The IUGS/IAGC Task Group on Global Geochemical Baselines

USGS Publications Warehouse

Smith, David B.; Wang, Xueqiu; Reeder, Shaun; Demetriades, Alecos

2012-01-01

The Task Group on Global Geochemical Baselines, operating under the auspices of both the International Union of Geological Sciences (IUGS) and the International Association of Geochemistry (IAGC), has the long-term goal of establishing a global geochemical database to document the concentration and distribution of chemical elements in the Earth’s surface or near-surface environment. The database and accompanying element distribution maps represent a geochemical baseline against which future human-induced or natural changes to the chemistry of the land surface may be recognized and quantified. In order to accomplish this long-term goal, the activities of the Task Group include: (1) developing partnerships with countries conducting broad-scale geochemical mapping studies; (2) providing consultation and training in the form of workshops and short courses; (3) organizing periodic international symposia to foster communication among the geochemical mapping community; (4) developing criteria for certifying those projects whose data are acceptable in a global geochemical database; (5) acting as a repository for data collected by those projects meeting the criteria for standardization; (6) preparing complete metadata for the certified projects; and (7) preparing, ultimately, a global geochemical database. This paper summarizes the history and accomplishments of the Task Group since its first predecessor project was established in 1988.

Geologic map of outcrop areas of sedimentary units in the eastern part of the Hailey 1 degree x 2 degrees quadrangle and part of the southern part of the Challis 1 degree x 2 degrees quadrangle, south-central Idaho

USGS Publications Warehouse

Link, P.K.; Mahoney, J.B.; Bruner, D.J.; Batatian, L.D.; Wilson, Eric; Williams, F.J.C.

1995-01-01

The paper version of the Geologic map of outcrop areas of sedimentary units in the eastern part of the Hailey 1x2 Quadrangle and part of the southern part of the Challis 1x2 Quadrangle, south-central Idaho was compiled by Paul Link and others in 1995. The plate was compiled on a 1:100,000 scale topographic base map. TechniGraphic System, Inc. of Fort Collins Colorado digitized this map under contract for N.Shock. G.Green edited and prepared the digital version for publication as a GIS database. The digital geologic map database can be queried in many ways to produce a variety of geologic maps.

Relational Database for the Geology of the Northern Rocky Mountains - Idaho, Montana, and Washington

USGS Publications Warehouse

Causey, J. Douglas; Zientek, Michael L.; Bookstrom, Arthur A.; Frost, Thomas P.; Evans, Karl V.; Wilson, Anna B.; Van Gosen, Bradley S.; Boleneus, David E.; Pitts, Rebecca A.

2008-01-01

A relational database was created to prepare and organize geologic map-unit and lithologic descriptions for input into a spatial database for the geology of the northern Rocky Mountains, a compilation of forty-three geologic maps for parts of Idaho, Montana, and Washington in U.S. Geological Survey Open File Report 2005-1235. Not all of the information was transferred to and incorporated in the spatial database due to physical file limitations. This report releases that part of the relational database that was completed for that earlier product. In addition to descriptive geologic information for the northern Rocky Mountains region, the relational database contains a substantial bibliography of geologic literature for the area. The relational database nrgeo.mdb (linked below) is available in Microsoft Access version 2000, a proprietary database program. The relational database contains data tables and other tables used to define terms, relationships between the data tables, and hierarchical relationships in the data; forms used to enter data; and queries used to extract data.

Map and digital database of sedimentary basins and indications of petroleum in the Central Alaska Province

USGS Publications Warehouse

Troutman, Sandra M.; Stanley, Richard G.

2003-01-01

This database and accompanying text depict historical and modern reported occurrences of petroleum both in wells and at the surface within the boundaries of the Central Alaska Province. These data were compiled from previously published and unpublished sources and were prepared for use in the 2002 U.S. Geological Survey petroleum assessment of Central Alaska, Yukon Flats region. Indications of petroleum are described as oil or gas shows in wells, oil or gas seeps, or outcrops of oil shale or oil-bearing rock and include confirmed and unconfirmed reports. The scale of the source map limits the spatial resolution (scale) of the database to 1:2,500,000 or smaller.

Digital data for preliminary geologic map of the Mount Hood 30- by 60-minute quadrangle, northern Cascade Range, Oregon

USGS Publications Warehouse

Lina Ma,; Sherrod, David R.; Scott, William E.

