare earth elements in Marcellus shale flowback waters and multiple-source cores in the Appalachian Basin

NASA Astrophysics Data System (ADS)

Noack, C.; Jain, J.; Hakala, A.; Schroeder, K.; Dzombak, D. A.; Karamalidis, A.

2013-12-01

Rare earth elements (REE) - encompassing the naturally occurring lanthanides, yttrium, and scandium - are potential tracers for subsurface groundwater-brine flows and geochemical processes. Application of these elements as naturally occurring tracers during shale gas development is reliant on accurate quantitation of trace metals in hypersaline brines. We have modified and validated a liquid-liquid technique for extraction and pre-concentration of REE from saline produced waters from shale gas extraction wells with quantitative analysis by ICP-MS. This method was used to analyze time-series samples of Marcellus shale flowback and produced waters. Additionally, the total REE content of core samples of various strata throughout the Appalachian Basin were determined using HF/HNO3 digestion and ICP-MS analysis. A primary goal of the study is to elucidate systematic geochemical variations as a function of location or shale characteristics. Statistical testing will be performed to study temporal variability of inter-element relationships and explore associations between REE abundance and major solution chemistry. The results of these analyses and discussion of their significance will be presented.

Transport of particle-associated elements in two agriculture-dominated boreal river systems.

PubMed

Marttila, Hannu; Saarinen, Tuomas; Celebi, Ahmet; Kløve, Bjørn

2013-09-01

Transport of particulate pollutants in fluvial systems can contribute greatly to total loads. Understanding transport mechanics under different hydrological conditions is key in successful load estimation. This study analysed trace elements and physico-chemical parameters in time-integrated suspended sediment samples, together with dissolved and total concentrations of pollutants, along two agriculture- and peatland-dominated boreal river systems. The samples were taken in a spatially and temporally comprehensive sampling programme during the ice-free seasons of 2010 and 2011. The hydrochemistry and transport of particle-bound elements in the rivers were strongly linked to intense land use and acid sulphate soils in the catchment area, with arable, pasture and peat areas in particular being main diffuse sources. There were significant seasonal and temporal variations in dissolved and particulate fluxes, but spatial variations were small. Continuous measurements of EC, turbidity and discharge proved to be an accurate indicator of dissolved and particulate fluxes. Overall, the results show that transport of particle-bound elements makes a major contribution to total transport fluxes in agriculture-dominated boreal rivers. Copyright © 2013 Elsevier B.V. All rights reserved.

Particulate-phase mercury emissions from biomass burning and impact on resulting deposition: a modelling assessment

EPA Science Inventory

Mercury (Hg) emissions from biomass burning (BB) are an important source of atmospheric Hg and a major factor driving the interannual variation of Hg concentrations in the troposphere. The greatest fraction of Hg from BB is released in the form of elemental Hg (Hg0(g)). However, ...

SEASONAL VARIATION OF THE PARTICLE SIZE DISTRIBUTION OF POLYCYCLIC AROMATIC HYDROCARBONS AND OF MAJOR AEROSOL SPECIES IN CLAREMONT, CALIFORNIA. (R827352C020)

EPA Science Inventory

As part of the Southern California Particle Center and Supersite (SCPCS) activities, we measured, during all seasons, particle size distributions of 12 priority pollutant polycyclic aromatic hydrocarbons (PAHs), concurrently with elemental carbon (EC), organic carbon (OC), sul...

A transposable element in a NAC gene is associated with drought tolerance in maize seedlings

PubMed Central

Mao, Hude; Wang, Hongwei; Liu, Shengxue; Li, Zhigang; Yang, Xiaohong; Yan, Jianbing; Li, Jiansheng; Tran, Lam-Son Phan; Qin, Feng

2015-01-01

Drought represents a major constraint on maize production worldwide. Understanding the genetic basis for natural variation in drought tolerance of maize may facilitate efforts to improve this trait in cultivated germplasm. Here, using a genome-wide association study, we show that a miniature inverted-repeat transposable element (MITE) inserted in the promoter of a NAC gene (ZmNAC111) is significantly associated with natural variation in maize drought tolerance. The 82-bp MITE represses ZmNAC111 expression via RNA-directed DNA methylation and H3K9 dimethylation when heterologously expressed in Arabidopsis. Increasing ZmNAC111 expression in transgenic maize enhances drought tolerance at the seedling stage, improves water-use efficiency and induces upregulation of drought-responsive genes under water stress. The MITE insertion in the ZmNAC111 promoter appears to have occurred after maize domestication and spread among temperate germplasm. The identification of this MITE insertion provides insight into the genetic basis for natural variation in maize drought tolerance. PMID:26387805

Investigation of drinking water quality in Kosovo.

PubMed

Berisha, Fatlume; Goessler, Walter

2013-01-01

In the recent years, not much environmental monitoring has been conducted in the territory of Kosovo. This study represents the first comprehensive monitoring of the drinking water situation throughout most of the territory of Kosovo. We present the distribution of major and minor trace elements in drinking water samples from Kosovo. During our study we collected 951 samples from four different sources: private-bored wells; naturally flowing artesian water; pumped-drilled wells; and public water sources (tap water). The randomly selected drinking water samples were investigated by routine water analyses using inductively coupled plasma mass spectrometry (ICPMS) for 32 elements (Li, Be, B, Na, Mg, Al, K, Ca, V, Cr, Mn, Fe, Co, Ni, Cu, Zn, Ga, As, Rb, Sr, Mo, Ag, Cd, Sn, Sb, Te, Ba, Tl, Pb, Bi, Th, U). Even though there are set guidelines for elemental exposure in drinking water worldwide, in developing countries, such as Kosovo, the lack of monitoring drinking water continues to be an important health concern. This study reports the concentrations of major and minor elements in the drinking water in Kosovo. Additionally, we show the variation of the metal concentration within different sources. Of the 15 regulated elements, the following five elements: Mn, Fe, Al, Ni, As, and U were the elements which most often exceeded the guidelines set by the EU and/or WHO.

LA-ICP-MS trace element mapping: insights into the crystallisation history of a metamorphic garnet population

NASA Astrophysics Data System (ADS)

George, Freya; Gaidies, Fred

2017-04-01

In comparison to our understanding of major element zoning, relatively little is known about the incorporation of trace elements into metamorphic garnet. Given their extremely slow diffusivities and sensitivity to changing mineral assemblages, the analysis of the distribution of trace elements in garnet has the potential to yield a wealth of information pertaining to interfacial attachment mechanisms during garnet crystallisation, the mobility of trace elements in both garnet and the matrix, and trace element geochronology. Due to advances in the spatial resolution and analytical precision of modern microbeam techniques, small-scale trace element variations can increasingly be documented and used to inform models of metamorphic crystallisation. Laser ablation-inductively coupled plasma-mass spectrometry (LA-ICP-MS) in particular, can be used to rapidly quantify a wide range of elemental masses as a series of laser rasters, producing large volumes of spatially constrained trace element data. In this study, we present LA-ICP-MS maps of trace element concentrations from numerous centrally-sectioned garnets representative of the crystal size-distribution of a single sample's population. The study sample originates from the garnet-grade Barrovian zone of the Lesser Himalayan Sequence in Sikkim, northeast India, and has been shown to have crystallised garnet within a single assemblage between 515 ˚C and 565˚C, with no evidence for accessory phase reaction over the duration of garnet growth. Previous models have indicated that the duration of garnet crystallisation was extremely rapid (<1 Myr), with negligible diffusional homogenisation of major divalent cations. Consequently, the trace element record likely documents the primary zonation generated during garnet growth. In spite of straightforward (i.e. concentrically-zoned) major element garnet zonation, trace elements maps are characterised by significant complexity and variability. Y and the heavy rare earth elements are strongly enriched in crystal cores, where there is overprinting of the observed internal fabric, and exhibit numerous concentric annuli towards crystal rims. Conversely, the medium rare earth elements (e.g. Gd, Eu and Sm) exhibit bowl-shaped zoning from core to rim, with no annuli, and core and rim compositions of the medium rare earth elements are the same throughout the population within crystals of differing size. Cr exhibits pronounced spiral zoning, and the average Cr content increases towards garnet rims. In all cases, spirals are centered on the geometric core of the crystals. These LA-ICP-MS maps highlight the complexity of garnet growth over a single prograde event, and indicate that there is still much to be learnt from the analysis of garnet using ever-improving analytical methods. We explore the potential causes of the variations in the distribution of trace elements in garnet, and assess how these zoning patterns may be used to refine our understanding of the intricacies of garnet crystallisation and the spatial and temporal degree of trace element equilibration during metamorphism.

Chemical and mineralogical analysis of devonian black-shale samples from Martin County, Kentucky; Carroll and Washington counties, Ohio; Wise County, Virginia; and Overton County, Tennessee, U.S.A.

USGS Publications Warehouse

Leventhal, J.S.; Hosterman, J.W.

1982-01-01

Core samples of Devonian shales from five localities in the Appalachian basin have been analyzed chemically and mineralogically. The amounts of major elements are similar; however, the minor constituents, organic C, S, phosphate and carbonate show ten-fold variations in amounts. Trace elements Mo, Ni, Cu, V, Co, U, Zn, Hg, As and Mn show variations in amounts that can be related to the minor constituents. All samples contain major amounts of quartz, illite, two types of mixed-layer clays, and chlorite in differing quantities. Pyrite, calcite, feldspar and kaolinite are also present in many samples in minor amounts. Dolomite, apatite, gypsum, barite, biotite and marcasite are present in a few samples in trace amounts. Trace elements listed above are strongly controlled by organic C with the exception of Mn which is associated with carbonate minerals. Amounts of organic C generally range from 3 to 6%, and S is in the range of 2-5%. Amounts of trace elements show the following general ranges in ppm (parts per million): Co, 20-40; Cu, 40-70; U, 10-40; As, 20-40; V, 150-300; Ni, 80-150; high values are as much as twice these values. The organic C was probably the concentrating agent, and the organic C and sulfide S together created an environment that immobilized and preserved these trace elements. Closely spaced samples showing an abrupt transition in color also show changes in organic C, S and trace-element contents. Several associations exist between mineral and chemical content. Pyrite and marcasite are the only minerals found to contain sulfide-S. In general, the illite-chlorite mixed-layer clay mineral shows covariation with organic C if calcite is not present. The enriched trace elements are not related to the clay types, although the clay and organic matter are intimately associated as the bulk fabric of the rock. ?? 1982.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dupre, B.; Rousseau, D.; Gaillardet, J.

The Congo river Basin is the second largest drainage basin in the world, after the Amazon. The materials carried by its main rivers provide the opportunity to study the products of denudation of a large fraction of the upper continental crust of the African continent. This paper presents the chemical composition of the different phases carried in the Congo rivers and is followed by a companion paper, devoted to the modelling of major and trace elements. The Congo river between Bangui and Brazzaville as well as its main tributaries, including a few organic-rich rivers, also called Black Rivers, were sampledmore » during the 1989 high water stage. The three main phases (suspended load, dissolved load, and bedload) were analysed for twenty-five major and trace elements. Concentrations normalized to the upper continental crust show that in each river, suspended sediments and dissolved load are chemical complements for the most soluble elements (Ca, Na, Sr, K, Ba, Rb, and U). While these elements are enriched in the dissolved loads, they are considerably depleted in the corresponding suspended sediments. This is consistent with their high mobility during weathering. Another type of complementarity is observed for Zr and Hf between suspended sediments and bedload, related to the differential velocity of suspended sediments and zircons which are concentrated in bedloads. Compared to other rivers, absolute dissolved concentrations of Ca, Na, Sr, K, Ba, Rb, and U are remarkably low. Surprisingly, high dissolved concentrations are found in the Congo waters for other trace elements (e.g., REEs), especially in the Black rivers. On a world scale, these concentrations are among the highest measured in rivers and are shown to be pH dependent for a number of dissolved trace elements. The dissolved loads are systematically normalized to the suspended loads for each river, in order to remove the variations of the element abundances owing to source rock variations.« less

Atypicality of Most Few-Body Observables

NASA Astrophysics Data System (ADS)

Hamazaki, Ryusuke; Ueda, Masahito

2018-02-01

The eigenstate thermalization hypothesis (ETH), which dictates that all diagonal matrix elements within a small energy shell be almost equal, is a major candidate to explain thermalization in isolated quantum systems. According to the typicality argument, the maximum variations of such matrix elements should decrease exponentially with increasing the size of the system, which implies the ETH. We show, however, that the typicality argument does not apply to most few-body observables for few-body Hamiltonians when the width of the energy shell decreases at most polynomially with increasing the size of the system.

Investigating the Partitioning of Inorganic Elements Consumed by Humans between the Various Fractions of Human Wastes: An Alternative Approach

NASA Technical Reports Server (NTRS)

Wignarajah, Kanapathipillai; Pisharody, Suresh; Fisher, John W.

2003-01-01

The elemental composition of food consumed by astronauts is well defined. The major elements carbon, hydrogen, oxygen, nitrogen and sulfur are taken up in large amounts and these are often associated with the organic fraction (carbohydrates, proteins, fats etc) of human tissue. On the other hand, a number of the elements are located in the extracellular fluids and can be accounted for in the liquid and solid waste fraction of humans. These elements fall into three major categories - cationic macroelements (e.g. Ca, K, Na, Mg and Si), anionic macroelements (e.g. P, S and Cl and 17 essential microelements, (e.g. Fe, Mn, Cr, Co, Cu, Zn, Se and Sr). When provided in the recommended concentrations to an adult healthy human, these elements should not normally accumulate in humans and will eventually be excreted in the different human wastes. Knowledge of the partitioning of these elements between the different human waste fractions is important in understanding (a) developing waste separation technologies, (b) decision-making on how these elements can be recovered for reuse in space habitats, and (c) to developing the processors for waste management. Though considerable literature exists on these elements, there is a lack of understanding and often conflicting data. Two major reasons for these problems include the lack of controlled experimental protocols and the inherently large variations between human subjects (Parker and Gallagher, 1988). We have used the existing knowledge of human nutrition and waste from the available literature and NASA documentation to build towards a consensus to typify and chemically characterize the various human wastes. It is our belief, that this could be a building block towards integrating a human life support and waste processing in a closed system.

Chompy: an infestation of MITE-like repetitive elements in the crocodilian genome.

PubMed

Ray, David A; Hedges, Dale J; Herke, Scott W; Fowlkes, Justin D; Barnes, Erin W; LaVie, Daniel K; Goodwin, Lindsey M; Densmore, Llewellyn D; Batzer, Mark A

2005-12-05

Interspersed repeats are a major component of most eukaryotic genomes and have an impact on genome size and stability, but the repetitive element landscape of crocodilian genomes has not yet been fully investigated. In this report, we provide the first detailed characterization of an interspersed repeat element in any crocodilian genome. Chompy is a putative miniature inverted-repeat transposable element (MITE) family initially recovered from the genome of Alligator mississippiensis (American alligator) but also present in the genomes of Crocodylus moreletii (Morelet's crocodile) and Gavialis gangeticus (Indian gharial). The element has all of the hallmarks of MITEs including terminal inverted repeats, possible target site duplications, and a tendency to form secondary structures. We estimate the copy number in the alligator genome to be approximately 46,000 copies. As a result of their size and unique properties, Chompy elements may provide a useful source of genomic variation for crocodilian comparative genomics.

Comprehensive Identification Of Specific Genes Controlling Complex Traits Through A Genome-Wide Screen for Cis-Acting Regulatory Elements - An Example Using Marek's Disease

USDA-ARS?s Scientific Manuscript database

The comprehensive identification of genes underlying phenotypic variation of complex traits remains a major challenge. Most genome-wide screens lack sufficient resolving power as they typically depend on linkage. An alternate method is to screen for allele-specific expression (ASE), a simple yet pow...

Apollo 15 green glass - Compositional distribution and petrogenesis

NASA Technical Reports Server (NTRS)

Steele, Alison M.; Colson, Russell O.; Korotev, Randy L.; Haskin, Larry A.

1992-01-01

We have characterized a comprehensive suite of individual green-glass beads from Apollo 15 soil to determine interelement behavior and to constrain petrogenetic relationships. We analyzed 365 particles for trace elements by instrumental neutron activation analysis and analyzed 52 of them, selected to cover the compositional ranges observed for trace elements, for major elements by electron microprobe analysis. We confirm the observation of Delano (1979) that the beads comprise discrete compositional groups, although two of the groups he defined are further split on the basis of trace-element compositions. Each of the resulting seven groups has distinct average rare-earth abundances. The coherence between major- and trace-element data was masked in previous studies by imprecision, correlated error, and nonrepresentative sampling of the different groups. Most of the compositional characteristics of the green glasses can be explained by a model for batch equilibrium melting of a nearly homogeneous, ultramafic source region, when the complicating effects of high pressure and low oxygen fugacity are taken into account. The previously puzzling behavior of Ni and Co as apparently incompatible elements may arise from partial reduction of those elements to the zero oxidation state, resulting in low mineral/melt partition coefficients. The model also offers explanations for why the green glasses form boomerang-shaped trends on many two-element variation diagrams and why certain compositions (Groups A and D) are more abundant than glasses with other compositions.

The chemistry and origin of the ordinary chondrites Implications from refractory-lithophile and siderophile elements

NASA Technical Reports Server (NTRS)

Fulton, C. R.; Rhodes, J. M.

1984-01-01

Thirty-eight ordinary chondrites (17 H, 20 L, and 1 LL) have been analyzed for major and selected trace elements. These data indicate that the lithophile elements Mg, Ca, Al, Cr, and V normalized to Si are in higher abundance in the H than in the L chondrites. The siderophile elements Ni, Co, and Fe show very good correlation within, as well as between, the two major ordinary chondrite groups. Twenty-four of the analyses are of Antarctic finds, while ten are samples of falls. Comparing the Antarctic data with the fall data reveals no evidence that any of the elements studied here have been mobilized by terrestrial weathering processes. Within the H and L chondrite groups there is little chemical variation, indicating that the source of these samples is remarkably homogeneous. Equilibrium condensate fractionation from a nebula of CI composition can result in the observed ordinary chondrite compositions. The fractionation of metal at about 1440 K (and 0.001 atm) into high and low iron groups, followed by a gas-solid fractionation at about 1380 K with the H group losing more solids than the L, will produce the observed H and L compositions and intragroup trends.

Trace element geochemistry and mineralogy of coal from Samaleswari open cast coal block (S-OCB), Eastern India

NASA Astrophysics Data System (ADS)

Saha, Debasree; Chatterjee, Debashis; Chakravarty, Sanchita; Mazumder, Madhurina

2018-04-01

Coal samples of Samaleswari open cast coal block (S-OCB) are high ash (Aad, mean value 35.43%) and low sulphur content (St, on dry basis, mean value 0.91% < 1%) in quality. The stratigraphic variation of volatile matter and fixed carbon (dry ash-free) reflect a progress of coal metamorphism with depth that accordance to the coal rank variation from lignite to high volatile bituminous in the studied borehole. The younger coal seams have greater detrital minerals (quartz, illite, rutile) influence whereas older coal seams have greater authigenic mineral (kaolinite, dolomite, siderite, apatite) contribution that are possibly due to subsidence and sediment transportation. In S-OCB coal trace elements affinities in-between mineral and organic fraction are identified with statistical hierarchical cluster analysis. The work is further supported by the use of chemical fractionation experiment that reveals the multi mode of occurrence of several environmentally concern and interested trace elements (Sb, As, Be, Cd, Cr, Co, Cu, Pb, Mn, Ni, Zn). Among the analysed trace elements Co, Mn and Zn have major silicate association along with significant carbonate/oxide/monosulfide association. Whereas As, Cd, Cu, Pb and Ni have dominant pyritic association with notable silicate and carbonate/oxide/monosulfide association. The rest three elements (Sb, Be, Cr) have principally organic association with minor silicate and carbonate/oxide/monosulfide association. The stratigraphic variation of organo-mineral matrix content and detrital-authigenic mineral ratio are primarily related to coal rank. Geochemical character of coal also reflects a light towards proper utilisation of S-OCB coal from technical and environmental view point.

Natural variation of H3K27me3 distribution between two Arabidopsis accessions and its association with flanking transposable elements

PubMed Central

2012-01-01

Background Histone H3 lysine 27 tri-methylation and lysine 9 di-methylation are independent repressive chromatin modifications in Arabidopsis thaliana. H3K27me3 is established and maintained by Polycomb repressive complexes whereas H3K9me2 is catalyzed by SUVH histone methyltransferases. Both modifications can spread to flanking regions after initialization and were shown to be mutually exclusive in Arabidopsis. Results We analyzed the extent of natural variation of H3K27me3 in the two accessions Landsberg erecta (Ler) and Columbia (Col) and their F1 hybrids. The majority of H3K27me3 target genes in Col were unchanged in Ler and F1 hybrids. A small number of Ler-specific targets were detected and confirmed. Consistent with a cis-regulatory mechanism for establishing H3K27me3, differential targets showed allele-specific H3K27me3 in hybrids. Five Ler-specific targets showed the active mark H3K4me3 in Col and for this group, differential H3K27me3 enrichment accorded to expression variation. On the other hand, the majority of Ler-specific targets were not expressed in Col, Ler or 17 other accessions. Instead of H3K27me3, the antagonistic mark H3K9me2 and other heterochromatic features were observed at these loci in Col. These loci were frequently flanked by transposable elements, which were often missing in the Ler genome assembly. Conclusion There is little variation in H3K27me3 occupancy within the species, although H3K27me3 targets were previously shown as overrepresented among differentially expressed genes. The existing variation in H3K27me3 seems mostly explained by flanking polymorphic transposable elements. These could nucleate heterochromatin, which then spreads into neighboring H3K27me3 genes, thus converting them to H3K9me2 targets. PMID:23253144

Major, Trace, and Volatile (CO2, H2O, S, F, and Cl) Elements from 1000+ Hawaiian Olivine-hosted Melt Inclusions Reveal the Dynamics of Crustal Recycling

NASA Astrophysics Data System (ADS)

Marske, J. P.; Hauri, E. H.; Trusdell, F.; Garcia, M. O.; Pietruszka, A. J.

2015-12-01

Global cycling of volatile elements (H2O, CO2, F, S, Cl) via subduction to deep mantle followed by entrainment and melting within ascending mantle plumes is an enigmatic process that controls key aspects of hot spot volcanism (i.e. melting rate, magma supply, degassing, eruptive style). Variations in radiogenic isotope ratios (e.g.187Os/188Os) at hot spots such as Hawaii reveal magmatic processes within deep-seated mantle plumes (e.g. mantle heterogeneity, lithology, and melt transport). Shield-stage lavas from Hawaii likely originate from a mixed plume source containing peridotite and recycled oceanic crust (pyroxenite) based on variations of radiogenic isotopes. Hawaiian lavas display correlations among isotopes, major and trace elements [1] that might be expected to have an expression in the volatile elements. To investigate this link, we present Os isotopic ratios (n=51), and major, trace, and volatile elements from 1003 olivine-hosted melt inclusions (MI) and their host minerals from tephra from Koolau, Mauna Loa, Hualalai, Kilauea, and Loihi volcanoes. The data show a strong correlation between MI volatile contents and incompatible trace element ratios (La/Yb) with Os isotopes of the same host olivines and reveal large-scale volatile heterogeneity and zonation exists within the Hawaiian plume. 'Loa' chain lavas, which are thought to originate from greater proportions of recycled oceanic crust/pyroxenite, have MIs with lower H2O, S, F, and Cl contents compared to 'Kea' chain lavas that were derived from more peridotite-rich sources. The depletion of volatile elements in the 'Loa' volcano MIs can be explained if they tapped an ancient dehydrated oceanic crust component within the Hawaiian plume. Higher extents of melting beneath 'Loa' volcanoes can also explain these depletions. The presence of dehydrated recycled mafic material in the plume source suggests that subduction effectively devolatilizes part of the oceanic crust. These results are similar to the observed shifts in H2O/Ce ratios near the Easter and Samoan hotspots [2,3]. Thus, it appears that multiple hotspots may record relative H2O depletions and possibly other volatiles. [1] Hauri et al. 1996, Nature 382, 415-419. [2] Dixon et al. 2002, Nature 420:385-89 [3] Workman et al. 2006, EPSL 241:932-51.

An assumed-stress hybrid 4-node shell element with drilling degrees of freedom

NASA Technical Reports Server (NTRS)

Aminpour, M. A.

1992-01-01

An assumed-stress hybrid/mixed 4-node quadrilateral shell element is introduced that alleviates most of the deficiencies associated with such elements. The formulation of the element is based on the assumed-stress hybrid/mixed method using the Hellinger-Reissner variational principle. The membrane part of the element has 12 degrees of freedom including rotational or 'drilling' degrees of freedom at the nodes. The bending part of the element also has 12 degrees of freedom. The bending part of the element uses the Reissner-Mindlin plate theory which takes into account the transverse shear contributions. The element formulation is derived from an 8-node isoparametric element by expressing the midside displacement degrees of freedom in terms of displacement and rotational degrees of freedom at corner nodes. The element passes the patch test, is nearly insensitive to mesh distortion, does not 'lock', possesses the desirable invariance properties, has no hidden spurious modes, and for the majority of test cases used in this paper produces more accurate results than the other elements employed herein for comparison.

Transition Element Abundances in MORB Basalts

NASA Astrophysics Data System (ADS)

Yang, S.; Humayun, M.; Salters, V. J.; Fields, D.; Jefferson, G.; Perfit, M. R.

2012-12-01

The mineralogy of the mantle sources of basalts is an important, but hard to constrain parameter, especially with the basalts as chemical probes of major element mantle composition. Geophysical models imply that the deep mantle may have significant variations in Fe and Si relative to the ambient mantle sampled by MORB. Some petrological models of sub-ridge melting involve both pyroxenite and peridotite, implying that basalts preferentially sample a pyroxenite endmember. The First-Row Transition Elements (FRTE), Ga and Ge are compatible to moderately incompatible during partial melting, and are sensitive to mineralogical variability in the mantle and thus can provide constraints on mantle source mineralogy for MORB. We have analyzed major elements, FRTE, Ga and Ge on 231 basaltic glasses from the Middle Atlantic Ridge (MAR between -23°S to 36.44°N), 30 Mid-Cayman Rise basaltic glasses, 12 glasses from the Siqueiros Fracture Zone (EPR), 9 glasses from the Blanco Trough, Juan de Fuca ridge, and Galapagos Spreading Centers (EPR), and 4 Indian Ocean MORB. Large spots (150 μm) were precisely (±1%) analyzed by a New Wave UP193FX excimer (193 nm) laser ablation system coupled to a high-resolution ICP-MS at the National High Magnetic Field Laboratory using a high ablation rate (50 Hz) to yield blank contributions <1% for all elements, particularly Ge. The data demonstrate that the Ge/Si (6.96 x 10E-6 ± 3%, 1σ) and Fe/Mn (55 ± 2%) ratios for MORB are insensitive to fractional crystallization within the MgO range 6%-10%. MORB have Zn/Fe (9.9 x 10E-4 ± 7%), Ga/Sc (0.37-0.50), Ga/Al (2.2 x 10E-4 ± 11%) ratios, with the variations mostly due to the effects of fractional crystallization. Recent experimental determination of FRTE, Ga and Ge partition coefficients provide a framework within which to interpret these data [1]. Using these new partition coefficients, we have modeled the sensitivity of each element to mineralogical variations in the mantle source. Olivine primarily controls the partitioning of Fe, Zn, Ga and Ge; garnet dominates the Sc abundance; spinel exerts exceptionally strong control over Ga and Zn, and cannot be neglected as a source mineral for these elements. MORB FRTE, Ga and Ge abundances are consistent with partial melting of a spinel peridotite source (<1% garnet) similar to that estimated for DMM, although the abundances of many of these elements need to be better constrained in the model sources. [1] Davis et al. GCA (submitted)

No evidence that sex and transposable elements drive genome size variation in evening primroses.

PubMed

Ågren, J Arvid; Greiner, Stephan; Johnson, Marc T J; Wright, Stephen I

2015-04-01

Genome size varies dramatically across species, but despite an abundance of attention there is little agreement on the relative contributions of selective and neutral processes in governing this variation. The rate of sex can potentially play an important role in genome size evolution because of its effect on the efficacy of selection and transmission of transposable elements (TEs). Here, we used a phylogenetic comparative approach and whole genome sequencing to investigate the contribution of sex and TE content to genome size variation in the evening primrose (Oenothera) genus. We determined genome size using flow cytometry for 30 species that vary in genetic system and find that variation in sexual/asexual reproduction cannot explain the almost twofold variation in genome size. Moreover, using whole genome sequences of three species of varying genome sizes and reproductive system, we found that genome size was not associated with TE abundance; instead the larger genomes had a higher abundance of simple sequence repeats. Although it has long been clear that sexual reproduction may affect various aspects of genome evolution in general and TE evolution in particular, it does not appear to have played a major role in genome size evolution in the evening primroses. © 2015 The Author(s).

Major, trace element and isotope geochemistry (Sr-Nd-Pb) of interplinian magmas from Mt. Somma-Vesuvius (Southern Italy)

USGS Publications Warehouse

Somma, R.; Ayuso, R.A.; de Vivo, B.; Rolandi, G.

2001-01-01

Major, trace element and isotopic (Sr, Nd, Pb) data are reported for representative samples of interplinian (Protohistoric, Ancient Historic and Medieval Formations) activity of Mt. Somma-Vesuvius volcano during the last 3500 years. Tephra and lavas exhibit significant major, trace element and isotopic variations. Integration of these data with those obtained by previous studies on the older Somma suites and on the latest activity, allows to better trace a complete petrological and geochemical evolution of the Mt. Somma-Vesuvius magmatism. Three main groups of rocks are recognized. A first group is older than 12.000 yrs, and includes effusive-explosive activity of Mt. Somma. The second group (8000-2700 yrs B.P.) includes the products emitted by the Ottaviano (8000 yrs. B.P.) and Avellino (3550 yrs B.P.) plinian eruptions and the interplinian activity associated with the Protohistoric Formation. Ancient Historic Formation (79-472 A.D.), Medieval Formation (472-1139 A.D.) and Recent interplinian activity (1631-1944 A.D.) belong to the third group of activity (79-1944 A.D.). The three groups of rocks display distinct positive trends of alkalis vs. silica, which become increasingly steeper with age. In the first group there is an increase in silica and alkalis with time, whereas an opposite tendency is observed in the two younger groups. Systematic variations are also evident among the incompatible (Pb, Zr, Hf, Ta, Th, U, Nb, Rb, Cs, Ba) and compatible elements (Sr, Co, Cr). REE document variable degrees of fractionation, with recent activity displaying higher La/Yb ratios than Medieval and Ancient Historic products with the same degree of evolution. N-MORB normalized multi-element diagrams for interplinian rocks show enrichment in Rb, Th, Nb, Zr and Sm (> *10 N-MORB). Sr isotope ratios are variable, with Protohistoric rocks displaying 87Sr/86Sr= 0.70711-0.70810, Ancient Historic 87Sr/86Sr=0.70665-0.70729, and Medieval 87Sr/86Sr=0.70685-0.70803. Neodymium isotopic compositions in the interplinian rocks show a tendency to become slightly more radiogenic with age, from the Protohistoric (143Nd/144Nd=0.51240-0.51247) to Ancient Historic (143Nd/144Nd=0.51245-0.51251). Medieval interplinian activity (143Nd/144Nd: 0.51250-0.51241) lacks meaningful internal trends. All the interplinian rocks have virtually homogeneous compositions of 207Pb/204Pb and 208Pb/204Pb in acid-leached residues (207Pb/204Pb ???15.633 to 15.687, 208Pb/204Pb ???38.947 to 39.181). Values of 206Pb/204Pb are very distinctive, however, and discriminate among the three interplinian cycles of activity (Protohistoric: 18.929-18.971, Ancient Historic: 19.018-19.088, Medieval: 18.964-19.053). Compositional trends of major, trace element and isotopic compositions clearly demonstrate strong temporal variations of the magma types feeding the Somma-Vesuvius activity. These different trends are unlikely to be related only to low pressure evolutionary processes, and reveal variations of parental melt composition. Geochemical data suggest a three component mixing scheme for the interplinian activity. These involve HIMU-type and DMM-type mantle and Calabrian-type lower crust. Interaction between these components has taken place in the source; however, additional quantitative constraints must be acquired in order to better discriminate between magma characteristics inherited from the sources and those acquired during shallow level evolution.

Quantitative analysis of gallstones using laser-induced breakdown spectroscopy

DOE Office of Scientific and Technical Information (OSTI.GOV)

Singh, Vivek K.; Singh, Vinita; Rai, Awadhesh K.

2008-11-01

The utility of laser-induced breakdown spectroscopy (LIBS) for categorizing different types of gallbladder stone has been demonstrated by analyzing their major and minor constituents. LIBS spectra of three types of gallstone have been recorded in the 200-900 nm spectral region. Calcium is found to be the major element in all types of gallbladder stone. The spectrophotometric method has been used to classify the stones. A calibration-free LIBS method has been used for the quantitative analysis of metal elements, and the results have been compared with those obtained from inductively coupled plasma atomic emission spectroscopy (ICP-AES) measurements. The single-shot LIBS spectramore » from different points on the cross section (in steps of 0.5 mm from one end to the other) of gallstones have also been recorded to study the variation of constituents from the center to the surface. The presence of different metal elements and their possible role in gallstone formation is discussed.« less

Seasonal variations and environmental risk assessment of trace elements in the sediments of Uppanar River estuary, southern India.

PubMed

Gopal, V; Nithya, B; Magesh, N S; Jayaprakash, M

2018-04-01

Twenty four surface sediments were gathered from the Uppanar river estuary, southern India to evaluate the trace element contamination risk in the sediments. The circulation of organic matter and calcium carbonate were controlled by algal blooms and shell fragments. Moreover, the concentrations of iron and manganese in the estuarine sediments were possibly contributed by riverine sources and geogenic processes. The geoaccumulation index, enrichment factor and contamination factor reveals that the sediments were contaminated by copper and chromium. The pollution load index recommends that the estuarine sediments have the risk of pollution. The sediment pollution index highlights that the majority of the sediments are low polluted sediments. The potential ecological risk index discloses that the Uppanar river estuary is under moderate risk. The statistical analysis reveals that the organic matter content is managed by fine fractions and the majority of the trace elements are associated with each other having similar origin. Copyright © 2018 Elsevier Ltd. All rights reserved.

Finding One's Path into Another Language: On the Expression of Boundary Crossing by English Learners of French

ERIC Educational Resources Information Center

Hendriks, Henriette; Hickmann, Maya

2015-01-01

Languages vary considerably in how they represent motion. One major source of variation (Talmy, 2000) depends on whether linguistic systems lexicalize path in the verb (verb-framed languages) or in satellites (satellite-framed languages). This typological difference involves more than different verb types in that it also affects elements outside…

Investigation of Drinking Water Quality in Kosovo

PubMed Central

Berisha, Fatlume; Goessler, Walter

2013-01-01

In the recent years, not much environmental monitoring has been conducted in the territory of Kosovo. This study represents the first comprehensive monitoring of the drinking water situation throughout most of the territory of Kosovo. We present the distribution of major and minor trace elements in drinking water samples from Kosovo. During our study we collected 951 samples from four different sources: private-bored wells; naturally flowing artesian water; pumped-drilled wells; and public water sources (tap water). The randomly selected drinking water samples were investigated by routine water analyses using inductively coupled plasma mass spectrometry (ICPMS) for 32 elements (Li, Be, B, Na, Mg, Al, K, Ca, V, Cr, Mn, Fe, Co, Ni, Cu, Zn, Ga, As, Rb, Sr, Mo, Ag, Cd, Sn, Sb, Te, Ba, Tl, Pb, Bi, Th, U). Even though there are set guidelines for elemental exposure in drinking water worldwide, in developing countries, such as Kosovo, the lack of monitoring drinking water continues to be an important health concern. This study reports the concentrations of major and minor elements in the drinking water in Kosovo. Additionally, we show the variation of the metal concentration within different sources. Of the 15 regulated elements, the following five elements: Mn, Fe, Al, Ni, As, and U were the elements which most often exceeded the guidelines set by the EU and/or WHO. PMID:23509472

Temperature and composition dependencies of trace element partitioning - Olivine/melt and low-Ca pyroxene/melt

NASA Technical Reports Server (NTRS)

Colson, R. O.; Mckay, G. A.; Taylor, L. A.

1988-01-01

This paper presents a systematic thermodynamic analysis of the effects of temperature and composition on olivine/melt and low-Ca pyroxene/melt partitioning. Experiments were conducted in several synthetic basalts with a wide range of Fe/Mg, determining partition coefficients for Eu, Ca, Mn, Fe, Ni, Sm, Cd, Y, Yb, Sc, Al, Zr, and Ti and modeling accurately the changes in free energy for trace element exchange between crystal and melt as functions of the trace element size and charge. On the basis of this model, partition coefficients for olivine/melt and low-Ca pyroxene/melt can be predicted for a wide range of elements over a variety of basaltic bulk compositions and temperatures. Moreover, variations in partition coeffeicients during crystallization or melting can be modeled on the basis of changes in temperature and major element chemistry.

The Martian Soil as a Geochemical Sink for Hydrothermally Altered Crustal Rocks and Mobile Elements: Implications of Early MER Results

NASA Technical Reports Server (NTRS)

Newsom, H. E.; Nelson, M. J.; Shearer, C. K.; Draper, D. S.

2005-01-01

Hydrothermal and aqueous alteration can explain some of the exciting results from the MER team s analyses of the martian soil, including the major elements, mobile elements, and the nickel enrichment. Published results from the five lander missions lead to the following conclusions: 1) The soil appears to be globally mixed and basaltic with only small local variations in chemistry. Relative to martian basaltic meteorites and Gusev rocks the soils are depleted in the fluid-mobile element calcium, but only slightly enriched to somewhat depleted in iron oxide. 2) The presence of olivine in the soils based on M ssbauer data argues that the soil is only partly weathered and is more akin to a lunar regolith than a terrestrial soil. 3) The presence of bromine along with sulfur and chlorine in the soils is consistent with addition of a mobile element component to the soil.

The binary Asteroid 22 Kalliope: Linus orbit determination on the basis of speckle interferometric observations

NASA Astrophysics Data System (ADS)

Sokova, I. A.; Sokov, E. N.; Roschina, E. A.; Rastegaev, D. A.; Kiselev, A. A.; Balega, Yu. Yu.; Gorshanov, D. L.; Malogolovets, E. V.; Dyachenko, V. V.; Maksimov, A. F.

2014-07-01

In this paper we present the orbital elements of Linus satellite of 22 Kalliope asteroid. Orbital element determination is based on the speckle interferometry data obtained with the 6-m BTA telescope operated by SAO RAS. We processed 9 accurate positions of Linus orbiting around the main component of 22 Kalliope between 10 and 16 December, 2011. In order to determine the orbital elements of the Linus we have applied the direct geometric method. The formal errors are about 5 mas. This accuracy makes it possible to study the variations of the Linus orbital elements influenced by different perturbations over the course of time. Estimates of six classical orbital elements, such as the semi-major axis of the Linus orbit a = 1109 ± 6 km, eccentricity e = 0.016 ± 0.004, inclination i = 101° ± 1° to the ecliptic plane and others, are presented in this work.

Geochemical fingerprinting and source discrimination in soils at the continental scale

NASA Astrophysics Data System (ADS)

Negrel, Philippe; Sadeghi, Martiya; Ladenberger, Anna; Birke, Manfred; Reimann, Clemens

2014-05-01

Agricultural soil (Ap-horizon, 0-20 cm) samples were collected from a large part of Europe (33 countries, 5.6 million km2) at an average density of 1 sample site per 2500 km2. The resulting 2108 soil samples were air dried, sieved to <2 mm, milled and analysed for their major and trace element concentrations by wavelength dispersive X-ray fluorescence spectrometry (WD-XRF). The main goal of this study is to provide a global view of element mobility and source rocks at the continent scale, either by reference to crustal evolution or normalized patterns of element mobility during weathering processes. The survey area includes several sedimentary basins with different geological history, developed in different climate zones and landscapes and with different land use. In order to normalize the chemical composition of soils, mean values and standard deviation of the selected elements have been checked against values for the upper continental crust (UCC). Some elements turned out to be enriched relative to the UCC (Al, P, Zr, Pb) whereas others, like Mg, Na, Sr and Pb were depleted with regards to the variation represented by the standard deviation. The concept of UCC extended normalization patterns have been further used for the selected elements. The mean value of Rb, K, Y, Ti, Al, Si, Zr, Ce and Fe are very close to the UCC model even if standard deviation suggests slight enrichment or depletion, and Zr shows the best fit with the UCC model using both mean value and standard deviation. Lead and Cr are enriched in European soils when compared to UCC but their standard deviation values show very large variations, particularly towards very low values, which can be interpreted as a lithological effect. Element variability has been explored by looking at the variations using indicator elements. Soil data have been converted into Al-normalized enrichment factors and Na was applied as normalizing element for studying provenance source taking into account the main lithologies of the UCC. This latter normalization highlighted variations related to the soluble and insoluble behavior of some elements (K, Rb versus Ti, Al, Si, V, Y, Zr, Ba, and La, respectively), their reactivity (Fe, Mn, Zn), association with carbonates (Ca and Sr) and with phosphates (P and Ce). The maps of normalized composition revealed some problems with use of classical element ratios due to genetical differences in composition of parent material reflected, for example, in large differences in titanium content in bedrock and soil throughout the Europe.

Surface chemical composition of human maxillary first premolar as assessed by X-ray photoelectron spectroscopy (XPS)

NASA Astrophysics Data System (ADS)

Lou, Leo; Nelson, Alan E.; Heo, Giseon; Major, Paul W.

2008-08-01

The surface chemical composition of dental enamel has been postulated as a contributing factor in the variation of bond strength of brackets bonded to teeth, and hence, the probability of bracket failure during orthodontic treatment. This study systematically investigated the chemical composition of 98 bonding surfaces of human maxillary premolars using X-ray photoelectron spectroscopy (XPS) to ascertain compositional differences between right and left first premolars. The major elements detected in all samples were calcium, phosphorus, oxygen, nitrogen and carbon. Surface compositions were highly variable between samples and several elements were found to be highly correlated. No statistical significant difference in the chemical composition of the maxillary right and left first premolars was found ( p > 0.05). Knowledge of the chemical composition of enamel surfaces will facilitate future studies that relate this information to the variations in dental enamel bond strength.

Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gordon, Sean P.; Contreras-Moreira, Bruno; Woods, Daniel P.

While prokaryotic pan-genomes have been shown to contain many more genes than any individual organism, the prevalence and functional significance of differentially present genes in eukaryotes remains poorly understood. Whole-genome de novo assembly and annotation of 54 lines of the grass Brachypodium distachyon yield a pan-genome containing nearly twice the number of genes found in any individual genome. Genes present in all lines are enriched for essential biological functions, while genes present in only some lines are enriched for conditionally beneficial functions (e.g., defense and development), display faster evolutionary rates, lie closer to transposable elements and are less likely tomore » be syntenic with orthologous genes in other grasses. Our data suggest that differentially present genes contribute substantially to phenotypic variation within a eukaryote species, these genes have a major influence in population genetics, and transposable elements play a key role in pan-genome evolution.« less

Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure.

PubMed

Gordon, Sean P; Contreras-Moreira, Bruno; Woods, Daniel P; Des Marais, David L; Burgess, Diane; Shu, Shengqiang; Stritt, Christoph; Roulin, Anne C; Schackwitz, Wendy; Tyler, Ludmila; Martin, Joel; Lipzen, Anna; Dochy, Niklas; Phillips, Jeremy; Barry, Kerrie; Geuten, Koen; Budak, Hikmet; Juenger, Thomas E; Amasino, Richard; Caicedo, Ana L; Goodstein, David; Davidson, Patrick; Mur, Luis A J; Figueroa, Melania; Freeling, Michael; Catalan, Pilar; Vogel, John P

2017-12-19

While prokaryotic pan-genomes have been shown to contain many more genes than any individual organism, the prevalence and functional significance of differentially present genes in eukaryotes remains poorly understood. Whole-genome de novo assembly and annotation of 54 lines of the grass Brachypodium distachyon yield a pan-genome containing nearly twice the number of genes found in any individual genome. Genes present in all lines are enriched for essential biological functions, while genes present in only some lines are enriched for conditionally beneficial functions (e.g., defense and development), display faster evolutionary rates, lie closer to transposable elements and are less likely to be syntenic with orthologous genes in other grasses. Our data suggest that differentially present genes contribute substantially to phenotypic variation within a eukaryote species, these genes have a major influence in population genetics, and transposable elements play a key role in pan-genome evolution.

Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure

DOE PAGES

Gordon, Sean P.; Contreras-Moreira, Bruno; Woods, Daniel P.; ...

2017-12-19

While prokaryotic pan-genomes have been shown to contain many more genes than any individual organism, the prevalence and functional significance of differentially present genes in eukaryotes remains poorly understood. Whole-genome de novo assembly and annotation of 54 lines of the grass Brachypodium distachyon yield a pan-genome containing nearly twice the number of genes found in any individual genome. Genes present in all lines are enriched for essential biological functions, while genes present in only some lines are enriched for conditionally beneficial functions (e.g., defense and development), display faster evolutionary rates, lie closer to transposable elements and are less likely tomore » be syntenic with orthologous genes in other grasses. Our data suggest that differentially present genes contribute substantially to phenotypic variation within a eukaryote species, these genes have a major influence in population genetics, and transposable elements play a key role in pan-genome evolution.« less

Screening of MITF and SOX10 regulatory regions in Waardenburg syndrome type 2.

PubMed

Baral, Viviane; Chaoui, Asma; Watanabe, Yuli; Goossens, Michel; Attie-Bitach, Tania; Marlin, Sandrine; Pingault, Veronique; Bondurand, Nadege

2012-01-01

Waardenburg syndrome (WS) is a rare auditory-pigmentary disorder that exhibits varying combinations of sensorineural hearing loss and pigmentation defects. Four subtypes are clinically defined based on the presence or absence of additional symptoms. WS type 2 (WS2) can result from mutations within the MITF or SOX10 genes; however, 70% of WS2 cases remain unexplained at the molecular level, suggesting that other genes might be involved and/or that mutations within the known genes escaped previous screenings. The recent identification of a deletion encompassing three of the SOX10 regulatory elements in a patient presenting with another WS subtype, WS4, defined by its association with Hirschsprung disease, led us to search for deletions and point mutations within the MITF and SOX10 regulatory elements in 28 yet unexplained WS2 cases. Two nucleotide variations were identified: one in close proximity to the MITF distal enhancer (MDE) and one within the U1 SOX10 enhancer. Functional analyses argued against a pathogenic effect of these variations, suggesting that mutations within regulatory elements of WS genes are not a major cause of this neurocristopathy.

Laser ablation ICP-MS applications using the timescales of geologic and biologic processes

NASA Astrophysics Data System (ADS)

Ridley, W. I.

2003-04-01

Geochemists commonly examine geologic processes on timescales of 10^4--10^9 years, and accept that often age relations, e.g., chemical zoning in minerals, can only be measured in a relative sense. The progression of a geologic process that involves geochemical changes may be assessed using trace element microbeam techniques, because the textural, and therefore spatial context, of the analytical scheme can be preserved. However, quantification requires appropriate calibration standards. Laser ablation ICP-MS (LA-ICP-MS) is proving particularly useful now that appropriate standards are becoming available. For instance, trace element zoning patterns in primary sulfides (e.g., pyrite, sphalerite, chalcopyrite, galena) and secondary phases can be inverted to examine relative changes in fluid composition during cycles of hydrothermal mineralization. In turn such information provides insights into fluid sources, migration pathways and depositional processes. These studies have only become possible with the development of appropriate sulfide calibration standards. Another example, made possible with the development of appropriate silicate calibration standards, is the quantitative spatial mapping of REE variations in amphibolite-grade garnets. The recognition that the trace and major elements are decoupled provides a better understanding of the various sources of elements during metamorphic re-equilibration. There is also a growing realization that LA-ICP-MS has potential in biochemical studies, and geochemists have begun to turn their attention in this direction, working closely with biologists. Unlike many geologic processes, the timescales of biologic processes are measured in years to centuries and are frequently amenable to absolute dating. Examples that can be cited where LA-ICP-MS has been applied include annual trace metal variations in tree rings, corals, teeth, bones, bird feathers and various animal vibrissae (sea lion, walrus, wolf). The aim of such studies is to correlate trace element variations with changes in environmental variables. Such studies are proving informative in climate change and habitat management. Again, such variations have been quantified with the availability of appropriate organic, carbonate and phosphate calibration standards.

A new Mantle Source Tapped During Episode 55 of the Pu'u O'o Eruption From Kilauea Volcano

NASA Astrophysics Data System (ADS)

Marske, J. P.; Pietruszka, A. J.; Garcia, M. O.; Rhodes, J. M.

2005-12-01

Over 22 years of continuous geochemical monitoring of lavas from the current Pu'u O'o eruption allows us to probe the mantle and crustal processes beneath Kilauea Volcano in unparalleled detail. Episode 55 (1997-present) marks the longest and most voluminous Pu'u O'o eruptive interval. Here we present new Pb, Sr, and Nd isotopic ratios and major- and trace-element abundances for the most recent lavas (1999-2005). MgO variation diagrams show that most of the major-element variations are related to olivine fractionation. However, Pu'u O'o lavas display longer-term systematic decreases in their TiO2, K2O, P2O5 and CaO abundances (at a given MgO) due to changes in the parental magma composition. Incompatible element ratios (K2O/TiO2, Nb/Y, Nb/Zr) and MgO-normalized abundances (Sr, Rb, K) in episode 55 lavas delimit the lowest values observed during the Pu'u O'o eruption. Earlier Pu'u O'o lavas displayed a temporal decrease in highly over moderately incompatible trace-element ratios, near constant SiO2 contents, and a gradual increase in 87Sr/86Sr. However, episode 55 lavas (between days 5500-6500) record an increase in MgO-normalized SiO2 contents and even higher 87Sr/86Sr with near constant incompatible trace-element ratios. Neither a single mantle source composition nor a change in partial melting conditions can explain these observations. Based on 226Ra-230Th-238U disequilibria and partial melting modeling of trace elements, we conclude that Pu'u O'o lavas originate from at least two distinct mantle source components: (1) a recently depleted component that was subsequently remelted to explain the overall decreases of incompatible major- and trace-element ratios and abundances, and (2) a compositionally and isotopically distinct mantle component that was not previously melted within the Hawaiian plume to explain the temporal increase in 87Sr/86Sr and SiO2 abundances and the flattening trend of incompatible trace-element ratios. This second component lies within typical Pb, Sr and Nd isotopic space for Kilauea, but represents a new source composition for the Pu'u O'o eruption. These results can be explained by a recent (1999) change in the size or location of Pu'u O'o's melting region, which allowed this new source to be tapped.

Spatial and seasonal variations of elemental composition in Mt. Everest (Qomolangma) snow/firn

NASA Astrophysics Data System (ADS)

Kang, Shichang; Zhang, Qianggong; Kaspari, Susan; Qin, Dahe; Cong, Zhiyuan; Ren, Jiawen; Mayewski, Paul A.

In May 2005, a total of 14 surface snow (0-10 cm) samples were collected along the climbing route from the advanced base camp to the summit (6500-8844 m a.s.l.) on the northern slope of Mt. Everest (Qomolangma). A 108 m firn/ice core was retrieved from the col of the East Rongbuk Glacier (28.03°N, 86.96°E, 6518 m a.s.l.) on the north eastern saddle of Mt. Everest in September 2002. Surface snow and the upper 3.5 m firn samples from the core were analyzed for major and trace elements by inductively coupled plasma mass spectroscopy (ICP-MS). Measurements show that crustal elements dominated both surface snow and the firn core, suggesting that Everest snow chemistry is mainly influenced by crustal aerosols from local rock or prevalent spring dust storms over southern/central Asia. There are no clear trends for element variations with elevation due to local crustal aerosol inputs or redistribution of surface snow by strong winds during the spring. Seasonal variability in snow/firn elements show that high elemental concentrations occur during the non-monsoon season and low values during the monsoon season. Ca, Cr, Cs, and Sr display the most distinct seasonal variations. Elemental concentrations (especially for heavy metals) at Mt. Everest are comparable with polar sites, generally lower than in suburban areas, and far lower than in large cities. This indicates that anthropogenic activities and heavy metal pollution have little effect on the Mt. Everest atmospheric environment. Everest firn core REE concentrations are the first reported in the region and seem to be comparable with those measured in modern and Last Glacial Maximum snow/ice samples from Greenland and Antarctica, and with precipitation samples from Japan and the East China Sea. This suggests that REE concentrations measured at Everest are representative of the background atmospheric environment.

Variational formulation of high performance finite elements: Parametrized variational principles

NASA Technical Reports Server (NTRS)

Felippa, Carlos A.; Militello, Carmello

1991-01-01

High performance elements are simple finite elements constructed to deliver engineering accuracy with coarse arbitrary grids. This is part of a series on the variational basis of high-performance elements, with emphasis on those constructed with the free formulation (FF) and assumed natural strain (ANS) methods. Parametrized variational principles that provide a foundation for the FF and ANS methods, as well as for a combination of both are presented.

Microanalysis study on ancient Wiangkalong Pottery

NASA Astrophysics Data System (ADS)

Won-in, K.; Tancharakorn, S.; Dararutana, P.

2017-09-01

Wiangkalong is one of major ceramic production cities in northern of Thailand, once colonized by the ancient Lanna Kingdom (1290 A.D.). Ancient Wiangkalong potteries were produced with shapes and designs as similar as those of the Chinese Yuan and Ming Dynasties. Due to the complex nature of materials and objects, extremely sensitive, spatially resolved, multi-elemental and versatile analytical instruments using non-destructive and non-sampling methods to analyze theirs composition are need. In this work, micro-beam X-ray fluorescence spectroscopy based on synchrotron radiation was firstly used to characterize the elemental composition of the ancient Wiangkalong pottery. The results showed the variations in elemental composition of the body matrix, the glaze and the underglaze painting, such as K, Ca, Ti, V, Cr, Mn and Fe.

Biomedical studies by PIXE

NASA Astrophysics Data System (ADS)

Afarideh, H.; Amirabadi, A.; Hadji-Saeid, S. M.; Mansourian, N.; Kaviani, K.; Zibafar, E.

1996-04-01

In the present biomedical research, PIXE a powerful technique for elemental analysis was employed to illustrate the importance of multi-elemental determination of serum trace elements in two cases of great medical interest. Those are evaluation of the desferroxamine drug (DPO), a widely used therapy for patient with β-thalassemia-Major (β-thal-M), and investigation of elemental variations in blood-serum in hyperbilirubinamia new-borns before and after blood transfusion (BT). The purpose of the work is to demonstrate the various aspects of PIXE analysis by some practical examples as well as to draw some general conclusions regarding the cure of those patients with the above mentioned disorders or diseases. To present in details each case, we divide the paper in two parts: part 1 and part 2 to consider the experimental procedure as well as the results individually.

Finite element modelling for mode-I fracture behaviour of CFRP

NASA Astrophysics Data System (ADS)

Chetan, H. C.; Kattimani, Subhaschandra; Murigendrappa, S. M.

2018-04-01

Debonding is a major failure mechanism in Carbon Fiber Reinforced Polymer (CFRP) due to presence of many adhesion joins, in between many layers. In the current study a finite element simulation is carried out using Virtual Crack Closure Technique (VCCT) and Cohesive Zone Modelling (CZM) using Abaqus as analysis tool. A comparative study is performed in to order analyze convergence of results from CZM and VCCT. It was noted that CZM results matched well with published literature. The results from VCCT were also in good comparison with experimental data of published literature, but were seen to be overestimated. Parametric study is performed to evaluate the variation of input parameters like initial stiffness, element size, peak stress and energy release rate `G'. From the numerical evaluation, it was noted that CZM simulation relies largely on element size and peak stress.

Monsoonal variations in atmospheric surfactants at different coastal areas of the Malaysian Peninsula.

PubMed

Jaafar, Shoffian Amin; Latif, Mohd Talib; Razak, Intan Suraya; Shaharudin, Muhammad Zulhilmi; Khan, Md Firoz; Wahid, Nurul Bahiyah Abd; Suratman, Suhaimi

2016-08-15

This study determined the effect of monsoonal changes on the composition of atmospheric surfactants in coastal areas. The composition of anions (SO4(2-), NO3(-), Cl(-), F(-)) and the major elements (Ca, K, Mg, Na) in aerosols were used to determine the possible sources of surfactants. Surfactant compositions were determined using a colorimetric method as methylene blue active substances (MBAS) and disulphine blue active substances (DBAS). The anion and major element compositions of the aerosol samples were determined by ion chromatography (IC) and inductively coupled plasma mass spectrometry (ICP-MS), respectively. The results indicated that the concentrations of surfactant in aerosols were dominated by MBAS (34-326pmolm(-3)). Monsoonal changes were found to significantly affect the concentration of surfactants. Using principal component analysis-multiple linear regressions (PCA-MLR), major possible sources for surfactants in the aerosols were motor vehicle emissions, secondary aerosol and the combustion of biomass along with marine aerosol. Copyright © 2016 Elsevier Ltd. All rights reserved.

Geochemical and Isotopic (Sr, U) Tracing of Weathering Processes Controlling the Recent Geochemical Evolution of Soil Solutions in the Strengbach Catchment (Vosges, France)

NASA Astrophysics Data System (ADS)

Chabaux, F. J.; Prunier, J.; Pierret, M.; Stille, P.

2012-12-01

The characterization of the present-day weathering processes controlling the chemical composition of waters and soils in natural ecosystems is an important issue to predict and to model the response of ecosystems to recent environmental changes. It is proposed here to highlight the interest of a multi-tracer geochemical approach combining measurement of major and trace element concentrations along with U and Sr isotopic ratios to progress in this topic. This approach has been applied to the small granitic Strengbah Catchment, located in the Vosges Mountain (France), used and equipped as a hydro-geochemical observatory since 1986 (Observatoire Hydro-Géochimique de l'Environnement; http://ohge.u-strasbg.fr). This study includes the analysis of major and trace element concentrations and (U-Sr) isotope ratios in soil solutions collected within two soil profiles located on two experimental plots of this watershed, as well as the analysis of soil samples and vegetation samples from these two plots The depth variation of elemental concentration of soil solutions confirms the important influence of the vegetation cycling on the budget of Ca, K, Rb and Sr, whereas Mg and Si budget in soil solutions are quasi exclusively controlled by weathering processes. Variation of Sr, and U isotopic ratios with depth also demonstrates that the sources and biogeochemical processes controlling the Sr budget of soil solutions is different in the uppermost soil horizons and in the deeper ones, and clearly influence by the vegetation cycling.

Chemical loading into surface water along a hydrological, biogeochemical, and land use gradient: A holistic watershed approach

USGS Publications Warehouse

Barber, L.B.; Murphy, S.F.; Verplanck, P.L.; Sandstrom, M.W.; Taylor, Howard E.; Furlong, E.T.

2006-01-01

Identifying the sources and impacts of organic and inorganic contaminants at the watershed scale is a complex challenge because of the multitude of processes occurring in time and space. Investigation of geochemical transformations requires a systematic evaluation of hydrologic, landscape, and anthropogenic factors. The 1160 km2 Boulder Creek Watershed in the Colorado Front Range encompasses a gradient of geology, ecotypes, climate, and urbanization. Streamflow originates primarily as snowmelt and shows substantial annual variation. Water samples were collected along a 70-km transect during spring-runoff and base-flow conditions, and analyzed for major elements, trace elements, bulk organics, organic wastewater contaminants (OWCs), and pesticides. Major-element and trace-element concentrations were low in the headwaters, increased through the urban corridor, and had a step increase downstream from the first major wastewater treatment plant (WWTP). Boron, gadolinium, and lithium were useful inorganic tracers of anthropogenic inputs. Effluent from the WWTP accounted for as much as 75% of the flow in Boulder Creek and was the largest chemical input. Under both hydrological conditions, OWCs and pesticides were detected in Boulder Creek downstream from the WWTP outfall as well as in the headwater region, and loads of anthropogenic-derived contaminants increased as basin population density increased. This report documents a suite of potential endocrine-disrupting chemicals in a reach of stream with native fish populations showing indication of endocrine disruption.

Genomic analysis reveals major determinants of cis-regulatory variation in Capsella grandiflora

PubMed Central

Steige, Kim A.; Laenen, Benjamin; Reimegård, Johan; Slotte, Tanja

2017-01-01

Understanding the causes of cis-regulatory variation is a long-standing aim in evolutionary biology. Although cis-regulatory variation has long been considered important for adaptation, we still have a limited understanding of the selective importance and genomic determinants of standing cis-regulatory variation. To address these questions, we studied the prevalence, genomic determinants, and selective forces shaping cis-regulatory variation in the outcrossing plant Capsella grandiflora. We first identified a set of 1,010 genes with common cis-regulatory variation using analyses of allele-specific expression (ASE). Population genomic analyses of whole-genome sequences from 32 individuals showed that genes with common cis-regulatory variation (i) are under weaker purifying selection and (ii) undergo less frequent positive selection than other genes. We further identified genomic determinants of cis-regulatory variation. Gene body methylation (gbM) was a major factor constraining cis-regulatory variation, whereas presence of nearby transposable elements (TEs) and tissue specificity of expression increased the odds of ASE. Our results suggest that most common cis-regulatory variation in C. grandiflora is under weak purifying selection, and that gene-specific functional constraints are more important for the maintenance of cis-regulatory variation than genome-scale variation in the intensity of selection. Our results agree with previous findings that suggest TE silencing affects nearby gene expression, and provide evidence for a link between gbM and cis-regulatory constraint, possibly reflecting greater dosage sensitivity of body-methylated genes. Given the extensive conservation of gbM in flowering plants, this suggests that gbM could be an important predictor of cis-regulatory variation in a wide range of plant species. PMID:28096395

Petrogenesis and tectonic association of rift-related basic Panjal dykes from the northern Indian plate, North-Western Pakistan: evidence of high-Ti basalts analogous to dykes from Tibet

NASA Astrophysics Data System (ADS)

Sajid, Muhammad; Andersen, Jens; Arif, Mohammad

2017-10-01

Rift related magmatism during Permian time in the northern margin of Indian plate is represented by basic dykes in several Himalayan terranes including north western Pakistan. The field relations, mineralogy and whole rock geochemistry of these basic dykes reveal significant textural, mineralogical and chemical variation between two major types (a) dolerite and (b) amphibolite. Intra-plate tectonic settings for both rock types have been interpreted on the basis of low Zr/Nb ratios (< 10), K/Ba ratios (20-40) and Hf-Ta-Th and FeO-MgO-Al2O3 discrimination diagrams. The compositional zoning in plagioclase and clinopyroxene, variation in olivine compositions and major elements oxide trends indicate a vital role of fractional crystallization in the evolution of dolerites, which also show depletion in rare earth elements (REEs) and other incompatible elements compared to the amphibolites. The equilibrium partial melting models from primitive mantle using Dy/Yb, La/Yb, Sm/Yb and La/Sm ratios show that amphibolite formed by smaller degrees (< 5%) of partial melting than the dolerites (< 10%). The trace elements ratios suggest the origination of dolerites from the subcontinental lithospheric mantle with some crustal contamination. This is consistent with a petrogenetic relationship with Panjal trap magmatism, reported from Kashmir and other parts of north western India. The amphibolites, in contrast, show affinity towards Ocean Island basalts (OIB) with a relatively deep asthenospheric mantle source and minimal crustal contribution and are geochemically similar to the High-Ti mafic dykes of southern Qiangtang, Tibet. These similarities combined with Permian tectonic restoration of Gondwana indicate the coeval origin for both dykes from distinct mantle source during continental rifting related to formation of the Neotethys Ocean.

Elemental and chemical characterization of dolphin enamel and dentine using X-ray and Raman microanalyzes (Cetacea: Delphinoidea and Inioidea).

PubMed

Loch, Carolina; Swain, Michael V; Fraser, Sara J; Gordon, Keith C; Kieser, Jules A; Fordyce, R Ewan

2014-01-01

Dolphins show increased tooth number and simplified tooth shape compared to most mammals, together with a simpler ultrastructural organization and less demanding biomechanical function. However, it is unknown if these factors are also reflected in the chemical composition of their teeth. Here, the bulk chemical composition and elemental distribution in enamel and dentine of extant dolphins were characterized and interpreted using X-ray and spectroscopy techniques. Teeth of 10 species of Delphinida were analyzed by WDX, EDX and Raman spectroscopy. For most of the species sampled, the mineral content was higher in enamel than in dentine, increasing from inner towards outer enamel. The transition from dentine to enamel was marked by an increase in concentration of the major components Ca and P, but also in Na and Cl. Mg decreased from dentine to enamel. Concentrations of Sr and F were often low and below detection limits, but F peaked at the outer enamel region for some species. Raman spectroscopy analyzes showed characteristics similar to carbonated hydroxyapatite, with the strongest peak for the phosphate PO4(3-) stretching mode at 960-961cm(-1). Dentine samples revealed a higher diversity of peaks representative of organic components and proteins than enamel. The similar distribution pattern and small variation in average concentration of major and minor elements in dentine and enamel of dolphins suggest that they are subject to strong physiological control. A clear trend of the elemental variations for all dolphin species sampled suggests that the general pattern of tooth chemistry is conserved among the Mammalia. Copyright © 2013 Elsevier Inc. All rights reserved.

Petrogenesis and tectonic association of rift-related basic Panjal dykes from the northern Indian plate, North-Western Pakistan: evidence of high-Ti basalts analogous to dykes from Tibet

NASA Astrophysics Data System (ADS)

Sajid, Muhammad; Andersen, Jens; Arif, Mohammad

2018-06-01

Rift related magmatism during Permian time in the northern margin of Indian plate is represented by basic dykes in several Himalayan terranes including north western Pakistan. The field relations, mineralogy and whole rock geochemistry of these basic dykes reveal significant textural, mineralogical and chemical variation between two major types (a) dolerite and (b) amphibolite. Intra-plate tectonic settings for both rock types have been interpreted on the basis of low Zr/Nb ratios (< 10), K/Ba ratios (20-40) and Hf-Ta-Th and FeO-MgO-Al2O3 discrimination diagrams. The compositional zoning in plagioclase and clinopyroxene, variation in olivine compositions and major elements oxide trends indicate a vital role of fractional crystallization in the evolution of dolerites, which also show depletion in rare earth elements (REEs) and other incompatible elements compared to the amphibolites. The equilibrium partial melting models from primitive mantle using Dy/Yb, La/Yb, Sm/Yb and La/Sm ratios show that amphibolite formed by smaller degrees (< 5%) of partial melting than the dolerites (< 10%). The trace elements ratios suggest the origination of dolerites from the subcontinental lithospheric mantle with some crustal contamination. This is consistent with a petrogenetic relationship with Panjal trap magmatism, reported from Kashmir and other parts of north western India. The amphibolites, in contrast, show affinity towards Ocean Island basalts (OIB) with a relatively deep asthenospheric mantle source and minimal crustal contribution and are geochemically similar to the High-Ti mafic dykes of southern Qiangtang, Tibet. These similarities combined with Permian tectonic restoration of Gondwana indicate the coeval origin for both dykes from distinct mantle source during continental rifting related to formation of the Neotethys Ocean.

Trace Element Study of MORB Glasses from 14¡ã-16¡ãN along Mid-Atlantic Ridge by LA-ICP- MS

NASA Astrophysics Data System (ADS)

Barzoi, C. A.; Casey, J. F.; Gao, Y.; Lapen, T.

2007-12-01

A comparison of 20 MORB glasses from 14°-16° N along the Mid-Atlantic Ridge using both solution-based and in situ laser ablation-based ICP-MS trace element analyses on the same samples was conducted. Li, Be, Sc, Ti, V, Cr, Co, Ni, Cu, Zn, Ga, Rb, Sr, Y, Zr, Nb, Ba, La, Ce, Pr, Nd, Sm, Eu, Tb, Gd, Dy, Ho, Er, Tm, Yb,Lu, Hf, Ta, Pb, Th, and U were analyzed using the Varian 810 quadrupole ICP-MS. The instrument features a 90 degree ion mirror and low noise double-off-axis quadrupole that allows high sensitivity and low backgrounds. Precision in term of relative standard deviation (RSD) of the measurements for both methods based on repeated analyses of USGS BIR-1G and BHVO-2G glass standards and Max Planck KL-2G glass standard is within 5 % for all trace elements with the exception of Pb, which averaged 12 %. Measured trace element abundances are within 2% of recommended standard values using both solution and laser ablation methods. Comparison between the analyte concentrations obtained by solution-based ICP-MS and in situ microanalysis by laser ablation reveals little systematic differences in abundances(<5% for all elements). The two-method correlation and strong repeatability of the results indicate that rapid in situ trace element analysis by laser ablation ICP-MS is likely to become a preferred method of trace element analysis for MORB glasses. Our geochemical results and previous studies of MORB glasses in the region of the MAR between 14°-16°N show that basalts are characterized isotopic and incompatible element enrichment.The nature of the enrichment has been the topic of significant discussion and speculation because a specific mantle plume is not well defined in the region. Likewise the magma supply is probably small in the region as the magmatic crust is interpreted to be very thin in most of the area studied. Integrated studies of major element, trace element, and isotopic variations among basalts, gabbroic rocks and igneous and residual ultramafic rocks in the region indicate that 1) the enriched basalts have positive Ta-Nb anomalies, enriched relative to U, Th, and La 2) basalts have relatively high SiO2 abundances compared to the global average, 3) basalts show a HIMU isotopic signature, and 4) bulk major element abundances and mineral chemistry in mantle rocks indicate that they are among the most depleted,although variably refertilized, residual mantle assemblages sampled to date along MORs.We suggest that much of the regional variation in major and trace element data, as well as isotopic data and the unusual regional geology (multiple core complexes) can be explained by melting of a sub-axial mantle that contains two end members, one highly depleted and the other enriched. These components appear to involve ancient recycled ocean crust and lithospheric mantle.

Genome-Wide Comparison of Magnaporthe Species Reveals a Host-Specific Pattern of Secretory Proteins and Transposable Elements

PubMed Central

Gowda, Malali

2016-01-01

Blast disease caused by the Magnaporthe species is a major factor affecting the productivity of rice, wheat and millets. This study was aimed at generating genomic information for rice and non-rice Magnaporthe isolates to understand the extent of genetic variation. We have sequenced the whole genome of the Magnaporthe isolates, infecting rice (leaf and neck), finger millet (leaf and neck), foxtail millet (leaf) and buffel grass (leaf). Rice and finger millet isolates infecting both leaf and neck tissues were sequenced, since the damage and yield loss caused due to neck blast is much higher as compared to leaf blast. The genome-wide comparison was carried out to study the variability in gene content, candidate effectors, repeat element distribution, genes involved in carbohydrate metabolism and SNPs. The analysis of repeat element footprints revealed some genes such as naringenin, 2-oxoglutarate 3-dioxygenase being targeted by Pot2 and Occan, in isolates from different host species. Some repeat insertions were host-specific while other insertions were randomly shared between isolates. The distributions of repeat elements, secretory proteins, CAZymes and SNPs showed significant variation across host-specific lineages of Magnaporthe indicating an independent genome evolution orchestrated by multiple genomic factors. PMID:27658241

Insertion and deletion polymorphisms of the ancient AluS family in the human genome.

PubMed

Kryatova, Maria S; Steranka, Jared P; Burns, Kathleen H; Payer, Lindsay M

2017-01-01

Polymorphic Alu elements account for 17% of structural variants in the human genome. The majority of these belong to the youngest AluY subfamilies, and most structural variant discovery efforts have focused on identifying Alu polymorphisms from these currently retrotranspositionally active subfamilies. In this report we analyze polymorphisms from the evolutionarily older AluS subfamily, whose peak activity was tens of millions of years ago. We annotate the AluS polymorphisms, assess their likely mechanism of origin, and evaluate their contribution to structural variation in the human genome. Of 52 previously reported polymorphic AluS elements ascertained for this study, 48 were confirmed to belong to the AluS subfamily using high stringency subfamily classification criteria. Of these, the majority (77%, 37/48) appear to be deletion polymorphisms. Two polymorphic AluS elements (4%) have features of non-classical Alu insertions and one polymorphic AluS element (2%) likely inserted by a mechanism involving internal priming. Seven AluS polymorphisms (15%) appear to have arisen by the classical target-primed reverse transcription (TPRT) retrotransposition mechanism. These seven TPRT products are 3' intact with 3' poly-A tails, and are flanked by target site duplications; L1 ORF2p endonuclease cleavage sites were also observed, providing additional evidence that these are L1 ORF2p endonuclease-mediated TPRT insertions. Further sequence analysis showed strong conservation of both the RNA polymerase III promoter and SRP9/14 binding sites, important for mediating transcription and interaction with retrotransposition machinery, respectively. This conservation of functional features implies that some of these are fairly recent insertions since they have not diverged significantly from their respective retrotranspositionally competent source elements. Of the polymorphic AluS elements evaluated in this report, 15% (7/48) have features consistent with TPRT-mediated insertion, thus suggesting that some AluS elements have been more active recently than previously thought, or that fixation of AluS insertion alleles remains incomplete. These data expand the potential significance of polymorphic AluS elements in contributing to structural variation in the human genome. Future discovery efforts focusing on polymorphic AluS elements are likely to identify more such polymorphisms, and approaches tailored to identify deletion alleles may be warranted.

Elemental concentration variations in Plio-Pleistocene sediments from ODP Site 1143 (southern South China Sea) obtained by XRF analyses

NASA Astrophysics Data System (ADS)

Tian, J.; Xie, X.; Jin, H.; Wang, P.; Jian, Z.

2009-12-01

Energy dispersive X-ray fluorescence (XRF) scanning technology provides the most accurate and most economic analytical methods for the determination of major and minor elements of the deep-sea sediment ranging from sodium (11) to uranium (92). Scanning on the smooth core surface by XRF Core scanner is reliable and non-destructive to the sediment, requiring little or no time to prepare the core. This method overcomes the drawback of the traditional analytical method by ICP-AES or ICP-MS which requires long time for sample preparation. Thus, it makes it viable to reconstruct long and high-resolution elemental time series from sediment cores. We have performed relatively elemental concentration analyses on the deep sea sediment cores from ODP site 1143 (southern SCS) down to 190.77 mcd (meters composite depth) by XRF core scanner. The depth resolution of the scanning is 1 cm, equivalent to a time resolution of ~250 years. The age model is based on tuning the benthic foraminiferal d18O at Site 1143 to obliquity and precession (Tian et al., 2002) which indicates that the 190.77 meters long sediment spans the past 5 Myr. We compared the records between 99.5 and 136.46 mcd with the elemental records from the same site obtained by Philips PW 2400 X-ray spectrometer (Wehausen et al., online publication). Comparison reveals, regardless of the absolute changes of the elements, that the elemental records (Si, Ti, Al, Fe, Mn, Ca, K, P, Ba, Rb, Sr) obtained by two methods are nearly the same. Results show that the relative concentration variations of the productivity related elements such as Ba and Ca display distinctive glacial-interglacial cycles for the past 5 Myr. These productivity cycles recorded show one-on-one relationship with the glacial-interglacial cycles of the global ice volume change recorded in the benthic foraminiferal d18O. The glacial-interglacial cycles in productivity and global ice volume changes are consistent with each other not only in amplitude but also in secular variations. The benthic d18O implies the final formation of the northern hemisphere glaciation between ~2.5 Ma and ~3.3 Ma, as indicated by gradually increased values of d18O. During this period, both Ba and Ca show gradually increased values of relative concentration, indicating increased productivity which was probably caused by intensified East Asia summer monsoon. The close relationship of the productivity related elemental variations with benthic foraminiferal d18O reveals that the Plio-Pleistocene variations of the East Asian monsoon have been greatly dominated by global ice volume change. Although the elements related to terrigenous detrital matter composition of site 1143 such as Ti, Fe, As, Co and Ni display distinct glacial-interglacial cycles for the past 5 Myr, they display different patterns in secular variation with that of the benthic foraminiferal d18O. The mismatch indicates that besides northern hemisphere glaciation other multiple processes including changes in provenance and weathering intensity caused by monsoonal climate variability and sea level fluctuations could have affected the terrigenous detrital matter composition of site 1143.

Geochemical differentiation processes for arc magma of the Sengan volcanic cluster, Northeastern Japan, constrained from principal component analysis

NASA Astrophysics Data System (ADS)

Ueki, Kenta; Iwamori, Hikaru

2017-10-01

In this study, with a view of understanding the structure of high-dimensional geochemical data and discussing the chemical processes at work in the evolution of arc magmas, we employed principal component analysis (PCA) to evaluate the compositional variations of volcanic rocks from the Sengan volcanic cluster of the Northeastern Japan Arc. We analyzed the trace element compositions of various arc volcanic rocks, sampled from 17 different volcanoes in a volcanic cluster. The PCA results demonstrated that the first three principal components accounted for 86% of the geochemical variation in the magma of the Sengan region. Based on the relationships between the principal components and the major elements, the mass-balance relationships with respect to the contributions of minerals, the composition of plagioclase phenocrysts, geothermal gradient, and seismic velocity structure in the crust, the first, the second, and the third principal components appear to represent magma mixing, crystallizations of olivine/pyroxene, and crystallizations of plagioclase, respectively. These represented 59%, 20%, and 6%, respectively, of the variance in the entire compositional range, indicating that magma mixing accounted for the largest variance in the geochemical variation of the arc magma. Our result indicated that crustal processes dominate the geochemical variation of magma in the Sengan volcanic cluster.

Preliminary Geochemical and Rock Magnetic Study of a Stalagmite From Quintana Roo, Northeastern Yucatan Peninsula

NASA Astrophysics Data System (ADS)

Urrutia-Fucugauchi, J.; Perez-Cruz, L.; Zhao, X.; Rebolledo-Vieyra, M.; Rodriguez, A.

2012-04-01

We present the preliminary results of geochemical, stable isotopes and rock magnetic studies of a stalagmite from a cave in eastern Quintana Roo, northern Yucatan peninsula. In the past years, there has been increased interest in understanding the paleoclimatic and paleoenvironmental evolution of the Yucatan peninsula and northern Central America, investigating the relationships between climate variations and the development of the Maya civilization. In particular, the variations in regional precipitation and occurrence of several drought periods, which might have been related to the collapse of the Classic Maya period. Stable isotope data on speleothems from different sites in Yucatan and Central America have provided evidence on changes in precipitation, which have affected the Maya region. The stalagmite is ~47 cm long and about 4-5 cm wide at its base. It was collected from the Hilariós Well cave in Tulum, Quintana Roo. Magnetic susceptibility and geochemical analyses have been completed as part of the initial characterization of the stalagmite, with measurements taken every centimeter. Geochemical analyses have been carried out for x-ray fluorescence, with a Niton XRF analyzer. Magnetic susceptibility was determined with a Bartington MS2 instrument using the high resolution surface probe. Additional rock magnetic analyses include magnetic hysteresis loops and isothermal remanent magnetization (IRM) acquisition, and saturation IRM demagnetization, which have been measured with a MicroMag instrument. Hysteresis loops are diamagnetic, with small varying low-coercivity ferromagnetic components. The elemental compositions of major oxides and trace elements vary with depth. Calcium is the major element and displays a pattern of small amplitude fluctuations with a trend to lower values at the bottom, which are also shown in other elements such as barium. Silica and elements such as titanium and strontium are positively correlated and show an apparent cyclic pattern, with a trend to higher values towards the bottom.

An Integrated Encyclopedia of DNA Elements in the Human Genome

PubMed Central

2012-01-01

Summary The human genome encodes the blueprint of life, but the function of the vast majority of its nearly three billion bases is unknown. The Encyclopedia of DNA Elements (ENCODE) project has systematically mapped regions of transcription, transcription factor association, chromatin structure, and histone modification. These data enabled us to assign biochemical functions for 80% of the genome, in particular outside of the well-studied protein-coding regions. Many discovered candidate regulatory elements are physically associated with one another and with expressed genes, providing new insights into the mechanisms of gene regulation. The newly identified elements also show a statistical correspondence to sequence variants linked to human disease, and can thereby guide interpretation of this variation. Overall the project provides new insights into the organization and regulation of our genes and genome, and an expansive resource of functional annotations for biomedical research. PMID:22955616

Free Mesh Method: fundamental conception, algorithms and accuracy study

PubMed Central

YAGAWA, Genki

2011-01-01

The finite element method (FEM) has been commonly employed in a variety of fields as a computer simulation method to solve such problems as solid, fluid, electro-magnetic phenomena and so on. However, creation of a quality mesh for the problem domain is a prerequisite when using FEM, which becomes a major part of the cost of a simulation. It is natural that the concept of meshless method has evolved. The free mesh method (FMM) is among the typical meshless methods intended for particle-like finite element analysis of problems that are difficult to handle using global mesh generation, especially on parallel processors. FMM is an efficient node-based finite element method that employs a local mesh generation technique and a node-by-node algorithm for the finite element calculations. In this paper, FMM and its variation are reviewed focusing on their fundamental conception, algorithms and accuracy. PMID:21558752

Whole-rock analyses of core samples from the 1988 drilling of Kilauea Iki lava lake, Hawaii

USGS Publications Warehouse

Helz, Rosalind Tuthill; Taggart, Joseph E.

2010-01-01

This report presents and evaluates 64 major-element analyses of previously unanalyzed Kilauea Iki drill core, plus three samples from the 1959 and 1960 eruptions of Kilauea, obtained by X-ray fluorescence (XRF) analysis during the period 1992 to 1995. All earlier major-element analyses of Kilauea Iki core, obtained by classical (gravimetric) analysis, were reported and evaluated in Helz and others (1994). In order to assess how well the newer data compare with this earlier suite of analyses, a subset of 24 samples, which had been analyzed by classical analysis, was reanalyzed using the XRF technique; those results are presented and evaluated in this report also. The XRF analyses have not been published previously. This report also provides an overview of how the chemical variations observed in these new data fit in with the chemical zonation patterns and petrologic processes inferred in earlier studies of Kilauea Iki.

Use of olivine and plagioclase saturation surfaces for the petrogenetic modeling of recrystallized basic plutonic systems

NASA Technical Reports Server (NTRS)

Hanson, G. N.

1983-01-01

During petrogenetic studies of basic plutonic rocks, there are at least three major questions to be considered: (1) what were the relative proportions of cumulate crystals and intercumulus melt in a given sample? (2) what is the composition and variation in composition of the melts within the pluton? and (3) what is the original composition of the liquids, their source and evolution prior to the time of emplacement? Use of both saturation surfaces can place strong limits on the compositions of potential cumulate phases and intercumulus melts. Consideration of appropriate trace elements can indicate whether a sample is an orthocumulate, adcumulate or mesocumulate. Thus, when trace element and petrographic data are considered together with the saturation surfaces, it should be possible to begin to answer the three major questions given above, even for strongly recrystallized basic plutons.

Evidence for a chondritic impactor, evaporation-condensation effects and melting of the Precambrian basement beneath the 'target' Deccan basalts at Lonar crater, India

NASA Astrophysics Data System (ADS)

Das Gupta, Rahul; Banerjee, Anupam; Goderis, Steven; Claeys, Philippe; Vanhaecke, Frank; Chakrabarti, Ramananda

2017-10-01

The ∼1.88 km diameter Lonar impact crater formed ∼570 ka ago and is an almost circular depression hosted entirely in the Poladpur suite of the ∼65 Ma old basalts of the Deccan Traps. To understand the effects of impact cratering on basaltic targets, commonly found on the surfaces of inner Solar System planetary bodies, major and trace element concentrations as well as Nd and Sr isotopic compositions were determined on a suite of selected samples composed of: basalts, a red bole sample, which is a product of basalt alteration, impact breccia, and impact glasses, either in the form of spherules (<1 mm in diameter) or non-spherical impact glasses (>1 mm and <1 cm). These data include the first highly siderophile element (HSE) concentrations for the Lonar spherules. The chemical index of alteration (CIA) values for the basalts and impact breccia (36.4-42.7) are low while the red bole sample shows a high CIA value (55.6 in the acid-leached sample), consistent with its origin by aqueous alteration of the basalts. The Lonar spherules are classified into two main groups based on their CIA values. Most spherules show low CIA values (Group 1: 34.7-40.5) overlapping with the basalts and impact breccia, while seven spherules show significantly higher CIA values (Group 2: >43.0). The Group 1 spherules are further subdivided into Groups 1a and 1b, with Group 1a spherules showing higher Ni and mostly higher Cr compared to the Group 1b spherules. Iridium and Cr concentrations of the spherules are consistent with the admixture of 1-8 wt% of a chondritic impactor to the basaltic target rocks. The impactor contribution is most prominent in the Group 1a and Group 2 spherules, which show higher Ni/Co, Ni/Cr and Cr/Co ratios compared to the target basalts. In contrast, the Group 1b spherules show major and trace element compositions that overlap with those of the impact breccia and are characterized by high EFTh (Enrichment Factor for Th defined as the Nb-normalized concentration of Th relative to that of the average basalt) as well as fractionated La/Sm(N), and higher large ion lithophile element (LILE) concentrations compared to the basalts. The relatively more radiogenic Sr and less radiogenic Nd isotopic composition of the impact breccia and non-spherical impact glasses compared to the target basalts are consistent with melting and mixing of the Precambrian basement beneath the Deccan basalt with up to 15 wt% contribution of the basement to these samples. Variations in the moderately siderophile element (MSE) concentration ratios of the impact breccia as well as all the spherules are best explained by contributions from three components - a chondritic impactor, the basaltic target rocks at Lonar and the basement underlying the Deccan basalts. The large variations in concentrations of volatile elements like Zn and Cu and correlated variations of EFCu-EFZn, EFPb-EFZn, EFK-EFZn and EFNa-EFZn, particularly in the Group 1a spherules, are best explained by evaporation-condensation effects during impact. While most spherules, irrespective of their general major and trace element composition, show a loss in volatile elements (e.g., Zn and Cu) relative to the target basalts, some spherules, mainly of Group 1, display enrichments in these elements that are interpreted to reflect the unique preservation of volatile-rich vapour condensates resulting from geochemical fractionation in a vertical direction within the vapour cloud.

A Synthesis of Experimental Data Describing the Partitioning of Moderately Volatile Elements in Major Rock Forming Minerals: Implications for the Moon

NASA Technical Reports Server (NTRS)

Vander Kaaden, Kathleen E.; Draper, David S.; McCubbin, Francis M.; Neal, Clive R.; Taylor, G. Jeffrey

2017-01-01

Highly volatile elements [condensation temperatures below about 700 K] and water are highly informative about lunar bulk composition (hence origin), differentiation and magmatic evolution, and the role of impacts in delivering volatiles to the Moon. Fractionation of volatile elements compared to moderately volatile and refractory elements are informative about high-temperature conditions that operated in the proto-lunar disk. Existing data show clearly that the Moon is depleted in volatile elements compared to the bulk silicate Earth. For example, K/Th is 400-700 in the Moon compared to 2800-3000 in Earth. A complicating factor is that the abundances of the highly volatile elements in major lunar lithologies vary by approximately two orders of magnitude. Perhaps most interesting, H2O is not correlated with the concentration of volatile elements, indicating a decoupling of highly volatile elements from the even more volatile H2O. We contend that this decoupling could be a significant tracer of processes operating during lunar formation, differentiation, and bombardment, and the combination of analyzing both volatile elements and water is likely to provide significant insight into lunar geochemical history. This variation and lack of correlation raises the question: what were the relative contributions of crystallization in the magma ocean, subsequent mantle overturn, production of secondary magmas, and addition of volatiles by large impacts in producing this apparently large range in volatile abundances? This current study will produce new partitioning data relevant to the role and distribution of the volatile and non-volatile, yet geochemically significant elements (Co, Ni, Zn, Se, Rb, Sr, Mo, Ag, Cd, In, Sb, Ce, Yb, Tl, Pb, Bi) during the thermal and magmatic evolution of the Moon.

Major and trace elements in organically or conventionally produced milk.