2014-01-01

This geodatabase contains information derived from legacy mapping that was published in 1995 as U.S. Geological Survey Open-File Report 95-219. The main component of this publication is a geologic map database prepared using geographic information system (GIS) applications. Included are pdf files to view or print the map sheet, the accompanying pamphlet from Open-File Report 95-219, and links to the original publication, which is available as scanned files in pdf format.

Map design and production issues for the Utah Gap Analysis Project

USGS Publications Warehouse

Hutchinson, John A.; Wittmann, J.H.

1997-01-01

The cartographic preparation and printing of four maps for the Utah GAP Project presented a wide range of challenges in cartographic design and production. In meeting these challenges, the map designers had to balance the purpose of the maps together with their legibility and utility against both the researchers' desire to show as much detail as possible and the technical limitations inherent in the printing process. This article describes seven design and production issues in order to illustrate the challenges of making maps from a merger of satellite data and GIS databases, and to point toward future investigation and development.

Regional Geologic Map of San Andreas and Related Faults in Carrizo Plain, Temblor, Caliente and La Panza Ranges and Vicinity, California; A Digital Database

USGS Publications Warehouse

Dibblee, T. W.; Digital database compiled by Graham, S. E.; Mahony, T.M.; Blissenbach, J.L.; Mariant, J.J.; Wentworth, C.M.

1999-01-01

This Open-File Report is a digital geologic map database. The report serves to introduce and describe the digital data. There is no paper map included in the Open-File Report. The report includes PostScript and PDF plot files that can be used to plot images of the geologic map sheet and explanation sheet. This digital map database is prepared from a previously published map by Dibblee (1973). The geologic map database delineates map units that are identified by general age, lithology, and clast size following the stratigraphic nomenclature of the U.S. Geological Survey. For descriptions of the units, their stratigraphic relations, and sources of geologic mapping, consult the explanation sheet (of99-14_4b.ps or of99-14_4d.pdf), or the original published paper map (Dibblee, 1973). The scale of the source map limits the spatial resolution (scale) of the database to 1:125,000 or smaller. For those interested in the geology of Carrizo Plain and vicinity who do not use an ARC/INFO compatible Geographic Information System (GIS), but would like to obtain a paper map and explanation, PDF and PostScript plot files containing map images of the data in the digital database, as well as PostScript and PDF plot files of the explanation sheet and explanatory text, have been included in the database package (please see the section 'Digital Plot Files', page 5). The PostScript plot files require a gzip utility to access them. For those without computer capability, we can provide users with the PostScript or PDF files on tape that can be taken to a vendor for plotting. Paper plots can also be ordered directly from the USGS (please see the section 'Obtaining Plots from USGS Open-File Services', page 5). The content and character of the database, methods of obtaining it, and processes of extracting the map database from the tar (tape archive) file are described herein. The map database itself, consisting of six ARC/INFO coverages, can be obtained over the Internet or by magnetic tape copy as described below. The database was compiled using ARC/INFO, a commercial Geographic Information System (Environmental Systems Research Institute, Redlands, California), with version 3.0 of the menu interface ALACARTE (Fitzgibbon and Wentworth, 1991, Fitzgibbon, 1991, Wentworth and Fitzgibbon, 1991). The ARC/INFO coverages are stored in uncompressed ARC export format (ARC/INFO version 7.x). All data files have been compressed, and may be uncompressed with gzip, which is available free of charge over the Internet via links from the USGS Public Domain Software page (http://edcwww.cr.usgs.gov/doc/edchome/ndcdb/public.html). ARC/INFO export files (files with the .e00 extension) can be converted into ARC/INFO coverages in ARC/INFO (see below) and can be read by some other Geographic Information Systems, such as MapInfo via ArcLink and ESRI's ArcView.

Preliminary integrated geologic map databases for the United States : Central states : Montana, Wyoming, Colorado, New Mexico, Kansas, Oklahoma, Texas, Missouri, Arkansas, and Louisiana

USGS Publications Warehouse

Stoeser, Douglas B.; Green, Gregory N.; Morath, Laurie C.; Heran, William D.; Wilson, Anna B.; Moore, David W.; Van Gosen, Bradley S.