PubMed

Hermansen, John E; Badsberg, Jens H; Kristensen, Troels; Gundersen, Vagn

2005-08-01

A total of 480 samples of milk from 10 organically and 10 conventionally producing dairy farms in Denmark and covering 8 sampling periods over 1 year (triplicate samplings) were analysed for 45 trace elements and 6 major elements by high-resolution inductively coupled plasma mass spectrometry and inductively coupled plasma atomic emission spectrometry. Sampling, sample preparation, and analysis of the samples were performed under carefully controlled contamination-free conditions. The dairy cattle breeds were Danish-Holstein or Jersey. Sources of variance were quantified, and differences between production systems and breeds were tested. The major source of variation for most elements was week of sampling. Concentrations of Al, Cu, Fe, Mo, Rb, Se, and Zn were within published ranges. Concentrations of As, Cd, Cr, Mn and Pb were lower, and concentrations of Co and Sr were higher than published ranges. Compared with Holsteins, Jerseys produced milk with higher concentrations of Ba, Ca, Cu, Fe, Mg, Mn, Mo, P, Rh, and Zn and with a lower concentration of Bi. The organically produced milk, compared with conventionally produced milk, contained a significantly higher concentration of Mo (48 v. 37 ng/g) and a lower concentration of Ba (43 v. 62 ng/g), Eu (4 v. 7 ng/g), Mn (16 v. 20 ng/g) and Zn (4400 v. 5150 ng/g respectively). The investigation yielded typical concentrations for the following trace elements in milk, for which no or very few data are available: Ba, Bi, Ce, Cs, Eu, Ga, Gd, In, La, Nb, Nd, Pd, Pr, Rh, Sb, Sm, Tb, Te, Th, Ti, Tl, U, V, Y, and Zr.

A high-quality human reference panel reveals the complexity and distribution of genomic structural variants.

PubMed

Hehir-Kwa, Jayne Y; Marschall, Tobias; Kloosterman, Wigard P; Francioli, Laurent C; Baaijens, Jasmijn A; Dijkstra, Louis J; Abdellaoui, Abdel; Koval, Vyacheslav; Thung, Djie Tjwan; Wardenaar, René; Renkens, Ivo; Coe, Bradley P; Deelen, Patrick; de Ligt, Joep; Lameijer, Eric-Wubbo; van Dijk, Freerk; Hormozdiari, Fereydoun; Uitterlinden, André G; van Duijn, Cornelia M; Eichler, Evan E; de Bakker, Paul I W; Swertz, Morris A; Wijmenga, Cisca; van Ommen, Gert-Jan B; Slagboom, P Eline; Boomsma, Dorret I; Schönhuth, Alexander; Ye, Kai; Guryev, Victor

2016-10-06

Structural variation (SV) represents a major source of differences between individual human genomes and has been linked to disease phenotypes. However, the majority of studies provide neither a global view of the full spectrum of these variants nor integrate them into reference panels of genetic variation. Here, we analyse whole genome sequencing data of 769 individuals from 250 Dutch families, and provide a haplotype-resolved map of 1.9 million genome variants across 9 different variant classes, including novel forms of complex indels, and retrotransposition-mediated insertions of mobile elements and processed RNAs. A large proportion are previously under reported variants sized between 21 and 100 bp. We detect 4 megabases of novel sequence, encoding 11 new transcripts. Finally, we show 191 known, trait-associated SNPs to be in strong linkage disequilibrium with SVs and demonstrate that our panel facilitates accurate imputation of SVs in unrelated individuals.

A 1400 km geochemical transect along the Central American Arc: Summary of mafic Holocene volcanism from Guatemala to Panama

NASA Astrophysics Data System (ADS)

Geldmacher, J.; Hoernle, K.; Gill, J. B.; Hauff, F.; Heydolph, K.

2016-12-01

It is generally accepted that subducted oceanic crust and sediments contribute to the composition of arc magmas. Systematic variations of input parameters (including age, subduction angle, and chemical composition of the subducting material) make the Central American Volcanic Arc (CAVA), which extends from Guatemala in the northwest through El Salvador, Honduras, Nicaragua, Costa Rica and Panama to the southeast, a prime study object. We present a comprehensive (major and trace element and Sr-Nd-Pb-Hf isotope data) and consistent (all data generated in the same labs using the same methods and data reduction procedures) compilation of published and unpublished Holocene mafic volcanic rocks sampled along the entire arc. New data include Sr and, for the first time, Hf isotope data from the entire CAVA as well as major and trace element data for 43 samples from southern Nicaragua and central Costa Rica from which only isotopic compositions were previously published. The combined elemental and isotopic data confirm the influence of distinct subduction components on the composition of CAVA magmas. Along-arc geochemical variations (especially delta 208Pb/204Pb) of volcanic front magmas in Costa Rica and Panama have been explained by the different compositions of seamounts/ridges of the isotopically zoned Galápagos hotspot track that covers the subducting Cocos Plate in this sector of the arc (Hoernle et al. 2008, Nature 451). Our new data confirm this relationship with arc lavas from Costa Rica having higher 87Sr/86Sr ratios than those from western Panama reflecting a similar spatial-compositional distinction in the subducting hotspot track beneath them. In contrast, 176Hf/177Hf shows no comparable variations in this sector of the arc, indicating that the Hf is primarily derived from the mantle wedge rather than the subducting slab. Although small degree hydrous melts are believed to fertilize the mantle wedge beneath Costa Rica, residual zircon may hold back the Hf.

Highly siderophile elements in chondrites

USGS Publications Warehouse

Horan, M.F.; Walker, R.J.; Morgan, J.W.; Grossman, J.N.; Rubin, A.E.

2003-01-01

The abundances of the highly siderophile elements (HSE), Re, Os, Ir, Ru, Pt and Pd, were determined by isotope dilution mass spectrometry for bulk samples of 13 carbonaceous chondrites, 13 ordinary chondrites and 9 enstatite chondrites. These data are coupled with corresponding 187Re-187Os isotopic data reported by Walker et al. [Geochim. Cosmochim. Acta, 2002] in order to constrain the nature and timing of chemical fractionation relating to these elements in the early solar system. The suite of chondrites examined displays considerable variations in absolute abundances of the HSE, and in the ratios of certain HSE. Absolute abundances of the HSE vary by nearly a factor of 80 among the chondrite groups, although most vary within a factor of only 2. Variations in concentration largely reflect heterogeneities in the sample aliquants. Different aliquants of the same chondrite may contain variable proportions of metal and/or refractory inclusions that are HSE-rich, and sulfides that are HSE-poor. The relatively low concentrations of the HSE in CI1 chondrites likely reflect dilution by the presence of volatile components. Carbonaceous chondrites have Re/Os ratios that are, on average, approximately 8% lower than ratios for ordinary and enstatite chondrites. This is also reflected in 187Os/188Os ratios that are approximately 3% lower for carbonaceous chondrites than for ordinary and enstatite chondrites. Given the similarly refractory natures of Re and Os, this fractionation may have occurred within a narrow range of high temperatures, during condensation of these elements from the solar nebula. Superimposed on this major fractionation are more modest movements of Re or Os that occurred within the last 0-2 Ga, as indicated by minor open-system behavior of the Re-Os isotope systematics of some chondrites. The relative abundances of other HSE can also be used to discriminate among the major classes of chondrites. For example, in comparison to the enstatite chondrites, carbonaceous and ordinary chondrites have distinctly lower ratios of Pd to the more refractory HSE (Re, Os, Ir, Ru and Pt). Differences are particularly well resolved for the EH chondrites that have Pd/Ir ratios that average more than 40% higher than for carbonaceous and ordinary chondrite classes. This fractionation probably occurred at lower temperatures, and may be associated with fractionation processes that also affected the major refractory lithophile elements. Combined, 187Os/188Os ratios and HSE ratios reflect unique early solar system processing of HSE for each major chondrite class. ?? 2002 Elsevier Science B.V. All rights reserved.

Screening of MITF and SOX10 Regulatory Regions in Waardenburg Syndrome Type 2

PubMed Central

Baral, Viviane; Chaoui, Asma; Watanabe, Yuli; Goossens, Michel; Attie-Bitach, Tania; Marlin, Sandrine; Pingault, Veronique; Bondurand, Nadege

2012-01-01

Waardenburg syndrome (WS) is a rare auditory-pigmentary disorder that exhibits varying combinations of sensorineural hearing loss and pigmentation defects. Four subtypes are clinically defined based on the presence or absence of additional symptoms. WS type 2 (WS2) can result from mutations within the MITF or SOX10 genes; however, 70% of WS2 cases remain unexplained at the molecular level, suggesting that other genes might be involved and/or that mutations within the known genes escaped previous screenings. The recent identification of a deletion encompassing three of the SOX10 regulatory elements in a patient presenting with another WS subtype, WS4, defined by its association with Hirschsprung disease, led us to search for deletions and point mutations within the MITF and SOX10 regulatory elements in 28 yet unexplained WS2 cases. Two nucleotide variations were identified: one in close proximity to the MITF distal enhancer (MDE) and one within the U1 SOX10 enhancer. Functional analyses argued against a pathogenic effect of these variations, suggesting that mutations within regulatory elements of WS genes are not a major cause of this neurocristopathy. PMID:22848661

Apatite in carbonatitic rocks: Compositional variation, zoning, element partitioning and petrogenetic significance

NASA Astrophysics Data System (ADS)

Chakhmouradian, Anton R.; Reguir, Ekaterina P.; Zaitsev, Anatoly N.; Couëslan, Christopher; Xu, Cheng; Kynický, Jindřich; Mumin, A. Hamid; Yang, Panseok

2017-03-01

Apatite-group phosphates are nearly ubiquitous in carbonatites, but our understanding of these minerals is inadequate, particularly in the areas of element partitioning and petrogenetic interpretation of their compositional variation among spatially associated rocks and within individual crystals. In the present work, the mode of occurrence, and major- and trace-element chemistry of apatite (sensu lato) from calcite and dolomite carbonatites, their associated cumulate rocks (including phoscorites) and hydrothermal parageneses were studied using a set of 80 samples from 50 localities worldwide. The majority of this set represents material for which no analytical data are available in the literature. Electron-microprobe and laser-ablation mass-spectrometry data ( 600 and 400 analyses, respectively), accompanied by back-scattered-electron and cathodoluminescence images and Raman spectra, were used to identify the key compositional characteristics and zoning patterns of carbonatitic apatite. These data are placed in the context of phosphorus geochemistry in carbonatitic systems and carbonatite evolution, and compared to the models proposed by previous workers. The documented variations in apatite morphology and zoning represent a detailed record of a wide range of evolutionary processes, both magmatic and fluid-driven. The majority of igneous apatite from the examined rocks is Cl-poor fluorapatite or F-rich hydroxylapatite (≥ 0.3 apfu F) with 0.2-2.7 wt.% SrO, 0-4.5 wt.% LREE2O3, 0-0.8 wt.% Na2O, and low levels of other cations accommodated in the Ca site (up to 1000 ppm Mn, 2300 ppm Fe, 200 ppm Ba, 150 ppm Pb, 700 ppm Th and 150 ppm U), none of which show meaningful correlation with the host-rock type. Silicate, (SO4)2 - and (VO4)3 - anions, substituting for (PO4)3 -, tend to occur in greater abundance in crystals from calcite carbonatites (up to 4.2 wt.% SiO2, 1.5 wt.% SO3 and 660 ppm V). Although (CO3)2 - groups are very likely present in some samples, Raman micro-spectroscopy proved inconclusive for apatites with small P-site deficiencies and other substituent elements in this site. Indicator REE ratios sensitive to redox conditions (δCe, δEu) and hydrothermal overprint (δY) form a fairly tight cluster of values (0.8-1.3, 0.8-1.1 and 0.6-0.9, respectively) and may be used in combination with trace-element abundances for the development of geochemical exploration tools. Hydrothermal apatite forms in carbonatites as the product of replacement of primary apatite, or is deposited in fractures and interstices as euhedral crystals and aggregates associated with typical late-stage minerals (e.g., quartz and chlorite). Hydrothermal apatite is typically depleted in Sr, REE, Mn and Th, but enriched in F (up to 4.8 wt.%) relative to its igneous precursor, and also differs from the latter in at least some of key REE ratios [e.g., shows (La/Yb)cn ≤ 25, or a negative Ce anomaly]. The only significant exception is Sr(± REE,Na)-rich replacement zones and overgrowths on igneous apatite from some dolomite(-bearing) carbonatites. Their crystallization conditions and source fluid appear to be very different from the more common Sr-REE-depleted variety. Based on the new evidence presented in this work, trace-element partitioning between apatite and carbonatitic magmas, phosphate solubility in these magmas, and compositional variation of apatite-group minerals from spatially associated carbonatitic rocks are critically re-evaluated.

Assimilation by lunar mare basalts: Melting of crustal material and dissolution of anorthite

NASA Astrophysics Data System (ADS)

Finnila, A. B.; Hess, P. C.; Rutherford, M. J.

1994-07-01

We discuss techniques for calculating the amount of crustal assimilation possible in lunar magma chambers and dikes based on thermal energy balances, kinetic rates, and simple fluid mechanical constraints. Assuming parent magmas of picritic compositions, we demonstrate the limits on the capacity of such magmas to melt and dissolve wall rock of anorthitic, troctolitic, noritic, and KREEP (quartz monzodiorite) compositions. Significant melting of the plagioclase-rich crustal lithologies requires turbulent convection in the assimilating magma and an efficient method of mixing in the relatively buoyant and viscous new melt. Even when this occurs, the major element chemistry of the picritic magmas will change by less than 1-2 wt %. Diffusion coefficients measured for Al2O3 from an iron-free basalt and an orange glass composition are 10-12 sq m/s at 1340 C and 10-11 sq m/s at 1390 C. These rates are too slow to allow dissolution of plagioclase to significantly affect magma compositions. Picritic magmas can melt significant quantities of KREEP, which suggests that their trace element chemistry may still be affected by assimilation processes; however, mixing viscous melts of KREEP composition with the fluid picritic magmas could be prohibitively difficult. We conclude that only a small part of the total major element chemical variation in the mare basalt and volcanic glass collection is due to assimilation/fractional crystallization processes near the lunar surface. Instead, most of the chemical variation in the lunar basalts and volcanic glasses must result from assimilation at deeper levels or from having distinct source regions in a heterogeneous lunar mantle.

Assimilation by lunar mare basalts: Melting of crustal material and dissolution of anorthite

NASA Technical Reports Server (NTRS)

Finnila, A. B.; Hess, P. C.; Rutherford, M. J.

1994-01-01

We discuss techniques for calculating the amount of crustal assimilation possible in lunar magma chambers and dikes based on thermal energy balances, kinetic rates, and simple fluid mechanical constraints. Assuming parent magmas of picritic compositions, we demonstrate the limits on the capacity of such magmas to melt and dissolve wall rock of anorthitic, troctolitic, noritic, and KREEP (quartz monzodiorite) compositions. Significant melting of the plagioclase-rich crustal lithologies requires turbulent convection in the assimilating magma and an efficient method of mixing in the relatively buoyant and viscous new melt. Even when this occurs, the major element chemistry of the picritic magmas will change by less than 1-2 wt %. Diffusion coefficients measured for Al2O3 from an iron-free basalt and an orange glass composition are 10(exp -12) sq m/s at 1340 C and 10(exp -11) sq m/s at 1390 C. These rates are too slow to allow dissolution of plagioclase to significantly affect magma compositions. Picritic magmas can melt significant quantities of KREEP, which suggests that their trace element chemistry may still be affected by assimilation processes; however, mixing viscous melts of KREEP composition with the fluid picritic magmas could be prohibitively difficult. We conclude that only a small part of the total major element chemical variation in the mare basalt and volcanic glass collection is due to assimilation/fractional crystallization processes near the lunar surface. Instead, most of the chemical variation in the lunar basalts and volcanic glasses must result from assimilation at deeper levels or from having distinct source regions in a heterogeneous lunar mantle.

Sensitivity analysis of free vibration characteristics of an in situ railway concrete sleeper to variations of rail pad parameters

NASA Astrophysics Data System (ADS)

Kaewunruen, Sakdirat; Remennikov, Alex M.

2006-11-01

The vibration of in situ concrete sleepers in a railway track structure is a major factor causing cracking of prestressed concrete sleepers and excessive railway track maintenance cost. Not only does the ballast interact with the sleepers, but the rail pads also take part in affecting their free vibration characteristics. This paper presents a sensitivity analysis of free vibration behaviors of an in situ railway concrete sleeper (standard gauge sleeper), incorporating sleeper/ballast interaction, subjected to the variations of rail pad properties. Through finite element analysis, Timoshenko-beam and spring elements were used in the in situ railway concrete sleeper modeling. This model highlights the influence of rail pad parameters on the free vibration characteristics of in situ sleepers. In addition, information on the first five flexural vibration modes indicates the dynamic performance of railway track when using different types of rail pads, as it plays a vital role in the cracking deterioration of concrete sleepers.

Geochemical and Depth Variations at the Galápagos 93.25˚W Propagating Rift

NASA Astrophysics Data System (ADS)

Rotella, M.; Sinton, J.; Mahoney, J.; Chazey, W.

2006-12-01

The 93.25°W propagating rift on the Galápagos Spreading Center (GSC) differs markedly from the better-known propagator at 95.5°W in having the morphology of a classic overlapping spreading center (~24 km of overlap and 7.5 km of offset). It has a higher propagation rate (70 vs 48 mm/yr) [Wilson & Hey, JGR v. 100, 1995] and is breaking through younger crust (260 vs 910 ka); overall magma supply is ~20% greater, as the area is closer to the Galápagos hotspot. The overlapping limbs lack pronounced bathymetric lows, instead they are up to 150 m shallower than the surrounding axial ridges away from the offset. Lavas are T-MORB; failing rift lavas show a slight increase in Mg within the overlap zone but propagating rift lavas lack the strong fractionation anomaly that characterizes the propagating limb at 95.5°W and many other propagating rifts. New major and trace element data on 28 samples from 24 dredge stations along a 175 km section of the GSC spanning the 93.25°W offset indicate significant, systematic variations in mantle sources and melting processes on each limb of the system. Fractionation-corrected ratios of highly to moderately incompatible elements (e.g. La/Yb, Sm/Yb, Zr/Y) show constant values along the propagating rift east of 93.2°W, but within the overlap zone these ratios increase sharply up to a factor of 1.5, then gradually decline to the west. In contrast, the failing rift shows constant to moderately increasing ratios as the overlap zone is approached from the west, with lower overall ratios within the zone. These variations could be interpreted to reflect a counter-intuitive relationship of gradually increasing extent of partial melting with progressive failure of the dying rift, consistent with the striking shoaling of the failing limb, or melting of incompatible-element depleted mantle. Variations along the eastern, propagating rift suggest either a sharp decrease in extent of melting or tapping of a more incompatible-element-enriched mantle source within the overlap zone. Limited Nd-Pb-Sr isotopic data suggest source variations are required in addition to variations in extent of melting. Thus, in contrast to other well-documented propagators where geochemical variations are dominated by magma chamber effects, variations around the 93.25°W system appear to be dominated by melting and source.

Geochemistry and mineralogy of fly-ash from the Mae Moh lignite deposit, Thailand

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hart, B.R.; Powell, M.A.; Fyfe, W.S.

The concentration of 21 elements in fly ash from three boilers (75 MW, 150 MW, and 300 MW) at the EGAT power plant, Mae Moh, Thailand, were determined by INAA. The concentration of 10 major elements was determined by XRF. As, Co, Cr, Ni, Mo, and Sb generally increase in concentration going from bottom ash (BA) through the sequence of electrostatic precipitator ashes (ESPA) and reach maxima of As (352 ppm), Co (45 ppm), Cr (105 ppm), Mo (32 ppm), Ni (106 ppm), and Sb (15 ppm) in the ESPA. Ce, Cs, Fe, Hf, La, Sc, Ta, Tb, and Ybmore » did not exhibit concentration trends or are variable except in the case of one boiler, which showed an increase going from BA to ESPA. Only Br decreased in composition going from BA to ESPA. Rb, Sm, U, and Th showed marked variation in trends. The major elements identified by EDS were Al, Si, S, K, Ca, Fe, and Ba, with minor amounts of Mg, Na, Ti, Mn, and Sr. Al, Si, K, and Ca occur together and are present in most of the fly-ash particles. Ba was found as a major component with Ca, Al, and Si. Fe and Ca are usually associated with sulfur. Some small spheres (< 5 {mu}m) are comprised almost entirely of Fe (probably as oxide). Symplectite textures are noted in high-Fe phases. All elements except Br are significantly enriched in the fly ash relative to the coal, which contains 35% ash. Particle chemistry is consistent with the major mineral phases identified by XRD, which include: quartz, magnetite, mullite, gehlenite, anorthite, hematite, anhydrite, and clinopyroxene.« less

Fine-scale traverses in cumulate rocks, Stillwater Complex: A lunar analogue study

NASA Technical Reports Server (NTRS)

Elthon, Donald

1988-01-01

The objective was to document finite-scale compositional variations in cumulate rocks from the Stillwater Complex in Montana and to interpret these data in the context of planetary magma fractionation processes such as those operative during the formation of the Earth's Moon. This research problem involved collecting samples in the Stillwater Complex and analyzing them by electron microprobe, X-ray fluorescence (XRF), and instrumental neutron activation analysis (INAA). The electron microprobe is used to determine the compositions of cumulus and intercumulus phases in the rocks, the XRF is used to determine the bulk-rock major element and trace element (Y, Sr, Rb, Zr, Ni, and Cr) abundances, and the INAA lab. is used to determine the trace element (Sc, Co, Cr, Ni, Ta, Hf, U, Th, and the REE) abundances of mineral separates and bulk rocks.

Effects of sea-level changes on mid-ocean ridge magmatism and implications for emission rates of carbon.

NASA Astrophysics Data System (ADS)

Cerpa, N.; Katz, R. F.; Keller, T.

2017-12-01

Glacial cycles move water between ice sheets and the ocean, and hence cause regional pressure changes in the solid Earth. The rate of sea-level (SL) change during this cycle is comparable to the rate of mantle upwelling beneath mid-ocean ridges (MORs), and hence we expect the induced pressure variations to modify the rate and depth of silicate melting. SL variations may therefore induce changes in the supply and composition of magma at MORs, which could affect the flux of carbon into the climate system. Likewise, the trace-element geochemistry of magmas tapped by ridge volcanism may vary during these cycles due to variations in melt flux. Such variations may have been recorded by sediment-hosted volcanic glass fragments [Ferguson et al., 2017]. We investigate these questions using computational models of melt production and transport in which volatiles participate in the thermodynamics of melting. Published models of the effect of SL on MORs predict up to 10% variation in carbon emission rates for absolute changes in SL of 50-100 m with possible lag times of several tens of kyrs [Burley et al., 2015; Hasenclever et al., 2017]. A major assumption of those models is that water and carbon are passive, incompatible elements. But small concentrations of those volatiles affect the solidus of mantle peridotite and increase the volume of upper mantle undergoing partial melting. Hence the current predictions of variation in MOR carbon emission might be an underestimate. Moreover, published models neglect the effects of volatiles on melt transport. Recents studies have demonstrated that volatiles can induce channelized transport [Keller and Katz 2016], potentially affecting the rate at which carbon is extracted from the mantle. In this study, we investigate the interplay between SL variations, melting, and segregation of volatile-rich melts. We use two-phase magma/mantle dynamics coupled to melting models that treat water and carbon dioxide as thermodynamic components. We compare models of equilibrium and disequilibrium melting to assess the influence of reaction kinetics on magma productivity at MORs during SL variations. Our calculations provide new estimates of the lag and amplitude of carbon emissions during glacial cycles. We address the impact of SL variations on the trace-element composition of magmas.

Whole body-element composition of Atlantic salmon Salmo salar influenced by migration direction and life stage in three distinct populations.

PubMed

Ebel, J D; Leroux, S J; Robertson, M J; Dempson, J B

2016-11-01

Body-element content was measured for three life stages of wild Atlantic salmon Salmo salar from three distinct Newfoundland populations as individuals crossed between freshwater and marine ecosystems. Life stage explained most of the variation in observed body-element concentration whereas river of capture explained very little variation. Element composition of downstream migrating post-spawn adults (i.e. kelts) and juvenile smolts were similar and the composition of these two life stages strongly differed from adults migrating upstream to spawn. Low variation within life stages and across populations suggests that S. salar may exert rheostatic control of their body-element composition. Additionally, observed differences in trace element concentration between adults and other life stages were probably driven by the high carbon concentration in adults because abundant elements, such as carbon, can strongly influence the observed concentrations of less abundant elements. Thus, understanding variation among individuals in trace elements composition requires the measurement of more abundant elements. Changes in element concentration with ontogeny have important consequences the role of fishes in ecosystem nutrient cycling and should receive further attention. © 2016 The Fisheries Society of the British Isles.

Radionuclides at Descartes in the central highlands

NASA Technical Reports Server (NTRS)

Wrigley, R. C.

1973-01-01

Throium, uranium, potassium, aluminium-26, and sodium-22 were measured by nondestructive gamma ray spectrometry in six soil and two rock samples gathered by Apollo 16 in the lunar central highlands. The soil samples probably include both major geologic formations in the vicinity, the Cayley and Descartes Formations, although it is possible that the Descartes Formation is not represented. The rock samples have low concentrations of primordial radionuclides. The Al concentrations were lower than could be expected from the high abundance of alumina in the Apollo 16 soils reported earlier, but this could be due to lower concentrations of target elements in these soils, sampling depth variations, or regolithic mixing (exposure age variations).

Chemical disorder as an engineering tool for spin polarization in Mn3Ga -based Heusler systems

NASA Astrophysics Data System (ADS)

Chadov, S.; D'Souza, S. W.; Wollmann, L.; Kiss, J.; Fecher, G. H.; Felser, C.

2015-03-01

Our study highlights spin-polarization mechanisms in metals by focusing on the mobilities of conducting electrons with different spins instead of their quantities. Here, we engineer electron mobility by applying chemical disorder induced by nonstoichiometric variations. As a practical example, we discuss the scheme that establishes such variations in tetragonal Mn3Ga Heusler material. We justify this approach using first-principles calculations of the spin-projected conductivity components based on the Kubo-Greenwood formalism. It follows that, in the majority of cases, even a small substitution of some other transition element instead of Mn may lead to a substantial increase in spin polarization along the tetragonal axis.

Origin of major element chemical trends in DSDP Leg 37 basalts, Mid-Atlantic Ridge

USGS Publications Warehouse

Byerly, G.R.; Wright, T.L.

1978-01-01

In this paper we summarize the major element chemical variation for basalts from the Deep Sea Drilling Project Leg 37 and relate it to stratigraphic position in each of five drilling sites. Least-squares techniques are successfully used to quantify the nature and extent of alteration in these basalts, and to correct the major element analysis back to a magmatic, or alteration-free, composition on the assumption that alteration takes place in two ways: (1) secondary minerals are introduced into veins and vesicles, and (2) CO2 and H2O react with components in the rock to form a simple alteration assemblage. A chemical stratigraphy is defined for these basalts by grouping lavas whose chemistries are related by low-pressure phenocryst-liquid differentiation as identified by least-squares calculation. Major chemical-stratigraphic units are as much as 200 m thick; correlations of these units can be made between the holes at site 332 (about 100 m apart), but not between the other sites. Compositions of parental magmas are calculated by extrapolating low-pressure variations to a constant value of 9% MgO. The differences in these extrapolated compositions reflect high-pressure processes, and suggest that clinopyroxene may be an important phase in either intermediate-level fractionation of basaltic liquids, or as a residual phase during the partial melting which produces these basaltic liquids. Several of the basaltic liquids calculated as parental to the Leg 37 basalts have CaO contents greater than 14% and indicate that the oceanic mantle is richer in CaO and Al2O3 than values used in pyrolite models for the upper mantle. A model for magma generation and eruption beneath the Mid-Atlantic Ridge embodies the following characteristics: 1. (1) Separate magma batches are generated in the mantle. 2. (2) Each of these may be erupted directly or stored at shallow depth where significant fractionation takes place. Common fractionation processes are inferred to be gravitative settling of olivine, flotation (?) of plagioclase, and flow differentiation of an olivine-plagioclase-augite assemblage. 3. (3) Eruption of fractionated lava derived from earlier magma batches may alternate with eruption of younger less-fractionated or unfractionated magma. ?? 1978.

Mixing as a driver of temporal variations in river hydrochemistry: 1. Insights from conservative tracers in the Andes-Amazon transition

NASA Astrophysics Data System (ADS)

Torres, Mark A.; Baronas, J. Jotautas; Clark, Kathryn E.; Feakins, Sarah J.; West, A. Joshua

2017-04-01

The response of hillslope processes to changes in precipitation may drive the observed changes in the solute geochemistry of rivers with discharge. This conjecture is most robust when variations in the key environmental factors that affect hillslope processes (e.g., lithology, erosion rate, and climate) are minimal across a river's catchment area. For rivers with heterogenous catchments, temporal variations in the relative contributions of different tributary subcatchments may modulate variations in solute geochemistry with runoff. In the absence of a dense network of hydrologic gauging stations, alternative approaches are required to distinguish between the different drivers of temporal variability in river solute concentrations. In this contribution, we apportion the water and solute fluxes of a reach of the Madre de Dios River (Peru) between its four major tributary subcatchments during two sampling campaigns (wet and dry seasons) using spatial variations in conservative tracers. Guided by the results of a mixing model, we identify temporal variations in solute concentrations of the main stem Madre de Dios that are due to changes in the relative contributions of each tributary. Our results suggest that variations in tributary mixing are, in part, responsible for the observed concentration-discharge (C-Q) relationships. The implications of these results are further explored by reanalyzing previously published C-Q data from this region, developing a theoretical model of tributary mixing, and, in a companion paper, comparing the C-Q behavior of a suite of major and trace elements in the Madre de Dios River system.

Volatile element content of the heterogeneous upper mantle

NASA Astrophysics Data System (ADS)

Shimizu, K.; Saal, A. E.; Hauri, E. H.; Forsyth, D. W.; Kamenetsky, V. S.; Niu, Y.

2014-12-01

The physical properties of the asthenosphere (e.g., seismic velocity, viscosity, electrical conductivity) have been attributed to either mineral properties at relevant temperature, pressure, and water content or to the presence of a low melt fraction. We resort to the geochemical studies of MORB to unravel the composition of the asthenosphere. It is important to determine to what extent the geochemical variations in axial MORB do represent a homogeneous mantle composition and variations in the physical conditions of magma generation and transport; or alternatively, they represent mixing of melts from a heterogeneous upper mantle. Lavas from intra-transform faults and off-axis seamounts share a common mantle source with axial MORB, but experience less differentiation and homogenization. Therefore they provide better estimates for the end-member volatile budget of the heterogeneous upper mantle. We present major, trace, and volatile element data (H2O, CO2, Cl, F, S) as well as Sr, Nd, and Pb isotopic compositions [1, 2] of basaltic glasses (MgO > 6.0 wt%) from the NEPR seamounts, Quebrada-Discovery-Gofar transform fault system, and Macquarie Island. The samples range from incompatible trace element (ITE) depleted (DMORB: Th/La<0.035) to enriched (EMORB: Th/La>0.07) spanning the entire range of EPR MORB. The isotopic composition of the samples correlates with the degree of trace element enrichment indicating long-lived mantle heterogeneity. Once shallow-level processes (degassing, crystallization, and crustal assimilation) have been considered, we conducted a two-component (DMORB- and EMORB-) mantle melting-mixing model. Our model reproduces the major, trace and volatile element contents and isotopic composition of our samples and suggests that (1) 90% of the upper mantle is highly depleted in ITE (DMORB source) with only 10% of an enriched component (EMORB source), (2) the EMORB source is peridotitic rather than pyroxenitic, and (3) NMORB do not represent an actual mantle source, but the product of magma mixing between D- and E-MORB. Finally we use the volatile to trace element ratios of our samples to estimate the volatile element budget of the end-member components of the upper mantle. [1] Niu, Y. et al. (2002) EPSL, 199, 327-345. [2] Kamenetsky, V. S. et al. (2000) J. Petrology, 41, 411-430.

Spatial and temporal variations of the particulate size distribution and chemical composition over Ibadan, Nigeria.

PubMed

Akinlade, Grace O; Olaniyi, Hezekiah B; Olise, Felix S; Owoade, Oyediran K; Almeida, Susana M; Almeida-Silva, Marina; Hopke, Philip K

2015-08-01

Spatial and temporal variation of suspended particulate matter was measured in Ibadan, Nigeria during the raining and dry months of 2013 and 2014, respectively. Six different locations were considered, reflecting city-spread, population density, lifestyle, and vehicular- and industrial-related activities. Elemental characterisation of the samples were carried out using energy dispersive x-ray fluorescence (ED-XRF) spectroscopy, while the black carbon content was determined using an optical transmissometer. Backward trajectory analysis indicated that most air mass was of maritime origin except on few occasions that suggested the Sahara desert origin. Average PM2.5/PM10 ratio for the entire sampling period was 0.32 ± 0.04. This is slightly lower than the reported values in the coastal city of Lagos, partly because of more adequately paved and better road networks resulting in lower dust re-suspension and/or there are relatively finer fraction particulates from other sources, which might include marine, industrial, and secondary emission-related sources. Black carbon showed predominance in the fine fractions and was, majorly, of traffic origin. Major enriched elements of concern are S, Zn, As, and Pb aside from those of sea origin. Refuse burning was observed to be the principal source of Pb and Zn in all the sites except one, which showed major industrial-related activities source. This study will provide data for future measurement and modelling works as well as providing a benchmark for relevant agencies for policy making on setting emission standards for the country.

Magma batches in the Timber Mountain magmatic system, Southwestern Nevada Volcanic Field, Nevada, USA

NASA Astrophysics Data System (ADS)

Mills, James G.; Saltoun, Benjamin W.; Vogel, Thomas A.

1997-09-01

The common occurrence of compositionally and mineralogically zoned ash flow sheets, such as those of the Timber Mountain Group, provides evidence that the source magma bodies were chemically and thermally zoned. The Rainier Mesa and Ammonia Tanks tuffs of the Timber Mountain Group are both large volume (1200 and 900 km 3, respectively) chemically zoned (57-78 wt.% SiO 2) ash flow sheets. Evidence of distinct magma batches in the Timber Mountain system are based on: (1) major- and trace-element variations of whole pumice fragments; (2) major-element variations in phenocrysts; (3) major-element variations in glass matrix; and (4) emplacement temperatures calculated from Fe-Ti oxides and feldspars. There are three distinct groups of pumice fragments in the Rainier Mesa Tuff: a low-silica group and two high-silica groups (a low-Th and a high-Th group). These groups cannot be related by crystal fractionation. The low-silica portion of the Rainier Mesa Tuff is distinct from the low-silica portion of the overlying Ammonia Tanks Tuff, even though the age difference is less than 200,000 years. Three distinct groups occur in the Ammonia Tanks Tuff: a low-silica, intermediate-silica and a high-silica group. Part of the high-silica group may be due to mixing of the two high-silica Rainier Mesa groups. The intermediate-silica group may be due to mixing of the low- and high-silica Ammonia Tanks groups. Three distinct emplacement temperatures occur in the Rainier Mesa Tuff (869, 804, 723 °C) that correspond to the low-silica, high-Th and low-Th magma batches, respectively. These temperature differences could not have been maintained for any length of time in the magma chamber (cf. Turner, J.S., Campbell, I.H., 1986. Convection and mixing in magma chambers. Earth-Sci. Rev. 23, 255-352; Martin, D., Griffiths, R.W., Campbell, I.H., 1987. Compositional and thermal convection in magma chambers. Contrib. Mineral. Petrol. 96, 465-475) and therefore eruption must have occurred soon after emplacement of the magma batches into the chamber. Emplacement temperatures of the pumice fragments from the Ammonia Tanks Tuff show a continuous gradient of temperatures with composition. This continuous temperature gradient is consistent with the model of storage of magma batches in the Ammonia Tanks group that have undergone both thermal and chemical diffusion.

The geochemistry of environmentally important trace elements in UK coals, with special reference to the Parkgate coal in the Yorkshire-Nottinghamshire Coalfield, UK

USGS Publications Warehouse

Spears, D.A.; Tewalt, S.J.

2009-01-01

The Parkgate coal of Langsettian age in the Yorkshire-Nottinghamshire coalfield is typical of many coals in the UK in that it has a high sulphur (S) content. Detailed information on the distribution of the forms of S, both laterally and vertically through the seam, was known from previous investigations. In the present work, 38 interval samples from five measured sections of the coal were comprehensively analysed for major, minor and trace elements and the significance of the relationships established using both raw and centered log transformed data. The major elements are used to quantify the variations in the inorganic and organic coal components and determine the trace element associations. Pyrite contains nearly all of the Hg, As, Se, Tl and Pb and is also the major source of the Mo, Ni, Cd and Sb. The clays contain the following elements in decreasing order of association: Rb, Cs, Li, Ga, U, Cr, V, Sc, Y, Bi, Cu, Nb, Sn, Te and Th. Nearly all of the Rb is present in the clay fraction, whereas for elements such as V, Cu and U, a significant amount is thought to be present in the organic matter, based on the K vs trace element regression equations. Only Ge, and possibly Be, would appear to have a dominant organic source. The trace element concentrations are calculated for pyrite, the clay fraction and organic matter. For pyrite it is noted that concentrations agree with published data from the Yorkshire-Nottinghamshire coalfield and also that Tl concentrations (median of 0.33 ppm) in the pyrite are greater than either Hg or Cd. Unlike these elements, Tl has attracted less attention and possibly more information is needed on its anthropogenic distribution and impacts on man and the environment. A seawater source is thought to be responsible for the high concentrations of S, Cl and the non-detrital trace elements in the Parkgate coal. Indicative of the seawater control is the Th/U ratio, which expresses the detrital to non-detrital element contributions. Using other elements, similar ratios can be calculated, which in combination offer greater interpretative value. ?? 2009 Elsevier B.V.

Application of variational and Galerkin equations to linear and nonlinear finite element analysis

NASA Technical Reports Server (NTRS)

Yu, Y.-Y.

1974-01-01

The paper discusses the application of the variational equation to nonlinear finite element analysis. The problem of beam vibration with large deflection is considered. The variational equation is shown to be flexible in both the solution of a general problem and in the finite element formulation. Difficulties are shown to arise when Galerkin's equations are used in the consideration of the finite element formulation of two-dimensional linear elasticity and of the linear classical beam.

Developments in variational methods for high performance plate and shell elements

NASA Technical Reports Server (NTRS)

Felippa, Carlos A.; Militello, Carmelo

1991-01-01

High performance elements are simple finite elements constructed to deliver engineering accuracy with coarse arbitrary grids. This is part of a series on the variational foundations of high-performance elements, with emphasis on plate and shell elements constructed with the free formulation (FF) and assumed natural strain (ANS) methods. Parameterized variational principles are studied that provide a common foundation for the FF and ANS methods, as well as for a combination of both. From this unified formulation a variant of the ANS formulation, called the assumed natural deviatoric strain (ANDES) formulation, emerges as an important special case. The first ANDES element, a high-performance 9 degrees of freedom triangular Kirchhoff plate bending element, is briefly described to illustrate the use of the new formulation.

Nutrient elements in large Chinese estuaries

NASA Astrophysics Data System (ADS)

Zhang, Jing

1996-07-01

Based on comprehensive observations since 1983, this study summarizes major features of nutrient elements (nitrogen, phosphorus and silicon) in large Chinese river/estuary systems. Elevated nutrient element levels were observed in Chinese rivers, when compared to large and less disturbed aquatic systems (e.g. the Amazon, Zaire and Orinoco). Data from this study are similar to those obtained from the polluted and/or eutrophic rivers in Europe and North America (e.g. the Rhóne and Loire). Nutrient elements may have either conservative or active distributions, or both, in the mixing zone, depending on the element and the estuary. For example, non-conservative behaviors were observed in the upper estuary, where nutrient elements may be remobilized due to the strong desorption and variations of the fresh water end-member, but conservative distributions were found afterwards in the lower estuary. Outside the riverine effluent plumes, nutrient elements may be depleted in surface waters relative to elevated bioproduction, whereas the regeneration with respect to decomposition of organic material and/or nitrification/denitrification offshore, may sustain high levels of nutrient elements in near-bottom waters. Laboratory experiment data generally compares well with field observations. The high fluxes and area] yields of nutrient elements from large Chinese rivers, indicate the extensive use of chemical fertilizers and domestic waste drainage over watersheds in China.

A combined basalt and peridotite perspective on 14 million years of melt generation at the Atlantis Bank segment of the Southwest Indian Ridge: Evidence for temporal changes in mantle dynamics?

USGS Publications Warehouse

Coogan, L.A.; Thompson, G.M.; MacLeod, C.J.; Dick, H.J.B.; Edwards, S.J.; Hosford, Scheirer A.; Barry, T.L.

2004-01-01

Little is known about temporal variations in melt generation and extraction at midocean ridges largely due to the paucity of sampling along flow lines. Here we present new whole-rock major and trace element data, and mineral and glass major element data, for 71 basaltic samples (lavas and dykes) and 23 peridotites from the same ridge segment (the Atlantis Bank segment of the Southwest Indian Ridge). These samples span an age range of almost 14 My and, in combination with the large amount of published data from this area, allow temporal variations in melting processes to be investigated. Basalts show systematic changes in incompatible trace element ratios with the older samples (from ???8-14 Ma) having more depleted incompatible trace element ratios than the younger ones. There is, however, no corresponding change in peridotite compositions. Peridotites come from the top of the melting column, where the extent of melting is highest, suggesting that the maximum degree of melting did not change over this interval of time. New and published Nd isotopic ratios of basalts, dykes and gabbros from this segment suggest that the average source composition has been approximately constant over this time interval. These data are most readily explained by a model in which the average source composition and temperature have not changed over the last 14 My, but the dynamics of mantle flow (active-to-passive) or melt extraction (less-to-more efficient extraction from the 'wings' of the melting column) has changed significantly. This hypothesised change in mantle dynamics occurs at roughly the same time as a change from a period of detachment faulting to 'normal' crustal accretion. We speculate that active mantle flow may impart sufficient shear stress on the base of the lithosphere to rotate the regional stress field and promote the formation of low angle normal faults. ?? 2004 Elsevier B.V. All rights reserved.

Search for a meteoritic component at the Beaverhead impact structure, Montana

NASA Technical Reports Server (NTRS)

Lee, Pascal; Kay, Robert W.

1992-01-01

The Beaverhead impact structure, in southwestern Montana, was identified recently by the presence of shatter cones and impactites in outcrops of Proterozoic sandstones of the Belt Supergroup. The cones occur over an area greater than 100 sq km. Because the geologic and tectonic history of this region is long and complex, the outline of the original impact crater is no longer identifiable. The extent of the area over which shatter cones occur suggests, however, that the feature may have been at least 60 km in diameter. The absence of shatter cones in younger sedimentary units suggests that the impact event occurred in late Precambrian or early Paleozoic time. We have collected samples of shocked sandstone from the so-called 'Main Site' of dark-matrix breccias, and of impact breccias and melts from the south end of Island Butte. The melts, occurring often as veins through brecciated sandstone, exhibit a distinctive fluidal texture, a greenish color, and a cryptocrystalline matrix, with small inclusions of deformed sandstone. Samples of the same type, along with country rock, were analyzed previously for major- and trace-element abundances. It was found that, although the major-element composition as relatively uniform, trace-element composition showed variations between the melt material and the adjacent sandstone. These variations were attributed to extensive weathering and hydrothermal alteration. In a more specific search for a possible meteoritic signature in the breccia and the melt material we have conducted a new series of trace-element analyses on powders of our own samples by thermal neutron activation analysis. Our results indicate that Ir abundances in the breccia, the melts, and the adjacent sandstone clasts are no greater than about 0.1 ppb, suggesting no Ir enrichment of the breccia or the melts relative to the country rock. However, both the breccia and the melt material exhibit notable enrichments in Cr (8- and 10-fold), in U (9- and 5-fold), and in the heavy REE's (1.5- and 3-fold), respectively.

The Surtsey Magma Series.

PubMed

Schipper, C Ian; Jakobsson, Sveinn P; White, James D L; Michael Palin, J; Bush-Marcinowski, Tim

2015-06-26

The volcanic island of Surtsey (Vestmannaeyjar, Iceland) is the product of a 3.5-year-long eruption that began in November 1963. Observations of magma-water interaction during pyroclastic episodes made Surtsey the type example of shallow-to-emergent phreatomagmatic eruptions. Here, in part to mark the 50(th) anniversary of this canonical eruption, we present previously unpublished major-element whole-rock compositions, and new major and trace-element compositions of sideromelane glasses in tephra collected by observers and retrieved from the 1979 drill core. Compositions became progressively more primitive as the eruption progressed, with abrupt changes corresponding to shifts between the eruption's four edifices. Trace-element ratios indicate that the chemical variation is best explained by mixing of different proportions of depleted ridge-like basalt, with ponded, enriched alkalic basalt similar to that of Iceland's Eastern Volcanic Zone; however, the systematic offset of Surtsey compositions to lower Nb/Zr than other Vestmannaeyjar lavas indicates that these mixing end members are as-yet poorly contained by compositions in the literature. As the southwestern-most volcano in the Vestmannaeyjar, the geochemistry of the Surtsey Magma Series exemplifies processes occurring within ephemeral magma bodies on the extreme leading edge of a propagating off-axis rift in the vicinity of the Iceland plume.

Isotope-abundance variations of selected elements (IUPAC technical report)

USGS Publications Warehouse

Coplen, T.B.; Böhlke, J.K.; De Bievre, P.; Ding, T.; Holden, N.E.; Hopple, J.A.; Krouse, H.R.; Lamberty, A.; Peiser, H.S.; Revesz, K.; Rieder, S.E.; Rosman, K.J.R.; Roth, E.; Taylor, P.D.P.; Vocke, R.D.; Xiao, Y.K.

2002-01-01

Documented variations in the isotopic compositions of some chemical elements are responsible for expanded uncertainties in the standard atomic weights published by the Commission on Atomic Weights and Isotopic Abundances of the International Union of Pure and Applied Chemistry. This report summarizes reported variations in the isotopic compositions of 20 elements that are due to physical and chemical fractionation processes (not due to radioactive decay) and their effects on the standard atomic-weight uncertainties. For 11 of those elements (hydrogen, lithium, boron, carbon, nitrogen, oxygen, silicon, sulfur, chlorine, copper, and selenium), standard atomic-weight uncertainties have been assigned values that are substantially larger than analytical uncertainties because of common isotope-abundance variations in materials of natural terrestrial origin. For 2 elements (chromium and thallium), recently reported isotope-abundance variations potentially are large enough to result in future expansion of their atomic-weight uncertainties. For 7 elements (magnesium, calcium, iron, zinc, molybdenum, palladium, and tellurium), documented isotope variations in materials of natural terrestrial origin are too small to have a significant effect on their standard atomic-weight uncertainties. This compilation indicates the extent to which the atomic weight of an element in a given material may differ from the standard atomic weight of the element. For most elements given above, data are graphically illustrated by a diagram in which the materials are specified in the ordinate and the compositional ranges are plotted along the abscissa in scales of (1) atomic weight, (2) mole fraction of a selected isotope, and (3) delta value of a selected isotope ratio.

Practice variation in the structure of stroke rehabilitation in four rehabilitation centres in the Netherlands.

PubMed

Groeneveld, Iris F; Meesters, Jorit J L; Arwert, Henk J; Roux-Otter, Nienke; Ribbers, Gerard M; van Bennekom, Coen A M; Goossens, Paulien H; Vliet Vlieland, Thea P M

2016-03-01

To describe practice variation in the structure of stroke rehabilitation in 4 specialized multidisciplinary rehabilitation centres in the Netherlands. A multidisciplinary expert group formulated a set of 23 elements concerning the structure of inpatient and outpatient stroke rehabilitation, categorized into 4 domains: admission-related (n = 7), treatment-related (n = 10), client involvement-related (n = 2), and facilities-related (n = 4). In a cross-sectional study in 4 rehabilitation centres data on the presence and content of these elements were abstracted from treatment programmes and protocols. In a structured expert meeting consensus was reached on the presence of practice variation per element. Practice variation was observed in 22 of the 23 structure elements. The element "strategies for patient involvement" appeared similar in all rehabilitation centres, whereas differences were found in the elements regarding admission, exclusion and discharge criteria, patient subgroups, care pathways, team meetings, clinical assessments, maximum time to admission, aftercare and return to work modules, health professionals, treatment facilities, and care-giver involvement. Practice variation was found in a wide range of aspects of the structure of stroke rehabilitation.

Geochemical Variation of Subducting Pacific Crust Along the Izu-Bonin Arc System and its Implications on the Generation of Arc Magmas

NASA Astrophysics Data System (ADS)

Durkin, K.; Castillo, P.; Abe, N.; Kaneko, R.; Straub, S. M.; Garcia, E. S. M.; Yan, Q.; Tamura, Y.

2015-12-01

Subduction zone magmatism primarily occurs due to flux melting of the mantle wedge that has been metasomatized by the slab component. The latter is enriched in volatiles and fluid-mobile elements and derived mainly from subducted sediments and altered oceanic crust (AOC). Subduction input has been linked to arc output in many studies, but this relationship is especially well documented in sedimented arc-trench systems. However, the Izu-Bonin system is sediment-poor, therefore the compositional and latitudinal variations (especially in Pb isotopes) of its arc magmas must be sourced from the subduction component originating primarily from the AOC. Pb is a very good tracer of recycled AOC that may contribute 50% or more of arc magma Pb. Izu-Bonin arc chemistry suggests a subduction influx of Indian-type crust, but the subducting crust sampled at ODP Site 1149 is Pacific-type. The discrepancy between subduction input and arc output calls into question the importance of the AOC as a source of the subduction component, and raises major concerns with our understanding of slab input. During the R/V Revelle 1412 cruise in late 2014, we successfully dredged vertical fault scarps at several sites from 27.5 N to 34.5 N, spanning a range of crustal ages that include a suggested compositional change at ~125 Ma. Major element data show an alkali enrichment towards the north of the study transect. Preliminary incompatible trace element data (e.g. Ba, Zr and Sr) data support this enrichment trend. Detailed mass balance calculations supported by Sr, Nd, Hf and especially Pb isotope analyses will be performed to evaluate whether the AOC controls the Pb isotope chemistry of the Izu-Bonin volcanic arc.

Assimilation by Lunar Mare Basalts: Melting of Crustal Material and Dissolution of Anorthite

NASA Technical Reports Server (NTRS)

Finnila, A. B.; Hess, P. C.; Rutherford, M. J.

1994-01-01

We discuss techniques for calculating the amount of crustal assimilation possible in lunar magma chambers and dikes based on thermal energy balances, kinetic rates, and simple fluid mechanical constraints. Assuming parent magmas of picritic compositions, we demonstrate the limits on the capacity of such magmas to melt and dissolve wall rock of anorthitic, troctolitic, noritic, and KREEP (quartz monzodiorite) compositions. Significant melting of the plagioclase-rich crustal lithologies requires turbulent convection in the assimilating magma and an efficient method of mixing in the relatively buoyant and viscous new melt. Even when this occurs, the major element chemistry of the picritic magmas will change by less than 1-2 wt %. Diffusion coefficients measured for Al2O3 from an iron-free basalt and an orange glass composition are 10(exp -12) m(exp 2) s(exp -1) at 1340 C and 10(exp -11) m(exp 2) s(exp -1) at 1390 C. These rates are too slow to allow dissolution of plagioclase to significantly affect magma compositions. Picritic magmas can melt significant quantities of KREEP, which suggests that their trace element chemistry may still be affected by assimilation processes; however, mixing viscous melts of KREEP composition with the fluid picritic magmas could be prohibitively difficult. We conclude that only a small part of the total major element chemical variation in the mare basalt and volcanic glass collection is due to assimilation/fractional crystallization processes near the lunar surface. Instead, most of the chemical variation in the lunar basalts and volcanic glasses must result from assimilation at deeper levels or from having distinct source regions in a heterogeneous lunar mantle.

Diffusion-driven magnesium and iron isotope fractionation at a gabbro-granite boundary

NASA Astrophysics Data System (ADS)

Wu, Hongjie; He, Yongsheng; Teng, Fang-Zhen; Ke, Shan; Hou, Zhenhui; Li, Shuguang

2018-02-01

Significant magnesium and iron isotope fractionations were observed in an adjacent gabbro and granite profile from the Dabie Orogen, China. Chilled margin and granitic veins at the gabbro side and gabbro xenoliths in the granite indicate the two intrusions were emplaced simultaneously. The δ26Mg decreases from -0.28 ± 0.04‰ to -0.63 ± 0.08‰ and δ56Fe increases from -0.07 ± 0.03‰ to +0.25 ± 0.03‰ along a ∼16 cm traverse from the contact to the granite. Concentrations of major elements such as Al, Na, Ti and most trace elements also systematically change with distance to the contact. All the observations suggest that weathering, magma mixing, fluid exsolution, fractional crystallization and thermal diffusion are not the major processes responsible for the observed elemental and isotopic variations. Rather, the negatively correlated Mg and Fe isotopic compositions as well as co-variations of Mg and Fe isotopes with Mg# reflect Mg-Fe inter-diffusion driven isotope fractionation, with Mg diffusing from the chilled gabbro into the granitic melt and Fe oppositely. The diffusion modeling yields a characteristic diffusive transport distance of ∼6 cm. Consequently, the diffusion duration, during which the granite may have maintained a molten state, can be constrained to ∼2 My. The cooling rate of the granite is calculated to be 52-107 °C/My. Our study suggests diffusion profiles can be a powerful geospeedometry. The observed isotope fractionations also indicate that Mg-Fe inter-diffusion can produce large stable isotope fractionations at least on a decimeter scale, with implications for Mg and Fe isotope study of mantle xenoliths, mafic dikes, and inter-bedded lavas.

The dynamics of LTR retrotransposon accumulation across 25 million years of panicoid grass evolution

PubMed Central

Estep, M C; DeBarry, J D; Bennetzen, J L

2013-01-01

Sample sequence analysis was employed to investigate the repetitive DNAs that were most responsible for the evolved variation in genome content across seven panicoid grasses with >5-fold variation in genome size and different histories of polyploidy. In all cases, the most abundant repeats were LTR retrotransposons, but the particular families that had become dominant were found to be different in the Pennisetum, Saccharum, Sorghum and Zea lineages. One element family, Huck, has been very active in all of the studied species over the last few million years. This suggests the transmittal of an active or quiescent autonomous set of Huck elements to this lineage at the founding of the panicoids. Similarly, independent recent activity of Ji and Opie elements in Zea and of Leviathan elements in Sorghum and Saccharum species suggests that members of these families with exceptional activation potential were present in the genome(s) of the founders of these lineages. In a detailed analysis of the Zea lineage, the combined action of several families of LTR retrotransposons were observed to have approximately doubled the genome size of Zea luxurians relative to Zea mays and Zea diploperennis in just the last few million years. One of the LTR retrotransposon amplification bursts in Zea may have been initiated by polyploidy, but the great majority of transposable element activations are not. Instead, the results suggest random activation of a few or many LTR retrotransposons families in particular lineages over evolutionary time, with some families especially prone to future activation and hyper-amplification. PMID:23321774

Concerted and mosaic evolution of functional modules in songbird brains

PubMed Central

DeVoogd, Timothy J.

2017-01-01

Vertebrate brains differ in overall size, composition and functional capacities, but the evolutionary processes linking these traits are unclear. Two leading models offer opposing views: the concerted model ascribes major dimensions of covariation in brain structures to developmental events, whereas the mosaic model relates divergent structures to functional capabilities. The models are often cast as incompatible, but they must be unified to explain how adaptive changes in brain structure arise from pre-existing architectures and developmental mechanisms. Here we show that variation in the sizes of discrete neural systems in songbirds, a species-rich group exhibiting diverse behavioural and ecological specializations, supports major elements of both models. In accordance with the concerted model, most variation in nucleus volumes is shared across functional domains and allometry is related to developmental sequence. Per the mosaic model, residual variation in nucleus volumes is correlated within functional systems and predicts specific behavioural capabilities. These comparisons indicate that oscine brains evolved primarily as a coordinated whole but also experienced significant, independent modifications to dedicated systems from specific selection pressures. Finally, patterns of covariation between species and brain areas hint at underlying developmental mechanisms. PMID:28490627

Source Apportionment of PM2.5 in Delhi, India Using PMF Model.

PubMed

Sharma, S K; Mandal, T K; Jain, Srishti; Saraswati; Sharma, A; Saxena, Mohit

2016-08-01

Chemical characterization of PM2.5 [organic carbon, elemental carbon, water soluble inorganic ionic components, and major and trace elements] was carried out for a source apportionment study of PM2.5 at an urban site of Delhi, India from January, 2013, to December, 2014. The annual average mass concentration of PM2.5 was 122 ± 94.1 µg m(-3). Strong seasonal variation was observed in PM2.5 mass concentration and its chemical composition with maxima during winter and minima during monsoon. A receptor model, positive matrix factorization (PMF) was applied for source apportionment of PM2.5 mass concentration. The PMF model resolved the major sources of PM2.5 as secondary aerosols (21.3 %), followed by soil dust (20.5 %), vehicle emissions (19.7 %), biomass burning (14.3 %), fossil fuel combustion (13.7 %), industrial emissions (6.2 %) and sea salt (4.3 %).

Chemical composition of PM2.5 at an urban site of Chengdu in southwestern China

NASA Astrophysics Data System (ADS)

Tao, Jun; Cheng, Tiantao; Zhang, Renjian; Cao, Junji; Zhu, Lihua; Wang, Qiyuan; Luo, Lei; Zhang, Leiming

2013-07-01

PM2.5 aerosols were sampled in urban Chengdu from April 2009 to January 2010, and their chemical compositions were characterized in detail for elements, water soluble inorganic ions, and carbonaceous matter. The annual average of PM2.5 was 165 μg m-3, which is generally higher than measurements in other Chinese cities, suggesting serious particulate pollution issues in the city. Water soluble ions contributed 43.5% to the annual total PM2.5 mass, carbonaceous aerosols including elemental carbon and organic carbon contributed 32.0%, and trace elements contributed 13.8%. Distinct daily and seasonal variations were observed in the mass concentrations of PM2.5 and its components, reflecting the seasonal variations of different anthropogenic and natural sources. Weakly acidic to neutral particles were found for PM2.5. Major sources of PM2.5 identified from source apportionment analysis included coal combustion, traffic exhaust, biomass burning, soil dust, and construction dust emissions. The low nitrate: sulfate ratio suggested that stationary emissions were more important than vehicle emissions. The reconstructed masses of ammonium sulfate, ammonium nitrate, particulate carbonaceous matter, and fine soil accounted for 79% of the total measured PM2.5 mass; they also accounted for 92% of the total measured particle scattering.

Spatial variation of volcanic rock geochemistry in the Virunga Volcanic Province: Statistical analysis of an integrated database

NASA Astrophysics Data System (ADS)

Barette, Florian; Poppe, Sam; Smets, Benoît; Benbakkar, Mhammed; Kervyn, Matthieu

2017-10-01

We present an integrated, spatially-explicit database of existing geochemical major-element analyses available from (post-) colonial scientific reports, PhD Theses and international publications for the Virunga Volcanic Province, located in the western branch of the East African Rift System. This volcanic province is characterised by alkaline volcanism, including silica-undersaturated, alkaline and potassic lavas. The database contains a total of 908 geochemical analyses of eruptive rocks for the entire volcanic province with a localisation for most samples. A preliminary analysis of the overall consistency of the database, using statistical techniques on sets of geochemical analyses with contrasted analytical methods or dates, demonstrates that the database is consistent. We applied a principal component analysis and cluster analysis on whole-rock major element compositions included in the database to study the spatial variation of the chemical composition of eruptive products in the Virunga Volcanic Province. These statistical analyses identify spatially distributed clusters of eruptive products. The known geochemical contrasts are highlighted by the spatial analysis, such as the unique geochemical signature of Nyiragongo lavas compared to other Virunga lavas, the geochemical heterogeneity of the Bulengo area, and the trachyte flows of Karisimbi volcano. Most importantly, we identified separate clusters of eruptive products which originate from primitive magmatic sources. These lavas of primitive composition are preferentially located along NE-SW inherited rift structures, often at distance from the central Virunga volcanoes. Our results illustrate the relevance of a spatial analysis on integrated geochemical data for a volcanic province, as a complement to classical petrological investigations. This approach indeed helps to characterise geochemical variations within a complex of magmatic systems and to identify specific petrologic and geochemical investigations that should be tackled within a study area.

Cracking the Code of Soil Genesis. The Early Role of Rare Earth Elements

NASA Astrophysics Data System (ADS)

Zaharescu, D. G.; Dontsova, K.; Burghelea, C. I.; Maier, R. M.; Huxman, T. E.; Chorover, J.

2014-12-01

Soil is terrestrial life support system. Its genesis involves tight interactions between biota and mineral surfaces that mobilize structural elements into biogeochemical cycles. Of all chemical elements rare earth elements (REE) are a group of 16 non-nutrient elements of unusual geochemical similarity and present in all components of the surface environment. While much is known about the role of major nutrients in soil development we lack vital understanding of how early biotic colonization affects more conservative elements such as REE. A highly controlled experiment was set up at University of Arizona's Biosphere-2 that tested the effect of 4 biological treatments, incorporating a combination of microbe, grass, mycorrhiza and uninoculated control on REE leaching and uptake in 4 bedrock substrates: basalt, rhyolite, granite and schist. Generally the response of REE to biota presence was synergistic. Variation in total bedrock chemistry could explain major trends in pore water REE. There was a fast transition from chemistry-dominated to a biota dominated environment in the first 3-4 months of inoculation/seeding which translated into increase in REE signal over time. Relative REE abundances in water were generally reflected in plant concentrations, particularly in root, implying that below ground biomass is the main sync of REE in the ecosystem. Mycorrhiza effect on REE uptake in plant organs was significant and increased with infection rates. Presence of different biota translated into subtle differences in REE release, reveling potential biosignatures of biolota-rock colonization. The results thus bring fundamental insight into early stages non-nutrient cycle and soil genesis.

Probabilistic finite elements for fatigue and fracture analysis

NASA Astrophysics Data System (ADS)

Belytschko, Ted; Liu, Wing Kam

1993-04-01

An overview of the probabilistic finite element method (PFEM) developed by the authors and their colleagues in recent years is presented. The primary focus is placed on the development of PFEM for both structural mechanics problems and fracture mechanics problems. The perturbation techniques are used as major tools for the analytical derivation. The following topics are covered: (1) representation and discretization of random fields; (2) development of PFEM for the general linear transient problem and nonlinear elasticity using Hu-Washizu variational principle; (3) computational aspects; (4) discussions of the application of PFEM to the reliability analysis of both brittle fracture and fatigue; and (5) a stochastic computational tool based on stochastic boundary element (SBEM). Results are obtained for the reliability index and corresponding probability of failure for: (1) fatigue crack growth; (2) defect geometry; (3) fatigue parameters; and (4) applied loads. These results show that initial defect is a critical parameter.

Chemical characterization of biomass fuel smoke particles of rural kitchens of South Asia

NASA Astrophysics Data System (ADS)

Deka, Pratibha; Hoque, Raza Rafiqul

2015-05-01

Biomass fuel smoke particles (BFSPs) of rural kitchens collected during dry and wet seasons were characterized for elements, anions and carbon. The BFSPs of kitchens using varied biomass fuel types viz. cow dung stick, mixed biomass, cow-dung stick-mixed biomass and sugarcane bagasse were chosen for the study. The BFSPs from cow dung fuel stick showed higher levels of elements, anions and particulate carbon than other BFSPs. Calcium, K, Fe and Mg were the major elements found in all BFSPs, which did not vary much between the seasons. Sulphate was found to be the dominant anion present in all BFSPs followed by Clˉ and PO43-. Seasonal variation was pronounced in the case of abundance of anions and particulate carbon. The ratio OC/EC, often used as source signature of biomass burning, was found to be within 1.89-7.41 and 1.72-6.19 during dry and wet seasons respectively.

Probabilistic finite elements for fatigue and fracture analysis

NASA Technical Reports Server (NTRS)

Belytschko, Ted; Liu, Wing Kam

1993-01-01

An overview of the probabilistic finite element method (PFEM) developed by the authors and their colleagues in recent years is presented. The primary focus is placed on the development of PFEM for both structural mechanics problems and fracture mechanics problems. The perturbation techniques are used as major tools for the analytical derivation. The following topics are covered: (1) representation and discretization of random fields; (2) development of PFEM for the general linear transient problem and nonlinear elasticity using Hu-Washizu variational principle; (3) computational aspects; (4) discussions of the application of PFEM to the reliability analysis of both brittle fracture and fatigue; and (5) a stochastic computational tool based on stochastic boundary element (SBEM). Results are obtained for the reliability index and corresponding probability of failure for: (1) fatigue crack growth; (2) defect geometry; (3) fatigue parameters; and (4) applied loads. These results show that initial defect is a critical parameter.

Trace elements in atmospheric particulate matter over a coal burning power production area of western Macedonia, Greece.

PubMed

Petaloti, Christina; Triantafyllou, Athanasios; Kouimtzis, Themistoklis; Samara, Constantini

2006-12-01

Total suspended particle (TSP) concentrations were determined in the Eordea basin (western Macedonia, Greece), an area with intensive lignite burning for power generation. The study was conducted over a one-year period (November 2000-November 2001) at 10 sites located at variable distances from the power plants. Ambient TSP samples were analyzed for 27 major, minor and trace elements. Annual means of TSP concentrations ranged between 47+/-33 microg m(-3) and 110+/-50 microg m(-3) at 9 out of the 10 sites. Only the site closest to the power stations and the lignite conveyor belts exhibited annual TSP levels (210+/-97 microg m(-3)) exceeding the European standard (150 microg m(-3), 80/779/EEC). Concentrations of TSP and almost all elemental components exhibited significant spatial variations; however, the elemental profiles of TSP were quite similar among all sites suggesting that they are affected by similar source types. At all sites, statistical analysis indicated insignificant (P<0.05) seasonal variation for TSP concentrations. Some elements (Cl, As, Pb, Br, Se, S, Cd) exhibited significantly higher concentrations at certain sites during the cold period suggesting more intense emissions from traffic, domestic heating and other combustion sources. On the contrary, concentrations significantly higher in the warm period were found at other sites mainly for crustal elements (Ti, Mn, K, P, Cr, etc.) suggesting stronger influence from soil resuspension and/or fly ash in the warm months. The most enriched elements against local soil or road dust were S, Cl, Cu, As, Se, Br, Cd and Pb, whereas negligible enrichment was found for Ti, Mn, Mg, Al, Si, P, Cr. At most sites, highest concentrations of TSP and elemental components were associated with low- to moderate-speed winds favoring accumulation of emissions from local sources. Influences from the power generation were likely at those sites located closest to the power plants and mining activities.

Cryptic trace-element alteration of Anorthosite, Stillwater complex, Montana

USGS Publications Warehouse

Czamanske, G.K.; Loferski, P.J.

1996-01-01

Evidence of cryptic alteration and correlations among K, Ba, and LREE concentrations indicate that a post-cumulus, low-density aqueous fluid phase significantly modified the trace-element contents of samples from Anorthosite zones I and II of the Stillwater Complex, Montana. Concentrations of Ba, Ca, Co, Cr, Cu, Fe, Hf, K, Li, Mg, Mn, Na, Ni, Sc, Sr, Th, Zn, and the rare-earth elements (REE) were measured in whole rocks and plagioclase separates from five traverses across the two main plagioclase cumulate (anorthosite) zones and the contiguous cumulates of the Stillwater Complex in an attempt to better understand the origin and solidification of the anorthosites. However, nearly the entire observed compositional range for many trace elements can be duplicated at a single locality by discriminating between samples rich in oikocrystic pyroxene and those which are composed almost entirely of plagioclase and show anhedral-granular texture. Plagioclase separates with high trace-element contents were obtained from the pyroxene-poor samples, for which maps of K concentration show plagioclase grains to contain numerous fractures hosting a fine-grained, K-rich phase, presumed to be sericite. Secondary processes in layered intrusions have the potential to cause cryptic disturbance, and the utmost care must be taken to ensure that samples provide information about primary processes. Although plagioclase from Anorthosite zones I and II shows significant compositional variation, there are no systematic changes in the major- or trace-element compositions of plagioclase over as much as 630 m of anorthosite thickness or 18 km of strike length. Plagioclase in the two major anorthosite zones shows little distinction in trace-element concentrations from plagioclase in the cumulates immediately below, between, and above these zones.

Origin Of Extreme 3He/4He Signatures In Icelandic Lavas: Insights From Melt Inclusion Studies

NASA Astrophysics Data System (ADS)

Harlou, R.; Kent, A. J.; Breddam, K.; Davidson, J. P.; Pearson, D. G.

2003-12-01

Helium isotopes are considered a powerful tool for tracking different mantle domains. Yet, the origin of He isotope variations in many basaltic suites remains enigmatic and often difficult to link with more lithophile chemical and isotopic tracers. One problem is that He isotope ratios are measured from crushed olivines and thus reflect prior fluid and melt fluxes trapped in inclusions within the olivine grains, whereas the lithophile elements mainly reflect the host lava. In an attempt to link He and lithophile element variations, we have characterized the major and trace element composition including volatile elements, of olivine-hosted melt inclusions from three ankaramitic lavas from Vestfirdir, NW-Iceland. Previous studies have reported extreme 3He/4He ratios from NW-Iceland and one ankaramite (SEL97) has been suggested to provide the most precise estimate of the radiogenic (Sr-Nd-Pb) isotopic composition of a relatively undegassed (high 3He/4He) mantle component (C or FOZO) common to several ocean islands (Hilton et al. 1999, EPSL 173, 53-60). The samples investigated here exhibit amongst the highest 3He/4He ratios observed in terrestrial rocks (42.9 and 34.8 R/Ra). A detailed account of the trace element signature of melt inclusions in these samples may thus help explain the origin of FOZO. One sample of similar composition to these, has a lower He content and a relatively poorly defined He isotope composition of 8.15 +/- 5.1 R/Ra (Breddam & Kurz, 2001, EOS, 82, F1315). In terms of major elements, the whole rock data reflect olivine accumulation, whereas the melt inclusion data reflect ol + cpx fractionation. The melt inclusions are generally basaltic (Mg#: 52-62), with primitive mantle normalised trace element concentrations that are broadly parallel the host lavas. There is little compositional difference between melt inclusion populations from high and low 3He/4He lavas, although inclusions of the low 3He/4He lava have lower S and moderately lower Cl. The observed range of trace element ratios: [La/Sm]N 1-4, [La/Yb]N 1-5, Sr/Nd 14-24, Ba/Rb 9-23, and Ce/Pb 5-46, covers much of the range observed in Icelandic alkali basalts. The compositional similarities between inclusions and host lavas suggests that bulk rock compositions are petrogenetically related to the melts sampled by melt inclusions. If He predominantly resides in these inclusions, it suggests that the whole rock composition is an aggregate derived from the same melts that contain the measured He.

Inter- and intra-group compositional variations in Apollo 15 pyroclastic green glass - An electron- and ion-microprobe study

NASA Technical Reports Server (NTRS)

Galbreath, K. C.; Shearer, C. K.; Papike, J. J.; Shimizu, N.

1990-01-01

Results are presented on major- and trace-element abundance analyses of Apollo 15 pyroclastic green glasses from groups A, B, C, D, and E, carried out using electron- and ion-microprobe techniques. The diagrams depicting Sr, Zr, Ba, and Nd vs Co variations indicate the presence of a high-Co trend in groups A and D and a low-Co trend in groups B and C. Group-E glasses were found to be significantly enriched in Sr, relative to the other four glass groups. Chemical data of this study were integrated with previous data to evaluate various magmatic processes that have been proposed in the past to explain chemical variations in the lunar green glass. Results of calculations using a source mixing model suggest that the Apollo 15 green glasses represent multiple eruptive events from three chemically distinct but compositionally variable source regions.

Nonlinear-regression groundwater flow modeling of a deep regional aquifer system

USGS Publications Warehouse

Cooley, Richard L.; Konikow, Leonard F.; Naff, Richard L.

1986-01-01

A nonlinear regression groundwater flow model, based on a Galerkin finite-element discretization, was used to analyze steady state two-dimensional groundwater flow in the areally extensive Madison aquifer in a 75,000 mi2 area of the Northern Great Plains. Regression parameters estimated include intrinsic permeabilities of the main aquifer and separate lineament zones, discharges from eight major springs surrounding the Black Hills, and specified heads on the model boundaries. Aquifer thickness and temperature variations were included as specified functions. The regression model was applied using sequential F testing so that the fewest number and simplest zonation of intrinsic permeabilities, combined with the simplest overall model, were evaluated initially; additional complexities (such as subdivisions of zones and variations in temperature and thickness) were added in stages to evaluate the subsequent degree of improvement in the model results. It was found that only the eight major springs, a single main aquifer intrinsic permeability, two separate lineament intrinsic permeabilities of much smaller values, and temperature variations are warranted by the observed data (hydraulic heads and prior information on some parameters) for inclusion in a model that attempts to explain significant controls on groundwater flow. Addition of thickness variations did not significantly improve model results; however, thickness variations were included in the final model because they are fairly well defined. Effects on the observed head distribution from other features, such as vertical leakage and regional variations in intrinsic permeability, apparently were overshadowed by measurement errors in the observed heads. Estimates of the parameters correspond well to estimates obtained from other independent sources.

Nonlinear-Regression Groundwater Flow Modeling of a Deep Regional Aquifer System

NASA Astrophysics Data System (ADS)

Cooley, Richard L.; Konikow, Leonard F.; Naff, Richard L.

1986-12-01

A nonlinear regression groundwater flow model, based on a Galerkin finite-element discretization, was used to analyze steady state two-dimensional groundwater flow in the areally extensive Madison aquifer in a 75,000 mi2 area of the Northern Great Plains. Regression parameters estimated include intrinsic permeabilities of the main aquifer and separate lineament zones, discharges from eight major springs surrounding the Black Hills, and specified heads on the model boundaries. Aquifer thickness and temperature variations were included as specified functions. The regression model was applied using sequential F testing so that the fewest number and simplest zonation of intrinsic permeabilities, combined with the simplest overall model, were evaluated initially; additional complexities (such as subdivisions of zones and variations in temperature and thickness) were added in stages to evaluate the subsequent degree of improvement in the model results. It was found that only the eight major springs, a single main aquifer intrinsic permeability, two separate lineament intrinsic permeabilities of much smaller values, and temperature variations are warranted by the observed data (hydraulic heads and prior information on some parameters) for inclusion in a model that attempts to explain significant controls on groundwater flow. Addition of thickness variations did not significantly improve model results; however, thickness variations were included in the final model because they are fairly well defined. Effects on the observed head distribution from other features, such as vertical leakage and regional variations in intrinsic permeability, apparently were overshadowed by measurement errors in the observed heads. Estimates of the parameters correspond well to estimates obtained from other independent sources.

Trace elements geochemistry of fractured basement aquifer in southern Malawi: A case of Blantyre rural

NASA Astrophysics Data System (ADS)

Mapoma, Harold Wilson Tumwitike; Xie, Xianjun; Nyirenda, Mathews Tananga; Zhang, Liping; Kaonga, Chikumbusko Chiziwa; Mbewe, Rex

2017-07-01

In this study, twenty one (21) trace elements in the basement complex groundwater of Blantyre district, Malawi were analyzed. The majority of the analyzed trace elements in the water were within the standards set by World Health Organization (WHO) and Malawi Standards Board (MSB). But, iron (Fe) (BH16 and 21), manganese (Mn) (BH01) and selenium (Se) (BH02, 13, 18, 19 and 20) were higher than the WHO and MSB standards. Factor analysis (FA) revealed up to five significant factors which accounted for 87.4% of the variance. Factor 1, 2 and 3 suggest evaporite dissolution and silicate weathering processes while the fourth factor may explain carbonate dissolution and pH influence on trace element geochemistry of the studied groundwater samples. According to PHREEQC computed saturation indices, dissolution, precipitation and rock-water-interaction control the levels of trace elements in this aquifer. Elevated concentrations of Fe, Mn and Se in certain boreholes are due to the geology of the aquifer and probable redox status of groundwater. From PHREEQC speciation results, variations in trace element species were observed. Based on this study, boreholes need constant monitoring and assessment for human consumption to avoid health related issues.

Enrichment and distribution of 24 elements within the sub-sieve particle size distribution ranges of fly ash from wastes incinerator plants.

PubMed

Raclavská, Helena; Corsaro, Agnieszka; Hartmann-Koval, Silvie; Juchelková, Dagmar

2017-12-01

The management of an increasing amount of municipal waste via incineration has been gaining traction. Fly ash as a by-product of incineration of municipal solid waste is considered a hazardous waste due to the elevated content of various elements. The enrichment and distribution of 24 elements in fly ash from three wastes incinerators were evaluated. Two coarse (>100 μm and <100 μm) and five sub-sieve (12-16, 16-23, 23-34, 34-49, and 49-100 μm) particle size fractions separated on a cyclosizer system were analyzed. An enhancement in the enrichment factor was observed in all samples for the majority of elements in >100 μm range compared with <100 μm range. The enrichment factor of individual elements varied considerably within the samples as well as the sub-sieve particle size ranges. These variations were attributed primarily to: (i) the vaporization and condensation mechanisms, (ii) the different design of incineration plants, (iii) incineration properties, (iv) the type of material being incinerated, and (v) the affinity of elements. Copyright © 2017 Elsevier Ltd. All rights reserved.

Bunburra Rockhole: Exploring the geology of a new differentiated asteroid

NASA Astrophysics Data System (ADS)

Benedix, G. K.; Bland, P. A.; Friedrich, J. M.; Mittlefehldt, D. W.; Sanborn, M. E.; Yin, Q.-Z.; Greenwood, R. C.; Franchi, I. A.; Bevan, A. W. R.; Towner, M. C.; Perrotta, G. C.; Mertzman, S. A.

2017-07-01

Bunburra Rockhole is the first recovered meteorite of the Desert Fireball Network. We expanded a bulk chemical study of the Bunburra Rockhole meteorite to include major, minor and trace element analyses, as well as oxygen and chromium isotopes, in several different pieces of the meteorite. This was to determine the extent of chemical heterogeneity and constrain the origin of the meteorite. Minor and trace element analyses in all pieces are exactly on the basaltic eucrite trend. Major element analyses show a slight deviation from basaltic eucrite compositions, but not in any systematic pattern. New oxygen isotope analyses on 23 pieces of Bunburra Rockhole shows large variation in both δ17O and δ18O, and both are well outside the HED parent body fractionation line. We present the first Cr isotope results of this rock, which are also distinct from HEDs. Detailed computed tomographic scanning and back-scattered electron mapping do not indicate the presence of any other meteoritic contaminant (contamination is also unlikely based on trace element chemistry). We therefore conclude that Bunburra Rockhole represents a sample of a new differentiated asteroid, one that may have more variable oxygen isotopic compositions than 4 Vesta. The fact that Bunburra Rockhole chemistry falls on the eucrite trend perhaps suggests that multiple objects with basaltic crusts accreted in a similar region of the Solar System.

Rotational stellar structures based on the Lagrangian variational principle

NASA Astrophysics Data System (ADS)

Yasutake, Nobutoshi; Fujisawa, Kotaro; Yamada, Shoichi

2017-06-01

A new method for multi-dimensional stellar structures is proposed in this study. As for stellar evolution calculations, the Heney method is the defacto standard now, but basically assumed to be spherical symmetric. It is one of the difficulties for deformed stellar-evolution calculations to trace the potentially complex movements of each fluid element. On the other hand, our new method is very suitable to follow such movements, since it is based on the Lagrange coordinate. This scheme is also based on the variational principle, which is adopted to the studies for the pasta structures inside of neutron stars. Our scheme could be a major break through for evolution calculations of any types of deformed stars: proto-planets, proto-stars, and proto-neutron stars, etc.

Alu expression in human cell lines and their retrotranspositional potential.

PubMed

Oler, Andrew J; Traina-Dorge, Stephen; Derbes, Rebecca S; Canella, Donatella; Cairns, Brad R; Roy-Engel, Astrid M

2012-06-20

The vast majority of the 1.1 million Alu elements are retrotranspositionally inactive, where only a few loci referred to as 'source elements' can generate new Alu insertions. The first step in identifying the active Alu sources is to determine the loci transcribed by RNA polymerase III (pol III). Previous genome-wide analyses from normal and transformed cell lines identified multiple Alu loci occupied by pol III factors, making them candidate source elements. Analysis of the data from these genome-wide studies determined that the majority of pol III-bound Alus belonged to the older subfamilies Alu S and Alu J, which varied between cell lines from 62.5% to 98.7% of the identified loci. The pol III-bound Alus were further scored for estimated retrotransposition potential (ERP) based on the absence or presence of selected sequence features associated with Alu retrotransposition capability. Our analyses indicate that most of the pol III-bound Alu loci candidates identified lack the sequence characteristics important for retrotransposition. These data suggest that Alu expression likely varies by cell type, growth conditions and transformation state. This variation could extend to where the same cell lines in different laboratories present different Alu expression patterns. The vast majority of Alu loci potentially transcribed by RNA pol III lack important sequence features for retrotransposition and the majority of potentially active Alu loci in the genome (scored high ERP) belong to young Alu subfamilies. Our observations suggest that in an in vivo scenario, the contribution of Alu activity on somatic genetic damage may significantly vary between individuals and tissues.

Variation of heavy metals in recent sediments from Piratininga Lagoon (Brazil): interpretation of geochemical data with the aid of multivariate analysis

NASA Astrophysics Data System (ADS)

Huang, W.; Campredon, R.; Abrao, J. J.; Bernat, M.; Latouche, C.

1994-06-01

In the last decade, the Atlantic coast of south-eastern Brazil has been affected by increasing deforestation and anthropogenic effluents. Sediments in the coastal lagoons have recorded the process of such environmental change. Thirty-seven sediment samples from three cores in Piratininga Lagoon, Rio de Janeiro, were analyzed for their major components and minor element concentrations in order to examine geochemical characteristics and the depositional environment and to investigate the variation of heavy metals of environmental concern. Two multivariate analysis methods, principal component analysis and cluster analysis, were performed on the analytical data set to help visualize the sample clusters and the element associations. On the whole, the sediment samples from each core are similar and the sample clusters corresponding to the three cores are clearly separated, as a result of the different conditions of sedimentation. Some changes in the depositional environment are recognized using the results of multivariate analysis. The enrichment of Pb, Cu, and Zn in the upper parts of cores is in agreement with increasing anthropogenic influx (pollution).

Comparison of periodic and other characteristics of geomagnetic and meterological rocket data

NASA Technical Reports Server (NTRS)

Nastrom, G. D.; Belmont, A. D.

1976-01-01

The temporal variations in stratospheric winds and temperatures with the geomagnetic field elements were compared. From a periodic analysis of the geomagnetic field elements the amplitude and phase of the quasibiennial, annual, and semiannual waves are given for stations from 1 degree S to 89 degree N. These results are then compared with corresponding waves reported in rocketsonde wind and temperature data. The annual waves are found to be coupled as a result of the annual variation in the dynamo effect of the wind in the lower ionosphere. The semiannual waves are also found to be coupled and three possible causes for the extra tropical stratospheric semiannual wind wave are discussed. Time variance spectra for the interval from 4 days to 44 days in both zonal winds and horizontal geomagnetic field intensity are compared for years when major midwinter warmings occur and years when only minor warmings occur. The noted differences are suggested to arise from upward propagating planetary waves which are absorbed or refracted in varying amounts depending on the prevailing circulation.

Distribution patterns of elements in dental enamel of G. blacki: a preliminary dietary investigation using SRXRF

NASA Astrophysics Data System (ADS)

Qu, Yating; Jin, Changzhu; Zhang, Yingqi; Hu, Yaowu; Shang, Xue; Wang, Changsui

2013-04-01

We measured the elemental mappings in dental enamel of Gigantopithecus blacki ( n=3) using synchrotron radiation X-ray fluorescence (SRXRF) to understand the dietary variation during the time of tooth eruption. In order to account for the effects of diagenesis on the variation of elements in these fossil teeth, we compared the Fe and Mn elemental distribution and levels in dental enamel of G. blacki with that of a single modern pig tooth and found no differences. The observation of the variations of Sr, Ca and RE (rare earth elements) distribution in the incremental lines reveals that the plant foods utilized by G. blacki from the early Pleistocene or the middle Pleistocene had varied during the formation of dental enamel, possibly caused by the change of living environment or food resources. The variations of elemental distribution in different incremental lines are very promising to understand the nutritional and physical stress of G. blacki during the tooth eruption and environmental adaptations.

Constrained and Unconstrained Variational Finite Element Formulation of Solutions to a Stress Wave Problem - a Numerical Comparison.

DTIC Science & Technology

1982-10-01

Element Unconstrained Variational Formulations," Innovativ’e Numerical Analysis For the Applied Engineering Science, R. P. Shaw, et at, Fitor...Initial Boundary Value of Gun Dynamics Solved by Finite Element Unconstrained Variational Formulations," Innovative Numerical Analysis For the Applied ... Engineering Science, R. P. Shaw, et al, Editors, University Press of Virginia, Charlottesville, pp. 733-741, 1980. 2 J. J. Wu, "Solutions to Initial

Seasonal variation of organic aerosol in PM2.5 at Anmyeondo, a background site in Korea

NASA Astrophysics Data System (ADS)

Lee, J.; Kim, E. S.; Kim, Y. P.; Jung, C. H.; Lee, J.

2016-12-01

Routine measurements of PM2.5 and chemical speciation for 100 individual organic compounds were carried out to understand seasonal variation of organic compounds at a background area in Korea between 2015 and 2016. Organic compounds analyzed in this study were classified into five groups, n-alkanes, polycyclic aromatic hydrocarbons (PAHs), fatty acids (FA), dicarboxylic acids (DCAs), and sugar. Further, organic carbon (OC), elemental carbon (EC), water-soluble organic carbon (WSOC) and Humic Like Substance-Carbon (HULIS-C) in PM2.5 were simultaneously analyzed to make mass balance of carbonaceous aerosol in PM2.5 at a background site in Korea. PAHs concentrations at this site was lower than that at Seoul, a representative urban site in Korea. PAHs and n-Alkanes concentrations showed clear seasonal variation with summer minimum and winter maximum, while, seasonal variation of DCAs and Sugars were different with PAHs and n-Alkanes.WSOC concentrations were highly correlated with SOC (Secondary Organic Carbon) concentrations which were estimated by the EC tracer method. The results indicate the formation of secondary organic aerosol (SOA) is major factor for the determination of WSOC concentrations in this region. HULIS-C as known one of brown carbon was major component of WSOC which accounts for 39 to 99% in WSOC. The average concentrations of HULIS-C was 2.02±1.42 and the highest concentration was observed in fall.

A survey of parametrized variational principles and applications to computational mechanics

NASA Technical Reports Server (NTRS)

Felippa, Carlos A.

1993-01-01

This survey paper describes recent developments in the area of parametrized variational principles (PVP's) and selected applications to finite-element computational mechanics. A PVP is a variational principle containing free parameters that have no effect on the Euler-Lagrange equations. The theory of single-field PVP's based on gauge functions (also known as null Lagrangians) is a subset of the inverse problem of variational calculus that has limited value. On the other hand, multifield PVP's are more interesting from theoretical and practical standpoints. Following a tutorial introduction, the paper describes the recent construction of multifield PVP's in several areas of elasticity and electromagnetics. It then discusses three applications to finite-element computational mechanics: the derivation of high-performance finite elements, the development of element-level error indicators, and the constructions of finite element templates. The paper concludes with an overview of open research areas.

Reconstructing paleosalinity in the Sacramento-San Joaquin Delta of California using major elements in peat

NASA Astrophysics Data System (ADS)

Drexler, J. Z.; Alpers, C. N.; Taylor, H. E.; Windham-Myers, L.; Neymark, L. A.; Paces, J. B.

2010-12-01

Marshes in the Sacramento-San Joaquin Delta, the most landward extent of the San Francisco Estuary, started forming around ~6,700 years ago. Currently, Delta marshes are classified as tidal freshwater, however it is unknown to what degree the salinity regime has varied between brackish and fresh conditions since marsh development. This information is important to managers considering major changes to the flow regime in the Delta, because such changes could impact the future sustainability of endangered species such as the Delta smelt (Hypomesus transpacificus), which live in or just upstream of the mixing zone between fresh and brackish water. The main goal of the Rates and Evolution of PEat Accretion through Time project (REPEAT II) is to reconstruct paleosalinity regimes in the Delta. We are using elemental concentrations of Na, Ca, K, and Mg (the major cations in ocean water) in peat profiles to develop a quantitative index of salinity for the past 6000+ years. We are normalizing the elemental concentrations to Ti (a proxy for inorganic sediment content because it is inversely correlated with loss on ignition, a measure of peat organic content) to correct for bias in elemental concentrations caused by variations in the inorganic sediment content of peat through time. Plots of Ti-normalized element concentration vs. peat depth (or age) indicate that Browns Island, a brackish marsh on the western edge of the Delta, has experienced significant variations in salinity through the millennia. Vertical peat profiles show a spatial trend of decreasing salinity from west (bay-side) to east (landward) (i.e., Browns Island > Sherman Island > Franks Wetland ≧ Bacon Channel Island). During the period from 2300 to 500 calibrated years before present, Na concentrations in peat at Browns Island indicate a particularly saline period, with peat containing up to 3 wt. % Na. In the last 100 years or so, salinity at Browns Island has apparently decreased and the Na content of peat has stabilized at between 0.6 and 1 wt. % Na. We are currently analyzing the roots of live plants collected along a salinity gradient (range of means from ~0.2 to 20 ppt) in the San Francisco Estuary to determine concentrations of Na, Ca, K, and Mg in root material and the empirical relationships between root chemistry and ambient salinity levels. Because the organic component of peat is largely made up of roots that have decomposed in situ, we anticipate using these empirical relationships to quantify salinity regimes in the Delta through time.

A Comparison of Neuroimaging Abnormalities in Multiple Sclerosis, Major Depression and Chronic Fatigue Syndrome (Myalgic Encephalomyelitis): is There a Common Cause?

PubMed

Morris, Gerwyn; Berk, Michael; Puri, Basant K

2018-04-01

There is copious evidence of abnormalities in resting-state functional network connectivity states, grey and white matter pathology and impaired cerebral perfusion in patients afforded a diagnosis of multiple sclerosis, major depression or chronic fatigue syndrome (CFS) (myalgic encephalomyelitis). Systemic inflammation may well be a major element explaining such findings. Inter-patient and inter-illness variations in neuroimaging findings may arise at least in part from regional genetic, epigenetic and environmental variations in the functions of microglia and astrocytes. Regional differences in neuronal resistance to oxidative and inflammatory insults and in the performance of antioxidant defences in the central nervous system may also play a role. Importantly, replicated experimental findings suggest that the use of high-resolution SPECT imaging may have the capacity to differentiate patients afforded a diagnosis of CFS from those with a diagnosis of depression. Further research involving this form of neuroimaging appears warranted in an attempt to overcome the problem of aetiologically heterogeneous cohorts which probably explain conflicting findings produced by investigative teams active in this field. However, the ionising radiation and relative lack of sensitivity involved probably preclude its use as a routine diagnostic tool.

Geochemical and Mineralogical Profiles Across the Listvenite- Metamorphic Transition in the Basal Megathrust of the Oman Ophiolite: First Results from Drilling at Oman Drilling Project Hole BT1B

NASA Astrophysics Data System (ADS)

Godard, M.; Bennett, E.; Carter, E.; Kourim, F.; Lafay, R.; Noël, J.; Kelemen, P. B.; Michibayashi, K.; Harris, M.

2017-12-01

The transition from the base of the Oman ophiolite to the underlying metamorphic sole was drilled at Hole BT1B (Sumail Massif) during Phase 1 of Oman Drilling Project (Winter 2016-2017). 74 samples were collected from the 300m of recovered cores for whole rock geochemical and XRD analyses. 55 listvenites, ophicarbonates and serpentinites, and 19 schists and greenstones were analyzed for major and minor elements (XRF) and for CO2 and S concentrations (CHNS) aboard DV Chikyu (ChikyuOman, Summer 2017). Analyses for trace elements (ICP-MS) at the University of Montpellier are in progress. The composition of listvenites, ophicalcites and serpentinites recovered at Hole BT1B record extensive interactions between CO2-rich fluids and the serpentinized peridotites. These reactions involved addition of SiO2 and formation of carbonates at the expense of the serpentinized peridotite protolith. All samples recovered from the mantle section are enriched in fluid mobile and incompatible trace elements compared to the mean composition of the Oman mantle. These enrichments are up to 103 times the Oman mantle for Rb and Ba. They mimic the pattern of the samples from the metamorphic sole. This suggests that the composition of the listvenites in these elements is controlled by that of contaminating fluids that may have originated in the same lithologies as those drilled at the base of Hole BT1B. Listvenites, ophicalcites and serpentinites also show notable downhole chemical variations, with listvenites showing marked variations in Al2O3 and TiO2. Occurrence of lherzolites and cpx-harzburgites has been reported at the base of the Oman dominantly harzburgitic mantle section. The observed variations in the listvenites (Al2O3 and TiO2) could be related to the composition of their protolith, the deepest having more fertile compositions. Alternatively, the observed downhole changes in the composition of listvenites may relate to the progressive equilibration of the reacting ultramafic-rocks and/or listvenite with the fluids originating in the subducting metamorphic sole; these variations could be related to heterogeneous reaction kinetics (temperature, reactive surfaces, chemical gradients) and/or to transport (e.g. local variations in permeability) within the listvenite units.

Trace and Major Element Chemistry Across the Cretaceous/Tertiary Boundary at Stevns Klint

NASA Astrophysics Data System (ADS)

Graup, G.; Spettel, B.

1992-07-01

INAA measurements of samples obtained by high-resolution stratigraphy on a mm scale reveal considerable variations in element concentrations across the boundary with their respective maxima stratified in distinct sublayers (Graup et al., 1992). These results suggest that measurements of bulk boundary samples a few cm thick may be inappropriate as concentration variations and element ratios would be leveled out pretending a single geochemical signal. Having investigated a sample comprising sublayers B, C, and D (Fig. 1), Alvarez et al.(1980) acknowledge that "no information is available on the chemical variations within the boundary." This kind of information is given below and shown in Fig. 1 (sublayers A and B are drafted in double scale). From the main lithologic characteristics of Maastrichtian to Paleocene sediments (Schmitz, 1988; Graup et al., 1992) it is readily deduced that Eh and pH conditions in the marine environment changed from oxic-mildly alkaline with normal carbonate sedimentation (Q-M) to anoxic-(mildly) acid with deposition of pyrite spherules (A3), organic material, and clay minerals in the Fish Clay (A-D), followed by a restoration of oxic-alkaline conditions depositing the Cerithium limestone (E- I). The element distribution across the boundary obviously mirrors these alternating environmental conditions: compounds soluble under acid and reducing conditions like Ca-carbonate and Mn are strongly depleted in the Fish Clay (Fig. 1A), whereas compounds stable and insoluble under these conditions are highly enriched (Fig. 1B). The opposite holds true for the calcareous sediments. Across the boundary, enhanced element concentrations are not evenly distributed but appear to be stratified with maximum concentrations in three distinct sublayers for the following elements: (1) A1 (hard clay): peak concentrations for REE (La 72 ppm) and U (45.5 ppm) as compared to 13 ppm La and 2 ppm U in sublayer A2 immediately above. (2) A3 (pyrite spherules): peak concentrations for Fe, Co, Ni, Au, and all chalcophiles. The trace elements correlate well with Fe across the boundary. (3) B (organic-rich marl): peak concentrations for Ir (87.6 ppb), Re (96 ppb, but 113 ppb in C), and organic carbon (2.3%). Ir correlates well with organic carbon (data from Schmitz, 1988), to a lesser extent with Re, and, possibly, Os, but is not correlated with Ni, Co or Au (Graup et al., 1992). Despite large variations in absolute concentrations and, therefore, also of ratios for elements with differing chemical behaviour, there are some pairs of chemically closely related elements (siderophiles as well as chalco- and lithophiles), the ratios of which remain fairly constant over the whole boundary range. Examples shown in Fig. 1A: Ni/Co (average 7.6/std.dev. 1.2) and La/Yb (12.9/2.4). Although Eh,pH conditions vary widely, these elements are not fractionated from each other because of their closely similar geochemical behaviour. The high concentrations of Ir, Ni, and chalcophile elements making up the K/T geochemical anomaly should be indicative of an external component added to the marine environment. The elements introduced were subsequently precipitated according to their chemical properties and changing Eh,pH conditions resulting in stratification of peak concentrations. The constancy of certain element ratios indicates an extended period of availability for this external component. REFERENCES: Alvarez L.W., Alvarez W., Asaro F., and Michel H.V. (1980) Science 208, 1095-1108. Graup G., Palme H., and Spettel B. (1992) Lunar Planet. Sci.(abstract) 23, 445. Schmitz B. (1988) Geology 16, 1068-1072.

Geochemistry of the Serifos calc-alkaline granodiorite pluton, Greece: constraining the crust and mantle contributions to I-type granitoids

NASA Astrophysics Data System (ADS)

Stouraiti, C.; Baziotis, I.; Asimow, P. D.; Downes, H.

2017-11-01

The Late Miocene (11.6-9.5 Ma) granitoid intrusion on the island of Serifos (Western Cyclades, Aegean Sea) is composed of syn- to post-tectonic granodiorite with quartz monzodiorite enclaves, cut by dacitic and aplitic dikes. The granitoid, a typical I-type metaluminous calcic amphibole-bearing calc-alkaline pluton, intruded the Cycladic Blueschists during thinning of the Aegean plate. Combining field, textural, geochemical and new Sr-Nd-O isotope data presented in this paper, we postulate that the Serifos intrusion is a single-zoned pluton. The central facies has initial 87Sr/86Sr = 0.70906 to 0.7106, ɛNd(t) = - 5.9 to - 7.5 and δ18Οqtz = + 10 to + 10.6‰, whereas the marginal zone (or border facies) has higher initial 87Sr/86Sr = 0.711 to 0.7112, lower ɛ Nd(t) = - 7.3 to - 8.3, and higher δ18Οqtz = + 10.6 to + 11.9‰. The small range in initial Sr and Nd isotopic values throughout the pluton is paired with a remarkable uniformity in trace element patterns, despite a large range in silica contents (58.8 to 72 wt% SiO2). Assimilation of a crustally derived partial melt into the mafic parental magma would progressively add incompatible trace elements and SiO2 to the evolving mafic starting liquid, but the opposite trend, of trace element depletion during magma evolution, is observed in the Serifos granodiorites. Thermodynamic modeling of whole-rock compositions during simple fractional crystallization (FC) or assimilation-fractional crystallization (AFC) processes of major rock-forming minerals—at a variety of pressure, oxidation state, and water activity conditions—fails to reproduce simultaneously the major element and trace element variations among the Serifos granitoids, implying a critical role for minor phases in controlling trace element fractionation. Both saturation of accessory phases such as allanite and titanite (at SiO2 ≥ 71 wt%)(to satisfy trace element constraints) and assimilation of partial melts from a metasedimentary component (to match isotopic data) must have accompanied fractional crystallization of the major phases.

Direct evidence of the feedback between climate and nutrient, major, and trace element transport to the oceans

NASA Astrophysics Data System (ADS)

Eiriksdottir, Eydis Salome; Gislason, Sigurður Reynir; Oelkers, Eric H.

2015-10-01

Climate changes affect weathering, denudation and riverine runoff, and therefore elemental fluxes to the ocean. This study presents the climate effect on annual fluxes of 28 dissolved elements, and organic and inorganic particulate fluxes, determined over 26-42 year period in three glacial and three non-glacial river catchments located in Eastern Iceland. Annual riverine fluxes were determined by generating robust correlations between dissolved element concentrations measured from 1998 to 2003 and suspended inorganic matter concentrations measured from 1962 to 2002 with instantaneous discharge measured at the time of sampling in each of these rivers. These correlations were used together with measured average daily discharge to compute daily elemental fluxes. Integration of these daily fluxes yielded the corresponding annual fluxes. As the topography and lithology of the studied glacial and non-glacial river catchments are similar, we used the records of average annual temperature and annual runoff to examine how these parameters and glacier melting influenced individual element fluxes to the oceans. Significant variations were found between the individual elements. The dissolved fluxes of the more soluble elements, such as Mo, Sr, and Na are less affected by increasing temperature and runoff than the insoluble nutrients and trace elements including Fe, P, and Al. This variation between the elements tends to be more pronounced for the glacial compared to the non-glacial rivers. These observations are interpreted to stem from the stronger solubility control on the concentrations of the insoluble elements such that they are less affected by dilution. The dilution of the soluble elements by increasing discharge in the glacial rivers is enhanced by a relatively low amount of water-rock interaction; increased runoff due to glacial melting tend to be collected rapidly into river channels limiting water-rock interaction. It was found that the climate effect on particle transport from the glacial rivers is far higher than all other measured fluxes. This observation, together with the finding that the flux to the oceans of biolimiting elements such as P and Fe is dominated by particulates, suggests that particulate transport by melting glaciers have a relatively strong effect on the feedback between continental weathering, atmospheric chemistry, and climate regulation over geologic time.

Compositional variations at ultra-structure length scales in coral skeleton

NASA Astrophysics Data System (ADS)

Meibom, Anders; Cuif, Jean-Pierre; Houlbreque, Fanny; Mostefaoui, Smail; Dauphin, Yannicke; Meibom, Karin L.; Dunbar, Robert

2008-03-01

Distributions of Mg and Sr in the skeletons of a deep-sea coral ( Caryophyllia ambrosia) and a shallow-water, reef-building coral ( Pavona clavus) have been obtained with a spatial resolution of 150 nm, using the NanoSIMS ion microprobe at the Muséum National d'Histoire Naturelle in Paris. These trace element analyses focus on the two primary ultra-structural components in the skeleton: centers of calcification (COC) and fibrous aragonite. In fibrous aragonite, the trace element variations are typically on the order of 10% or more, on length scales on the order of 1-10 μm. Sr/Ca and Mg/Ca variations are not correlated. However, Mg/Ca variations in Pavona are strongly correlated with the layered organization of the skeleton. These data allow for a direct comparison of trace element variations in zooxanthellate and non-zooxanthellate corals. In both corals, all trace elements show variations far beyond what can be attributed to variations in the marine environment. Furthermore, the observed trace element variations in the fibrous (bulk) part of the skeletons are not related to the activity of zooxanthellae, but result from other biological activity in the coral organism. To a large degree, this biological forcing is independent of the ambient marine environment, which is essentially constant on the growth timescales considered here. Finally, we discuss the possible detection of a new high-Mg calcium carbonate phase, which appears to be present in both deep-sea and reef-building corals and is neither aragonite nor calcite.

Normalizing XRF-scanner data: A cautionary note on the interpretation of high-resolution records from organic-rich lakes

NASA Astrophysics Data System (ADS)

Löwemark, L.; Chen, H.-F.; Yang, T.-N.; Kylander, M.; Yu, E.-F.; Hsu, Y.-W.; Lee, T.-Q.; Song, S.-R.; Jarvis, S.

2011-04-01

X-ray fluorescence (XRF) scanning of unlithified, untreated sediment cores is becoming an increasingly common method used to obtain paleoproxy data from lake records. XRF-scanning is fast and delivers high-resolution records of relative variations in the elemental composition of the sediment. However, lake sediments display extreme variations in their organic matter content, which can vary from just a few percent to well over 50%. As XRF scanners are largely insensitive to organic material in the sediment, increasing levels of organic material effectively dilute those components that can be measured, such as the lithogenic material (the closed-sum effect). Consequently, in sediments with large variations in organic material, the measured variations in an element will to a large extent mirror the changes in organic material. It is therefore necessary to normalize the elements in the lithogenic component of the sediment against a conservative element to allow changes in the input of the elements to be addressed. In this study we show that Al, which is the lightest element that can be measured using the Itrax XRF-scanner, can be used to effectively normalize the elements of the lithogenic fraction of the sediment against variations in organic content. We also show that care must be taken when choosing resolution and exposure time to ensure optimal output from the measurements.

Extension to linear dynamics for hybrid stress finite element formulation based on additional displacements

NASA Astrophysics Data System (ADS)

Sumihara, K.

Based upon legitimate variational principles, one microscopic-macroscopic finite element formulation for linear dynamics is presented by Hybrid Stress Finite Element Method. The microscopic application of Geometric Perturbation introduced by Pian and the introduction of infinitesimal limit core element (Baby Element) have been consistently combined according to the flexible and inherent interpretation of the legitimate variational principles initially originated by Pian and Tong. The conceptual development based upon Hybrid Finite Element Method is extended to linear dynamics with the introduction of physically meaningful higher modes.

Trace Element Zoning and Incipient Metamictization in a Lunar Zircon: Application of Three Microprobe Techniques

NASA Technical Reports Server (NTRS)

Wopenka, Brigitte; Jollife, Bradley L.; Zinner, Ernst; Kremser, Daniel T.

1996-01-01

We have determined major (Si, Zr, Hf), minor (Al, Y, Fe, P), and trace element (Ca, Sc, Ti, Ba, REE, Th, U) concentrations and Raman spectra of a zoned, 200 microns zircon grain in lunar sample 14161,7069, a quartz monzodiorite breccia collected at the Apollo 14 site. Analyses were obtained on a thin section in situ with an ion microprobe, an electron microprobe, and a laser Raman microprobe. The zircon grain is optically zoned in birefringence, a reflection of variable (incomplete) metamictization resulting from zo- nation in U and Th concentrations. Variations in the concentrations of U and Th correlate strongly with those of other high-field-strength trace elements and with changes in Raman spectral parameters. Concentrations of U and Th range from 21 to 55 ppm and 6 to 31 ppm, respectively, and correlate with lower Raman peak intensities, wider Raman peaks, and shifted Si-O peak positions. Concentrations of heavy rare earth elements range over a factor of three to four and correlate with intensities of fluorescence peaks. Correlated variations in trace element concentrations reflect the original magmatic differentiation of the parental melt approx. 4 b.y. ago. Degradation of the zircon structure, as reflected by the observed Raman spectral parameters, has occurred in this sample over a range of alpha-decay event dose from approx. 5.2 x 10(exp 14) to 1.4 x 10(exp 15) decay events per milligram of zircon, as calculated from the U and Th concentrations. This dose is well below the approx. 10(exp 16) events per milligram cumulative dose that causes complete metamictization and indicates that laser Raman microprobe spectroscopy is an analytical technique that is very sensitive to the radiation-induced damage in zircon.

Elemental and Mineralogical Analysis of Silt Fraction from Site U1420, IODP Expedition 341

NASA Astrophysics Data System (ADS)

Salinas, J. K.; Jaeger, J. M.; Penkrot, M. L.

2016-12-01

In southeastern Alaska, the Chugach-St. Elias Mountains - the world's highest coastal mountain range - exhibit extreme topography due to the collision and subduction of the Yakutat microplate beneath the North American plate. The St. Elias orogen is younger than 30 Ma, with mountain building having occurred during a period of enhanced glacial erosion when erosive ice streams delivered sediment into the Gulf of Alaska. Integrated Ocean Drilling Program Expedition 341 set out to investigate the relationship between mountain building and glacial dynamics in the Gulf of Alaska. Sediment cores from site U1420 were collected, within the Bering trough, just offshore of the Bering Glacier. Analysis of Bering Trough seismic profiles demonstrates an evolution from tectonically-controlled to depositionally-controlled continental margin strata formation (Worthington et al., 2010). The goal of this study is to investigate the provenance of the silt-sized fraction (15-63 μm) of U1420 sediments across this transition in seismic facies using mineralogy and elemental geochemical analyses. XRD mineralogical analysis shows consistent downhole mineralogy with minor variations in relative peak intensities. Elemental ICP-MS geochemical analysis reveal concentrations of both major and trace elements to be very well constrained, with all major (Al, Ca, Fe, Mg, and Ti) and trace elemental data (Ce, Cr, Ga, La, Rb, Sc, Sr, Th, and Y) only varying downhole by few percent/ppm. Both the consistent downhole mineralogy and elemental data suggest that the provenance of the silt-sized sediment deposited offshore has not changed since initial deposition (<0.7 Ma). Comparison with onshore bedrock geochemistry and surface samples from the modern Gulf of Alaska indicate that U1420 silt is similar in composition to modern regional sediment sources and is a mixture of the different bedrock lithologies within the modern Bering Glacier drainage.

Evolutionary transitions in the Asteraceae coincide with marked shifts in transposable element abundance.

PubMed

Staton, S Evan; Burke, John M

2015-08-20

The transposable element (TE) content of the genomes of plant species varies from near zero in the genome of Utricularia gibba to more than 80% in many species. It is not well understood whether this variation in genome composition results from common mechanisms or stochastic variation. The major obstacles to investigating mechanisms of TE evolution have been a lack of comparative genomic data sets and efficient computational methods for measuring differences in TE composition between species. In this study, we describe patterns of TE evolution in 14 species in the flowering plant family Asteraceae and 1 outgroup species in the Calyceraceae to investigate phylogenetic patterns of TE dynamics in this important group of plants. Our findings indicate that TE families in the Asteraceae exhibit distinct patterns of non-neutral evolution, and that there has been a directional increase in copy number of Gypsy retrotransposons since the origin of the Asteraceae. Specifically, there is marked increase in Gypsy abundance at the origin of the Asteraceae and at the base of the tribe Heliantheae. This latter shift in genome composition has had a significant impact on the diversity and abundance distribution of TEs in a lineage-specific manner. We show that the TE-driven expansion of plant genomes can be facilitated by just a few TE families, and is likely accompanied by the modification and/or replacement of the TE community. Importantly, large shifts in TE composition may be correlated with major of phylogenetic transitions.

Trace elements transport in western Siberia rivers across a permafrost gradient

NASA Astrophysics Data System (ADS)

Pokrovsky, O. S.; Manasypov, R. M.; Loiko, S.; Krickov, I. A.; Kopysov, S. G.; Kolesnichenko, L. G.; Vorobyev, S. N.; Kirpotin, S. N.

2015-11-01

Towards a better understanding of trace element transport in permafrost-affected Earth surface environments, we sampled ∼ 60 large and small rivers (< 100 to ≤ 150 000 km2 watershed area) of Western Siberia Lowland (WSL) during spring flood and summer and winter base-flow across a 1500 km latitudinal gradient covering continuous, discontinuous, sporadic and permafrost-free zones. Analysis of ∼ 40 major and trace elements in dissolved (< 0.45 μm) fraction allowed establishing main environmental factors controlling the transport of metals and trace elements in rivers of this environmentally important region. No statistically significant effect of the basin size on most TE concentration was evidenced. Three category of trace elements were distinguished according to their concentration - latitude pattern: (i) increasing northward in spring and winter (Fe, Al, Ga (only winter), Ti (only winter), REEs, Pb, Zr, Hf, Th (only winter)), linked to leaching from peat and/or redox processes and transport in the form of Fe-rich colloids, (ii) decreasing northward during all seasons (Sr, Mo, U, As, Sb) marking the underground water influence of river feeding and (iii) elements without distinct trend from S to N whose variations within each latitude range were higher than the difference between latitudinal ranges (B, Li, Ti (except summer), Cr, V, Mn, Zn, Cd, Cs, Hf, Th). In addition to these general features, specific, northward increase during spring period was mostly pronounced for Fe, Mn, Co, Zn and Ba and may stem from a combination of enhanced leaching from the topsoil and vegetation and bottom waters of the lakes (spring overturn). A spring time northward decrease was observed for Ni, Cu, Zr, Rb. The southward increase in summer was strongly visible for Fe, Ni, Ba, Rb and V, probably due to peat/moss release (Ni, Ba, Rb) or groundwater feeding (Fe, V). The Principal Component Analysis demonstrated two main factors potentially controlling the ensemble of TE concentration variation. The first factor, responsible for 16-20 % of overall variation, included trivalent and tetravalent hydrolysates, Cr, V, and DOC and presumably reflected the presence of organo-mineral colloids, as also confirmed by previous studies in Siberian rivers. The 2nd factor (8-14 % variation) was linked to the latitude of the watershed and acted on elements affected by the groundwater feeding (DIC, Sr, Mo, As, Sb, U), whose concentration decreased significantly northward during all seasons. Overall, the rank of environmental factors on TE concentration in western Siberian rivers was latitude (3 permafrost zones) > season > watershed size. The effect of the latitude was minimal in spring for most TE but highly visible for Sr, Mo, Sb and U. The main factors controlling the shift of river feeding from surface and subsurface flow to deep underground flow in the permafrost-bearing zone were the depth of the active (unfrozen) seasonal layer and its position in organic or mineral horizons of the soil profile. In the permafrost-free zone, the relative role of carbonate mineral-bearing base rock feeding vs. bog water feeding determined the pattern of trace element concentration and fluxes in rivers of various size as a function of season. Comparison of obtained TE fluxes in WSL rivers with those of other subarctic rivers demonstrated reasonable agreement for most trace elements; the lithology of base rocks was the major factor controlling the magnitude of TE fluxes. The climate change in western Siberia and permafrost boundary migration will affect essentially the elements controlled by underground water feeding (DIC, alkaline-earth elements (Ca, Sr), oxyanions (Mo, Sb, As) and U). The thickening of the active layer may increase the export of trivalent and tetravalent hydrolysates in the form of organo-ferric colloids. Plant litter-originated divalent metals present as organic complexes may be retained via adsorption on mineral horizon. However, due to various counterbalanced processes controlling element source and sinks in plants - peat - mineral soil - river systems, the overall impact of the permafrost thaw on TE export from the land to the ocean may be smaller than that foreseen by merely active layer thickening and permafrost boundary shift.

Asynchronous variational integration using continuous assumed gradient elements.

PubMed

Wolff, Sebastian; Bucher, Christian

2013-03-01

Asynchronous variational integration (AVI) is a tool which improves the numerical efficiency of explicit time stepping schemes when applied to finite element meshes with local spatial refinement. This is achieved by associating an individual time step length to each spatial domain. Furthermore, long-term stability is ensured by its variational structure. This article presents AVI in the context of finite elements based on a weakened weak form (W2) Liu (2009) [1], exemplified by continuous assumed gradient elements Wolff and Bucher (2011) [2]. The article presents the main ideas of the modified AVI, gives implementation notes and a recipe for estimating the critical time step.

Long terminal repeat retrotransposons of Oryza sativa

PubMed Central

McCarthy, Eugene M; Liu, Jingdong; Lizhi, Gao; McDonald, John F

2002-01-01

Background Long terminal repeat (LTR) retrotransposons constitute a major fraction of the genomes of higher plants. For example, retrotransposons comprise more than 50% of the maize genome and more than 90% of the wheat genome. LTR retrotransposons are believed to have contributed significantly to the evolution of genome structure and function. The genome sequencing of selected experimental and agriculturally important species is providing an unprecedented opportunity to view the patterns of variation existing among the entire complement of retrotransposons in complete genomes. Results Using a new data-mining program, LTR_STRUC, (LTR retrotransposon structure program), we have mined the GenBank rice (Oryza sativa) database as well as the more extensive (259 Mb) Monsanto rice dataset for LTR retrotransposons. Almost two-thirds (37) of the 59 families identified consist of copia-like elements, but gypsy-like elements outnumber copia-like elements by a ratio of approximately 2:1. At least 17% of the rice genome consists of LTR retrotransposons. In addition to the ubiquitous gypsy- and copia-like classes of LTR retrotransposons, the rice genome contains at least two novel families of unusually small, non-coding (non-autonomous) LTR retrotransposons. Conclusions Each of the major clades of rice LTR retrotransposons is more closely related to elements present in other species than to the other clades of rice elements, suggesting that horizontal transfer may have occurred over the evolutionary history of rice LTR retrotransposons. Like LTR retrotransposons in other species with relatively small genomes, many rice LTR retrotransposons are relatively young, indicating a high rate of turnover. PMID:12372141

TEMPLE: analysing population genetic variation at transcription factor binding sites.

PubMed

Litovchenko, Maria; Laurent, Stefan

2016-11-01

Genetic variation occurring at the level of regulatory sequences can affect phenotypes and fitness in natural populations. This variation can be analysed in a population genetic framework to study how genetic drift and selection affect the evolution of these functional elements. However, doing this requires a good understanding of the location and nature of regulatory regions and has long been a major hurdle. The current proliferation of genomewide profiling experiments of transcription factor occupancies greatly improves our ability to identify genomic regions involved in specific DNA-protein interactions. Although software exists for predicting transcription factor binding sites (TFBS), and the effects of genetic variants on TFBS specificity, there are no tools currently available for inferring this information jointly with the genetic variation at TFBS in natural populations. We developed the software Transcription Elements Mapping at the Population LEvel (TEMPLE), which predicts TFBS, evaluates the effects of genetic variants on TFBS specificity and summarizes the genetic variation occurring at TFBS in intraspecific sequence alignments. We demonstrate that TEMPLE's TFBS prediction algorithms gives identical results to PATSER, a software distribution commonly used in the field. We also illustrate the unique features of TEMPLE by analysing TFBS diversity for the TF Senseless (SENS) in one ancestral and one cosmopolitan population of the fruit fly Drosophila melanogaster. TEMPLE can be used to localize TFBS that are characterized by strong genetic differentiation across natural populations. This will be particularly useful for studies aiming to identify adaptive mutations. TEMPLE is a java-based cross-platform software that easily maps the genetic diversity at predicted TFBSs using a graphical interface, or from the Unix command line. © 2016 John Wiley & Sons Ltd.

Young Prehistoric Kilauea Lava Flows From Uwekahuna Bluff, Hawaii: Mixed Source or Hybrid Magmas?

NASA Astrophysics Data System (ADS)

Marske, J. P.; Pietruszka, A. J.; Garcia, M. O.; Norman, M. D.; Rhodes, J. M.

2004-12-01

For the last 350 kyr, nearly the entire known compositional range of subaerial and submarine Kilauea lavas lie within the range defined by the volcano's historical eruptions. In contrast, Rhodes et al. (1989) discovered that some Kilauea lavas have Mauna Loa-like major-and trace-element signatures and concluded that Mauna Loa magmas may periodically invade Kilauea's shallow plumbing system. Here, we present new major- and trace- element data for 25 sequential prehistoric lava flows (0.5 to <2 ka) from the upper 55 m of the north wall of Kilauea caldera at Uwekahuna Bluff (UB). Although historical Kilauea and Mauna Loa lavas have been compositionally distinct for most of the last 230 kyr, our results show that the UB lavas span the geochemical spectrum between these neighboring volcanoes. At a given MgO content, the abundances of major elements (e.g., SiO2, TiO2, or CaO) in the UB lavas typically plot between historical Mauna Loa and Kilauea values, suggesting that these lavas originated from compositionally intermediate parental magmas or from hybridization between historical Kilauea- and Mauna Loa-type magmas. In contrast to the major element abundances, ratios of highly to moderately incompatible elements (e.g., Nb/Y) in the UB lavas are mostly Mauna Loa-like. These incompatible trace element ratios reveal a rapid fluctuation of Kilauea's lava composition since prehistoric times: (1) two lava flows at the base of the suite record a decrease in Nb/Y from historical Kilauea- to historical Mauna Loa-type values, (2) a weathered hiatus near the middle of the flow sequence coincides with a gradual Nb/Y minimum and reversal, and (3) the top three lava flows transition back into historical Kilauea-type Nb/Y values with a smooth temporal connection to the oldest historical lavas from this volcano. The systematic variations of these UB trace-element ratios may result from gradual mixing between Kilauea- and Mauna Loa-type magmas within the summit reservoir and/or varying degrees of partial melting of a Mauna Loa-like mantle heterogeneity within Kilauea's source region. Highly incompatible element ratios (e.g., Rb/Nb), which are typically unaffected by variable melt fraction, indicate that changes in the degree of partial melting alone cannot explain these Mauna Loa-like lava flows. Pb, Sr and Nd isotopic ratios of the Uwekahuna Bluff lavas will be presented to differentiate mantle source and melting effects from magma chamber processes.

The Surtsey Magma Series

PubMed Central

Ian Schipper, C.; Jakobsson, Sveinn P.; White, James D.L.; Michael Palin, J.; Bush-Marcinowski, Tim

2015-01-01

The volcanic island of Surtsey (Vestmannaeyjar, Iceland) is the product of a 3.5-year-long eruption that began in November 1963. Observations of magma-water interaction during pyroclastic episodes made Surtsey the type example of shallow-to-emergent phreatomagmatic eruptions. Here, in part to mark the 50th anniversary of this canonical eruption, we present previously unpublished major-element whole-rock compositions, and new major and trace-element compositions of sideromelane glasses in tephra collected by observers and retrieved from the 1979 drill core. Compositions became progressively more primitive as the eruption progressed, with abrupt changes corresponding to shifts between the eruption’s four edifices. Trace-element ratios indicate that the chemical variation is best explained by mixing of different proportions of depleted ridge-like basalt, with ponded, enriched alkalic basalt similar to that of Iceland’s Eastern Volcanic Zone; however, the systematic offset of Surtsey compositions to lower Nb/Zr than other Vestmannaeyjar lavas indicates that these mixing end members are as-yet poorly contained by compositions in the literature. As the southwestern-most volcano in the Vestmannaeyjar, the geochemistry of the Surtsey Magma Series exemplifies processes occurring within ephemeral magma bodies on the extreme leading edge of a propagating off-axis rift in the vicinity of the Iceland plume. PMID:26112644

Temporal variation in plankton assemblages and physicochemistry of Devils Lake, North Dakota

USGS Publications Warehouse

Leland, H.V.; Berkas, W.R.

1998-01-01

Seasonal and annual variation in biomass and structure of algal assemblages of hyposaline Devils Lake were examined in relation to turbidity, ambient concentrations of major ions, trace elements and nutrients, and the standing crop of herbivores. Lake level declined during the early years of study, but rose markedly in subsequent years as historically large volumes of water flowed into this hydrologically-closed basin. Winter algal assemblages were dominated (in biomass) most years by small, non-motile chlorophytes ( Choricystis minor, Kirchneriella lunaris or Dunaliella sp.), or Euglena sp. in the most saline sub-basin. Spring assemblages were dominated by diatoms (Stephanodiscus cf. minutulus, Surirella peisonis, Cyclotella meneghiniana and Entomoneis paludosa were especially prominent) or chlorophytes ( C. minor) until the lake level rose. C. minor abundances then declined in spring assemblages and diatoms ( Stephanodiscus cf. agassizensis and S. niagarae; E. paludosa in the more saline sub-basins) dominated. The potential for nitrogen-deficient conditions for phytoplankton growth was evidenced most summers and early autumns by consistently high concentrations of reactive-P relative to inorganic-N and blooms of the N-fixing cyanophyte Aphanizomenon flos-aquae; Microcystis aeruginosa typically was a co-dominant (>30% of biomass) in these assemblages. Pulses of diatoms ( S. cf. agassizensis and C. meneghiniana) occurred in summers following unusually prolonged periods of calm weather or large water inflows. Physical (irradiance, turbulence) and chemical (major nutrients) variables were the primary factors associated with phytoplankton growth. Transparency and major nutrient concentrations accounted for more of the annual variation in phytoplankton structure than did salinity. Seasonal abundance patterns of the dominant zooplankton (the copepod Diaptomus sicilis; the cladocerans Ceriodaphnia quadrangula, Chydorus sphaericus, Daphnia pulex and Diaphanosoma birgei; and the rotifers Brachionus spp., Filinia longiseta, Keratella cochlearis and K. quadrata) also indicated variation in algal populations related to grazing.

Some additional observations on inclusions in the granitic rocks of the Sierra Nevada

USGS Publications Warehouse

Dodge, F.C.W.; Kistler, R.W.

1990-01-01

Microgranular quartz diorite and diorite inclusions are widespread in central Sierra Nevada granitoid rocks and are almost exclusively restricted to hornblende-bearing rocks, most commonly felsic tonalites and mafic granodiorites. The Nd-Sm and Rb-Sr systematics indicate that most inclusions were in isotopic equilibrium with enclosing materials at the time of formation. Silica contents of inclusions and granitoids are contiguous, but inclusions generally contain less than, and granitoids more than, 60% SiO2. Ferric oxide and H2O+ trends relative to SiO2 suggests many inclusions formed as concentrations of hydrous mafic minerals. Variation of other major element oxides and trace elements support this inference. Most inclusions represent fragmented crystal accumulations of early-formed, near-liquidus minerals generated from these previously mixed magmas. -from Authors

Rare-earth abundances in chondritic meteorites

NASA Technical Reports Server (NTRS)

Evensen, N. M.; Hamilton, P. J.; Onions, R. K.

1978-01-01

Fifteen chondrites, including eight carbonaceous chondrites, were analyzed for rare earth element abundances by isotope dilution. Examination of REE for a large number of individual chondrites shows that only a small proportion of the analyses have flat unfractionated REE patterns within experimental error. While some of the remaining analyses are consistent with magmatic fractionation, many patterns, in particular those with positive Ce anomalies, can not be explained by known magmatic processes. Elemental abundance anomalies are found in all major chondrite classes. The persistence of anomalies in chondritic materials relatively removed from direct condensational processes implies that anomalous components are resistant to equilibrium or were introduced at a late stage of chondrite formation. Large-scale segregation of gas and condensate is implied, and bulk variations in REE abundances between planetary bodies is possible.

The Interaction of Genotype and Environment Determines Variation in the Maize Kernel Ionome

PubMed Central

Asaro, Alexandra; Ziegler, Gregory; Ziyomo, Cathrine; Hoekenga, Owen A.; Dilkes, Brian P.; Baxter, Ivan

2016-01-01

Plants obtain soil-resident elements that support growth and metabolism from the water-flow facilitated by transpiration and active transport processes. The availability of elements in the environment interacts with the genetic capacity of organisms to modulate element uptake through plastic adaptive responses, such as homeostasis. These interactions should cause the elemental contents of plants to vary such that the effects of genetic polymorphisms will be dramatically dependent on the environment in which the plant is grown. To investigate genotype by environment interactions underlying elemental accumulation, we analyzed levels of elements in maize kernels of the Intermated B73 × Mo17 (IBM) recombinant inbred population grown in 10 different environments, spanning a total of six locations and five different years. In analyses conducted separately for each environment, we identified a total of 79 quantitative trait loci (QTL) controlling seed elemental accumulation. While a set of these QTL was found in multiple environments, the majority were specific to a single environment, suggesting the presence of genetic by environment interactions. To specifically identify and quantify QTL by environment interactions (QEIs), we implemented two methods: linear modeling with environmental covariates, and QTL analysis on trait differences between growouts. With these approaches, we found several instances of QEI, indicating that elemental profiles are highly heritable, interrelated, and responsive to the environment. PMID:27770027

The Interaction of Genotype and Environment Determines Variation in the Maize Kernel Ionome.

PubMed

Asaro, Alexandra; Ziegler, Gregory; Ziyomo, Cathrine; Hoekenga, Owen A; Dilkes, Brian P; Baxter, Ivan

2016-12-07

Plants obtain soil-resident elements that support growth and metabolism from the water-flow facilitated by transpiration and active transport processes. The availability of elements in the environment interacts with the genetic capacity of organisms to modulate element uptake through plastic adaptive responses, such as homeostasis. These interactions should cause the elemental contents of plants to vary such that the effects of genetic polymorphisms will be dramatically dependent on the environment in which the plant is grown. To investigate genotype by environment interactions underlying elemental accumulation, we analyzed levels of elements in maize kernels of the Intermated B73 × Mo17 (IBM) recombinant inbred population grown in 10 different environments, spanning a total of six locations and five different years. In analyses conducted separately for each environment, we identified a total of 79 quantitative trait loci (QTL) controlling seed elemental accumulation. While a set of these QTL was found in multiple environments, the majority were specific to a single environment, suggesting the presence of genetic by environment interactions. To specifically identify and quantify QTL by environment interactions (QEIs), we implemented two methods: linear modeling with environmental covariates, and QTL analysis on trait differences between growouts. With these approaches, we found several instances of QEI, indicating that elemental profiles are highly heritable, interrelated, and responsive to the environment. Copyright © 2016 Asaro et al.

Multivariate classification of edible salts: Simultaneous Laser-Induced Breakdown Spectroscopy and Laser-Ablation Inductively Coupled Plasma Mass Spectrometry Analysis

NASA Astrophysics Data System (ADS)

Lee, Yonghoon; Nam, Sang-Ho; Ham, Kyung-Sik; Gonzalez, Jhanis; Oropeza, Dayana; Quarles, Derrick; Yoo, Jonghyun; Russo, Richard E.

2016-04-01

Laser-Induced Breakdown Spectroscopy (LIBS) and Laser-Ablation Inductively Coupled Plasma Mass Spectrometry (LA-ICP-MS), both based on laser ablation sampling, can be employed simultaneously to obtain different chemical fingerprints from a sample. We demonstrated that this analysis approach can provide complementary information for improved classification of edible salts. LIBS could detect several of the minor metallic elements along with Na and Cl, while LA-ICP-MS spectra were used to measure non-metallic and trace heavy metal elements. Principal component analysis using LIBS and LA-ICP-MS spectra showed that their major spectral variations classified the sample salts in different ways. Three classification models were developed by using partial least squares-discriminant analysis based on the LIBS, LA-ICP-MS, and their fused data. From the cross-validation performances and confusion matrices of these models, the minor metallic elements (Mg, Ca, and K) detected by LIBS and the non-metallic (I) and trace heavy metal (Ba, W, and Pb) elements detected by LA-ICP-MS provided complementary chemical information to distinguish particular salt samples.

μX-ray fluorescence analysis of traces and calcium phosphate phases on tooth tartar interfaces using synchrotron radiation

NASA Astrophysics Data System (ADS)

Abraham, J. A.; Grenón, M. S.; Sánchez, H. J.; Valentinuzzi, M. C.; Perez, C. A.

2007-07-01

Hard dental tissues like dentine and cementum with calcified deposits (dental calculi) were studied in several human dental pieces of adult individuals from the same geographic region. A couple of cross cuts were performed at dental root level resulting in a planar slice with calculus and dental tissue exposed for analysis. The elemental content along a linear path crossing the dentine-cementum-tartar interfaces and also all over a surface was measured by X-ray fluorescence microanalysis using synchrotron radiation (μSRXRF). The concentration of elemental traces like K, V, Cu, Zn, As, Br and Sr showed different features on the analyzed regions. The possible connections with the dynamic of mineralization and biological implications are discussed. The concentrations of major elements Ca and P were also determined and the measured Ca/P molar ratio was used to estimate the average composition of calcium phosphate phases in the measured points. A deeper knowledge of the variations of the elemental compositions and the changes of the different phases will help to a better understanding of the scarcely known mechanism of calculus growing.

Evaluation of carbonate diagenesis: A comparative study of minor elements, trace elements, and rare-earth elements (REE + Y) between Pleistocene corals and matrices from Grand Cayman, British West Indies

NASA Astrophysics Data System (ADS)

Li, Rong; Jones, Brian

2014-12-01

On Grand Cayman, the Pleistocene Ironshore Formation consists of six unconformity-bounded units of limestones that have been partially or completely altered to calcite by post-depositional meteoric diagenesis. In order to examine the diagenetic history from the perspective of geochemical elements, the concentrations of minor element (Sr, Na, Mg), trace elements (Ba, Fe, Mn, Al, Si), and rare-earth elements (REE) and yttrium (Y) were determined for 105 corals and 84 matrices collected from the Rogers Wreck Point (RWP), Western Onshore area (WO), and offshore George Town (GT) areas. With the transformation of aragonite to calcite, the Sr, Na, and Ba values decreased, but Mg increased, which are indicative of diagenetic alteration in an open water system. Due to intrinsic "vital effects" and the extrinsic diagenetic environment, the variations of Sr, Na, Ba, and Mg concentrations between Acropora and Montastrea from the GT area are different to those of their counterparts from RWP and WO. The signatures of Sr, Na, Ba, and Mg are in good agreement with the diagenetic history as determined from petrographic and stable isotopic criteria. The REE + Y (REY) concentrations (ΣREY) are higher in the matrices (0.2-6.9 ppm, average 2.6 ppm) than in the associated corals (0.1-5.4 ppm, average 0.6 ppm). Shale-normalized REY patterns of the Pleistocene Ironshore Formation are similar to those of oxygenated seawater, which are characterized by (1) light REE depletion relative to heavy REE (average DySN/SmSN = 1.7, n = 35), (2) positive La anomalies (average Pr/Pr* = 1.17, n = 53), and (3) negative Ce anomalies (average Ce/Ce* = 0.49, n = 53). The preserved seawater-like REY distribution pattern, the lack of correlation between ΣREY and mineralogy, and the lack of correlation between ΣREY and diagenesis-sensitive stable oxygen isotope (δ18O) indicate that meteoric diagenesis did not have a major impact on the REY distribution patterns. The matrices and corals in the GT area, compared to their counterparts from RWP and WO, have relatively less depleted LREE and lower Y in REY distribution pattern, suggesting contamination by minor amounts of detrital sediments. This is supported by the fact that limestones from the GT area contain abnormally high contents of detrital elements (Al, Si). The variations in ΣREY in carbonate rocks from locality to locality probably reflect variations that existed in the local depositional environments where these deposits originally formed.

A genetic determinant of the striatal dopamine response to alcohol in men

PubMed Central

Ramchandani, Vijay A.; Umhau, John; Pavon, Francisco J.; Ruiz-Velasco, Victor; Margas, Wojciech; Sun, Hui; Damadzic, Ruslan; Eskay, Robert; Schoor, Michael; Thorsell, Annika; Schwandt, Melanie L.; Sommer, Wolfgang H.; George, David T.; Parsons, Loren H.; Herscovitch, Peter; Hommer, Daniel; Heilig, Markus

2010-01-01

Excessive alcohol use, a major cause of morbidity and mortality, is less well understood than other addictive disorders. Dopamine release in ventral striatum is a common element of drug reward, but alcohol has an unusually complex pharmacology, and humans vary greatly in their alcohol responses. This variation is related to genetic susceptibility for alcoholism, which contributes more than half of alcoholism risk. Here, we report that a functional OPRM1 A118G polymorphism is a major determinant of striatal dopamine responses to alcohol. Social drinkers recruited based on OPRM1 genotype were challenged in separate sessions with alcohol and placebo under pharmacokinetically controlled conditions, and examined for striatal dopamine release using positron emission tomography and [11C]-raclopride displacement. A striatal dopamine response to alcohol was restricted to carriers of the minor 118G allele. To directly establish the causal role of OPRM1 A118G variation, we generated two humanized mouse lines, carrying the respective human sequence variant. Brain microdialysis showed a four-fold greater peak dopamine response to an alcohol challenge in h/mOPRM1-118GG than in h/mOPRM1-118AA mice. OPRM1 A118G variation is a genetic determinant of dopamine responses to alcohol, a mechanism by which it likely modulates alcohol reward. PMID:20479755

Timing of pyroxenite formation in supra-subduction Josephine Ophiolite, Oregon.

NASA Astrophysics Data System (ADS)

Hough, T.; Le Roux, V.; Kurz, M. D.

2017-12-01

The Josephine ophiolite is a partly dismembered ophiolite located in southern Oregon and northwestern California (USA). It displays a large ( 640 km2) mantle section that is mostly composed of depleted spinel harzburgite and lherzolite re-equilibrated at temperatures of 900 °C. In addition, the peridotite section of the ophiolite contains minor dunites and pyroxenite veins ranging from orthopyroxenites to clinopyroxenites. Using field, petrological and geochemical data, previous studies have shown that the peridotite experienced 10-20% of hydrous flux melting. In addition, clinopyroxene and orthopyroxene in harzburgites show variable degrees of light rare-earth element (LREE) enrichment, which suggests percolation and re-equilibration with small fractions of boninite melt. Overall, the trace element concentrations of pyroxenes indicate that the harzburgites experienced particularly high degrees of melting in the mantle wedge. We collected a number of orthopyroxenite and clinopyroxenite veins in the mantle section of the Josephine Ophiolite. Here we present the major and rare-earth element (REE) contents of pyroxene in 4 orthopyroxenites and 2 clinopyroxenites and calculate the major element and REE closure temperatures for individual veins. We show that individual pyroxenites record drastic variations in their degree of REE depletion, indicating that multiple generations of melts percolated the peridotite. The pyroxenite veins also record higher REE closure temperatures (>1200 ºC) compared to the surrounding peridotite, potentially indicating rapid cooling after emplacement. REE closure temperatures are also higher than major element closure temperatures. In parallel, we analyzed Sr isotopes by MC-ICPMS in pyroxene separates from 4 veins. Results indicate that the maximum age of emplacement of orthopyroxenite veins corresponds to the age of exhumation. Some clinopyroxenites may have formed during earlier melt percolation events. This study supports the idea that the composition of melts that percolate the mantle wedge can be highly variable and that orthopyroxenites may be the last type of veins to form in those environments.

Linking major and trace element headwater stream concentrations to DOC release and hydrologic conditions in a bog and peaty riparian zone

NASA Astrophysics Data System (ADS)

Broder, Tanja; Biester, Harald

2017-04-01

Peatlands and organic-rich riparian zones are known to export large amounts of dissolved organic carbon (DOC) to surface water. In organic-rich, acidic headwater streams main carriers for element export are dissolved organic matter (DOM) and organic-iron complexes. In this environment DOM might also act as major carrier for metals, which otherwise may have a low solubility. This study examines annual and short term event-based variations of major and trace elements in a headwater catchment. Patterns are used to trace hydrological pathways and element sources under different hydrologic preconditions. Furthermore, it elucidates the importance of DOC as carrier of different elements in a bog and a peaty riparian catchment. The study was conducted in a small headwater stream draining an ombrotrophic peatland with an adjacent forested area with peaty riparian soils in the Harz Mountains (Germany). Discharge sampling was conducted weekly at two sites from snowmelt to begin of snowfall and in high resolution during selected discharge events in 2013 and 2014. Element concentrations were measured by means of ICP-MS and ICP-OES. A PCA was performed for each site and for annual and event datasets. Results show that a large number of element concentrations strongly correlate with DOC concentrations at the bog site. Even elements like Ca and Mg, which are known to have a low affinity to DOC. Congruently, the first principal component integrates the DOC pattern (element loadings > 0.8: Ca, Fe, Mg, Mn, Zn, As, Sr, Cd, DOC) and explained about 35 % of total variance and even 50 % during rain events (loadings > 0.8: Al, Ca, Fe, Mg, Mn, Zn, Li, Co, As, Sr, Cd, Pb, DOC). The study cannot verify that all correlating elements bind to DOC. It is likely that also a common mobilization pattern in the upper peat layer by plant decomposition causes the same response to changes in hydrologic pathways. Additionally, a low mineral content and an enrichment of elements like Fe and Mn in the upper peat layers due to prevailing redox conditions might play a major role in a bog environment. At the peaty riparian zone only Ca, Fe, and Sr strongly correlated with DOC over the annual record. The PCA of the annual record display no clear DOC component here, but indicates that DOC is influenced by Component one (element loadings > 0.8: Ca, Mg, Zn, Co, Sr) and two (Al, V, La, Pb, U) suggesting different DOC sources in the peaty riparian zone. A large number of elements correlate with DOC during rain event sampling at the riparian zone. In contrast to the bog site the event-based riparian zone PCA distinguished a clear discharge related component with mineral, groundwater related elements (K, Rb, In, Cs, NO3- and SO42-). Pattern of the mineral and DOC components prove that during base flow discharge is generated in a shallow groundwater layer and successively increases upward to the organic-rich upper soil layer with increasing discharge. Contrarily, bog element pattern confirm a dominating surface-near discharge, due to high hydraulic conductivities.

Genetic link between EMI and EMII: An adakite connection

NASA Astrophysics Data System (ADS)

Shimoda, Gen

2009-10-01

Geochemical modeling of the origin of enriched mantle I (EMI) and enriched mantle II (EMII) is conducted from the perspective of adakite production. For the model, the average composition of adakites is re-estimated from published data for eighteen trace elements. Although the concentrations determined for highly incompatible elements are very high (about 100 times of primitive mantle), these high concentrations can be explained by melting of oceanic crust without sediment contribution. The compiled data further suggest that the mantle-slab melt reaction would play a major role in the production of basic adakites. In addition, crystal fractionation in the magma chamber should produce additional chemical variations in adakites, in particular for acidic adakites. To examine the effect of chemical variations on the isotopic composition of recycled adakites, broad correlations between trace elements and SiO 2 concentrations, and the MELTS program are employed. The results suggest that recycling of a basic adakite (SiO 2 = 55%) can account for EMI isotopic signatures with storage times of about 2.0 Gyr. The isotopic compositions of less-basic adakites and their evolved magmas shift towards EMII values with increasing SiO 2 concentrations. In particular, evolved acidic adakite can yield EMII isotopic signatures. These lines of evidence suggest that the recycling of adakites at various stages of evolution can conceivably produce the entire isotopic range between EMI and EMII reservoirs. Consequently, adakite recycling via sediment subduction or subduction erosion can account for the origins of EMI and EMII reservoirs. In this context, residual garnet under high pressure and plagioclase fractionation at low pressure might play an essential role in producing the chemical variations among adakites that ultimately govern the isotopic compositions of these geochemical reservoirs.

A 4-node assumed-stress hybrid shell element with rotational degrees of freedom

NASA Technical Reports Server (NTRS)

Aminpour, Mohammad A.

1990-01-01

An assumed-stress hybrid/mixed 4-node quadrilateral shell element is introduced that alleviates most of the deficiencies associated with such elements. The formulation of the element is based on the assumed-stress hybrid/mixed method using the Hellinger-Reissner variational principle. The membrane part of the element has 12 degrees of freedom including rotational or drilling degrees of freedom at the nodes. The bending part of the element also has 12 degrees of freedom. The bending part of the element uses the Reissner-Mindlin plate theory which takes into account the transverse shear contributions. The element formulation is derived from an 8-node isoparametric element. This process is accomplished by assuming quadratic variations for both in-plane and out-of-plane displacement fields and linear variations for both in-plane and out-of-plane rotation fields along the edges of the element. In addition, the degrees of freedom at midside nodes are approximated in terms of the degrees of freedom at corner nodes. During this process the rotational degrees of freedom at the corner nodes enter into the formulation of the element. The stress field are expressed in the element natural-coordinate system such that the element remains invariant with respect to node numbering.

Comparative Analysis of Transposable Elements Highlights Mobilome Diversity and Evolution in Vertebrates

PubMed Central

Chalopin, Domitille; Naville, Magali; Plard, Floriane; Galiana, Delphine; Volff, Jean-Nicolas

2015-01-01

Transposable elements (TEs) are major components of vertebrate genomes, with major roles in genome architecture and evolution. In order to characterize both common patterns and lineage-specific differences in TE content and TE evolution, we have compared the mobilomes of 23 vertebrate genomes, including 10 actinopterygian fish, 11 sarcopterygians, and 2 nonbony vertebrates. We found important variations in TE content (from 6% in the pufferfish tetraodon to 55% in zebrafish), with a more important relative contribution of TEs to genome size in fish than in mammals. Some TE superfamilies were found to be widespread in vertebrates, but most elements showed a more patchy distribution, indicative of multiple events of loss or gain. Interestingly, loss of major TE families was observed during the evolution of the sarcopterygian lineage, with a particularly strong reduction in TE diversity in birds and mammals. Phylogenetic trends in TE composition and activity were detected: Teleost fish genomes are dominated by DNA transposons and contain few ancient TE copies, while mammalian genomes have been predominantly shaped by nonlong terminal repeat retrotransposons, along with the persistence of older sequences. Differences were also found within lineages: The medaka fish genome underwent more recent TE amplification than the related platyfish, as observed for LINE retrotransposons in the mouse compared with the human genome. This study allows the identification of putative cases of horizontal transfer of TEs, and to tentatively infer the composition of the ancestral vertebrate mobilome. Taken together, the results obtained highlight the importance of TEs in the structure and evolution of vertebrate genomes, and demonstrate their major impact on genome diversity both between and within lineages. PMID:25577199

Comparative analysis of transposable elements highlights mobilome diversity and evolution in vertebrates.

PubMed

Chalopin, Domitille; Naville, Magali; Plard, Floriane; Galiana, Delphine; Volff, Jean-Nicolas

2015-01-09

Transposable elements (TEs) are major components of vertebrate genomes, with major roles in genome architecture and evolution. In order to characterize both common patterns and lineage-specific differences in TE content and TE evolution, we have compared the mobilomes of 23 vertebrate genomes, including 10 actinopterygian fish, 11 sarcopterygians, and 2 nonbony vertebrates. We found important variations in TE content (from 6% in the pufferfish tetraodon to 55% in zebrafish), with a more important relative contribution of TEs to genome size in fish than in mammals. Some TE superfamilies were found to be widespread in vertebrates, but most elements showed a more patchy distribution, indicative of multiple events of loss or gain. Interestingly, loss of major TE families was observed during the evolution of the sarcopterygian lineage, with a particularly strong reduction in TE diversity in birds and mammals. Phylogenetic trends in TE composition and activity were detected: Teleost fish genomes are dominated by DNA transposons and contain few ancient TE copies, while mammalian genomes have been predominantly shaped by nonlong terminal repeat retrotransposons, along with the persistence of older sequences. Differences were also found within lineages: The medaka fish genome underwent more recent TE amplification than the related platyfish, as observed for LINE retrotransposons in the mouse compared with the human genome. This study allows the identification of putative cases of horizontal transfer of TEs, and to tentatively infer the composition of the ancestral vertebrate mobilome. Taken together, the results obtained highlight the importance of TEs in the structure and evolution of vertebrate genomes, and demonstrate their major impact on genome diversity both between and within lineages. © The Author(s) 2015. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

Statistical tables and charts showing geochemical variation in the Mesoproterozoic Big Creek, Apple Creek, and Gunsight formations, Lemhi group, Salmon River Mountains and Lemhi Range, central Idaho

USGS Publications Warehouse

Lindsey, David A.; Tysdal, Russell G.; Taggart, Joseph E.

2002-01-01

The principal purpose of this report is to provide a reference archive for results of a statistical analysis of geochemical data for metasedimentary rocks of Mesoproterozoic age of the Salmon River Mountains and Lemhi Range, central Idaho. Descriptions of geochemical data sets, statistical methods, rationale for interpretations, and references to the literature are provided. Three methods of analysis are used: R-mode factor analysis of major oxide and trace element data for identifying petrochemical processes, analysis of variance for effects of rock type and stratigraphic position on chemical composition, and major-oxide ratio plots for comparison with the chemical composition of common clastic sedimentary rocks.

Residential heating contribution to level of air pollutants (PAHs, major, trace, and rare earth elements): a moss bag case study.

PubMed

Vuković, Gordana; Aničić Urošević, Mira; Pergal, Miodrag; Janković, Milan; Goryainova, Zoya; Tomašević, Milica; Popović, Aleksandar

2015-12-01

In areas with moderate to continental climates, emissions from residential heating system lead to the winter air pollution peaks. The EU legislation requires only the monitoring of airborne concentrations of particulate matter, As, Cd, Hg, Ni, and B[a]P. Transition metals and rare earth elements (REEs) have also arisen questions about their detrimental health effects. In that sense, this study examined the level of extensive set of air pollutants: 16 polycyclic aromatic hydrocarbons (PAHs), and 41 major elements, trace elements, and REEs using Sphagnum girgensohnii moss bag technique. During the winter of 2013/2014, the moss bags were exposed across Belgrade (Serbia) to study the influence of residential heating system to the overall air quality. The study was set as an extension to our previous survey during the summer, i.e., non-heating season. Markedly higher concentrations of all PAHs, Sb, Cu, V, Ni, and Zn were observed in the exposed moss in comparison to the initial values. The patterns of the moss REE concentrations normalized to North American Shale Composite and Post-Archean Australian Shales were identical across the study area but enhanced by anthropogenic activities. The results clearly demonstrate the seasonal variations in the moss enrichment of the air pollutants. Moreover, the results point out a need for monitoring of air quality during the whole year, and also of various pollutants, not only those regulated by the EU Directive.

Genetic Drift, Not Life History or RNAi, Determine Long-Term Evolution of Transposable Elements

PubMed Central

Szitenberg, Amir; Cha, Soyeon; Opperman, Charles H.; Bird, David M.; Blaxter, Mark L.; Lunt, David H.

2016-01-01

Abstract Transposable elements (TEs) are a major source of genome variation across the branches of life. Although TEs may play an adaptive role in their host’s genome, they are more often deleterious, and purifying selection is an important factor controlling their genomic loads. In contrast, life history, mating system, GC content, and RNAi pathways have been suggested to account for the disparity of TE loads in different species. Previous studies of fungal, plant, and animal genomes have reported conflicting results regarding the direction in which these genomic features drive TE evolution. Many of these studies have had limited power, however, because they studied taxonomically narrow systems, comparing only a limited number of phylogenetically independent contrasts, and did not address long-term effects on TE evolution. Here, we test the long-term determinants of TE evolution by comparing 42 nematode genomes spanning over 500 million years of diversification. This analysis includes numerous transitions between life history states, and RNAi pathways, and evaluates if these forces are sufficiently persistent to affect the long-term evolution of TE loads in eukaryotic genomes. Although we demonstrate statistical power to detect selection, we find no evidence that variation in these factors influence genomic TE loads across extended periods of time. In contrast, the effects of genetic drift appear to persist and control TE variation among species. We suggest that variation in the tested factors are largely inconsequential to the large differences in TE content observed between genomes, and only by these large-scale comparisons can we distinguish long-term and persistent effects from transient or random changes. PMID:27566762

Dynamical evolution of differentiated asteroid families

NASA Astrophysics Data System (ADS)

Martins-Filho, W. S.; Carvano, J.; Mothe-Diniz, T.; Roig, F.

2014-10-01

The project aims to study the dynamical evolution of a family of asteroids formed from a fully differentiated parent body, considering family members with different physical properties consistent with what is expected from the break up of a body formed by a metallic nucleus surrounded by a rocky mantle. Initially, we study the effects of variations in density, bond albedo, and thermal inertia in the semi-major axis drift caused by the Yarkovsky effect. The Yarkovsky effect is a non-conservative force caused by the thermal re-radiation of the solar radiation by an irregular body. In Solar System bodies, it is known to cause changes in the orbital motions (Peterson, 1976), eventually bringing asteroids into transport routes to near-Earth space, such as some mean motion resonances. We expressed the equations of variation of the semi-major axis directly in terms of physical properties (such as the mean motion, frequency of rotation, conductivity, thermal parameter, specific heat, obliquity and bond albedo). This development was based on the original formalism for the Yarkovsky effect (i.e., Bottke et al., 2006 and references therein). The derivation of above equations allowed us to closely study the variation of the semi-major axis individually for each physical parameter, clearly showing that the changes in semi-major axis for silicate bodies is twice or three times greater than for metal bodies. The next step was to calculate the orbital elements of a synthetic family after the break-up. That was accomplished assuming that the catastrophic disruption energy is given by the formalism described by Stewart and Leinhardt (2009) and assuming an isotropic distribution of velocities for the fragments of the nucleus and the mantle. Finally, the orbital evolution of the fragments is implemented using a simpletic integrator, and the result compared with the distribution of real asteroid families.

Analysis of magnetic fields using variational principles and CELAS2 elements

NASA Technical Reports Server (NTRS)

Frye, J. W.; Kasper, R. G.

1977-01-01

Prospective techniques for analyzing magnetic fields using NASTRAN are reviewed. A variational principle utilizing a vector potential function is presented which has as its Euler equations, the required field equations and boundary conditions for static magnetic fields including current sources. The need for an addition to this variational principle of a constraint condition is discussed. Some results using the Lagrange multiplier method to apply the constraint and CELAS2 elements to simulate the matrices are given. Practical considerations of using large numbers of CELAS2 elements are discussed.

Performance analysis and simulation of the SPS reference phase control system

NASA Technical Reports Server (NTRS)

Lindsey, W. C.; Chie, C. M.

1980-01-01

The major elements required in the operation of an SPS which employs retrodirectivity as a means of pointing the beam to Earth include the spacetenna, the rectenna, and the pilot signal transmitter. The phase control system is faced with several problems: (1) path delay variations due to imperfect SPS circular orbits; (2) ionospheric effects; (3) initial phase beam forming; (4) beam pointing; (5) beam safing; (6) high power phase noise effects; and (7) interference. The use of SOLARISM, a computer program to select pilot signal parameters and evaluate SPS performance is described.

Interfacing remote sensing and geographic information systems for global environmental change research

NASA Technical Reports Server (NTRS)

Lee, Jae K.; Randolph, J. C.; Lulla, Kamlesh P.; Helfert, Michael R.

1993-01-01

Because changes in the Earth's environment have become major global issues, continuous, longterm scientific information is required to assess global problems such as deforestation, desertification, greenhouse effects and climate variations. Global change studies require understanding of interactions of complex processes regulating the Earth system. Space-based Earth observation is an essential element in global change research for documenting changes in Earth environment. It provides synoptic data for conceptual predictive modeling of future environmental change. This paper provides a brief overview of remote sensing technology from the perspective of global change research.

Comprehensive analysis of Arabidopsis expression level polymorphisms with simple inheritance

PubMed Central

Plantegenet, Stephanie; Weber, Johann; Goldstein, Darlene R; Zeller, Georg; Nussbaumer, Cindy; Thomas, Jérôme; Weigel, Detlef; Harshman, Keith; Hardtke, Christian S

2009-01-01

In Arabidopsis thaliana, gene expression level polymorphisms (ELPs) between natural accessions that exhibit simple, single locus inheritance are promising quantitative trait locus (QTL) candidates to explain phenotypic variability. It is assumed that such ELPs overwhelmingly represent regulatory element polymorphisms. However, comprehensive genome-wide analyses linking expression level, regulatory sequence and gene structure variation are missing, preventing definite verification of this assumption. Here, we analyzed ELPs observed between the Eil-0 and Lc-0 accessions. Compared with non-variable controls, 5′ regulatory sequence variation in the corresponding genes is indeed increased. However, ∼42% of all the ELP genes also carry major transcription unit deletions in one parent as revealed by genome tiling arrays, representing a >4-fold enrichment over controls. Within the subset of ELPs with simple inheritance, this proportion is even higher and deletions are generally more severe. Similar results were obtained from analyses of the Bay-0 and Sha accessions, using alternative technical approaches. Collectively, our results suggest that drastic structural changes are a major cause for ELPs with simple inheritance, corroborating experimentally observed indel preponderance in cloned Arabidopsis QTL. PMID:19225455

Geographic authentication of Asian rice (Oryza sativa L.) using multi-elemental and stable isotopic data combined with multivariate analysis.

PubMed

Chung, Ill-Min; Kim, Jae-Kwang; Lee, Kyoung-Jin; Park, Sung-Kyu; Lee, Ji-Hee; Son, Na-Young; Jin, Yong-Ik; Kim, Seung-Hyun

2018-02-01

Rice (Oryza sativa L.) is the world's third largest food crop after wheat and corn. Geographic authentication of rice has recently emerged asan important issue for enhancing human health via food safety and quality assurance. Here, we aimed to discriminate rice of six Asian countries through geographic authentication using combinations of elemental/isotopic composition analysis and chemometric techniques. Principal components analysis could distinguish samples cultivated from most countries, except for those cultivated in the Philippines and Japan. Furthermore, orthogonal projection to latent structure-discriminant analysis provided clear discrimination between rice cultivated in Korea and other countries. The major common variables responsible for differentiation in these models were δ 34 S, Mn, and Mg. Our findings contribute to understanding the variations of elemental and isotopic compositions in rice depending on geographic origins, and offer valuable insight into the control of fraudulent labeling regarding the geographic origins of rice traded among Asian countries. Copyright © 2017 Elsevier Ltd. All rights reserved.

The application of the high throughput sequencing technology in the transposable elements.

PubMed

Liu, Zhen; Xu, Jian-hong

2015-09-01

High throughput sequencing technology has dramatically improved the efficiency of DNA sequencing, and decreased the costs to a great extent. Meanwhile, this technology usually has advantages of better specificity, higher sensitivity and accuracy. Therefore, it has been applied to the research on genetic variations, transcriptomics and epigenomics. Recently, this technology has been widely employed in the studies of transposable elements and has achieved fruitful results. In this review, we summarize the application of high throughput sequencing technology in the fields of transposable elements, including the estimation of transposon content, preference of target sites and distribution, insertion polymorphism and population frequency, identification of rare copies, transposon horizontal transfers as well as transposon tagging. We also briefly introduce the major common sequencing strategies and algorithms, their advantages and disadvantages, and the corresponding solutions. Finally, we envision the developing trends of high throughput sequencing technology, especially the third generation sequencing technology, and its application in transposon studies in the future, hopefully providing a comprehensive understanding and reference for related scientific researchers.

Finite Element Analysis of Flexural Vibrations in Hard Disk Drive Spindle Systems

NASA Astrophysics Data System (ADS)

LIM, SEUNGCHUL

2000-06-01

This paper is concerned with the flexural vibration analysis of the hard disk drive (HDD) spindle system by means of the finite element method. In contrast to previous research, every system component is here analytically modelled taking into account its structural flexibility and also the centrifugal effect particularly on the disk. To prove the effectiveness and accuracy of the formulated models, commercial HDD systems with two and three identical disks are selected as examples. Then their major natural modes are computed with only a small number of element meshes as the shaft rotational speed is varied, and subsequently compared with the existing numerical results obtained using other methods and newly acquired experimental ones. Based on such a series of studies, the proposed method can be concluded as a very promising tool for the design of HDDs and various other high-performance computer disk drives such as floppy disk drives, CD ROM drives, and their variations having spindle mechanisms similar to those of HDDs.

Petrology and geochronology of metamorphosed volcanic rocks and a middle Cretaceous volcanic neck in the east-central Sierra Nevada, California.

USGS Publications Warehouse

Kistler, R.W.; Swanson, S.E.

1981-01-01

Metamorphosed Mesozoic volcanic rocks from the E-central Sierra Nevada range in composition from basalt to rhyolite and have ages, based on whole rock Rb-Sr and U-Pb zircon dating, of about 237- 224, 185, 163, 134, and 100Ma. The major plutons of the batholith in this area are of Triassic (215-200Ma) and Cretaceous (94-80Ma) ages. Initial 87Sr/86Sr values for the metamorphosed volcanic rocks of the area are in the range from 0.7042 to 0.7058 and are generally different from the values for the surrounding batholithic rocks (0.7056-0.7066). A circular, zoned granitic pluton, with an outcrop area of 2.5km2, similar in appearance to a ring dike complex, was apparently a conduit for some or possibly all of the middle-Cretaceous metamorphosed volcanic rocks exposed about 5km to the S in the western part of the Ritter Range. Samples from the metamorphosed volcanic rocks and the pluton yield a Rb/Sr whole rock isochron age of 99.9+ or -2.2Ma with an intitial 87Sr/86Sr of 0.7048+ or -0.00001. Major element variation diagrams of the pluton and volcanic rocks define coincident compositional trends. The ages of volcanic events relative to the ages of the major intrusive epochs and the major element and isotopic compositions of the volcanic rocks relative to the major plutons indicate that the volcanic rocks are not simply or directly related to the major plutons in the Sierra Nevada. -from Authors

Response of hot element flush wall gauges in oscillating laminar flow

NASA Technical Reports Server (NTRS)

Giddings, T. A.; Cook, W. J.

1986-01-01

The time dependent response characteristics of flush-mounted hot element gauges used as instruments to measure wall shear stress in unsteady periodic air flows were investigated. The study was initiated because anomalous results were obtained from the gauges in oscillating turbulent flows for the phase relation of the wall shear stress variation, indicating possible gauge response problems. Flat plate laminar oscillating turbulent flows characterized by a mean free stream velocity with a superposed sinusoidal variation were performed. Laminar rather than turbulent flows were studied, because a numerical solution for the phase angle between the free stream velocity and the wall shear stress variation that is known to be correct can be obtained. The focus is on comparing the phase angle indicated by the hot element gauges with corresponding numerical prediction for the phase angle, since agreement would indicate that the hot element gauges faithfully follow the true wall shear stress variation.

Thermal-Hydraulic Transient Analysis of a Packed Particle Bed Reactor Fuel Element

DTIC Science & Technology

1990-06-01

long fuel elements, arranged to form a core , were analyzed for an up-power transient from 0 MWt to approximately 18 MWt. The simple model significantly...VARIATIONS IN FUEL ELEMENT GEOMETRY ............. 60 4.4 VARIATIONS IN THE MANNER OF TRANSIENT CONTROL ..... 62 4.5 CORE REPRESENTATION BY MULTIPLE FUEL ...the HTGR , however, the PBR packs small fuel particles between inner and outer retention elements, designated as frits. The PBR is appropriate for a

Magma Chamber of the 26.5 ka Oruanui Eruption, Taupo Volcano, New Zealand

NASA Astrophysics Data System (ADS)

Liu, Y.; Anderson, A. T.; Wilson, C. J.; Davis, A. M.

2004-12-01

We have investigated melt inclusions and their host quartz crystals from the Bishop-Tuff-sized 26.5 ka Oruanui eruption at Taupo volcano, New Zealand. Compositions (major and trace elements, H2O and CO2) of melt inclusions and cathodoluminescence (CL) images of quartz were obtained for eight individual pumices from early, middle and late depositional units. All melt inclusions are high-silica weakly peraluminous rhyolites. Melt inclusions for different eruptive phases have similar ranges of H2O contents (3.8-5.2 wt %), but late-erupted samples have higher CO2 contents (mostly > 140 ppm). A positive correlation between CO2 and compatible trace elements such as Sr suggests that crystallization and melt entrapment occurred under gas-saturated conditions. Trace elements variations in melt inclusions are consistent with fractionation of 30-40 wt % crystals (plagioclase+quartz+pyroxene+amphibole). Crystal contents in pumices, trace-element contents in melt inclusions, and CL zoning patterns of quartz show no correlation with eruptive phases, suggesting that the Oruanui magma was well mixed before eruption. Some Oruanui quartz crystals contain distinctive CL zonings with a jagged ('restitic') core mantled by a black CL zone. Trace element variations in melt inclusions in the 'restitic' cores are consistent with fractionation of Ba-bearing minerals such as sanidine and/or biotite, both of which are rare or absent in rocks erupted from Taupo volcanic center. The above evidence suggests that Oruanui rhyolite is generated by assimilation of previous intruded rocks or country rocks, differentiated by crystal fractionation, and then mixed prior to eruption. Despite the differences in trace element and volatile contents, and crystal assemblages, both Bishop Tuff and Oruanui magmas involve crystal fractionation as one of the main differentiation mechanisms during their evolution. However, there are pronounced differences in the pre-eruptive stratification of the two chambers, which may reflect the tectonic settings, eruption rates, and ages of the systems.

Barium and calcium analyses in sediment cores using µ-XRF core scanners

NASA Astrophysics Data System (ADS)

Acar, Dursun; Çaǧatay, Namık; Genç, S. Can; Eriş, K. Kadir; Sarı, Erol; Uçarkus, Gülsen

2017-04-01

Barium and Ca are used as proxies for organic productivity in paleooceanographic studies. With its heavy atomic weight (137.33 u), barium is easily detectable in small concentrations (several ppm levels) in marine sediments using XRF methods, including the analysis by µ-XRF core scanners. Calcium has an intermediate atomic weight (40.078 u) but is a major element in the earth's crust and in sediments and sedimentary rocks, and hence it is easily detectable by µ-XRF techniques. Normally, µ-XRF elemental analysis of cores are carried out using split half cores or 1-2 cm thich u-channels with an original moisture. Sediment cores show variation in different water content (and porosity) along their length. This in turn results in variation in the XRF counts of the elements and causes error in the elemental concentrations. We tried µ-XRF elemental analysis of split half cores, subsampled as 1 cm thick u-channels with original moisture and 0.3 mm-thin film slices of the core with original wet sample and after air drying with humidity protector mylar film. We found considerable increase in counts of most elements, and in particular for Ba and Ca, when we used 0.3 mm thin film, dried slice. In the case of Ba, the counts increased about three times that of the analysis made with wet and 1 cm thick u-channels. The higher Ba and Ca counts are mainly due to the possible precipitation of Ba as barite and Ca as gypsum from oxidation of Fe-sulphides and the evaporation of pore waters. The secondary barite and gypsum precipitation would be especially serious in unoxic sediment units, such as sapropels, with considerable Fe-sulphides and bio-barite.It is therefore suggested that reseachers should be cautious of such secondary precipitation on core surfaces when analyzing cores that have long been exposed to the atmospheric conditions.

The provenance and chemical variation of sandstones associated with the Mid-continent Rift System, U.S.A.

USGS Publications Warehouse

Cullers, R.L.; Berendsen, P.

1998-01-01

Sandstones along the northern portion of the Precambrian Mid-continent Rift System (MRS) have been petrographically and chemically analyzed for major elements and a variety of trace elements, including the REE. After the initial extrusion of the abundant basalts along the MRS, dominantly volcaniclastic sandstones of the Oronto Group were deposited. These volcaniclastic sandstones are covered by quartzose and subarkosic sandstones of the Bayfield Group. Thus the sandstones of the Oronto Group were derived from previously extruded basalts, whereas, the sandstones of the Bayfield Group were derived from Precambrian granitic gneisses located on the rift flanks. The chemical variation of these sandstones closely reflects the changing detrital modes with time. The elemental composition of the sandstones confirms the source lithologies suggested by the mineralogy and clasts. The Oronto Group sandstones contain lower ratios of elements concentrated in silicic source rocks (La or Th) relative to elements concentrated in basic source rocks (Co, Cr, or Sc) than the Bayfield Group. Also, the average size of the negative Eu anomaly of the sandstones of the Oronto Group is significantly less (Eu/Eu* mean ?? standard deviation = 0.79 ?? 0.13) than that of the Bayfield Group (mean + standard deviation = 0.57 ?? 0.09), also suggesting a more basic source for the former than the latter. Mixing models of elemental ratios give added insight as to the evolution of the rift. These models suggest that the volcanistic sandstones of the lower portion of the Oronto Group are derived from about 80 to 90 percent basalt and 10 to 20 percent granitoids. The rest of the Oronto Group and the lower to middle portion of the Bayfield Group could have formed by mixing of about 30 to 60 percent basalt and 40 to 70 percent granitoids. The upper portion of the Bayfield Group is likely derived from 80 to 100 percent granitoids and zero to 20 percent basalt.

Back-arc with frontal-arc component origin of Triassic Karmutsen basalt, British Columbia, Canada

USGS Publications Warehouse

Barker, F.; Sutherland, Brown A.; Budahn, J.R.; Plafker, G.

1989-01-01

The largely basaltic, ???4.5-6.2-km-thick, Middle to Upper Triassic Karmutsen Formation is a prominent part of the Wrangellian sequence. Twelve analyses of major and minor elements of representative samples of pillowed and massive basalt flows and sills from Queen Charlotte and Vancouver Islands are ferrotholeiites that show a range of 10.2-3.8% MgO (as normalized, H2O- and CO2-free) and related increases in TiO2 (1.0-2.5%), Zr (43-147 ppm) and Nb (5-16 ppm). Other elemental abundances are not related simply to MgO: distinct groupings are evident in Al2O3, Na2O and Cr, but considerable scatter is present in FeO* (FeO + 0.9Fe2O3) and CaO. Some of the variation is attributed to alteration during low-rank metamorphism or by seawater - including variation of Ba, Rb, Sr and Cu, but high-field-strength elements (Sc, Ti, Y, Zr and Nb) as well as Cr, Ni, Cu and rare-earth elements (REE's) were relatively immobile. REE's show chondrite-normalized patterns ranging from light-REE depleted to moderately light-REE enriched. On eleven discriminant plots these analyses fall largely into or across fields of within-plate basalt (WIP), normal or enriched mid-ocean-ridge tholeiite (MORB) and island-arc tholeiite (IAT). Karmutsen basalts are chemically identical to the stratigraphically equivalent Nikolai Greenstone of southern Alaska and Yukon Territory. These data and the fact that the Karmutsen rests on Sicker Group island-arc rocks of Paleozoic age suggest to us that: 1. (1) the basal arc, after minor carbonate-shale deposition, underwent near-axial back-arc rifting (as, e.g., the Mariana arc rifted at different times); 2. (2) the Karmutsen basalts were erupted along this rift or basin as "arc-rift" tholeiitite; and 3. (3) after subsequent deposition of carbonates and other rocks, and Jurassic magmatism, a large fragment of this basalt-sediment-covered island arc was accreted to North America as Wrangellia. The major- and minor-elemental abundances of Karmutsen basalt is modeled by first mixing primitive arc magma with enriched basaltic liquid derived either from garnet peridotite or metasomatized mantle, followed by fractionation of olivine, pyroxenes, plagioclase and spinel. ?? 1989.

Impacts of Changes of Indoor Air Pressure and Air Exchange Rate in Vapor Intrusion Scenarios

PubMed Central

Shen, Rui; Suuberg, Eric M.

2016-01-01

There has, in recent years, been increasing interest in understanding the transport processes of relevance in vapor intrusion of volatile organic compounds (VOCs) into buildings on contaminated sites. These studies have included fate and transport modeling. Most such models have simplified the prediction of indoor air contaminant vapor concentrations by employing a steady state assumption, which often results in difficulties in reconciling these results with field measurements. This paper focuses on two major factors that may be subject to significant transients in vapor intrusion situations, including the indoor air pressure and the air exchange rate in the subject building. A three-dimensional finite element model was employed with consideration of daily and seasonal variations in these factors. From the results, the variations of indoor air pressure and air exchange rate are seen to contribute to significant variations in indoor air contaminant vapor concentrations. Depending upon the assumptions regarding the variations in these parameters, the results are only sometimes consistent with the reports of several orders of magnitude in indoor air concentration variations from field studies. The results point to the need to examine more carefully the interplay of these factors in order to quantitatively understand the variations in potential indoor air exposures. PMID:28090133

Impacts of Changes of Indoor Air Pressure and Air Exchange Rate in Vapor Intrusion Scenarios.

PubMed

Shen, Rui; Suuberg, Eric M

2016-02-01

There has, in recent years, been increasing interest in understanding the transport processes of relevance in vapor intrusion of volatile organic compounds (VOCs) into buildings on contaminated sites. These studies have included fate and transport modeling. Most such models have simplified the prediction of indoor air contaminant vapor concentrations by employing a steady state assumption, which often results in difficulties in reconciling these results with field measurements. This paper focuses on two major factors that may be subject to significant transients in vapor intrusion situations, including the indoor air pressure and the air exchange rate in the subject building. A three-dimensional finite element model was employed with consideration of daily and seasonal variations in these factors. From the results, the variations of indoor air pressure and air exchange rate are seen to contribute to significant variations in indoor air contaminant vapor concentrations. Depending upon the assumptions regarding the variations in these parameters, the results are only sometimes consistent with the reports of several orders of magnitude in indoor air concentration variations from field studies. The results point to the need to examine more carefully the interplay of these factors in order to quantitatively understand the variations in potential indoor air exposures.

Siderophile Volatile Element Partitioning during Core Formation.

NASA Astrophysics Data System (ADS)

Loroch, D. C.; Hackler, S.; Rohrbach, A.; Klemme, S.

2017-12-01

Since the nineteen sixties it is known, that the Earth's mantle is depleted relative to CI chondrite in numerous elements as a result of accretion and core-mantle differentiation. Additionally, if we take the chondritic composition as the initial solar nebular element abundances, the Earth lacks 85 % of K and up to 98 % of other volatiles. However one potentially very important group of elements has received considerably less attention in this context and these elements are the siderophile but volatile elements (SVEs). SVEs perhaps provide important information regarding the timing of volatile delivery to Earth. Especially for the SVEs the partitioning between metal melt and silicate melt (Dmetal/silicate) at core formation conditions is poorly constrained, never the less they are very important for most of the core formation models. This study is producing new metal-silicate partitioning data for a wide range of SVEs (S, Se, Te, Tl, Ag, As, Au, Cd, Bi, Pb, Sn, Cu, Ge, Zn, In and Ga) with a focus on the P, T and fO2dependencies. The initial hypothesis that we are aiming to test uses the accretion of major portions of volatile elements while the core formation was still active. The key points of this study are: - What are the effects of P, T and fO2 on SVE metal-silicate partioning? - What is the effect of compositional complexity on SVE metal-silicate partioning? - How can SVE's D-values fit into current models of core formation? The partitioning experiments will be performed using a Walker type multi anvil apparatus in a pressure range between 10 and 20 GPa and temperatures of 1700 up to 2100 °C. To determine the Dmetal/silicate values we are using a field emission high-resolution JEOL JXA-8530F EPMA for major elements and a Photon Machines Analyte G2 Excimer laser (193 nm) ablation system coupled to a Thermo Fisher Element 2 single-collector ICP-MS (LA-ICP-MS) for the trace elements. We recently finished the first sets of experiments and can provide the corresponding datasets. Based on the general understanding of Dmetal/silicate values we expect to depend on the composition, in this particular case this means a variation in sulfur and carbon content of the core composition, and also a change of the redox conditions. The major goal however is to derive a model of core formation on Earth that includes and also explains the SVEs.

Geochemistry and petrology of selected coal samples from Sumatra, Kalimantan, Sulawesi, and Papua, Indonesia

USGS Publications Warehouse

Belkin, H.E.; Tewalt, S.J.; Hower, J.C.; Stucker, J.D.; O'Keefe, J.M.K.

2009-01-01

Indonesia has become the world's largest exporter of thermal coal and is a major supplier to the Asian coal market, particularly as the People's Republic of China is now (2007) and perhaps may remain a net importer of coal. Indonesia has had a long history of coal production, mainly in Sumatra and Kalimantan, but only in the last two decades have government and commercial forces resulted in a remarkable coal boom. A recent assessment of Indonesian coal-bed methane (CBM) potential has motivated active CBM exploration. Most of the coal is Paleogene and Neogene, low to moderate rank and has low ash yield and sulfur (generally < 10 and < 1??wt.%, respectively). Active tectonic and igneous activity has resulted in significant rank increase in some coal basins. Eight coal samples are described that represent the major export and/or resource potential of Sumatra, Kalimantan, Sulawesi, and Papua. Detailed geochemistry, including proximate and ultimate analysis, sulfur forms, and major, minor, and trace element determinations are presented. Organic petrology and vitrinite reflectance data reflect various precursor flora assemblages and rank variations, including sample composites from active igneous and tectonic areas. A comparison of Hazardous Air Pollutants (HAPs) elements abundance with world and US averages show that the Indonesian coals have low combustion pollution potential.

Variations in the chemical composition of cassava ( Manihot esculenta Crantz) leaves and roots as affected by genotypic and environmental variation.

PubMed

Burns, Anna Elizabeth; Gleadow, Roslyn Margaret; Zacarias, Anabela M; Cuambe, Constantino Estevão; Miller, Rebecca Elizabeth; Cavagnaro, Timothy Richard

2012-05-16

The purpose of this study was to assess the quality of cassava cultivars, in terms of cyanogenic potential and composition of macro- and micronutrients, sampled from different locations in rural Mozambique. Total cyanide concentrations in fresh cassava tissues were measured using portable cyanide testing kits, and elemental nutrients were later analyzed from dried plant tissue. Variation in cyanogenic potential and nutrient composition occurred both among cultivars and across locations. The majority of cultivars contained >100 ppm total cyanide, fresh weight, and are therefore considered to be dangerously poisonous unless adequately processed before consumption. Leaf cyanogenic and nutrient content varied with plant water status, estimated using carbon isotope discrimination (δ(13)C). The colonization of roots of all cultivars by arbuscular mycorrhizal fungi was also quantified and found to be high, indicating that mycorrhizas could play a key role in plant nutrient acquisition in these low-input farming systems.

The fate of moderately volatile elements during planetary formation in the inner Solar System

NASA Astrophysics Data System (ADS)

Pringle, E. A.; Moynier, F.

2017-12-01

Moderately volatile element abundances are variable among inner Solar System bodies, with differing degrees of depletion compared to chondrites. These variations are a consequence of the processes of planetary formation. The conditions and the specific mechanisms of planetary accretion and differentiation can be investigated by analyzing the stable isotope compositions of terrestrial and extraterrestrial samples. The moderately volatile lithophile elements are particularly useful to distinguish between the effects of accretion and those of core formation. Recent work has shown isotope variations in inner Solar System bodies for the moderately volatile elements Zn and K. The purely lithophile nature of Rb (in contrast to Zn) and the higher volatility of Rb compared to K make Rb an ideal element with which to further study moderately volatile element depletion. We have developed a new method for the high-precision measurement of Rb isotope ratios by MC-ICP-MS. Terrestrial rocks define a narrow range in Rb isotope composition, indicating that Rb isotope fractionation during igneous differentiation is limited (<30 ppm/amu). Larger Rb isotope variations are observed in extraterrestrial materials. Carbonaceous chondrites display a trend toward lighter Rb isotope composition coupled with decreasing Rb/Sr, opposite to the effect expected if their volatile element variations were caused by evaporative loss of Rb. This relationship indicates that the volatile element abundance variations in carbonaceous chondrites are not due to evaporation or condensation, but rather are due to the mixing of chemically and isotopically distinct primordial reservoirs. In contrast, there is a clear signature of Rb loss during evaporation in volatile-depleted achondrites and lunar rocks. Significant heavy isotope enrichments (up to several per mil for 87Rb/85Rb) are found for volatile-depleted planetesimals, including eucrites. In addition, lunar rocks also display heavy Rb isotope enrichments compared to the BSE. The most likely cause of these variations is Rb isotope fractionation due to evaporation during accretion.