2005-01-01

The growth in the use of Geographic Information Systems (GIS) has highlighted the need for regional and national digital geologic maps attributed with age and lithology information. Such maps can be conveniently used to generate derivative maps for purposes including mineral-resource assessment, metallogenic studies, tectonic studies, and environmental research. This Open-File Report is a preliminary version of part of a series of integrated state geologic map databases that cover the entire United States. The only national-scale digital geologic maps that portray most or all of the United States for the conterminous U.S. are the digital version of the King and Beikman (1974a, b) map at a scale of 1:2,500,000, as digitized by Schruben and others (1994) and the digital version of the Geologic Map of North America (Reed and others, 2005a, b) compiled at a scale of 1:5,000,000 which is currently being prepared by the U.S. Geological Survey. The present series of maps is intended to provide the next step in increased detail. State geologic maps that range in scale from 1:100,000 to 1:1,000,000 are available for most of the country, and digital versions of these state maps are the basis of this product. In a few cases, new digital compilations were prepared (e.g. OH, SC, SD) or existing paper maps were digitized (e.g. KY, TX). For Alaska and Hawaii, new regional maps are being compiled and ultimately new state maps will be produced. The digital geologic maps are presented in standardized formats as ARC/INFO (.e00) export files and as ArcView shape (.shp) files. Accompanying these spatial databases are a set of five supplemental data tables that relate the map units to detailed lithologic and age information. The maps for the CONUS have been fitted to a common set of state boundaries based on the 1:100,000 topographic map series of the United States Geological Survey (USGS). When the individual state maps are merged, the combined attribute tables can be used directly with the merged maps to make derivative maps. No attempt has been made to reconcile differences in mapped geology across state lines. This is the first version of this product and it will be subsequently updated to include four additional states (North Dakota, South Dakota, Nebraska, and Iowa)

GLOBE and the Earth SySTEM Model in Teacher Preparation

NASA Astrophysics Data System (ADS)

Jabot, M.; Moore, J.; Dorofy, P.

2017-12-01

This presentation will share the growing body of work linking ArcMap and GLOBE and the Earth SySTEM approach in the development of preservice teachers. Our work is linking the power of ArcMap with the vast database of GLOBE in a unique way that links the power of geospatial technologies in shaping the planning for and delivery of science instruction in the P-5 classroom.

Geologic map and digital database of the Cougar Buttes 7.5' quadrangle, San Bernardino County, California

USGS Publications Warehouse

Powell, R.E.; Matti, J.C.; Cossette, P.M.

2000-01-01

The Southern California Areal Mapping Project (SCAMP) of Geologic Division has undertaken regional geologic mapping investigations in the Lucerne Valley area co-sponsored by the Mojave Water Agency and the San Bernardino National Forest. These investigations span the Lucerne Valley basin from the San Bernardino Mountains front northward to the basin axis on the Mojave Desert floor, and from the Rabbit Lake basin east to the Old Woman Springs area. Quadrangles mapped include the Cougar Buttes 7.5' quadrangle, the Lucerne Valley 7.5' quadrangle (Matti and others, in preparation b), the Fawnskin 7.5' quadrangle (Miller and others, 1998), and the Big Bear City 7.5' quadrangle (Matti and others, in preparation a). The Cougar Buttes quadrangle has been mapped previously at scales of 1:62,500 (Dibblee, 1964) and 1:24,000 (Shreve, 1958, 1968; Sadler, 1982a). In line with the goals of the National Cooperative Geologic Mapping Program (NCGMP), our mapping of the Cougar Buttes quadrangle has been directed toward generating a multipurpose digital geologic map database. Guided by the mapping of previous investigators, we have focused on improving our understanding and representation of late Pliocene and Quaternary deposits. In cooperation with the Water Resources Division of the U.S. Geological Survey, we have used our mapping in the Cougar Buttes and Lucerne Valley quadrangles together with well log data to construct cross-sections of the Lucerne Valley basin (R.E. Powell, unpublished data, 1996-1998) and to develop a hydrogeologic framework for the basin. Currently, our mapping in these two quadrangles also is being used as a base for studying soils on various Quaternary landscape surfaces on the San Bernardino piedmont (Eppes and others, 1998). In the Cougar Buttes quadrangle, we have endeavored to represent the surficial geology in a way that provides a base suitable for ecosystem assessment, an effort that has entailed differentiating surficial veneers on piedmont and pediment surfaces and distinguishing the various substrates found beneath these veneers.

A World Wide Web (WWW) server database engine for an organelle database, MitoDat.

PubMed

Lemkin, P F; Chipperfield, M; Merril, C; Zullo, S

1996-03-01

We describe a simple database search engine "dbEngine" which may be used to quickly create a searchable database on a World Wide Web (WWW) server. Data may be prepared from spreadsheet programs (such as Excel, etc.) or from tables exported from relationship database systems. This Common Gateway Interface (CGI-BIN) program is used with a WWW server such as available commercially, or from National Center for Supercomputer Algorithms (NCSA) or CERN. Its capabilities include: (i) searching records by combinations of terms connected with ANDs or ORs; (ii) returning search results as hypertext links to other WWW database servers; (iii) mapping lists of literature reference identifiers to the full references; (iv) creating bidirectional hypertext links between pictures and the database. DbEngine has been used to support the MitoDat database (Mendelian and non-Mendelian inheritance associated with the Mitochondrion) on the WWW.