A Model for Determining Strength for Embedded Elliptical Crack in Ultra-high-temperature Ceramics

PubMed Central

Wang, Ruzhuan; Li, Weiguo

2015-01-01

A fracture strength model applied at room temperature for embedded elliptical crack in brittle solid was obtained. With further research on the effects of various physical mechanisms on material strength, a thermo-damage strength model for ultra-high-temperature ceramics was applied to each temperature phase. Fracture strength of TiC and the changing trends with elliptical crack shape variations under different temperatures were studied. The study showed that under low temperature, the strength is sensitive to the crack shape variation; as the temperature increases, the sensitivities become smaller. The size of ellipse’s minor axes has great effect on the material strength when the ratio of ellipse’s minor and major axes is lower than 0.5, even under relatively high temperatures. The effect of the minor axes of added particle on material properties thus should be considered under this condition. As the crack area is set, the fracture strength decreases firstly and then increases with the increase of ratio of ellipse’s minor and major axes, and the turning point is 0.5. It suggests that for the added particles the ratio of ellipse’s minor and major axes should not be 0.5. All conclusions significantly coincided with the results obtained by using the finite element software ABAQUS. PMID:28793488

A Model for Determining Strength for Embedded Elliptical Crack in Ultra-high-temperature Ceramics.

PubMed

Wang, Ruzhuan; Li, Weiguo

2015-08-05

A fracture strength model applied at room temperature for embedded elliptical crack in brittle solid was obtained. With further research on the effects of various physical mechanisms on material strength, a thermo-damage strength model for ultra-high-temperature ceramics was applied to each temperature phase. Fracture strength of TiC and the changing trends with elliptical crack shape variations under different temperatures were studied. The study showed that under low temperature, the strength is sensitive to the crack shape variation; as the temperature increases, the sensitivities become smaller. The size of ellipse's minor axes has great effect on the material strength when the ratio of ellipse's minor and major axes is lower than 0.5, even under relatively high temperatures. The effect of the minor axes of added particle on material properties thus should be considered under this condition. As the crack area is set, the fracture strength decreases firstly and then increases with the increase of ratio of ellipse's minor and major axes, and the turning point is 0.5. It suggests that for the added particles the ratio of ellipse's minor and major axes should not be 0.5. All conclusions significantly coincided with the results obtained by using the finite element software ABAQUS.

Mobile element biology – new possibilities with high-throughput sequencing

PubMed Central

Xing, Jinchuan; Witherspoon, David J.; Jorde, Lynn B.

2014-01-01

Mobile elements compose more than half of the human genome, but until recently their large-scale detection was time-consuming and challenging. With the development of new high-throughput sequencing technologies, the complete spectrum of mobile element variation in humans can now be identified and analyzed. Thousands of new mobile element insertions have been discovered, yielding new insights into mobile element biology, evolution, and genomic variation. We review several high-throughput methods, with an emphasis on techniques that specifically target mobile element insertions in humans, and we highlight recent applications of these methods in evolutionary studies and in the analysis of somatic alterations in human cancers. PMID:23312846

Elemental mercury in the atmosphere of a tropical Amazonian forest (French Guiana)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Amouroux, D.; Wasserman, J.C.Tessier, E.; Donard, O.F.X.

1999-09-01

Gaseous atmospheric mercury was investigated at two sites of a tropical Amazonian forest (French Guiana) in the Petit Inini River basin and the Petit Saut Lake in June, 1998. Gaseous atmospheric mercury was identified as elemental mercury (Hg{sup 0}). Diurnal variation of atmospheric Hg{sup 0} in both studied aquatic environments were significantly correlated with air temperature and anticorrelated with relative humidity. Average Hg{sup 0} concentrations were higher above the Petit Inini River that the Petit Saut Lake. Background Hg{sup 0} concentrations in the Petit Inini River basin were higher than those observed in remote environments. These data suggest that goldmore » mining activity (i.e., Petit Inini River basin) may influence mercury mobilization in tropical forest ecosystems and that atmospheric transfer is a major pathway for mercury cycling in these environments.« less

Spatial variation in total element concentration in soil within the Northern Great Plains coal region, and regional soil chemistry in Bighorn and Wind River basins, Wyoming and Montana

USGS Publications Warehouse

Severson, R.C.; Tidball, R.R.

1979-01-01

PART A: To objectively determine the changes in chemical character of an area subjected to mining and reclamation, prior information is needed. This study represents a broadscale inventory of total chemical composition of the surficial materials of the Northern Great Plains coal region (western North and South Dakota, eastern Montana, and northeastern Wyoming); data are given for 41 elements in A and C soil horizons. An unbalanced, nested, analysis-of-variance design was used to quantify variation in total content of elements between glaciated and unglaciated terrains, for four increasingly smaller geographic scales, and to quantify variation due to sample preparation and analysis. From this statistical study, reliable maps on a regional basis (>100 km) were prepared for C, K, and Rb in A and C soil horizons; for N a, Si, Th, D, and Zn in A-horizon soil; and for As, Ca, Ge, and Mg in C-horizon soil. The distribution of variance components for the remaining 29 elements did not permit the construction of reliable maps. Therefore, a baseline value for each of these elements is given as a measure of the total element concentration in the soils of the Northern Great Plains coal region. The baseline is expressed as the 95-percent range in concentration to be expected in samples of natural soils. PART B: A reconnaissance study of total concentrations of 38 elements in samples of soils (0-40 cm deep, composite) from the Bighorn and Wind River Basins of Montana and Wyoming indicates that the geographic variation for most elements occurs locally (5 km or less). However, in the Bighorn Basin, Zn exhibits significant regional variation (between geologic units); and in the Wind River Basin, AI, Cr, K, Mn, Mo, Ni, U, and V exhibit similar variation. For the remaining elements, the lack of regional variation suggests that a single summary statistic can be used to estimate a baseline value that reflects the range in concentration to be expected in samples of soils in each basin. The concentrations of most of these elements in both basins are not much different from those measured independently in the Powder River Basin of Wyoming or in the Western United States. In addition, data from an analysis of variance provide an estimate of the number of random samples within an area of specified size (10 km square, approximately a township) that are needed to prepare a reliable map of total element concentration in soils for each of the elements in each of the basins.

Loess as an environmental archive of atmospheric trace element deposition

NASA Astrophysics Data System (ADS)

Blazina, T.; Winkel, L. H.

2013-12-01

Environmental archives such as ice cores, lake sediment cores, and peat cores have been used extensively to reconstruct past atmospheric deposition of trace elements. These records have provided information about how anthropogenic activities such as mining and fossil fuel combustion have disturbed the natural cycles of various atmospherically transported trace elements (e.g. Pb, Hg and Se). While these records are invaluable for tracing human impacts on such trace elements, they often provide limited information about the long term natural cycles of these elements. An assumption of these records is that the observed variations in trace element input, prior to any assumed anthropogenic perturbations, represent the full range of natural variations. However, records such as those mentioned above which extend back to a maximum of ~400kyr may not capture the potentially large variations of trace element input occurring over millions of years. Windblown loess sediments, often representing atmospheric deposition over time scales >1Ma, are the most widely distributed terrestrial sediments on Earth. These deposits have been used extensively to reconstruct continental climate variability throughout the Quaternary and late Neogene periods. In addition to being a valuable record of continental climate change, loess deposits may represent a long term environmental archive of atmospheric trace element deposition and may be combined with paleoclimate records to elucidate how fluctuations in climate have impacted the natural cycle of such elements. Our research uses the loess-paleosol deposits on the Chinese Loess Plateau (CLP) to quantify how atmospheric deposition of trace elements has fluctuated in central China over the past 6.8Ma. The CLP has been used extensively to reconstruct past changes of East Asian monsoon system (EAM). We present a suite of trace element concentration records (e.g. Pb, Hg, and Se) from the CLP which exemplifies how loess deposits can be used as an environmental archive to reconstruct long term natural variations in atmospheric trace element input. By comparing paleomonsoon proxy data with geochemical data we can directly correlate variations in atmospheric trace element input to fluctuations in the EAM. For example we are able to link Se input into the CLP to EAM derived precipitation. In interglacial climatic periods from 2.3-1.56Ma and 1.50-1.29Ma, we find very strong positive correlations between Se concentration and the summer monsoon index, a proxy for effective precipitation. In later interglacial periods from 1.26-0.83Ma and 0.78-0.16Ma, we find dust input plays a greater role. Our findings demonstrate that the CLP is a valuable environmental archive of atmospheric trace element deposition and suggest that other loess deposits worldwide may serve as useful records for investigating long term natural variations in atmospheric trace element cycling.

Compositional Variations of Paleogene and Neogene Tephra From the Northern Izu-Bonin-Mariana Arc

NASA Astrophysics Data System (ADS)

Tepley, F. J., III; Barth, A. P.; Brandl, P. A.; Hickey-Vargas, R.; Jiang, F.; Kanayama, K.; Kusano, Y.; Li, H.; Marsaglia, K. M.; McCarthy, A.; Meffre, S.; Savov, I. P.; Yogodzinski, G. M.

2014-12-01

A primary objective of IODP Expedition 351 was to evaluate arc initiation processes of the Izu-Bonin-Mariana (IBM) volcanic arc and its compositional evolution through time. To this end, a single thick section of sediment overlying oceanic crust was cored in the Amami Sankaku Basin where a complete sediment record of arc inception and evolution is preserved. This sediment record includes ash and pyroclasts, deposited in fore-arc, arc, and back-arc settings, likely associated with both the ~49-25 Ma emergent IBM volcanic arc and the evolving Ryukyu-Kyushu volcanic arc. Our goal was to assess the major element evolution of the nascent and evolving IBM system using the temporally constrained record of the early and developing system. In all, more than 100 ash and tuff layers, and pyroclastic fragments were selected from temporally resolved portions of the core, and from representative fractions of the overall core ("core catcher"). The samples were prepared to determine major and minor element compositions via electron microprobe analyses. This ash and pyroclast record will allow us to 1) resolve the Paleogene evolutionary history of the northern IBM arc in greater detail; 2) determine compositional variations of this portion of the IBM arc through time; 3) compare the acquired data to an extensive whole rock and tephra dataset from other segments of the IBM arc; 4) test hypotheses of northern IBM arc evolution and the involvement of different source reservoirs; and 5) mark important stratigraphic markers associated with the Neogene volcanic history of the adjacent evolving Ryukyu-Kyushu arc.

Modeling of resistive sheets in finite element solutions

NASA Technical Reports Server (NTRS)

Jin, J. M.; Volakis, John L.; Yu, C. L.; Woo, Alex C.

1992-01-01

A formulation is presented for modeling a resistive card in the context of the finite element method. The appropriate variational function is derived and for variational purposes results are presented for the scattering by a metal-backed cavity loaded with a resistive card.

Nature and origin of the sedimentary pile subducting in the Nankai Through

NASA Astrophysics Data System (ADS)

Chauvel, C.; Garcon, M.; Yobregat, E.; Chipoulet, C.; Labanieh, S.

2013-12-01

Nd-Hf isotopes and trace and major element concentrations were measured on bulk sediments recovered at Site C0012 during IODP Expedition 322 and 333 in the Shikoku basin. We analyzed the composition of different lithologies such as clay, claystone, sand, sandstone, and ash layers, all through the sedimentary pile, from the surface to the sediment-basalt interface, in order to identify compositional trends and source variations with depth. Major and trace element contents of the background sediments (hemipelagic mudstone) are very homogenous and span a relatively small range of values throughout the entire sedimentary pile. Their composition resembles that of the average upper continental crust of Rudnick and Gao (2003, Treatise on Geochemistry, Vol.3, p. 1-64). Nd and Hf isotopes are more variable, relatively unradiogenic (-8 < ɛNd < -3 ; -4 < ɛHf < +5) but display no systematic variations with depth (Fig. 1). Such isotopic compositions indicate that the background sedimentation of the Shikoku basin may consist of volcaniclastic material from the Izu-Bonin and/or Ryukyu arcs, detrital material eroded from SW Japan and relatively high amount of an evolved continental-derived component, probably Chinese loess as already suggested by Mahomet (2005, Sediment. Geol., 182, p.183-199). Compared to the background sedimentation, volcanic ash layers and volcaniclastic sandstones have very different trace element patterns and more radiogenic Nd-Hf isotopic signature (Fig. 1). Our results allow us to distinguish at least two different volcanic sources for these deposits. At the bottom of the sedimentary pile, siliciclastic sandstones with a mid-Miocene age are present; they have remarkably low ɛNd and ɛHf values (i.e. ɛNd < -8 and ɛHf < -5). Such isotopic compositions clearly demonstrate that their source cannot be the Japanese mainland, as suggested by previous studies (e.g. Underwood et al, 2009, Exp.322 PR ; Fergusson, 2003, Proc. ODP, Sci. Results 190/196). These sandstones are also too coarse to result from an accumulation of Chinese loess transported by wind (particles usually finer than 40 μm). Given the location of the Shikoku basin at 15Ma, we suggest that the siliciclastic sandstones mainly consists of detrital materials transported by Chinese rivers up to the sea in the Shikoku basin. Variations of ɛNd as a function of depth. Potential sediment sources are indicated by color bands

PIXE analysis of medieval silver coins

DOE Office of Scientific and Technical Information (OSTI.GOV)

Abdelouahed, H. Ben, E-mail: habdelou@cern.ch; Gharbi, F.; Roumie, M.

2010-01-15

We applied the proton-induced X-ray emission (PIXE) analytical technique to twenty-eight medieval silver coins, selected from the Tunisian treasury. The purpose is to study the fineness evolution from the beginning of the 7th to the 15th centuries AD. Each silver coin was cleaned with a diluted acid solution and then exposed to a 3 MeV proton beam from a 1.7 MV tandem accelerator. To allow the simultaneous detection of light and heavy elements, a funny aluminum filter was positioned in front of the Si(Li) detector entrance which is placed at 135{sup o} to the beam direction. The elements Cu, Pb,more » and Au were observed in the studied coins along with the major component silver. The concentration of Ag, presumably the main constituent of the coins, varies from 55% to 99%. This significant variation in the concentration of the major constituent reveals the economical difficulties encountered by each dynasty. It could be also attributed to differences in the composition of the silver mines used to strike the coins in different locations. That fineness evolution also reflects the poor quality of the control practices during this medieval period. In order to verify the ability of PIXE analytical method to distinguish between apparently similar coins, we applied hierarchical cluster analysis to our results to classify them into different subgroups of similar elemental composition.« less

Variation in a surface-exposed region of the Mycoplasma pneumoniae P40 protein as a consequence of homologous DNA recombination between RepMP5 elements.

PubMed

Spuesens, Emiel B M; van de Kreeke, Nick; Estevão, Silvia; Hoogenboezem, Theo; Sluijter, Marcel; Hartwig, Nico G; van Rossum, Annemarie M C; Vink, Cornelis

2011-02-01

Mycoplasma pneumoniae is a human pathogen that causes a range of respiratory tract infections. The first step in infection is adherence of the bacteria to the respiratory epithelium. This step is mediated by a specialized organelle, which contains several proteins (cytadhesins) that have an important function in adherence. Two of these cytadhesins, P40 and P90, represent the proteolytic products from a single 130 kDa protein precursor, which is encoded by the MPN142 gene. Interestingly, MPN142 contains a repetitive DNA element, termed RepMP5, of which homologues are found at seven other loci within the M. pneumoniae genome. It has been hypothesized that these RepMP5 elements, which are similar but not identical in sequence, recombine with their counterpart within MPN142 and thereby provide a source of sequence variation for this gene. As this variation may give rise to amino acid changes within P40 and P90, the recombination between RepMP5 elements may constitute the basis of antigenic variation and, possibly, immune evasion by M. pneumoniae. To investigate the sequence variation of MPN142 in relation to inter-RepMP5 recombination, we determined the sequences of all RepMP5 elements in a collection of 25 strains. The results indicate that: (i) inter-RepMP5 recombination events have occurred in seven of the strains, and (ii) putative RepMP5 recombination events involving MPN142 have induced amino acid changes in a surface-exposed part of the P40 protein in two of the strains. We conclude that recombination between RepMP5 elements is a common phenomenon that may lead to sequence variation of MPN142-encoded proteins.

Interspecific hybridization as a genomic stressor inducing mobilization of transposable elements in Drosophila

PubMed Central

Guerreiro, Maria Pilar García

2014-01-01

Transposable elements (TEs) are DNA sequences able to be mobilized in host genomes. They are currently recognized as the major mutation inducers because of their insertion in the target, their effect on neighboring regions, or their ectopic recombination. A large number of factors including chemical and physical factors as well as intraspecific crosses have traditionally been identified as inducers of transposition. Besides environmental factors, interspecific crosses have also been proposed as promoters of transposition of particular TEs in plants and different animals. Our previous published work includes a genome-wide survey with the set of genomic TEs and shows that interspecific hybridization between the species Drosophila buzzatii and Drosophila koepferae induces genomic instability by transposition bursts. A high percentage of this instability corresponds to TEs belonging to classes I and II. The detailed study of three TEs (Osvaldo, Helena, and Galileo), representative of the different TE families, shows an increase of transposition in hybrids compared with parental species, that varies depending on the element. This study suggests ample variation in TE regulation mechanisms and the question is why this variation occurs. Interspecific hybridization is a genomic stressor that disrupts the stability of TEs probably contributing to a relaxation of the mechanisms controlling TEs in the Drosophila genome. In this commentary paper we will discuss these results and the molecular mechanisms that could explain these increases of transposition rates observed in interspecific Drosophila hybrids. PMID:25136509

Strain Variation in the Transcriptome of the Dengue Fever Vector, Aedes aegypti.

PubMed

Bonizzoni, Mariangela; Dunn, W Augustine; Campbell, Corey L; Olson, Ken E; Marinotti, Osvaldo; James, Anthony A

2012-01-01

Studies of transcriptome dynamics provide a basis for understanding functional elements of the genome and the complexity of gene regulation. The dengue vector mosquito, Aedes aegypti, exhibits great adaptability to diverse ecological conditions, is phenotypically polymorphic, and shows variation in vectorial capacity to arboviruses. Previous genome sequencing showed richness in repetitive DNA and transposable elements that can contribute to genome plasticity. Population genetic studies revealed a varying degree of worldwide genetic polymorphism. However, the extent of functional genetic polymorphism across strains is unknown. The transcriptomes of three Ae. aegypti strains, Chetumal (CTM), Rexville D-Puerto Rico (Rex-D) and Liverpool (LVP), were compared. CTM is more susceptible than Rex- D to infection by dengue virus serotype 2. A total of 4188 transcripts exhibit either no or small variation (<2-fold) among sugar-fed samples of the three strains and between sugar- and blood-fed samples within each strain, corresponding most likely to genes encoding products necessary for vital functions. Transcripts enriched in blood-fed mosquitoes encode proteins associated with catalytic activities, molecular transport, metabolism of lipids, carbohydrates and amino acids, and functions related to blood digestion and the progression of the gonotropic cycle. Significant qualitative and quantitative differences were found in individual transcripts among strains including differential representation of paralogous gene products. The majority of immunity-associated transcripts decreased in accumulation after a bloodmeal and the results are discussed in relation to the different susceptibility of CTM and Rex-D mosquitoes to DENV2 infection.

The effects of sorting by aeolian processes on the geochemical characteristics of surface materials: a wind tunnel experiment

NASA Astrophysics Data System (ADS)

Wang, Xunming; Lang, Lili; Hua, Ting; Zhang, Caixia; Li, Hui

2018-03-01

The geochemical characteristics of aeolian and surface materials in potential source areas of dust are frequently employed in environmental reconstructions as proxies of past climate and as source tracers of aeolian sediments deposited in downwind areas. However, variations in the geochemical characteristics of these aeolian deposits that result from near-surface winds are currently poorly understood. In this study, we collected surface samples from the Ala Shan Plateau (a major potential dust source area in Central Asia) to determine the influence of aeolian processes on the geochemical characteristics of aeolian transported materials. Correlation analyses show that compared with surface materials, the elements in transported materials (e.g., Cu, As, Pb, Mn, Zn, Al, Ca, Fe, Ga, K, Mg, P, Rb, Co, Cr, Na, Nb, Si, and Zr) were subjected to significant sorting by aeolian processes, and the sorting also varied among different particle size fractions and elements. Variations in wind velocity were significantly correlated with the contents of Cr, Ga, Sr, Ca, Y, Nd, Zr, Nb, Ba, and Al, and with the Zr/Al, Zr/Rb, K/Ca, Sr/Ca, Rb/Sr, and Ca/Al ratios. Given the great variation in the geochemical characteristics of materials transported under different aeolian processes relative to those of the source materials, these results indicate that considerable uncertainty may be introduced to analyses by using surface materials to trace the potential source areas of aeolian deposits that accumulate in downwind areas.

Identification of structural variation in mouse genomes.

PubMed

Keane, Thomas M; Wong, Kim; Adams, David J; Flint, Jonathan; Reymond, Alexandre; Yalcin, Binnaz

2014-01-01

Structural variation is variation in structure of DNA regions affecting DNA sequence length and/or orientation. It generally includes deletions, insertions, copy-number gains, inversions, and transposable elements. Traditionally, the identification of structural variation in genomes has been challenging. However, with the recent advances in high-throughput DNA sequencing and paired-end mapping (PEM) methods, the ability to identify structural variation and their respective association to human diseases has improved considerably. In this review, we describe our current knowledge of structural variation in the mouse, one of the prime model systems for studying human diseases and mammalian biology. We further present the evolutionary implications of structural variation on transposable elements. We conclude with future directions on the study of structural variation in mouse genomes that will increase our understanding of molecular architecture and functional consequences of structural variation.

The controls on the major and trace element variations of shales, siltstones, and sandstones of Pennsylvanian-Permian age from uplifted continental blocks in Colorado to platform sediment in Kansas, USA

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cullers, R.L.

Shales, siltstones, and sandstones of Pennsylvanian-Permian age from near the source in Colorado to those in the platform in eastern Colorado and Kansas have been analyzed for major elements and a number of trace elements, including the REEs. The near-source sandstones are significantly more enriched (Student t-test at better than the 99% confidence level) in SiO[sub 2] and Na[sub 2]O concentrations and more depleted in Al[sub 2]O[sub 3], Fe[sub 2]O[sub 3] (total), TiO[sub 2], Th, Hf, Sc, Cr, Cs, REEs, Y, and Ni concentrations and La/Co and La/Ni ratios than the near-source shales and siltstones, most likely due to moremore » plagioclase and quartz and less clay minerals in the sandstones than in the shales and siltstones. There are no significant differences in K[sub 2]O and Sr concentrations and Eu/Eu*, La/Lu, La/SC, Th/Sc, Th/Co, and Cr/Th ratios between the near-source sandstones and the near-source shales and siltstones. Samples of the Molas, Hermosa, and Cutler formations near the source that were formed in different environments in the same area contain no significant difference in Eu/Eu, La/Lu, La/Sc, Th/Sc, Th/Co, and Cr/Th ratios, so a generally silicic source and not the environment of deposition was most important in producing these elemental ratios.« less

Effects of trochanteric soft tissue thickness and hip impact velocity on hip fracture in sideways fall through 3D finite element simulations.

PubMed

Majumder, Santanu; Roychowdhury, Amit; Pal, Subrata

2008-09-18

A major worldwide health problem is hip fracture due to sideways fall among the elderly population. The effects of sideways fall on the hip are required to be investigated thoroughly. The objectives of this study are to evaluate the responses to trochanteric soft tissue thickness (T) variations and hip impact velocity (V) variations during sideways fall based on a previously developed CT scan derived 3D non-linear and non-homogeneous finite element model of pelvis-femur-soft tissue complex with simplified biomechanical representation of the whole body. This study is also aimed at quantifying the effects [peak impact force (F(max)), time to F(max), acceleration and peak principal compressive strain (epsilon(max))] of these variations (T,V) on hip fracture. It was found that under constant impact energy, for 81% decrease in T (26-5mm), F(max) and epsilon(max) increased by 38% and 97%, respectively. Hence, decrease in T (as in slimmer persons) strongly correlated to risk for hip fracture (phi) and strain ratio (SR) by 0.972 and 0.988, respectively. Also under same T and body weight, for 75% decrease in V (4.79-1.2m/s), F(max) and epsilon(max) decreased by 70% and 86%, respectively. Hence, increase in V (as in taller persons) strongly correlated to phi and SR by 0.995 and 0.984, respectively. For both variations in T and V, inter-trochanteric fracture situations were well demonstrated by phi as well as by SR and strain contours, similar to clinically observed fractures. These quantifications would be helpful for effective design of person-specific hip protective devices.

Identification of Regulatory DNA Elements Using Genome-wide Mapping of DNase I Hypersensitive Sites during Tomato Fruit Development.

PubMed

Qiu, Zhengkun; Li, Ren; Zhang, Shuaibin; Wang, Ketao; Xu, Meng; Li, Jiayang; Du, Yongchen; Yu, Hong; Cui, Xia

2016-08-01

Development and ripening of tomato fruit are precisely controlled by transcriptional regulation, which depends on the orchestrated accessibility of regulatory proteins to promoters and other cis-regulatory DNA elements. This accessibility and its effect on gene expression play a major role in defining the developmental process. To understand the regulatory mechanism and functional elements modulating morphological and anatomical changes during fruit development, we generated genome-wide high-resolution maps of DNase I hypersensitive sites (DHSs) from the fruit tissues of the tomato cultivar "Moneymaker" at 20 days post anthesis as well as break stage. By exploring variation of DHSs across fruit development stages, we pinpointed the most likely hypersensitive sites related to development-specific genes. By detecting binding motifs on DHSs of these development-specific genes or genes in the ascorbic acid biosynthetic pathway, we revealed the common regulatory elements contributing to coordinating gene transcription of plant ripening and specialized metabolic pathways. Our results contribute to a better understanding of the regulatory dynamics of genes involved in tomato fruit development and ripening. Copyright © 2016 The Author. Published by Elsevier Inc. All rights reserved.

Spatial variability of trace elements and sources for improved exposure assessment in Barcelona

NASA Astrophysics Data System (ADS)

Minguillón, María Cruz; Cirach, Marta; Hoek, Gerard; Brunekreef, Bert; Tsai, Ming; de Hoogh, Kees; Jedynska, Aleksandra; Kooter, Ingeborg M.; Nieuwenhuijsen, Mark; Querol, Xavier

2014-06-01

Trace and major elements concentrations in PM10 and PM2.5 were measured at 20 sites spread in the Barcelona metropolitan area (1 rural background, 6 urban background, 13 road traffic sites) and at 1 reference site. Three 2-week samples per site and size fraction were collected during 2009 using low volume samplers, adding a total of 120 samples. Collected samples were analysed for elemental composition using Energy Dispersive X-ray fluorescence (XRF). EC, OC, and hopanes and steranes concentrations in PM2.5 were determined. Positive Matrix Factorisation (PMF) model was used for a source apportionment analysis. The work was performed as part of the ESCAPE project. Elements were found in concentrations within the usual range in Spanish urban areas. Mineral elements were measured in higher concentrations during the warm season, due to enhanced resuspension; concentrations of fueloil combustion elements were also higher in summer. Elements in higher concentration at the traffic sites were: Ba, Cr, Cu, Fe, Mn, Mo, Pb, Sn, Zn and Zr. Spatial variations related to non-traffic sources were observed for concentrations of Br, Cl, K, and Na (sea salt origin) and Ni, V and S (shipping emissions), which were higher at the coastal sites, as well as for Zn and Pb, higher at sites closer to industrial facilities. Five common sources for PM10 and PM2.5 were identified by PMF: road traffic (with tracers Ba, Cr, Cu, Fe, Mo and Zn); fueloil combustion (Ni and V); secondary sulphate; industry (Pb and Zn); and mineral source (Al, Ca, Mg, Si, Sr and Ti). A marine aerosol source, a mixture of sea salt with aged anthropogenic aerosols, was found only in PM10. EC, hopanes and steranes concentrations correlate strongly with the PM10 road traffic source contributions, being hence all attributed to the same source. OC may arise from other sources in addition to road traffic and have a high contribution of secondary OC. Significant spatial and temporal variation in the PM2.5 and PM10 elemental composition was found. Spatial patterns differed per element, related to the main source. The identified source contributions can be used in health studies of source-specific particles.

[Variation characteristics and environmental significant of trace elements under rainfall condition in karst groundwater].

PubMed

Chen, Xue-Bin; Yang, Ping-Heng; Lan, Jia-Cheng; Mo, Xue; Shi, Yang

2014-01-01

Chemical dynamics of Qingmuguan karst groundwater system were continuously monitored during the rainfall events. A series of high-resolution concentrations data on trace elements, such as barium, strontium, iron, manganese, aluminum, and other major elements were acquired. Correlation analysis and analysis of concentration curve were employed to identify the sources and migration path of the trace elements. And the formation process of trace elements in groundwater was discussed with the geological background of underground river basin. Research shows that barium and strontium derived from carbonate dissolution appeared to be stored in features such as fissures and pores. These two ions were recharged into the underground river by diffusion during precipitation, which resulted in small changes in the their concentration. However total iron, total manganese and aluminum derived from soil erosion varied relatively widely with strong response to rainfall, attributing to the migration of total iron and aluminum with overland flow to recharge the subterranean river directly via sinkholes while total manganese via soil-rock porous media. The results showed that concentrations of all the five trace elements were below 1 mg x L(-1), and the highest concentrations of total iron, total manganese and aluminum exceeded the limit of drinking water. To some extent, the concentrations of total iron and aluminum may be an indicator for soil erosion and water quality.

Allometry and apparent paradoxes in human limb proportions: Implications for scaling factors.

PubMed

Auerbach, Benjamin M; Sylvester, Adam D

2011-03-01

It has been consistently demonstrated that human proximal limb elements exhibit negative allometry, while distal elements scale with positive allometry. Such scaling implies that longer limbs will have higher intralimb indices, a phenomenon not borne out by empirical analyses. This, therefore, creates a paradox within the limb allometry literature. This study shows that these apparently conflicting results are the product of two separate phenomena. First, the use of the geometric mean of limb elements produces allometry coefficients that are not independent, and that when using ordinary least squares regression must yield an average slope of one. This phenomenon argues against using the geometric mean as a size variable when examining limb allometry. While the employment of relevant dimensions independent of those under analysis to calculate the geometric mean--as suggested by Coleman (Am J Phys Anthropol 135 (2008) 404-415)--may be a partial method for resolving the problem, an empirically determined, independent and biologically relevant size variable is advocated. If stature is used instead of the geometric mean as an independent size variable, all major limb elements scale with positive allometry. Second, while limb allometry coefficients do indicate differential allometry in limb elements, and thus should lead to some intralimb index allometry, this pattern appears to be attenuated by other sources of limb element length variation. Copyright © 2010 Wiley-Liss, Inc.

Rare earth, major and trace element composition of Leg 127 sediments

USGS Publications Warehouse

Murray, R.W.; Buchholtz ten Brink, Marilyn R.; Brumsack, Hans-Juergen; Gerlach, David C.; Russ III, G. Price

1992-01-01

The relative effects of paleoceanographic and paleogeographic variations, sediment lithology, and diagenetic processes on the final preserved chemistry of Japan Sea sediments are evaluated by investigating the rare earth element (REE), major element, and trace element concentrations in 59 squeeze-cake whole-round and 27 physical-property sample residues from Sites 794, 795, and 797, cored during ODP Leg 127. The most important variation in sedimentary chemical composition is the increase in SiO2 concentration through the Pliocene diatomaceous sequences, which dilutes most other major and trace element components by various degrees. This biogenic input is largest at Site 794 (Yamato Basin), moderately developed at Site 797 (Yamato Basin), and of only minor importance at Site 795 (Japan Basin), potentially reflecting basinal contrasts in productivity with the Yamato Basin recording greater biogenic input than the Japan Basin and with the easternmost sequence of Site 794 lying beneath the most productive waters. There are few systematic changes in solid-phase chemistry resulting from the opal-A/opal-CT or opal-CT/quartz silica phase transformations. Most major and trace element concentrations are controlled by the aluminosilicate fraction of the sediment, although the effects of diagenetic silica phases and manganese carbonates are of localized importance. REE total abundances (IREE) in the Japan Sea are strongly dependent upon the paleoceanographic position of a given site with respect to terrigenous and biogenic sources. REE concentrations at Site 794 overall correspond well to aluminosilicate chemical indices and are strongly diluted by SiO2 within the upper Miocene-Pliocene diatomaceous sequence. Eu/Eu* values at Site 794 reach a maximum through the diatomaceous interval as well, most likely suggesting an association of Eu/Eu* with the siliceous component, or reflecting slight incorporation of a detrital feldspar phase. XREE at Site 795 also is affiliated strongly with aluminosilicate phases and yet is diluted only slightly by siliceous input. At Site 797, ΣRE E is not as clearly associated with the aluminosilicate fraction, is correlated moderately to siliceous input, and may be sporadically influenced by detrital heavy minerals originating from the nearby rifted continental fragment composing the Yamato Rise. Ce/Ce* profiles at all three sites increase essentially monotonically with depth and record progressive diagenetic LREE fractionation. The observed Ce/Ce* increases are not responding to changes in the paleoceanographic oxygenation state of the overlying water, as there is no independent evidence to suggest the proper Oceanographic conditions. Ce/Ce* correlates slightly better with depth than with age at the two Yamato Basin sites. The downhole increase in Ce/Ce* at Sites 794 and 797 is a passive response to the diagenetic transfer of LREE (except Ce) from sediment to interstitial water. At Site 795, the overall lack of correlation between Ce/Ce* and La/Y^ suggests that other processes mask the diagenetic behavior of all LREEs. First-order calculations of the Ce budget in Japan Sea waters and sediment indicate that ~20% of the excess Ce adsorbed by settling particles is recycled within the water column and that an additional -38% is recycled at or near the seafloor. Thus, because the remaining excess Ce is only -10% of the total Ce, there is not a large source of Ce to the deeply buried sediment, further suggesting that the downhole increase in Ce/Ce* is a passive response to diagenetic behavior of the other LREEs. The REE chemistry of Japan Sea sediment therefore predicts successive downhole addition of LREEs to deeply buried interstitial waters.

Epigenetic reprogramming in plant sexual reproduction.

PubMed

Kawashima, Tomokazu; Berger, Frédéric

2014-09-01

Epigenetic reprogramming consists of global changes in DNA methylation and histone modifications. In mammals, epigenetic reprogramming is primarily associated with sexual reproduction and occurs during both gametogenesis and early embryonic development. Such reprogramming is crucial not only to maintain genomic integrity through silencing transposable elements but also to reset the silenced status of imprinted genes. In plants, observations of stable transgenerational inheritance of epialleles have argued against reprogramming. However, emerging evidence supports that epigenetic reprogramming indeed occurs during sexual reproduction in plants and that it has a major role in maintaining genome integrity and a potential contribution to epiallelic variation.

Mechanisms for Variation of Cellular P Stoichiometry: Diverse Cellular Phosphorus Allocation Strategies Across Microbial Groups from the Sargasso Sea

NASA Astrophysics Data System (ADS)

Popendorf, K.; Duhamel, S.

2016-02-01

Phosphorus is the least abundant of the three major macronutrients that define the canonical Redfield ratio, but its place in the backbone of nucleic acids and as an energy trafficking molecule lays a lower bound of cellular phosphorus content that is essential for all life. In addition to forming DNA, RNA, and adenosine triphosphate (ATP), significant amounts of cellular phosphorus may also be allocated to the production of phospholipids and polyphosphate. These latter two biochemicals in particular may occur in significant but highly variable amounts across different microbial groups, and the variation in cellular allocation to these biochemicals may be a contributing factor in defining the elemental stoichiometry of microbes. We investigated this variation in cellular phosphorus allocation across the most abundant microbial groups in the P-depleted Sargasso Sea: Prochlorococcus, Synechococcus, and heterotrophic bacteria. By coupling radioisotope tracing of phosphate and ATP with cell sorting flow cytometry and subsequent biochemical extractions, we made novel measurements of the P allocation to DNA, phospholipids, and polyphosphate in individual microbial groups from environmental populations. These results provide new insights into the cellular mechanisms of variation in stoichiometry and different microbial strategies for adaptation to low-P environments.

Along and Across Arc Variation of the Central Andes by Single Crystal Trace Element Analaysis

NASA Astrophysics Data System (ADS)

Michelfelder, G.; Sundell, T.; Wilder, A.; Salings, E. E.

2017-12-01

Along arc and across arc geochemical variations at continental volcanic arcs are influenced by a number of factors including the composition and thickness of the continental crust, mantle heterogeneity, and fluids from the subducted slab. Whole rock geochemical trends along and across the arc front of the Central Volcanic Zone (CVZ) have been suggested to be primarily influenced by the composition and thickness of the crust. In the CVZ, Pb isotopic domains relate volcanic rock compositions to the crustal basement and systematically varies with crustal age. It has been shown repeatedly that incompatible trace element trends and trace element ratios can be used to infer systematic geochemical changes. However, there is no rule linking magmatic process or chemical heterogeneity/ homogeneity as a result of large crustal magma storage reservoirs such as MASH zones to the observed variation. Here we present a combination of whole rock major- and trace element data, isotopic data and in situ single crystal data from plagioclase, pyroxene and olivine for six stratovolcanoes along the arc front and in the back arc of the CVZ. We compare geochemical trends at the whole and single crystal scale. These volcanoes include lava flows and domes from Cerro Uturuncu in the back-arc, Aucanquilcha, Ollagüe, San Pedro-San Pablo, Lascar, and Lazufre from the arc front. On an arc-wide scale, whole rock samples of silicic lavas from these six composite volcanoes display systematically higher K2O, LILE, REE and HFSE contents and 87Sr/86Sr ratios with increasing distance from the arc-front. In contrast, the lavas have systematically lower Na2O, Sr, and Ba contents; LILE/HFSE ratios; 143Nd/144Nd ratios; and more negative Eu anomalies. Silicic magmas along the arc-front reflecting melting of young, mafic composition source rocks with the continental crust becoming increasingly older and more felsic toward the east. These trends are paralleled in the trace element compositions of plagioclase cores which systematically become less diverse in composition in younger lava flows from each center. We suggest these trends result from progressively smaller degrees of mantle partial melting, primary melt generation, and crustal hybridization with distance from the arc-front and varying influence of MASH zone processes.

Across and along arc geochemical variations in altered volcanic rocks: Evidence from mineral chemistry of Jurassic lavas in northern Chile, and tectonic implications

NASA Astrophysics Data System (ADS)

Rossel, Pablo; Oliveros, Verónica; Ducea, Mihai N.; Hernandez, Laura

2015-12-01

Postmagmatic processes mask the original whole-rock chemistry of most Mesozoic igneous rocks from the Andean arc and back-arc units preserved in Chile. Mineral assemblages corresponding to subgreenschist metamorphic facies and/or propylitic hydrothermal alteration are ubiquitous in volcanic and plutonic rocks, suggesting element mobility at macroscopic and microscopic scale. However, fresh primary phenocrysts of clinopyroxene and plagioclase do occur in some of the altered rocks. We use major and trace element chemistry of such mineral phases to infer the geochemical variations of four Jurassic arc and four back-arc units from northern Chile. Clinopyroxene belonging to rocks of the main arc and two units of the bark-arc are augites with low contents of HFSE and REE; they originated from melting of an asthenospheric mantle source. Clinopyroxenes from a third back-arc unit show typical OIB affinities, with high Ti and trace element contents and low Si. Trace elemental variations in clinopyroxenes from these arc and back-arc units suggest that olivine and clinopyroxene were the main fractionating phases during early stages of magma evolution. The last back-arc unit shows a broad spectrum of clinopyroxene compositions that includes depleted arc-like augite, high Al and high Sr-Ca diopside (adakite-like signature). The origin of these lavas is the result of melting of a mixture of depleted mantle plus Sr-rich sediments and subsequent high pressure fractionation of garnet. Thermobarometric calculations suggest that the Jurassic arc and back-arc magmatism had at least one crustal stagnation level where crystallization and fractionation took place, located at ca. ~ 8-15 km. The depth of this stagnation level is consistent with lower-middle crust boundary in extensional settings. Crystallization conditions calculated for high Al diopsides suggest a deeper stagnation level that is not consistent with a thinned back-arc continental crust. Thus minor garnet fractionation occurred before these magmas reached the base of the crust. The presented data support the existence of a heterogeneous sub arc mantle and complex magmatic processes in the early stages of the Andean subduction.

Investigation of element distributions in Luna-16 regolith

NASA Astrophysics Data System (ADS)

Kuznetsov, R. A.; Lure, B. G.; Minevich, V. Ia.; Stiuf, V. I.; Pankratov, V. B.

1981-03-01

The concentrations of 32 elements in fractions of different grain sizes in the samples of the lunar regolith brought back by Luna-16 are determined by means of neutron activation analysis. Four groups of elements are distinguished on the basis of the variations of their concentration with grain size, and concentration variations of the various elements with sample depth are also noted. Chemical leaching of the samples combined with neutron activation also reveals differences in element concentrations in the water soluble, metallic, sulphide, phosphate, rare mineral and rock phases of the samples. In particular, the rare earth elements are observed to be depleted in the regolith with respect to chondritic values, and to be concentrated in the phase extracted with 14 M HNO3.

Electromagnetic finite elements based on a four-potential variational principle

NASA Technical Reports Server (NTRS)

Schuler, James J.; Felippa, Carlos A.

1991-01-01

Electromagnetic finite elements based on a variational principle that uses the electromagnetic four-potential as a primary variable are derived. This choice is used to construct elements suitable for downstream coupling with mechanical and thermal finite elements for the analysis of electromagnetic/mechanical systems that involve superconductors. The main advantages of the four-potential as a basis for finite element formulation are that the number of degrees of freedom per node remains modest as the problem dimensionally increases, that jump discontinuities on interfaces are naturally accommodated, and that statics as well as dynamics may be treated without any a priori approximations. The new elements are tested on an axisymmetric problem under steady state forcing conditions. The results are in excellent agreement with analytical solutions.

Igneous fractionation and subsolidus equilibration of diogenite meteorites

NASA Technical Reports Server (NTRS)

Mittlefehldt, David W.

1993-01-01

Diogenites are coarse-grained orthopyroxenite breccias of remarkably uniform major element composition. Most diogenites contain homogeneous pyroxene fragments up to 5 cm across of Wo2En74Fs24 composition. Common minor constituents are chromite, olivine, trolite and metal, while silica, plagioclase, merrillite and diopside are trace phases. Diogenites are generally believed to be cumulates from the eucrite parent body, although their relationship with eucrites remains obscure. It has been suggested that some diogenites are residues after partial melting. I have performed EMPA and INAA for major, minor and trace elements on most diogenites, concentrating on coarse-grained mineral and lithic clasts in order to elucidate their igneous formation and subsequent metamorphic history. Major element compositions of diogenites are decoupled from minor and trace element compositions; the latter record an igneous fractionation sequence that is not preserved in the former. Low equilibration temperatures indicate that major element diffusion continued long after crystallization. Diffusion coefficients for trivalent and tetravalent elements in pyroxene are lower than those of divalent elements. Therefore, major element compositions of diogenites may represent means of unknown portions of a cumulate homogenized by diffusion, while minor and trace elements still yield information on their igneous history. The scale of major element equilibration is unknown, but is likely to be on the order of a few cm. Therefore, the diogenite precursors may have consisted largely of cm-sized, igneously zoned orthopyroxene grains, which were subsequently annealed during slow cooling, obliterating major element zoning but preserving minor and trace incompatible element zoning.

Chemical evidence for differentiation, evaporation and recondensation from silicate clasts in Gujba

NASA Astrophysics Data System (ADS)

Oulton, Jonathan; Humayun, Munir; Fedkin, Alexei; Grossman, Lawrence

2016-03-01

The silicate and metal clasts in CB chondrites have been inferred to form as condensates from an impact-generated vapor plume between a metal-rich body and a silicate body. A detailed study of the condensation of impact-generated vapor plumes showed that the range of CB silicate clast compositions could not be successfully explained without invoking a chemically differentiated target. Here, we report the most comprehensive elemental study yet performed on CB silicates with 32 silicate clasts from nine slices of Gujba analyzed by laser ablation inductively coupled plasma mass spectrometry for 53 elements. Like in other studies of CBs, the silicate clasts are either barred olivine (BO) or cryptocrystalline (CC) in texture. In major elements, the Gujba silicate clasts ranged from chondritic to refractory enriched. Refractory element abundances ranged from 2 to 10 × CI, with notable anomalies in Ba, Ce, Eu, and U abundances. The two most refractory-enriched BO clasts exhibited negative Ce anomalies and were depleted in U relative to Th, characteristic of volatilization residues, while other BO clasts and the CC clasts exhibited positive Ce anomalies with excess U (1-3 × CI), and Ba (1-6 × CI) anomalies indicating re-condensation of ultra-refractory element depleted vapor. The Rare Earth Elements (REE) also exhibit light REE (LREE) enrichment or depletion in several clasts with a range of (La/Sm)CI of 0.9-1.8. This variation in the LREE is essentially impossible to accomplish by processes involving vapor-liquid or vapor-solid exchange of REE, and appears to have been inherited from a differentiated target. The most distinctive evidence for inherited chemical differentiation is observed in highly refractory element (Sc, Zr, Nb, Hf, Ta, Th) systematics. The Gujba clasts exhibit fractionations in Nb/Ta that correlate positively with Zr/Hf and span the range known from lunar and Martian basalts, and exceed the range in Zr/Hf variation known from eucrites. Variations of highly incompatible refractory elements (e.g., Th) against less incompatible elements (e.g., Zr, Sr, Sc) are not chondritic, but exhibit distinctly higher Th abundances requiring a differentiated crust to be admixed with depleted mantle in ratios that are biased to higher crust/mantle ratios than in a chondritic body. The possibility that these variations are due to admixture of refractory inclusion-debris into normal chondritic matter is raised but cannot be definitively tested because existing ;bulk; analyses of CAIs carry artifacts of unrepresentative sampling. The inferences drawn from the compositions of Gujba silicate clasts, here, complement what has been inferred from the compositions of metallic clasts, but provide surprisingly detailed insight into the structure of the target. Evidence that metal and silicate in CB chondrites both formed from impact-generated vapor plumes, taken together with recent work on metallic nodules in E chondrites, and on ordinary chondrites, indicates that chondrule formation occurs by this mechanism quite widely. However, the nature of the impact on the CB body is quite different than the popular conceptions of impact of partially or wholly molten chondritic bodies and the younger (5 Ma) age of CB chondrules is consistent with origin in a disk with more evolved targets and impactors gravitationally perturbed by nascent planets.

Bacterial Genome Instability

PubMed Central

Darmon, Elise

2014-01-01

SUMMARY Bacterial genomes are remarkably stable from one generation to the next but are plastic on an evolutionary time scale, substantially shaped by horizontal gene transfer, genome rearrangement, and the activities of mobile DNA elements. This implies the existence of a delicate balance between the maintenance of genome stability and the tolerance of genome instability. In this review, we describe the specialized genetic elements and the endogenous processes that contribute to genome instability. We then discuss the consequences of genome instability at the physiological level, where cells have harnessed instability to mediate phase and antigenic variation, and at the evolutionary level, where horizontal gene transfer has played an important role. Indeed, this ability to share DNA sequences has played a major part in the evolution of life on Earth. The evolutionary plasticity of bacterial genomes, coupled with the vast numbers of bacteria on the planet, substantially limits our ability to control disease. PMID:24600039

Translating infection control guidelines into practice: implementation process within a health care institution.

PubMed

Raveis, Victoria H; Conway, Laurie J; Uchida, Mayuko; Pogorzelska-Maziarz, Monika; Larson, Elaine L; Stone, Patricia W

2014-04-01

Health-care-associated infections (HAIs) remain a major patient safety problem even as policy and programmatic efforts designed to reduce HAIs have increased. Although information on implementing effective infection control (IC) efforts has steadily grown, knowledge gaps remain regarding the organizational elements that improve bedside practice and accommodate variations in clinical care settings. We conducted in-depth, semistructured interviews in 11 hospitals across the United States with a range of hospital personnel involved in IC (n = 116). We examined the collective nature of IC and the organizational elements that can enable disparate groups to work together to prevent HAIs. Our content analysis of participants' narratives yielded a rich description of the organizational process of implementing adherence to IC. Findings document the dynamic, fluid, interactional, and reactive nature of this process. Three themes emerged: implementing adherence efforts institution-wide, promoting an institutional culture to sustain adherence, and contending with opposition to the IC mandate.

Characterization of the chemical variation of feed coal and coal combustion products from a power plant utilizing low sulfur Powder River Basin coal

DOE Office of Scientific and Technical Information (OSTI.GOV)

Affolter, R.H.; Brownfield, M.E.; Cathcart, J.D.

2000-07-01

The US Geological Survey and the University of Kentucky Center for Applied Energy Research, in collaboration with an Indiana utility, are studying a coal-fired power plant burning Powder River Basin coal. This investigation involves a systematic study of the chemical and mineralogical characteristics of feed coal and coal combustion products (CCPs) from a 1,300-megawatt (MW) power unit. The main goal of this study is to characterize the temporal chemical variability of the feed coal, fly ash, and bottom ash by looking at the major-, minor-, and trace-element compositions and their associations with the feed coal mineralogy. Emphasis is also placedmore » on the abundance and modes of occurrence of elements of potential environmental concern that may affect the utilization of these CCPs and coals.« less

Eigenvalue equation and core-mode cutoff of weakly guiding tapered fiber as three layer optical waveguide and used as biochemical sensor.

PubMed

Linslal, C L; Mohan, P M S; Halder, A; Gangopadhyay, T K

2012-06-01

The core-mode cutoff plays a major role in evanescent field absorption based sensors. A method has been proposed to calculate the core-mode cutoff by solving the eigenvalue equations of a weakly guiding three layer optical waveguide graphically. The variation of normalized waveguide parameter (V) is also calculated with different wavelengths at core-mode cutoff. At the first step, theoretical analysis of tapered fiber parameters has been performed for core-mode cutoff. The taper angle of an adiabatic tapered fiber is also analyzed using the length-scale criterion. Secondly, single-mode tapered fiber has been developed to make a precision sensor element suitable for chemical detection. Finally, the sensor element has been used to detect absorption peak of ethylenediamine. Results are presented in which an absorption peak at 1540 nm is observed.

Trace elements in natural azurite pigments found in illuminated manuscript leaves investigated by synchrotron x-ray fluorescence and diffraction mapping

NASA Astrophysics Data System (ADS)

Smieska, Louisa M.; Mullett, Ruth; Ferri, Laurent; Woll, Arthur R.

2017-07-01

We present trace-element and composition analysis of azurite pigments in six illuminated manuscript leaves, dating from the thirteenth to sixteenth century, using synchrotron-based, large-area x-ray fluorescence (SR-XRF) and diffraction (SR-XRD) mapping. SR-XRF mapping reveals several trace elements correlated with azurite, including arsenic, zirconium, antimony, barium, and bismuth, that appear in multiple manuscripts but were not always detected by point XRF. Within some manuscript leaves, variations in the concentration of trace elements associated with azurite coincide with distinct regions of the illuminations, suggesting systematic differences in azurite preparation or purification. Variations of the trace element concentrations in azurite are greater among different manuscript leaves than the variations within each individual leaf, suggesting the possibility that such impurities reflect distinct mineralogical/geologic sources. SR-XRD maps collected simultaneously with the SR-XRF maps confirm the identification of azurite regions and are consistent with impurities found in natural mineral sources of azurite. In general, our results suggest the feasibility of using azurite trace element analysis for provenance studies of illuminated manuscript fragments, and demonstrate the value of XRF mapping in non-destructive determination of trace element concentrations within a single pigment.

An investigation of the stable isotopes, geochemistry and morphology of major streams in Dominica, Lesser Antilles: 2014 - 2017

NASA Astrophysics Data System (ADS)

Kopas, D. C.; Joseph, E. P.; Frey, H. M.

2017-12-01

The island of Dominica is a recently active (<200 ka) volcanic island located in the Lesser Antilles, with nine potentially active centers. Of the volcanic islands of the Lesser Antilles, it is the most rugged and has one the greatest stream densities (350 over 750 km2) and precipitation rates (up to 10,000 mm/yr in the mountainous interior). Sixty-seven meteoric streams across the island have been sampled annually over the last 4 years. Field measurements including pictures, pH and temperature, were recorded and water samples taken and analyzed for alkalinity, major elements (cations and anions), trace elements and stable isotopes (carbon, deuterium, and oxygen). Variations in water chemistry and river morphology were compared to various parameters, including precipitation, landslide locations, and lithology for each of the catchments. Within the study period, on August 27th, 2015, a significant tropical storm, Erika, made landfall in Dominica, depositing more than 500 mm of rainfall in 10 hours. There was little infiltration of the rainwater (over 50-60% run-off), which resulted in significant landslides, flash floods and damage to infrastructure and loss of life. Despite the obvious morphologic changes to the streams and high discharge during the storm event, preliminary analysis has shown little change in major stream geochemistry following the passage of Tropical Storm Erika. The 10-month time gap between the storm and the post-storm field sampling in June 2016 may be a factor of why geochemical changes were not observed. One of the most significant variations of stream composition during the study period was annual shifts in δD between -1.3 to -5.8 ‰ and δ18O between -1.98 to -2.61 ‰. A possible factor influencing the δ18O of surface waters is seasonal variation in rainfall. The dominant control on precipitation δ18O values is the amount effect, whereby rainfall amount and δ18O are inversely correlated. This relationship is a proxy for changes in δ18O values of surface waters. The data also suggest that hydrothermal fluids are not a prominent contributor to Dominican rivers, despite the presence of active volcanism and numerous hydrothermal systems on the island. The exceptions are the White River, which drains the Valley of Desolation and Boiling Lake and the Lamothe River, which drains the Cold Soufrierre.

Atmospheric wet and dry deposition of trace elements at ten sites in Northern China

NASA Astrophysics Data System (ADS)

Pan, Y. P.; Wang, Y. S.

2014-08-01

Atmospheric deposition is considered to be a major process that removes pollutants from the atmosphere and an important source of nutrients and contaminants for ecosystems. Trace elements (TEs), especially toxic metals deposited on plants and into soil and water, can cause substantial damage to the environment and human health due to their transfer and accumulation in food chains. Despite public concerns, quantitative knowledge of metal deposition from the atmosphere to ecosystems remains scarce. To advance our understanding of the spatio-temporal variations in the magnitudes, pathways, compositions and impacts of atmospherically deposited TEs, precipitation (rain and snow) and dry-deposited particles were collected simultaneously at ten sites in Northern China from December 2007 to November 2010. The measurements showed that the wet and dry depositions of TEs in the target areas were orders of magnitude higher than previous observations within and outside China, generating great concern over the potential risks. The spatial distribution of the total (wet plus dry) deposition flux was consistent with that of the dry deposition, with a significant decrease from industrial and urban areas to suburban, agricultural and rural sites. In contrast, the wet deposition exhibited less spatial variation. The seasonal variation of wet deposition was also different from that of dry deposition, although they were both governed by the precipitation and emission patterns. For the majority of TEs that exist as coarse particles, dry deposition dominated the total flux at each site. This was not the case for K, Ni, As, Pb, Zn, Cd, Se, Ag and Tl, for which the relative importance between wet and dry deposition fluxes varied by site. Whether wet deposition is the major atmospheric cleansing mechanism for the TEs depends on the size distribution and solubility of the particles. We found that atmospheric inputs of Cu, Pb, Zn, Cd, As and Se were of the same magnitude as their increases in the topsoil of agricultural systems. In addition, the total deposition flux of Pb observed at a forest site in this study was twice that of the critical load (7.0 mg m-2 yr-1) calculated for temperate forest ecosystems in Europe. These findings provide baseline data needed for future targeting policies to protect various ecosystems from long-term heavy metal input via atmospheric deposition.

Atmospheric wet and dry deposition of trace elements at 10 sites in Northern China

NASA Astrophysics Data System (ADS)

Pan, Y. P.; Wang, Y. S.

2015-01-01

Atmospheric deposition is considered to be a major process that removes pollutants from the atmosphere and an important source of nutrients and contaminants for ecosystems. Trace elements (TEs), especially toxic metals deposited on plants and into soil or water, can cause substantial damage to the environment and human health due to their transfer and accumulation in food chains. Despite public concerns, quantitative knowledge of metal deposition from the atmosphere to ecosystems remains scarce. To advance our understanding of the spatiotemporal variations in the magnitudes, pathways, compositions and impacts of atmospherically deposited TEs, precipitation (rain and snow) and dry-deposited particles were collected simultaneously at 10 sites in Northern China from December 2007 to November 2010. The measurements showed that the wet and dry depositions of TEs in the target areas were orders of magnitude higher than previous observations within and outside China, generating great concern over the potential risks. The spatial distribution of the total (wet plus dry) deposition flux was consistent with that of the dry deposition, with a significant decrease from industrial and urban areas to suburban, agricultural and rural sites, while the wet deposition exhibited less spatial variation. In addition, the seasonal variation of wet deposition was also different from that of dry deposition, although they were both governed by the precipitation and emission patterns. For the majority of TEs that exist as coarse particles, dry deposition dominated the total flux at each site. This was not the case for potassium, nickel, arsenic, lead, zinc, cadmium, selenium, silver and thallium, for which the relative importance between wet and dry deposition fluxes varied by site. Whether wet deposition is the major atmospheric cleansing mechanism for the TEs depends on the size distribution of the particles. We found that atmospheric inputs of copper, lead, zinc, cadmium, arsenic and selenium were of the same magnitude as their increases in the topsoil of agricultural systems. At a background forest site in Northern China, the total deposition flux of lead observed in this study (14.1 mg m-2 yr-1) was twice that of the critical load calculated for temperate forest ecosystems in Europe. These findings provide baseline data needed for future targeting policies to protect various ecosystems from long-term heavy metal input via atmospheric deposition.

Geochemistry and petrogenesis of the Laramie anorthosite complex, Wyoming

USGS Publications Warehouse

Fountain, J.C.; Hodge, D.S.; Allan, Hills F.

1981-01-01

A geochemical investigation of the Laramie anorthosite complex determined that monsonite associated with the complex are characterized by positive Eu anomalies and display a regular variation in composition with distance from the monzonite/county rock contact. Anorthositic rocks have major and trace element abundance typical of similar complexes. The internal variations in the monzonite were produced by in situ fractionation and contamination. The data indicate that anorthosite and monzonite cannot be comagmatic. It is proposed that the anorthosite and monzonite of the complex evolved from two distinct magmas, and that two stages of anatectic melting contributed to the evolution of the monzonite. An initial stage of partial melting was induced by intrusion of a gabbroic anorthosite magma into the lower crust; a second partial melting event occurred after emplacement where heat from the intrusions melted country rocks resulting in extensive contamination ofthe monzonite. ?? 1981.

An Improved Binary Differential Evolution Algorithm to Infer Tumor Phylogenetic Trees.

PubMed

Liang, Ying; Liao, Bo; Zhu, Wen

2017-01-01

Tumourigenesis is a mutation accumulation process, which is likely to start with a mutated founder cell. The evolutionary nature of tumor development makes phylogenetic models suitable for inferring tumor evolution through genetic variation data. Copy number variation (CNV) is the major genetic marker of the genome with more genes, disease loci, and functional elements involved. Fluorescence in situ hybridization (FISH) accurately measures multiple gene copy number of hundreds of single cells. We propose an improved binary differential evolution algorithm, BDEP, to infer tumor phylogenetic tree based on FISH platform. The topology analysis of tumor progression tree shows that the pathway of tumor subcell expansion varies greatly during different stages of tumor formation. And the classification experiment shows that tree-based features are better than data-based features in distinguishing tumor. The constructed phylogenetic trees have great performance in characterizing tumor development process, which outperforms other similar algorithms.

Early Triassic fluctuations of the global carbon cycle: New evidence from paired carbon isotopes in the western USA basin

NASA Astrophysics Data System (ADS)

Caravaca, Gwénaël; Thomazo, Christophe; Vennin, Emmanuelle; Olivier, Nicolas; Cocquerez, Théophile; Escarguel, Gilles; Fara, Emmanuel; Jenks, James F.; Bylund, Kevin G.; Stephen, Daniel A.; Brayard, Arnaud

2017-07-01

In the aftermath of the catastrophic end-Permian mass extinction, the Early Triassic records recurrent perturbations in the carbon isotope signal, most notably during the Smithian and through the Smithian/Spathian Boundary (SSB; 1.5 myr after the Permian/Triassic boundary), which show some of the largest excursions of the Phanerozoic. The late Smithian also corresponds to major biotic turnovers and environmental changes, such as temperature fluctuations, that deeply impacted the recovery after the end-Permian mass extinction. Here we document the paired carbon isotope signal along with an analysis of the trace and major elements at the long-known Hot Springs section (southeastern Idaho, USA). This section records Early Triassic sediments from the Griesbachian-Dienerian up to the lower Spathian. We show that the organic and carbonate δ13C variations mirror the signals identified at a global scale. Particularly, the middle Smithian-SSB event represented by a negative-positive isotopic couplet is well identified and is not of diagenetic origin. We also document a positive excursion potentially corresponding to the Dienerian/Smithian Boundary. Observed Smithian-Spathian excursions are recorded similarly in both the organic and carbonate reservoirs, but the organic matter signal systematically shows unexpectedly dampened variations compared to its carbonate counterpart. Additionally, we show that variations in the net isotopic effect (i.e., Δ13C) probably resulted from a complex set of forcing parameters including either a mixing between terrestrial and marine organic matter depending on the evolution of the depositional setting, or variations in the biological fractionation. We establish that the Δ13C signal cannot be directly related to CO2-driven temperature variations at Hot Springs. Even though the carbon isotope signal mirrors the Early Triassic variations known at the global scale, the Hot Springs signal probably also reflects local influences on the carbon isotopes that are neither diagenetic nor representative of the global exogenic carbon cycle.

Quantitative Relationships between Photosynthetic, Nitrogen Fixing, and Fermentative H2 Metabolism in a Photosynthetic Microbial Mat

NASA Technical Reports Server (NTRS)

Hoehler, Tori M.; Albert, Daniel B.; Bebout, Brad M.; Turk, Kendra A.; DesMarais, David J.

2004-01-01

The ultimate potential of any microbial ecosystem to contribute chemically to its environment - and therefore, to impact planetary biogeochemistry or to generate recognizable biosignatures - depends not only on the individual metabolic capabilities of constituent organisms, but also on how those capabilities are expressed through interactions with neighboring organisms. This is particularly important for microbial mats, which compress an extremely broad range of metabolic potential into a small and dynamic system. H2 participates in many of these metabolic processes, including the major elemental cycling processes of photosynthesis, nitrogen fixation, sulfate reduction, and fermentation, and may therefore serve as a mediator of microbial interactions within the mat system. Collectively, the requirements of energy, electron transfer, and biomass element stoichiometry suggest quantitative relationships among the major element cycling processes, as regards H2 metabolism We determined experimentally the major contributions to 32 cycling in hypersaline microbial mats from Baja California, Mexico, and compared them to predicted relationships. Fermentation under dark, anoxic conditions is quantitatively the most important mechanism of H2 production, consistent with expectations for non-heterocystous mats such as those under study. Up to 16% of reducing equivalents fixed by photosynthesis during the day may be released by this mechanism. The direct contribution of nitrogen fixation to H2 production is small in comparison, but this process may indirectly stimulate substantial H2 generation, by requiring higher rates of fermentation. Sulfate reduction, aerobic consumption, diffusive and ebulitive loss, and possibly H2-based photoreduction of CO2 serve as the principal H2 sinks. Collectively, these processes interact to create an orders-of-magnitude daily variation in H2 concentrations and fluxes, and thereby in the oxidation-reduction potential that is imposed on microbial processes occuring within the mat matrix.

Grain-size distribution and selected major and trace element concentrations in bed-sediment cores from the Lower Granite Reservoir and Snake and Clearwater Rivers, eastern Washington and northern Idaho, 2010

USGS Publications Warehouse

Braun, Christopher L.; Wilson, Jennifer T.; Van Metre, Peter C.; Weakland, Rhonda J.; Fosness, Ryan L.; Williams, Marshall L.

2012-01-01

Fifty subsamples from 15 cores were analyzed for major and trace elements. Concentrations of trace elements were low, with respect to sediment quality guidelines, in most cores. Typically, major and trace element concentrations were lower in the subsamples collected from the Snake River compared to those collected from the Clearwater River, the confluence of the Snake and Clearwater Rivers, and Lower Granite Reservoir. Generally, lower concentrations of major and trace elements were associated with coarser sediments (larger than 0.0625 millimeter) and higher concentrations of major and trace elements were associated with finer sediments (smaller than 0.0625 millimeter).

Chemical durability of alkali-borosilicate glasses studied by analytical SEM, IBA, isotopic-tracing and SIMS

NASA Astrophysics Data System (ADS)

Trocellier, P.; Djanarthany, S.; Chêne, J.; Haddi, A.; Brass, A. M.; Poissonnet, S.; Farges, F.

2005-10-01

Simple and complex alkali-borosilicate glasses were submitted to aqueous corrosion at room temperature, 60 and 90 °C in solutions with pH ranging between 0 and 12. Analytical scanning electron microscopy (SEM), ion beam analysis (IBA) techniques, isotopic tracing and secondary ion mass-depth profiling (SIMS) have been used to investigate the variations of the surface composition of glass. In acidic medium, the glass surface is generally covered by a thick hydrated silica layer, mobile elements like Li, Na and B and transition elements (Fe, Zr, Mo, etc.) are strongly depleted. Near pH 7, relative enrichments of aluminium, iron and rare earths are shown together with strong Li, Na and B depletions. In basic medium, the glass surface exhibits relative enrichments of the major part of transition metals (from Cr to U) whereas mobile elements seem to be kept close to their nominal concentration level at the glass surface and Si is severely impoverished. Hydrogen incorporated at the glass surface after leaching is much more immobile in neutral and basic media than in acid medium.

Vaporization and Zonal Mixing in Performance Modeling of Advanced LOX-Methane Rockets

NASA Technical Reports Server (NTRS)

Williams, George J., Jr.; Stiegemeier, Benjamin R.

2013-01-01

Initial modeling of LOX-Methane reaction control (RCE) 100 lbf thrusters and larger, 5500 lbf thrusters with the TDK/VIPER code has shown good agreement with sea-level and altitude test data. However, the vaporization and zonal mixing upstream of the compressible flow stage of the models leveraged empirical trends to match the sea-level data. This was necessary in part because the codes are designed primarily to handle the compressible part of the flow (i.e. contraction through expansion) and in part because there was limited data on the thrusters themselves on which to base a rigorous model. A more rigorous model has been developed which includes detailed vaporization trends based on element type and geometry, radial variations in mixture ratio within each of the "zones" associated with elements and not just between zones of different element types, and, to the extent possible, updated kinetic rates. The Spray Combustion Analysis Program (SCAP) was leveraged to support assumptions in the vaporization trends. Data of both thrusters is revisited and the model maintains a good predictive capability while addressing some of the major limitations of the previous version.

Decoding the role of regulatory element polymorphisms in complex disease.

PubMed

Vockley, Christopher M; Barrera, Alejandro; Reddy, Timothy E

2017-04-01

Genetic variation in gene regulatory elements contributes to diverse human diseases, ranging from rare and severe developmental defects to common and complex diseases such as obesity and diabetes. Early examples of regulatory mechanisms of human diseases involve large chromosomal rearrangements that change the regulatory connections within the genome. Single nucleotide variants in regulatory elements can also contribute to disease, potentially via demonstrated associations with changes in transcription factor binding, enhancer activity, post-translational histone modifications, long-range enhancer-promoter interactions, or RNA polymerase recruitment. Establishing causality between non-coding genetic variants, gene regulation, and disease has recently become more feasible with advances in genome-editing and epigenome-editing technologies. As establishing causal regulatory mechanisms of diseases becomes routine, functional annotation of target genes is likely to emerge as a major bottleneck for translation into patient benefits. In this review, we discuss the history and recent advances in understanding the regulatory mechanisms of human disease, and new challenges likely to be encountered once establishing those mechanisms becomes rote. Copyright © 2016 Elsevier Ltd. All rights reserved.

GREGOR: evaluating global enrichment of trait-associated variants in epigenomic features using a systematic, data-driven approach.

PubMed

Schmidt, Ellen M; Zhang, Ji; Zhou, Wei; Chen, Jin; Mohlke, Karen L; Chen, Y Eugene; Willer, Cristen J

2015-08-15

The majority of variation identified by genome wide association studies falls in non-coding genomic regions and is hypothesized to impact regulatory elements that modulate gene expression. Here we present a statistically rigorous software tool GREGOR (Genomic Regulatory Elements and Gwas Overlap algoRithm) for evaluating enrichment of any set of genetic variants with any set of regulatory features. Using variants from five phenotypes, we describe a data-driven approach to determine the tissue and cell types most relevant to a trait of interest and to identify the subset of regulatory features likely impacted by these variants. Last, we experimentally evaluate six predicted functional variants at six lipid-associated loci and demonstrate significant evidence for allele-specific impact on expression levels. GREGOR systematically evaluates enrichment of genetic variation with the vast collection of regulatory data available to explore novel biological mechanisms of disease and guide us toward the functional variant at trait-associated loci. GREGOR, including source code, documentation, examples, and executables, is available at http://genome.sph.umich.edu/wiki/GREGOR. cristen@umich.edu Supplementary data are available at Bioinformatics online. © The Author 2015. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

Dynamic melting in plume heads: the formation of Gorgona komatiites and basalts

NASA Astrophysics Data System (ADS)

Arndt, Nicholas T.; Kerr, Andrew C.; Tarney, John

1997-01-01

The small Pacific island of Gorgona, off the coast of Colombia, is well known for its spectacular spinifex-textured komatiites. These high-Mg liquids, which have been linked to a late Cretaceous deep mantle plume, are part of a volcanic series with a wide range of trace-element compositions, from moderately enriched basalts ( La/SmN ˜ 1.5) to extremely depleted ultramafic tuffs and picrites ( La/SmN ˜ 0.2). Neither fractional crystallization, nor partial melting of a homogeneous mantle source, can account for this large variation: the source must have been chemically heterogeneous. Low 143Nd/144Nd in the more enriched basalts indicates some initial source heterogeneity but most of the variation in magma compositions is believed to result from dynamic melting during the ascent of a plume. Modelling of major- and trace-element compositions suggests that ultramafic magmas formed at ˜ 60-100 km depth, and that the melt extraction that gave rise to their depleted sources started at still greater depths. The ultra-depleted lavas represent magmas derived directly from the hottest, most depleted parts of the plume; the more abundant moderately depleted basalts are interpreted as the products of pooling of liquids from throughout the melting region.

Chemical composition of modern and fossil Hippopotamid teeth and implications for paleoenvironmental reconstructions and enamel formation: 1. major and minor element variation

NASA Astrophysics Data System (ADS)

Brügmann, G.; Krause, J.; Brachert, T. C.; Kullmer, O.; Schrenk, F.; Ssemmanda, I.; Mertz, D. F.

2011-05-01

Bioapatite in mammalian teeth is readily preserved in continental sediments and represents a very important archive for reconstructions of environment and climate evolution. This project intends to provide a detailed data base of major, minor and trace element and isotope tracers for tooth apatite using a variety of microanalytical techniques. The aim is to identify specific sedimentary environments and to improve our understanding on the interaction between internal metabolic processes during tooth formation and external nutritional control and secondary alteration effects. Here, we use the electron microprobe, to determine the major and minor element contents of fossil and modern molar enamel, cement and dentin from hippopotamids. Most of the studied specimens are from different ecosystems in Eastern Africa, representing modern and fossil lakustrine (Lake Kikorongo, Lake Albert, and Lake Malawi) and modern fluvial environments of the Nile River system. Secondary alteration effects in particular FeO, MnO, SO3 and F concentrations, which are 2 to 10 times higher in fossil than in modern enamel; secondary enrichments in fossil dentin and cement are even higher. In modern and fossil enamel, along sections perpendicular to the enamel-dentin junction (EDJ) or along cervix-apex profiles, P2O5 and CaO contents and the CaO/P2O5 ratios are very constant (StdDev ~1 %). Linear regression analysis reveals very tight control of the MgO (R2∼0.6), Na2O and Cl variation (for both R2>0.84) along EDJ-outer enamel rim profiles, despite large concentration variations (40 % to 300 %) across the enamel. These minor elements show well defined distribution patterns in enamel, similar in all specimens regardless of their age and origin, as the concentration of MgO and Na2O decrease from the enamel-dentin junction (EDJ) towards the outer rim, whereas Cl displays the opposite variation. Fossil enamel from hippopotamids which lived in the saline Lake Kikorongo have a much higher MgO/Na2O ratio (∼1.11) than those from the Neogene fossils of Lake Albert (MgO/Na2O∼0.4), which was a large fresh water lake like those in the western Branch of the East African Rift System today. Similarly, the MgO/Na2O ratio in modern enamel from the White Nile River (∼0.36), which has a Precambrian catchment of dominantly granite and gneisses and passes through several saline zones, is higher than that from the Blue Nile River, whose catchment is the Neogene volcanic Ethiopian Highland (MgO/Na2O∼0.22). Thus, particularly MgO/Na2O might be a sensitive fingerprint for environments where river and lake water have suffered strong evaporation. Enamel formation in mammals takes place at successive mineralization fronts within a confined chamber where ion and molecule transport is controlled by the surrounding enamel organ. During the secretion and maturation phases the epithelium generates different fluid composition, which in principle, should determine the final composition of enamel apatite. This is supported by co-linear relationships between MgO, Cl and Na2O which can be interpreted as binary mixing lines. However, if maturation starts after secretion is completed the observed element distribution can only be explained by recrystallization of existing and addition of new apatite during maturation. Perhaps the initial enamel crystallites precipitating during secretion and the newly formed bioapatite crystals during maturation equilibrate with a continuously evolving fluid. During crystallization of bioapatite the enamel fluid becomes continuously depleted in MgO and Na2O, but enriched in Cl which results in the formation of MgO, and Na2O-rich, but Cl-poor bioapatite near the EDJ and MgO- and Na2O-poor, but Cl-rich bioapatite at the outer enamel rim. The linkage between lake and river water composition, bioavailability of elements for plants, animal nutrition and tooth formation is complex and multifaceted. The quality and limits of the MgO/Na2O and other proxies have to be established with systematic investigations relating chemical distribution patterns to sedimentary environment and to growth structures developing as secretion and maturation proceed during tooth formation.

Magmatic apatite - a window into melt evolution of the Dalgety pluton.

NASA Astrophysics Data System (ADS)

Pope, M. D.; Tailby, N.; Webster, J. D.

2017-12-01

The Dalgety Pluton is located in the Lachlan Fold Belt in southeastern Australia, and is a coarse grained, peraluminous, S-type, biotite granodiorite. Historically, pluton emplacement has been thought of as cooling from a single, large body of magma over a geologically quick period. Current studies suggest issues with this model and propose a slower, incremental model of emplacement in some settings (Glazner et al., 2004). This work proposes that the emplacement of the Dalgety Pluton occurred in incremental phases demonstrated through halogen, minor, and trace element concentrations in apatites. Apatites from 13 samples collected along a north-south transect of the pluton were analyzed using a 5-spectrometer Cameca SX-100 calibrated for seventeen elements (F, Na, Cl, P, Mg, Al, Si, Ca, S, K, Ti, Mn, Fe, Sr, Ba, La, and Ce) at the American Museum of Natural History. The majority of apatites are fluorapatites, having >50 % F, <15 % Cl, and <25 % OH (calculated from Ketchum et al., 2015). However, the concentrations of the halogens vary throughout the pluton with the highest Cl concentrations near the southern edge. Two of the minor elements, Mn and Fe, also show distinct variation with the lowest concentrations being 0.35 wt% in Mn and 0.25 wt% in Fe and the highest being 1.10 wt% and 0.95 wt%, respectively. Trace elements Ce and La vary as well with their highest concentrations being 0.29 wt% and 0.11 wt% and their lowest for both being below the detection limit of the electron probe. Elemental variation across the pluton is seen in the concentration of minor elements and halogens with a sharp increases at 10,000 meters and again at 21,000 meters from the southern rim of the pluton. Similar shifts in concentration are also seen in the trace elements, however the concentrations decrease at these distances. These wholesale elemental fluctuations in composition are indicative of a dramatic shift in melt composition supporting the hypothesis of multiple melt injection in the Dalgety Pluton. Reference: Glazner, A.F., Bartley, J.M., Coleman, D.S., Gray, W. and Taylor, R.Z., 2004. Are plutons assembled over millions of years by amalgamation from small magma chambers?. GSA today, 14(4/5), pp.4-12.

Midsagittal brain variation and MRI shape analysis of the precuneus in adult individuals.

PubMed

Bruner, Emiliano; Rangel de Lázaro, Gizéh; de la Cuétara, José Manuel; Martín-Loeches, Manuel; Colom, Roberto; Jacobs, Heidi I L

2014-04-01

Recent analyses indicate that the precuneus is one of the main centres of integration in terms of functional and structural processes within the human brain. This neuroanatomical element is formed by different subregions, involved in visuo-spatial integration, memory and self-awareness. We analysed the midsagittal brain shape in a sample of adult humans (n = 90) to evidence the patterns of variability and geometrical organization of this area. Interestingly, the major brain covariance pattern within adult humans is strictly associated with the relative proportions of the precuneus. Its morphology displays a marked individual variation, both in terms of geometry (mostly in its longitudinal dimensions) and anatomy (patterns of convolution). No patent differences are evident between males and females, and the allometric effect of size is minimal. However, in terms of morphology, the precuneus does not represent an individual module, being influenced by different neighbouring structures. Taking into consideration the apparent involvement of the precuneus in higher-order human brain functions and evolution, its wide variation further stresses the important role of these deep parietal areas in modern neuroanatomical organization. © 2014 Anatomical Society.

Techniques of orbital decay and long-term ephemeris prediction for satellites in earth orbit

NASA Technical Reports Server (NTRS)

Barry, B. F.; Pimm, R. S.; Rowe, C. K.

1971-01-01

In the special perturbation method, Cowell and variation-of-parameters formulations of the motion equations are implemented and numerically integrated. Variations in the orbital elements due to drag are computed using the 1970 Jacchia atmospheric density model, which includes the effects of semiannual variations, diurnal bulge, solar activity, and geomagnetic activity. In the general perturbation method, two-variable asymptotic series and automated manipulation capabilities are used to obtain analytical solutions to the variation-of-parameters equations. Solutions are obtained considering the effect of oblateness only and the combined effects of oblateness and drag. These solutions are then numerically evaluated by means of a FORTRAN program in which an updating scheme is used to maintain accurate epoch values of the elements. The atmospheric density function is approximated by a Fourier series in true anomaly, and the 1970 Jacchia model is used to periodically update the Fourier coefficients. The accuracy of both methods is demonstrated by comparing computed orbital elements to actual elements over time spans of up to 8 days for the special perturbation method and up to 356 days for the general perturbation method.

A preliminary investigation of finite-element modeling for composite rotor blades

NASA Technical Reports Server (NTRS)

Lake, Renee C.; Nixon, Mark W.

1988-01-01

The results from an initial phase of an in-house study aimed at improving the dynamic and aerodynamic characteristics of composite rotor blades through the use of elastic couplings are presented. Large degree of freedom shell finite element models of an extension twist coupled composite tube were developed and analyzed using MSC/NASTRAN. An analysis employing a simplified beam finite element representation of the specimen with the equivalent engineering stiffness was additionally performed. Results from the shell finite element normal modes and frequency analysis were compared to those obtained experimentally, showing an agreement within 13 percent. There was appreciable degradation in the frequency prediction for the torsional mode, which is elastically coupled. This was due to the absence of off-diagonal coupling terms in the formulation of the equivalent engineering stiffness. Parametric studies of frequency variation due to small changes in ply orientation angle and ply thickness were also performed. Results showed linear frequency variations less than 2 percent per 1 degree variation in the ply orientation angle, and 1 percent per 0.0001 inch variation in the ply thickness.

Multiproxy Study of a Holocene Record From Western Pescadero Basin, Gulf of California, Mexico: Paleoclimatic inferences

NASA Astrophysics Data System (ADS)

Perez-Cruz, L. L.; Valdez, M.; Roy, P. D.

2013-12-01

A sedimentary sequence (gravity core T-56, 256 cm length) from Pescadero Basin on the western side of the Gulf of California is analyzed as part of a multiproxy study. The core was collected within the Oxygen Minimum Zone (OMZ) at 597 m depth, aboard of the R/V "El Puma". Pescadero basin is located at mouth of the gulf; in a location sensitive to record the changes in the gulf and the Eastern Pacific Ocean. The sedimentary sequence is analyzed to contribute to understanding the climatic variability in the southern part of the gulf of California during the Holocene using geochemistry (major and trace elements and Corg), magnetic properties and benthic foraminifera assemblages as proxy of changes in paleoproductivity, paleoprecipitation and bottom water oxygenation. The core is characterized by silty-clay sediments, and exhibits a turbidite between 130 and 235 cm, distinguished by sandy sediments and reworking material. From 130 cm to the top it shows a visible laminated structure. Chronology is based on six AMS radiocarbon dates, and estimated sedimentation rates are 0.22, 0.18, 0.17 and 0.05 mm/yr. The core covers c. last 10,500 years. Variations in major and trace elements (Ti, K, Al, K, Zr) and magnetic susceptibility indicate fluctuations in terrigenous input related to changes in hydrological conditions, Benthic foraminifera assemblages and Corg along the sequence indicate that Pescadero basin is sensitive to paleoceanographic changes. Corg and benthic foraminiferal assemblages show downcore variations related to paleoproductivity changes. For the Early Holocene, low values of Corg and epifaunal benthic foraminifera suggest oxic conditions in bottom waters and strong stratification with low productivity. Organic carbon shows higher values towards the bottom of the core, for the last 1300 years.

Whole-genome analysis of mRNA decay in Plasmodium falciparum reveals a global lengthening of mRNA half-life during the intra-erythrocytic development cycle.

PubMed

Shock, Jennifer L; Fischer, Kael F; DeRisi, Joseph L

2007-01-01

The rate of mRNA decay is an essential element of post-transcriptional regulation in all organisms. Previously, studies in several organisms found that the specific half-life of each mRNA is precisely related to its physiologic role, and plays an important role in determining levels of gene expression. We used a genome-wide approach to characterize mRNA decay in Plasmodium falciparum. We found that, globally, rates of mRNA decay increase dramatically during the asexual intra-erythrocytic developmental cycle. During the ring stage of the cycle, the average mRNA half-life was 9.5 min, but this was extended to an average of 65 min during the late schizont stage of development. Thus, a major determinant of mRNA decay rate appears to be linked to the stage of intra-erythrocytic development. Furthermore, we found specific variations in decay patterns superimposed upon the dominant trend of progressive half-life lengthening. These variations in decay pattern were frequently enriched for genes with specific cellular functions or processes. Elucidation of Plasmodium mRNA decay rates provides a key element for deciphering mechanisms of genetic control in this parasite, by complementing and extending previous mRNA abundance studies. Our results indicate that progressive stage-dependent decreases in mRNA decay rate function are a major determinant of mRNA accumulation during the schizont stage of intra-erythrocytic development. This type of genome-wide change in mRNA decay rate has not been observed in any other organism to date, and indicates that post-transcriptional regulation may be the dominant mechanism of gene regulation in P. falciparum.

Temporal constraints on magma generation and differentiation in a continental volcano: Buckland, eastern Australia

NASA Astrophysics Data System (ADS)

Crossingham, Tracey J.; Ubide, Teresa; Vasconcelos, Paulo M.; Knesel, Kurt M.; Mallmann, Guilherme

2018-03-01

The eastern margin of the Australian continent hosts a large number of Cenozoic intraplate volcanoes along a 2000 km long track. Here, we study mafic lavas from the Buckland volcano, Queensland, located in the northern (older) segment of this track, to assess magma generation and differentiation through time. The rocks are aphanitic to microporphyritic basalts, trachy-basalts and basanites. Incompatible element geochemistry together with Sr-Nd-Pb isotope ratios indicate that magmas formed from an enriched mantle I (EMI)-like garnet-bearing source with variable degrees of crustal contamination. Whole rock elemental variations suggest fractionation of olivine, plagioclase, clinopyroxene and/or magnetite. There is no petrographic or geochemical evidence of magma mixing in the studied rocks (e.g., lack of recycled minerals), suggesting a relatively quick ascent from the source to the surface without major storage at shallow levels. 40Ar/39Ar geochronology reveals two stages of volcanism: 30.3 ± 0.1 Ma and 27.4 ± 0.2 Ma. The Old Buckland (30.3 ± 0.1 Ma) melts have negative K anomalies, and incompatible element ratios suggest the occurrence of residual hydrous minerals in a metasomatised mantle source. We therefore infer that at the onset of volcanism, deep-mantle-derived magmas interacted with metasomatised sub-continental lithospheric mantle (SCLM). Major and trace element data, clinopyroxene thermobarometry and thermodynamic modelling indicate magma evolution by assimilation and fractional crystallisation (AFC) during ascent through the crust. Following a hiatus in volcanic activity of 2.5 Ma, eruption of Young Buckland (27.4 ± 0.2 Ma) lavas marked a shift towards more alkaline compositions. Trace element compositions indicate lower degrees of partial melting and a lack of interaction with metasomatic components. Young Buckland lavas become progressively more SiO2-saturated up stratigraphy, suggesting an increase in the degree of partial melting with time. Young Buckland lavas also have more radiogenic 87Sr/86Sr and 207Pb/204Pb ratios and less radiogenic 143Nd/144Nd ratios up stratigraphy. These isotopic variations, together with coupled increases in Pb and K and decreases in Ce/Pb (27.22 to 11.09) and Nb/U (68.30 to 29.96), suggest that crustal contamination also increased with time. By placing absolute age and stratigraphic constraints on the Buckland lavas, we have been able to ascertain differentiation signatures imposed on mantle-derived melts during ascent through the continental lithosphere over 3 Ma. Our study provides new constraints on magma generation and differentiation in continental intraplate volcanic systems.

Chapter 13 Petrogenesis of the Campanian Ignimbrite: implications for crystal-melt separation and open-system processes from major and trace elements and Th isotopic data

USGS Publications Warehouse

Bohrson, W.A.; Spera, F.J.; Fowler, S.J.; Belkin, H.E.; de Vivo, B.; Rolandi, G.

2006-01-01

The Campanian Ignimbrite is a large-volume trachytic to phonolitic ignimbrite that was deposited at ???39.3 ka and represents one of a number of highly explosive volcanic events that have occurred in the region near Naples, Italy. Thermodynamic modeling using the MELTS algorithm reveals that major element variations are dominated by crystal-liquid separation at 0.15 GPa. Initial dissolved H2O content in the parental melt is ???3 wt.% and the magmatic system fugacity of oxygen was buffered along QFM+1. Significantly, MELTS results also indicate that the liquid line of descent is marked by a large change in the proportion of melt (from 0.46 to 0.09) at ???884??C, which leads to a discontinuity in melt composition (i.e., a compositional gap) and different thermodynamic and transport properties of melt and magma across the gap. Crystallization of alkali feldspar and plagioclase dominates the phase assemblage at this pseudo-invariant point temperature of ???884??C. Evaluation of the variations in the trace elements Zr, Nb, Th, U, Rb, Sm, and Sr using a mass balance equation that accounts for changing bulk mineral-melt partition coefficients as crystallization occurs indicates that crystal-liquid separation and open-system processes were important. Th isotope data yield an apparent isochron that is ???20 kyr younger than the age of the deposit, and age-corrected Th isotope data indicate that the magma body was an open system at the time of eruption. Because open-system behavior can profoundly change isotopic and elemental characteristics of a magma body, these Th results illustrate that it is critical to understand the contribution that open-system processes make to magmatic systems prior to assigning relevance to age or timescale information derived from such systems. Fluid-magma interaction has been proposed as a mechanism to change isotopic and elemental characteristics of magma bodies, but an evaluation of the mass and thermal constraints on such a process suggests large-scale interaction is unlikely. In the case of the magma body associated with the Campanian Ignimbrite, the most likely source of the open-system signatures is assimilation of partial melts of compositionally heterogeneous basement composed of cumulates and intrusive equivalents of volcanic activity that has characterized the Campanian region for over 300 kyr. ?? 2006 Elsevier B.V. All rights reserved.

Differential Nutrient Limitation of Soil Microbial Biomass and Metabolic Quotients (qCO2): Is There a Biological Stoichiometry of Soil Microbes?

PubMed Central

Hartman, Wyatt H.; Richardson, Curtis J.

2013-01-01

Background Variation in microbial metabolism poses one of the greatest current uncertainties in models of global carbon cycling, and is particularly poorly understood in soils. Biological Stoichiometry theory describes biochemical mechanisms linking metabolic rates with variation in the elemental composition of cells and organisms, and has been widely observed in animals, plants, and plankton. However, this theory has not been widely tested in microbes, which are considered to have fixed ratios of major elements in soils. Methodology/Principal Findings To determine whether Biological Stoichiometry underlies patterns of soil microbial metabolism, we compiled published data on microbial biomass carbon (C), nitrogen (N), and phosphorus (P) pools in soils spanning the global range of climate, vegetation, and land use types. We compared element ratios in microbial biomass pools to the metabolic quotient qCO2 (respiration per unit biomass), where soil C mineralization was simultaneously measured in controlled incubations. Although microbial C, N, and P stoichiometry appeared to follow somewhat constrained allometric relationships at the global scale, we found significant variation in the C∶N∶P ratios of soil microbes across land use and habitat types, and size-dependent scaling of microbial C∶N and C∶P (but not N∶P) ratios. Microbial stoichiometry and metabolic quotients were also weakly correlated as suggested by Biological Stoichiometry theory. Importantly, we found that while soil microbial biomass appeared constrained by soil N availability, microbial metabolic rates (qCO2) were most strongly associated with inorganic P availability. Conclusions/Significance Our findings appear consistent with the model of cellular metabolism described by Biological Stoichiometry theory, where biomass is limited by N needed to build proteins, but rates of protein synthesis are limited by the high P demands of ribosomes. Incorporation of these physiological processes may improve models of carbon cycling and understanding of the effects of nutrient availability on soil C turnover across terrestrial and wetland habitats. PMID:23526933

Capacitively readout multi-element sensor array with common-mode cancellation

DOEpatents

Britton, Jr., Charles L.; Warmack, Robert J.; Bryan, William L.; Jones, Robert L.; Oden, Patrick Ian; Thundat, Thomas

2001-01-01

An improved multi-element apparatus for detecting the presence of at least one chemical, biological or physical component in a monitored area comprising an array or single set of the following elements: a capacitive transducer having at least one cantilever spring element secured thereto, the cantilever element having an area thereof coated with a chemical having an affinity for the component to be detected; a pick-up plate positioned adjacent to the cantilever element at a distance such that a capacitance between the cantilever element and the pick-up plate changes as the distance between the cantilever element and the pick-up plate varies, the change in capacitance being a measurable variation; a detection means for measuring the measurable variation in the capacitance between the cantilever element and the pick-up plate that forms a measurement channel signal; and at least one feedback cantilever spring element positioned apart from the coated cantilever element, the cantilever element substantially unaffected by the component being monitored and providing a reference channel signal to the detection means that achieves a common mode cancellation between the measurement channel signal and reference channel signal.

Active noise control using noise source having adaptive resonant frequency tuning through stiffness variation

NASA Technical Reports Server (NTRS)

Rajiyah, Harindra (Inventor); Hedeen, Robert A. (Inventor); Pla, Frederic G. (Inventor); Renshaw, Anthony A. (Inventor)

1995-01-01

A noise source for an aircraft engine active noise cancellation system in which the resonant frequency of a noise radiating element is tuned to permit noise cancellation over a wide range of frequencies. The resonant frequency of the noise radiating element is tuned by a plurality of force transmitting mechanisms which contact the noise radiating element. Each one of the force transmitting mechanisms includes an expandable element and a spring in contact with the noise radiating element so that excitation of the element varies the spring force applied to the noise radiating element. The elements are actuated by a controller which receives input of a signal proportional to displacement of the noise radiating element and a signal corresponding to the blade passage frequency of the engine's fan. In response, the controller determines a control signal which is sent to the elements and causes the spring force applied to the noise radiating element to be varied. The force transmitting mechanisms can be arranged to either produce bending or linear stiffness variations in the noise radiating element.

Mineral composition of Atriplex hymenelytra growing in the northern Mojave Desert

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wallace, A.; Romney, E.M.; Hunter, R.B.

1980-01-01

Fifty samples of Atriplex hymenelytra (Torr.) S. Wats. were collected from several different locations in southern Nevada and California to test variability in mineral composition. Only Na, V, P, Ca, Mg, Mn, and Sr in the samples appeared to represent a uniform population resulting in normal curves for frequency distribution. Even so, about 40 percent of the variance for these elements was due to location. All elements differed enough with location so that no element really represented a uniform population. The coefficient of variation for most elements was over 40 percent and one was over 100 percent. The proportion ofmore » variance due to analytical variation averaged 16.2 +- 13.1 percent (standard deviation), that due to location was 43.0 +- 13.4 percent, and that due to variation of plants within location was 40.7 +- 13.0 percent.« less

Diel mercury-concentration variations in streams affected by mining and geothermal discharge

USGS Publications Warehouse

Nimick, D.A.; McCleskey, R. Blaine; Gammons, C.H.; Cleasby, T.E.; Parker, S.R.

2007-01-01

Diel variations of concentrations of unfiltered and filtered total Hg and filtered methyl Hg were documented during 24-h sampling episodes in water from Silver Creek, which drains a historical gold-mining district near Helena, Montana, and the Madison River, which drains the geothermal system of Yellowstone National Park. The concentrations of filtered methyl Hg had relatively large diel variations (increases of 68 and 93% from morning minima) in both streams. Unfiltered and filtered (0.1-??m filtration) total Hg in Silver Creek had diel concentration increases of 24% and 7%, respectively. In the Madison River, concentrations of unfiltered and filtered total Hg did not change during the sampling period. The concentration variation of unfiltered total Hg in Silver Creek followed the diel variation in suspended-particle concentration. The concentration variation of filtered total and methyl Hg followed the solar photocycle, with highest concentrations during the early afternoon and evening and lowest concentrations during the morning. None of the diel Hg variations correlated with diel variation in streamflow or major ion concentrations. The diel variation in filtered total Hg could have been produced by adsorption-desorption of Hg2+ or by reduction of Hg(II) to Hg0 and subsequent evasion of Hg0. The diel variation in filtered methyl Hg could have been produced by sunlight- and temperature-dependent methylation. This study is the first to examine diel Hg cycling in streams, and its results reinforce previous conclusions that diel trace-element cycling in streams is widespread but often not recognized and that parts of the biogeochemical Hg cycle respond quickly to the daily photocycle. ?? 2006 Elsevier B.V. All rights reserved.

Temporal variability in estuarine fish otolith elemental fingerprints: Implications for connectivity assessments

NASA Astrophysics Data System (ADS)

Reis-Santos, Patrick; Gillanders, Bronwyn M.; Tanner, Susanne E.; Vasconcelos, Rita P.; Elsdon, Travis S.; Cabral, Henrique N.

2012-10-01

The chemical composition of fish otoliths can provide valuable information for determining the nursery value of estuaries to adult populations of coastal fishes. However, understanding temporal variation in elemental fingerprints at different scales is important as it can potentially confound spatial discrimination among estuaries. Otolith elemental ratios (Li:Ca, Mg:Ca, Mn:Ca, Cu:Ca, Sr:Ca, Ba:Ca and Pb:Ca) of Platichthys flesus and Dicentrarchus labrax, from several estuaries along the Portuguese coast in two years and three seasons (spring, summer and autumn) within a year, were determined via Laser Ablation Inductively Coupled Plasma Mass Spectrometry. Elemental fingerprints varied significantly among years and seasons within a year but we achieved accurate classifications of juvenile fish to estuarine nursery of origin (77-96% overall cross-validated accuracy). Although elemental fingerprints were year-specific, variation among seasons did not hinder spatial discrimination. Estuarine fingerprints of pooled seasonal data were representative of the entire juvenile year class and attained high discrimination (77% and 80% overall cross-validated accuracy for flounder and sea bass, respectively). Incorporating seasonal variation resulted in up to an 11% increase in correct classification of individual estuaries, in comparison to seasons where accuracies were lowest. Overall, understanding the implications of temporal variations in otolith chemistry for spatial discrimination is key to establish baseline data for connectivity studies.

Genetic and epigenetic variation in the lineage specification of regulatory T cells

PubMed Central

Arvey, Aaron; van der Veeken, Joris; Plitas, George; Rich, Stephen S; Concannon, Patrick; Rudensky, Alexander Y

2015-01-01

Regulatory T (Treg) cells, which suppress autoimmunity and other inflammatory states, are characterized by a distinct set of genetic elements controlling their gene expression. However, the extent of genetic and associated epigenetic variation in the Treg cell lineage and its possible relation to disease states in humans remain unknown. We explored evolutionary conservation of regulatory elements and natural human inter-individual epigenetic variation in Treg cells to identify the core transcriptional control program of lineage specification. Analysis of single nucleotide polymorphisms in core lineage-specific enhancers revealed disease associations, which were further corroborated by high-resolution genotyping to fine map causal polymorphisms in lineage-specific enhancers. Our findings suggest that a small set of regulatory elements specify the Treg lineage and that genetic variation in Treg cell-specific enhancers may alter Treg cell function contributing to polygenic disease. DOI: http://dx.doi.org/10.7554/eLife.07571.001 PMID:26510014

Interrogating the variation of element masses and distribution patterns in single cells using ICP-MS with a high efficiency cell introduction system.

PubMed

Wang, Hailong; Wang, Meng; Wang, Bing; Zheng, Lingna; Chen, Hanqing; Chai, Zhifang; Feng, Weiyue

2017-02-01

Cellular heterogeneity is an inherent condition of cell populations, which results from stochastic expression of genes, proteins, and metabolites. The heterogeneity of individual cells can dramatically influence cellular decision-making and cell fate. So far, our knowledge about how the variation of endogenous metals and non-metals in individual eukaryotic cells is limited. In this study, ICP-MS equipped with a high efficiency cell introduction system (HECIS) was developed as a method of single-cell ICP-MS (SC-ICP-MS). The method was applied to the single-cell analysis of Mn, Fe, Co, Cu, Zn, P, and S in human cancer cell lines (HeLa and A549) and normal human bronchial epithelial cell line (16HBE). The analysis showed obvious variation of the masses of Cu, Fe, Zn, and P in individual HeLa cells, and variation of Fe, Zn, and P in individual A549 cells. On the basis of the single-cell data, a multimodal distribution of the elements in the cell population was fitted, which showed marked differences among the various cell lines. Importantly, subpopulations of the elements were found in the cell populations, especially in the HeLa cancer cells. This study demonstrates that SC-ICP-MS is able to unravel the extent of variation of endogenous elements in individual cells, which will help to improve our fundamental understanding of cellular biology and reveal novel insights into human biology and medicine. Graphical abstract The variations of masses and distribution patterns of elements Mn, Fe, Co, Cu, Zn, P, and S in single cells were successfully detected by ICP-MS coupled with a high efficiency cell introduction system (HECIS).

[Content of mineral elements of Gastrodia elata by principal components analysis].

PubMed

Li, Jin-ling; Zhao, Zhi; Liu, Hong-chang; Luo, Chun-li; Huang, Ming-jin; Luo, Fu-lai; Wang, Hua-lei

2015-03-01

To study the content of mineral elements and the principal components in Gastrodia elata. Mineral elements were determined by ICP and the data was analyzed by SPSS. K element has the highest content-and the average content was 15.31 g x kg(-1). The average content of N element was 8.99 g x kg(-1), followed by K element. The coefficient of variation of K and N was small, but the Mn was the biggest with 51.39%. The highly significant positive correlation was found among N, P and K . Three principal components were selected by principal components analysis to evaluate the quality of G. elata. P, B, N, K, Cu, Mn, Fe and Mg were the characteristic elements of G. elata. The content of K and N elements was higher and relatively stable. The variation of Mn content was biggest. The quality of G. elata in Guizhou and Yunnan was better from the perspective of mineral elements.

Natural Selection and Functional Potentials of Human Noncoding Elements Revealed by Analysis of Next Generation Sequencing Data

PubMed Central

Xu, Shuhua

2015-01-01

Noncoding DNA sequences (NCS) have attracted much attention recently due to their functional potentials. Here we attempted to reveal the functional roles of noncoding sequences from the point of view of natural selection that typically indicates the functional potentials of certain genomic elements. We analyzed nearly 37 million single nucleotide polymorphisms (SNPs) of Phase I data of the 1000 Genomes Project. We estimated a series of key parameters of population genetics and molecular evolution to characterize sequence variations of the noncoding genome within and between populations, and identified the natural selection footprints in NCS in worldwide human populations. Our results showed that purifying selection is prevalent and there is substantial constraint of variations in NCS, while positive selectionis more likely to be specific to some particular genomic regions and regional populations. Intriguingly, we observed larger fraction of non-conserved NCS variants with lower derived allele frequency in the genome, indicating possible functional gain of non-conserved NCS. Notably, NCS elements are enriched for potentially functional markers such as eQTLs, TF motif, and DNase I footprints in the genome. More interestingly, some NCS variants associated with diseases such as Alzheimer's disease, Type 1 diabetes, and immune-related bowel disorder (IBD) showed signatures of positive selection, although the majority of NCS variants, reported as risk alleles by genome-wide association studies, showed signatures of negative selection. Our analyses provided compelling evidence of natural selection forces on noncoding sequences in the human genome and advanced our understanding of their functional potentials that play important roles in disease etiology and human evolution. PMID:26053627

Evidence for chemically heterogeneous Arctic mantle beneath the Gakkel Ridge

NASA Astrophysics Data System (ADS)

D'Errico, Megan E.; Warren, Jessica M.; Godard, Marguerite

2016-02-01

Ultraslow spreading at mid-ocean ridges limits melting due to on-axis conductive cooling, leading to the prediction that peridotites from these ridges are relatively fertile. To test this, we examined abyssal peridotites from the Gakkel Ridge, the slowest spreading ridge in the global ocean ridge system. Major and trace element concentrations in pyroxene and olivine minerals are reported for 14 dredged abyssal peridotite samples from the Sparsely Magmatic (SMZ) and Eastern Volcanic (EVZ) Zones. We observe large compositional variations among peridotites from the same dredge and among dredges in close proximity to each other. Modeling of lherzolite trace element compositions indicates varying degrees of non-modal fractional mantle melting, whereas most harzburgite samples require open-system melting involving interaction with a percolating melt. All peridotite chemistry suggests significant melting that would generate a thick crust, which is inconsistent with geophysical observations at Gakkel Ridge. The refractory harzburgites and thin overlying oceanic crust are best explained by low present-day melting of a previously melted heterogeneous mantle. Observed peridotite compositional variations and evidence for melt infiltration demonstrates that fertile mantle components are present and co-existing with infertile mantle components. Melt generated in the Gakkel mantle becomes trapped on short length-scales, which produces selective enrichments in very incompatible rare earth elements. Melt migration and extraction may be significantly controlled by the thick lithosphere induced by cooling at such slow spreading rates. We propose the heterogeneous mantle that exists beneath Gakkel Ridge is the consequence of ancient melting, combined with subsequent melt percolation and entrapment.

The geochemistry and petrogenesis of an ophiolitic sequence from Pindos, Greece

NASA Astrophysics Data System (ADS)

Capedri, S.; Venturelli, G.; Bocchi, G.; Dostal, J.; Garuti, G.; Rossi, A.

1980-06-01

The ophiolites of Northern Pindos have been studied in a section close to the village of Perivoli (Grevena District). The section comprises cumulus rocks ranging from ultramafics to gabbros, overlain by dolerites (non-cumulus microgabbro) capped by thick frequently pillowed lava flows. The sequence is cut by basaltic dykes. While the cumulus rocks and the dolerites are mostly fresh, the lavas and dykes are strongly transformed. Major and trace element (Ni, Cr, Sc, Y, Zr, Nb, Sr, Ba, Zn, Cu, V, Li) data are presented for selected samples from the sequence. For some elements, the volcanic/subvolcanic rocks (flows, dykes, dolerites) exhibit wide chemical characteristics which are considered to mainly reflect variations within the parent magmas. Some lavas appear to be closely comparable with the present-day ocean-floor basalts, while other flows and most of the dykes are strongly depleted in some “incompatible” elements and are similar to some rocks from immature island arcs. The dolerites have transitional chemical features. The Pindos lavas differ from Western Mediterranean ophiolites in that the former have lower Ti,P,Zr,Y, higher Fe tot. and normally higher Ti/Zr ratio. The volcanic/subvolcanic rocks from Pindos have been derived from separate magmas. Some lavas were possibly produced by variable partial melting of an already depleted mantle source, while the lavas exhibiting ocean-floor affinity were probably generated by partial melting of a less depleted source. The wide chemical variations of the Pindos lavas cannot be easily explained by an ocean-ridge system. An “island arc-marginal basin system” could better account for the observed chemical features.

Methods and theory in bone modeling drift: comparing spatial analyses of primary bone distributions in the human humerus.

PubMed

Maggiano, Corey M; Maggiano, Isabel S; Tiesler, Vera G; Chi-Keb, Julio R; Stout, Sam D

2016-01-01

This study compares two novel methods quantifying bone shaft tissue distributions, and relates observations on human humeral growth patterns for applications in anthropological and anatomical research. Microstructural variation in compact bone occurs due to developmental and mechanically adaptive circumstances that are 'recorded' by forming bone and are important for interpretations of growth, health, physical activity, adaptation, and identity in the past and present. Those interpretations hinge on a detailed understanding of the modeling process by which bones achieve their diametric shape, diaphyseal curvature, and general position relative to other elements. Bone modeling is a complex aspect of growth, potentially causing the shaft to drift transversely through formation and resorption on opposing cortices. Unfortunately, the specifics of modeling drift are largely unknown for most skeletal elements. Moreover, bone modeling has seen little quantitative methodological development compared with secondary bone processes, such as intracortical remodeling. The techniques proposed here, starburst point-count and 45° cross-polarization hand-drawn histomorphometry, permit the statistical and populational analysis of human primary tissue distributions and provide similar results despite being suitable for different applications. This analysis of a pooled archaeological and modern skeletal sample confirms the importance of extreme asymmetry in bone modeling as a major determinant of microstructural variation in diaphyses. Specifically, humeral drift is posteromedial in the human humerus, accompanied by a significant rotational trend. In general, results encourage the usage of endocortical primary bone distributions as an indicator and summary of bone modeling drift, enabling quantitative analysis by direction and proportion in other elements and populations. © 2015 Anatomical Society.

Rapid Increase in Genome Size as a Consequence of Transposable Element Hyperactivity in Wood-White (Leptidea) Butterflies

PubMed Central

Talla, Venkat; Suh, Alexander; Kalsoom, Faheema; Dincă, Vlad; Vila, Roger; Friberg, Magne; Wiklund, Christer

2017-01-01

Abstract Characterizing and quantifying genome size variation among organisms and understanding if genome size evolves as a consequence of adaptive or stochastic processes have been long-standing goals in evolutionary biology. Here, we investigate genome size variation and association with transposable elements (TEs) across lepidopteran lineages using a novel genome assembly of the common wood-white (Leptidea sinapis) and population re-sequencing data from both L. sinapis and the closely related L. reali and L. juvernica together with 12 previously available lepidopteran genome assemblies. A phylogenetic analysis confirms established relationships among species, but identifies previously unknown intraspecific structure within Leptidea lineages. The genome assembly of L. sinapis is one of the largest of any lepidopteran taxon so far (643 Mb) and genome size is correlated with abundance of TEs, both in Lepidoptera in general and within Leptidea where L. juvernica from Kazakhstan has considerably larger genome size than any other Leptidea population. Specific TE subclasses have been active in different Lepidoptera lineages with a pronounced expansion of predominantly LINEs, DNA elements, and unclassified TEs in the Leptidea lineage after the split from other Pieridae. The rate of genome expansion in Leptidea in general has been in the range of four Mb/Million year (My), with an increase in a particular L. juvernica population to 72 Mb/My. The considerable differences in accumulation rates of specific TE classes in different lineages indicate that TE activity plays a major role in genome size evolution in butterflies and moths. PMID:28981642

Traffic-related trace elements in soils along six highway segments on the Tibetan Plateau: Influence factors and spatial variation.

PubMed

Wang, Guanxing; Zeng, Chen; Zhang, Fan; Zhang, Yili; Scott, Christopher A; Yan, Xuedong

2017-03-01

The accumulation of traffic-related trace elements in soil as the result of anthropogenic activities raises serious concerns about environmental pollution and public health. Traffic is the main source of trace elements in roadside soil on the Tibetan Plateau, an area otherwise devoid of industrial emissions. Indeed, the rapid development of tourism and transportation in this region means it is becoming increasingly important to identify the accumulation levels, influence distance, spatial distribution, and other relevant factors influencing trace elements. In this study, 229 soil samples along six segments of the major transportation routes on the Tibetan Plateau (highways G214, S308, and G109), were collected for analysis of eight trace elements (Cr, Co, Ni, As, Cu, Zn, Cd, and Pb). The results of statistical analyses showed that of the eight trace elements in soils, Cu, Zn, Cd, and Pb were primarily derived from traffic. The relationship between the trace element accumulation levels and the distance from the roadside followed an exponential decline, with the exception of Segment 3, the only unpaved gravel road studied. In addition, the distance of influence from the roadside varied by trace element and segment, ranging from 16m to 144m. Background values for each segment were different because of soil heterogeneity, while a number of other potential influencing factors (including traffic volume, road surface material, roadside distance, land cover, terrain, and altitude) all had significant effects on trace-element concentrations. Overall, however, concentrations along most of the road segments investigated were at, or below, levels defined as low on the Nemero Synthesis index. Copyright © 2017 Elsevier B.V. All rights reserved.

Phylogenetic Conflict in Bears Identified by Automated Discovery of Transposable Element Insertions in Low-Coverage Genomes

PubMed Central

Gallus, Susanne; Janke, Axel

2017-01-01

Abstract Phylogenetic reconstruction from transposable elements (TEs) offers an additional perspective to study evolutionary processes. However, detecting phylogenetically informative TE insertions requires tedious experimental work, limiting the power of phylogenetic inference. Here, we analyzed the genomes of seven bear species using high-throughput sequencing data to detect thousands of TE insertions. The newly developed pipeline for TE detection called TeddyPi (TE detection and discovery for Phylogenetic Inference) identified 150,513 high-quality TE insertions in the genomes of ursine and tremarctine bears. By integrating different TE insertion callers and using a stringent filtering approach, the TeddyPi pipeline produced highly reliable TE insertion calls, which were confirmed by extensive in vitro validation experiments. Analysis of single nucleotide substitutions in the flanking regions of the TEs shows that these substitutions correlate with the phylogenetic signal from the TE insertions. Our phylogenomic analyses show that TEs are a major driver of genomic variation in bears and enabled phylogenetic reconstruction of a well-resolved species tree, despite strong signals for incomplete lineage sorting and introgression. The analyses show that the Asiatic black, sun, and sloth bear form a monophyletic clade, in which phylogenetic incongruence originates from incomplete lineage sorting. TeddyPi is open source and can be adapted to various TE and structural variation callers. The pipeline makes it possible to confidently extract thousands of TE insertions even from low-coverage genomes (∼10×) of nonmodel organisms. This opens new possibilities for biologists to study phylogenies and evolutionary processes as well as rates and patterns of (retro-)transposition and structural variation. PMID:28985298

Sequence Analysis and Characterization of Active Human Alu Subfamilies Based on the 1000 Genomes Pilot Project.

PubMed

Konkel, Miriam K; Walker, Jerilyn A; Hotard, Ashley B; Ranck, Megan C; Fontenot, Catherine C; Storer, Jessica; Stewart, Chip; Marth, Gabor T; Batzer, Mark A

2015-08-29

The goal of the 1000 Genomes Consortium is to characterize human genome structural variation (SV), including forms of copy number variations such as deletions, duplications, and insertions. Mobile element insertions, particularly Alu elements, are major contributors to genomic SV among humans. During the pilot phase of the project we experimentally validated 645 (611 intergenic and 34 exon targeted) polymorphic "young" Alu insertion events, absent from the human reference genome. Here, we report high resolution sequencing of 343 (322 unique) recent Alu insertion events, along with their respective target site duplications, precise genomic breakpoint coordinates, subfamily assignment, percent divergence, and estimated A-rich tail lengths. All the sequenced Alu loci were derived from the AluY lineage with no evidence of retrotransposition activity involving older Alu families (e.g., AluJ and AluS). AluYa5 is currently the most active Alu subfamily in the human lineage, followed by AluYb8, and many others including three newly identified subfamilies we have termed AluYb7a3, AluYb8b1, and AluYa4a1. This report provides the structural details of 322 unique Alu variants from individual human genomes collectively adding about 100 kb of genomic variation. Many Alu subfamilies are currently active in human populations, including a surprising level of AluY retrotransposition. Human Alu subfamilies exhibit continuous evolution with potential drivers sprouting new Alu lineages. © The Author(s) 2015. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

Elemental composition of human teeth with emphasis on trace constituents: a review

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sachs, W H

Literature covered by the current review is based on a search of Chemical Abstracts, 1917 through 1975. Early studies, pre-dating 1940, are referenced primarily for historical interest. Emphasis is on the micro-constituents of human teeth, those present at concentrations less than a few tenths of a percent by weight. Within this category of data, we have been primarily concerned with the radiochemically stable nuclides. The important relationship between caries and trace elements is covered only insofar as carious teeth exhibit properties with respect to trace element composition that differ from normal teeth. Having made these disclaimers, we note that anmore » attempt has been made to cover the literature exhaustively; although some important results have undoubtedly been overlooked. It is our hope, however, that sufficient material has been included in this review to facilitate further recovery of data by interested individuals. In Chapter 1, analytical techniques that have been employed in this field are briefly presented; discussion centers on problems associated with preparation of specimens for analysis. Chapter 2 is devoted to topical coverage of data on the inorganic composition of teeth. An element-by-element tabulation of concentration data is provided, our statistical analysis of selected data explained, and evidence concerning several major factors thought to influence dental composition evaluated. These include provenance, age, sex, distribution, and tooth type/intermouth variation.« less

A Teaching Exercise to Introduce Stable Isotope Fractionation of Metals into Geochemistry Courses

ERIC Educational Resources Information Center

Weiss, Dominik J.; Harris, Caroline; Maher, Kate; Bullen, Thomas

2013-01-01

Variations in the isotopic composition of elements have been widely used to study earth's climate, biosphere, and interior, and more recently to track the fate of contaminants. Within the broad range of elements that exhibit measureable isotopic variations, metal stable isotopes are increasingly applied across the biological, geological,…

On numerically accurate finite element

NASA Technical Reports Server (NTRS)

Nagtegaal, J. C.; Parks, D. M.; Rice, J. R.

1974-01-01

A general criterion for testing a mesh with topologically similar repeat units is given, and the analysis shows that only a few conventional element types and arrangements are, or can be made suitable for computations in the fully plastic range. Further, a new variational principle, which can easily and simply be incorporated into an existing finite element program, is presented. This allows accurate computations to be made even for element designs that would not normally be suitable. Numerical results are given for three plane strain problems, namely pure bending of a beam, a thick-walled tube under pressure, and a deep double edge cracked tensile specimen. The effects of various element designs and of the new variational procedure are illustrated. Elastic-plastic computation at finite strain are discussed.

The optimization of self-phased arrays for diurnal motion tracking of synchronous satellites

NASA Technical Reports Server (NTRS)

Theobold, D. M.; Hodge, D. B.

1977-01-01

The diurnal motion of a synchronous satellite necessitates mechanical tracking when a large aperture, high gain antenna is employed at the earth terminal. An alternative solution to this tracking problem is to use a self phased array consisting of a number of fixed pointed elements, each with moderate directivity. Non-mechanical tracking and adequate directive gain are achieved electronically by phase coherent summing of the element outputs. The element beamwidths provide overlapping area coverage of the satellite motion but introduce a diurnal variation into the array gain. The optimum element beamwidth and pointing direction of these elements can be obtained under the condition that the array gain is maximized simultaneously with the minimization of the diurnal variation.

Ostracod Geochemistry as a Proxy for Paleoenvironmental Change

NASA Astrophysics Data System (ADS)

Carrier, A.; Herrmann, A. D.

2016-02-01

Recent studies in the field of paleoceanography suggest that the geochemistry of ostracods, through their uptake of elements from their environment, has the potential to act as proxies for paleoenvironmental change. For example, pH-sensitive elements such as Boron and Uranium potentially record changes in the environment's pH, while temperature sensitive elements Magnesium and Strontium record temperature changes. If this is the case, a random sample of ostracods taken from the same environment should have very little variation in their elemental concentration. This hypothesis was tested using a group of ostracods of the genus Cyprideis taken from a horizon in a hypersaline lake in the southwest of Big Darby Island, Bahamas. Laser-ablation inductively coupled plasma mass spectrometer (LA-ICP-MS) was used in order to measure the elemental concentrations from each ostracod carapace. Despite differences in size and species, the ostracods showed very little variations in Boron and Uranium concentrations. However, Magnesium and Strontium showed more elemental variation in each ostracod. This data suggests that ostracod carapaces do have the potential to act as proxies for environmental pH change; however, their potential to record temperature changes is inconclusive based on these results.

Trace element abundances of high-MgO glasses from Kilauea, Mauna Loa and Haleakala volcanoes, Hawaii

USGS Publications Warehouse

Wagner, T.P.; Clague, D.A.; Hauri, E.H.; Grove, T.L.

1998-01-01

We performed an ion-microprobe study of eleven high-MgO (6.7-14.8 wt%) tholeiite glasses from the Hawaiian volcanoes Kilauea, Mauna Loa and Haleakala. We determined the rare earth (RE), high field strength, and other selected trace element abundances of these glasses, and used the data to establish their relationship to typical Hawaiian shield tholeiite and to infer characteristics of their source. The glasses have trace element abundance characteristics generally similar to those of typical shield tholeiites, e.g. L(light)REE/H(heavy)REE(C1) > 1. The Kilauea and Mauna Loa glasses, however, display trace and major element characteristics that cross geochemical discriminants observed between Kilauea and Mauna Loa shield lavas. The glasses contain a blend of these discriminating chemical characteristics, and are not exactly like the typical shield lavas from either volcano. The production of these hybrid magmas likely requires a complexly zoned source, rather than two unique sources. When corrected for olivine fractionation, the glass data show correlations between CaO concentration and incompatible trace element abundances, indicating that CaO may behave incompatibly during melting of the tholeiite source. Furthermore, the tholeiite source must contain residual garnet and clinopyroxene to account for the variation in trace element abundances of the Kilauea glasses. Inversion modeling indicates that the Kilauea source is flat relative to C1 chondrites, and has a higher bulk distribution coefficient for the HREE than the LREE.

Controls on foliar nutrient and aluminium concentrations in a tropical tree flora: phylogeny, soil chemistry and interactions among elements.

PubMed

Metali, Faizah; Abu Salim, Kamariah; Tennakoon, Kushan; Burslem, David F R P

2015-01-01

Foliar elemental concentrations are predictors of life-history variation and contribute to spatial patterns in biogeochemical cycling. We examined the contributions of habitat association, local soil environment, and elemental interactions to variation in foliar elemental concentrations in tropical trees using methods that account for phylogeny. We sampled top-soils and leaves of 58 tropical trees in heath forest (HF) on nutrient-poor sand and mixed dipterocarp forest (MDF) on nutrient-rich clay soils. A phylogenetic generalized least squares method was used to determine how foliar nutrient and aluminium (Al) concentrations varied in response to habitat distribution, soil chemistry and other elemental concentrations. Foliar nitrogen (N) and Al concentrations were greater for specialists of MDF than for specialists of HF, while foliar calcium (Ca) concentrations showed the opposite trend. Foliar magnesium (Mg) concentrations were lower for generalists than for MDF specialists. Foliar element concentrations were correlated with fine-scale variation in soil chemistry in phylogenetically controlled analyses across species, but there was limited within-species plasticity in foliar elemental concentrations. Among Al accumulators, foliar Al concentration was positively associated with foliar Ca and Mg concentrations, and negatively associated with foliar phosphorus (P) concentrations. The Al-accumulation trait and relationships between foliar elemental and Al concentrations may contribute to species habitat partitioning and ecosystem-level differences in biogeochemical cycles. © 2014 The Authors. New Phytologist © 2014 New Phytologist Trust.

Primitive Melt Inclusions from Multiple Samples from the FAMOUS Zone: Insights into the Mantle Melting Column and the Fractionation Processes

NASA Astrophysics Data System (ADS)

Laubier, M.; Langmuir, C. H.

2008-12-01

On mid-ocean ridges, the influential work by Sobolev and Shimizu (Nature, 1993) and Sobolev (Petrology, 1996) has inferred fractional melting during polybaric upwelling by showing that olivine-hosted inclusions were formed over a range of pressures. However melt inclusion studies have often concerned single MORB samples and may be seen as anecdotal in the sense that they are neither repeated nor globally verified. Recent modeling and experimental results also suggest the importance of post-entrapment processes for major and trace elements. This study presents major and trace element data in 300 olivine-hosted melt inclusions from 11 samples from the FAMOUS segment on the Mid-Atlantic Ridge. Published data from Shimizu (Phys. Earth Planet. Int., 1998) and Kamenetsky (EPSL, 1996; spinel-hosted inclusions) are also reported. In parallel, major and trace element measurements were performed in 150 glasses of the segment in order to have consistent datasets. Melt inclusions, trapped in olivine phenocrysts Mg#85-92, display complex trends in major element plots and can be divided into three groups. Group 1, the largest, is characterized by high MgO (9.4-13.4 wt.%), intermediate SiO2 and Al2O3 contents. Group 2 displays distinctively high Al2O3 (up to 18.4 wt.%), low SiO2 (as low as 46.5 wt.%) and high MgO (10.5-12.8 wt.%) contents, along with low CaO and variable TiO2, K2O and incompatible element concentrations. Group 3 consists of the melt inclusions trapped in less primitive olivines (Mg#<88.5) and displays higher SiO2, CaO and trace element contents. In the lava population, two groups can be distinguished. A small subset, that shares many features with the group 2 melt inclusions, displays high MgO and Al2O3 and low SiO2 and incompatible element contents. This type of lava - high-Al, low-Si and high-Mg - has been previously reported for various mid-ocean ridges (e.g., le Roux et al., Contrib. Min. Petrol., 2002; Eason and Sinton, EPSL, 2008). The second group plots along liquid lines of descent at low pressure starting from the compositions of the group 1 melt inclusions. Modeling of continuous polybaric melting and crystallization shows that the different inclusion groups are derived from melts formed at various pressures in the melting column (~12-6 kbar). After segregation from the mantle, the three batches of melts are fractionated at distinct pressures. The group 2 melt inclusions are consistent with the highest pressure of melt formation and a major role of cpx+olivine fractionation at high pressure (8 kbar), whereas group 3 results indicate the lowest pressure of extraction and entrapment (1kbar). An important observation is that high-Al, low-Si lavas contain melt inclusions from both the low-Si, high-Al group 2 and normal compositions (groups 1 and 3). These lavas can be reproduced by mixing between these two populations of inclusions, followed by some extent of differentiation. Therefore, this study shows that lavas represent averages of melts differentiated from the melt inclusions, and that the major element variability among inclusions can be explained by the combined effects of polybaric melting and crystallization at variable pressure. Trace element compositions of group 1 and 2 melt inclusions show large variations; incompatible element ratios (Ba/La, Rb/Nb, etc) suggest local source heterogeneity. Further modeling will be carried out in order to distinguish between the effects of partial melting and source composition.

Polymorphism and methylation patterns in Agave tequilana Weber var. 'Azul' plants propagated asexually by three different methods.

PubMed

Díaz-Martínez, Miriam; Nava-Cedillo, Alejandro; Guzmán-López, José Alfredo; Escobar-Guzmán, Rocío; Simpson, June

2012-04-01

Genetic variation in three forms of asexually propagated Agave tequilana Weber var. 'Azul' plants namely offsets, bulbils and in vitro cultured individuals was studied by AFLP analysis. Low levels of variation were observed between mother plants and offsets and a higher level between mother plant and bulbils. Families obtained from commercial plantations showed lower levels of variation in comparison to families grown as ornamentals. No variation was observed between the original explant and four generations of in vitro cultured plants. Epigenetic variation was also studied by analyzing changes in methylation patterns between mother plants and offspring in each form of asexual reproduction. Offsets and bulbils showed an overall decrease in methylation whereas in vitro cultured plants showed patterns specific to each generation: Generations 1 and 4 showed overall demethylation whereas Generations 2 and 3 showed increased methylation. Analysis of ESTs associated with transposable elements revealed higher proportions of ESTs from Ty1-copia-like, Gypsy and CACTA transposable elements in cDNA libraries obtained from pluripotent tissue suggesting a possible correlation between methylation patterns, expression of transposable element associated genes and somaclonal variation. Copyright © 2012 Elsevier Ireland Ltd. All rights reserved.

Midsagittal Brain Variation among Non-Human Primates: Insights into Evolutionary Expansion of the Human Precuneus.

PubMed

Pereira-Pedro, Ana Sofia; Rilling, James K; Chen, Xu; Preuss, Todd M; Bruner, Emiliano

2017-01-01

The precuneus is a major element of the superior parietal lobule, positioned on the medial side of the hemisphere and reaching the dorsal surface of the brain. It is a crucial functional region for visuospatial integration, visual imagery, and body coordination. Previously, we argued that the precuneus expanded in recent human evolution, based on a combination of paleontological, comparative, and intraspecific evidence from fossil and modern human endocasts as well as from human and chimpanzee brains. The longitudinal proportions of this region are a major source of anatomical variation among adult humans and, being much larger in Homo sapiens, is the main characteristic differentiating human midsagittal brain morphology from that of our closest living primate relative, the chimpanzee. In the current shape analysis, we examine precuneus variation in non-human primates through landmark-based models, to evaluate the general pattern of variability in non-human primates, and to test whether precuneus proportions are influenced by allometric effects of brain size. Results show that precuneus proportions do not covary with brain size, and that the main difference between monkeys and apes involves a vertical expansion of the frontal and occipital regions in apes. Such differences might reflect differences in brain proportions or differences in cranial architecture. In this sample, precuneus variation is apparently not influenced by phylogenetic or allometric factors, but does vary consistently within species, at least in chimpanzees and macaques. This result further supports the hypothesis that precuneus expansion in modern humans is not merely a consequence of increasing brain size or of allometric scaling, but rather represents a species-specific morphological change in our lineage. © 2017 S. Karger AG, Basel.

New isotopic clues to solar system formation

NASA Technical Reports Server (NTRS)

Lee, T.

1979-01-01

The presence of two new extinct nuclides Al-26 and Pd-107 with half lives of approximately one million years in the early solar system implies that there were nucleosynthetic activities involving a great many elements almost at the instant of solar system formation. Rate gas and oxygen isotopic abundance variations ('anomalies') relative to the 'cosmic' composition were observed in a variety of planetary objects, which indicates that isotopic heterogeneities caused by the incomplete mixing of distinct nucleosynthesis components permeate the entire solar system. These new results have major implications for cosmochronology, nucleosynthesis theory, star formation, planetary heating, and the genetic relationship between different planetary bodies

Aspects of the history of 66095 based on trace elements in clasts and whole rock

NASA Technical Reports Server (NTRS)

Jovanovic, S.; Reed, G. W., Jr.

1982-01-01

Halogens, P, U and Na are reported in anorthositic and basaltic clasts and matrix from rusty rock 66095. Large fractions of Cl and Br associated with the separated phases from 66095 are soluble in H2O. Up to two orders of magnitude variation in concentrations of these elements in the breccia components and varying H2O-soluble Cl/Br ratios indicate different sources of volatiles. An approximately constant ratio of the H2O- to 0.1 M HNO3-soluble Br in the various components suggests no appreciable alteration in the original distributions of this element in the breccia forming processes. Up to 50% or more of the phosphorus and of the non-H2O-soluble Cl was dissolved from most of the breccia components by 0.1 M HNO3. Clast and matrix residues from the leaching steps contain, in most cases, the Cl/P2O5 ratio found in 66095 whole rock and in a number of other Apollo 16 samples. Evidence that phosphates are the major P-phases in the breccia is based on the 0.1 M acid solubility of Cl and P in the matrix sample and on elemental concentrations which are consistent with those of KREEP.

Scaling and functional morphology in strigiform hind limbs

PubMed Central

Madan, Meena A.; Rayfield, Emily J.; Bright, Jen A.

2017-01-01

Strigiformes are an order of raptorial birds consisting exclusively of owls: the Tytonidae (barn owls) and the Strigidae (true owls), united by a suite of adaptations aiding a keen predatory lifestyle, including robust hind limb elements modified for grip strength. To assess variation in hind limb morphology, we analysed how the dimensions of the major hind limb elements in subfossil and modern species scaled with body mass. Comparing hind limb element length, midshaft width, and robusticity index (RI: ratio of midshaft width to maximum length) to body mass revealed that femoral and tibiotarsal width scale with isometry, whilst length scales with negative allometry, and close to elastic similarity in the tibiotarsus. In contrast, tarsometatarsus width shows strong positive allometry with body mass, whilst length shows strong negative allometry. Furthermore, the tarsometatarsi RI scales allometrically to mass0.028, whilst a weak relationship exists in femora (mass0.004) and tibiotarsi (mass0.004). Our results suggest that tarsometatarsi play a more substantial functional role than tibiotarsi and femora. Given the scaling relationship between tarsometatarsal width and robusticity to body mass, it may be possible to infer the body mass of prehistoric owls by analysing tarsometatarsi, an element that is frequently preserved in the fossil record of owls. PMID:28327549

Elemental and topographical imaging of microscopic variations in deposition on NSTX-U and DIII-D samples

NASA Astrophysics Data System (ADS)

Skinner, C. H.; Kaita, R.; Koel, B. E.; Chrobak, C. P.; Wampler, W. R.

2017-10-01

Tokamak plasma facing components (PFCs) have surface roughness that can cause microscopic spatial variations in erosion and deposition and hence influence material migration. Previous RBS measurements showed indirect evidence for this but the spatial (0.5mm) resolution was insufficient for direct imaging. We will present elemental images at sub-micron resolution of deposition on NSTX-U and DiMES samples that show strong microscopic variations and correlate this with 3D topographical maps of surface irregularities. The elemental imaging is performed with a Scanning Auger Microprobe (SAM) that measures element-specific Auger electrons excited by an SEM electron beam. 3D topographical maps of the samples are performed with a Leica DCM 3D confocal light microscope and compared to the elemental deposition pattern. The initial results appear consistent with erosion at the downstream edges of the surface pores exposed to the incident ion flux, whereas the deeper regions are shadowed and serve as deposition traps. Support was provided through DOE Contract Numbers DE-AC02-09CH11466, DE-FC02-04ER54698 and DE-NA0003525.

Temporal and spatial variation of trace elements in atmospheric deposition around the industrial area of Puchuncaví-Ventanas (Chile) and its influence on exceedances of lead and cadmium critical loads in soils.

PubMed

Rueda-Holgado, F; Calvo-Blázquez, L; Cereceda-Balic, F; Pinilla-Gil, E

2016-02-01

Fractionation of elemental contents in atmospheric samples is useful to evaluate pollution levels for risk assessment and pollution sources assignment. We present here the main results of long-term characterization of atmospheric deposition by using a recently developed atmospheric elemental fractionation sampler (AEFS) for major and trace elements monitoring around an important industrial complex located in Puchuncaví region (Chile). Atmospheric deposition samples were collected during two sampling campaigns (2010 and 2011) at four sampling locations: La Greda (LG), Los Maitenes (LM), Puchuncaví (PU) and Valle Alegre (VA). Sample digestion and ICP-MS gave elements deposition values (Al, As, Ba, Cd, Co, Cu, Fe, K, Mn, Pb, Sb, Ti, V and Zn) in the insoluble fraction of the total atmospheric deposition. Results showed that LG location, the closest location to the industrial complex, was the more polluted sampling site having the highest values for the analyzed elements. PU and LM were the next more polluted and, finally, the lowest elements concentrations were registered at VA. The application of Principal Component Analysis and Cluster Analysis identified industrial, traffic and mineral-crustal factors. We found critical loads exceedances for Pb at all sampling locations in the area affected by the industrial emissions, more significant in LG close to the industrial complex, with a trend to decrease in 2011, whereas no exceedances due to atmospheric deposition were detected for Cd. Copyright © 2015 Elsevier Ltd. All rights reserved.

Near-road sampling of PM2. 5, BC, and fine-particle chemical components in Kathmandu Valley, Nepal

NASA Astrophysics Data System (ADS)

Shakya, Kabindra M.; Rupakheti, Maheswar; Shahi, Anima; Maskey, Rejina; Pradhan, Bidya; Panday, Arnico; Puppala, Siva P.; Lawrence, Mark; Peltier, Richard E.

2017-06-01

Semicontinuous PM2. 5 and black carbon (BC) concentrations, and 24 h integrated PM2. 5 filter samples were collected near roadways in the Kathmandu Valley, Nepal. Instruments were carried by a group of volunteer traffic police officers in the vicinity of six major roadway intersections in the Kathmandu Valley across two sampling periods in 2014. Daily PM2. 5 filter samples were analyzed for water-soluble inorganic ions, elemental carbon (EC) and organic carbon (OC), and 24 elements. Mean PM2. 5 and BC concentrations were 124.76 µg m-3 and 16.74 µgC m-3 during the drier spring sampling period, and 45.92 µg m-3 and 13.46 µgC m-3 during monsoonal sampling. Despite the lower monsoonal PM2. 5 concentrations, BC and several elements were not significantly lower during the monsoon, which indicates an important contribution of vehicle-related emissions throughout both seasons in this region. During the monsoon, there was an enhanced contribution of chemical species (elements and water-soluble inorganic ions), except secondary inorganic ions, and BC to PM2. 5 (crustal elements: 19 %; heavy metals: 5 %; and BC: 39 %) compared to those in spring (crustal elements: 9 %; heavy metals: 1 %; and BC: 18 %). Silica, calcium, aluminum, and iron were the most abundant elements during both spring and the monsoon, with total concentrations of 12.13 and 8.85 µg m-3, respectively. PM2. 5 and BC showed less spatial variation compared to that for individual chemical species.

Pre-vector variational inequality

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lin, Lai-Jiu

1994-12-31

Let X be a Hausdorff topological vector space, (Y, D) be an ordered Hausdorff topological vector space ordered by convex cone D. Let L(X, Y) be the space of all bounded linear operator, E {improper_subset} X be a nonempty set, T : E {yields} L(X, Y), {eta} : E {times} E {yields} E be functions. For x, y {element_of} Y, we denote x {not_lt} y if y - x intD, where intD is the interior of D. We consider the following two problems: Find x {element_of} E such that < T(x), {eta}(y, x) > {not_lt} 0 for all y {element_of}more » E and find x {element_of} E, < T(x), {eta}(y, x) > {not_gt} 0 for all y {element_of} E and < T(x), {eta}(y, x) >{element_of} C{sub p}{sup w+} = {l_brace} {element_of} L(X, Y) {vert_bar}< l, {eta}(x, 0) >{not_lt} 0 for all x {element_of} E{r_brace} where < T(x), y > denotes linear operator T(x) at y, that is T(x), (y). We called Pre-VVIP the Pre-vector variational inequality problem and Pre-VCP complementary problem. If X = R{sup n}, Y = R, D = R{sub +} {eta}(y, x) = y - x, then our problem is the well-known variational inequality first studies by Hartman and Stampacchia. If Y = R, D = R{sub +}, {eta}(y, x) = y - x, our problem is the variational problem in infinite dimensional space. In this research, we impose different condition on T(x), {eta}, X, and < T(x), {eta}(y, x) > and investigate the existences theorem of these problems. As an application of one of our results, we establish the existence theorem of weak minimum of the problem. (P) V - min f(x) subject to x {element_of} E where f : X {yields} Y si a Frechet differentiable invex function.« less

Geochemical Evolution of the Louisville Seamount Chain

NASA Astrophysics Data System (ADS)

Vanderkluysen, L.; Mahoney, J. J.; Koppers, A. A.; Lonsdale, P. F.

2007-12-01

The Louisville seamount chain is a 4300 km long chain of submarine volcanoes in the southwestern Pacific that is commonly thought to represent a hotspot track. It spans an ~80 Myr age range, comparable to that of the Hawaiian-Emperor chain (Koppers et al., G-cubed, 5 (6), 2004). The few previously dredged igneous samples are dominantly basaltic and alkalic, and have been inferred to represent post-shield volcanism (Hawkins et al., AGU Monograph, 43, 235, 1987). Their isotope and trace element signatures suggest an unusually homogenous mantle source (Cheng et al., AGU Monograph, 43, 283, 1987). Dredging in 2006, during the AMAT02RR cruise of the R.V. Revelle, was carried out in the hope of recovering both shield and post-shield samples and of exploring the geochemical evolution of the chain. Igneous rocks were recovered from 33 stations on 23 seamounts covering some 47 Myr of the chain's history. Our study, focusing on the major and trace element and Sr, Nd and Pb isotopic characteristics of these samples, shows that all are alkalic basalts, basanites and tephrites containing normative nepheline. Variations in major and trace elements appear to be controlled predominantly by variable extents of melting and fractional crystallization, with little influence from mantle source heterogeneity. Indeed, age-corrected isotopic values define only a narrow range, in agreement with long-term source homogeneity relative to the scale of melting; e.g., ɛNd varies from +4.1 to +5.7, 206Pb/204Pb from 19.048 to 19.281, and 87Sr/86Sr from 0.70362 to 0.70398. These values broadly fall within the fields of the proposed "C" or "FOZO" mantle end-members. However, small variations are present, with less radiogenic Nd and Pb isotope ratios at the older, western end of the chain, defining a trend toward a broadly EM2-like composition. Although some workers have postulated that the Louisville hotspot was the source of the ~120 Myr Ontong Java Plateau, our samples are isotopically distinct from any known Ontong Java compositions.

Biomechanical implications of intraspecific shape variation in chimpanzee crania: moving towards an integration of geometric morphometrics and finite element analysis

PubMed Central

Smith, Amanda L.; Benazzi, Stefano; Ledogar, Justin A.; Tamvada, Kelli; Smith, Leslie C. Pryor; Weber, Gerhard W.; Spencer, Mark A.; Dechow, Paul C.; Grosse, Ian R.; Ross, Callum F.; Richmond, Brian G.; Wright, Barth W.; Wang, Qian; Byron, Craig; Slice, Dennis E.; Strait, David S.

2014-01-01

In a broad range of evolutionary studies, an understanding of intraspecific variation is needed in order to contextualize and interpret the meaning of variation between species. However, mechanical analyses of primate crania using experimental or modeling methods typically encounter logistical constraints that force them to rely on data gathered from only one or a few individuals. This results in a lack of knowledge concerning the mechanical significance of intraspecific shape variation that limits our ability to infer the significance of interspecific differences. This study uses geometric morphometric methods (GM) and finite element analysis (FEA) to examine the biomechanical implications of shape variation in chimpanzee crania, thereby providing a comparative context in which to interpret shape-related mechanical variation between hominin species. Six finite element models (FEMs) of chimpanzee crania were constructed from CT scans following shape-space Principal Component Analysis (PCA) of a matrix of 709 Procrustes coordinates (digitized onto 21 specimens) to identify the individuals at the extremes of the first three principal components. The FEMs were assigned the material properties of bone and were loaded and constrained to simulate maximal bites on the P3 and M2. Resulting strains indicate that intraspecific cranial variation in morphology is associated with quantitatively high levels of variation in strain magnitudes, but qualitatively little variation in the distribution of strain concentrations. Thus, interspecific comparisons should include considerations of the spatial patterning of strains rather than focus only their magnitude. PMID:25529239

Major and trace element concentrations in samples from 72275 and 72255. [chemical composition of lunar rocks

NASA Technical Reports Server (NTRS)

Haskin, L. A.; Blanchard, D. P.; Korotev, R.; Jacobs, J. W.; Brannon, J. A.; Herrmann, A. G.

1974-01-01

Analytical data have been obtained for Co, Sc, Hf, Zn, Cr, Ga, Rb, Cs, Ni, major elements, and rare earth elements in eight samples from boulder 1. The data for trace elements were obtained by radiochemical neutron activation analysis. Major elements, except Na and Mn, were obtained by atomic absorption spectral photometry. Values for Na and Mn were obtained by neutron activation analysis of the same powder that was later dissolved to provide the atomic absorption analyses.

Modeling the effects of an offset of the center of symmetry in the zodiacal cloud

NASA Astrophysics Data System (ADS)

Holmes, E. K.; Dermott, S. F.; Xu, Y. L.; Wyatt, M.; Jayaraman, S.

1998-04-01

There is a possible connection between structure in circumstellar dust clouds and the presence of planets, our own zodiacal cloud being the prime example. Asymmetries in such clouds could be diagnostic of planets which would be otherwise undetectable. One such feature is an offset of the center of symmetry of the disk with respect to the central star. The offset is caused by the forced eccentricities (ef) of particles in the cloud. The orbit of a particle can be described by a set of five orbital elements: the semi-major axis (a), eccentricity (e), inclination (I), longitude of ascending node (Omega) and the argument of pericenter (omega). In low order secular perturbation theory, osculating elements of small bodies are decomposed into proper and forced elements. The proper elements are dependent on initial conditions while the forced elements are imposed on the particle's orbit by the gravitational perturbations of the planets. This decomposition is still applicable in the presence of drag forces. We compare COBE observations of the variation in average polar brightness of the background cloud, (N + S)/2, with ecliptic longitude of Earth with those of a model cloud made of asteroidal particles which populate the inner solar system according to a 1/rgamma where (gamma) = 1 (Poynting Robertson light drag) distribution. The variation with ecliptic longitude of Earth in mean polar brightness is shown in for the 25 micron waveband. Sine curves are fit to both the COBE observations and the model. The variation in (N+S)/2 with ecliptic longitude of Earth can be represented as a superposition of two sine curves: one for the variation in (N + S)/2 due to the Earth's eccentric orbit and the other for the variation in (N + S)/2 due to the forced eccentricities of particles in the cloud. If the cloud were symmetric about the Sun (i.e., if there were no offset), the maximum and minimum brightnesses of the cloud would occur at perihelion and aphelion, respectively. Looking at the model, one can see that the minimum does occur at Earth's aphelion (282.9 deg). However, the minimum of the COBE curve is clearly displaced from aphelion, showing that the center of symmetry of the cloud is displaced from the Sun. If we could turn off the effect of the Earth's eccentricity, we could isolate the sine curve due to ef. When we do this for the model cloud however, we do not see a variation in (N + S)/2 for two reasons: 1) Although the particle orbits are circularized due to Poynting Robertson drag (PR drag), the wedge shape of the cloud cancels out any number density variation as a function of radial distance; and 2) Even though we would expect the orbits of the particles to be more densely spaced at perihelion than at aphelion (provided all the particles had the same ef and omegaf, due to Kepler's Second Law the particles spend less time at perihelion than at aphelion thus canceling out any noticeable effect on the number density. However, when we build a new model cloud governed by a constant distribution of particles (1/rgamma where gamma = 0) instead of a 1/r distribution, we do see a sinusoidal variation in (N + S)/2 with ecliptic longitude of Earth. These results imply that the particles contributing to the observed offset do not have a PR drag distribution (i.e., they are not simply asteroidal particles). Future work will determine whether cometary particles (having a theoretical gamma = 1.5), collisionally evolved asteroidal particles, or a combination of both types of particles are responsible for the offset of the center of symmetry of the zodiacal cloud.

Natural frequencies of thin rectangular plates clamped on contour using the Finite Element Method

NASA Astrophysics Data System (ADS)

(Barboni Haţiegan, L.; Haţiegan, C.; Gillich, G. R.; Hamat, C. O.; Vasile, O.; Stroia, M. D.

2018-01-01

This paper presents the determining of natural frequencies of plates without and with damages using the finite element method of SolidWorks program. The first thirty natural frequencies obtained for thin rectangular rectangular plates clamped on contour without and with central damages a for different dimensions. The relative variation of natural frequency was determined and the obtained results by the finite element method (FEM) respectively relative variation of natural frequency, were graphically represented according to their vibration natural modes. Finally, the obtained results were compared.

Semianalytic Satellite Theory (SST): Mathematical Algorithms

DTIC Science & Technology

1994-01-01

orbital state of a satellite with an equinoctial element set (a,,. •a 6...applied to a wide variety of orbit element sets . The equinoctial elements were chosen for SST because the variational equations for the equinoctial ...Shaver, 1980]. 2.1.1 Definition of the Equinoctial Elements There are six elements in the equinoctial element set : a, = a sernimajor axis a2 = h a3 =

A probabilistic Hu-Washizu variational principle

NASA Technical Reports Server (NTRS)

Liu, W. K.; Belytschko, T.; Besterfield, G. H.

1987-01-01

A Probabilistic Hu-Washizu Variational Principle (PHWVP) for the Probabilistic Finite Element Method (PFEM) is presented. This formulation is developed for both linear and nonlinear elasticity. The PHWVP allows incorporation of the probabilistic distributions for the constitutive law, compatibility condition, equilibrium, domain and boundary conditions into the PFEM. Thus, a complete probabilistic analysis can be performed where all aspects of the problem are treated as random variables and/or fields. The Hu-Washizu variational formulation is available in many conventional finite element codes thereby enabling the straightforward inclusion of the probabilistic features into present codes.

Systematic variation of rare earths in monazite

USGS Publications Warehouse

Murata, K.J.; Rose, H.J.; Carron, M.K.

1953-01-01

Ten monazites from widely scattered localities have been analyzed for La, Ce, Pr, Nd, Sm, Gd, Y and Th by means of a combined chemical and emission spectrographic method. The analytical results, calculated to atomic percent of total rare earths (thorium excluded), show a considerable variation in the proportions of every element except praseodymium, which is relatively constant. The general variation trends of the elements may be calculated by assuming that the monazites represent different stages in a fractional precipitation process, and by assuming that there is a gradational increase in the precipitability of rare earth elements with decreasing ionic radius. Fractional precipitation brings about an increase in lanthanum and cerium, little change in praseodymium, and a decrease in neodymium, samarium, gadolinium, and yttrium. Deviations from the calculated lines of variation consist of a simultaneous, abnormal increase or decrease in the proportions of cerium, praseodymium, and neodymium with antipathetic decrease or increase in the proportions of the other elements. These deviations are ascribed to abnormally high or low temperatures that affect the precipitability of the central trio of elements (Ce, Pr, Nd) relatively more than that of the other elements. The following semiquantitative rules have been found useful in describing the composition of rare earths from monazite: 1. 1. The sum of lanthanum and neodymium is very nearly a constant at 42 ?? 2 atomic percent. 2. 2. Praseodymium is very nearly constant at 5 ?? 1 atomic percent. 3. 3. The sum of Ce, Sm, Gd, and Y is very nearly a constant at 53 ?? 3 atomic percent. No correlation could be established between the content of Th and that of any of the rare earth elements. ?? 1953.

Anticounterfeiting features of artistic screening

NASA Astrophysics Data System (ADS)

Ostromoukhov, Victor; Rudaz, Nicolas; Amidror, Isaac; Emmel, Patrick; Hersch, Roger D.

1996-12-01

In a recent publication (Ostromoukhov95), a new image reproduction technique, artistic screening, was presented. It incorporates freely created artistic screen elements for generating halftones. Fixed predefined dot contours associated with given intensity levels determine the screen dot shape's growing behavior. Screen dot contours associated with each intensity level are obtained by interpolation between the fixed predefined dot contours. A user-defined mapping transforms screen elements from screen element definition space to screen element rendition space. This mapping can be tuned to produce various effects such as dilatations, contractions and non-linear deformations of the screen element grid. Although artistic screening has been designed mainly for performing the creation of graphic designs of high artistic quality, it also incorporates several important anti-counterfeiting features. For example, bank notes or other valuable printed matters produced with artistic screening may incorporate both full size and microscopic letters of varying shape into the image halftoning process. Furthermore, artistic screening can be used for generating screen dots at varying frequencies and orientations, which are well known for inducing strong moire effects when scanned by a digital color copier or a desktop scanner. However, it is less known that frequency-modulated screen dots have at each screen element size a different reproduction behavior (dot gain). When trying to reproduce an original by analog means, such as a photocopier, the variations in dot gain induce strong intensity variations at the same original intensity levels. In this paper, we present a method for compensating such variations for the target printer, on which the original security document is to be printed. Potential counterfeiters who would like to reproduce the original with a photocopying device may only be able to adjust the dot gain for the whole image and will therefore be unable to eliminate the undesired intensity variations produced by variable frequency screen elements.

Alkalic Lavas From Nintoku Seamount, Emperor Seamount Chain: Geochemistry of Hawaiian Post-Shield Magmatism at 55 Ma

NASA Astrophysics Data System (ADS)

Shafer, J. T.; Gudding, J. A.; Neal, C. R.; Regelous, M.

2002-12-01

Ocean Drilling Project (ODP) Leg 197, Site 1205 penetrated 283 m into the volcanic basement of Nintoku Seamount, which is located roughly half-way along the Emperor Seamount Chain and has been dated at approximately 55-56 Ma by 40Ar-39Ar (R. Duncan, pers. comm., 2002). 25 subaerially-erupted lava flows, together with interflow sediments and soil horizons, were recovered. We report major and trace element compositions of 33 rock samples spanning the entire lava sequence and hawaiite clasts from a conglomerate immediately overlying the igneous basement. The volcanic rocks at Site 1205 are dominantly alkalic to intermediate basalts with between 5 and 11% MgO, with the degree of alkalinity generally increasing up-section, and the eruption rate (inferred from the thickness and abundance of interflow soils) appears to have decreased with time. Two flows in the lower half of the hole are tholeiitic and divide the section into two different alkalic basalt series. One of these flows contains accumulated olivine crystals and has a picritic composition. The upper alkalic series generally becomes enriched in the highly incompatible elements (ITEs) up-section from the tholeiitic units and is overlain by a conglomerate that contains cobbles of hawaiite that are highly enriched in ITEs. Normalized patterns are subparallel to those of the upper series of alkalic basalts, suggesting the hawaiites may be related by fractional crystallization. The lower alkalic series contains basalts that are among the most ITE enriched of the recovered basement sequence, but does not show the same variations as the upper series. The petrology of the Site 1205 lavas is very similar to those of lavas erupted during the later evolutionary stages of young volcanoes from the Hawaiian Islands and were probably all erupted during the post-shield alkalic stage; at Nintoku the post-shield alkalic cap appears to be relatively thick (at least 300m) compared to many other Hawaiian volcanoes, but is similar to that of Mauna Kea and Haleakala. Fractionation of the observed phenocryst phases (olivine and plagioclase) was responsible for much of the compositional variation within the Nintoku basaltic lavas, and the low Sc concentrations of the hawaiites show that they have also fractionated clinopyroxene. However, variations in incompatible trace element ratios indicate that the lavas cannot all be related by crystal fractionation from a single parental magma. Nintoku lavas exhibit broad similarities in major and trace element compositions of post-shield lavas from the Hawaiian Islands. For example, La/Yb ratios of the 1205 basalts (5-13) are similar to those of alkali basalts from Mauna Kea (5-12), but lower than those from Haleakala (12-17). However, distinct differences also occur. Nintoku lavas have relatively low Zr concentrations, so that they plot below the main Hawaiian array on a Zr/Nb-La/Yb diagram. Previous studies have show that lavas from the oldest Emperor Seamounts have relatively depleted incompatible trace element compositions; our data suggest that by 56 Ma, lavas erupted above the Hawaiian Hotspot were essentially similar to young (<5 Ma) lavas from the Hawaiian Islands.

Analysis of superconducting electromagnetic finite elements based on a magnetic vector potential variational principle

NASA Technical Reports Server (NTRS)

Schuler, James J.; Felippa, Carlos A.

1991-01-01

Electromagnetic finite elements are extended based on a variational principle that uses the electromagnetic four potential as primary variable. The variational principle is extended to include the ability to predict a nonlinear current distribution within a conductor. The extension of this theory is first done on a normal conductor and tested on two different problems. In both problems, the geometry remains the same, but the material properties are different. The geometry is that of a 1-D infinite wire. The first problem is merely a linear control case used to validate the new theory. The second problem is made up of linear conductors with varying conductivities. Both problems perform well and predict current densities that are accurate to within a few ten thousandths of a percent of the exact values. The fourth potential is then removed, leaving only the magnetic vector potential, and the variational principle is further extended to predict magnetic potentials, magnetic fields, the number of charge carriers, and the current densities within a superconductor. The new element produces good results for the mean magnetic field, the vector potential, and the number of superconducting charge carriers despite a relatively high system condition number. The element did not perform well in predicting the current density. Numerical problems inherent to this formulation are explored and possible remedies to produce better current predicting finite elements are presented.

Assessment of species-specific and temporal variations of major, trace and rare earth elements in vineyard ambient using moss bags.

PubMed

Milićević, Tijana; Aničić Urošević, Mira; Vuković, Gordana; Škrivanj, Sandra; Relić, Dubravka; Frontasyeva, Marina V; Popović, Aleksandar

2017-10-01

Since the methodological parameters of moss bag biomonitoring have rarely been investigated for the application in agricultural areas, two mosses, Sphagnum girgensohnii (a species of the most recommended biomonitoring genus) and Hypnum cupressiforme (commonly available), were verified in a vineyard ambient. The moss bags were exposed along transects in six vineyard parcels during the grapevine season (March‒September 2015). To select an appropriate period for the reliable 'signal' of the element enrichment in the mosses, the bags were simultaneously exposed during five periods (3 × 2 months, 1 × 4 months, and 1 × 6 months). Assuming that vineyard is susceptible to contamination originated from different agricultural treatments, a wide range of elements (41) were determined in the moss and topsoil samples. The mosses were significantly enriched by the elements during the 2-month bag exposure which gradually increasing up to 6 months, but Cu and Ni exhibited the noticeable fluctuations during the grapevine season. However, the 6-month exposure of moss bags could be recommended for comparative studies among different vineyards because it reflects the ambient pollution comprising unpredictable treatments of grapevine applied during the whole season. Although higher element concentrations were determined in S. girgensohnii than H. cupressiforme, both species reflected the spatio-temporal changes in the ambient element content. Moreover, the significant correlation of the element (Cr, Cu, Sb, and Ti) concentrations between the mosses, and the same pairs of the elements correlated within the species, imply the comparable use of S. girgensohnii and H. cupressiforme in the vineyard (agricultural) ambient. Finally, both the moss bags and the soil analyses suggest that vineyard represents a dominant diffuse pollution source of As, Cr, Cu, Ni, Fe, and V. Copyright © 2017 Elsevier Inc. All rights reserved.

Biogeochemical variability of plants at native and altered sites, San Juan Basin, New Mexico

USGS Publications Warehouse

Gough, L.P.; Severson, R.C.

1981-01-01

The San Juan Basin is becoming a major energy resource region. The anticipated increase in strip mining for coal can be expected to alter the geochemical and biogeochemical environment. because such activities destroy the native vegetation communities, rearrange the rock strata, and disrupt natural soil development. This study investigated the variability in the biogeochemistry of native plant species at both undisturbed and altered sites and assessed the importance of the observed differences. Three studies are involved in this investigation: Study 1, the biogeochemical variability of native species found at sites throughout that part of the basin underlain by economically recoverable coal; Study 2, the biogeochemical variability of native species growing on soils considered favorable for use in the topsoiling of spoil areas; and Study 3, the biogeochemical variability of native species on rehabilitated sites at the San Juan coal mine. Summary statistics for concentrations of 35 elements (and ash yield) are reported in Study 1 for galleta grass, broom snakeweed, and fourwing saltbush. The concentrations of manganese, molybdenum, nickel, and uranium (and possibly iron and selenium) in galleta show regional patterns, with the highest values generally found in the south-central region and western edge of the study area. Differences in the concentration of elements between species was generally subtle (less than a factor of two) except for the following: ash yield of saltbush was two times that of the other plants; boron in snakeweed and saltbush was four times greater than in galleta; iron in galleta was two times greater than in saltbush; and, calcium, magnesium, potassium, phosphorus, and sulfur were generally highest in saltbush. Summary statistics (including the 95-percent expected range) for concentrations of 35 elements (and ash yield) are reported from Study 2 for galleta and broom snakeweed growing on the Sheppard, Shiprock, and Doak soil association. Significant regional (greater than 10 km) variation for aluminum, iron, sulfur, vanadium, and zirconium in galleta are reported; however, for most elements, a significant proportion of the variation in the data was measured locally (less than 0.1 km). This variation indicates that samples of galleta and snakeweed taken more than 10 km apart vary, in their element composition, little more than plants sampled as close together as 0.1 km. The concentrations of 35 elements (and ash yield) in alkali sacaton and fourwing saltbush, which were collected on a rehabilitation plot at the San Juan mine (Study 3), are compared with those of control samples of similar material from native sites from throughout the ,an Juan Basin. Concentrations of aluminum, arsenic, boron, cobalt, copper, fluorine, iron, lead, manganese, sodium, and uranium in samples of saltbush growing over spoil generally exceed the levels of these elements in control samples. For many elements, concentrations in mine samples are from two to five times higher 1 han concentrations in the control samples. Sodium concentrations i saltbush, however, were 100 times higher in mine samples than in control samples. This high concentration reflects a corresponding : OO-fold increase in the extractable sodium levels in spoil material s compared to C-horizon control samples. Sampled plants from the l1ine area, spaced relatively close together (5 m (meters) or less), vary greatly in their element compositions, apparently in response 1 J the heterogenous composition and element availability of the l1ine soils. Topsoiling to a depth of 20 cm (centimeters) does little to meliorate the uptake of elements from spoil by saltbush.

Compilation of minimum and maximum isotope ratios of selected elements in naturally occurring terrestrial materials and reagents

USGS Publications Warehouse

Coplen, T.B.; Hopple, J.A.; Böhlke, J.K.; Peiser, H.S.; Rieder, S.E.; Krouse, H.R.; Rosman, K.J.R.; Ding, T.; Vocke, R.D.; Revesz, K.M.; Lamberty, A.; Taylor, P.; De Bievre, P.

2002-01-01

Documented variations in the isotopic compositions of some chemical elements are responsible for expanded uncertainties in the standard atomic weights published by the Commission on Atomic Weights and Isotopic Abundances of the International Union of Pure and Applied Chemistry. This report summarizes reported variations in the isotopic compositions of 20 elements that are due to physical and chemical fractionation processes (not due to radioactive decay) and their effects on the standard atomic weight uncertainties. For 11 of those elements (hydrogen, lithium, boron, carbon, nitrogen, oxygen, silicon, sulfur, chlorine, copper, and selenium), standard atomic weight uncertainties have been assigned values that are substantially larger than analytical uncertainties because of common isotope abundance variations in materials of natural terrestrial origin. For 2 elements (chromium and thallium), recently reported isotope abundance variations potentially are large enough to result in future expansion of their atomic weight uncertainties. For 7 elements (magnesium, calcium, iron, zinc, molybdenum, palladium, and tellurium), documented isotope-abundance variations in materials of natural terrestrial origin are too small to have a significant effect on their standard atomic weight uncertainties. This compilation indicates the extent to which the atomic weight of an element in a given material may differ from the standard atomic weight of the element. For most elements given above, data are graphically illustrated by a diagram in which the materials are specified in the ordinate and the compositional ranges are plotted along the abscissa in scales of (1) atomic weight, (2) mole fraction of a selected isotope, and (3) delta value of a selected isotope ratio. There are no internationally distributed isotopic reference materials for the elements zinc, selenium, molybdenum, palladium, and tellurium. Preparation of such materials will help to make isotope ratio measurements among laboratories comparable. The minimum and maximum concentrations of a selected isotope in naturally occurring terrestrial materials for selected chemical elements reviewed in this report are given below: Isotope Minimum mole fraction Maximum mole fraction -------------------------------------------------------------------------------- 2H 0 .000 0255 0 .000 1838 7Li 0 .9227 0 .9278 11B 0 .7961 0 .8107 13C 0 .009 629 0 .011 466 15N 0 .003 462 0 .004 210 18O 0 .001 875 0 .002 218 26Mg 0 .1099 0 .1103 30Si 0 .030 816 0 .031 023 34S 0 .0398 0 .0473 37Cl 0 .240 77 0 .243 56 44Ca 0 .020 82 0 .020 92 53Cr 0 .095 01 0 .095 53 56Fe 0 .917 42 0 .917 60 65Cu 0 .3066 0 .3102 205Tl 0 .704 72 0 .705 06 The numerical values above have uncertainties that depend upon the uncertainties of the determinations of the absolute isotope-abundance variations of reference materials of the elements. Because reference materials used for absolute isotope-abundance measurements have not been included in relative isotope abundance investigations of zinc, selenium, molybdenum, palladium, and tellurium, ranges in isotopic composition are not listed for these elements, although such ranges may be measurable with state-of-the-art mass spectrometry. This report is available at the url: http://pubs.water.usgs.gov/wri014222.

Contemporary Issues in Science. Implementation Manual.

ERIC Educational Resources Information Center

Staten Island Continuum of Education, NY.

Contemporary Issues in Science Program (CIIS) is designed to provide teachers and students with the necessary tools and strategies for bringing contemporary scientific issues into the classroom. Provided in this document are discussions of the three major elements in the program, support elements, and major activities. Major elements include the…

LTR Retrotransposons Contribute to Genomic Gigantism in Plethodontid Salamanders

PubMed Central

Sun, Cheng; Shepard, Donald B.; Chong, Rebecca A.; López Arriaza, José; Hall, Kathryn; Castoe, Todd A.; Feschotte, Cédric; Pollock, David D.; Mueller, Rachel Lockridge

2012-01-01

Among vertebrates, most of the largest genomes are found within the salamanders, a clade of amphibians that includes 613 species. Salamander genome sizes range from ∼14 to ∼120 Gb. Because genome size is correlated with nucleus and cell sizes, as well as other traits, morphological evolution in salamanders has been profoundly affected by genomic gigantism. However, the molecular mechanisms driving genomic expansion in this clade remain largely unknown. Here, we present the first comparative analysis of transposable element (TE) content in salamanders. Using high-throughput sequencing, we generated genomic shotgun data for six species from the Plethodontidae, the largest family of salamanders. We then developed a pipeline to mine TE sequences from shotgun data in taxa with limited genomic resources, such as salamanders. Our summaries of overall TE abundance and diversity for each species demonstrate that TEs make up a substantial portion of salamander genomes, and that all of the major known types of TEs are represented in salamanders. The most abundant TE superfamilies found in the genomes of our six focal species are similar, despite substantial variation in genome size. However, our results demonstrate a major difference between salamanders and other vertebrates: salamander genomes contain much larger amounts of long terminal repeat (LTR) retrotransposons, primarily Ty3/gypsy elements. Thus, the extreme increase in genome size that occurred in salamanders was likely accompanied by a shift in TE landscape. These results suggest that increased proliferation of LTR retrotransposons was a major molecular mechanism contributing to genomic expansion in salamanders. PMID:22200636

Isotope-abundance variations and atomic weights of selected elements: 2016 (IUPAC Technical Report)

USGS Publications Warehouse

Coplen, Tyler B.; Shrestha, Yesha

2016-01-01

There are 63 chemical elements that have two or more isotopes that are used to determine their standard atomic weights. The isotopic abundances and atomic weights of these elements can vary in normal materials due to physical and chemical fractionation processes (not due to radioactive decay). These variations are well known for 12 elements (hydrogen, lithium, boron, carbon, nitrogen, oxygen, magnesium, silicon, sulfur, chlorine, bromine, and thallium), and the standard atomic weight of each of these elements is given by IUPAC as an interval with lower and upper bounds. Graphical plots of selected materials and compounds of each of these elements have been published previously. Herein and at the URL http://dx.doi.org/10.5066/F7GF0RN2, we provide isotopic abundances, isotope-delta values, and atomic weights for each of the upper and lower bounds of these materials and compounds.

Nationwide Drinking Water Sampling Campaign for Exposure Assessments in Denmark

PubMed Central

Voutchkova, Denitza Dimitrova; Hansen, Birgitte; Ernstsen, Vibeke; Kristiansen, Søren Munch

2018-01-01

Nationwide sampling campaign of treated drinking water of groundwater origin was designed and implemented in Denmark in 2013. The main purpose of the sampling was to obtain data on the spatial variation of iodine concentration and speciation in treated drinking water, which was supplied to the majority of the Danish population. This data was to be used in future exposure and epidemiologic studies. The water supply sector (83 companies, owning 144 waterworks throughout Denmark) was involved actively in the planning and implementation process, which reduced significantly the cost and duration of data collection. The dataset resulting from this collaboration covers not only iodine species (I−, IO3−, TI), but also major elements and parameters (pH, electrical conductivity, DOC, TC, TN, F−, Cl−, NO3−, SO42−, Ca2+, Mg2+, K+, Na+) and a long list of trace elements (n = 66). The water samples represent 144 waterworks abstracting about 45% of the annual Danish groundwater abstraction for drinking water purposes, which supply about 2.5 million Danes (45% of all Danish residents). This technical note presents the design, implementation, and limitations of such a sampling design in detail in order (1) to facilitate the future use of this dataset, (2) to inform future replication studies, or (3) to provide an example for other researchers. PMID:29518987

Source apportionment of PM2.5 at urban and suburban areas of the Pearl River Delta region, south China - With emphasis on ship emissions.

PubMed

Tao, Jun; Zhang, Leiming; Cao, Junji; Zhong, Liuju; Chen, Dongsheng; Yang, Yihong; Chen, Duohong; Chen, Laiguo; Zhang, Zhisheng; Wu, Yunfei; Xia, Yunjie; Ye, Siqi; Zhang, Renjian

2017-01-01

Daily PM 2.5 samples were collected at an urban site in Guangzhou in 2014 and at a suburban site in Zhuhai in 2014-2015. Samples were subject to chemical analysis for various chemical components including organic carbon (OC), element carbon (EC), major water-soluble inorganic ions, and trace elements. The annual average PM 2.5 mass concentration was 48±22μgm -3 and 45±25μgm -3 in Guangzhou and Zhuhai, respectively, with the highest seasonal average concentration in winter and the lowest in summer at both sites. Regional transport of pollutants accompanied with different air mass origins arriving at the two sites and pollution sources in between the two cities caused larger seasonal variations in Zhuhai (>a factor of 3.5) than in Guangzhou (17% of PM 2.5 mass concentrations. Copyright © 2016 Elsevier B.V. All rights reserved.

Concentrations and geographical variations of selected toxic elements in meat from semi-domesticated reindeer (Rangifer tarandus tarandus L.) in mid- and northern Norway: evaluation of risk assessment.

PubMed

Hassan, Ammar Ali; Brustad, Magritt; Sandanger, Torkjel M

2012-05-01

Meat samples (n = 100) from semi-domesticated reindeer (Rangifer tarandus tarandus L.) were randomly collected from 10 grazing districts distributed over four Norwegian counties in 2008 and 2009. The main aim was to study concentrations and geographical variations in selected toxic elements; cadmium (Cd), lead (Pb), arsenic (As), copper (Cu), nickel (Ni) and vanadium (V) in order to assess the risk associated with reindeer meat consumption. Sample solutions were analysed using an inductively coupled plasma high resolution mass spectrometer (ICP-HRMS), whereas analysis of variance (ANOVA) was used for statistical analyses. Geographical variations in element concentrations were revealed, with As and Cd demonstrating the largest geographical differences. No clear geographical gradient was observed except for the east-west downward gradient for As. The As concentrations were highest in the vicinity of the Russian border, and only Cd was shown to increase with age (p < 0.05). Sex had no significant effect on the concentration of the studied elements. The concentrations of all the studied elements in reindeer meat were generally low and considerably below the maximum levels (ML) available for toxic elements set by the European Commission (EC). Thus, reindeer meat is not likely to be a significant contributor to the human body burden of toxic elements.

The Asian clam Corbicula fluminea as a biomonitor of trace element contamination: Accounting for different sources of variation using an hierarchical linear model

USGS Publications Warehouse

Shoults-Wilson, W. A.; Peterson, J.T.; Unrine, J.M.; Rickard, J.; Black, M.C.

2009-01-01

In the present study, specimens of the invasive clam, Corbicula fluminea, were collected above and below possible sources of potentially toxic trace elements (As, Cd, Cr, Cu, Hg, Pb, and Zn) in the Altamaha River system (Georgia, USA). Bioaccumulation of these elements was quantified, along with environmental (water and sediment) concentrations. Hierarchical linear models were used to account for variability in tissue concentrations related to environmental (site water chemistry and sediment characteristics) and individual (growth metrics) variables while identifying the strongest relations between these variables and trace element accumulation. The present study found significantly elevated concentrations of Cd, Cu, and Hg downstream of the outfall of kaolin-processing facilities, Zn downstream of a tire cording facility, and Cr downstream of both a nuclear power plant and a paper pulp mill. Models of the present study indicated that variation in trace element accumulation was linked to distance upstream from the estuary, dissolved oxygen, percentage of silt and clay in the sediment, elemental concentrations in sediment, shell length, and bivalve condition index. By explicitly modeling environmental variability, the Hierarchical linear modeling procedure allowed the identification of sites showing increased accumulation of trace elements that may have been caused by human activity. Hierarchical linear modeling is a useful tool for accounting for environmental and individual sources of variation in bioaccumulation studies. ?? 2009 SETAC.

Concentrations and Geographical Variations of Selected Toxic Elements in Meat from Semi-Domesticated Reindeer (Rangifer tarandus tarandus L.) in Mid- and Northern Norway: Evaluation of Risk Assessment

PubMed Central

Hassan, Ammar Ali; Brustad, Magritt; Sandanger, Torkjel M.

2012-01-01

Meat samples (n = 100) from semi-domesticated reindeer (Rangifer tarandus tarandus L.) were randomly collected from 10 grazing districts distributed over four Norwegian counties in 2008 and 2009. The main aim was to study concentrations and geographical variations in selected toxic elements; cadmium (Cd), lead (Pb), arsenic (As), copper (Cu), nickel (Ni) and vanadium (V) in order to assess the risk associated with reindeer meat consumption. Sample solutions were analysed using an inductively coupled plasma high resolution mass spectrometer (ICP-HRMS), whereas analysis of variance (ANOVA) was used for statistical analyses. Geographical variations in element concentrations were revealed, with As and Cd demonstrating the largest geographical differences. No clear geographical gradient was observed except for the east-west downward gradient for As. The As concentrations were highest in the vicinity of the Russian border, and only Cd was shown to increase with age (p < 0.05). Sex had no significant effect on the concentration of the studied elements. The concentrations of all the studied elements in reindeer meat were generally low and considerably below the maximum levels (ML) available for toxic elements set by the European Commission (EC). Thus, reindeer meat is not likely to be a significant contributor to the human body burden of toxic elements. PMID:22754467

Aerosol composition and its sources at the King Sejong Station, Antarctic peninsula

NASA Astrophysics Data System (ADS)

Mishra, Vinit K.; Kim, Ki-Hyun; Hong, Sungmin; Lee, Khanghyun

The annual cycles of major metals and ions in suspended particulate matters (SPM) have been investigated at a costal site of the Antarctic Peninsula in order to elucidate temporal variations as well as major source processes responsible for their formation. The measurements had been performed from January 2000 to December 2001 at the Korean Antarctic research station, 'King Sejong' (62°13' S, 58°47' W). The observed time series of important aerosol components showed clear seasonal variation patterns, while the mean elemental concentrations (e.g., 1875 (Al), 10.3 (Ba), 0.3 (Bi), 1.3 (Cd), 1.7 pg m -3 (Co)) were generally compatible with those reported previously. The presence of high EF values with respect to both mean crustal and seawater composition (such as Bi, Cd, Cr, Cu, Ni, V, and Zn), however, suggests a possibly important role of anthropogenic processes in this remote site. In contrast, the concentrations of ionic species were not clearly distinguishable from those of other Antarctic sites; but the consideration of ionic mass balance between cations and anions pointed out the uniqueness of their source/sink processes in the study area. The major source processes of those aerosol components were also investigated using a series of statistical analyses. The overall results of our study indicated the dominance of several processes (or sources) such as sea-salt emission, secondary aerosol formation, and anthropogenic pollution from both local and distant sources.

Highly siderophile element constraints on the genesis of Azorean lavas

NASA Astrophysics Data System (ADS)

Waters, C. L.; Watanabe, S.; Olson, K. M.; Walker, R. J.; Widom, E.; Hanan, B. B.; Day, J. M.

2013-12-01

Ocean island basalts (OIB) from the Azores archipelago show incompatible element and Sr-Nd-Hf-Pb isotopic heterogeneity both among different islands and within individual islands. This heterogeneity has commonly been attributed to the presence of a mantle plume delivering diverse recycled materials--including terrigenous sediments, metasomatized subcontinental lithosphere, and oceanic crust--to the melting region beneath the Azores (Turner et al., 1997; Widom and Shirey, 1996; Beier et al., 2007). Despite an abundance of datasets including major and trace element and Sr, Nd, Hf, and Pb isotopic compositions, the origin of elemental and isotopic heterogeneity in the Azores remains vigorously debated. We report new highly siderophile element (HSE: Os, Ir, Pd, Pt, Ru, Re) abundance data alongside major and trace element abundance and Nd-Hf-Os-Pb isotope data for a suite of high MgO (8-17 wt%) lavas from the islands of Sao Miguel, Pico, Faial, and Terceira. These lavas span most of the range of incompatible trace element and Nd-Hf-Pb isotopic heterogeneity observed for the Azores. Because HSEs are largely controlled by sulfide, they provide an alternative to the classic perspective of OIB petrogenesis derived from lithophile elements. The results show distinct fractionation patterns for HSEs from different islands at a similar range of MgO contents. Lavas from Pico and Faial have lower absolute HSE abundances (total HSE abundances ~0.001 × CI chondrite; Ir=0.014-0.133 ppb) and are generally more homogeneous than lavas from Terceira and Sao Miguel (total HSE = ~0.003 × CI chondrite; Ir=0.038-0.657 ppb)). Faial and Pico lavas (IrN* = 0.8×0.3, where IrN* = IrN/[(OsN+RuN)0.5] x 100) also commonly lack the positive relative enrichment in Ir observed in Terceira and Sao Miguel lavas (IrN* = 2.4 ×1.1). In contrast to previous studies of OIB in which HSEs are observed to positively correlate with MgO (e.g., Day, 2013), only Re correlates with MgO, as expected given its moderate incompatibility in silicate systems. All other HSEs show wide variability at similar MgO, broadly correlate with each other, yet do not correlate with Nd-Hf-Pb isotope compositions. Thus, we interpret HSE variability to reflect variations in mantle sulfide source composition and sulfide melting beneath different islands in the Azores hotspot.

Variation of renal function over time is associated with major bleeding in patients treated with direct oral anticoagulants for atrial fibrillation.

PubMed

Becattini, C; Giustozzi, M; Ranalli, M G; Bogliari, G; Cianella, F; Verso, M; Agnelli, G; Vedovati, M C

2018-05-01

Essential In patients on treatment with direct anticoagulants (DOACs) variation of renal function is common. The effect of variations of renal function over time on major bleeding is not well defined. Variation of renal function over time is an independent predictor of major bleeding. Identifying conditions associated with variation of renal function may increase safety of DOACs. Background Chronic kidney disease is a risk factor for major bleeding in patients with atrial fibrillation (AF) treated with warfarin. Objective To assess the effect of variations in renal function over time on the risk of major bleeding during treatment with direct oral anticoagulants (DOACs) in patients with non-valvular AF. Methods Consecutive AF patients were prospectively followed after they had received the first DOAC prescription. Estimated glomerular filtration rate (eGFR) was periodically assessed, and the incidence of major bleeding was recorded. A joint survival model was used to estimate the association between variation in eGFR and the risk of major bleeding. Results During a mean follow-up of 575 days, 44 major bleeds occurred in 449 patients (6.1% per patient-year). eGFR over time was inversely and independently associated with the risk of major bleeding; every 1 mL min -1 absolute decrease in eGFR was associated with a 2% increase in the risk of major bleeding (hazard ratio [HR] 1.02, 95% confidence interval [CI] 1.01-1.04). A similar effect of the variation in eGFR over time was observed on the risk of clinically relevant non-major bleeding (HR 1.02, 95% CI 1.01-1.03). Deterioration of renal function leading to a change in eGFR staging was associated with an increase in the risk of major bleeding (HR 2.43, 95% CI 1.33-4.45). Conclusions Variation in renal function over time is associated with the risk of major bleeding in AF patients treated with DOACs in real life. Identification of intervening clinical conditions associated with variation in renal function is essential to reduce the risk of major bleeding and to make DOAC treatment more safe. © 2018 International Society on Thrombosis and Haemostasis.

Genome-wide DNA methylation map of human neutrophils reveals widespread inter-individual epigenetic variation

PubMed Central

Chatterjee, Aniruddha; Stockwell, Peter A.; Rodger, Euan J.; Duncan, Elizabeth J.; Parry, Matthew F.; Weeks, Robert J.; Morison, Ian M.