Application of an adaptive neuro-fuzzy inference system to ground subsidence hazard mapping

NASA Astrophysics Data System (ADS)

Park, Inhye; Choi, Jaewon; Jin Lee, Moung; Lee, Saro

2012-11-01

We constructed hazard maps of ground subsidence around abandoned underground coal mines (AUCMs) in Samcheok City, Korea, using an adaptive neuro-fuzzy inference system (ANFIS) and a geographical information system (GIS). To evaluate the factors related to ground subsidence, a spatial database was constructed from topographic, geologic, mine tunnel, land use, and ground subsidence maps. An attribute database was also constructed from field investigations and reports on existing ground subsidence areas at the study site. Five major factors causing ground subsidence were extracted: (1) depth of drift; (2) distance from drift; (3) slope gradient; (4) geology; and (5) land use. The adaptive ANFIS model with different types of membership functions (MFs) was then applied for ground subsidence hazard mapping in the study area. Two ground subsidence hazard maps were prepared using the different MFs. Finally, the resulting ground subsidence hazard maps were validated using the ground subsidence test data which were not used for training the ANFIS. The validation results showed 95.12% accuracy using the generalized bell-shaped MF model and 94.94% accuracy using the Sigmoidal2 MF model. These accuracy results show that an ANFIS can be an effective tool in ground subsidence hazard mapping. Analysis of ground subsidence with the ANFIS model suggests that quantitative analysis of ground subsidence near AUCMs is possible.

Map and Data for Quaternary Faults and Fault Systems on the Island of Hawai`i

USGS Publications Warehouse

Cannon, Eric C.; Burgmann, Roland; Crone, Anthony J.; Machette, Michael N.; Dart, Richard L.

2007-01-01

Introduction This report and digitally prepared, GIS-based map is one of a series of similar products covering individual states or regions of United States that show the locations, ages, and activity rates of major earthquake-related features such as faults and fault-related folds. It is part of a continuing the effort to compile a comprehensive Quaternary fault and fold map and database for the United States, which is supported by the U.S. Geological Survey's (USGS) Earthquake Hazards Program. Guidelines for the compilation of the Quaternary fault and fold maps for the United States were published by Haller and others (1993) at the onset of this project. This compilation of Quaternary surface faulting and folding in Hawai`i is one of several similar state and regional compilations that were planned for the United States. Reports published to date include West Texas (Collins and others, 1996), New Mexico (Machette and others, 1998), Arizona (Pearthree, 1998), Colorado (Widmann and others, 1998), Montana (Stickney and others, 2000), Idaho (Haller and others, 2005), and Washington (Lidke and others, 2003). Reports for other states such as California and Alaska are still in preparation. The primary intention of this compilation is to aid in seismic-hazard evaluations. The report contains detailed information on the location and style of faulting, the time of most recent movement, and assigns each feature to a slip-rate category (as a proxy for fault activity). It also contains the name and affiliation of the compiler, date of compilation, geographic and other paleoseismologic parameters, as well as an extensive set of references for each feature. The map (plate 1) shows faults, volcanic rift zones, and lineaments that show evidence of Quaternary surface movement related to faulting, including data on the time of most recent movement, sense of movement, slip rate, and continuity of surface expression. This compilation is presented as a digitally prepared map product and catalog of data, both in Adobe Acrobat PDF format. The senior authors (Eric C. Cannon and Roland Burgmann) compiled the fault data as part of ongoing studies of active faulting on the Island of Hawai`i. The USGS is responsible for organizing and integrating the State or regional products under their National Seismic Hazard Mapping project, including the coordination and oversight of contributions from individuals and groups (Michael N. Machette and Anthony J. Crone), database design and management (Kathleen M. Haller), and digitization and analysis of map data (Richard L. Dart). After being released an Open-File Report, the data in this report will be available online at http://earthquake.usgs.gov/regional/qfaults/, the USGS Quaternary Fault and Fold Database of the United States.

Database for the Geologic Map of Upper Eocene to Holocene Volcanic and Related Rocks of the Cascade Range, Oregon

USGS Publications Warehouse

Nimz, Kathryn; Ramsey, David W.; Sherrod, David R.; Smith, James G.