2015-01-01

The extent of variation in DNA methylation patterns in healthy individuals is not yet well documented. Identification of inter-individual epigenetic variation is important for understanding phenotypic variation and disease susceptibility. Using neutrophils from a cohort of healthy individuals, we generated base-resolution DNA methylation maps to document inter-individual epigenetic variation. We identified 12851 autosomal inter-individual variably methylated fragments (iVMFs). Gene promoters were the least variable, whereas gene body and upstream regions showed higher variation in DNA methylation. The iVMFs were relatively enriched in repetitive elements compared to non-iVMFs, and were associated with genome regulation and chromatin function elements. Further, variably methylated genes were disproportionately associated with regulation of transcription, responsive function and signal transduction pathways. Transcriptome analysis indicates that iVMF methylation at differentially expressed exons has a positive correlation and local effect on the inclusion of that exon in the mRNA transcript. PMID:26612583

Variable-Threshold Threshold Elements,

DTIC Science & Technology

A threshold element is a mathematical model of certain types of logic gates and of a biological neuron. Much work has been done on the subject of... threshold elements with fixed thresholds; this study concerns itself with elements in which the threshold may be varied, variable- threshold threshold ...elements. Physical realizations include resistor-transistor elements, in which the threshold is simply a voltage. Variation of the threshold causes the

Micro-spatial variation of elemental distribution in estuarine sediment and their accumulation in mangroves of Indian Sundarban.

PubMed

Bakshi, Madhurima; Ram, S S; Ghosh, Somdeep; Chakraborty, Anindita; Sudarshan, M; Chaudhuri, Punarbasu

2017-05-01

This work describes the micro-spatial variation of elemental distribution in estuarine sediment and bioaccumulation of those elements in different mangrove species of the Indian Sundarbans. The potential ecological risk due to such elemental load on this mangrove-dominated habitat is also discussed. The concentrations of elements in mangrove leaves and sediments were determined using energy-dispersive X-ray fluorescence spectroscopy. Sediment quality and potential ecological risks were assessed from the calculated indices. Our data reflects higher concentration of elements, e.g., Al, K, Ca, Ti, V, Cr, Mn, Fe, Ni, Cu, Zn, and Pb, in the sediment, as compared to that reported by earlier workers. Biological concentration factors for K, Ca, Mn, Fe, Cu, and Zn in different mangroves indicated gradual elemental bioaccumulation in leaf tissues (0.002-1.442). Significant variation was observed for elements, e.g., Ni, Mn, and Ca, in the sediments of all the sites, whereas in the plants, significant variation was found for P, S, Cl, K, Ca, Mn, Fe, Cu, and Zn. This was mostly due to the differences in uptake and accumulation potential of the plants. Various sediment quality indices suggested the surface sediments to be moderately contaminated and suffering from progressive deterioration. Cu, Cr, Zn, Mn, and Ni showed higher enrichment factors (0.658-1.469), contamination factors (1.02-2.7), and geo-accumulation index (0.043-0.846) values. The potential ecological risk index values considering Cu, Cr, Pb, and Zn were found to be within "low ecological risk" category (20.04-24.01). However, Cr and Ni in the Sundarban mangroves exceeded the effect range low and probable effect level limits. Strong correlation of Zn with Fe and K was observed, reflecting their similar transportation and accumulation process in both sediment and plant systems. The plant-sediment elemental correlation was found to be highly non-linear, suggesting role of some physiological and edaphic factors in the accumulation process. Overall, the study of micro-spatial distribution of elements can act as a useful tool for determining health of estuarine ecosystem.

Multiscale morphological filtering for analysis of noisy and complex images

NASA Astrophysics Data System (ADS)

Kher, A.; Mitra, S.

Images acquired with passive sensing techniques suffer from illumination variations and poor local contrasts that create major difficulties in interpretation and identification tasks. On the other hand, images acquired with active sensing techniques based on monochromatic illumination are degraded with speckle noise. Mathematical morphology offers elegant techniques to handle a wide range of image degradation problems. Unlike linear filters, morphological filters do not blur the edges and hence maintain higher image resolution. Their rich mathematical framework facilitates the design and analysis of these filters as well as their hardware implementation. Morphological filters are easier to implement and are more cost effective and efficient than several conventional linear filters. Morphological filters to remove speckle noise while maintaining high resolution and preserving thin image regions that are particularly vulnerable to speckle noise were developed and applied to SAR imagery. These filters used combination of linear (one-dimensional) structuring elements in different (typically four) orientations. Although this approach preserves more details than the simple morphological filters using two-dimensional structuring elements, the limited orientations of one-dimensional elements approximate the fine details of the region boundaries. A more robust filter designed recently overcomes the limitation of the fixed orientations. This filter uses a combination of concave and convex structuring elements. Morphological operators are also useful in extracting features from visible and infrared imagery. A multiresolution image pyramid obtained with successive filtering and a subsampling process aids in the removal of the illumination variations and enhances local contrasts. A morphology-based interpolation scheme was also introduced to reduce intensity discontinuities created in any morphological filtering task. The generality of morphological filtering techniques in extracting information from a wide variety of images obtained with active and passive sensing techniques is discussed. Such techniques are particularly useful in obtaining more information from fusion of complex images by different sensors such as SAR, visible, and infrared.

Multiscale Morphological Filtering for Analysis of Noisy and Complex Images

NASA Technical Reports Server (NTRS)

Kher, A.; Mitra, S.

1993-01-01

Images acquired with passive sensing techniques suffer from illumination variations and poor local contrasts that create major difficulties in interpretation and identification tasks. On the other hand, images acquired with active sensing techniques based on monochromatic illumination are degraded with speckle noise. Mathematical morphology offers elegant techniques to handle a wide range of image degradation problems. Unlike linear filters, morphological filters do not blur the edges and hence maintain higher image resolution. Their rich mathematical framework facilitates the design and analysis of these filters as well as their hardware implementation. Morphological filters are easier to implement and are more cost effective and efficient than several conventional linear filters. Morphological filters to remove speckle noise while maintaining high resolution and preserving thin image regions that are particularly vulnerable to speckle noise were developed and applied to SAR imagery. These filters used combination of linear (one-dimensional) structuring elements in different (typically four) orientations. Although this approach preserves more details than the simple morphological filters using two-dimensional structuring elements, the limited orientations of one-dimensional elements approximate the fine details of the region boundaries. A more robust filter designed recently overcomes the limitation of the fixed orientations. This filter uses a combination of concave and convex structuring elements. Morphological operators are also useful in extracting features from visible and infrared imagery. A multiresolution image pyramid obtained with successive filtering and a subsampling process aids in the removal of the illumination variations and enhances local contrasts. A morphology-based interpolation scheme was also introduced to reduce intensity discontinuities created in any morphological filtering task. The generality of morphological filtering techniques in extracting information from a wide variety of images obtained with active and passive sensing techniques is discussed. Such techniques are particularly useful in obtaining more information from fusion of complex images by different sensors such as SAR, visible, and infrared.

Human population-specific gene expression and transcriptional network modification with polymorphic transposable elements

PubMed Central

Wang, Lu; Mariño-Ramírez, Leonardo

2017-01-01

Abstract Transposable element (TE) derived sequences are known to contribute to the regulation of the human genome. The majority of known TE-derived regulatory sequences correspond to relatively ancient insertions, which are fixed across human populations. The extent to which human genetic variation caused by recent TE activity leads to regulatory polymorphisms among populations has yet to be thoroughly explored. In this study, we searched for associations between polymorphic TE (polyTE) loci and human gene expression levels using an expression quantitative trait loci (eQTL) approach. We compared locus-specific polyTE insertion genotypes to B cell gene expression levels among 445 individuals from 5 human populations. Numerous human polyTE loci correspond to both cis and trans eQTL, and their regulatory effects are directly related to cell type-specific function in the immune system. PolyTE loci are associated with differences in expression between European and African population groups, and a single polyTE loci is indirectly associated with the expression of numerous genes via the regulation of the B cell-specific transcription factor PAX5. The polyTE-gene expression associations we found indicate that human TE genetic variation can have important phenotypic consequences. Our results reveal that TE-eQTL are involved in population-specific gene regulation as well as transcriptional network modification. PMID:27998931

Extensive Natural Intraspecific Variation in Stoichiometric (C:N:P) Composition in Two Terrestrial Insect Species

PubMed Central

Bertram, S. M.; Bowen, M.; Kyle, M.; Schade, J. D.

2008-01-01

Heterotrophic organisms must obtain essential elements in sufficient quantities from their food. Because plants naturally exhibit extensive variation in their elemental content, it is important to quantify the within-species stoichiometric variation of consumers. If extensive stoichiometric variation exists, it may help explain consumer variation in life-history strategy and fitness. To date, however, research on stoichiometric variation has focused on interspecific differences and assumed minimal intraspecific differences. Here this assumption is tested. Natural variation is quantified in body stoichiometry of two terrestrial insects: the generalist field cricket, Gryllus texensis Cade and Otte (Orthoptera: Gryllidae) and a specialist curculionid weevil, Sabinia setosa (Le Conte) (Coleoptera: Curculionidae). Both species exhibited extensive intraspecific stoichiometric variation. Cricket body nitrogen content ranged from 8–12% and there was a four-fold difference in body phosphorus content, ranging from 0.32–1.27%. Body size explained half this stoichiometric variation, with larger individuals containing less nitrogen and phosphorus. Weevils exhibited an almost three-fold difference in body phosphorus content, ranging from 0.38–0.97%. Overall, the variation observed within each of these species is comparable to the variation previously observed across almost all terrestrial insect species. PMID:20298114

Trace-element composition of Chicxulub crater melt rock, K/T tektites and Yucatan basement

NASA Technical Reports Server (NTRS)

Hildebrand, A. R.; Gregoire, D. C.; Attrep, M., Jr.; Claeys, P.; Thompson, C. M.; Boynton, W. V.

1993-01-01

The Cretaceous/Tertiary (K/T) boundary Chicxulub impact is the best preserved large impact in the geologic record. The Chicxulub crater has been buried with no apparent erosion of its intracrater deposits, and its ejecta blanket is known and is well preserved at hundreds of localities globally. Although most of the molten material ejected from the crater has been largely altered, a few localities still preserve tektite glass. Availability of intra- and extracrater impact products as well as plausible matches to the targeted rocks allows the comparison of compositions of the different classes of impact products to those of the impacted lithologies. Determination of trace-element compositions of the K/T tektites, Chicxulub melt rock, and the targeted Yucatan silicate basement and carbonate/evaporite lithologies have been made using instrumental neutron activation analysis (INAA) and inductively coupled plasma mass spectrometry (ICP-MS). Some sample splits were studied with both techniques to ensure that inter-laboratory variation was not significant or could be corrected. The concentration of a few major and minor elements was also checked against microprobe results. Radiochemical neutron activation analysis (RNAA) was used to determine Ir abundances in some samples.

Anionic Pt in Silicate Melts at Low Oxygen Fugacity: Speciation, Partitioning and Implications for Core Formation Processes on Asteroids

NASA Technical Reports Server (NTRS)

Medard, E.; Martin, A. M.; Righter, K.; Malouta, A.; Lee, C.-T.

2017-01-01

Most siderophile element concentrations in planetary mantles can be explained by metal/ silicate equilibration at high temperature and pressure during core formation. Highly siderophile elements (HSE = Au, Re, and the Pt-group elements), however, usually have higher mantle abundances than predicted by partitioning models, suggesting that their concentrations have been set by late accretion of material that did not equilibrate with the core. The partitioning of HSE at the low oxygen fugacities relevant for core formation is however poorly constrained due to the lack of sufficient experimental constraints to describe the variations of partitioning with key variables like temperature, pressure, and oxygen fugacity. To better understand the relative roles of metal/silicate partitioning and late accretion, we performed a self-consistent set of experiments that parameterizes the influence of oxygen fugacity, temperature and melt composition on the partitioning of Pt, one of the HSE, between metal and silicate melts. The major outcome of this project is the fact that Pt dissolves in an anionic form in silicate melts, causing a dependence of partitioning on oxygen fugacity opposite to that reported in previous studies.

Use of diluted urine for cultivation of Chlorella vulgaris.

PubMed

Jaatinen, Sanna; Lakaniemi, Aino-Maija; Rintala, Jukka

2016-01-01

Our aim was to study the biomass growth of microalga Chlorella vulgaris using diluted human urine as a sole nutrient source. Batch cultivations (21 days) were conducted in five different urine dilutions (1:25-1:300), in 1:100-diluted urine as such and with added trace elements, and as a reference, in artificial growth medium. The highest biomass density was obtained in 1:100-diluted urine with and without additional trace elements (0.73 and 0.60 g L(-1), respectively). Similar biomass growth trends and densities were obtained with 1:25- and 1:300-diluted urine (0.52 vs. 0.48 gVSS L(-1)) indicating that urine at dilution 1:25 can be used to cultivate microalgal based biomass. Interestingly, even 1:300-diluted urine contained sufficiently nutrients and trace elements to support biomass growth. Biomass production was similar despite pH-variation from < 5 to 9 in different incubations indicating robustness of the biomass growth. Ammonium formation did not inhibit overall biomass growth. At the beginning of cultivation, the majority of the biomass consisted of living algal cells, while towards the end, their share decreased and the estimated share of bacteria and cell debris increased.

The effect of miniaturized body size on skeletal morphology in frogs.

PubMed

Yeh, Jennifer

2002-03-01

Miniaturization has evolved numerous times and reached impressive extremes in the Anura. I compared the skeletons of miniature frog species to those of closely related larger species to assess patterns of morphological change, sampling 129 species from 12 families. Two types of morphological data were examined: (1) qualitative data on bone presence and absence; and (2) thin-plate spline morphometric descriptions of skull structure and bone shape. Phylogenetic comparative methods were used to address the shared history of species. Miniature anurans were more likely to lose skull bones and phalangeal elements of the limbs. Their skulls also showed consistent differences compared to those of their larger relatives, including relatively larger braincases and sensory capsules, verticalization of lateral elements, rostral displacement of the jaw joint, and reduction of some skull elements. These features are explained by functional constraints and by paedomorphosis. Variation among lineages in the morphological response to miniaturization was also explored. Certain lineages appear to be unusually resistant to the morphological trends that characterize miniature frogs as a whole. This study represents the first large-scale examination of morphology and miniaturization across a major, diverse group of organisms conducted in a phylogenetic framework and with statistical rigor.

Opportunistic pathogens and elements of the resistome that are common in bottled mineral water support the need for continuous surveillance.

PubMed

Falcone-Dias, Maria Fernanda; Centrón, Daniela; Pavan, Fernando; Moura, Adriana Candido da Silva; Naveca, Felipe Gomes; de Souza, Victor Costa; Farache Filho, Adalberto; Leite, Clarice Queico Fujimura

2015-01-01

Several differences concerning bacterial species, opportunistic pathogens, elements of the resistome as well as variations concerning the CFU/mL counts were identified in some of the five most marketed bottled mineral water from Araraquara city, São Paulo, Brazil. Two out of five brands tested were confirmed as potential source of opportunistic pathogens, including Mycobacterium gordonae, Ralstonia picketti and Burkholderia cepacia complex (Bcc). A total of one hundred and six isolates were recovered from four of these bottled mineral water brands. Betaproteobacteria was predominant followed by Alphaproteobacteria, Gammaproteobacteria and Firmicutes. Ninety percent of the bacteria isolated demonstrated resistance to seventeen of the nineteen antimicrobials tested. These antimicrobials included eight different classes, including 3rd and 4th generation cephalosporins, carbapenems and fluoroquinolones. Multidrug resistant bacteria were detected for fifty-nine percent of isolates in three water brands at counts up to 103 CFU/ml. Of major concern, the two bottled mineral water harboring opportunistic pathogens were also source of elements of the resistome that could be directly transferred to humans. All these differences found among brands highlight the need for continuous bacteriological surveillance of bottled mineral water.

Opportunistic Pathogens and Elements of the Resistome that Are Common in Bottled Mineral Water Support the Need for Continuous Surveillance

PubMed Central

Falcone-Dias, Maria Fernanda; Centrón, Daniela; Pavan, Fernando; Moura, Adriana Candido da Silva; Naveca, Felipe Gomes; de Souza, Victor Costa; Farache Filho, Adalberto; Leite, Clarice Queico Fujimura

2015-01-01

Several differences concerning bacterial species, opportunistic pathogens, elements of the resistome as well as variations concerning the CFU/mL counts were identified in some of the five most marketed bottled mineral water from Araraquara city, São Paulo, Brazil. Two out of five brands tested were confirmed as potential source of opportunistic pathogens, including Mycobacterium gordonae, Ralstonia picketti and Burkholderia cepacia complex (Bcc). A total of one hundred and six isolates were recovered from four of these bottled mineral water brands. Betaproteobacteria was predominant followed by Alphaproteobacteria, Gammaproteobacteria and Firmicutes. Ninety percent of the bacteria isolated demonstrated resistance to seventeen of the nineteen antimicrobials tested. These antimicrobials included eight different classes, including 3rd and 4th generation cephalosporins, carbapenems and fluoroquinolones. Multidrug resistant bacteria were detected for fifty-nine percent of isolates in three water brands at counts up to 103 CFU/ml. Of major concern, the two bottled mineral water harboring opportunistic pathogens were also source of elements of the resistome that could be directly transferred to humans. All these differences found among brands highlight the need for continuous bacteriological surveillance of bottled mineral water. PMID:25803794

Petrographic and geochemical contrasts and environmentally significant trace elements in marine-influenced coal seams, Yanzhou mining area, China

USGS Publications Warehouse

Liu, Gaisheng; Yang, P.; Peng, Z.; Chou, C.-L.

2004-01-01

The Yanzhou mining area in west Shandong Province, China contains coals of Permian and Carboniferous age. The 31 and 32 seams of the Permian Shanxi Formation and seams 6, 15-17 of the Carboniferous Taiyuan Formation were analyzed for coal petrology, mineralogy and geochemical parameters. The parameters indicate that the coal is high volatile bituminous in rank. The coal is characterized by high vitrinite and low to medium inertinite and liptinite contents. These properties may be related to evolution of the coal forming environment from more reducing conditions in a marine influenced lower delta plain environment for the early Taiyuan coals to more oxidizing paleoenvironments in an upper delta plain for the upper Shanxi coal seams. The major mineral phases present in the coal are quartz, kaolinite, pyrite and calcite. Sulfur is one of the hazardous elements in coal. The major forms of sulfur in coal are pyritic, organic and sulfate sulfur. Pyritic and organic sulfur generally account for the bulk of the sulfur in coal. Elemental sulfur also occurs in coal, but only in trace to minor amounts. In this paper, the distribution and concentration of sulfur in the Yanzhou mining district are analyzed, and the forms of sulfur are studied. The sulfur content of the Taiyuan coal seams is considerably higher than that of the Shanxi coals. Organic sulfur content is positively correlated to total and pyritic sulfur. The vertical variation of Cu, Zn, Pb, As, Th, U and sulfur contents in coal seam 3 of the Shanxi Formation in the Xinglongzhuang mine show that all these trace elements, with the exception of Th, are enriched in the top and bottom plies of the seam, and that their concentrations are also relatively high in the dirt bands within the seam. The pyritic sulfur is positively correlated with total sulfur, and both are enriched in the top, bottom and parting plies of the seam. The concentrations of the trace elements are closely related to sulfur and ash contents. Most of the trace elements are correlated with the ash content, and may be associated with the mineral matter in the coal. ?? 2004 Elsevier Ltd. All rights reserved.

Human Variation in Short Regions Predisposed to Deep Evolutionary Conservation

PubMed Central

Loots, Gabriela G.; Ovcharenko, Ivan

2010-01-01

The landscape of the human genome consists of millions of short islands of conservation that are 100% conserved across multiple vertebrate genomes (termed “bricks”), the majority of which are located in noncoding regions. Several hundred thousand bricks are deeply conserved reaching the genomes of amphibians and fish. Deep phylogenetic conservation of noncoding DNA has been reported to be strongly associated with the presence of gene regulatory elements, introducing bricks as a proxy to the functional noncoding landscape of the human genome. Here, we report a significant overrepresentation of bricks in the promoters of transcription factors and developmental genes, where the high level of phylogenetic conservation correlates with an increase in brick overrepresentation. We also found that the presence of a brick dictates a predisposition to evolutionary constraint, with only 0.7% of the amniota brick central nucleotides being diverged within the primate lineage—an 11-fold reduction in the divergence rate compared with random expectation. Human single-nucleotide polymorphism (SNP) data explains only 3% of primate-specific variation in amniota bricks, thus arguing for a widespread fixation of brick mutations within the primate lineage and prior to human radiation. This variation, in turn, might have been utilized as a driving force for primate- and hominoid-specific adaptation. We also discovered a pronounced deviation from the evolutionary predisposition in the human lineage, with over 20-fold increase in the substitution rate at brick SNP sites over expected values. In addition, contrary to typical brick mutations, brick variation commonly encountered in the human population displays limited, if any, signatures of negative selection as measured by the minor allele frequency and population differentiation (F-statistical measure) measures. These observations argue for the plasticity of gene regulatory mechanisms in vertebrates—with evidence of strong purifying selection acting on the gene regulatory landscape of the human genome, where widespread advantageous mutations in putative regulatory elements are likely utilized in functional diversification and adaptation of species. PMID:20093432

Relative effect of temperature and pH on diel cycling of dissolved trace elements in prickly pear creek, Montana

USGS Publications Warehouse

Jones, Clain A.; Nimick, D.A.; McCleskey, R. Blaine

2004-01-01

Diel (24 hr) cycles in dissolved metal and As concentrations have been documented in many northern Rocky Mountain streams in the U.S.A. The cause(s) of the cycles are unknown, although temperature- and pH-dependent sorption reactions have been cited as likely causes. A light/dark experiment was conducted to isolate temperature and pH as variables affecting diel metal cycles in Prickly Pear Creek, Montana. Light and dark chambers containing sediment and a strand of macrophyte were placed in the stream to simulate instream temperature oscillations. Photosynthesis-induced pH changes were allowed to proceed in the light chambers while photosynthesis was prevented in the dark chambers. Water samples were collected periodically for 22 hr in late July 2001 from all chambers and the stream. In the stream, dissolved Zn concentrations increased by 300% from late afternoon to early morning, while dissolved As concentrations exhibited the opposite pattern, increasing 33% between early morning and late afternoon. Zn and As concentrations in the light chambers showed similar, though less pronounced, diel variations. Conversely, Zn and As concentrations in the dark chambers had no obvious diel variation, indicating that light, or light-induced reactions, caused the variation. Temperature oscillations were nearly identical between light and dark chambers, strongly suggesting that temperature was not controlling the diel variations. As expected, pH was negatively correlated (P < 0.01) with dissolved Zn concentrations and positively correlated with dissolved As concentrations in both the light and dark chambers. From these experiments, photosynthesis-induced pH changes were determined to be the major cause of the diel dissolved Zn and As cycles in Prickly Pear Creek. Further research is necessary in other streams to verify that this finding is consistent among streams having large differences in trace-element concentrations and mineralogy of channel substrate. ?? 2004 Kluwer Academic Publishers.

Chemical and oxygen isotope zonings in garnet from subducted continental crust record mineral replacement and metasomatism

NASA Astrophysics Data System (ADS)

Vho, Alice; Rubatto, Daniela; Regis, Daniele; Baumgartner, Lukas; Bouvier, Anne-Sophie

2017-04-01

Garnet is a key mineral in metamorphic petrology for constraining pressure, temperature and time paths. Garnet can preserve multiple growth stages due to its wide P-T stability field and the relatively slow diffusivity for major and trace elements at sub-solidus temperatures. Pressure-temperature-time-fluid paths of the host rock may be reconstructed by combining metamorphic petrology with microscale trace element and oxygen isotope measurements in garnet. Subduction zones represent relevant geological settings for geochemical investigation of element exchanges during aqueous fluid-rock interactions. The Sesia Zone consists of a complex continental sequence containing a variety of mono-metamorphic and poly-metamorphic lithologies such as metagranitoids, sediments and mafic boudins. The precursor Varisican-Permian amphibolite-facies basement (6-9 kbar 650-850°C; Lardeaux and Spalla, 1991; Robyr et al., 2013) experienced high pressure metamorphism (15-22 kbar 500-550°C; Regis, et al. 2014; Robyr et al., 2013) during Alpine subduction. In different lithologies of the Internal Complex (Eclogitic Micaschist Complex), including metabasites from the Ivozio Complex, Ti-rich metasediments from Val Malone and pre-Alpine Mn-quartzites associated to metagabbros from Cima Bonze, garnet is abundant and shows a variety of complex textures that cannot be reconciled with typical growth zoning, but indicate resorption and replacement processes and possible metasomatism. In-situ, microscale oxygen isotopes analysis of garnet zones was performed by ion microprobe with the SwissSIMS Cameca IMS 1280-HR at University of Lausanne and SHRIMP-SI at the Australian National University. Each sample has a distinct δ18O composition, and the δ18O values show different degrees of variation between domains. Homogeneously low values of < 5‰ are measured in the garnets from the Ivozio Complex metagabbro. Intragrain variations of up to 3.5‰ in the porphyroblasts from Val Malone metasediments, and variations up to 6.5‰ in Cima Bonze garnets suggest significant metasomatic replacement from external fluids. The combination of oxygen isotopes, trace element geochemistry and P-T modelling allows reconstructing the major stages of metasomatism, as well as identifying the nature of the fluid interacting with the rock at each metamorphic stage. REFERENCES Lardeaux, J. M., & Spalla, M. I. (1991). From granulites to eclogites in the Sesia zone (Italian Western Alps): A record of the opening and closure of the Piedmont ocean. Journal of Metamorphic Geology, 9, 35-59. Regis, D., Rubatto, D., Darling, J., Cenki-Tok, B., Zucali, M., & Engi, M. (2014). Multiple metamorphic stages within an eclogite-facies terrane (Sesia Zone, Western Alps) revealed by Th-U-Pb petrochronology. Journal of Petrology, 55(7), 1429-1456. Robyr, M., Darbellay, B., & Baumgartner, L. P. (2014). Matrix-dependent garnet growth in polymetamorphic rocks of the Sesia zone, Italian Alps. Journal of Metamorphic Geology, 32(1), 3-24.

The Changing Nature of the Hawaiian Hotspot in the Late Cretaceous-Early Tertiary: Evidence From Helium Isotopes and Melt Inclusion Compositions

NASA Astrophysics Data System (ADS)

Keller, R.; Graham, D.; Duncan, R.; Regelous, M.

2002-12-01

Ocean Drilling Program Leg 197 recovered basaltic basement from three of the Late Cretaceous-Paleogene Emperor seamounts: Detroit (Sites 1203 and 1204), Nintoku (Site 1205), and Koko (Site 1206) seamounts. The depths of penetration into basement achieved by this drilling (140-450 m), the range of rock types recovered (hawaiites, alkalic basalts, and tholeiitic basalts), and the age range (48-76 Ma) makes this one of the most comprehensive collections of the volcanic products of the Hawaiian hotspot available, and opens up new opportunities to study the temporal evolution of the Hawaiian hotspot during the Late Cretaceous and early Tertiary. Previous studies of the chemical evolution of the Hawaiian hotspot (Lanphere et al., 1980; Keller et al., 2000) found significant temporal variations. For example, Sr isotopic ratios of the tholeiitic basalts remain fairly constant along the Hawaiian Islands/Ridge between Kilauea volcano on Hawaii and the Hawaiian-Emperor bend, but then decrease steadily northward along the Emperor seamounts. Trace element compositions (especially the rare earth element patterns) also show limited variations along the Hawaiian Islands/Ridge, but change toward more depleted values northward along the Emperor seamounts. The trend to more MORB-like compositions back in time was attributed to a decrease in distance between the hotspot and the nearest spreading center, although a more comprehensive study suggests that variations in lithospheric thickness also caused changes in the composition of the plume melts (Regelous et al., 2002). We will complement these previous studies and the ongoing work of the other Leg 197 scientists by studying two aspects of the Emperor seamount basalts: helium isotopes and melt inclusion compositions. We will measure the helium isotopic ratios of selected olivine separates from three of the Leg 197 drill sites and from DSDP Site 433 on Suiko seamount (65 Ma) to determine if the composition of the Hawaiian "plume signal" has changed over time. We will also analyze the major and trace element compositions of melt inclusions that were isolated from shallow-level magma mixing and crystal fractionation processes to determine how much of the geochemical variations observed in the Emperor basalts are due to changes in melting processes. All of the drill sites recovered olivine and plagioclase phenocrysts suitable for melt inclusion studies.

Chemistry of the subalkalic silicic obsidians

USGS Publications Warehouse

MacDonald, Ray; Smith, Robert L.; Thomas, John E.

1992-01-01

Nonhydrated obsidians are quenched magmatic liquids that record in their chemical compositions details of the tectonic environment of formation and of the differentiation mechanisms that affected their subsequent evolution. This study attempts to analyze, in terms of geologic processes, the compositional variations in the subalkalic silicic obsidians (Si02≥70 percent by weight, molecular (Na2O+K20)>Al2O3). New major- and trace-element determinations of 241 samples and a compilation of 130 published major-element analyses are reported and interpreted. Obsidians from five different tectonic settings are recognized: (1) primitive island arcs, (2) mature island arcs, (3) continental margins, (4) continental interiors, and (5) oceanic extensional zones. Tectonomagmatic discrimination between these groups is successfully made on Nb-Ta, Nb-FeOt and Th-Hf-Ta plots, and compositional ranges and averages for each group are presented. The chemical differences between groups are related to the type of crust in which magmas were generated. With increasingly sialic (continental type) crust, the obsidians show overall enrichment in F, Be, Li, Mo, Nb, Rb, Sn, Ta, U, W, Zn, and the rare-earth elements, and depletion in Mg, Ca, Ba, Co, Sc, Sr, and Zr. They become more potassic, have higher Fe/Mg and F/Cl ratios, and lower Zr/Hf, Nb/Ta, and Th/U ratios. Higher values of total rare-earth elements are accompanied by light rare-earth-element enrichment and pronounced negative Eu anomalies. An attempt is made to link obsidian chemistry to genetic mechanlism. Two broad groups of rocks are distinguished: one generated where crystal-liquid processes dominated (CLPD types), which are the products of crustal anatexis, possibly under conditions of low halogen fugacity, ± crystal fractionation ± magma mixing; and a second group represented by rocks formed in the upper parts of large magma chambers by interplays of crystal fractionation, volatile transfer, magma mixing, and possibly various liquid-state differentiation mechanisms, or in other words a complex interaction of petrogenetic processes (CIPP types). Such rocks may also form by volatile-fluxed partial melting of the wallrocks, and subsequent mixing into the magma reservoir. Compositional ranges and averages for CLPD and CIPP obsidians are given. It is shown by analogy with well-documented, zoned ash-flow ruffs that obsidians fractionated by CIPP have very low Mg, P, Ba, and Sr contents, flat rare-earth-element patterns with extensive Eu anomalies, low K/Rb and Zr/Nb ratios, and relatively high Na2O/K2O ratios. There is, however, considerable compositional overlap between CLPD and CIPP obsidians. The effects of magma mixing, assimilation, and vapor-phase transport in producing compositional variations in the obsidians are briefly assessed. The geochemistry of the subalkalic silicic obsidians is described on an element-by-element basis, in order to provide a database for silicic magma compositions that will hopefully contribute to studies of granitic rocks. Attempts are also made to isolate the geochemical effects of tectonic environment and genetic mechanism for each element, by comparison with data from crystal-liquid equilibria-controlled systems, from ash-flow sheets zoned by CIPP, and from mixed-magma series. A final tabulation relates the complexities of obsidian geochemistry to all the tectonic and genetic variables.

Yarkovsky-Schach effect on space debris motion

NASA Astrophysics Data System (ADS)

Murawiecka, M.; Lemaitre, A.

2018-02-01

The Yarkovsky-Schach effect is a small perturbation affecting Earth satellites and space debris illuminated by the Sun. It was first applied to the orbit of LAGEOS satellites as an explanation of the residuals in orbital elements. In this work, we carry out several numerical integration tests taking into consideration various orbit and rotation parameters, in order to analyse this effect in a broader context. The semi-major axis variations remain small and depend on the spin axis attitude with respect to the Sun. We show that the force amplitude is maximised for orbits inclined with i ≈ 20-30°. We also observe the influence on other orbital elements, notably on the orbit inclination. However, these effects are clearly observed only on long timescales; in our simulations, we propagated the orbits for 200 y. The Yarkovsky-Schach effect is thus confirmed to have a minuscule magnitude. It should be taken into account in studies requiring high-precision orbit determination, or on expanded timescales.

Open system magnetic evolution of the taos plateau volcanic field, Northern New Mexico. I - The petrology and geochemistry of the servilleta basalt

NASA Technical Reports Server (NTRS)

Dungan, M. A.; Lindstrom, M. M.; Mcmillan, N. J.; Moorbath, S.; Hoefs, J.

1986-01-01

MULTIFIT, an embodiment of the conceptual structure needed in modeling multisource and multiprocess magmatic systems, is described. This program, which uses familiar materials balance methodology and the equilibrium form of the Rayleigh equations, links evolutionary arrays, which is turn collectively relate the starting and final compositions of a given magmatic system. Moreover, MULTIFIT incorporates variations within major element data arrays; the linkage between them can be tested using an extension of the least squares algorithm, which selects the best branch point according to the minimum-sum-of-squared-residuals criterion. Advantages and disadvantages of the materials balance approach used in this program are discussed, an example is provided, and equations utilized by MULTIFIT are summarized. While MULTIFIT may not be the best approach for poorly constrained models involving partial melting for complex mixing, it may ultimately prove useful for ascertaining trace element partition coefficients in magnetic systems.

Urban air-quality assessment and source apportionment studies for Bhubaneshwar, Odisha

NASA Astrophysics Data System (ADS)

Mahapatra, Parth Sarathi; Ray, Sanak; Das, Namrata; Mohanty, Ayusman; Ramulu, T. S.; Das, Trupti; Chaudhury, G. Roy; Das, S. N.

2013-04-01

Acid- and water-soluble component of suspended particulate matter was studied from January 2009 to December 2009 at Bhubaneshwar, an urban coastal location of eastern India, by high-volume sampler, environmental dust monitor using GRIMM®, and scanning electron microscope and energy dispersive X-ray spectrometer. The water-soluble components accounted for 30-45 % of the total suspended particulate matter, and the major elements were observed to be ammonium and nitrate as the cationic and anionic species, respectively. The acid-soluble component like copper, nickel, cobalt, iron, and lead accounted for 5-15 % of the total particulate matter concentration. The composition of particulate matter shows a clear seasonal variation in relation to wind speed, wind direction, and trajectories of the air mass movement. The GRIMM spectrometer analysis shows higher concentration of fine particulate matter. Source apportionment and enrichment factor analysis indicated that except sodium and chloride, all other elements have emerged from different sources such as crustal as well as anthropogenic.

Peat-fire-related air pollution in Central Kalimantan, Indonesia.

PubMed

Hayasaka, Hiroshi; Noguchi, Izumi; Putra, Erianto Indra; Yulianti, Nina; Vadrevu, Krishna

2014-12-01

The past decade marked record high air pollution episodes in Indonesia. In this study, we specifically focus on vegetation fires in Palangkaraya located near a Mega Rice Project area in Indonesia. We analyzed various gaseous air pollution data such as particulate matter (PM10), SO2, CO, O3, and NO2 study region. We also conducted elemental analysis at two different sites. Results from 2001 to 2010 suggested the longest hazardous air pollution episode during 2002 lasting about 80 days from mid-August to late-October. Maximum peak concentrations of PM10, SO2, CO, and O3 were also observed during 2002 and their values reached 1905, 85.8, 38.3, and 1003×10(-6) gm(-3) respectively. Elemental analysis showed significant increase in concentrations during 2011 and 2010. Satellite retrieved fires and weather data could explain most of the temporal variations. Our results highlight peat fires as a major contributor of photochemical smog and air pollution in the region. Copyright © 2014 Elsevier Ltd. All rights reserved.

Interannual heavy element and nutrient concentration trends in the top sediments of Venice Lagoon (Italy).

PubMed

Masiol, Mauro; Facca, Chiara; Visin, Flavia; Sfriso, Adriano; Pavoni, Bruno

2014-12-15

The elemental composition of surficial sediments of Venice Lagoon (Italy) in 1987, 1993, 1998 and 2003 were investigated. Zn and Cr concentrations resulted in higher than background levels, but only Cd and Hg were higher than legal quality standards (Italian Decree 2010/260 and Water Framework Directive 2000/60/EC). Contaminants with similar spatial distribution are sorted into three groups by means of correlation analysis: (i) As, Co, Cd, Cu, Fe, Pb, Zn; (ii) Ni, Cr; (iii) Hg. Interannual concentrations are compared by applying a factor analysis to the matrix of differences between subsequent samplings. A general decrease of heavy metal levels is observed from 1987 to 1993, whereas particularly high concentrations of Ni and Cr are recorded in 1998 as a consequence of intense clam fishing, subsequently mitigated by better prevention of illegal harvesting. Due to the major role played by anthropogenic sediment resuspension, bathymetric variations are also considered. Copyright © 2014 Elsevier Ltd. All rights reserved.

New Variational Formulations of Hybrid Stress Elements

NASA Technical Reports Server (NTRS)

Pian, T. H. H.; Sumihara, K.; Kang, D.

1984-01-01

In the variational formulations of finite elements by the Hu-Washizu and Hellinger-Reissner principles the stress equilibrium condition is maintained by the inclusion of internal displacements which function as the Lagrange multipliers for the constraints. These versions permit the use of natural coordinates and the relaxation of the equilibrium conditions and render considerable improvements in the assumed stress hybrid elements. These include the derivation of invariant hybrid elements which possess the ideal qualities such as minimum sensitivity to geometric distortions, minimum number of independent stress parameters, rank sufficient, and ability to represent constant strain states and bending moments. Another application is the formulation of semiLoof thin shell elements which can yield excellent results for many severe test cases because the rigid body nodes, the momentless membrane strains, and the inextensional bending modes are all represented.

Composition of plume-influenced mid-ocean ridge lavas and glasses from the Mid-Atlantic Ridge, East Pacific Rise, Galápagos Spreading Center, and Gulf of Aden

NASA Astrophysics Data System (ADS)

Kelley, Katherine A.; Kingsley, Richard; Schilling, Jean-Guy

2013-01-01

The global mid-ocean ridge system is peppered with localities where mantle plumes impinge on oceanic spreading centers. Here, we present new, high resolution and high precision data for 40 trace elements in 573 samples of variably plume-influenced mid-ocean ridge basalts from the Mid-Atlantic ridge, the Easter Microplate and Salas y Gomez seamounts, the Galápagos spreading center, and the Gulf of Aden, in addition to previously unpublished major element and isotopic data for these regions. Included in the data set are the unconventional trace elements Mo, Cd, Sn, Sb, W, and Tl, which are not commonly reported by most geochemical studies. We show variations in the ratios Mo/Ce, Cd/Dy, Sn/Sm, Sb/Ce, W/U, and Rb/Tl, which are expected not to fractionate significantly during melting or crystallization, as a function of proximity to plume-related features on these ridges. The Cd/Dy and Sn/Sm ratios show little variation with plume proximity, although higher Cd/Dy may signal increases in the role of garnet in the mantle source beneath some plumes. Globally, the Rb/Tl ratio closely approximates the La/SmN ratio, and thus provides a sensitive tracer of enriched mantle domains. The W/U ratio is not elevated at plume centers, but we find significant enrichments in W/U, and to a lesser extent the Mo/Ce and Sb/Ce ratios, at mid-ocean ridges proximal to plumes. Such enrichments may provide evidence of far-field entrainment of lower mantle material that has interacted with the core by deeply-rooted, upwelling mantle plumes.

Deep sea authigenic clays as a sink for seawater Mg through the Cenozoic

NASA Astrophysics Data System (ADS)

Dunlea, A. G.; Murray, R. W.; Ramos, D. S.; Higgins, J. A.

2016-12-01

The most enigmatic sink of many elements in the global ocean is the formation of authigenic aluminosilicates. Pelagic clays cover 40% of the seafloor and "reverse weathering" type reactions within this lithology have the potential to be a large sink of seawater Mg and affect carbon cycling in the ocean. We use pelagic clays from Integrated Ocean Drilling Program Expedition 329 Site U1366 in the South Pacific Gyre to track authigenic aluminosilicates with two complementary methods: (1) Mg isotopic analyses, and (2) bulk sediment geochemistry with provenance modeling. Mg isotopic analyses of the bulk, unleached clay samples reveal isotopic values significantly heavier than average continental crust (δ26Mg = -0.1 to -0.3%o) indicating significant authigenic uptake. The bulk sediment geochemistry (i.e., major, trace, rare earth element concentrations) and multivariate statistical models of provenance determine the mass fraction of six different sediment sources that mixed to create the sediments: Fe/Mn-oxyhydroxides, apatite, excess Si, dust, and two altered volcanic ashes. A significant correlation between the mass fraction of one of the specific altered ash end-member and the δ26Mg signature allows us to characterize and track the abundance of the authigenic aluminosilicate component downcore. Trends in the provenance models suggest that the elements that compose the authigenic aluminosilicates may originate from volcanic ash, biogenic Si, and/or hydrothermal plume deposits. We examine variations in the spatial and temporal contributions of each of these sources and assess how these variations may have affected the amount of Mg authigenically consumed by deep sea authigenic clays through the Cenozoic. If the authigenic aluminosilicates are created by "reverse weathering" reactions, their formation also has important implications for carbon cycling in the global ocean.

Rapid Increase in Genome Size as a Consequence of Transposable Element Hyperactivity in Wood-White (Leptidea) Butterflies.

PubMed

Talla, Venkat; Suh, Alexander; Kalsoom, Faheema; Dinca, Vlad; Vila, Roger; Friberg, Magne; Wiklund, Christer; Backström, Niclas

2017-10-01

Characterizing and quantifying genome size variation among organisms and understanding if genome size evolves as a consequence of adaptive or stochastic processes have been long-standing goals in evolutionary biology. Here, we investigate genome size variation and association with transposable elements (TEs) across lepidopteran lineages using a novel genome assembly of the common wood-white (Leptidea sinapis) and population re-sequencing data from both L. sinapis and the closely related L. reali and L. juvernica together with 12 previously available lepidopteran genome assemblies. A phylogenetic analysis confirms established relationships among species, but identifies previously unknown intraspecific structure within Leptidea lineages. The genome assembly of L. sinapis is one of the largest of any lepidopteran taxon so far (643 Mb) and genome size is correlated with abundance of TEs, both in Lepidoptera in general and within Leptidea where L. juvernica from Kazakhstan has considerably larger genome size than any other Leptidea population. Specific TE subclasses have been active in different Lepidoptera lineages with a pronounced expansion of predominantly LINEs, DNA elements, and unclassified TEs in the Leptidea lineage after the split from other Pieridae. The rate of genome expansion in Leptidea in general has been in the range of four Mb/Million year (My), with an increase in a particular L. juvernica population to 72 Mb/My. The considerable differences in accumulation rates of specific TE classes in different lineages indicate that TE activity plays a major role in genome size evolution in butterflies and moths. © The Author 2017. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

Rare earth elements in the phosphatic-enriched sediment of the Peru shelf

USGS Publications Warehouse

Piper, D.Z.; Baedecker, P.A.; Crock, J.G.; Burnett, W.C.; Loebner, B.J.

1988-01-01

Apatite-enriched materials from the Peru shelf have been analyzed for their major oxide and rare earth element (REE) concentrations. The samples consist of (1) the fine fraction of sediment, mostly clay material, (2) phosphatic pellets and fish debris, which are dispersed throughout the fine-grained sediment, (3) tabular-shaped phosphatic crusts, which occur within the uppermost few centimeters of sediment, and (4) phosphatic nodules, which occur on the seafloor. The bulk REE concentrations of the concretions suggest that these elements are partitioned between the enclosed detrital material and the apatite fraction. Analysis of the fine-grained sediment with which the samples are associated suggested that this detrital fraction in the concretions should have shale REE values; the analysis of the fish debris suggested that the apatite fraction might have seawater values. The seawater contribution of REE's is negligible in the nodules and crust, in which the apatite occurs as a fine-grained interstitial cement. That is, the concentration of REE's and the REE patterns are predominantly a function of the amount of enclosed fine-grained sediment. By contrast, the REE pattern of the pelletal apatite suggests a seawater source and the absolute REE concentrations are relatively high. The REE P2O5 ratios of the apatite fraction of these samples thus vary from approximately zero (in the case of the crust and nodules) to as much as approximately 1.2 ?? 10-3 (in the case of the pellets). The range of this ratio suggests that rather subtle variations in the depositional environment might cause a significant variation in the REE content of this authigenic fraction of the sediment. Pelletal glauconite was also recovered from one sediment core. Its REE concentrations closely resemble those of the fish debris. ?? 1988.

Temporal geochemical evolution of Kilauea Volcano: Comparison of Hilina and Puna Basalt

NASA Astrophysics Data System (ADS)

Chen, C.-Y.; Frey, F. A.; Rhodes, J. M.; Eastern, R. M.

Temporal geochcmical variations in Hawaiian shield-building lavas provide important constraints on the origin and evolution of these lavas. We determined the major and trace element content, and Sr, Nd and Pb isotopic ratios of the oldest subaerially exposed lavas on Kilauea Volcano, i.e., the >25 Ka to perhaps 100 Ka, Hilina Basalt. Except for lower K2O and Rb abundances in Hilina lavas, the compositions of these prehistoric lavas overlap with historical Kilauea lavas. Although the studied Hilina lavas are not highly altered, the lower abundances of K2O and Rb may reflect post-eruptive alteration. Compared with historical Kilauea lavas, Hilina lavas have a similar range in Sr and Nd isotopic ratios, but they range to more radiogenic Pb isotopic ratios. The mantle source of Kilauea lavas is heterogeneous in isotopic ratios and perhaps in abundance ratios of some incompatible elements, but there is no evidence for systematic long-term geochemical variations in the source of Kilauea lavas. None of the prehistoric Kilauea lavas have isotopic characteristics similar to those of subaerial Mauna Loa lavas. Apparently, the sources and ascent paths of lavas forming the adjacent Kilauea and Mauna Loa shields have largely remained distinct during subaerial growth of the Kilauea shield. Compared to lavas from other Hawaiian shields, Kilauea lavas range to relatively high 206Pb/204Pb and low 87Sr/86Sr. These isotopic ratios are correlated with trace element abundance ratios that involve Nb, e.g., Zr/Nb; some Hilina lavas define the upper range in 206Pb/204Pb (˜18.82), and they have low Zr/Nb (˜8). This "Kilauea component" which has isotopic characteristics similar to the FOZO component (e.g., Hauri et al., 1994a] is an intrinsic part of the Hawaiian plume.

The origin of volatile element depletion in early solar system material: Clues from Zn isotopes in chondrules

NASA Astrophysics Data System (ADS)

Pringle, Emily A.; Moynier, Frédéric; Beck, Pierre; Paniello, Randal; Hezel, Dominik C.

2017-06-01

Volatile lithophile elements are depleted in the different planetary materials to various degrees, but the origin of these depletions is still debated. Stable isotopes of moderately volatile elements such as Zn can be used to understand the origin of volatile element depletions. Samples with significant volatile element depletions, including the Moon and terrestrial tektites, display heavy Zn isotope compositions (i.e. enrichment of 66Zn vs. 64Zn), consistent with kinetic Zn isotope fractionation during evaporation. However, Luck et al. (2005) found a negative correlation between δ66Zn and 1/[Zn] between CI, CM, CO, and CV chondrites, opposite to what would be expected if evaporation caused the Zn abundance variations among chondrite groups. We have analyzed the Zn isotope composition of multiple samples of the major carbonaceous chondrite classes: CI (1), CM (4), CV (2), CO (4), CB (2), CH (2), CK (4), and CK/CR (1). The bulk chondrites define a negative correlation in a plot of δ66Zn vs 1/[Zn], confirming earlier results that Zn abundance variations among carbonaceous chondrites cannot be explained by evaporation. Exceptions are CB and CH chondrites, which display Zn systematics consistent with a collisional formation mechanism that created enrichment in heavy Zn isotopes relative to the trend defined by CI-CK. We further report Zn isotope analyses of chondrite components, including chondrules from Allende (CV3) and Mokoia (CV3), as well as an aliquot of Allende matrix. All chondrules are enriched in light Zn isotopes (∼500 ppm on 66Zn/64Zn) relative to the bulk, contrary to what would be expected if Zn were depleted during evaporation, on the other hand the matrix has a complementary heavy isotope composition. We report sequential leaching experiments in un-equilibrated ordinary chondrites, which show sulfides are isotopically heavy compared to silicates and the bulk meteorite by ca. +0.65 per mil on 66Zn/64Zn. We suggest isotopically heavy sulfides were removed from either chondrules or their precursors, thereby producing the light Zn isotope enrichments in chondrules.

Assessment of multiple sources of anthropogenic and natural chemical inputs to a morphologically complex basin, Lake Mead, USA

USGS Publications Warehouse

Rosen, Michael R.; Van Metre, P.C.

2010-01-01

Lakes with complex morphologies and with different geologic and land-use characteristics in their sub-watersheds could have large differences in natural and anthropogenic chemical inputs to sub-basins in the lake. Lake Mead in southern Nevada and northern Arizona, USA, is one such lake. To assess variations in chemical histories from 1935 to 1998 for major sub-basins of Lake Mead, four sediment cores were taken from three different parts of the reservoir (two from Las Vegas Bay and one from the Overton Arm and Virgin Basin) and analyzed for major and trace elements, radionuclides, and organic compounds. As expected, anthropogenic contaminant inputs are greatest to Las Vegas Bay reflecting inputs from the Las Vegas urban area, although concentrations are low compared to sediment quality guidelines and to other USA lakes. One exception to this pattern was higher Hg in the Virgin Basin core. The Virgin Basin core is located in the main body of the lake (Colorado River channel) and is influenced by the hydrology of the Colorado River, which changed greatly with completion of Glen Canyon Dam upstream in 1963. Major and trace elements in the core show pronounced shifts in the early 1960s and, in many cases, gradually return to concentrations more typical of pre-1960s by the 1980s and 1990s, after the filling of Lake Powell. The Overton Arm is the sub-basin least effected by anthropogenic contaminant inputs but has a complex 137Cs profile with a series of large peaks and valleys over the middle of the core, possibly reflecting fallout from nuclear tests in the 1950s at the Nevada Test Site. The 137Cs profile suggests a much greater sedimentation rate during testing which we hypothesize results from greatly increased dust fall on the lake and Virgin and Muddy River watersheds. The severe drought in the southwestern USA during the 1950s might also have played a role in variations in sedimentation rate in all of the cores. ?? 2009.

Genome-wide analysis of coordinated transcript abundance during seed development in different Brassica rapa morphotypes.

PubMed

Basnet, Ram Kumar; Moreno-Pachon, Natalia; Lin, Ke; Bucher, Johan; Visser, Richard G F; Maliepaard, Chris; Bonnema, Guusje

2013-12-01

Brassica seeds are important as basic units of plant growth and sources of vegetable oil. Seed development is regulated by many dynamic metabolic processes controlled by complex networks of spatially and temporally expressed genes. We conducted a global microarray gene co-expression analysis by measuring transcript abundance of developing seeds from two diverse B. rapa morphotypes: a pak choi (leafy-type) and a yellow sarson (oil-type), and two of their doubled haploid (DH) progenies, (1) to study the timing of metabolic processes in developing seeds, (2) to explore the major transcriptional differences in developing seeds of the two morphotypes, and (3) to identify the optimum stage for a genetical genomics study in B. rapa seed. Seed developmental stages were similar in developing seeds of pak choi and yellow sarson of B. rapa; however, the colour of embryo and seed coat differed among these two morphotypes. In this study, most transcriptional changes occurred between 25 and 35 DAP, which shows that the timing of seed developmental processes in B. rapa is at later developmental stages than in the related species B. napus. Using a Weighted Gene Co-expression Network Analysis (WGCNA), we identified 47 "gene modules", of which 27 showed a significant association with temporal and/or genotypic variation. An additional hierarchical cluster analysis identified broad spectra of gene expression patterns during seed development. The predominant variation in gene expression was according to developmental stages rather than morphotype differences. Since lipids are the major storage compounds of Brassica seeds, we investigated in more detail the regulation of lipid metabolism. Four co-regulated gene clusters were identified with 17 putative cis-regulatory elements predicted in their 1000 bp upstream region, either specific or common to different lipid metabolic pathways. This is the first study of genome-wide profiling of transcript abundance during seed development in B. rapa. The identification of key physiological events, major expression patterns, and putative cis-regulatory elements provides useful information to construct gene regulatory networks in B. rapa developing seeds and provides a starting point for a genetical genomics study of seed quality traits.

Prediction of Tensile Behavior of UHSFRC Considering the Flow Field in the Placing Dominated by Shear Flow.

PubMed

Moon, Joon-Shik; Kang, Su-Tae

2018-01-26

Considering the case of fabricating a UHSFRC (ultra-high strength fiber-reinforced concrete) beam with the method of one end placing and self-flowing to the other end, it was intended to simulate the variation of the fiber orientation distribution according to the flow distance and the variation of the resultant tensile behaviors. Then the validity of the simulation approach was shown by comparing the simulated results with experimental ones. A three-point bending test with a notched beam was adopted for the experiment and a finite element analysis was performed to obtain the simulated results for the bending test considering the flow-dependent tensile behavior of the UHSFRC. From the simulation for the fiber orientation distribution according to the flow distance, it could be found that the major change in the fiber orientation distribution took place within a short flow distance and most of the fibers became nearly aligned to the flow direction. After some flow distance, there was a not-so-remarkable variation in the fiber orientation distribution that could influence the tensile behavior of the composite. For this flow region, the consistent flexural test results, regardless of flow distance, demonstrate the reliability of the simulation.

Estimating Small-Body Gravity Field from Shape Model and Navigation Data

NASA Technical Reports Server (NTRS)

Park, Ryan S.; Werner, Robert A.; Bhaskaran, Shyam

2008-01-01

This paper presents a method to model the external gravity field and to estimate the internal density variation of a small-body. We first discuss the modeling problem, where we assume the polyhedral shape and internal density distribution are given, and model the body interior using finite elements definitions, such as cubes and spheres. The gravitational attractions computed from these approaches are compared with the true uniform-density polyhedral attraction and the level of accuracies are presented. We then discuss the inverse problem where we assume the body shape, radiometric measurements, and a priori density constraints are given, and estimate the internal density variation by estimating the density of each finite element. The result shows that the accuracy of the estimated density variation can be significantly improved depending on the orbit altitude, finite-element resolution, and measurement accuracy.

Robustness of fossil fish teeth for seawater neodymium isotope reconstructions under variable redox conditions in an ancient shallow marine setting

NASA Astrophysics Data System (ADS)

Huck, Claire E.; van de Flierdt, Tina; Jiménez-Espejo, Francisco J.; Bohaty, Steven M.; Röhl, Ursula; Hammond, Samantha J.

2016-03-01

Fossil fish teeth from pelagic open ocean settings are considered a robust archive for preserving the neodymium (Nd) isotopic composition of ancient seawater. However, using fossil fish teeth as an archive to reconstruct seawater Nd isotopic compositions in different sedimentary redox environments and in terrigenous-dominated, shallow marine settings is less proven. To address these uncertainties, fish tooth and sediment samples from a middle Eocene section deposited proximal to the East Antarctic margin at Integrated Ocean Drilling Program Site U1356 were analyzed for major and trace element geochemistry, and Nd isotopes. Major and trace element analyses of the sediments reveal changing redox conditions throughout deposition in a shallow marine environment. However, variations in the Nd isotopic composition and rare earth element (REE) patterns of the associated fish teeth do not correspond to redox changes in the sediments. REE patterns in fish teeth at Site U1356 carry a typical mid-REE-enriched signature. However, a consistently positive Ce anomaly marks a deviation from a pure authigenic origin of REEs to the fish tooth. Neodymium isotopic compositions of cleaned and uncleaned fish teeth fall between modern seawater and local sediments and hence could be authigenic in nature, but could also be influenced by sedimentary fluxes. We conclude that the fossil fish tooth Nd isotope proxy is not sensitive to moderate changes in pore water oxygenation. However, combined studies on sediments, pore waters, fish teeth, and seawater are needed to fully understand processes driving the reconstructed signature from shallow marine sections in proximity to continental sources.

FINITE-ELEMENT ANALYSIS OF MULTIPHASE IMMISCIBLE FLOW THROUGH SOILS

EPA Science Inventory

A finite-element model is developed for multiphase flow through soil involving three immiscible fluids: namely, air, water, and a nonaqueous phase liquid (NAPL). A variational method is employed for the finite-element formulation corresponding to the coupled differential equation...

STATIC ANALYSIS OF SHELLS OF REVOLUTION USING DOUBLY-CURVED QUADRILATERAL ELEMENTS DERIVED FROM ALTERNATE VARIATIONAL MODELS.

DTIC Science & Technology

geometrical shape of the finite element in both of the models is a doubly-curved quadrilateral element whose edge curves are the lines-of-curvature coordinates employed to define the shell midsurface . (Author)

Phylogenetic Conflict in Bears Identified by Automated Discovery of Transposable Element Insertions in Low-Coverage Genomes.

PubMed

Lammers, Fritjof; Gallus, Susanne; Janke, Axel; Nilsson, Maria A

2017-10-01

Phylogenetic reconstruction from transposable elements (TEs) offers an additional perspective to study evolutionary processes. However, detecting phylogenetically informative TE insertions requires tedious experimental work, limiting the power of phylogenetic inference. Here, we analyzed the genomes of seven bear species using high-throughput sequencing data to detect thousands of TE insertions. The newly developed pipeline for TE detection called TeddyPi (TE detection and discovery for Phylogenetic Inference) identified 150,513 high-quality TE insertions in the genomes of ursine and tremarctine bears. By integrating different TE insertion callers and using a stringent filtering approach, the TeddyPi pipeline produced highly reliable TE insertion calls, which were confirmed by extensive in vitro validation experiments. Analysis of single nucleotide substitutions in the flanking regions of the TEs shows that these substitutions correlate with the phylogenetic signal from the TE insertions. Our phylogenomic analyses show that TEs are a major driver of genomic variation in bears and enabled phylogenetic reconstruction of a well-resolved species tree, despite strong signals for incomplete lineage sorting and introgression. The analyses show that the Asiatic black, sun, and sloth bear form a monophyletic clade, in which phylogenetic incongruence originates from incomplete lineage sorting. TeddyPi is open source and can be adapted to various TE and structural variation callers. The pipeline makes it possible to confidently extract thousands of TE insertions even from low-coverage genomes (∼10×) of nonmodel organisms. This opens new possibilities for biologists to study phylogenies and evolutionary processes as well as rates and patterns of (retro-)transposition and structural variation. © The Author 2017. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

The first ANDES elements: 9-DOF plate bending triangles

NASA Technical Reports Server (NTRS)

Militello, Carmelo; Felippa, Carlos A.

1991-01-01

New elements are derived to validate and assess the assumed natural deviatoric strain (ANDES) formulation. This is a brand new variant of the assumed natural strain (ANS) formulation of finite elements, which has recently attracted attention as an effective method for constructing high-performance elements for linear and nonlinear analysis. The ANDES formulation is based on an extended parametrized variational principle developed in recent publications. The key concept is that only the deviatoric part of the strains is assumed over the element whereas the mean strain part is discarded in favor of a constant stress assumption. Unlike conventional ANS elements, ANDES elements satisfy the individual element test (a stringent form of the patch test) a priori while retaining the favorable distortion-insensitivity properties of ANS elements. The first application of this formulation is the development of several Kirchhoff plate bending triangular elements with the standard nine degrees of freedom. Linear curvature variations are sampled along the three sides with the corners as gage reading points. These sample values are interpolated over the triangle using three schemes. Two schemes merge back to conventional ANS elements, one being identical to the Discrete Kirchhoff Triangle (DKT), whereas the third one produces two new ANDES elements. Numerical experiments indicate that one of the ANDES element is relatively insensitive to distortion compared to previously derived high-performance plate-bending elements, while retaining accuracy for nondistorted elements.

Distribution and grain-size partitioning of metals in bovfom sediments of an experimentally acidified Wisconsin lake

USGS Publications Warehouse

Elder, John F.

2007-01-01

A study of concentrations and distribution of major and trace elements in surficial bottom sediments of Little Rock Lake in northern Wisconsin included examination of spatial variation and grain-size effects. No significant differences with respect to metal distribution in sediments were observed between the two basins of the lake, despite the experimental acidification of one of the basins from pH 6.1 to 4.6. The concentrations of most elements in the lake sediments were generally similar to soil concentrations in the area and were well below sediment quality criteria. Two exceptions were lead and zinc, whose concentrations in July 1990 exceeded the criteria of 50 μg/g and 100 μg/g, respectively, in both littoral and pelagic sediments. Concentrations of some elements, particularly Cu, Pb, and Zn, increased along transects from nearshore to midlake, following a similar gradient of sedimentary organic carbon. In contrast, Mn, Fe, and alkali/alkaline-earth elements were at maximum concentrations in nearshore sediments. These elements are less likely to partition to organic particles, and their distribution is more dependent on mineralogical composition, grain size, and other factors. Element concentrations varied among different sediment grain-size fractions, although a simple inverse relation to grain size was not observed. Fe, Mn, Pb, and Zn were more concentrated in a grain-size range 20–60 tm than in either the very fine or the coarse fractions, possibly because of the aggregation of smaller particles cemented together by organic and Fe/Mn hydrous-oxide coatings.

Year-round record of dissolved and particulate metals in surface snow at Dome Concordia (East Antarctica).

PubMed

Grotti, Marco; Soggia, Francesco; Ardini, Francisco; Magi, Emanuele; Becagli, Silvia; Traversi, Rita; Udisti, Roberto

2015-11-01

From January to December 2010, surface snow samples were collected with monthly resolution at the Concordia station (75°06'S, 123°20'E), on the Antarctic plateau, and analysed for major and trace elements in both dissolved and particulate (i.e. insoluble particles, >0.45 μm) phase. Additional surface snow samples were collected with daily resolution, for the determination of sea-salt sodium and not-sea-salt calcium, in order to support the discussion on the seasonal variations of trace elements. Concentrations of alkaline and alkaline-earth elements were higher in winter (April-October) than in summer (November-March) by a factor of 1.2-3.3, in agreement with the higher concentration of sea-salt atmospheric particles reaching the Antarctic plateau during the winter. Similarly, trace elements were generally higher in winter by a factor of 1.2-1.5, whereas Al and Fe did not show any significant seasonal trend. Partitioning between dissolved and particulate phases did not change with the sampling period, but it depended only on the element: alkaline and alkaline-earth elements, as well as Co, Cu, Mn, Pb and Zn were for the most part (>80%) in the dissolved phase, whereas Al and Fe were mainly associated with the particulate phase (>80%) and Cd, Cr, V were nearly equally distributed between the phases. Finally, the estimated marine and crustal enrichment factors indicated that Cd, Cr, Cu, Pb and Zn have a dominant anthropogenic origin, with a possible contribution from the Concordia station activities. Copyright © 2014 Elsevier Ltd. All rights reserved.

High spatial resolution analysis of ferromanganese concretions by LA-ICP-MS†

PubMed Central

Axelsson, Mikael D; Rodushkin, Ilia; Baxter, Douglas C; Ingri, Johan; Öhlander, Björn

2002-01-01

A procedure was developed for the determination of element distributions in cross-sections of ferromanganese concretions using laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS). The effects of carrier flow rates, rf forward power, ablation energy, ablation spot size, repetition rate and number of shots per point on analyte intensity were studied. It is shown that different carrier gas flow rates are required in order to obtain maximum sensitivities for different groups of elements, thus complicating the optimisation of ICP parameters. On the contrary, LA parameters have very similar effects on almost all elements studied, thus providing a common optimum parameter set for the entire mass range. However, for selected LA parameters, the use of compromise conditions was necessary in order to compensate for relatively slow data acquisition by ICP-MS and maintain high spatial resolution without sacrificing the multielemental capabilities of the technique. Possible variations in ablation efficiency were corrected for mathematically using the sum of Fe and Mn intensities. Quantification by external calibration against matrix-matched standards was successfully used for more than 50 elements. These standards, in the form of pressed pellets (no binder), were prepared in-house using ferromanganese concentrates from a deep-sea nodule reference material as well as from shallow-marine concretions varying in size and having different proportions of three major phases: aluminosilicates, Fe- and Mn-oxyhydroxides. Element concentrations in each standard were determined by means of conventional solution nebulisation ICP-MS following acid digestion. Examples of selected inter-element correlations in distribution patterns along the cross-section of a concretion are given.

Improved representation of investment decisions in assessments of CO2 mitigation

NASA Astrophysics Data System (ADS)

Iyer, Gokul C.; Clarke, Leon E.; Edmonds, James A.; Flannery, Brian P.; Hultman, Nathan E.; McJeon, Haewon C.; Victor, David G.

2015-05-01

Assessments of emissions mitigation patterns have largely ignored the huge variation in real-world factors--in particular, institutions--that affect where, how and at what costs firms deploy capital. We investigate one such factor--how national institutions affect investment risks and thus the cost of financing. We use an integrated assessment model (IAM; ref. ) to represent the variation in investment risks across technologies and regions in the electricity generation sector--a pivotally important sector in most assessments of climate change mitigation--and compute the impact on the magnitude and distribution of mitigation costs. This modified representation of investment risks has two major effects. First, achieving an emissions mitigation goal is more expensive than it would be in a world with uniform investment risks. Second, industrialized countries mitigate more, and developing countries mitigate less. Here, we introduce a new front in the research on how real-world factors influence climate mitigation. We also suggest that institutional reforms aimed at lowering investment risks could be an important element of cost-effective climate mitigation strategies.

Geochemical features of sulfides from the Deyin-1 hydrothermal field at the southern Mid-Atlantic Ridge near 15°S

NASA Astrophysics Data System (ADS)

Wang, Shujie; Li, Huaiming; Zhai, Shikui; Yu, Zenghui; Cai, Zongwei

2017-12-01

In this study, geochemical compositions of elements in sulfide samples collected from the Deyin-1 hydrothermal field near the 15°S southern Mid-Atlantic Ridge (SMAR) were analyzed by the X-ray fluorescence spectrometry (XRF) and inductively coupled plasma mass spectrometry (ICP-MS) to examine the enrichment regulations of ore-forming elements and hydrothermal mineralization. These sulfide precipitates can be classified macroscopically into three types: Fe-rich sulfide, Fe-Cu-rich sulfide and Fe-Zn-rich sulfide, and are characterized by the enrichment of base metal elements along with a sequence of Fe>Zn>Cu. Compared with sulfides from other hydrothermal fields on MAR, Zn concentrations of sulfides in the research area are significantly high, while Cu concentrations are relatively low. For all major, trace or rare-earth elements (REE), their concentrations and related characteristic parameters exhibit significant variations (up to one or two orders of magnitude), which indicates the sulfides from different hydrothermal vents or even a same station were formed at different stages of hydrothermal mineralization, and suggests the variations of chemical compositions of the hydrothermal fluid with respect to time. The hydrothermal temperatures of sulfides precipitation decreased gradually from station TVG10 (st.TVG10) to st.TVG12, and to st.TVG11, indicating that the precipitation of hydrothermal sulfides is subjected to conditions changed from high temperature to low temperature, and that the hydrothermal activity of study area was at the late stage of a general trend of evolution from strong to weak. The abnormally low concentrations of REE in sulfides and their similar chondrite-normalized REE patterns show that REEs in all sulfides were derived from a same source, but underwent different processes of migration or enrichment, or sulfides were formed at different stages of hydrothermal mineralization. The sulfides collected from the active hydrothermal vent were mainly attributed to precipitating directly from the hydrothermal fluid, while those collected from the extinct hydrothermal chimney might have already been altered by the seawater. Generally, ore-forming elements in the sulfides can be divided into three groups: Fe-based element group, Cu-based element group and Zn-based element group. The first group includes Fe, Mn, Cr, Mo, Sn, Rb and bio-enriching elements, such as P and Si, reflecting the similar characteristics to Fe in the study area. And the second group contains Cu, W, Co, Se, Te and Bi, suggesting the similar behavior with Cu. Moreover, the third group includes Zn, Hf, Hg, Cd, Ta, Ga, Pb, As, Ag, Ni and Sb, which indicates the geochemical characteristics of most dispersed trace elements controlled by Zn-bearing minerals to some extent.

Atmospheric pollution for trace elements in the remote high-altitude atmosphere in central Asia as recorded in snow from Mt. Qomolangma (Everest) of the Himalayas.

PubMed

Lee, Khanghyun; Hur, Soon Do; Hou, Shugui; Hong, Sungmin; Qin, Xiang; Ren, Jiawen; Liu, Yapping; Rosman, Kevin J R; Barbante, Carlo; Boutron, Claude F

2008-10-01

A series of 42 snow samples covering over a one-year period from the fall of 2004 to the summer of 2005 were collected from a 2.1-m snow pit at a high-altitude site on the northeastern slope of Mt. Everest. These samples were analyzed for Al, V, Cr, Mn, Co, Ni, Cu, Zn, As, Rb, Sr, Cd, Sb, Pb, and Bi in order to characterize the relative contributions from anthropogenic and natural sources to the fallout of these elements in central Himalayas. Our data were also considered in the context of monsoon versus non-monsoon seasons. The mean concentrations of the majority of the elements were determined to be at the pg g(-1) level with a strong variation in concentration with snow depth. While the mean concentrations of most of the elements were significantly higher during the non-monsoon season than during the monsoon season, considerable variability in the trace element inputs to the snow was observed during both periods. Cu, Zn, As, Cd, Sb, and Bi displayed high crustal enrichment factors (EFc) in most samples, while Cr, Ni, Rb, and Pb show high EFc values in some of the samples. Our data indicate that anthropogenic inputs are potentially important for these elements in the remote high-altitude atmosphere in the central Himalayas. The relationship between the EFc of each element and the Al concentration indicates that a dominant input of anthropogenic trace elements occurs during both the monsoon and non-monsoon seasons, when crustal contribution is relatively minor. Finally, a comparison of the trace element fallout fluxes calculated in our samples with those recently obtained at Mont Blanc, Greenland, and Antarctica provides direct evidence for a geographical gradient of the atmospheric pollution with trace elements on a global scale.

Chalcophile element geochemistry of the Boggy Plain zoned pluton, southeastern Australia: a S-saturated barren compositionally diverse magmatic system

NASA Astrophysics Data System (ADS)

Park, Jung-Woo; Campbell, Ian H.; Ickert, Ryan B.; Allen, Charlotte M.

2013-02-01

The behavior of the platinum group elements (PGE) and Re in felsic magmas is poorly understood due to scarcity of data. We report the concentrations of Ni, Cu, Re, and PGE in the compositionally diverse Boggy Plain zoned pluton (BPZP), which shows a variation of rock type from gabbro through granodiorite and granite to aplite with a SiO2 range from 52 to 74 wt %. In addition, major silicate and oxide minerals were analyzed for Ni, Cu, and Re, and a systematic sulfide study was carried out to investigate the role of silicate, oxide, and sulfide minerals on chalcophile element geochemistry of the BPZP. Mass balance calculation shows that the whole rock Cu budget hosted by silicate and oxide minerals is <13 wt % and that Cu is dominantly located in sulfide phases, whereas most of the whole rock Ni budget (>70 wt %) is held in major silicate and oxide minerals. Rhenium is dominantly hosted by magnetite and ilmenite. Ovoid-shaped sulfide blebs occur at the boundary between pyroxene phenocrysts and neighboring interstitial phases or within interstitial minerals in the gabbro and the granodiorite. The blebs are composed of pyrrhotite, pyrite, chalcopyrite, and S-bearing Fe-oxide, which contain total trace metals (Co, Ni, Cu, Ag, Pb) up to ~16 wt %. The mineral assemblage, occurrence, shape, and composition of the sulfide blebs are a typical of magmatic sulfide. PGE concentrations in the BPZP vary by more than two orders of magnitude from gabbro (2.7-7.8 ppb Pd, 0.025-0.116 ppb Ir) to aplite (0.05 ppb Pd, 0.001 ppb Ir). Nickel, Cu, Re, and PGE concentrations are positively correlated with MgO in all the rock types although there is a clear discontinuity between the granodiorite and the granite in the trends for Ni, Rh, and Ir when plotted against MgO. Cu/Pd values gradually increase from 6,100 to 52,600 as the MgO content decreases. The sulfide petrology and chalcophile element geochemistry of the BPZP show that sulfide saturation occurred in the late gabbroic stage of magma differentiation. Segregation and distribution of these sulfide blebs controlled Cu and PGE variations within the BPZP rocks although the magma of each rock type may have experienced a different magma evolution history in terms of crustal assimilation and crystal fractionation. The sulfide melt locked in the cumulate rocks must have sequestered a significant portion of the chalcophile elements, which restricted the availability of these metals to magmatic-hydrothermal ore fluids. Therefore, we suggest that the roof rocks that overlay the BPZP were not prospective for magmatic-hydrothermal Cu, Au, or Cu-Au deposits.

The 'North American shale composite' - Its compilation, major and trace element characteristics

NASA Technical Reports Server (NTRS)

Gromet, L. P.; Dymek, R. F.; Haskin, L. A.; Korotev, R. L.

1984-01-01

North American shale composite (NASC) major element composition and compilation are presented, together with rare earth element (REE) redeterminations obtained by high precision analytical methods. The major element composition of the NASC compares closely with other average shale compositions, and significant portions of the REE and some other trace elements are contained in minor phases. The uneven REE distribution in NASC powder appears to yield the heterogeneity in analyzed aliquants. REE distributions of detrital sediments may to some extent be dependent on their minor mineral assemblages and the sedimentological factors controlling these assemblages.

IUPAC Periodic Table of Isotopes for the Educational Community

DOE Office of Scientific and Technical Information (OSTI.GOV)

Holden N. E.; Holden,N.E.; Coplen,T.B.

2012-07-15

John Dalton first proposed the concept of atomic weights of the elements in the first decade of the nineteenth century. These atomic weights of the chemical elements were thought of as constants of nature, similar to the speed of light. Dmitri Mendeleev arranged the atomic weights of the elements in ascending order of value and used the systematic variation of their chemical properties to produce his Periodic Table of the Elements in 1869. Measurement of atomic weight values became an important chemical activity for a century and a half. Theodore Richards received a Noble Prize for his work in thismore » area. In 1913, Fredrick Soddy found a species of radium, which had an atomic weight value of 228, compared to the familiar radium gas value of 226. Soddy coined the term 'isotope' (Greek for 'in the same place') to account for this second atomic weight value in the radium position of the Periodic Table. Both of these isotopes of radium are radioactive. Radioactive isotopes are energetically unstable and will decay (disintegrate) over time. The time it takes for one half of a sample of a given radioactive isotope to decay is the half-life of that isotope. In addition to having different atomic weight values, radium-226 and radium-228 also have different half-life values. Around the same time as Soddy's work, J.J. Thomson (discoverer of the electron) identified two stable (non-radioactive) isotopes of the same element, neon. Over the next 40 years, the majority of the known chemical elements were found to have two or more stable (or long-lived radioactive isotopes that contribute significantly to the determination of the atomic weights of the elements).« less

Validating modelled data on major and trace element deposition in southern Germany using Sphagnum moss

NASA Astrophysics Data System (ADS)

Kempter, Heike; Krachler, Michael; Shotyk, William; Zaccone, Claudio

2017-10-01

Sphagnum mosses were collected from four ombrotrophic bogs in two regions of southern Germany: Upper Bavaria (Oberbayern, OB) and the Northern Black Forest (Nordschwarzwald, NBF). Surfaces of Sphagnum carpets were marked with plastic mesh and, one year later, plant matter was harvested and productivity determined. Major and trace element concentrations (Ag, Al, As, Ba, Bi, Cd, Co, Cr, Cu, Fe, Mn, Mo, Pb, Rb, Sb, Sc, Sr, Th, Ti, Tl, U, V, Zn) were determined in acid digests using sector field ICP-MS. Up to 12 samples (40 × 40 cm) were collected per site, and 6-10 sites investigated per bog. Variation in element accumulation rates within a bog is mostly the result of the annual production rate of the Sphagnum mosses which masks not only the impact of site effects, such as microtopography and the presence of dwarf trees, but also local and regional conditions, including land use in the surrounding area, topography, etc. The difference in productivity between peat bogs results in distinctly higher element accumulation rates at the NBF bogs compared to those from OB for all studied elements. The comparison with the European Monitoring and Evaluation Program (EMEP; wet-only and total deposition) and Modelling of Air Pollutants and Ecosystem Impact (MAPESI; total deposition) data shows that accumulation rates obtained using Sphagnum are in the same range of published values for direct measurements of atmospheric deposition of As, Cd, Cu, Co, Pb, and V in both regions. The accordance is very dependent on how atmospheric deposition rates were obtained, as different models to calculate the deposition rates may yield different fluxes even for the same region. In future studies of atmospheric deposition of trace metals, both Sphagnum moss and deposition collectors have to be used on the same peat bog and results compared. Antimony, however, shows considerable discrepancy, because it is either under-estimated by Sphagnum moss or over-estimated by both atmospheric deposition models. Atmospheric deposition data obtained from sampling in open fields is unlikely to always perfectly match data obtained using living Sphagnum moss from bogs. In fact, plant uptake and biochemical utilization by living moss may affect accumulation rates of those elements that are essential for plant nutrition (macro and micronutrients), which is clearly seen in the data presented here for Mn, Fe and Zn. Furthermore, Sphagnum moss is a unique receptor, with its characteristic roughness and chemical complexity. These two aspects, combined with conditions found on the bog surface (variations in microtopography, shrubs, trees, wetness, snow cover, etc.), result in a unique type of interception and retention. Despite all these factors, the comparison with modelled data shows that Sphagnum moss is a good indicator of atmospheric deposition at least in a semi-quantitative manner and certainly reflects inputs to terrestrial ecosystems.

Compositional variation within thick (>10 m) flow units of Mauna Kea Volcano cored by the Hawaii Scientific Drilling Project

NASA Astrophysics Data System (ADS)

Huang, Shichun; Vollinger, Michael J.; Frey, Frederick A.; Rhodes, J. Michael; Zhang, Qun

2016-07-01

Geochemical analyses of stratigraphic sequences of lava flows are necessary to understand how a volcano works. Typically one sample from each lava flow is collected and studied with the assumption that this sample is representative of the flow composition. This assumption may not be valid. The thickness of flows ranges from <1 to >100 m. Geochemical heterogeneity in thin flows may be created by interaction with the surficial environment whereas magmatic processes occurring during emplacement may create geochemical heterogeneities in thick flows. The Hawaii Scientific Drilling Project (HSDP) cored ∼3.3 km of basalt erupted at Mauna Kea Volcano. In order to determine geochemical heterogeneities in a flow, multiple samples from four thick (9.3-98.4 m) HSDP flow units were analyzed for major and trace elements. We found that major element abundances in three submarine flow units are controlled by the varying proportion of olivine, the primary phenocryst phase in these samples. Post-magmatic alteration of a subaerial flow led to loss of SiO2, CaO, Na2O, K2O and P2O5, and as a consequence, contents of immobile elements, such as Fe2O3 and Al2O3, increase. The mobility of SiO2 is important because Mauma Kea shield lavas divide into two groups that differ in SiO2 content. Post-magmatic mobility of SiO2 adds complexity to determining if these groups reflect differences in source or process. The most mobile elements during post-magmatic subaerial and submarine alteration are K and Rb, and Ba, Sr and U were also mobile, but their abundances are not highly correlated with K and Rb. The Ba/Th ratio has been used to document an important role for a plagioclase-rich source component for basalt from the Galapagos, Iceland and Hawaii. Although Ba/Th is anomalously high in Hawaiian basalt, variation in Ba abundance within a single flow shows that it is not a reliable indicator of a deep source component. In contrast, ratios involving elements that are typically immobile, such as La/Nb, La/Th, Nb/Th, Ce/Pb, Sr/Nd, La/Sm, Sm/Yb, Nb/Zr, Nb/Y and La/Yb, are uniform within the units, and they can be used to constrain petrogenetic processes. Nevertheless all elements are mobile under some conditions. For example, a surprising result is that relative to other samples, the uppermost sample collected from subaerial flow Unit 70, less than 1 m below the flow surface, is depleted in P, HREE and Y relative to all other samples from this flow unit. This result is complementary to the P, REE and Y enrichment found in subaerial lava flows from several Hawaiian shields, e.g., Kahoolawe and Koolau Volcanoes. These enrichments require mobilization of REE and followed by deposition a P-rich mineral.

Geochemical data for Colorado soils-Results from the 2006 state-scale geochemical survey

USGS Publications Warehouse

Smith, David B.; Ellefsen, Karl J.; Kilburn, James E.

2010-01-01

In 2006, soil samples were collected at 960 sites (1 site per 280 square kilometers) throughout the state of Colorado. These samples were collected from a depth of 0-15 centimeters and, following a near-total multi-acid digestion, were analyzed for a suite of more than 40 major and trace elements. The resulting data set provides a baseline for the natural variation in soil geochemistry for Colorado and forms the basis for detecting changes in soil composition that might result from natural processes or anthropogenic activities. This report describes the sampling and analytical protocols used and makes available all the soil geochemical data generated in the study.

Development and Validation of a Statistical Shape Modeling-Based Finite Element Model of the Cervical Spine Under Low-Level Multiple Direction Loading Conditions

PubMed Central

Bredbenner, Todd L.; Eliason, Travis D.; Francis, W. Loren; McFarland, John M.; Merkle, Andrew C.; Nicolella, Daniel P.

2014-01-01

Cervical spinal injuries are a significant concern in all trauma injuries. Recent military conflicts have demonstrated the substantial risk of spinal injury for the modern warfighter. Finite element models used to investigate injury mechanisms often fail to examine the effects of variation in geometry or material properties on mechanical behavior. The goals of this study were to model geometric variation for a set of cervical spines, to extend this model to a parametric finite element model, and, as a first step, to validate the parametric model against experimental data for low-loading conditions. Individual finite element models were created using cervical spine (C3–T1) computed tomography data for five male cadavers. Statistical shape modeling (SSM) was used to generate a parametric finite element model incorporating variability of spine geometry, and soft-tissue material property variation was also included. The probabilistic loading response of the parametric model was determined under flexion-extension, axial rotation, and lateral bending and validated by comparison to experimental data. Based on qualitative and quantitative comparison of the experimental loading response and model simulations, we suggest that the model performs adequately under relatively low-level loading conditions in multiple loading directions. In conclusion, SSM methods coupled with finite element analyses within a probabilistic framework, along with the ability to statistically validate the overall model performance, provide innovative and important steps toward describing the differences in vertebral morphology, spinal curvature, and variation in material properties. We suggest that these methods, with additional investigation and validation under injurious loading conditions, will lead to understanding and mitigating the risks of injury in the spine and other musculoskeletal structures. PMID:25506051

Using laser micro mass spectrometry with the LAMMA-1000 instrument for monitoring relative elemental concentrations in vitrinite

USGS Publications Warehouse

Morelli, J.J.; Hercules, D.M.; Lyons, P.C.; Palmer, C.A.; Fletcher, J.D.

1988-01-01

The variation in relative elemental concentrations among a series of coal macerals belonging to the vitrinite maceral group was determined using laser micro mass spectrometry (LAMMS). Variations in Ba, Cr, Ga, Sr, Ti, and V concentrations among the coals were determined using the LAMM A-1000 instrument. LAMMS analysis is not limited to these elements; their selection illustrates the application of the technique. Ba, Cr, Ga, Sr, Ti, and V have minimal site-to-site variance in the vitrinite macerals of the studied coals as measured by LAMMS. The LAMMS data were compared with bulk elemental data obtained by instrumental neutron activation analysis (INAA) and D. C. arc optical emission spectroscopy (DCAS) in order to determine the reliability of the LAMMS data. The complex nature of the ionization phenomena in LAMMS and the lack of standards characterized on a microscale makes obtaining quantitative elemental data within the ionization microvolume difficult; however, we demonstrate that the relative variation of an element among vitrinites from different coal beds in the eastern United States can be observed using LAMMS in a "bulk" mode by accumulating signal intensities over several microareas of each vitrinite. Our studies indicate gross changes (greater than a factor of 2 to 5 depending on the element) can be monitored when the elemental concentration is significantly above the detection limit. "Bulk" mode analysis was conducted to evaluate the accuracy of future elemental LAMMS microanalyses. The primary advantage of LAMMS is the inherent spatial resolution, ~ 20 ??m for coal. Two different vitrite bands in the Lower Bakerstown coal bed (CLB-1) were analyzed. The analysis did not establish any certain concentration differences in Ba, Cr, Ga, Sr, Ti, and V between the two bands. ?? 1988 Springer-Verlag.

Chromosomal insertion and excision of a 30 kb unstable genetic element is responsible for phase variation of lipopolysaccharide and other virulence determinants in Legionella pneumophila.

PubMed

Lüneberg, E; Mayer, B; Daryab, N; Kooistra, O; Zähringer, U; Rohde, M; Swanson, J; Frosch, M

2001-03-01

We recently described the phase-variable expression of a virulence-associated lipopolysaccharide (LPS) epitope in Legionella pneumophila. In this study, the molecular mechanism for phase variation was investigated. We identified a 30 kb unstable genetic element as the molecular origin for LPS phase variation. Thirty putative genes were encoded on the 30 kb sequence, organized in two putative opposite transcription units. Some of the open reading frames (ORFs) shared homologies with bacteriophage genes, suggesting that the 30 kb element was of phage origin. In the virulent wild-type strain, the 30 kb element was located on the chromosome, whereas excision from the chromosome and replication as a high-copy plasmid resulted in the mutant phenotype, which is characterized by alteration of an LPS epitope and loss of virulence. Mapping and sequencing of the insertion site in the genome revealed that the chromosomal attachment site was located in an intergenic region flanked by genes of unknown function. As phage release could not be induced by mitomycin C, it is conceivable that the 30 kb element is a non-functional phage remnant. The protein encoded by ORF T on the 30 kb plasmid could be isolated by an outer membrane preparation, indicating that the genes encoded on the 30 kb element are expressed in the mutant phenotype. Therefore, it is conceivable that the phenotypic alterations seen in the mutant depend on high-copy replication of the 30 kb element and expression of the encoded genes. Excision of the 30 kb element from the chromosome was found to occur in a RecA-independent pathway, presumably by the involvement of RecE, RecT and RusA homologues that are encoded on the 30 kb element.

Sr and U isotope ratios in soil waters as tracers of weathering dynamic in soils (Strengbach catchment - Vosges-mountains; France).

NASA Astrophysics Data System (ADS)

Chabaux, François; Prunier, Jonathan; Pierret, Marie-Claire; Stille, Peter

2013-04-01

It is proposed in this study to highlight the interest of multi-tracer geochemical approaches combining measurement of major and trace element concentrations along with U and Sr isotopic ratios to constrain the characterization of the present-day weathering processes controlling the chemical composition of waters and soils in natural ecosystems. This is important if we want to predict and to model correctly the response of ecosystems to recent environmental changes. The approach is applied to the small granitic Strengbah Catchment, located in the Vosges Mountain (France), used and equipped as a hydro-geochemical observatory since 1986 (Observatoire Hydro-Géochimique de l'Environnement; http://ohge.u-strasbg.fr). This study includes the analysis of major and trace element concentrations and (U-Sr) isotope ratios in soil solutions collected within two soil profiles located on two experimental plots of this watershed, along with the analysis of soil samples and vegetation samples from these two plots. The depth variation of elemental concentrations of soil solutions confirms the important influence of the vegetation cycling on the budget of Ca, K, Rb and Sr, whereas Mg and Si budget in soil solutions are quasi exclusively controlled by weathering processes. Variation of Sr, and U isotopic ratios with depth also demonstrates that the sources and biogeochemical processes controlling the Sr budget of soil solutions is different in the uppermost soil horizons and in the deeper ones, and clearly influence by the vegetation cycling. From the obtained data, it can be therefore proposed a scheme where in addition to the external flux associated to the decomposition of organic matter and throughfall, occurs a double lithogenic flux: a surface flux which can be associated to dissolution of secondary minerals contained in fine silt fractions and a deeper one, controlled by water-rock interactions which can mobilize elements from primary minerals like plagioclases or orthose. These results shows also that the Strengbach watershed is in a transient state of weathering with an important loss of nutriments such as Ca in soils solutions since 15years, associated with an increase of a lithogenic flux indicating a recent modification of weathering/dissolution reactions involved in the soil horizons. The origin of the weathering modification could be the consequence of the acid rains on weathering granitic bedrock or a consequence of forest exploitation incompatible with the nutriment reserve of soils with recent plantations of conifer, which impoverish soils.

Comparative Genomics of the Listeria monocytogenes ST204 Subgroup

PubMed Central

Fox, Edward M.; Allnutt, Theodore; Bradbury, Mark I.; Fanning, Séamus; Chandry, P. Scott

2016-01-01

The ST204 subgroup of Listeria monocytogenes is among the most frequently isolated in Australia from a range of environmental niches. In this study we provide a comparative genomics analysis of food and food environment isolates from geographically diverse sources. Analysis of the ST204 genomes showed a highly conserved core genome with the majority of variation seen in mobile genetic elements such as plasmids, transposons and phage insertions. Most strains (13/15) harbored plasmids, which although varying in size contained highly conserved sequences. Interestingly 4 isolates contained a conserved plasmid of 91,396 bp. The strains examined were isolated over a period of 12 years and from different geographic locations suggesting plasmids are an important component of the genetic repertoire of this subgroup and may provide a range of stress tolerance mechanisms. In addition to this 4 phage insertion sites and 2 transposons were identified among isolates, including a novel transposon. These genetic elements were highly conserved across isolates that harbored them, and also contained a range of genetic markers linked to stress tolerance and virulence. The maintenance of conserved mobile genetic elements in the ST204 population suggests these elements may contribute to the diverse range of niches colonized by ST204 isolates. Environmental stress selection may contribute to maintaining these genetic features, which in turn may be co-selecting for virulence markers relevant to clinical infection with ST204 isolates. PMID:28066377

Comparative Genomics of the Listeria monocytogenes ST204 Subgroup.

PubMed

Fox, Edward M; Allnutt, Theodore; Bradbury, Mark I; Fanning, Séamus; Chandry, P Scott

2016-01-01

The ST204 subgroup of Listeria monocytogenes is among the most frequently isolated in Australia from a range of environmental niches. In this study we provide a comparative genomics analysis of food and food environment isolates from geographically diverse sources. Analysis of the ST204 genomes showed a highly conserved core genome with the majority of variation seen in mobile genetic elements such as plasmids, transposons and phage insertions. Most strains (13/15) harbored plasmids, which although varying in size contained highly conserved sequences. Interestingly 4 isolates contained a conserved plasmid of 91,396 bp. The strains examined were isolated over a period of 12 years and from different geographic locations suggesting plasmids are an important component of the genetic repertoire of this subgroup and may provide a range of stress tolerance mechanisms. In addition to this 4 phage insertion sites and 2 transposons were identified among isolates, including a novel transposon. These genetic elements were highly conserved across isolates that harbored them, and also contained a range of genetic markers linked to stress tolerance and virulence. The maintenance of conserved mobile genetic elements in the ST204 population suggests these elements may contribute to the diverse range of niches colonized by ST204 isolates. Environmental stress selection may contribute to maintaining these genetic features, which in turn may be co-selecting for virulence markers relevant to clinical infection with ST204 isolates.

Chemometric approach to evaluate element distribution in muscle, liver and fish bone of roach (Rutilus rutilus), silver bream (Blicca bjoerkna) and crucian carp (Carassius carassius) from Swarzędzkie Lake (Poland) using ICP-MS and FIAS-CVAAS techniques.

PubMed

Chudzińska, Maria; Komorowicz, Izabela; Hanć, Anetta; Gołdyn, Ryszard; Barałkiewicz, Danuta

2016-11-01

The content of elements in fish tissues and organs from Swarzędzkie Lake was investigated in order to evaluate the possible risk associated with their consumption by animals as well as humans. Samples of muscle, liver and fish bone of three fish species; roach (Rutilus rutilus), silver bream (Blicca bjoerkna) and crucian carp (Carassius carassius) were collected from seine catches undertaken as part of the biomanipulation of Swarzędzkie Lake. Element concentration (Al, As, Cd, Co, Cr, Cu, Hg, Ni, Pb, Zn) was determined by inductively coupled plasma mass spectrometry (ICP-MS), with the exception of Hg where the flow injection analysis system cold vapour atomic absorption spectrometry (FIAS-CVAAS) was applied. The study indicated a large variation in the occurrence of the investigated elements in different parts of the fish body. The highest content of Al and Zn was stated in all fish organs for each fish species. The majority of the applied statistical and chemometric methods (e.g., PCA, CA) refer to roach since we had a large number of data for this species. The obtained results were assessed in terms of their accuracy and precision using certified reference material of Fish Muscle ERM BB422.

Minor elements incorporation control by ionic radius and growth rate on a stalagmite from the Chauvet Cave (SE-France)

NASA Astrophysics Data System (ADS)

Bourdin, C.; Douville, E.; Genty, D.

2009-12-01

A multi-elemental study focusing on earth-alkalis (Mg, Ca, Sr and Ba), uranium and rare-earth elements (REE) in the calcite of a stalagmite from the Chauvet Cave (SE of France) has been achieved by ICP-MS. The Chau-stm6 stalagmite which grew from 33 to 11.5 ky had already been dated and the published d13C and d18O profile is used as a paleoclimatic benchmark. Ba and Sr profiles show an abrupt concentration increase at the beginning of the last deglaciation whereas U and Mg feature a decreasing trend. REY (REE+yttrium) concentrations decrease markedly during early deglaciation (between 15 and 14.5 ky). The transition corresponds to a change from a slow to a fast growth rate. These variations can be explained by the crystallographic control of ionic radii of the minor elements: incorporation of small ions compared to Ca such as U, Mg, heavy REE are favoured during slow growth period (i.e. glacial) whereas large ions such as Ba, Sr and light REE are preferentially precipitated during fast growth period (i.e. Bolling-Allerod). This crystallographic effect seems to be dominant here because the soil above the cave is sparse. And may not have played a major role on the opposite to the water-limestone interaction.

LA-ICP-MS of magnetite: Methods and reference materials

USGS Publications Warehouse

Nadoll, P.; Koenig, A.E.

2011-01-01

Magnetite (Fe3O4) is a common accessory mineral in many geologic settings. Its variable geochemistry makes it a powerful petrogenetic indicator. Electron microprobe (EMPA) analyses are commonly used to examine major and minor element contents in magnetite. Laser ablation ICP-MS (LA-ICP-MS) is applicable to trace element analyses of magnetite but has not been widely employed to examine compositional variations. We tested the applicability of the NIST SRM 610, the USGS GSE-1G, and the NIST SRM 2782 reference materials (RMs) as external standards and developed a reliable method for LA-ICP-MS analysis of magnetite. LA-ICP-MS analyses were carried out on well characterized magnetite samples with a 193 nm, Excimer, ArF LA system. Although matrix-matched RMs are sometimes important for calibration and normalization of LA-ICP-MS data, we demonstrate that glass RMs can produce accurate results for LA-ICP-MS analyses of magnetite. Cross-comparison between the NIST SRM 610 and USGS GSE-1G indicates good agreement for magnetite minor and trace element data calibrated with either of these RMs. Many elements show a sufficiently good match between the LA-ICP-MS and the EMPA data; for example, Ti and V show a close to linear relationship with correlation coefficients, R2 of 0.79 and 0.85 respectively. ?? 2011 The Royal Society of Chemistry.

Polycyclic aromatic hydrocarbons and trace elements bounded to airborne PM10 in the harbor of Volos, Greece: Implications for the impact of harbor activities

NASA Astrophysics Data System (ADS)

Manoli, E.; Chelioti-Chatzidimitriou, A.; Karageorgou, K.; Kouras, A.; Voutsa, D.; Samara, C.; Kampanos, I.

2017-10-01

Harbors are often characterized by high levels of air pollutants that are emitted from ship traffic and other harbor activities. In the present study, the concentrations of Polycyclic Aromatic Hydrocarbons (PAHs) and trace elements (As, Cd, Ni, Pb, Cr, Mn, Zn, and Fe) bounded to the inhalable particulate matter PM10 were studied in the harbor of Volos, central Greece, during a 2-year period (2014-2015). Seasonal and daily variations were investigated. Moreover, total carcinogenic and mutagenic activities of PAHs were calculated. The effect of major wind sectors (sea, city, industrial, harbor) was estimated to assess the potential contribution of ship traffic and harbor activities, such as scrap metal handling operations. Results showed that the harbor sector (calm winds ≤ 0.5 m s-1) was associated with the highest concentrations of PM10. The harbor sector was also associated with relatively increased levels of trace elements (As, Fe, Cr, Mn, Ni), however the effect of this sector was lower than the corresponding effect of the industrial wind sector. The sea sector showed only a slight increase in B[a]Py and Σ12PAHs, whereas the highest increasing effect for PAHs and traffic-related elements, such as Pb and Zn, was evidenced for the city sector.

Inappropriate analysis does not reveal the ecological causes of evolution of stickleback armour: a critique of Spence et al. 2013.

PubMed

MacColl, Andrew D C; Aucott, Beth

2014-09-01

In a recent paper in this journal, Spence et al. (2013) sought to identify the ecological causes of morphological evolution in three-spined sticklebacks Gasterosteus aculeatus, by examining phenotypic and environmental variation between populations on the island of North Uist, Scotland. However, by using simple qualitative assessments of phenotype and inappropriate measures of environmental variation, Spence et al. have come to a conclusion that is diametrically opposite to that which we have arrived at in studying the same populations. Our criticisms of their paper are threefold: (1) using a binomial qualitative measure of the variation in stickleback armour ("low" versus "minimal" (i.e., "normal" low-plated freshwater sticklebacks versus spineless and/or plateless fish)) does not represent the full range of phenotypes that can be described by quantitative measures of the individual elements of armour. (2) Their use of unspecified test kits, with a probable accuracy of 4 ppm, may not be accurate in the range of water chemistry on North Uist (1 to 30 ppm calcium). (3) Their qualitative assessment of the abundance of brown trout Salmo trutta as the major predator of sticklebacks does not accurately describe the variation in brown trout abundance that is revealed by catch-per-unit-effort statistics. Repeating Spence et al.'s analysis using our own measurements, we find, in direct contradiction to them, that variation in stickleback bony armour is strongly correlated with variation in trout abundance, and unrelated to variation in the concentration of calcium in the lochs in which they live. Field studies in ecology and evolution seldom address the same question in the same system at the same time, and it is salutary that in this rare instance two such studies arrived at diametrically opposite answers.

Major and trace element modeling of mid-ocean ridge mantle melting from the garnet to the plagioclase stability fields: Generating local and global compositional variability

NASA Astrophysics Data System (ADS)

Brown, S. M.; Behn, M. D.; Grove, T. L.

2017-12-01

We present results of a combined petrologic - geochemical (major and trace element) - geodynamical forward model for mantle melting and subsequent melt modification. The model advances Behn & Grove (2015), and is calibrated using experimental petrology. Our model allows for melting in the plagioclase, spinel, and garnet fields with a flexible retained melt fraction (from pure batch to pure fractional), tracks residual mantle composition, and includes melting with water, variable melt productivity, and mantle mode calculations. This approach is valuable for understanding oceanic crustal accretion, which involves mantle melting and melt modification by migration and aggregation. These igneous processes result in mid-ocean ridge basalts that vary in composition at the local (segment) and global scale. The important variables are geophysical and geochemical and include mantle composition, potential temperature, mantle flow, and spreading rate. Accordingly, our model allows us to systematically quantify the importance of each of these external variables. In addition to discriminating melt generation effects, we are able to discriminate the effects of different melt modification processes (inefficient pooling, melt-rock reaction, and fractional crystallization) in generating both local, segment-scale and global-scale compositional variability. We quantify the influence of a specific igneous process on the generation of oceanic crust as a function of variations in the external variables. We also find that it is unlikely that garnet lherzolite melting produces a signature in either major or trace element compositions formed from aggregated melts, because when melting does occur in the garnet field at high mantle temperature, it contributes a relatively small, uniform fraction (< 10%) of the pooled melt compositions at all spreading rates. Additionally, while increasing water content and/or temperature promote garnet melting, they also increase melt extent, pushing the pooled composition to lower Sm/Yb and higher Lu/Hf.

Diversity of abundance patterns of neutron-capture elements in very metal-poor stars

NASA Astrophysics Data System (ADS)

Aoki, Misa; Aoki, Wako; Ishimaru, Yuhri; Wanajo, Shinya

2014-05-01

Observations of Very Metal-Poor stars indicate that there are at least two sites to r-process; "weak r-process" and "main r-process". A question is whether these two are well separated or there exists a variation in the r-process. We present the results of abundance analysis of neutron-capture elements in the two Very Metal-Poor stars HD107752 and HD110184 in the Milky Way halo observed with the Subaru Telescope HDS. The abundance patterns show overabundace at light n-capture elements (e.g. Sr, Y), inferring the element yielding of weak r-process, while heavy neutron-capture elements (e.g. Ba, Eu) are deficient; however, the overabundance of light ones is not as significant as that previously found in stars representing the weak r-process (e.g. HD122563; Honda et al. 2006). Our study show diversity in the abundance patterns from light to heavy neutron-capture elements in VMP stars, suggesting a variation in r-process, which may depend on electron fraction of environment.

Cathedral Peak Granodiorite, Sierra Nevada Batholith, California: A Big, Mushy, Magma System?

NASA Astrophysics Data System (ADS)

Burgess, S. D.; Miller, J. S.; Matzel, J. P.

2006-12-01

The Cathedral Peak Granodiorite (Kcp) is the largest mapped unit of the >1200 km2 Tuolumne Batholith (TB), which is one of a belt of Cretaceous zoned intrusions within the Sierra Nevada Batholith. Previous workers [1,2] proposed that the zonation in the TB was mainly produced in-situ either by inward differentiation of a large mass of magma and/or large-scale magma mixing between compositionally distinct map units. Recent geochronology has shown that the entire TB was intruded over 8-9 Ma, leading to the hypothesis that it was constructed continuously over this time period by many small increments [3], with variations in chemical and isotopic composition attributed to processes in the melt source. This hypothesis is also supported by scatter in trace elements vs. longitude from the margins to inner TB and appreciable variability in Nd and Sr isotopic data between the mapped units of the TB [e.g., 4]. Thus attributing chemical variations between major intrusive units to simple closed system fractionation or binary magma mixing is precluded. New field, geochemical and geochronologic work along a 5 km transect from the porphyritic Half Dome Granodiorite (Khdp) margin to the innermost Kcp, and approximately perpendicular to the Kcp-Khdp contact shows that: (1) magmatic foliation is moderately- to steeply-dipping (>60°); (2) zircon ages at each end of the transect are indistinguishable; (3) bulk composition varies only modestly but trace elements show variable degrees of scatter with greatest scatter observed among feldspar-compatible and highly incompatible elements (Sr, Ba, Th); (5) ɛNd(t) is invariant (Sr(i) has small variation); (6) abundant field evidence for transport and mixing of melt and crystals is observed (multiple generations of steep planar, tube- like, and chaotically folded schlieren, rafts and monomineralic clusters of K-feldspar, irregular and mingled contacts between sheets of texturally variable granite and schlieren). The broad geochemical and isotopic data are consistent with bulk fractionation in the Cathedral Peak Granodiorite. However, the geochemical spatial variation (especially trace elements) and field evidence suggest that fractionation was highly disorganized and involved mixing and remobilization of crystal mush as it solidified, possibly triggered by new inputs of isotopically uniform magma (i.e., recharge from the magma source). These data and observations are consistent with construction of a large, and dynamic but mushy magmatic system within the last 1 Ma of the total 9 Ma TB intrusion interval. [1] Bateman, PC & Chappell BW (1979) Geol Soc Am Bull, Part I 90:465-482; [2] Reid, JB, Evans, OC & Fates DG (1983) Earth Planet Sci Letters, 66:243-261; [3] Coleman, DS, Gray, W & Glazner, AF (2004) Geology, 32:433-436; [4] Kistler, RW, Chappell, BW, Peck, DL & Bateman, PC (1986) Contrib Min Pet, 94:205-220;

The Crystal Stratigraphy of Ontong Java Plateau Plagioclase Pegacrysts: New Insights into the Evolution of LIP Magmas.

NASA Astrophysics Data System (ADS)

Neal, C. R.; Kinman, W. S.

2003-12-01

The Ontong Java Plateau (OJP) is the world's largest LIP made up of 2 isotopically distinct lava types that comprise the Singgalo and Kwaimbaita formations (Tejada et al., 2002, J.Pet 43:449). Some Kwaimbaita basaltic flows contain plagioclase-rich cumulate xenoliths. As plagioclase is stable over a range of magmatic conditions, microanalysis of this phase allows the evolution of the parent magma(s) to be constrained (cf. Davidson & Tepley, 1997, Science 275:826). This crystal stratigraphy approach has been applied to cm-size plagioclase megacrysts from three basaltic units (5B, 6, and 7) recovered at ODP Leg 192 Site 1183. Core-to-rim trace element variations were quantified by LA-ICP-MS, major elements by EPMA, and compositional backscatter SEM imaging was used to investigate the subtle compositional zoning and textural features within the plagioclases. All 5 OJP megacrysts sampled show little core-to-rim anorthite variation (82 mol % An +/- 5%); An-rich plagioclase crystals are resistant to re-equilibration and are more likely to retain magmatic trace element signatures (Blundy & Wood, 1991, GCA 55:193). The Unit 7 (oldest) plagioclase contains a relatively Sr, Ga, REE, and Ti poor core bounded by a resorption surface and a relatively Sr, Ga, REE, and Ti rich zone suggesting this crystal was exposed to 2 compositionally distinct magmas. The Unit 6 plagioclase contains a relatively Sr, Ga, REE, and Ti poor core with increasing abundances toward the rim, consistent with evolution through fractional crystallization. This megacryst also contains a distinct resorption surface bounded by a core-like Sr, REE, and Ti poor zone. The three Unit 5B plagioclases display core-to-rim Sr and Ba increases with little core-to-rim REE and Ga variations. The uppermost Unit 5B crystal (youngest) exhibits a core-to-rim decrease in Ti, while the lower 2 crystals display the opposite relationship. We suggest the textural and trace element variations seen in OJP plagioclase megacrysts are again evidence of magma mixing. Reconstructed liquids suggest at least two distinct mixing end members: an enriched end member, similar to Singgalo-type lavas, and a depleted end member, similar to Kwaimbaita type lavas. As the Singgalo- and Kwaimbaita-type basalts are isotopically distinct (I(Sr) = 0.7041 and 0.7038, resp.), Sr isotope determinations of the different plagioclase zones through microdrilling is planned for the near future to test this hypothesis. If correct, it suggests that both the Kwaimbaita and Singgalo sources were active at the same time, which is in contrast to the stratigraphy determined by whole-rock compositions.

Geographic patterns of elemental deposition in the Aegean region of Turkey indicated by the lichen, Xanthoria parietina (L.) Th. Fr.

PubMed

Yenisoy-Karakaş, S; Tuncel, S G

2004-08-15

Lichen samples from different parts of the world have been known to accumulate elements to a greater degree than higher plants, if they are exposed to these elements from the atmosphere or from water and sediments. It has been hypothesized that lichens can be used to monitor air pollution around point and area emission sources. Local variation (variation in substrate, age and morphology of lichen samples) of element concentrations would not be large enough to affect the concentration patterns in large areas. We tested this hypothesis in the Aegean region of Turkey, which is very urbanized and industrialized. No such study has been conducted before in this part of the country. A total of 234 samples of the lichen Xanthoria parietina were collected from a 51,800-km2 area. Samples were washed and analyzed by INAA and ICP-AES for 35 elements. The range of the concentrations for most of the elements on a local scale was an order of magnitude lower than for the element concentrations on a regional scale. The mean local coefficient of variance (CV) was found to be 15, providing that the local variation did not affect the concentration of elements in the sampling region. According to cluster analysis, 8 (As, Hg, Pb, Sb, Fe, Mn, Na and K) elements are indicative of important local pollution locations and their zone of impact in the region. By mapping the concentrations of eight indicative elements in lichen Xanthoria parietina of the Aegean region, it was possible to relate deposition to the existence of known sources of pollution in certain areas. Location of pollution sources such as iron-steel plants, and coal burning in the cities, industrial activity and two important coal-fired power plants generally corresponded with locations of highest element accumulations in the lichens.

Variation in information needs and quality: implications for public health surveillance and biomedical informatics.

PubMed

Dixon, Brian E; Lai, Patrick T S; Grannis, Shaun J

2013-01-01

Understanding variation among users' information needs and the quality of information in an electronic system is important for informaticians to ensure data are fit-for-use in answering important questions in clinical and public health. To measure variation in satisfaction with currently reported data, as well as perceived importance and need with respect to completeness and timeliness, we surveyed epidemiologists and other public health professionals across multiple jurisdictions. We observed consensus for some data elements, such as county of residence, which respondents perceived as important and felt should always be reported. However information needs differed for many data elements, especially when comparing notifiable diseases such as chlamydia to seasonal (influenza) and chronic (diabetes) diseases. Given the trend towards greater volume and variety of data as inputs to surveillance systems, variation of information needs impacts system design and practice. Systems must be flexible and highly configurable to accommodate variation, and informaticians must measure and improve systems and business processes to accommodate for variation of both users and information.

Pole-equator difference and the variability of the brightness of the chromospheric CaII-K-network elements in quiet regions over the solar cycle

NASA Technical Reports Server (NTRS)

Kariyappa, R.

1995-01-01

The dependence of the brightness of chromospheric network elements on latitude was investigated for quiet solar regions. Calibrated photographic CaII K-spectroheliograms were used to compare the variation in brightness at the center of the disk with higher latitude of chromospheric network elements in a quiet region as a function of solar activity. It was found that there was no significant difference in brightness between the center of the solar disk and higher latitude. It is concluded that the brightness of the chromospheric network elements in a quiet region does not depend on the latitude, but that the variation in the intensity enhancement is related to the level of solar activity.

Experimental performance of an internal resistance heater for Langley 6-inch expansion tube driver

NASA Technical Reports Server (NTRS)

Creel, T. R., Jr.

1972-01-01

An experimental investigation of the heating characteristics of an internal resistance heating element was conducted in the driver of the Langley 6-inch expansion tube to obtain actual operating conditions, to compare these results to theory, and to determine whether any modification need be made to the heater element. The heater was operated in pressurized helium from 138. MN/sq m to 62.1 MN/sq m. This investigation revealed large temperature variations within the heater element caused primarily by area reductions at insulator locations. These large temperature variations were reduced by welding small tabs over all grooves. Previous predictions of heater element and driver gas temperature were unacceptable so new equations were derived. These equations predict element and gas temperature within 10 percent of the test data when either the constant power cycle or the interrupted power cycle is used. Visual observation of the heater element, when exposed to the atmosphere with power on, resulted in a decision to limit the heater element to 815 K. Experimental shock Mach numbers are in good agreement with theory.

Open-water and under-ice seasonal variations in trace element content and physicochemical associations in fluvial bed sediment.

PubMed

Doig, Lorne E; Carr, Meghan K; Meissner, Anna G N; Jardine, Tim D; Jones, Paul D; Bharadwaj, Lalita; Lindenschmidt, Karl-Erich

2017-11-01

Across the circumpolar world, intensive anthropogenic activities in the southern reaches of many large, northward-flowing rivers can cause sediment contamination in the downstream depositional environment. The influence of ice cover on concentrations of inorganic contaminants in bed sediment (i.e., sediment quality) is unknown in these rivers, where winter is the dominant season. A geomorphic response unit approach was used to select hydraulically diverse sampling sites across a northern test-case system, the Slave River and delta (Northwest Territories, Canada). Surface sediment samples (top 1 cm) were collected from 6 predefined geomorphic response units (12 sites) to assess the relationships between bed sediment physicochemistry (particle size distribution and total organic carbon content) and trace element content (mercury and 18 other trace elements) during open-water conditions. A subset of sites was resampled under-ice to assess the influence of season on these relationships and on total trace element content. Concentrations of the majority of trace elements were strongly correlated with percent fines and proxies for grain size (aluminum and iron), with similar trace element grain size/grain size proxy relationships between seasons. However, finer materials were deposited under ice with associated increases in sediment total organic carbon content and the concentrations of most trace elements investigated. The geomorphic response unit approach was effective at identifying diverse hydrological environments for sampling prior to field operations. Our data demonstrate the need for under-ice sampling to confirm year-round consistency in trace element-geochemical relationships in fluvial systems and to define the upper extremes of these relationships. Whether contaminated or not, under-ice bed sediment can represent a "worst-case" scenario in terms of trace element concentrations and exposure for sediment-associated organisms in northern fluvial systems. Environ Toxicol Chem 2017;36:2916-2924. © 2017 SETAC. © 2017 SETAC.

Spatiotemporal distribution of airborne elements monitored with the moss bags technique in the Greater Thriasion Plain, Attica, Greece.

PubMed

Saitanis, C J; Frontasyeva, M V; Steinnes, E; Palmer, M W; Ostrovnaya, T M; Gundorina, S F

2013-01-01

The well-known moss bags technique was applied in the heavily polluted Thriasion Plain region, Attica, Greece, in order to study the spatiotemporal distribution, in the atmosphere, of the following 32 elements: Na, Al, Cl, Ca, Sc, Ti, V, Cr, Mn, Fe, Ni, Co, Zn, As, Se, Br, Sr, Mo, Sb, I, Ba, La, Ce, Sm, Tb, Dy, Yb, Hf, Ta, Hg, Th, and U. The moss bags were constituted of Sphagnum girgensohnii materials. The bags were exposed to ambient air in a network of 12 monitoring stations scattered throughout the monitoring area. In order to explore the temporal variation of the pollutants, four sets of moss bags were exposed for 3, 6, 9, and 12 months. Instrumental neutral activation analysis was used for the determinations of the elements. The data were analyzed using the Pearson correlations, the partial redundancy analysis, and the biplot statistical methods. Some pairs of elements were highly correlated indicating a probable common source of origin. The levels of the measured pollutants were unevenly distributed throughout the area and different pollutants exhibited different spatial patterns. In general, higher loads were observed in the stations close to and within the industrial zone. Most of the measured elements (e.g., Al, Ca, Ni, I, Zn, Cr, and As) exhibited a monotonic accumulation trend over time. Some elements exhibited different dynamics. The elements Mn, Mo, and Hg showed a decreasing trend, probably due to leaching and/or volatilization processes over time. Na and Br initially showed an increasing trend during the winter and early spring periods but decreased drastically during the late warm period. The results further suggest that the moss bags technique would be considered valuable for the majority of elements but should be used with caution in the cases of elements vulnerable to leaching and/or volatilization. It also suggests that the timing and the duration of the exposure of moss materials should be considered in the interpretation of the results.

Secondary flow spanwise deviation model for the stators of NASA middle compressor stages

NASA Technical Reports Server (NTRS)

Roberts, W. B.; Sandercock, D. M.

1984-01-01

A model of the spanwise variation of deviation for stator blades is presented. Deviation is defined as the difference between the passage mean flow angle and the metal angle at the outlet of a blade element of an axial compressor stage. The variation of deviation is taken as the difference above or below that predicted by blade element, (i.e., two-dimensional) theory at any spanwise location. The variation of deviation is dependent upon the blade camber, solidity and inlet boundary layer thickness at the hub or tip end-wall, and the blade channel aspect ratio. If these parameters are known or can be calculated, the model provides a reasonable approximation of the spanwise variation of deviation for most compressor middle stage stators operating at subsonic inlet Mach numbers.

A Temperature-Based Gain Calibration Technique for Precision Radiometry

NASA Astrophysics Data System (ADS)

Parashare, Chaitali Ravindra

Detecting extremely weak signals in radio astronomy demands high sensitivity and stability of the receivers. The gain of a typical radio astronomy receiver is extremely large, and therefore, even very small gain instabilities can dominate the received noise power and degrade the instrument sensitivity. Hence, receiver stabilization is of prime importance. Gain variations occur mainly due to ambient temperature fluctuations. We take a new approach to receiver stabilization, which makes use of active temperature monitoring and corrects for the gain fluctuations in post processing. This approach is purely passive and does not include noise injection or switching for calibration. This system is to be used for the Precision Array for Probing the Epoch of Reionization (PAPER), which is being developed to detect the extremely faint neutral hydrogen (HI) signature of the Epoch of Reionization (EoR). The epoch of reionization refers to the period in the history of the Universe when the first stars and galaxies started to form. When there are N antenna elements in the case of a large scale array, all elements may not be subjected to the same environmental conditions at a given time. Hence, we expect to mitigate the gain variations by monitoring the physical temperature of each element of the array. This stabilization approach will also benefit experiments like EDGES (Experiment to Detect the Global EoR Signature) and DARE (Dark Ages Radio Explorer), which involve a direct measurement of the global 21 cm signal using a single antenna element and hence, require an extremely stable system. This dissertation focuses on the development and evaluation of a calibration technique that compensates for the gain variations caused due to temperature fluctuations of the RF components. It carefully examines the temperature dependence of the components in the receiver chain. The results from the first-order field instrument, called a Gainometer (GoM), highlight the issue with the cable temperature which varies significantly with different climatic conditions. The model used to correct for gain variations is presented. We describe the measurements performed to verify the model. RFI is a major issue at low frequencies, which makes these kind of measurements extremely challenging. We discuss the careful measures required to mitigate the errors due to the unwanted interference. In the case of the laboratory measurements, the model follows closely with the measured power, and shows an improvement in the gain stability by a factor of ˜ 46, when the corrections are applied. The gain stability (rms to mean) improves from 1 part in 32 to 1 part in 1500. The field measurements suggest that correcting for cable temperature variations is challenging. The improvement in the gain stability is by a factor of ˜ 4.3, when the RF front end components are situated out in the field. The results are analyzed using the statistical methods such as the standard error of the mean, the run test, skewness, and kurtosis. These tests demonstrate the normal distribution of the process when the corrections are applied and confirm an effective gain bias removal. The results obtained from the sky observation using a single antenna element are compared before and after applying the corrections. Several days data verify that the power fluctuations are significantly reduced after the gain corrections are applied.

LSST summit facility construction progress report: reacting to design refinements and field conditions

NASA Astrophysics Data System (ADS)

Barr, Jeffrey D.; Gressler, William; Sebag, Jacques; Seriche, Jaime; Serrano, Eduardo

2016-07-01

The civil work, site infrastructure and buildings for the summit facility of the Large Synoptic Survey Telescope (LSST) are among the first major elements that need to be designed, bid and constructed to support the subsequent integration of the dome, telescope, optics, camera and supporting systems. As the contracts for those other major subsystems now move forward under the management of the LSST Telescope and Site (T and S) team, there has been inevitable and beneficial evolution in their designs, which has resulted in significant modifications to the facility and infrastructure. The earliest design requirements for the LSST summit facility were first documented in 2005, its contracted full design was initiated in 2010, and construction began in January, 2015. During that entire development period, and extending now roughly halfway through construction, there continue to be necessary modifications to the facility design resulting from the refinement of interfaces to other major elements of the LSST project and now, during construction, due to unanticipated field conditions. Changes from evolving interfaces have principally involved the telescope mount, the dome and mirror handling/coating facilities which have included significant variations in mass, dimensions, heat loads and anchorage conditions. Modifications related to field conditions have included specifying and testing alternative methods of excavation and contending with the lack of competent rock substrate where it was predicted to be. While these and other necessary changes are somewhat specific to the LSST project and site, they also exemplify inherent challenges related to the typical timeline for the design and construction of astronomical observatory support facilities relative to the overall development of the project.

Major chemical characteristics of Mesozoic Coast Range ophiolite in California

USGS Publications Warehouse

Bailey, E.H.; Blake, Jr., M.C.

1974-01-01

Sixty-four major element analyses of rocks representative of the Coast Range ophiolite in California were compared with analyses of other onland ophiolite sequences and those of rocks from oceanic ridges. The rocks can be classed in five groups harzburgite-dunite, clinopyroxenite-wehrlite, gabbro, basalt-spilite, and keratophyre-quartz keratophyre which on various diagrams occupy nonoverlapping fields. The harzburgite-dunite from onland ophiolite and ocean ridges are comparable and very low in alkalies. Possible differentiation trends defined on AFM diagrams by other rocks from onland ophiolites and ocean ridges suggest two lines of descent: (1) A trend much like the calc-alkalic trend, though shifted somewhat toward higher iron, and (2) an iron-enrichment trend defined chiefly by the more iron-rich gabbros and amphibolite. MgO-variation diagrams for rocks from the Coast Range ophiolite further distinguish the iron-rich gabbros and amphibolite from the other rock groups and indicate that the iron enrichment, unlike that of the Skaergaard trend, is related to the formation of amphibole. Ophiolite sequences that include the most silicic rock types, such as quartz keratophyre, also exhibit the most pronounced dual lines of descent, suggesting that the silicic rocks and the amphibole-rich gabbros are somehow related. Although the major element chemistry of the Coast Range ophiolite is clearly like that of rocks dredged from oceanic ridges, it is not sufficiently diagnostic to discriminate among the choices of a spreading ridge, an interarc basin, or perhaps even the root zone of an island arc as the site of ophiolite formation.

Effects of Ankle Arthrodesis on Biomechanical Performance of the Entire Foot

PubMed Central

Wang, Yan; Li, Zengyong; Wong, Duo Wai-Chi; Zhang, Ming

2015-01-01

Background/Methodology Ankle arthrodesis is one popular surgical treatment for ankle arthritis, chronic instability, and degenerative deformity. However, complications such as foot pain, joint arthritis, and bone fracture may cause patients to suffer other problems. Understanding the internal biomechanics of the foot is critical for assessing the effectiveness of ankle arthrodesis and provides a baseline for the surgical plan. This study aimed to understand the biomechanical effects of ankle arthrodesis on the entire foot and ankle using finite element analyses. A three-dimensional finite element model of the foot and ankle, involving 28 bones, 103 ligaments, the plantar fascia, major muscle groups, and encapsulated soft tissue, was developed and validated. The biomechanical performances of a normal foot and a foot with ankle arthrodesis were compared at three gait instants, first-peak, mid-stance, and second-peak. Principal Findings/Conclusions Changes in plantar pressure distribution, joint contact pressure and forces, von Mises stress on bone and foot deformation were predicted. Compared with those in the normal foot, the peak plantar pressure was increased and the center of pressure moved anteriorly in the foot with ankle arthrodesis. The talonavicular joint and joints of the first to third rays in the hind- and mid-foot bore the majority of the loading and sustained substantially increased loading after ankle arthrodesis. An average contact pressure of 2.14 MPa was predicted at the talonavicular joint after surgery and the maximum variation was shown to be 80% in joints of the first ray. The contact force and pressure of the subtalar joint decreased after surgery, indicating that arthritis at this joint was not necessarily a consequence of ankle arthrodesis but rather a progression of pre-existing degenerative changes. Von Mises stress in the second and third metatarsal bones at the second-peak instant increased to 52 MPa and 34 MPa, respectively, after surgery. These variations can provide indications for outcome assessment of ankle arthrodesis surgery. PMID:26222188

Use of enzymatic tools for biomonitoring inorganic pollution in aquatic sediments: a case study (Bor, Serbia)

PubMed Central

2013-01-01

Background Sediment bacterial communities are key players in biogeochemical cycling of elements in the aquatic environment. Copper mining, smelting, and processing operations located in Bor area (Serbia) are major environmental hot spots in the lower Danube Basin and Western Balkans. In the present study, we evaluate the influence of trace element (TE) concentration in sediments and physico-chemical properties of water on sediment microbial communities in water streams adjacent to the Copper Smelter Complex Bor (RTB Bor, Serbia). The degree to which metabolic activities of bacterial biota inhabiting differently polluted sites is inhibited by inorganic pollution were compared using selected enzymatic bioindicators. Results Cu, Zn, Pb, and As concentrations systematically exceeded the target values for metal loadings in aquatic sediments. Water electrical conductivity (WEC) followed the same pattern of spatial variation, irrespective of season. Interestingly, the most intense enzymatic activity occurred at the reference site although this site showed the greatest TE levels in aquatic sediments. Catalase activity (CA), potential dehydrogenase activity (PDA), actual dehydrogenase activity (ADA), urease activity (UA), and phosphatase activity (PA) in aquatic sediments displayed heterogeneous patterns of spatio-temporal variation. Inorganic pollution greatly affected CA, ADA, and PDA, but much less so UA and PA. Canonical correlation analysis showed that pH and WEC were the strongest determinants of enzymatic activity in bacterial biota, with the latter variable being reversely correlated with the enzymatic indicator of sediment quality (EISQ). The median values of EISQ increased with distance from the major sources of pollution. In addition, it was found that sites with different degrees of inorganic pollution can be appropriately classified by applying cluster analysis to EISQ, TE levels in sediments, and physico-chemical properties of water. Conclusions Because EISQ can precisely identify changes in overall enzymatic activity of sediment bacterial communities, this enzymatic bioindicator has a great potential for biomonitoring the current status of inorganic pollution in aquatic ecosystems. PMID:23536970

Petrology, geochemistry and LA-ICP-MS U-Pb geochronology of Paleoproterozoic basement rocks in Bangladesh: An evaluation of calc-alkaline magmatism and implication for Columbia supercontinent amalgamation

NASA Astrophysics Data System (ADS)

Hossain, Ismail; Tsunogae, Toshiaki; Tsutsumi, Yukiyasu; Takahashi, Kazuki

2018-05-01

The Paleoproterozoic (1.7 Ga) basement rocks from Maddhapara, Bangladesh show a large range of chemical variations (e.g. SiO2 = 50.7-74.7%) and include diorite, quartz diorite, monzodiorite, quartz monzonite and granite. The pluton overall displays metaluminous, calc-alkaline orogenic suite; mostly I-type suites formed within subduction-related magmatism. The observed major elements show general trends for fractional crystallization. Trace element contents also indicate the possibility of a fractionation or assimilation; explain the entire variation from diorite to monzonite, even granite. The pluton may have evolved the unique chemical features by a process that included partial melting of calc-alkaline lithologies and mixing of mantle-derived magmas, followed by fractional crystallization, and by assimilation of country rocks. The pluton shows evidence of crystal fractionation involving largely plagioclase, amphibole and possibly biotite. Some of the fractionated magmas may have mixed with more potassic melts from distinct parts of the continental lithosphere to produce granites and/or pegmatites. New geochronological results of granitic pegmatite (1722 ± 10 Ma) are indisputably consistent with diorite and tonalite and those data showing credible geochronological sequence (i.e., diorite - tonalite - granitic pegmatite). Identical Paleoproterozoic age (1.7 Ga) with distinctive magmatism of the Maddhapara basement rocks have agreeable relationship with the CITZ, India. The consistent magmatism is also common in the Transamazonian of South America, Trans-Hudson orogeny in North America, Bohemian Massif and the Svecofennian, Poland, have identified the sequential growth of the continent through the amalgamation of juvenile terrains, succeeded by a major collisional orogeny. Such Paleoproterozoic subduction-related orogens in Australia have similar counterparts in Antarctica and other part of the world. These types of Paleoproterozoic magmatism dominantly contributed to assemble, amalgamation and breakup of the enormous Columbia supercontinent.

Effects of Ankle Arthrodesis on Biomechanical Performance of the Entire Foot.

PubMed

Wang, Yan; Li, Zengyong; Wong, Duo Wai-Chi; Zhang, Ming

2015-01-01

Ankle arthrodesis is one popular surgical treatment for ankle arthritis, chronic instability, and degenerative deformity. However, complications such as foot pain, joint arthritis, and bone fracture may cause patients to suffer other problems. Understanding the internal biomechanics of the foot is critical for assessing the effectiveness of ankle arthrodesis and provides a baseline for the surgical plan. This study aimed to understand the biomechanical effects of ankle arthrodesis on the entire foot and ankle using finite element analyses. A three-dimensional finite element model of the foot and ankle, involving 28 bones, 103 ligaments, the plantar fascia, major muscle groups, and encapsulated soft tissue, was developed and validated. The biomechanical performances of a normal foot and a foot with ankle arthrodesis were compared at three gait instants, first-peak, mid-stance, and second-peak. Changes in plantar pressure distribution, joint contact pressure and forces, von Mises stress on bone and foot deformation were predicted. Compared with those in the normal foot, the peak plantar pressure was increased and the center of pressure moved anteriorly in the foot with ankle arthrodesis. The talonavicular joint and joints of the first to third rays in the hind- and mid-foot bore the majority of the loading and sustained substantially increased loading after ankle arthrodesis. An average contact pressure of 2.14 MPa was predicted at the talonavicular joint after surgery and the maximum variation was shown to be 80% in joints of the first ray. The contact force and pressure of the subtalar joint decreased after surgery, indicating that arthritis at this joint was not necessarily a consequence of ankle arthrodesis but rather a progression of pre-existing degenerative changes. Von Mises stress in the second and third metatarsal bones at the second-peak instant increased to 52 MPa and 34 MPa, respectively, after surgery. These variations can provide indications for outcome assessment of ankle arthrodesis surgery.

Onboard calibration igneous targets for the Mars Science Laboratory Curiosity rover and the Chemistry Camera laser induced breakdown spectroscopy instrument

NASA Astrophysics Data System (ADS)

Fabre, C.; Maurice, S.; Cousin, A.; Wiens, R. C.; Forni, O.; Sautter, V.; Guillaume, D.

2011-03-01

Accurate characterization of the Chemistry Camera (ChemCam) laser-induced breakdown spectroscopy (LIBS) on-board composition targets is of prime importance for the ChemCam instrument. The Mars Science Laboratory (MSL) science and operations teams expect ChemCam to provide the first compositional results at remote distances (1.5-7 m) during the in situ analyses of the Martian surface starting in 2012. Thus, establishing LIBS reference spectra from appropriate calibration standards must be undertaken diligently. Considering the global mineralogy of the Martian surface, and the possible landing sites, three specific compositions of igneous targets have been determined. Picritic, noritic, and shergottic glasses have been produced, along with a Macusanite natural glass. A sample of each target will fly on the MSL Curiosity rover deck, 1.56 m from the ChemCam instrument, and duplicates are available on the ground. Duplicates are considered to be identical, as the relative standard deviation (RSD) of the composition dispersion is around 8%. Electronic microprobe and laser ablation inductively coupled plasma mass spectrometry (LA ICP-MS) analyses give evidence that the chemical composition of the four silicate targets is very homogeneous at microscopic scales larger than the instrument spot size, with RSD < 5% for concentration variations > 0.1 wt.% using electronic microprobe, and < 10% for concentration variations > 0.01 wt.% using LA ICP-MS. The LIBS campaign on the igneous targets performed under flight-like Mars conditions establishes reference spectra for the entire mission. The LIBS spectra between 240 and 900 nm are extremely rich, hundreds of lines with high signal-to-noise, and a dynamical range sufficient to identify unambiguously major, minor and trace elements. For instance, a first LIBS calibration curve has been established for strontium from [Sr] = 284 ppm to [Sr] = 1480 ppm, showing the potential for the future calibrations for other major or minor elements.

Volcanic Evolution in the Galapagos: The Geochemistry and Petrology of Espanola Island

NASA Astrophysics Data System (ADS)

McGuire, M.; Varga, K. C.; Harpp, K. S.; Geist, D.; Hall, M. L.

2015-12-01

The Galapagos Archipelago consists of a series of volcanic islands located ~1,000 km west of South America that are thought to be the result of a mantle plume. The southeasternmost island, Espanola, is one of the smallest of the major islands, measuring only 7 by 14 km and reaching an elevation of 200 m. Espanola is also the oldest island in the chain, with K-Ar dates from 3.01 ± 0.11 to 3.31 ± 0.36 million years (Hall et al. 1983; White et al., 1993). The southern coast is defined by cliffs that exceed 100 m in height, made up of nearly flat-lying lavas that are each several meters thick. The northern coastline consists of lavas that dip gently toward the ocean from the highlands, as well as remnants of eroded cinder cones. Paleomagnetic measurements made in the field indicate that the western half of the island is reversely polarized, whereas most lavas measured across the eastern half are normally polarized. Major element analyses of samples from across the island indicate that fractional crystallization is the dominant process controlling chemical variations in Espanola lavas, suggesting a relatively long-lived magmatic plumbing system. Stratigraphically constrained chemical variations suggest the magma chamber may have experienced periodic replenishment by compositionally homogeneous primitive melts. Variable fluid-mobile trace element concentrations provide some evidence for contributions from ancient, recycled oceanic crust to the parental melts. Espanola lavas have more depleted Sr and Pb radiogenic isotope ratios than either Floreana or Fernandina, and lie on a mixing curve between the composition of the plume and that of the depleted upper mantle. Between ~3 and 8 Ma, the Galapagos Spreading Center was closer to the Galapagos plume than it is today. Given that Espanola was constructed during the same period, the depleted isotopic signatures suggest that plume-ridge interaction may have been a strong influence on the island's geochemical composition.

Responses of infaunal populations to benthoscape structure and the potential importance of transition zones

USGS Publications Warehouse

Zajac, R.N.; Lewis, R.S.; Poppe, L.J.; Twichell, D.C.; Vozarik, J.; DiGiacomo-Cohen, M. L.

2003-01-01

Relationships between population abundance and seafloor landscape, or benthoscape, structure were examined for 16 infaunal taxa in eastern Long Island Sound. Based on analyses of a side-scan sonar mosaic, the 19.4-km2 study area was comprised of six distinct large-scale (> km2) benthoscape elements, with varying levels of mesoscale (km2-m2) and small-scale (2) physical and biological habitat heterogeneity. Transition zones among elements varied from ~50 to 200 m in width, comprised ~32% of the benthoscape, and added to overall benthoscape heterogeneity. Population abundances of nine taxa varied significantly among the large-scale elements. Most species were found at high abundances only in one benthoscape element, but three had several foci of elevated abundances. Analyses of population responses to habitat heterogeneity at different spatial scales indicated that abundances of eight taxa varied significantly among spatial scales, but the significant scales were mixed among these species. Relatively large residual variations suggest significant amounts of mesoscale spatial variation were unaccounted for, varying from ~1 km2 to several m2. Responses to transition zones were mixed as well. Abundances of nine taxa varied significantly among transition zones and interiors of benthoscape elements, most with elevated abundances in transition zones. Our results show that infaunal populations exhibit complex and spatially varying patterns of abundance in relation to benthoscape structure and suggest that mesoscale variation may be particularly critical in this regard. Also, transition zones among benthoscape features add considerably to this variation and may be ecological important areas in seafloor environments.

Variation in conserved non-coding sequences on chromosome 5q andsusceptibility to asthma and atopy

DOE Office of Scientific and Technical Information (OSTI.GOV)

Donfack, Joseph; Schneider, Daniel H.; Tan, Zheng

2005-09-10

Background: Evolutionarily conserved sequences likely havebiological function. Methods: To determine whether variation in conservedsequences in non-coding DNA contributes to risk for human disease, westudied six conserved non-coding elements in the Th2 cytokine cluster onhuman chromosome 5q31 in a large Hutterite pedigree and in samples ofoutbred European American and African American asthma cases and controls.Results: Among six conserved non-coding elements (>100 bp,>70percent identity; human-mouse comparison), we identified one singlenucleotide polymorphism (SNP) in each of two conserved elements and sixSNPs in the flanking regions of three conserved elements. We genotypedour samples for four of these SNPs and an additional three SNPs eachmore » inthe IL13 and IL4 genes. While there was only modest evidence forassociation with single SNPs in the Hutterite and European Americansamples (P<0.05), there were highly significant associations inEuropean Americans between asthma and haplotypes comprised of SNPs in theIL4 gene (P<0.001), including a SNP in a conserved non-codingelement. Furthermore, variation in the IL13 gene was strongly associatedwith total IgE (P = 0.00022) and allergic sensitization to mold allergens(P = 0.00076) in the Hutterites, and more modestly associated withsensitization to molds in the European Americans and African Americans (P<0.01). Conclusion: These results indicate that there is overalllittle variation in the conserved non-coding elements on 5q31, butvariation in IL4 and IL13, including possibly one SNP in a conservedelement, influence asthma and atopic phenotypes in diversepopulations.« less

Evidence of Himalayan uplift as seen in Neogene records of Indian monsoon variability from ODP Hole 722B, NW Arabian Sea

NASA Astrophysics Data System (ADS)

Muthusamy, Prakasam; Gupta, Anil K.; Saini, Naresh K.

2013-04-01

The Indian monsoon is one of the most interesting climatic features on Earth impacting most populous countries of South and East Asia. It is marked by seasonal reversals of wind direction with southwesterly winds in summer (June-September) and northeasterly winds in winter (December-February). The monsoon not only impacts socioeconomic conditions of Asia but also brings important changes in fauna and flora, ocean upwelling and primary productivity in the Arabian Sea. The Himalaya has undergone several phases of rapid uplift and exhumation since the early Miocene which led to major intensification of the Indian monsoon. The monsoon is driven by the thermal contrast between land and sea, and is intimately linked with the latitudinal movement of the Inter-Tropical Convergence Zone (ITCZ). The effect of Indian monsoon variability and the Himalayan uplift can be seen in numerous proxy records across the region. In this study we discussed about the Indian monsoon intensification and the Himalayan uplift since the early Miocene based on multi proxy records such as planktic foraminiferal relative abundances (Globigerina bulloides, Globigerinita glutinata and mixed layer species), total organic carbon (TOC), CaCO3 and elemental data from ODP Hole 722B (2028 mbsf), northwestern Arabian Sea. The TOC, CaCO3 and elemental variations of the ODP Hole 722B suggest multi phase of monsoonal intensification and Himalayan uplifts. Our results suggest that in the early Miocene (23.03 Ma) to ~15Ma, the wind strength and productivity were low. A major change is observed at ~15 Ma, during which time numerous proxies show abrupt changes. TOC, CaCO3 and Elemental analyses results reveal that a major change in the productivity, wind strength and chemical weathering starts around 15 Ma and extends up to 10 Ma. This suggests that a major Himalayan uplift occurred during ~15-10 Ma that drove Indian monsoon intensification. A similar change is also observed during 5 to 1 Ma. These long-term paleoclimatic trends correlated to Himalayan uplift. Major peaks in various proxy records correspond with enhanced monsoonal strength and the Himalayan uplift. Keywords: Indian monsoon; Himalayan uplift; Arabian Sea; Productivity; Planktic foraminifera; Total Organic Carbon

Determination of Oriented Strandboard properties from a three-dimensional density distribution using the finite element method

NASA Astrophysics Data System (ADS)

Tackie, Alan Derek Nii

Computer modeling of Oriented Strand Board (OSB) properties has gained widespread attention with numerous models created to better understand OBS behavior. Recent models allow researchers to observe multiple variables such as changes in moisture content, density and resin effects on panel performance. Thickness-swell variation influences panel durability and often has adverse effects on a structural panel's bending stiffness. The prediction of out-of-plane swell under changing moisture conditions was, therefore, the essence for developing a model in this research. The finite element model accounted for both vertical and horizontal density variations, the three-dimensional (3D) density variation of the board. The density variation, resulting from manufacturing processes, affects the uniformity of thickness-swell in OSB and is often exacerbated by continuous sorption of moisture that leads to potentially damaging internal stresses in the panel. The overall thickness-swell (the cumulative swell from non-uniform horizontal density profile, panel swell from free water, and spring-back from panel compression) was addressed through the finite element model in this research. The pursued goals in this study were, first and foremost, the development of a robust and comprehensive finite element model which integrated several component studies to investigate the effects of moisture variation on the out-of-plane thickness-swell of OSB panels, and second, the extension of the developed model to predict panel stiffness. It is hoped that this paper will encourage researchers to adopt the 3D density distribution approach as a viable approach to analyzing the physical and mechanical properties of OSB.

Multi-Elements in Waters and Sediments of Shallow Lakes: Relationships with Water, Sediment, and Watershed Characteristics.

PubMed

Kissoon, La Toya T; Jacob, Donna L; Hanson, Mark A; Herwig, Brian R; Bowe, Shane E; Otte, Marinus L

2015-06-01

We measured concentrations of multiple elements, including rare earth elements, in waters and sediments of 38 shallow lakes of varying turbidity and macrophyte cover in the Prairie Parkland (PP) and Laurentian Mixed Forest (LMF) provinces of Minnesota. PP shallow lakes had higher element concentrations in waters and sediments compared to LMF sites. Redundancy analysis indicated that a combination of site- and watershed-scale features explained a large proportion of among-lake variability in element concentrations in lake water and sediments. Percent woodland cover in watersheds, turbidity, open water area, and macrophyte cover collectively explained 65.2 % of variation in element concentrations in lake waters. Sediment fraction smaller than 63 µm, percent woodland in watersheds, open water area, and sediment organic matter collectively explained 64.2 % of variation in element concentrations in lake sediments. In contrast to earlier work on shallow lakes, our results showed the extent to which multiple elements in shallow lake waters and sediments were influenced by a combination of variables including sediment characteristics, lake morphology, and percent land cover in watersheds. These results are informative because they help illustrate the extent of functional connectivity between shallow lakes and adjacent lands within these lake watersheds.

Multi-Elements in Waters and Sediments of Shallow Lakes: Relationships with Water, Sediment, and Watershed Characteristics

PubMed Central

Jacob, Donna L.; Hanson, Mark A.; Herwig, Brian R.; Bowe, Shane E.; Otte, Marinus L.

2015-01-01

We measured concentrations of multiple elements, including rare earth elements, in waters and sediments of 38 shallow lakes of varying turbidity and macrophyte cover in the Prairie Parkland (PP) and Laurentian Mixed Forest (LMF) provinces of Minnesota. PP shallow lakes had higher element concentrations in waters and sediments compared to LMF sites. Redundancy analysis indicated that a combination of site- and watershed-scale features explained a large proportion of among-lake variability in element concentrations in lake water and sediments. Percent woodland cover in watersheds, turbidity, open water area, and macrophyte cover collectively explained 65.2 % of variation in element concentrations in lake waters. Sediment fraction smaller than 63 µm, percent woodland in watersheds, open water area, and sediment organic matter collectively explained 64.2 % of variation in element concentrations in lake sediments. In contrast to earlier work on shallow lakes, our results showed the extent to which multiple elements in shallow lake waters and sediments were influenced by a combination of variables including sediment characteristics, lake morphology, and percent land cover in watersheds. These results are informative because they help illustrate the extent of functional connectivity between shallow lakes and adjacent lands within these lake watersheds. PMID:26074657

Seasonal variations of trace elements in precipitation at the largest city in Tibet, Lhasa

NASA Astrophysics Data System (ADS)

Guo, Junming; Kang, Shichang; Huang, Jie; Zhang, Qianggong; Tripathee, Lekhendra; Sillanpää, Mika

2015-02-01

Precipitation samples were collected from March 2010 to August 2012 at an urban site in Lhasa, the capital and largest city of Tibet. The volume weighted mean (VWM) concentrations of 17 trace elements in precipitation were higher during the non-monsoon season than in the monsoon season, but inverse seasonal variations occurred for wet deposition fluxes of most of the trace elements. Concentrations for most of trace elements were negatively correlated with precipitation amount, indicating that below-cloud scavenging of trace elements was an important mechanism contributing to wet deposition of these elements. The elements Al, Sc, V, Cr, Mn, Fe, Mn, Ni, and U displayed low crustal enrichment factors (EFs), whereas Co, Cu, Zn, As, Cd Sn, Pb, and Bi showed high EF values in precipitation, suggesting that anthropogenic activities might be important contributors of these elements at Lhasa. However, this present work indicates a much lower anthropogenic emission at Lhasa than in seriously polluted regions. Our study will not only provide insights for assessing the current status of the atmospheric environment in Lhasa but also enhance our understanding for updating the baseline for environmental protection over the Tibetan Plateau.

Variations in elemental composition of several MEV/nucleon ions observed in interplanetary space

NASA Technical Reports Server (NTRS)

Mcguire, R. E.; Vonrosenvinge, T. T.; Reames, D. V.

1985-01-01

Six years of accumulated ISEE-3 and IMP-8 data to study variations in elemental relative abundances among the different populations of energetic ions seen in interplanetary space are surveyed. Evidence suggesting that heavy ion enrichments may be organized by a rigidity scaling factor A/Z over the range H to Fe is presented. Data to support the hypothesis that shock-associated particles are probably accelerated from ambient energetic fluxes are shown.

Along and across arc geochemical variations in NW Central America: Evidence for involvement of lithospheric pyroxenite

NASA Astrophysics Data System (ADS)

Heydolph, Ken; Hoernle, Kaj; Hauff, Folkmar; Bogaard, Paul van den; Portnyagin, Maxim; Bindeman, Ilya; Garbe-Schönberg, Dieter

2012-05-01

The Central American Volcanic Arc (CAVA) has been the subject of intensive research over the past few years, leading to a variety of distinct models for the origin of CAVA lavas with various source components. We present a new model for the NW Central American Volcanic Arc based on a comprehensive new geochemical data set (major and trace element and Sr-Nd-Pb-Hf-O isotope ratios) of mafic volcanic front (VF), behind the volcanic front (BVF) and back-arc (BA) lava and tephra samples from NW Nicaragua, Honduras, El Salvador and Guatemala. Additionally we present data on subducting Cocos Plate sediments (from DSDP Leg 67 Sites 495 and 499) and igneous oceanic crust (from DSDP Leg 67 Site 495), and Guatemalan (Chortis Block) granitic and metamorphic continental basement. We observe systematic variations in trace element and isotopic compositions both along and across the arc. The data require at least three different endmembers for the volcanism in NW Central America. (1) The NW Nicaragua VF lavas require an endmember with very high Ba/(La, Th) and U/Th, relatively radiogenic Sr, Nd and Hf but unradiogenic Pb and low δ18O, reflecting a largely serpentinite-derived fluid/hydrous melt flux from the subducting slab into a depleted N-MORB type of mantle wedge. (2) The Guatemala VF and BVF mafic lavas require an enriched endmember with low Ba/(La, Th), U/Th, high δ18O and radiogenic Sr and Pb but unradiogenic Nd and Hf isotope ratios. Correlations of Hf with both Nd and Pb isotopic compositions are not consistent with this endmember being subducted sediments. Granitic samples from the Chiquimula Plutonic Complex in Guatemala have the appropriate isotopic composition to serve as this endmember, but the large amounts of assimilation required to explain the isotope data are not consistent with the basaltic compositions of the volcanic rocks. In addition, mixing regressions on Nd vs. Hf and the Sr and O isotope plots do not go through the data. Therefore, we propose that this endmember could represent pyroxenites in the lithosphere (mantle and possibly lower crust), derived from parental magmas for the plutonic rocks. (3) The Honduras and Caribbean BA lavas define an isotopically depleted endmember (with unradiogenic Sr but radiogenic Nd, Hf and Pb isotope ratios), having OIB-like major and trace element compositions (e.g. low Ba/(La, Th) and U/Th, high La/Yb). This endmember is possibly derived from melting of young, recycled oceanic crust in the asthenosphere upwelling in the back-arc. Mixing between these three endmember types of magmas can explain the observed systematic geochemical variations along and across the NW Central American Arc.

Using amphibole phenocrysts to track vapor transfer during magma crystallization and transport: An example from Mount St. Helens, Washington

USGS Publications Warehouse

Rowe, M.C.; Kent, A.J.R.; Thornber, C.R.

2008-01-01

In order to evaluate and further constrain models for volatile movement and vapor enrichment of magma stored at shallow levels, amphibole phenocrysts from 2004-2005 Mount St. Helens dacite were analyzed for major and selected trace elements (Li, Cu, Zn, Mn, and REE) and Li isotopes. Several recent studies have examined fluid-mobile trace element abundances in phencryst phases and melt inclusions as a means of tracking volatile movement within subvolcanic magmatic systems, and high Li contents in plagioclase phenocrysts from 1980 and 2004 Mount St. Helens dacites have been interpreted as evidence that shallow magma was fluxed by a Li-bearing vapor phase prior to eruption. In amphibole phenocrysts, Zn and Mn behave compatibly, correlating to FeO* and Al2O3, and show no systematic change with time. In contrast, Li and Cu abundances in amphibole vary by up to 3 orders of magnitude (7.6-1140????g/g and 1.7 to 94????g/g, respectively), and do not generally correlate with either major or trace elements. However, they do correlate moderately well (R2 = 0.54, >> 95% confidence) with each other and show systematic temporal variations that are opposite to those observed for plagioclase, precluding a simple 1-step diffusion model for Li enrichment. We propose a Diffusion-Crystallization Multi-Stage (DCMS) model to explain the temporal variations and co-variations of Li and Cu. In early erupted dacite (October-December 2004) profiles of Li isotopes in conjunction with measured 7Li intensities and core-to-rim increases in Li concentration are characteristic of Li diffusion into the amphiboles, consistent with prior models of plagioclase enrichment. In amphiboles from 2005 dacite, average Li and Cu concentrations are high (??? 260-660????g/g and ??? 29-45????g/g, respectively) and in contrast to amphiboles from earlier-erupted dacite, correlate weakly with Al2O3??wt.%. Amphibole Al2O3 concentrations are an indicator of pressure, with high-Al amphiboles crystallizing at higher pressures, and we suggest that Li and Cu are partitioned into a fluid phase during ascent and crystallization of the magma so that amphiboles crystallizing at lower pressure have correspondingly lower Li and Cu concentrations. However, low Li and Cu in amphiboles from the dacite at the start of the eruption also require crystallization from a low Li-Cu bearing melt or residence times long enough for amphiboles to re-equilibrate with a Li-Cu depleted melt. Estimated residence times suggest that amphiboles in early dacite could have been present since the end of the 1980-1986 eruptive episode at Mount St. Helens. ?? 2008 Elsevier B.V. All rights reserved.

The Chemical Structure of the Hawaiian Mantle Plume

NASA Astrophysics Data System (ADS)

Ren, Z.; Hirano, N.; Hirata, T.; Takahashi, E.; Ingle, S.

2004-12-01

Numerous geochemical studies of Hawaiian basaltic lavas have shown that the Hawaiian mantle plume is isotopically heterogeneous. However, the distribution and scale of these heterogeneities remain unknown. This is essentially due to the complex interactions created by melting a heterogeneous source, subsequent aggregation of the melts on their way to the surface, and mixing that takes place in shallow magma chambers prior to eruption. In sum, the measured compositions of bulk lavas may represent only _eaverage_f compositions that do not fully reflect the complexity of either the mantle source heterogeneity and/or chemical structure. Melt inclusions, or samples of the local magma frozen in olivine phenocrysts during their formation, are better at recording the complex magmatic history than are the bulk samples. Here, we report major and trace element compositions of olivine-hosted melt inclusions from submarine Haleakala lavas that were collected by 2001-2002 JAMSTEC cruises measured by EPMA and LA-ICP-MS after homogenization at 1250° C, QFM for 20min. Melt inclusions from the submarine Hana Ridge (Haleakala volcano) show large ranges in CaO/Al2O3 (0.92-1.50), TiO2/Na2O (0.79-1.60) and Sr/Nb (14.56-36.60), Zr/Nb (6.48-16.95), ranging from Kilauea-like to Mauna Loa-like compositions within separately-sampled lavas as well as in a single host lava sample. Bulk rocks geochemistry shows that major element composition and trace element ratios such as Zr/Nb, Sr/Nb (Ren et al., 2004a, in press, J. Petrol.) together with Pb, Nd and Sr isotopic ratios (Ren et al., 2004b, submitted to J. Petrol.) of Haleakala shield volcano also display systematic compositional variation changing from a Kilauea-like in the submarine Hana Ridge (main shield stage) to Kilauea-Mauna Loa-like in the subaerial Honomanu stage (late shield stage, data from Chen and Frey, 1991). Some of the compositional variations in melt inclusions in single rocks are wider range than over-all variation observed in bulk rocks. It is important that both Kilauea-like and Mauna Loa-like compositions co-exist in melt inclusions in single submarine Hana Ridge rocks which are identified as Kilauea-like based on bulk geochemistry. These observations are inconsistent with the current interpretation that magma compositions are controlled by concentric zonation of the Hawaiian mantle plume (e.g. Kea component and Loa component), manifested as the Kea trend and the Loa trend volcanoes (e.g. Hauri, 1996; Lassiter et al., 1996). Our new data from olivine-hosted melt inclusions imply that the chemical structure of the Hawaiian mantle plume is significantly more complicated than previously modeled and the length-scale of chemical heterogeneity must be remarkably smaller than estimated based on bulk rock geochemistry.

Phytogeographical Analysis of Seed Plant Genera in China

PubMed Central

QIAN, HONG; WANG, SILONG; HE, JIN-SHENG; ZHANG, JUNLI; WANG, LISONG; WANG, XIANLI; GUO, KE

2006-01-01

• Background and Aims A central goal of biogeography and ecology is to uncover and understand distributional patterns of organisms. China has long been a focus of attention because of its rich biota, especially with respect to plants. Using 290 floras from across China, this paper quantitatively characterizes the composition of floristic elements at multiple scales (i.e. national, provincial and local), and explores the extent to which climatic and geographical factors associated with each flora can jointly and independently explain the variation in floristic elements in local floras. • Methods A study was made of 261 local floras, 28 province-level floras and one national-level flora across China. Genera of seed plants in each flora were assigned to 14 floristic elements according to their worldwide geographical distributions. The composition of floristic elements was related to climatic and geographical factors. • Key Results and Conclusions Variations in percentages of cosmopolitan, tropical and temperate genera among local floras tend to be greater at higher latitudes than at lower latitudes. Latitude is strongly correlated with the proportions of 13 of the 14 floristic elements. Correlations of the proportions of floristic elements with longitude are much weaker than those with latitude. Climate represented by the first principal component of a principal component analysis was strongly correlated with the proportions of floristic elements in local floras (|r| = 0·75 ± 0·18). Geographical coordinates independently explained about four times as much variation in floristic elements as did climate. Further research is necessary to examine the roles of water–energy dynamics, geology, soils, biotic interactions, and historical factors such as land connections between continents in the past and at present in creating observed floristic patterns. PMID:16945946

The interaction of genotype and environment determines variation in the maize kernal ionome

USDA-ARS?s Scientific Manuscript database

Plants obtain soil-resident elements that support growth and metabolism via water-mediated flow due to transpiration and active transport processes. The availability of elements in the environment can interact with the genetic capacity of the organism to modulate element uptake through plastic adapt...

Studying the atmospheric chemistry: Statististical study of epiphyte plant Spanish Moss in Florida, USA

NASA Astrophysics Data System (ADS)

Ghosh, S.; Parker, W.; Odom, L.

2003-04-01

The detrimental influence which airborne contaminants has on vegetation in many parts of the world has become of increasing interest and concern in recent years. The use of suitable plants such as epiphytes (vegetation which grows on another plant) for measuring concentrations of airborne materials provides the advantages of (a) an integration of the periodic fluctuations in amounts of these materials that occur over relatively long periods of time and (b) economy in sampling. This class of plants, which are mosses and lichens, are somewhat less dependent on their substrates and may act more purely as air indicators. The epiphytes do not derive nutrients from soil, but depend on airborne moisture and particulates for elemental sources. The way with which they absorb nutrients from these external sources gives rise to an uncommon sensitivity to the harmful effects of air pollution. Also in addition, plants of this class absorb constituents of airborne particulates which may not be directly toxic to the plant but of environmental concern to humans. In particular, trace element accumulation in epiphytic Tillandsia usneoides L. (Spanish Moss) common in Atlantic and Gulf Coastal plains has been used in air pollution studies. Recent studies have also evaluated Spanish moss as an indicator of contamination of pesticides and other organic aromatic compounds. Two hundred and six samples of Spanish moss (Tillandsia usneoides L.) were collected from over its geographic range in Florida for this study. The samples were analyzed for a variety of major and minor elements, and the resulting data were statistically analyzed for pertinent geochemical associations. Three statistical methods have been used on the geochemical data of Spanish moss to evaluate the nature of probable sources for each of the elements. This kind of work is being done because the exact nature and location of each specimen is unknown. So, the three different statistical methods have been used to classify or determine where the elements came in from based on the following study done by HT Shacklette and JJ Connor in 1973. The first method used, R mode Cluster Analysis (CA) in this report has resulted in some specific group of elements that tend to be coming from the same kind of sources. The Rare Earth Elements (REEs) show an excellent grouping. Their probable source maybe from samples, which had lots of intake of soil dust and rock dust. The grouping of elements Co-Pb-V-Ni-W-Ba probably is because they are all from samples collected near highway where there is a lot of automotive exhaust. Again, clustering of Zn-Sn-Mo-In-Sb probably show that they are from samples, which came from some industrial sites. Samples probably collected from and around sea beaches will have the following elements clustering together: Na-Mg-Li-B. The second method, Principal Component Analysis (PCA) in this project has resulted in a specific descriptive model of chemical variation in Spanish moss. The model appears to be mathematically adequate, in that 4 components describe nearly 64% of the total observed variation and also informative in identifying some major probable sources for the different elements analyzed. Two kinds of sources have been identified: one is natural particulates from soil and rock dust and agricultural sources &the other being technological metals from automotive exhaust and industrial output. The first two components have been labeled as "natural particulates" and the remaining as "technological metals" after Connor and Shacklette. The elements with highest loadings on first and second component are lithium, boron, sodium, magnesium, aluminum, calcium, scandium, titanium, iron, selenium, strontium, yttrium, molybdenum, indium, antimony, lanthanum, uranium and bismuth and Rare earth elements (REE) which in general have mainly agricultural and natural sources. The elements with highest loadings on third and fourth component are potassium, copper, arsenic, barium, vanadium, manganese, cobalt, nickel, copper, zinc, arsenic, rubidium, cadmium, tin, cesium, tungsten, barium, mercury and lead, mostly having industrial and automotive sources. Discriminant Function Analysis (DFA) has been used as verification to the results obtained from CA and PCA. There is some factor, which has a strong effect on some of the elements, and this factor is unidentified yet in the project. Overall, most of the elements are behaving as expected based on the earlier work of Shacklette and Connor (1973) and results from CA and PCA.

Comparison of univariate and multivariate models for prediction of major and minor elements from laser-induced breakdown spectra with and without masking

NASA Astrophysics Data System (ADS)

Dyar, M. Darby; Fassett, Caleb I.; Giguere, Stephen; Lepore, Kate; Byrne, Sarah; Boucher, Thomas; Carey, CJ; Mahadevan, Sridhar

2016-09-01

This study uses 1356 spectra from 452 geologically-diverse samples, the largest suite of LIBS rock spectra ever assembled, to compare the accuracy of elemental predictions in models that use only spectral regions thought to contain peaks arising from the element of interest versus those that use information in the entire spectrum. Results show that for the elements Si, Al, Ti, Fe, Mg, Ca, Na, K, Ni, Mn, Cr, Co, and Zn, univariate predictions based on single emission lines are by far the least accurate, no matter how carefully the region of channels/wavelengths is chosen and despite the prominence of the selected emission lines. An automated iterative algorithm was developed to sweep through all 5485 channels of data and select the single region that produces the optimal prediction accuracy for each element using univariate analysis. For the eight major elements, use of this technique results in a 35% improvement in prediction accuracy; for minors, the improvement is 13%. The best wavelength region choice for any given univariate analysis is likely to be an inherent property of the specific training set that cannot be generalized. In comparison, multivariate analysis using partial least-squares (PLS) almost universally outperforms univariate analysis. PLS using all the same wavelength regions from the univariate analysis produces results that improve in accuracy by 63% for major elements and 3% for minor element. This difference is likely a reflection of signal to noise ratios, which are far better for major elements than for minor elements, and likely limit their prediction accuracy by any technique. We also compare predictions using specific wavelength ranges for each element against those employing all channels. Masking out channels to focus on emission lines from a specific element that occurs decreases prediction accuracy for major elements but is useful for minor elements with low signals and proportionally much higher noise; use of PLS rather than univariate analysis is still recommended. Finally, we tested the generalizability of our results by analyzing a second data set from a different instrument. Overall prediction accuracies for the mixed data sets are higher than for either set alone for all major and minor elements except Ni, Cr, and Co, where results are roughly comparable.

Records of River Variation in the Shells of Freshwater Bivalves

NASA Astrophysics Data System (ADS)

Carroll, M.; Romanek, C.

2005-12-01

The skeletons of hard-shelled invertebrates such as corals and bivalves are commonly used in marine settings as archives of environmental information. They are less commonly used in freshwater settings where variability in water chemistry makes it more difficult to calibrate chemical proxies such as the Sr:Ca in a shell. Our objective is to evaluate whether trace element concentrations in freshwater bivalve shells contain information on environmental conditions. Multiple elements (Ba, Cu, Mn and Sr) were analyzed within the shells of modern bivalves from four streams on DOE's Savannah River Site in S.C. Laser Ablation ICP-MS was used to measure elemental concentrations across five aragonitic shells from each site. These elements were chosen because they are present in detectable concentrations (ppm) in the shell and they have been suggested as useful proxies for temperature, rainfall, productivity and pollution. Results were compared to historical monthly site records of water chemistry and chemical analyses of water samples collected from the streams where the clams were found. The average shell concentrations of Sr and Mn were significantly different between sites and increased proportionally to water concentration. This was not observed for Ba and Cu. For example, the Ba concentrations of shells collected at a site downstream of a lake were higher than those for shells from stream sites with significantly higher dissolved Ba concentrations. Copper was only detected at dark growth lines with the number of lines and shell material between them varying between shells within the same stream. Intrashell profiles of Ba, Sr and Mn concentrations exhibited cyclical variation. The magnitude of cyclical variation for Mn and Sr within a shell corresponds with the annual variation in monthly water sample concentrations. Again, this pattern was not observed for Ba, especially in shells from the site downstream of a lake. This supports suggestions that particulate organic matter, to which Ba preferentially partitions, plays a role in bivalve Ba uptake. Finally, variations in Ba, Cu, Mn and Sr profiles across shells are not in unison. The individual elemental responses to biological and physicochemical effects suggest that the elemental records in freshwater bivalve shells can be interpreted as environmental proxies.

Variation in the genomic locations and sequence conservation of STAR elements among staphylococcal species provides insight into DNA repeat evolution

PubMed Central

2012-01-01

Background Staphylococcus aureus Repeat (STAR) elements are a type of interspersed intergenic direct repeat. In this study the conservation and variation in these elements was explored by bioinformatic analyses of published staphylococcal genome sequences and through sequencing of specific STAR element loci from a large set of S. aureus isolates. Results Using bioinformatic analyses, we found that the STAR elements were located in different genomic loci within each staphylococcal species. There was no correlation between the number of STAR elements in each genome and the evolutionary relatedness of staphylococcal species, however higher levels of repeats were observed in both S. aureus and S. lugdunensis compared to other staphylococcal species. Unexpectedly, sequencing of the internal spacer sequences of individual repeat elements from multiple isolates showed conservation at the sequence level within deep evolutionary lineages of S. aureus. Whilst individual STAR element loci were demonstrated to expand and contract, the sequences associated with each locus were stable and distinct from one another. Conclusions The high degree of lineage and locus-specific conservation of these intergenic repeat regions suggests that STAR elements are maintained due to selective or molecular forces with some of these elements having an important role in cell physiology. The high prevalence in two of the more virulent staphylococcal species is indicative of a potential role for STAR elements in pathogenesis. PMID:23020678

Direct formulation of a 4-node hybrid shell element with rotational degrees of freedom

NASA Technical Reports Server (NTRS)

Aminpour, Mohammad A.

1990-01-01

A simple 4-node assumed-stress hybrid quadrilateral shell element with rotational or drilling degrees of freedom is formulated. The element formulation is based directly on a 4-node element. This direct formulation requires fewer computations than a similar element that is derived from an internal 8-node isoparametric element in which the midside degrees of freedom are eliminated in favor of rotational degree of freedom at the corner nodes. The formulation is based on the principle of minimum complementary energy. The membrane part of the element has 12 degrees of freedom including rotational degrees of freedom. The bending part of the element also has 12 degrees of freedom. The bending part of the quadratic variations for both in-plane and out-of-plane displacement fields and linear variations for both in-plane and out-of-plane rotation fields are assumed along the edges of the element. The element Cartesian-coordinate system is chosen such as to make the stress field invariant with respect to node numbering. The membrane part of the stress field is based on a 9-parameter equilibrating stress field, while the bending part is based on a 13-parameter equilibrating stress field. The element passes the patch test, is nearly insensitive to mesh distortion, does not lock, possesses the desirable invariance properties, has no spurious modes, and produces accurate and reliable results.

Application of finite element approach to transonic flow problems

NASA Technical Reports Server (NTRS)

Hafez, M. M.; Murman, E. M.; Wellford, L. C., Jr.

1976-01-01

A variational finite element model for transonic small disturbance calculations is described. Different strategy is adopted in subsonic and supersonic regions, and blending elements are introduced between different regions. In the supersonic region, no upstream effect is allowed. If rectangular elements with linear shape functions are used, the model is similar to Murman's finite difference operators. Higher order shape functions, nonrectangular elements, and discontinuous approximation of shock waves are also discussed.

Extraction of information from major element chemical analyses of lunar basalts

NASA Technical Reports Server (NTRS)

Butler, J. C.

1985-01-01

Major element chemical analyses often form the framework within which similarities and differences of analyzed specimens are noted and used to propose or devise models. When percentages are formed the ratios of pairs of components are preserved whereas many familiar statistical and geometrical descriptors are likely to exhibit major changes. This ratio preserving aspect forms the basis for a proposed framework. An analysis of compositional variability within the data set of 42 major element analyses of lunar reference samples was selected to investigate this proposal.

Chemical composition of modern and fossil Hippopotamid teeth and implications for paleoenvironmental reconstructions and enamel formation - Part 1: Major and minor element variation

NASA Astrophysics Data System (ADS)

Brügmann, G.; Krause, J.; Brachert, T. C.; Kullmer, O.; Schrenk, F.; Ssemmanda, I.; Mertz, D. F.

2012-01-01

Bioapatite in mammalian teeth is readily preserved in continental sediments and represents a very important archive for reconstructions of environment and climate evolution. This project provides a comprehensive data base of major, minor and trace element and isotope tracers for tooth apatite using a variety of microanalytical techniques. The aim is to identify specific sedimentary environments and to improve our understanding on the interaction between internal metabolic processes during tooth formation and external nutritional control and secondary alteration effects. Here, we use the electron microprobe to determine the major and minor element contents of fossil and modern molar enamel, cement and dentin from Hippopotamids. Most of the studied specimens are from different ecosystems in Eastern Africa, representing modern and fossil lacustrine (Lake Kikorongo, Lake Albert, and Lake Malawi) and modern fluvial environments of the Nile River system. Secondary alteration effects - in particular FeO, MnO, SO3 and F concentrations - are 2 to 10 times higher in fossil than in modern enamel; the secondary enrichment of these components in fossil dentin and cement is even higher. In modern and fossil enamel, along sections perpendicular to the enamel-dentin junction (EDJ) or along cervix-apex profiles, P2O5 and CaO contents and the CaO/P2O5 ratios are very constant (StdDev ∼1%). Linear regression analysis reveals tight control of the MgO (R2∼0.6), Na2O and Cl variation (for both R2>0.84) along EDJ-outer enamel rim profiles, despite large concentration variations (40% to 300%) across the enamel. These minor elements show well defined distribution patterns in enamel, similar in all specimens regardless of their age and origin, as the concentration of MgO and Na2O decrease from the enamel-dentin junction (EDJ) towards the outer rim, whereas Cl displays the opposite trend. Fossil enamel from Hippopotamids which lived in the saline Lake Kikorongo have a much higher MgO/Na2O ratio (∼1.11) than those from the Neogene fossils of Lake Albert (MgO/Na2O∼0.4), which was a large fresh water lake like those in the western Branch of the East African Rift System today. Similarly, the MgO/Na2O ratio in modern enamel from the White Nile River (∼0.36), which has a Precambrian catchment of dominantly granites and gneisses and passes through several saline zones, is higher than that from the Blue Nile River, whose catchment is the Neogene volcanic Ethiopian Highland (MgO/Na2O∼0.22). Thus, particularly MgO/Na2O might be a sensitive fingerprint for environments where river and lake water have suffered strong evaporation. Enamel formation in mammals takes place at successive mineralization fronts within a confined chamber where ion and molecule transport is controlled by the surrounding enamel organ. During the secretion and maturation phases the epithelium generates different fluid composition, which in principle, should determine the final composition of enamel apatite. This is supported by co-linear relationships between MgO, Cl and Na2O which can be interpreted as binary mixing lines. However, if maturation starts after secretion is completed, the observed element distribution can only be explained by equilibration of existing and addition of new apatite during maturation. It appears the initial enamel crystallites precipitating during secretion and the newly formed bioapatite crystals during maturation equilibrate with a continuously evolving fluid. During crystallization of bioapatite the enamel fluid becomes continuously depleted in MgO and Na2O, but enriched in Cl which results in the formation of MgO, and Na2O-rich, but Cl-poor bioapatite near the EDJ and MgO- and Na2O-poor, but Cl-rich bioapatite at the outer enamel rim. The linkage between lake and river water compositions, bioavailability of elements for plants, animal nutrition and tooth formation is complex and multifaceted. The quality and limits of the MgO/Na2O and other proxies have to be established with systematic investigations relating chemical distribution patterns to sedimentary environment and to growth structures developing as secretion and maturation proceed during tooth formation.

Influence of mesh density, cortical thickness and material properties on human rib fracture prediction.

PubMed

Li, Zuoping; Kindig, Matthew W; Subit, Damien; Kent, Richard W

2010-11-01

The purpose of this paper was to investigate the sensitivity of the structural responses and bone fractures of the ribs to mesh density, cortical thickness, and material properties so as to provide guidelines for the development of finite element (FE) thorax models used in impact biomechanics. Subject-specific FE models of the second, fourth, sixth and tenth ribs were developed to reproduce dynamic failure experiments. Sensitivity studies were then conducted to quantify the effects of variations in mesh density, cortical thickness, and material parameters on the model-predicted reaction force-displacement relationship, cortical strains, and bone fracture locations for all four ribs. Overall, it was demonstrated that rib FE models consisting of 2000-3000 trabecular hexahedral elements (weighted element length 2-3mm) and associated quadrilateral cortical shell elements with variable thickness more closely predicted the rib structural responses and bone fracture force-failure displacement relationships observed in the experiments (except the fracture locations), compared to models with constant cortical thickness. Further increases in mesh density increased computational cost but did not markedly improve model predictions. A ±30% change in the major material parameters of cortical bone lead to a -16.7 to 33.3% change in fracture displacement and -22.5 to +19.1% change in the fracture force. The results in this study suggest that human rib structural responses can be modeled in an accurate and computationally efficient way using (a) a coarse mesh of 2000-3000 solid elements, (b) cortical shells elements with variable thickness distribution and (c) a rate-dependent elastic-plastic material model. Copyright © 2010 IPEM. Published by Elsevier Ltd. All rights reserved.

Spatial variability of organic matter molecular composition and elemental geochemistry in surface sediments of a small boreal Swedish lake

NASA Astrophysics Data System (ADS)

Tolu, Julie; Rydberg, Johan; Meyer-Jacob, Carsten; Gerber, Lorenz; Bindler, Richard

2017-04-01

The composition of sediment organic matter (OM) exerts a strong control on biogeochemical processes in lakes, such as those involved in the fate of carbon, nutrients and trace metals. While between-lake spatial variability of OM quality is increasingly investigated, we explored in this study how the molecular composition of sediment OM varies spatially within a single lake and related this variability to physical parameters and elemental geochemistry. Surface sediment samples (0-10 cm) from 42 locations in Härsvatten - a small boreal forest lake with a complex basin morphometry - were analyzed for OM molecular composition using pyrolysis gas chromatography mass spectrometry for the contents of 23 major and trace elements and biogenic silica. We identified 162 organic compounds belonging to different biochemical classes of OM (e.g., carbohydrates, lignin and lipids). Close relationships were found between the spatial patterns of sediment OM molecular composition and elemental geochemistry. Differences in the source types of OM (i.e., terrestrial, aquatic plant and algal) were linked to the individual basin morphometries and chemical status of the lake. The variability in OM molecular composition was further driven by the degradation status of these different source pools, which appeared to be related to sedimentary physicochemical parameters (e.g., redox conditions) and to the molecular structure of the organic compounds. Given the high spatial variation in OM molecular composition within Härsvatten and its close relationship with elemental geochemistry, the potential for large spatial variability across lakes should be considered when studying biogeochemical processes involved in the cycling of carbon, nutrients and trace elements or when assessing lake budgets.

Selected elements in major minerals from bituminous coal as determined by INAA: Implications for removing environmentally sensitive elements from coal

USGS Publications Warehouse

Palmer, C.A.; Lyons, P.C.

1996-01-01

The four most abundant minerals generally found in Euramerican bituminous coals are quartz, kaolinite, illite and pyrite. These four minerals were isolated by density separation and handpicking from bituminous coal samples collected in the Ruhr Basin, Germany and the Appalachian basin, U.S.A. Trace-element concentrations of relatively pure (??? 99+%) separates of major minerals from these coals were determined directly by using instrumental neutron activation analysis (INAA). As expected, quartz contributes little to the trace-element mass balance. Illite generally has higher trace-element concentrations than kaolinite, but, for the concentrates analyzed in this study, Hf, Ta, W, Th and U are in lower concentrations in illite than in kaolinite. Pyrite has higher concentrations of chalcophile elements (e.g., As and Se) and is considerably lower in lithophile elements as compared to kaolinite and illite. Our study provides a direct and sensitive method of determining trace-element relationships with minerals in coal. Mass-balance calculations suggest that the trace-element content of coal can be explained mainly by three major minerals: pyrite, kaolinite and illite. This conclusion indicates that the size and textural relationships of these major coal minerals may be a more important consideration as to whether coal cleaning can effectively remove the most environmentally sensitive trace elements in coal than what trace minerals are present.

Variations in the non-coding transcriptome as a driver of inter-strain divergence and physiological adaptation in bacteria.

PubMed

Kopf, Matthias; Klähn, Stephan; Scholz, Ingeborg; Hess, Wolfgang R; Voß, Björn

2015-04-22

In all studied organisms, a substantial portion of the transcriptome consists of non-coding RNAs that frequently execute regulatory functions. Here, we have compared the primary transcriptomes of the cyanobacteria Synechocystis sp. PCC 6714 and PCC 6803 under 10 different conditions. These strains share 2854 protein-coding genes and a 16S rRNA identity of 99.4%, indicating their close relatedness. Conserved major transcriptional start sites (TSSs) give rise to non-coding transcripts within the sigB gene, from the 5'UTRs of cmpA and isiA, and 168 loci in antisense orientation. Distinct differences include single nucleotide polymorphisms rendering promoters inactive in one of the strains, e.g., for cmpR and for the asRNA PsbA2R. Based on the genome-wide mapped location, regulation and classification of TSSs, non-coding transcripts were identified as the most dynamic component of the transcriptome. We identified a class of mRNAs that originate by read-through from an sRNA that accumulates as a discrete and abundant transcript while also serving as the 5'UTR. Such an sRNA/mRNA structure, which we name 'actuaton', represents another way for bacteria to remodel their transcriptional network. Our findings support the hypothesis that variations in the non-coding transcriptome constitute a major evolutionary element of inter-strain divergence and capability for physiological adaptation.

Ca-,Al-rich inclusions in the unique chondrite ALH85085 - Petrology, chemistry, and isotopic compositions

NASA Technical Reports Server (NTRS)

Kimura, Makoto; El-Goresy, Ahmed; Palme, Herbert; Zinner, Ernst

1993-01-01

A comprehensive study is performed for the Ca-,Al-rich inclusions (CAIs) in the unique chondrite ALH85085. The ALH85085 inclusions are smaller (5-80 microns) and more refractory than their counterparts in carbonaceous chondrites. The study includes 42 inclusions for petrography and mineralogy, 15 for bulk major and minor element chemical composition, six for Mg-Al isotopic systematics, 10 for Ca isotopes, nine for Ti isotopes, and six for trace element abundances. In addition, oxygen-isotopic compositions were determined in minerals from a single inclusion. No correlation is found between mineralogy, major element chemistry, and trace element abundances. It is further shown that the high-temperature geochemical behavior of ultrarefractory trace elements is decoupled from that of the major elements Ca and Ti (Ti is correlated with the relatively volatile elements Nb and Yb) implying that perovskite is of only minor importance as carrier of ultrarefractories.

Provenance of Continental Margin Sediments in the East China Sea, Results from IODP Expedition 346

NASA Astrophysics Data System (ADS)

Anderson, C. H.; Dunlea, A. G.; Murray, R. W.; Tada, R.; Alvarez Zarikian, C. A.

2016-12-01

Sedimentation in the East China Sea (ECS) is driven largely by fluvial and eolian fluxes that are likely influenced by the East Asian Monsoon (EAM). Seasonal shifts and long term trends in the atmospheric and precipitation regimes over Asia are recorded in the inorganic chemistry of the sediment of the ECS and other Asian coastal seas. Changes in the intensity and timing of the EAM over a variety of time scales may impact the relative proportion of fluvial and eolian inputs into the ECS, and perhaps even their individual sources. We utilize bulk sediment recovered from IODP Sites U1428 and U1429 in the ECS during IODP Expedition 346 in 2013 to examine changes in the EAM over the past 400ky. Sites U1428 and U1429 are located in the northernmost portion of the ECS in the Danjo Basin, and are separated by 7.4 km. We present major, trace and rare earth element (REE) data for 83 bulk sediment samples analyzed by ICP-ES and ICP-MS, and interpret this data set using a variety of geochemical approaches in addition to multivariate statistics (Q-mode Factor Analyses, Multiple Linear Regressions) to investigate the provenance of terrigenous material during the Pleistocene. We focus on a suite of nine elements that are associated with terrigenous components (Al, Ti, Sc, Cr, Ni, Zn, Rb, Th, La), and that are expected to reflect potential changes in provenance. At both sites average downhole major element ratios exhibit limited variation, but indicate mixing between multiple compositional sources. Ternary diagrams utilizing La-Th-Sc and Rb-Sc-Zn diagrams suggest crustal mixing between three or more sources including upper continental and mafic inputs. Our multivariate statistical data exploration consistently indicates four statistically robust end members explaining 99% of total data variability when we treat these sites as a combined regional signal. Considering each site separately, the four end members are joined by additional fifth end member at each site; highlighting variation in Cr or Ti depending on the site. Inputs from different upper crustal sources and most likely including refractory sands are the most likely contributors to the bulk sediment. Additional results from further statistical analysis will also be presented.

Trace element fractionation and transport in boreal rivers and soil porewaters of permafrost-dominated basaltic terrain in Central Siberia

NASA Astrophysics Data System (ADS)

Pokrovsky, O. S.; Schott, J.; Dupré, B.

2006-07-01

The chemical status of ˜40 major and trace elements (TE) and organic carbon (OC) in pristine boreal rivers draining the basaltic plateau of Central Siberia (Putorana) and interstitial solutions of permafrost soils was investigated. Water samples were filtered in the field through progressively decreasing pore size (5 μm → 0.22 μm → 0.025 μm → 10 kDa → 1 kDa) using cascade frontal filtration technique. Most rivers and soil porewaters exhibit 2-5 times higher than the world average concentration of dissolved (i.e., <0.22 μm) iron (0.03-0.4 mg/L), aluminum (0.03-0.4 mg/L), OC (10-20 mg/L) and various trace elements that are usually considered as immobile in weathering processes (Ti, Zr, Ga, Y, REEs). Ultrafiltration revealed strong relationships between concentration of TE and that of colloidal Fe and Al. According to their partition during filtration and association with colloids, two groups of elements can be distinguished: (i) those weakly dependent on ultrafiltration and that are likely to be present as truly dissolved inorganic species (Li, Na, K, Si, Mn, Mo, Rb, Cs, As, Sb) or, partially (20-30%) associated with small size Fe- and Al-colloids (Ca, Mg, Sr, Ba) and to small (<1-10 kDa) organic complexes (Co, Ni, Cu, Zn), and (ii) elements strongly associated with colloidal iron and aluminum in all ultrafiltrates largely present in 1-100 kDa fraction (Ga, Y, REEs, Pb, V, Cr, Ti, Ge, Zr, Th, U). TE concentrations and partition coefficients did not show any detectable variations between different colloidal fractions for soil porewaters, suprapermafrost flow and surface streams. TE concentration measurements in river suspended particles demonstrated significant contribution (i.e., ⩾30%) of conventionally dissolved (<0.22 μm) forms for usually "immobile" elements such as divalent transition metals, Cd, Pb, V, Sn, Y, REEs, Zr, Hf, Th. The Al-normalized accumulation coefficients of TE in vegetation litter compared to basalts achieve 10-100 for B, Mn, Zn, As, Sr, Sn, Sb, and the larch litter degradation is able to provide the major contribution to the annual dissolved flux of most trace elements. It is hypothesized that the decomposition of plant litter in the topsoil horizon leads to Fe(III)-, Al-organic colloids formation and serves as an important source of elements in downward percolating fluids.

The role of sulfides in the fractionation of highly siderophile and chalcophile elements during the formation of martian shergottite meteorites

NASA Astrophysics Data System (ADS)

Baumgartner, Raphael J.; Fiorentini, Marco L.; Lorand, Jean-Pierre; Baratoux, David; Zaccarini, Federica; Ferrière, Ludovic; Prašek, Marko K.; Sener, Kerim

2017-08-01

The shergottite meteorites are ultramafic to mafic igneous rocks whose parental magmas formed from partial melting of the martian mantle. This study reports in-situ laser ablation inductively coupled plasma mass spectrometry analyses for siderophile and chalcophile major and trace elements (i.e., Co, Ni, Cu, As, Se, Ag, Sb, Te, Pb, Bi, and the highly siderophile platinum-group elements, PGE: Os, Ir, Ru, Rh, Pt and Pd) of magmatic Fe-Ni-Cu sulfide assemblages from four shergottite meteorites. They include three geochemically similar incompatible trace element- (ITE-) depleted olivine-phyric shergottites (Yamato-980459, Dar al Gani 476 and Dhofar 019) that presumably formed from similar mantle and magma sources, and one distinctively ITE-enriched basaltic shergottite (Zagami). The sulfides in the shergottites have been variably modified by alteration on Earth and Mars, as well as by impact shock-shock related melting/volatilization during meteorite ejection. However, they inherit and retain their magmatic PGE signatures. The CI chondrite-normalized PGE concentration patterns of sulfides reproduce the whole-rock signatures determined in previous studies. These similarities indicate that sulfides exerted a major control on the PGE during shergottite petrogenesis. However, depletions of Pt (and Ir) in sulfide relative to the other PGE suggest that additional phases such discrete Pt-Fe-Ir alloys have played an important role in the concentration of these elements. These alloys are expected to have enhanced stability in reduced and FeO-rich shergottite magmas, and could be a common feature in martian igneous systems. A Pt-rich PGM was found to occur in a sulfide assemblage in Dhofar 019. However, its origin may be related to impact shock-related sulfide melting and volatilisation during meteorite ejection. In the ITE-depleted olivine-phyric shergottites, positive relationships exist between petrogenetic indicators (e.g., whole-rock Mg-number) and most moderately to strongly siderophile and chalcophile elements in sulfides. These variations extend to incompatible elements like Te and Pd. The whole-rock concentrations of Pd derived from mass-balance calculations decrease by one order of magnitude in the order Y-980459, DaG 476 and Dhofar 019, and broadly overlap the trends in previously published whole-rock analyses. Mantle heterogeneities, and the timing of sulfide saturation as function of mantle melting and/or magma fractionation following ascent from the mantle, may have been the controlling factors of the siderophile and chalcophile element systematics in the analyzed shergottites.

Geochemical and Sr isotopic variations in groundwaters of the Edwards aquifer, central Texas

DOE Office of Scientific and Technical Information (OSTI.GOV)

Oetting, G.C.; Banner, J.L.; Sharp, J.M. Jr.

1992-01-01

The regionally-extensive Edwards aquifer of central Texas lies on the northwestern edge of the Gulf of Mexico Basin. The aquifer system is composed primarily of lower Cretaceous marine limestones and dolostones with minor evaporitic and siliciclastic confining units of the Edwards Group and associated formations. The eastern and southern boundaries of the freshwater aquifer are defined by an abrupt change in groundwater salinity that is known as the badwater line. Variation in the isotopic composition and concentration of Sr in the mineral phases and waters in this aquifer system provide means to examine groundwater evolution processes. Models of simultaneous variationsmore » in Sr isotopes and major and trace ions are used to constrain processes of groundwater-rock interaction and groundwater mixing. Geochemical variations were examined in Edwards carbonate host rocks and groundwaters in Williamson and Bell Counties. Groundwaters were sampled along and across the badwater line, and range in salinity from 320--2,630 mg/l total dissolved solids. Major ion distributions in the water samples demonstrate a hydrochemical facies transition from Ca-HCO[sub 3] freshwaters to Na-Cl-SO[sub 4]-HCO[sub 3] badwaters. Both water types show a wide range of [sup 87]Sr/[sup 86]Sr values: Ca-HCO[sub 3] waters range from values of 0.7078--0.7093, and Na-Cl-SO[sub 4]-HCO[sub 3] waters range from values of 0.7087--0.7097. The Sr isotope compositions for both water groups are significantly greater than their host marine carbonates ([approximately]0.7075). The high Sr isotopic compositions indicate an extraformational source of Sr in both hydrochemical facies. Fluid mixing processes involving a freshwater and at least two badwater endmembers are required to account for variations in elemental and isotopic compositions in the groundwaters. Mineral-solution reactions may operate during and/or subsequent to mixing to produce the compositional variability observed in some intermediate waters.« less

Volcanic Aerosol Phosphorus, Chlorine, and Sulfur at Kilauea, Hawaii

DOE Office of Scientific and Technical Information (OSTI.GOV)

Darzi, M.; Winchester, J.W.

1982-12-20

Aerosol concentrations of P, Cl, S, and major soil-derived elements were measured sequentially at the Hawaiian Volcano Observatory (HVO) from March to September 1979, with 3.7-hour time resolution using a Nucleopore-filter sampler. The filters were analyzed by particle-induced X ray emission (PIXE). Comparison with diurnal variations in the air flow inferred from major soil elements, e.g., Fe, as well as measurements made previously at fumaroles near HVO, indicate that the P, C. and S may be attributed mainly to volcanic emissions from Kilauea. From April 23 to June 30, P was found with concentrations up to 1000 ng m/sup -3/;more » but before and after those dates, P was generally below the detection limit of 50--80 ng m/sup -3/. Cl and S were frequently found over the entire sampling period, also with concentrations up to 1000 ng m/sup -3/. However, when P was found, Cl was almost never detected simultaneously. The mutually exclusive occurrences of P and Cl suggest volatility release of HCl from aerosol particles by reaction with strong acid associated with P. If strong acidity is due to H/sub 2/SO/sub 4/, it is not well predicted by S, which may also include other sulfates or sulfur, since aerosol S concentrations are not well correlated with P or Cl. The behavior of these three elements suggests that the volcanic sources of P are more localized than those of Cl or S. It is significant that concentrations of aerosol P can be as high as aerosol Cl and S, all apparently of primary volcanic origin, indicating that volcanism may be an important, but hitherto unrecognized, process in the atmosphere goechemical cycling of phosphorus.« less

Synthesis of Ti Oxides at Reducing Conditions: Implications for Beamline Standards and Cosmochemistry

NASA Technical Reports Server (NTRS)

Righter, K.; Pando, K. A.; Butterworth, A. L.; Gainsforth, Z.; Jilly-Rehak, C. E.; Westphal, A. J.

2017-01-01

These initial experiments demonstrate the great potential for synthesizing customized compounds for use as standards, or in buffering experiments at reducing conditions. We are also investigating Cr and V oxides, as well as compounds containing these elements such as FeV2O4 and FeCr2O4. Oxygen fugacity exerts a major control on mineral major element chemistry and elemental valence of minerals in any plane-tary compositional system [1]. For Earth, Fe is multivalent ranging from nearly Fe0 at low fO2 in the deep mantle to Fe2+ to Fe3+ at high low fO2. For solar nebular and meteoritic materials fO2 ranges from near IW to 10 log fO2 units below the IW buffer [1]. Phases in CAIs, for example, contain no Fe2+, but may contain Ti4+, Ti3+, or Ti2+, and Cr3+ or Cr2+, and V3+ or V2+ [1,2,3]. De-tailed study of inclusions may reveal important differences in fO2 thus reflecting different environments in the solar nebula [4]. XANES, FEG-SEM, and TEM can reveal such variations in micro and nano samples such as Stardust and cosmic dust particles [5], but successful application to reduced conditions depends upon the availability of well characterized standards. Acquiring appropriate standards for reduced phases that contain Ti3+ or Ti2+, Cr3+ or Cr2+, and V3+ or V2+ can be a challenge. Here we report our preliminary results at synthesizing reduced Ti bearing standards, and focus on the preliminary characterization.

Constraints on lithosphere-asthenosphere melt mixing in basaltic intraplate volcanism from olivine melt inclusions from southern Payenia, Argentina

NASA Astrophysics Data System (ADS)

Søager, Nina; Portnyagin, Maxim; Hoernle, Kaj; Holm, Paul Martin; Garbe-Schönberg, Dieter

2018-06-01

We present major and trace element compositions of melt inclusions from three alkali basalts from the Río Colorado volcanic field in the Payenia backarc province, Argentina. Modeling of diffusion profiles around the inclusions showed that most inclusions equilibrated <14 days after formation, indicating a short crustal residence time for the magmas and nearly direct ascent through the crust. Despite overlapping host rock isotopic compositions, the inclusions show a large variation in their degree of enrichment, and display trends that we interpret as mixing between asthenospheric OIB-type low K2O-high Nb/U melts and enriched high K2O-low Nb/U lithospheric mantle melts similar in composition to alkaline lamprophyres. The low Nb/U magmas are excessively enriched in the elements Cs, Rb, Ba, Th, U, K, Pb and Cl relative to Nb, Ta and REEs. The enriched low Nb/U components are interpreted to have formed by percolative fractional crystallization of asthenospheric high Nb/U melts in the lithospheric mantle involving crystallization of clinopyroxene, apatite and rutile. The residual fluid-rich melts either mixed directly with new batches of high Nb/U melts or metasomatized and veined the lithospheric mantle which later re-melted during continued volcanism. The major element compositions of the high K2O-low Nb/U components are distinct for the whole rocks and melt inclusions, and most enriched inclusions have lower SiO2 and higher TiO2 contents indicating derivation by melting of amphibole-bearing veins. In contrast, most whole rock low Nb/U basalts have higher SiO2 and lower TiO2 and were most likely formed by melting of pyroxenitic veins or peridotitic metasomatized lithospheric mantle.

Meter Scale Heterogeneities in the Oceanic Mantle Revealed in Ophiolites Peridotites

NASA Astrophysics Data System (ADS)

Haller, M. B.; Walker, R. J.; Day, J. M.; O'Driscoll, B.; Daly, J. S.

2016-12-01

Mid-ocean ridge basalts and other oceanic mantle-derived rocks do not capture the depleted endmember isotopic compositions present in oceanic peridotites. Ophiolites are especially useful in interrogating this issue as field-based observations can be paired with geochemical investigations over a wide range of geologic time. Grid sampling methods (3m x 3m) at the 497 Ma Leka Ophiolite Complex (LOC), Norway, and the 1.95 Ga Jormua Ophiolite Complex (JOC), Finland, offer an opportunity to study mantle domains at the meter and kilometer scale, and over a one billion year timespan. The lithology of each locality predominately comprises harzburgite, hosting layers and lenses of dunite and pyroxenite. Here, we combine highly siderophile elements (HSE) and Re-Os isotopic analysis of these rocks with major and trace element measurements. Harzburgites at individual LOC grid sites show variations in γOs(497 Ma) (-2.1 to +2.2) at the meter scale. Analyses of adjacent, more radiogenic dunites within the same LOC grid, reveal that dunites may either have similar γOs to their host harzburgite, or different, implying interactions between spatially associated rock types may differ at the meter scale. Averaged γOs values between the mantle sections of two LOC grid sites (+1.3 and -0.4) separated by 5 km indicate km-scale heterogeneity in the convecting upper mantle. Pd/Ir and Ru/Ir ratios are scattered and do not obviously correlate with γOs values. Analyses of pyroxenites within LOC grid sections, thin section observations of relict olivine grains, and whole rock major and trace element data are also examined to shed light on the causes of the isotopic heterogeneities in the LOC. Data from JOC grid sampling will be presented as well.

Tracking the evolution of a giant magmatic system from assembly to supereruption

NASA Astrophysics Data System (ADS)

Wotzlaw, J. F.; Schaltegger, U.; Frick, D. A.; Dungan, M. A.; Gerdes, A.; Günther, D.

2012-12-01

The chemical and physical characteristics of large magma bodies prior to eruption are closely related consequences of the balance between the rate of magma influx and the rate of cooling. The products of caldera-related silicic supereruptions, and less voluminous associated precursor and post-caldera activity preserve information about the thermal and chemical states of the system at the moment of evacuation of the magma chamber. Numerous studies of the Oligocene Fish Canyon Tuff (5000 km3; Colorado, USA) and related eruptive products of the La Garita caldera have addressed the origin and evolution of large-volume crystal-rich magmas. We use the presence of zircon in all eruptive products of the Fish Canyon magmatic system to gain a high-resolution geochronologic control on the thermal evolution of the magmatic system by using the trace element composition of U-Pb dated zircons as a proxy for magma crystallinity. New analytical protocols permit to obtain age, chemical and isotopic information from the exact same volume of single zircons (Schoene et al., 2010, GCA) allowing us to trace magma crystallinity as a function of time. Zircon U-Pb dates record ~400,000 years of crystallization. Variations in trace element composition in U-Pb dated zircons can be attributed to trace element fractionation imposed by co-crystallization of titanite. Due to the relatively high modal abundance of titanite in Fish Canyon magma and the extreme compatibility of the rare earth elements (REE) in this phase, titanite is the major control on many trace element concentrations and ratios (e.g. Yb/Dy) in coexisting zircons via varying degrees of depletion of these elements in the host melt. Modeling of compositional variations as a result of fractional crystallization suggests that the range of zircon compositions can be explained by 50-70% crystallization of a fractionating assemblage containing 0.4-0.8 vol.% titanite. The period of cooling centered around 28.4 Ma and is marked by an apparent crystallinity that is ~30% higher than at the time of eruption, implying that the Fish Canyon magma was perilously close to complete solidification, hence 'plutonic death', prior to late reheating. We estimate the duration of the reheating event from the age difference of the chemically most evolved (highest Yb/Dy) and the youngest dated zircon to be ~170 ka. This duration for reactivation of the near solidus crystal mush is in excellent agreement with estimates derived from numerical modeling of remelting by upward percolation of a hot gas-phase derived from underplated mafic magma ('gas sparging'; Bachmann and Bergantz, 2003, Geology). This investigation, which is the first in which high resolution U-Pb zircon geochronology has been coupled with geochemical modeling of systematic compositional variations in an accessory mineral, ties together many of the threads which have been developed independently during previous studies of the Fish Canyon magmatic system and places related petrogenetic processes into an absolute time frame.

Repression of P Element-Mediated Hybrid Dysgenesis in Drosophila Melanogaster

PubMed Central

Simmons, M. J.; Raymond, J. D.; Rasmusson, K. E.; Miller, L. M.; McLarnon, C. F.; Zunt, J. R.

1990-01-01

Inbred lines derived from a strain called Sexi were analyzed for their abilities to repress P element-mediated gonadal dysgenesis. One line had high repression ability, four had intermediate ability and two had very low ability. The four intermediate lines also exhibited considerable within-line variation for this trait; furthermore, in at least two cases, this variation could not be attributed to recurring P element movement. Repression of gonadal dysgenesis in the hybrid offspring of all seven lines was due primarily to a maternal effect; there was no evidence for repression arising de novo in the hybrids themselves. In one of the lines, repression ability was inherited maternally, indicating the involvement of cytoplasmic factors. In three other lines, repression ability appeared to be determined by partially dominant or additive chromosomal factors; however, there was also evidence for a maternal effect that reduced the expression of these factors in at least two of the lines. In another line, repression ability seemed to be due to recessive chromosomal factors. All seven lines possessed numerous copies of a particular P element, called KP, which has been hypothesized to produce a polypeptide repressor of gonadal dysgenesis. This hypothesis, however, does not explain why the inbred Sexi lines varied so much in their repression abilities. It is suggested that some of this variation may be due to differences in the chromosomal position of the KP elements, or that other nonautonomous P elements are involved in the repression of hybrid dysgenesis in these lines. PMID:2155854

Anatomy and early development of the pectoral girdle, fin, and fin spine of sturgeons (Actinopterygii: Acipenseridae).

PubMed

Dillman, Casey B; Hilton, Eric J

2015-03-01

Acipenseriformes hold an important place in the evolutionary history of bony fishes. Given their phylogenetic position as extant basal Actinopterygii, it is generally held that a thorough understanding of their morphology will greatly contribute to the knowledge of the evolutionary history and the origin of diversity for the major osteichthyan clades. To this end, we examined comparative developmental series from the pectoral girdle in Acipenser fulvescens, A. medirostris, A. transmontanus, and Scaphirhynchus albus to document, describe, and compare ontogenetic and allometric differences in the pectoral girdle. We find, not surprisingly, broad congruence between taxa in the basic pattern of development of the dermal and chondral elements of the pectoral girdle. However, we also find clear differences in the details of structure and development among the species examined in the dermal elements, including the clavicle, cleithrum, supracleithrum, posttemporal, and pectoral-fin spine. We also find differences in the internal fin elements such as the distal radials as well as in the number of fin rays and their association with the propterygium. Further, there are clear ontogenetic differences during development of the dermal and chondral elements in these species and allometric variation in the pectoral-fin spine. The characters highlighted provide a suite of elements for further examination in studies of the phylogeny of sturgeons. Determining the distribution of these characters in other sturgeons may aid in further resolution of phylogenetic relationships, and these data highlight the role that ontogenetic and comparative developmental studies provide in systematics. © 2014 Wiley Periodicals, Inc.

Occurrence and Distribution of Iron, Manganese, and Selected Trace Elements in Ground Water in the Glacial Aquifer System of the Northern United States

USGS Publications Warehouse

Groschen, George E.; Arnold, Terri L.; Morrow, William S.; Warner, Kelly L.

2009-01-01

Dissolved trace elements, including iron and manganese, are often an important factor in use of ground water for drinking-water supplies in the glacial aquifer system of the United States. The glacial aquifer system underlies most of New England, extends through the Midwest, and underlies portions of the Pacific Northwest and Alaska. Concentrations of dissolved trace elements in ground water can vary over several orders of magnitude across local well networks as well as across regions of the United States. Characterization of this variability is a step toward a regional screening-level assessment of potential human-health implications. Ground-water sampling, from 1991 through 2003, of the National Water-Quality Assessment (NAWQA) Program of the U.S. Geological Survey determined trace element concentrations in water from 847 wells in the glacial aquifer system. Dissolved iron and manganese concentrations were analyzed in those well samples and in water from an additional 743 NAWQA land-use and major-aquifer survey wells. The samples are from monitoring and water-supply wells. Concentrations of antimony, barium, beryllium, cadmium, chromium, cobalt, copper, iron, lead, manganese, molybdenum, nickel, selenium, strontium, thallium, uranium, and zinc vary as much within NAWQA study units (local scale; ranging in size from a few thousand to tens of thousands of square miles) as over the entire glacial aquifer system. Patterns of trace element concentrations in glacial aquifer system ground water were examined by using techniques suitable for a dataset with zero to 80 percent of analytical results reported as below detection. During the period of sampling, the analytical techniques changed, which generally improved the analytical sensitivity. Multiple reporting limits complicated the comparison of detections and concentrations. Regression on Order Statistics was used to model probability distributions and estimate the medians and other quantiles of the trace element concentrations. Strontium and barium were the most frequently detected and usually were present in the highest concentrations. Iron and manganese were the next most commonly detected and next highest in concentrations. Iron concentrations were the most variable with respect to the range of variations (both within local networks and aquifer-wide) and with respect to the disparity between magnitude of concentrations (detections) and the frequency of samples below reporting limits (nondetections). Antimony, beryllium, cadmium, silver, and thallium were detected too infrequently for substantial interpretation of their occurrence or distributions or potential human-health implications. For those elements that were more frequently detected, there are some geographic patterns in their occurrence that primarily reflect climate effects. The highest concentrations of several elements were found in the West-Central glacial framework area (High Plains and northern Plains areas). There are few important patterns for any element in relation to land use, well type, or network type. Shallow land-use (monitor) wells had iron concentrations generally lower than the glacial aquifer system wells overall and much lower than major-aquifer survey wells, which comprise mostly private- and public-supply wells. Unlike those for iron, concentration patterns for manganese were similar among shallow land-use wells and major-aquifer survey wells. An apparent relation between low pH and relatively low concentrations of many elements, except lead, may be more indicative of the relatively low dissolved-solids content in wells in the Northeastern United States that comprise the majority of low pH wells, than of a pH dependent pattern. Iron and manganese have higher concentrations and larger ranges of concentrations especially under more reducing conditions. Dissolved oxygen and well depth were related to iron and manganese concentrations. Redox conditions also affect several trace elements such

Moment free toroidal magnet

DOEpatents

Bonanos, Peter

1983-01-01

A toroidal magnet for confining a high magnetic field for use in fusion reactor research and nuclear particle detection. The magnet includes a series of conductor elements arranged about and fixed at its small major radius portion to the outer surface of a central cylindrical support each conductor element having a geometry such as to maintain the conductor elements in pure tension when a high current flows therein, and a support assembly which redistributes all or part of the tension which would otherwise arise in the small major radius portion of each coil element to the large major radius portion thereof.

GENPLOT: A formula-based Pascal program for data manipulation and plotting

NASA Astrophysics Data System (ADS)

Kramer, Matthew J.

Geochemical processes involving alteration, differentiation, fractionation, or migration of elements may be elucidated by a number of discrimination or variation diagrams (e.g., AFM, Harker, Pearce, and many others). The construction of these diagrams involves arithmetic combination of selective elements (involving major, minor, or trace elements). GENPLOT utilizes a formula-based algorithm (an expression parser) which enables the program to manipulate multiparameter databases and plot XY, ternary, tetrahedron, and REE type plots without needing to change either the source code or rearranging databases. Formulae may be any quadratic expression whose variables are the column headings of the data matrix. A full-screen editor with limited equations and arithmetic functions (spreadsheet) has been incorporated into the program to aid data entry and editing. Data are stored as ASCII files to facilitate interchange of data between other programs and computers. GENPLOT was developed in Turbo Pascal for the IBM and compatible computers but also is available in Apple Pascal for the Apple Ile and Ill. Because the source code is too extensive to list here (about 5200 lines of Pascal code), the expression parsing routine, which is central to GENPLOT's flexibility is incorporated into a smaller demonstration program named SOLVE. The following paper includes a discussion on how the expression parser works and a detailed description of GENPLOT's capabilities.

New Geochemical Analyses Reveal Crustal Accretionary Processes at The Overlapping Spreading Center Near 3 N East Pacific Rise

NASA Astrophysics Data System (ADS)

Smithka, I. N.; Perfit, M. R.

2013-12-01

Mid-ocean ridges (MORs) are the sites of oceanic lithosphere creation and construction. Ridge discontinuities are a global phenomenom but are not as well understood as ridge axes. Geochemical analyses provide insights into upper mantle processes since elements fractionate with melting and freezing as well as reside in material to retain source signature. Lavas collected from ridge discontinuities consist of greater chemical diversity and represent variations in source, melting parameters, and local crustal processes. The small overlapping spreading center (OSC) near the third parallel north on the East Pacific Rise has been superficially analyzed previously, but here we present new isotope analyses and expand our understanding of MOR processes and processes near OSCs. Initial analyses of lavas collected in 2000 on AHA-NEMO2 revealed normal MOR basalt trends in rare earth element enrichments as well as in major element concentrations. Crystal fractionation varies along the tips of both axes, with MgO and TiO2 concentrations increasing towards the OSC basin. Newly analyzed Sr, Nd, and Pb isotope ratios will further constrain the nature of geochemical diversity along axis. As the northern tip seems to be propagating and the southern tip dying, lavas collected from each may reflect two different underlying mantle melting and magma storage processes.

The Chemical Behavior of Fluids Released during Deep Subduction Based on Fluid Inclusions

NASA Astrophysics Data System (ADS)

Frezzotti, M. L.; Ferrando, S.

2014-12-01

We present a review of current research on fluid inclusions in (HP-) UHP metamorphic rocks that, combined with existing experimental research and thermodynamic models, allow us to investigate the chemical and physical properties of fluids released during deep subduction, their solvent and element transport capacity, and the subsequent implications for the element recycling in the mantle wedge. An impressive number of fluid inclusion studies indicate three main populations of fluid inclusions in HP and UHP metamorphic rocks: i) aqueous and/or non-polar gaseous fluid inclusions (FI), ii) multiphase solid inclusions (MSI), and iii) melt inclusions (MI). Chemical data from preserved fluid inclusions in rocks match with and implement "model" fluids by experiments and thermodynamics, revealing a continuity behind the extreme variations of physico-chemical properties of subduction-zone fluids. From fore-arc to sub-arc depths, fluids released by progressive devolatilization reactions from slab lithologies change from relatively diluted chloride-bearing aqueous solutions (± N2), mainly influenced by halide ligands, to (alkali) aluminosilicate-rich aqueous fluids, in which polymerization probably governs the solubility and transport of major (e.g., Si and Al) and trace elements (including C). Fluid inclusion data implement the petrological models explaining deep volatile liberation in subduction zones, and their flux into the mantle wedge.

Geochemical constraints on depth of origin of oceanic carbonatites: The Cape Verde case

NASA Astrophysics Data System (ADS)

Doucelance, Régis; Hammouda, Tahar; Moreira, Manuel; Martins, João C.

2010-12-01

We present new Sr-Nd isotope compositions together with major- and trace element concentrations measured for whole rocks and mineral separate phases (apatite, biotite and calcite) from fifteen Cape Verde oceanic carbonatites (Atlantic Ocean). Trace element patterns of calcio- and magnesio-carbonatites present a strong depletion in K, Hf, Zr and Ti and an overall enrichment in Sr and REE relative to Cape Verde basalts, arguing for distinct source components between carbonatites and basalts. Sr and Nd isotopic ratios show small, but significant variations defining a binary mixing between a depleted end-member with unradiogenic Sr and radiogenic Nd values and a ''enriched'' end-member compatible with old marine carbonates. We interpret the depleted end-member as the Cape Verde oceanic lithosphere by comparison with previous studies on Cape Verde basalts. We thus propose that oceanic carbonatites are resulting from the interaction of a deep rooted mantle plume carrying a lower 4He/ 3He signature from the lower mantle and a carbonated metasomatized lithosphere, which by low degree melting produced carbonatite magmas. Sr-Nd compositions and trace element patterns of carbonatites argue in favor of a metasomatic agent originating from partial melting of recycled, carbonated oceanic crust. We have successfully reproduced the main geochemical features of this model using a Monte-Carlo-type simulation.

Assessment of SOAP note evaluation tools in colleges and schools of pharmacy.

PubMed

Sando, Karen R; Skoy, Elizabeth; Bradley, Courtney; Frenzel, Jeanne; Kirwin, Jennifer; Urteaga, Elizabeth

2017-07-01

To describe current methods used to assess SOAP notes in colleges and schools of pharmacy. Members of the American Association of Colleges of Pharmacy Laboratory Instructors Special Interest Group were invited to share assessment tools for SOAP notes. Content of submissions was evaluated to characterize overall qualities and how the tools assessed subjective, objective, assessment, and plan information. Thirty-nine assessment tools from 25 schools were evaluated. Twenty-nine (74%) of the tools were rubrics and ten (26%) were checklists. All rubrics included analytic scoring elements, while two (7%) were mixed with holistic and analytic scoring elements. A majority of the rubrics (35%) used a four-item rating scale. Substantial variability existed in how tools evaluated subjective and objective sections. All tools included problem identification in the assessment section. Other assessment items included goals (82%) and rationale (69%). Seventy-seven percent assessed drug therapy; however, only 33% assessed non-drug therapy. Other plan items included education (59%) and follow-up (90%). There is a great deal of variation in the specific elements used to evaluate SOAP notes in colleges and schools of pharmacy. Improved consistency in assessment methods to evaluate SOAP notes may better prepare students to produce standardized documentation when entering practice. Copyright © 2017 Elsevier Inc. All rights reserved.

Characterization of food waste-recycling wastewater as biogas feedstock.

PubMed

Shin, Seung Gu; Han, Gyuseong; Lee, Joonyeob; Cho, Kyungjin; Jeon, Eun-Jeong; Lee, Changsoo; Hwang, Seokhwan

2015-11-01

A set of experiments was carried out to characterize food waste-recycling wastewater (FRW) and to investigate annual and seasonal variations in composition, which is related to the process operation in different seasons. Year-round samplings (n=31) showed that FRW contained high chemical oxygen demand (COD; 148.7±30.5g/L) with carbohydrate (15.6%), protein (19.9%), lipid (41.6%), ethanol (14.0%), and volatile fatty acids (VFAs; 4.2%) as major constituents. FRW was partly (62%) solubilized, possibly due to partial fermentation of organics including carbohydrate. Biodegradable portions of carbohydrate and protein were estimated from acidogenesis test by first-order kinetics: 72.9±4.6% and 37.7±0.3%, respectively. A maximum of 50% of the initial organics were converted to three major VFAs, which were acetate, propionate, and butyrate. The methane potential was estimated as 0.562L CH4/g VSfeed, accounting for 90.0% of the theoretical maximum estimated by elemental analysis. Copyright © 2015 Elsevier Ltd. All rights reserved.

Mineralogy and chemistry of the Earth

NASA Technical Reports Server (NTRS)

Anderson, D. L.

1985-01-01

The Earth is the prototype if not typical terrestrial planet. Ideas about the origin, evolution, structure and chemistry of the planets can be tested most thoroughly on the Earth. Similarly, the study of the other planets has generated new ideas which may be applicable to the Earth. For example the concepts of magma oceans, large polar wander, global stress fields, buoyant lithosphere, deep cumulate reservoirs, multiple tectonic styles and crust generation may also apply to the Earth, present or past. It is no longer valid to think of the mantle as an essentially homogeneous undifferentiated shell of olivine with pockes of basalt providing melts to midocean ridges and oceanic islands. It appears to be a well differentiated, outgassed body with both radial and lateral chemical variations. The lower mantle is close to chondritic in its major element chemistry. The transition region is garnet and clinopyroxene rich and may be a major basalt reservoir. This would explain the thin crust paradox. Chemical stratification of the Earth probably occurred during accretion.

Refined genetic maps reveal sexual dimorphism in human meiotic recombination at multiple scales

NASA Astrophysics Data System (ADS)

Bhérer, Claude; Campbell, Christopher L.; Auton, Adam

2017-04-01

In humans, males have lower recombination rates than females over the majority of the genome, but the opposite is usually true near the telomeres. These broad-scale differences have been known for decades, yet little is known about differences at the fine scale. By combining data sets, we have collected recombination events from over 100,000 meioses and have constructed sex-specific genetic maps at a previously unachievable resolution. Here we show that, although a substantial fraction of the genome shows some degree of sexually dimorphic recombination, the vast majority of hotspots are shared between the sexes, with only a small number of putative sex-specific hotspots. Wavelet analysis indicates that most of the differences can be attributed to the fine scale, and that variation in rate between the sexes can mostly be explained by differences in hotspot magnitude, rather than location. Nonetheless, known recombination-associated genomic features, such as THE1B repeat elements, show systematic differences between the sexes.

Transposable genetic elements in Spirulina and potential applications for genetic engineering

NASA Astrophysics Data System (ADS)

Hiroyuki, Kojima; Qin, Song; Thankappan, Ajith Kumar; Yoshikazu, Kawata; Shin-Ichi, Yano

1998-03-01

Transposable elements in cyanobacteria are briefly reviewed. Evidence is presented to show that transposable elements in Spirulina platensis is actually reflected on the phenotype change, i e., helical to straight filaments. Transposition intermediates of DNA were isolated from the extrachromosome and the transposition was related to helical variations in Spirulina. Uses of transposable elements for microalgal recombination are discussed based on the transposition mechanism.

Finite element analysis of time-independent superconductivity. Ph.D. Thesis Final Report

NASA Technical Reports Server (NTRS)

Schuler, James J.

1993-01-01

The development of electromagnetic (EM) finite elements based upon a generalized four-potential variational principle is presented. The use of the four-potential variational principle allows for downstream coupling of EM fields with the thermal, mechanical, and quantum effects exhibited by superconducting materials. The use of variational methods to model an EM system allows for a greater range of applications than just the superconducting problem. The four-potential variational principle can be used to solve a broader range of EM problems than any of the currently available formulations. It also reduces the number of independent variables from six to four while easily dealing with conductor/insulator interfaces. This methodology was applied to a range of EM field problems. Results from all these problems predict EM quantities exceptionally well and are consistent with the expected physical behavior.

Numerical model of the evolution of asteroid orbits at the 2:5 resonance

NASA Astrophysics Data System (ADS)

Ipatov, S. I.

1992-12-01

The interrelations of the variations in the orbital elements of asteroids at the 2:5 resonance and in its vicinity are investigated.. These investigations are based on the numerical integration of the complete equations of motion of the three-body problem (sun-Jupiter-asteroid) for 500 model asteroids. The time interval under consideration for most versions of the calculations equaled 10(4) orbital periods of Jupiter. The limits of the variations in the orbital elements and the regions of initial data corresponding to different types of interrelations of the variations in the eccentricity and longitude of perihelion are examined. It is shown that thr 2:5 gap may play a larger role than other gaps in the replenishment of the Apollo and Amor groups. The time over which the argument of perihelion changed by 360 degrees was usually equal to two periods of variation in the orbital inclination. When this interrelation was not found, the time over which the longitude of the ascending node changed by 360 degrees was equal, as a rule, to one period of variation in this inclination. For some asteroids moving along orbits of small eccentricity and inclination, interrelations were found between the periods of variation in four orbital elements: eccentricity, inclination, argument of perihelion, and longitude of the ascending node. For initial inclinations i° = 40° of asteroid orbits, the maximum values of inclinations of some model asteroids reached 160 degrees. Such asteroids could reach the sun or nearly parabolic orbits.

Association of zygotic piRNAs derived from paternal P elements with hybrid dysgenesis in Drosophila melanogaster.

PubMed

Wakisaka, Keiko Tsuji; Ichiyanagi, Kenji; Ohno, Seiko; Itoh, Masanobu

2018-01-01

P -element transposition in the genome causes P-M hybrid dysgenesis in Drosophila melanogaster . Maternally deposited piRNAs suppress P -element transposition in the progeny, linking them to P-M phenotypes; however, the role of zygotic piRNAs derived from paternal P elements is poorly understood. To elucidate the molecular basis of P -element suppression by zygotic factors, we investigated the genomic constitution and P -element piRNA production derived from fathers. As a result, we characterized males of naturally derived Q, M' and P strains, which show different capacities for the P -element mobilizations introduced after hybridizations with M-strain females. The amounts of piRNAs produced in ovaries of F1 hybrids varied among the strains and were influenced by the characteristics of the piRNA clusters that harbored the P elements. Importantly, while both the Q- and M'-strain fathers restrict the P -element mobilization in ovaries of their daughters, the Q-strain fathers supported the production of the highest piRNA expression in the ovaries of their daughters, and the M' strain carries KP elements in transcriptionally active regions directing the highest expression of KP elements in their daughters. Interestingly, the zygotic P -element piRNAs, but not the KP element mRNA, contributed to the variations in P transposition immunity in the granddaughters. The piRNA-cluster-embedded P elements and the transcriptionally active KP elements from the paternal genome are both important suppressors of P element activities that are co-inherited by the progeny. Expression levels of the P -element piRNA and KP -element mRNA vary among F1 progeny due to the constitution of the paternal genome, and are involved in phenotypic variation in the subsequent generation.

Compositional Variation in Apollo 16 Impact-Melt Breccias and Inferences for the Geology and Bombardment History of the Central Highlands of the Moon

NASA Technical Reports Server (NTRS)

Korotev, Randy L.

1994-01-01

High-precision data for the concentrations of a number of lithophile and siderophile elements were obtained on multiple subsamples from 109 impact-melt rocks and breccias (mostly crystalline) from the Apollo 16 site. Compositions of nearly all Apollo 16 melt rocks fall on one of two trends of increasing Sm concentration with increasing Sc concentration. The Eastern trend (lower Sm/Sc, Mg/Fe, and Sm/Yb ratios) consists of compositional groups 3 and 4 of previous classification schemes. These melt rocks are feldspathic, poor in incompatible and siderophile elements, and appear to have provenance in the Descartes formation to the east of the site. The Western trend (higher Sm/Sc. Mg/Fe, and Sm/ Yb ratios) consists of compositional groups 1 and 2. These relatively mafic, KREEP-bearing breccias are a major component (approx.35%) of the Cayley plains west of the site and are unusual, compared to otherwise similar melt breccias from other sites, in having high concentrations of Fe-Ni metal ( 1-2 %). The metal is the carrier of the low-Ir/Au (approx. 0.3 x chondritic) siderophile-element signature that is characteristic of the Apollo 16 site. Four compositionally distinct groups (1M, 1F, 2DB, and 2NR) of Western-trend melt breccias occur that are each represented by at least six samples. Compositional group 1 or previous classification schemes (the 'poikilitic' or 'LKFM' melt breccias) can be subdivided into two groups. Group 1M (represented by six samples, including 60315) is characterized by lower Al2O3 concentrations, higher MgO and alkali concentrations, and higher Mg/Fe and Cr/Sc ratios than group 1F (represented by fifteen samples, including 65015). Group 1M also has siderophile-element concentrations averaging about twice those of group lF and Ir/Au and Ir/Ni ratios that are even lower than those of other Western-trend melt rocks (Ir/Au = 0.24 +/- 0.03. CI-normalized). At the mafic extreme of group 2 ('VHA' melt breccias), the melt lithology occurring as clasts in feldspathic fragmental breccias from North Ray crater (group 2NR) is compositionally distinct from the melt lithology ofdimict breccias from the Cayley plains (group 2DB) in having higher concentrations of Sc, Cr, and heavy rare earth elements and lower concentrations of siderophile elements. The distinct siderophile-element signature (high absolute abundances, low Ir/Au ratio) suggest that the four groups ofmafic melt breccia are all somehow related. Ratios ofsome lithophile elements also suggest that they are more closely related to each other than then, are to melt breccias from other Apoll sites. However, none of the breccia compositions can be related to any of the others by any simple process of igneous fractionation or mixing involving common lunar materials. Thus, the origin of the four groups of mafic melt breccia is enigmatic. If they were produced in only one or two impacts, then a mechanism exists for generating regimes of impact-melt breccia in a single impact that are substantially different from each other in composition. For various reasons, including the problem of delivering large volumes of four different types of melt to the Apollo 16 site, it is unlikely that any of these breccias were produced in basin-forming impacts. If they were produced in as many as four crater-forming impacts, then the unusual siderophile-element signature is difficult to explain. Possible explanations are (1) the four groups of melt breccia all contain metal from a single, earlier impact, (2) they were each formed by related metal-rich meteoroids, or (3) some common postimpact process has resulted in metal of similar composition in each of four melt pools. Within a compositional group, most intrasample and intersample variation in lithophile element concentrations is caused by differences among samples in the proportion of a component of normative anorthosite or noritic anorthosite. In most cases, this compositional variation probably reflects variation in clast abundance. For group 2DB (and probably 2NR), differences in abundance of a component of ferroan anorthosite (estimated Al2O3 approx. 32%) accounts for the compositional variation. For groups 1M and 1F, the anorthositic component is more mafic (estimated Al203 approx. 26%). Some group-2 samples may be related by a troctolitic component of varying abundance.

Across-arc versus along-arc Sr-Nd-Pb isotope variations in the Ecuadorian volcanic arc

NASA Astrophysics Data System (ADS)

Ancellin, Marie-Anne; Samaniego, Pablo; Vlastélic, Ivan; Nauret, François; Gannoun, Adbelmouhcine; Hidalgo, Silvana

2017-03-01

Previous studies of the Ecuadorian arc (1°N-2°S) have revealed across-arc geochemical trends that are consistent with a decrease in mantle melting and slab dehydration away from the trench. The aim of this work is to evaluate how these processes vary along the arc in response to small-scale changes in the age of the subducted plate, subduction angle, and continental crustal basement. We use an extensive database of 1437 samples containing 71 new analyses, of major and trace elements as well as Sr-Nd-Pb isotopes from Ecuadorian and South Colombian volcanic centers. Large geochemical variations are found to occur along the Ecuadorian arc, in particular along the front arc, which encompasses 99% and 71% of the total variations in 206Pb/204Pb and 87Sr/86Sr ratios of Quaternary Ecuadorian volcanics, respectively. The front arc volcanoes also show two major latitudinal trends: (1) the southward increase of 207Pb/204Pb and decrease of 143Nd/144Nd reflect more extensive crustal contamination of magma in the southern part (up to 14%); and (2) the increase of 206Pb/204Pb and decrease of Ba/Th away from ˜0.5°S result from the changing nature of metasomatism in the subarc mantle wedge with the aqueous fluid/siliceous slab melt ratio decreasing away from 0.5°S. Subduction of a younger and warmer oceanic crust in the Northern part of the arc might promote slab melting. Conversely, the subduction of a colder oceanic crust south of the Grijalva Fracture Zone and higher crustal assimilation lead to the reduction of slab contribution in southern part of the arc.

The effect of segregation on the austemper transformation and toughness of ductile irons

NASA Astrophysics Data System (ADS)

Lin, B. Y.; Chen, E. T.; Lei, T. S.

1998-06-01

The effect of segregation of alloying elements on the phase transformation of ductile iron during austempering was investigated. Four heats, each containing 0.4%Mn, 1% Cu, 1.5% Ni, or 0.4% Mo (wt%) separately, were melted; then three different sizes of casting bars (3,15, and 75 mm diameter) were poured from each heat. The distribution and the degree of segregation of certain elements were quantitatively analyzed using an electron microprobe. A personal computer (PC)-controlled heat treating system was used to measure electrical resistivity, and the information on resistivity variations was used to analyze the effect of segregation on phase transformations during austempering. Also, Charpy impact and Rockwell hardness tests were performed to determine the effect of segregation on properties. Results of the electron microprobe analysis showed that the degree of segregation of alloy elements increases with an increase in diameter of the casting bars (i.e., an increase of solidification time of castings). The degree of segregation of alloy elements, represented by segregation ratio (SR) (the maximum concentration of element in cell divided by the minimum concentration of element in cell), varied linearly with the casting modulus (M) (volume of casting divided by surface area of casting). Regarding the segregating tendency among alloy elements, positive segregating elements Mn and Mo showed more segregation than the negative segregating elements Si, Cu, and Ni. In addition, segregation of Mo was more significant than Mn, and that for Cu was greater than Ni and Si. Between the time of finishing the first stage and beginning the second stage of bainite reaction in ductile irons, there is a significant “processing window,” At;, for austempering to obtain optimum mechanical properties. From the electrical resistivity data, it was observed that the austempering temperature plays a major role in the processing window. There was a narrow window at 400 ‡C but a larger one at 350 ‡C. Additionally, the microsegregation of alloying elements led to variation of the time of phase transformation for various regions in the grain cells of ductile iron which caused the processing window to decrease. The span of the processing window decreased with an increase in degree of segregation. There was no significant difference in the hardness of the alloys in various diameter specimens. However, the impact toughness was significantly affected by the segregation. The impact values in 15 mm specimens with less degree of segregation were greater than those in 75 mm specimens with significant segregation. The Ni, Cu, and Mn alloys that were austempered to complete the first stage of bainite formation had approximately the same impact values for all diameter samples. The Mo alloy upon austempering produced no bainite, but it had much untransformed retained austenite in the intercellular regions and, therefore, had lower impact values.

Multiple Lava Types Erupted Over Short Spatial and Temporal Scales at the Southern East Pacific Rise: 17° 23'-17° 35'S

NASA Astrophysics Data System (ADS)

Bergmanis, E. C.; Sinton, J. M.; Rubin, K. H.

2003-12-01

Major, trace element and U-series disequilibria data reveal both short- and long-term compositional heterogeneity in lavas from the southern EPR 17° 23'-17° 35'S. Major-element compositional variation in the ˜18km-long Aldo-Kihi flow (MgO 7.7-8.4 wt %) is consistent with shallow-level fractional crystallization. (230Th)/(238U) disequilibria for samples from the Aldo-Kihi flow cover a narrow range of 1.85+/-0.15. However, the range of Th/U ratios (2.61-2.84) and (226Ra)/(230Th) disequilibria (2.26-2.65) are very broad for a single eruptive unit and cannot be a result of shallow-level fractional crystallization of a single magma composition. MgO contents, Th/U ratios, and (226Ra)/(230Th) disequilibria for Aldo-Kihi samples all peak at ˜17° 30.6'S and generally are greater for samples south of 17° 30'S implying that more than one magmatic component has contributed to this lava flow. This along-axis compositional diversity is hard to reconcile with propagation of a dike originating from a small area, and suggests vertical eruption from a magma chamber that is compositionally zoned along-axis. Along this ˜22km-long section of the southern EPR, major, trace element and U-series disequilibria data indicate that at least six compositionally distinct lava types are present within 1km of the axis. (210Pb)/(226Ra) deficits of ˜5 % for the Aldo-Kihi lava and two other compositionally distinct units suggest they are substantially younger than ˜100 yrs. Although geologic relationships demonstrate that Aldo-Kihi is the youngest of these, the range of (210Pb)/(230Ra) disequilibria for the individual units overlap making relative age determinations impossible using that criteria alone. Regional trends in major-element data show that twenty-three other samples older than Aldo-Kihi contain >8.0 wt % MgO; all but two occur south of 17° 28.4'S suggesting that the location of hottest sub-axial magma is a long-lived feature of this region. The distribution of rock types in this area requires a complex history of mantle melting, recharge, cooling, and eruption that varies considerably over along-axis distances of ˜22 kilometers and between successive eruptions.

The Pasamonte unequilibrated eucrite: Pyroxene REE systematic and major-, minor-, and trace-element zoning. [Abstract only

NASA Technical Reports Server (NTRS)

Pun, A.; Papike, J. J.

1994-01-01

We are evaluating the trace-element concentrations in the pyroxenes of Pasamonte. Pasamonte is a characteristic member of the main group eucrites, and has recently been redescribed as a polymict eucrite. Our Pasamonte sample contained eucritic clasts with textures ranging from subophitic to moderately coarse-grained. This study concentrates on pyroxenes from an unequilibrated, coarse-grained eucrite clast. Major-, minor-, and trace-element analyses were measured for zoned pyroxenes in the eucritic clast of Pasamonte. The major- and minor-element zoning traverses were measured using the JEOL 733 electron probe with an Oxford-Link imaging/analysis system. Complemenatry trace elements were then measured for the core and rim of each of the grains by SIMS. The trace elements analyzed consisted of eight REE, Sr, Y, and Zr. These analyses were performed on a Cameca 4f ion probe. The results of the CI chondrite normalized (average CI trace-element analyses for several grains and the major- and minor-element zoning patterns from a single pyroxene grain are given. The Eu abundance in the cores of the pyroxenes represents the detection limit and therefore the (-Eu) anomaly is a minimum. Major- and minor-element patterns are typical for igneous zoning. Pyroxene cores are Mg enriched, whereas the rims are enriched in Fe and Ca. Also, Ti and Mn are found to increase, while Cr and Al generally decrease in core-to-rim traverses. The cores of the pyroxenes are more depleted in the Rare Earth Elements (REE) than the rims. Using the minor- and trace-element concentrations of bulk Pasamonte and the minor- and trace-element concentrations from the cores of the pyroxenes in Pasamonte measured in this study, we calculated partition coefficients between pyroxene and melt. This calculation assumes that bulk Pasamonte is representative of a melt composition.

Fast acting multiple element valve

DOEpatents

Yang, Jefferson Y. S.; Wada, James M.

1991-01-01

A plurality of slide valve elements having plural axial-spaced annular parts and an internal slide are inserted into a bulkhead in a fluid conduit from a downstream side of the bulkhead, locked in place by a bayonet coupling and set screw, and project through the bulkhead into the upstream conduit. Pneumatic lines connecting the slide valve element actuator to pilot valves are brought out the throat of the valve element to the downstream side. Pilot valves are radially spaced around the exterior of the valve to permit the pneumatic lines to be made identical, thereby to minimize adverse timing tolerances in operation due to pressure variations. Ring manifolds surround the valve adjacent respective pilot valve arrangements to further reduce adverse timing tolerances due to pressure variations, the manifolds being directly connected to the respective pilot valves. Position sensors are provided the valve element slides to signal the precise time at which a slide reaches or passes through a particular point in its stroke to initiate a calibrated timing function.

The MHOST finite element program: 3-D inelastic analysis methods for hot section components. Volume 1: Theoretical manual

NASA Technical Reports Server (NTRS)

Nakazawa, Shohei

1991-01-01

Formulations and algorithms implemented in the MHOST finite element program are discussed. The code uses a novel concept of the mixed iterative solution technique for the efficient 3-D computations of turbine engine hot section components. The general framework of variational formulation and solution algorithms are discussed which were derived from the mixed three field Hu-Washizu principle. This formulation enables the use of nodal interpolation for coordinates, displacements, strains, and stresses. Algorithmic description of the mixed iterative method includes variations for the quasi static, transient dynamic and buckling analyses. The global-local analysis procedure referred to as the subelement refinement is developed in the framework of the mixed iterative solution, of which the detail is presented. The numerically integrated isoparametric elements implemented in the framework is discussed. Methods to filter certain parts of strain and project the element discontinuous quantities to the nodes are developed for a family of linear elements. Integration algorithms are described for linear and nonlinear equations included in MHOST program.

Rare earth elements minimal harvest year variation facilitates robust geographical origin discrimination: The case of PDO "Fava Santorinis".

PubMed

Drivelos, Spiros A; Danezis, Georgios P; Haroutounian, Serkos A; Georgiou, Constantinos A

2016-12-15

This study examines the trace and rare earth elemental (REE) fingerprint variations of PDO (Protected Designation of Origin) "Fava Santorinis" over three consecutive harvesting years (2011-2013). Classification of samples in harvesting years was studied by performing discriminant analysis (DA), k nearest neighbours (κ-NN), partial least squares (PLS) analysis and probabilistic neural networks (PNN) using rare earth elements and trace metals determined using ICP-MS. DA performed better than κ-NN, producing 100% discrimination using trace elements and 79% using REEs. PLS was found to be superior to PNN, achieving 99% and 90% classification for trace and REEs, respectively, while PNN achieved 96% and 71% classification for trace and REEs, respectively. The information obtained using REEs did not enhance classification, indicating that REEs vary minimally per harvesting year, providing robust geographical origin discrimination. The results show that seasonal patterns can occur in the elemental composition of "Fava Santorinis", probably reflecting seasonality of climate. Copyright © 2016 Elsevier Ltd. All rights reserved.

What is the Time Scale for Orbital Forcing of the Martian Water Cycle?

NASA Technical Reports Server (NTRS)

Hecht, M. H.

2003-01-01

Calculation of the periodic variations in the martian orbital parameters by Ward and subsequent refinements to the theory have inspired numerous models of variation of the martian water cycle. Most of these models have focused on variations in planetary obliquity on a both a short-term (110 kyr) time scale as well as larger oscillations occuring over millions of years. To a lesser extent, variations in planetary eccentricity have also been considered. The third and fastest mode of variation, the precession of the longitude of perihelion, has generally been deemphasized because, among the three parameters, it is the only one that does not change the integrated annual insolation. But as a result of this precession, the asymmetry in peak summer insolation between the poles exceeds 50%, with the maximum cycling between poles every 25.5 kyrs. The relative contribution of these different elements to orbital forcing of climate takes on particular importance in the context of apparently recent waterrelated features such as gullies or polar layered deposits (PLD). Christensen, for example, recently indentified mantling of heavily gullied crater walls as residual dust-covered snow deposits that were responsible for the formation of the gullies in a previous epoch. Christensen assumed that the snow was originally deposited at a period of high obliquity which was stabilized against sublimation by a lag deposit of dust. It is suggested here that not obliquity, but the shortterm oscillations associated with precession of the perihelion may play the dominant role in the formation of gullies, major strata in the polar layered deposits (PLD), and other water-related features.

Radiogenic Isotopes in Weathering and Hydrology

NASA Astrophysics Data System (ADS)

Blum, J. D.; Erel, Y.

2003-12-01

There are a small group of elements that display variations in their isotopic composition, resulting from radioactive decay within minerals over geological timescales. These isotopic variations provide natural fingerprints of rock-water interactions and have been widely utilized in studies of weathering and hydrology. The isotopic systems that have been applied in such studies are dictated by the limited number of radioactive parent-daughter nuclide pairs with half-lives and isotopic abundances that result in measurable differences in daughter isotope ratios among common rocks and minerals. Prior to their application to studies of weathering and hydrology, each of these isotopic systems was utilized in geochronology and petrology. As in the case of their original introduction into geochronology and petrology, isotopic systems with the highest concentrations of daughter isotopes in common rocks and minerals and systems with the largest observed isotopic variations were introduced first and have made the largest impact on our understanding of weathering and hydrologic processes. Although radiogenic isotopes have helped elucidate many important aspects of weathering and hydrology, it is important to note that in almost every case that will be discussed in this chapter, our fundamental understanding of these topics came from studies of variations in the concentrations of major cations and anions. This chapter is a "tools chapter" and thus it will highlight applications of radiogenic isotopes that have added additional insight into a wide spectrum of research areas that are summarized in almost all of the other chapters of this volume.The first applications of radiogenic isotopes to weathering processes were based on studies that sought to understand the effects of chemical weathering on the geochronology of whole-rock samples and geochronologically important minerals (Goldich and Gast, 1966; Dasch, 1969; Blaxland, 1974; Clauer, 1979, 1981; Clauer et al., 1982); as well as on the observation that radiogenic isotopes are sometimes preferentially released compared to nonradiogenic isotopes of the same element during acid leaching of rocks ( Hart and Tilton, 1966; Silver et al., 1984; Erel et al., 1991). A major finding of these investigations was that weathering often results in anomalously young Rb-Sr isochron ages, and discordant Pb-Pb ages. Rubidium is generally retained relative to strontium in whole-rock samples, and in some cases radiogenic strontium and lead are lost preferentially to common strontium and lead from weathered minerals.The most widely utilized of these isotopic systems is Rb-Sr, followed by U-Pb. The K-Ar system is not directly applicable to most studies of rock-water interaction, because argon is a noble gas, and upon release during mineral weathering mixes with atmospheric argon, limiting its usefulness as a tracer in most weathering applications. Argon and other noble gas isotopes have, however, found important applications in hydrology (see Chapter 5.15). Three other isotopic systems commonly used in geochronology and petrology include Sm-Nd, Lu-Hf, and Re-Os. These parent and daughter elements are in very low abundance and concentrated in trace mineral phases. Sm-Nd, Lu-Hf, and Re-Os have been used in a few weathering studies but have not been utilized extensively in investigations of weathering and hydrology.The decay of 87Rb to 87Sr has a half-life of 48.8 Gyr, and this radioactive decay results in natural variability in the 87Sr/86Sr ratio in rubidium-bearing minerals (e.g., Blum, 1995). The trace elements rubidium and strontium are geochemically similar to the major elements potassium and calcium, respectively. Therefore, minerals with high K/Ca ratios develop high 87Sr/86Sr ratios over geologic timescales. Once released into the hydrosphere, strontium retains its isotopic composition without significant fractionation by geochemical or biological processes, and is therefore a good tracer for sources and cycling of calcium. The decay of 235U to 207Pb, 238U to 206Pb, and 232Th to 208Pb have half-lives of 0.704 Gyr, 4.47 Gyr, and 14.0 Gyr, respectively, and result in variations in the 207Pb/204Pb, 206Pb/204Pb, and 208Pb/204Pb ratios (e.g., Blum, 1995). Uranium-234 has a half-life of 0.25 Myr and the ratio 234U/238U approaches a constant secular equilibrium value in rocks and minerals if undisturbed for ˜1 Myr. Differences in this ratio are often observed in solutions following rock-water interaction and have been used in studies of weathering and hydrology. Uranium and thorium tend to be highly concentrated in the trace accessory minerals such as zircon, monazite, apatite, and sphene, which therefore develop high 206Pb/204Pb, 207Pb/204Pb, and 208Pb/204Pb ratios. Once released into the hydrosphere, lead retains its isotopic composition without significant geochemical or biological fractionation and tends to generally follow the chemistry of iron in soils and aqueous systems (Erel and Morgan, 1992). The use of the U-Th disequilibrium series as a dating tool falls outside the scope of this chapter and is reviewed in Chapters 6.14 and 6.17 as well as Chapter 3.15. The decay of 147Sm to 143Nd, 176Lu to 176Hf, and 187Re to 187Os have half-lives of 106 Gyr, 35.7 Gyr, and 42.3 Gyr, respectively, and result in natural variability in the 144Nd/143Nd, 176Hf/177Hf, and 187Os/188Os ratios (e.g., Blum, 1995). Neodymium is a rare earth element (REE), hafnium is a transition metal with chemical similarities to zirconium, and osmium is a platinum group element. The geochemical behaviors of these elements in the hydrosphere are largely determined by these chemical affinities.

Evaluation of an improved finite-element thermal stress calculation technique

NASA Technical Reports Server (NTRS)

Camarda, C. J.

1982-01-01

A procedure for generating accurate thermal stresses with coarse finite element grids (Ojalvo's method) is described. The procedure is based on the observation that for linear thermoelastic problems, the thermal stresses may be envisioned as being composed of two contributions; the first due to the strains in the structure which depend on the integral of the temperature distribution over the finite element and the second due to the local variation of the temperature in the element. The first contribution can be accurately predicted with a coarse finite-element mesh. The resulting strain distribution can then be combined via the constitutive relations with detailed temperatures from a separate thermal analysis. The result is accurate thermal stresses from coarse finite element structural models even where the temperature distributions have sharp variations. The range of applicability of the method for various classes of thermostructural problems such as in-plane or bending type problems and the effect of the nature of the temperature distribution and edge constraints are addressed. Ojalvo's method is used in conjunction with the SPAR finite element program. Results are obtained for rods, membranes, a box beam and a stiffened panel.

Information Summary, Area of Concern: Grand Calumet River, Indiana

DTIC Science & Technology

1991-03-01

Indiana Harbor and Adjacent Lake Michigan (Source Rl, Table 4) 10 Concentrations of 26 Major, Minor and Trace Elements in Sediments from Indiana Harbor...2 Dec 84 (Source R39, Table 2) 68 Concentrations of Major, Minor , and Trace Elements in Fish and Crayfish from Indiana Harbor and Adjacent Lake...Table 21b) 71 Catch per Unit Effort in Crayfish Traps (Source Rl, Table 21c) 72 Concentratiors of Major, Minor , and Trace Elements in Periphyton and

Compositional variations of ignimbrite magmas in the Central Andes over the past 26 Ma - A multivariate statistical perspective

NASA Astrophysics Data System (ADS)

Brandmeier, M.; Wörner, G.

2016-10-01

Multivariate statistical and geospatial analyses based on a compilation of 890 geochemical and 1200 geochronological data for 194 mapped ignimbrites from the Central Andes document the compositional and temporal patterns of large-volume ignimbrites (so-called "ignimbrite flare-ups") during Neogene times. Rapid advances in computational science during the past decade led to a growing pool of algorithms for multivariate statistics for large datasets with many predictor variables. This study applies cluster analysis (CA) and linear discriminant analysis (LDA) on log-ratio transformed data with the aim of (1) testing a tool for ignimbrite correlation and (2) distinguishing compositional groups that reflect different processes and sources of ignimbrite magmatism during the geodynamic evolution of the Central Andes. CA on major and trace elements allows grouping of ignimbrites according to their geochemical characteristics into rhyolitic and dacitic "end-members" and to differentiate characteristic trace element signatures with respect to Eu anomaly, depletions in middle and heavy rare earth elements (REE) and variable enrichments in light REE. To highlight these distinct compositional signatures, we applied LDA to selected ignimbrites for which comprehensive datasets were available. In comparison to traditional geochemical parameters we found that the advantage of multivariate statistics is their capability of dealing with large datasets and many variables (elements) and to take advantage of this n-dimensional space to detect subtle compositional differences contained in the data. The most important predictors for discriminating ignimbrites are La, Yb, Eu, Al2O3, K2O, P2O5, MgO, FeOt, and TiO2. However, other REE such as Gd, Pr, Tm, Sm, Dy and Er also contribute to the discrimination functions. Significant compositional differences were found between (1) the older (> 13 Ma) large-volume plateau-forming ignimbrites in northernmost Chile and southern Peru and (2) the younger (< 10 Ma) Altiplano-Puna-Volcanic-Complex (APVC) ignimbrites that are of similar volumes. Older ignimbrites are less depleted in HREE and less radiogenic in Sr isotopes, indicating smaller crustal contributions during evolution in a thinner and thermally less evolved crust. These compositional variations indicate a relation to crustal thickening with a "transition" from plagioclase to amphibole and garnet residual mineralogy between 13 and 9 Ma. Compositional and volumetric variations correlate to the N-S passage of the Juan-Fernandéz-Ridge, crustal shortening and thickening, and increased average crustal temperatures during the past 26 Ma. Table DR2 Mapped ignimbrite sheets.

Seasonally-resolved trace element concentrations in stalagmites from a shallow cave in New Mexico

NASA Astrophysics Data System (ADS)

Sekhon, N.; Banner, J.; Miller, N. R.; Carlson, P. E.; Breecker, D.

2017-12-01

High-resolution (sub-annual/seasonal) paleoclimate records extending beyond the instrumental period are required to test climate models and better understand how climate warming/cooling and wetting/drying are manifested seasonally. This is particularly the case for areas such as the southwest United States where precipitation and temperature seasonality dictate the regional climate. Study of a 20thcentury stalagmite (Carlson et al., in prep) documented (1) seasonal variation in trace element compositions of a stalagmite from a shallow, well-ventilated cave and (2) demonstrated the seasonal variation in stalagmite Mg to be in agreement with predicted temperature-dependent fractionation between water and calcite. The seasonal nature of variability was constrained by monitoring the cave on a monthly basis (Casteel and Banner, 2015; Carlson et al., in prep). Here we expand on using stalagmites from shallow, well-ventilated caves as archives of seasonally-resolved climate recorders by studying trace element variations in two coeval modern stalagmites (SBFC-1 and SBFC-2) cored from Sitting Bull Falls, southern New Mexico. Seasonal cycles will be confirmed by analyzing Mg, Ba, and Sr in in-situ calcite precipitated on artificial substrates as available (July, Sept., and Nov. 2017). The chronology is constrained by semi-automated peak counting and 14C bomb-peak. In addition, principal component analyses of trace element data identify two primary underlying modes of trace element variability for soil-derived elements (Cu, Zn, and Fe) and bedrock-derived elements (Mg, Sr, and Ba). We hypothesize that the soil-derived elements are transported by seasonal infiltration of organic colloids and the bedrock-derived elements are ­­controlled by variability in cave air temperature, drip water, and calcite growth rate. The two modes of variability will be calibrated against instrumental data over the 20th century. When complete, these new seasonally resolved proxy records will constrain the pattern and mechanism of the regional climate in southwest United States with a focus on drought indicators.

Authentication of Kalix (N.E. Sweden) vendace caviar using inductively coupled plasma-based analytical techniques: evaluation of different approaches.

PubMed

Rodushkin, I; Bergman, T; Douglas, G; Engström, E; Sörlin, D; Baxter, D C

2007-02-05

Different analytical approaches for origin differentiation between vendace and whitefish caviars from brackish- and freshwaters were tested using inductively coupled plasma double focusing sector field mass spectrometry (ICP-SFMS) and multi-collector inductively coupled plasma mass spectrometry (MC-ICP-MS). These approaches involve identifying differences in elemental concentrations or sample-specific isotopic composition (Sr and Os) variations. Concentrations of 72 elements were determined by ICP-SFMS following microwave-assisted digestion in vendace and whitefish caviar samples from Sweden (from both brackish and freshwater), Finland and USA, as well as in unprocessed vendace roe and salt used in caviar production. This data set allows identification of elements whose contents in caviar can be affected by salt addition as well as by contamination during production and packaging. Long-term method reproducibility was assessed for all analytes based on replicate caviar preparations/analyses and variations in element concentrations in caviar from different harvests were evaluated. The greatest utility for differentiation was demonstrated for elements with varying concentrations between brackish and freshwaters (e.g. As, Br, Sr). Elemental ratios, specifically Sr/Ca, Sr/Mg and Sr/Ba, are especially useful for authentication of vendace caviar processed from brackish water roe, due to the significant differences between caviar from different sources, limited between-harvest variations and relatively high concentrations in samples, allowing precise determination by modern analytical instrumentation. Variations in the 87Sr/86Sr ratio for vendace caviar from different harvests (on the order of 0.05-0.1%) is at least 10-fold less than differences between caviar processed from brackish and freshwater roe. Hence, Sr isotope ratio measurements (either by ICP-SFMS or by MC-ICP-MS) have great potential for origin differentiation. On the contrary, it was impossible to differentiate between Swedish caviar processed from brackish water roe and Finnish freshwater caviar based solely on 187Os/188Os ratios.

Applications of numerical methods to simulate the movement of contaminants in groundwater.

PubMed Central

Sun, N Z

1989-01-01

This paper reviews mathematical models and numerical methods that have been extensively used to simulate the movement of contaminants through the subsurface. The major emphasis is placed on the numerical methods of advection-dominated transport problems and inverse problems. Several mathematical models that are commonly used in field problems are listed. A variety of numerical solutions for three-dimensional models are introduced, including the multiple cell balance method that can be considered a variation of the finite element method. The multiple cell balance method is easy to understand and convenient for solving field problems. When the advection transport dominates the dispersion transport, two kinds of numerical difficulties, overshoot and numerical dispersion, are always involved in solving standard, finite difference methods and finite element methods. To overcome these numerical difficulties, various numerical techniques are developed, such as upstream weighting methods and moving point methods. A complete review of these methods is given and we also mention the problems of parameter identification, reliability analysis, and optimal-experiment design that are absolutely necessary for constructing a practical model. PMID:2695327

Horizontal acquisition of transposable elements and viral sequences: patterns and consequences.

PubMed

Gilbert, Clément; Feschotte, Cédric

2018-04-01

It is becoming clear that most eukaryotic transposable elements (TEs) owe their evolutionary success in part to horizontal transfer events, which enable them to invade new species. Recent large-scale studies are beginning to unravel the mechanisms and ecological factors underlying this mode of transmission. Viruses are increasingly recognized as vectors in the process but also as a direct source of genetic material horizontally acquired by eukaryotic organisms. Because TEs and endogenous viruses are major catalysts of variation and innovation in genomes, we argue that horizontal inheritance has had a more profound impact in eukaryotic evolution than is commonly appreciated. To support this proposal, we compile a list of examples, including some previously unrecognized, whereby new host functions and phenotypes can be directly attributed to horizontally acquired TE or viral sequences. We predict that the number of examples will rapidly grow in the future as the prevalence of horizontal transfer in the life cycle of TEs becomes even more apparent, firmly establishing this form of non-Mendelian inheritance as a consequential facet of eukaryotic evolution. Copyright © 2018 Elsevier Ltd. All rights reserved.

Calculations of hydrogen diffusivity in Zr-based alloys: Influence of alloying elements and effect of stress

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yu, J.; Jiang, C.; Zhang, Y.

This report summarizes the progress on modeling hydrogen diffusivity in Zr-based alloys. The presence of hydrogen (H) can detrimentally affect the mechanical properties of many metals and alloys. To mitigate these detrimental effects requires fundamental understanding of the thermodynamics and kinetics governing H pickup and hydride formation. In this work, we focus on H diffusion in Zr-based alloys by studying the effects of alloying elements and stress, factors that have been shown to strongly affect H pickup and hydride formation in nuclear fuel claddings. A recently developed accelerated kinetic Monte Carlo method is used for the study. It is foundmore » that for the alloys considered here, H diffusivity depends weakly on composition, with negligible effect at high temperatures in the range of 600-1200 K. Therefore, the small variation in compositions of these alloys is likely not a major cause of the very different H pickup rates. In contrast, stress strongly affects H diffusivity. This effect needs to be considered for studying hydride formation and delayed hydride cracking.« less

Tracing the developmental origin of a lizard skull: Chondrocranial architecture, heterochrony, and variation in lacertids.

PubMed

Yaryhin, Oleksandr; Werneburg, Ingmar

2018-06-08

The sand lizard, Lacerta agilis, is a classical model species in herpetology. Its adult skull anatomy and its embryonic development are well known. The description of its fully formed primordial skull by Ernst Gaupp, in 1900, was a key publication in vertebrate morphology and influenced many comparative embryologists. Based on recent methodological considerations, we restudied the early cranial development of this species starting as early as the formation of mesenchymal condensations up to the fully formed chondrocranium. We traced the formation of the complex chondrocranial architecture in detail, clarified specific homologies for the first time, and uncovered major differences to old textbook descriptions. Comparison with other lacertid lizards revealed a very similar genesis of the primordial skull. However, we detected shifts in the developmental timing of particular cartilaginous elements, mainly in the nasal region, which may correlate to specific ecological adaptation in the adults. Late timing of nasal elements might be an important innovation for the successful wide range distribution of the well-known sand lizard. © 2018 Wiley Periodicals, Inc.

X-ray fluorescence determination of Sn, Sb, Pb in lead-based bearing alloys using a solution technique

NASA Astrophysics Data System (ADS)

Tian, Lunfu; Wang, Lili; Gao, Wei; Weng, Xiaodong; Liu, Jianhui; Zou, Deshuang; Dai, Yichun; Huang, Shuke

2018-03-01

For the quantitative analysis of the principal elements in lead-antimony-tin alloys, directly X-ray fluorescence (XRF) method using solid metal disks introduces considerable errors due to the microstructure inhomogeneity. To solve this problem, an aqueous solution XRF method is proposed for determining major amounts of Sb, Sn, Pb in lead-based bearing alloys. The alloy samples were dissolved by a mixture of nitric acid and tartaric acid to eliminated the effects of microstructure of these alloys on the XRF analysis. Rh Compton scattering was used as internal standard for Sb and Sn, and Bi was added as internal standard for Pb, to correct for matrix effects, instrumental and operational variations. High-purity lead, antimony and tin were used to prepare synthetic standards. Using these standards, calibration curves were constructed for the three elements after optimizing the spectrometer parameters. The method has been successfully applied to the analysis of lead-based bearing alloys and is more rapid than classical titration methods normally used. The determination results are consistent with certified values or those obtained by titrations.

Geochemistry of Woranso-Mille Pliocene basalts from west-central Afar, Ethiopia: Implications for mantle source characteristics and rift evolution

NASA Astrophysics Data System (ADS)

Alene, Mulugeta; Hart, William K.; Saylor, Beverly Z.; Deino, Alan; Mertzman, Stanley; Haile-Selassie, Yohannes; Gibert, Luis B.

2017-06-01

The Woranso-Mille (WORMIL) area in the west-central Afar, Ethiopia, contains several Pliocene basalt flows, tuffs, and fossiliferous volcaniclastic beds. We present whole-rock major- and trace-element data including REE, and Sr-Nd-Pb isotope ratios from these basalts to characterize the geochemistry, constrain petrogenetic processes, and infer mantle sources. Six basalt groups are distinguished stratigraphically and geochemically within the interval from 3.8 to 3 Ma. The elemental and isotopic data show intra- and inter-group variations derived primarily from source heterogeneity and polybaric crystallization ± crustal inputs. The combined Sr-Nd-Pb isotope data indicate the involvement of three main reservoirs: the Afar plume, depleted mantle, and enriched continental lithosphere (mantle ± crust). Trace element patterns and ratios further indicate the basalts were generated from spinel-dominated shallow melting, consistent with significantly thinned Pliocene lithosphere in western Afar. The on-land continuation of the Aden rift into western Afar during the Pliocene is reexamined in the context of the new geochemistry and age constraints of the WORMIL basalts. The new data reinforce previous interpretations that progressive rifting and transformation of the continental lithosphere to oceanic lithosphere allows for increasing asthenospheric inputs through time as the continental lithosphere is thinned. Accepted trace element values for BHVO-2 are those recently recommended by Jochum et al. (2016) rounded to provide the same significant figures as the data. Ternary model after Schilling et al. (1992); Endmembers from Rooney et al. (2012).

Elemental compositions of crab and snail shells from the Kueishantao hydrothermal field in the southwestern Okinawa Trough

NASA Astrophysics Data System (ADS)

Zeng, Zhigang; Ma, Yao; Wang, Xiaoyuan; Chen, Chen-Tung Arthur; Yin, Xuebo; Zhang, Suping; Zhang, Junlong; Jiang, Wei

2018-04-01

To reveal differences in the behavior of benthic vent animals, and the sources and sinks of biogeochemical and fluid circulations, it is necessary to constrain the chemical characteristics of benthic animals from seafloor hydrothermal fields. We measured the abundances of 27 elements in shells of the crab Xenograpsus testudinatus and the snail Anachis sp., collected from the Kueishantao hydrothermal field (KHF) in the southwestern Okinawa Trough, with the aim of improving our understanding of the compositional variations between individual vent organisms, and the sources of the rare earth elements (REEs) in their shells. The Mn, Hg, and K concentrations in the male X. testudinatus shells are found to be higher than those in female crab shells, whereas the reverse is true for the accumulation of B, implying that the accumulation of K, Mn, Hg, and B in the crab shells is influenced by sex. This is inferred to be a result of the asynchronous molting of the male and female crab shells. Snail shells are found to have higher Ca, Al, Fe, Ni, and Co concentrations than crab shells. This may be attributed to different metal accumulation times. The majority of the light rare earth element (LREE) distribution patterns in the crab and snail shells are similar to those of Kueishantao vent fluids, with the crab and snail shells also exhibiting LREE enrichment, implying that the LREEs contained in crab and snail shells in the KHF are derived from vent fluids.

Elemental mercury neurotoxicity and clinical recovery of function: A review of findings, and implications for occupational health.

PubMed

Calabrese, Edward J; Iavicoli, Ivo; Calabrese, Vittorio; Cory-Slechta, Deborah A; Giordano, James

2018-05-01

This paper assessed approximately 30 studies, mostly involving occupationally exposed subjects, concerning the extent to which those who developed elemental mercury (Hg)-induced central and/or peripheral neurotoxicities from chronic or acute exposures recover functionality and/or performance. While some recovery occurred in the vast majority of cases, the extent of such recoveries varied considerably by individual and endpoint. Factors accounting for the extensive inter-individual variation in toxicity and recovery were not specifically assessed such as age, gender, diet, environmental enrichment, chelation strategies and dose-rate. While the data indicate that psychomotor endpoints often show substantial and relatively rapid (i.e., 2-6 months) recovery and that neuropsychological endpoints display slower and less complete recovery, generalizations are difficult due to highly variable study designs, use of different endpoints measured between studies, different Hg exposures based on blood/urine concentrations and Hg dose-rates, the poor capacity for replicating findings due to the unpredictable/episodic nature of harmful exposures to elemental Hg, and the inconsistency of the initiation of studies after induced toxicities and the differing periods of follow up during recovery periods. Finally, there is strikingly limited animal model literature on the topic of recovery/reversibility of elemental Hg toxicity, a factor which significantly contributes to the overall marked uncertainties for predicting the rate and magnitude of recovery and the factors that affect it. Copyright © 2018 Elsevier Inc. All rights reserved.

Temporal and local variations in biochemical composition of Crassostrea gigas shells

NASA Astrophysics Data System (ADS)

Almeida, Maria J.; Machado, Jorge; Moura, Gabriela; Azevedo, Manuela; Coimbra, João

1998-12-01

The objective of this work was to find relations between organic and inorganic shell components. Crassostrea gigas shells were analysed from live specimens collected at five different stations: the Lima estuary (1), the Ria de Aveiro (2, 3), and the Mondego estuary (4, 5), Portugal. About 30% of the oysters, from stations 1, 2 and 3 had shell-thickness-index values ≤10, indicating a severe thickening. Oysters from the Mondego estuary contained mud blisters due to Polydora infestations. Oysters from station 3 had thicker shells and showed a higher Pb content in shell and tissues than oysters from the other stations. Amino-acid composition changed mainly according to the modified protein (jelly-like substance) probably produced by the presence of TBT (tributyltin) in the water; in particular, we observed an increase in glutamic acid and threonine and a decrease in major amino acids such as aspartic acid, serine and glycine. Elemental shell composition was mainly associated with environmental conditions: shells from stations in open areas had higher Li, Cd, Cr and Ca and lower Mn levels than those from semi-enclosed areas (fish farms). Discriminant analyses against the three kinds of shell observed (normal, thick and infested), using chemical elements and amino acids as discriminant variables, showed the infested group to have the biggest differences. There was no correlation between amino-acid and chemical-element patterns in shell composition. Observed changes in amino-acid pattern, probably due to TBT, did not imply a simultaneous change of elemental composition.

Standardized reporting guidelines for emergency department syncope risk-stratification research.

PubMed

Sun, Benjamin C; Thiruganasambandamoorthy, Venkatesh; Cruz, Jeffrey Dela

2012-06-01

There is increasing research interest in the risk stratification of emergency department (ED) syncope patients. A major barrier to comparing and synthesizing existing research is wide variation in the conduct and reporting of studies. The authors wanted to create standardized reporting guidelines for ED syncope risk-stratification research using an expert consensus process. In that pursuit, a panel of syncope researchers was convened and a literature review was performed to identify candidate reporting guideline elements. Candidate elements were grouped into four sections: eligibility criteria, outcomes, electrocardiogram (ECG) findings, and predictors. A two-round, modified Delphi consensus process was conducted using an Internet-based survey application. In the first round, candidate elements were rated on a five-point Likert scale. In the second round, panelists rerated items after receiving information about group ratings from the first round. Items that were rated by >80% of the panelists at the two highest levels of the Likert scale were included in the final guidelines. There were 24 panelists from eight countries who represented five clinical specialties. The panel identified an initial set of 183 candidate elements. After two survey rounds, the final reporting guidelines included 92 items that achieved >80% consensus. These included 10 items for study eligibility, 23 items for outcomes, nine items for ECG abnormalities, and 50 items for candidate predictors. Adherence to these guidelines should facilitate comparison of future research in this area. © 2012 by the Society for Academic Emergency Medicine.

Determination of 61 elements in urine samples collected from a non-occupationally exposed UK adult population.

PubMed

Morton, Jackie; Tan, Emma; Leese, Elizabeth; Cocker, John

2014-12-01

levels for 61 elements were established in urine samples collected from 132 occupationally unexposed UK adults. In this study all elements were determined by inductively coupled plasma-mass spectrometry, but methods were 'tailored' to the elements; in total six analytical methods were undertaken. For the first time in a UK population 95th percentile values are reported for 19 elements for which there is no available comparison. Repeat urine samples were collected from some individuals and mixed effects modelling was carried out on the data to give an estimation of variation both between individuals and within the same individual. The mixed effects modelling was undertaken on 31 of the 61 elements for which there were more than two thirds of data above the LOQ and variations of between and within individuals are reported. The analysis found that creatinine adjustment of analyte concentrations was found to be beneficial for 22 of the 31 elements and that smokers were found to exhibit significantly higher cadmium but lower boron than non-smokers. For most elements, the data compare well with other published data but higher concentrations were observed in this study for urinary lead, chromium, vanadium and tungsten. Copyright © 2014 The Authors. Published by Elsevier Ireland Ltd.. All rights reserved.

High time-resolved elemental components in fine and coarse particles in the Pearl River Delta region of Southern China: Dynamic variations and effects of meteorology.

PubMed

Zhou, Shengzhen; Davy, Perry K; Wang, Xuemei; Cohen, Jason Blake; Liang, Jiaquan; Huang, Minjuan; Fan, Qi; Chen, Weihua; Chang, Ming; Ancelet, Travis; Trompetter, William J

2016-12-01

Hourly-resolved PM 2.5 and PM 10-2.5 samples were collected in the industrial city Foshan in the Pearl River Delta region, China. The samples were subsequently analyzed for elemental components and black carbon (BC). A key purpose of the study was to understand the composition of particulate matter (PM) at high-time resolution in a polluted urban atmosphere to identify key components contributing to extreme PM concentration events and examine the diurnal chemical concentration patterns for air quality management purposes. It was found that BC and S concentrations dominated in the fine mode, while elements with mostly crustal and oceanic origins such as Si, Ca, Al and Cl were found in the coarse size fraction. Most of the elements showed strong diurnal variations. S did not show clear diurnal variations, suggesting regional rather than local origin. Based on empirical orthogonal functions (EOF) method, 3 forcing factors were identified contributing to the extreme events of PM 2.5 and selected elements, i.e., urban direct emissions, wet deposition and a combination of coarse mode sources. Conditional probability functions (CPF) were performed using wind profiles and elemental concentrations. The CPF results showed that BC and elemental Cl, K, Fe, Cu and Zn in the fine mode were mostly from the northwest, indicating that industrial emissions and combustion were the main sources. For elements in the coarse mode, Si, Al, K, Ca, Fe and Ti showed similar patterns, suggesting same sources such as local soil dust/construction activities. Coarse elemental Cl was mostly from the south and southeast, implying the influence of marine aerosol sources. For other trace elements, we found vanadium (V) in fine PM was mainly from the sources located to the southeast of the measuring site. Combined with CPF results of S and V in fine PM, we concluded shipping emissions were likely an important elemental emission source. Copyright © 2016. Published by Elsevier B.V.

Optimizing finite element predictions of local subchondral bone structural stiffness using neural network-derived density-modulus relationships for proximal tibial subchondral cortical and trabecular bone.

PubMed

Nazemi, S Majid; Amini, Morteza; Kontulainen, Saija A; Milner, Jaques S; Holdsworth, David W; Masri, Bassam A; Wilson, David R; Johnston, James D

2017-01-01

Quantitative computed tomography based subject-specific finite element modeling has potential to clarify the role of subchondral bone alterations in knee osteoarthritis initiation, progression, and pain. However, it is unclear what density-modulus equation(s) should be applied with subchondral cortical and subchondral trabecular bone when constructing finite element models of the tibia. Using a novel approach applying neural networks, optimization, and back-calculation against in situ experimental testing results, the objective of this study was to identify subchondral-specific equations that optimized finite element predictions of local structural stiffness at the proximal tibial subchondral surface. Thirteen proximal tibial compartments were imaged via quantitative computed tomography. Imaged bone mineral density was converted to elastic moduli using multiple density-modulus equations (93 total variations) then mapped to corresponding finite element models. For each variation, root mean squared error was calculated between finite element prediction and in situ measured stiffness at 47 indentation sites. Resulting errors were used to train an artificial neural network, which provided an unlimited number of model variations, with corresponding error, for predicting stiffness at the subchondral bone surface. Nelder-Mead optimization was used to identify optimum density-modulus equations for predicting stiffness. Finite element modeling predicted 81% of experimental stiffness variance (with 10.5% error) using optimized equations for subchondral cortical and trabecular bone differentiated with a 0.5g/cm 3 density. In comparison with published density-modulus relationships, optimized equations offered improved predictions of local subchondral structural stiffness. Further research is needed with anisotropy inclusion, a smaller voxel size and de-blurring algorithms to improve predictions. Copyright © 2016 Elsevier Ltd. All rights reserved.

A 13000-year, high-resolution multi-proxy record of climate variability with episodes of enhanced atmospheric dust in Western Asia: Evidence from Neor peat complex in NW Iran

NASA Astrophysics Data System (ADS)

Sharifi, O.; Pourmand, A.; Canuel, E. A.; Peterson, L. C.

2011-12-01

The regional climate over West Asia, extending between Iran and the Arabian Peninsula to the eastern Mediterranean Sea, is governed by interactions between three major synoptic systems; mid-latitude Westerlies, the Siberian Anticyclone and the Indian Ocean Summer Monsoon. In recent years, a number of paleoclimate studies have drawn potential links between episodes of abrupt climate change during the Holocene, and the rise and fall of human civilizations across the "Fertile Crescent" of West Asia. High-resolution archives of climate variability from this region, however, are scarce, and at times contradicting. For example, while pollen and planktonic data from lakes in Turkey and Iran suggest that dry, continental conditions prevailed during the early-middle Holocene, oxygen isotope records indicate that relatively wet conditions dominated during this interval over West Asia. We present interannual to decadal multi-proxy records of climate variability from a peat complex in NW Iran to reconstruct changes in moisture and atmospheric dust content during the last 13000 years. Radiocarbon dating on 20 samples from a 775-cm peat core show a nearly constant rate of accumulation (1.7 mm yr-1, R2=0.99) since 13356 ± 116 cal yr B.P. Down-core X-ray fluorescence measurements of conservative lithogenic elements (e.g., Al, Zr, Ti) as well as redox-sensitive elements (e.g., Fe, K, Rb, Zn, Cu, and Co) at 2 mm intervals reveal several periods of elevated dust input to this region since the early Holocene. Down-core variations of total organic carbon and total nitrogen co-vary closely and are inversely correlated with conservative lithogenic elements (Al, Si, Ti), indicating a potential link between climate change and accumulation of organic carbon in the Neor peat mire. Major episodes of enhanced dust deposition (13000-12000, 11700-11200, 9200-8800, 7000-6000, 4200-3200, 2800-2200 and 1500-600 cal yr B.P) are in good agreement with other proxy records that document more arid climate in Asia and eastern Mediterranean Sea during these intervals. The relationship between periods of elevated dust input and the response of civilizations in the region, such as the Akkadian and Persian Empires, can also be inferred from variation of conservative lithogenic elements since 4200 cal yr B.P. Intensive dust deposition during 4200-3200 cal yr BP, for example, coincides with similar dry conditions documented by oxygen isotope and geochemical data from Lake Van and Tecer of Turkey, the geochemical data from the Gulf of Oman and oxygen isotope records from Soreq Cave in Israel. Several significant periodicities (e.g. 750, 900, 1550 and 3000 yr) observed from wavelet analysis of refractory elements correspond with the timing of internal climate feedbacks and/or solar variability as potential modulating mechanisms for abrupt climate change in West Asia during the Holocene.