2008-01-01

Since 1979, Earth scientists of the Geothermal Research Program of the U.S. Geological Survey have carried out multidisciplinary research in the Cascade Range. The goal of this research is to understand the geology, tectonics, and hydrology of the Cascades in order to characterize and quantify geothermal resource potential. A major goal of the program is compilation of a comprehensive geologic map of the entire Cascade Range that incorporates modern field studies and that has a unified and internally consistent explanation. This map is one of three in a series that shows Cascade Range geology by fitting published and unpublished mapping into a province-wide scheme of rock units distinguished by composition and age; map sheets of the Cascade Range in Washington (Smith, 1993) and California will complete the series. The complete series forms a guide to exploration and evaluation of the geothermal resources of the Cascade Range and will be useful for studies of volcano hazards, volcanology, and tectonics. This digital release contains all the information used to produce the geologic map published as U.S. Geological Survey Geologic Investigations Series I-2569 (Sherrod and Smith, 2000). The main component of this digital release is a geologic map database prepared using ArcInfo GIS. This release also contains files to view or print the geologic map and accompanying descriptive pamphlet from I-2569.

Evaluation of MEDALUS model for desertification hazard zonation using GIS; study area: Iyzad Khast plain, Iran.

PubMed

Farajzadeh, Manuchehr; Egbal, Mahbobeh Nik

2007-08-15

In this study, the MEDALUS model along with GIS mapping techniques are used to determine desertification hazards for a province of Iran to determine the desertification hazard. After creating a desertification database including 20 parameters, the first steps consisted of developing maps of four indices for the MEDALUS model including climate, soil, vegetation and land use were prepared. Since these parameters have mostly been presented for the Mediterranean region in the past, the next step included the addition of other indicators such as ground water and wind erosion. Then all of the layers weighted by environmental conditions present in the area were used (following the same MEDALUS framework) before a desertification map was prepared. The comparison of two maps based on the original and modified MEDALUS models indicates that the addition of more regionally-specific parameters into the model allows for a more accurate representation of desertification processes across the Iyzad Khast plain. The major factors affecting desertification in the area are climate, wind erosion and low land quality management, vegetation degradation and the salinization of soil and water resources.

Remote science support during MARS2013: testing a map-based system of data processing and utilization for future long-duration planetary missions.

PubMed

Losiak, Anna; Gołębiowska, Izabela; Orgel, Csilla; Moser, Linda; MacArthur, Jane; Boyd, Andrea; Hettrich, Sebastian; Jones, Natalie; Groemer, Gernot

2014-05-01

MARS2013 was an integrated Mars analog field simulation in eastern Morocco performed by the Austrian Space Forum between February 1 and 28, 2013. The purpose of this paper is to discuss the system of data processing and utilization adopted by the Remote Science Support (RSS) team during this mission. The RSS team procedures were designed to optimize operational efficiency of the Flightplan, field crew, and RSS teams during a long-term analog mission with an introduced 10 min time delay in communication between "Mars" and Earth. The RSS workflow was centered on a single-file, easy-to-use, spatially referenced database that included all the basic information about the conditions at the site of study, as well as all previous and planned activities. This database was prepared in Google Earth software. The lessons learned from MARS2013 RSS team operations are as follows: (1) using a spatially referenced database is an efficient way of data processing and data utilization in a long-term analog mission with a large amount of data to be handled, (2) mission planning based on iterations can be efficiently supported by preparing suitability maps, (3) the process of designing cartographical products should start early in the planning stages of a mission and involve representatives of all teams, (4) all team members should be trained in usage of cartographical products, (5) technical problems (e.g., usage of a geological map while wearing a space suit) should be taken into account when planning a work flow for geological exploration, (6) a system that helps the astronauts to efficiently orient themselves in the field should be designed as part of future analog studies.

The role of digital cartographic data in the geosciences

USGS Publications Warehouse

Guptill, S.C.

1983-01-01

The increasing demand of the Nation's natural resource developers for the manipulation, analysis, and display of large quantities of earth-science data has necessitated the use of computers and the building of geoscience information systems. These systems require, in digital form, the spatial data on map products. The basic cartographic data shown on quadrangle maps provide a foundation for the addition of geological and geophysical data. If geoscience information systems are to realize their full potential, large amounts of digital cartographic base data must be available. A major goal of the U.S. Geological Survey is to create, maintain, manage, and distribute a national cartographic and geographic digital database. This unified database will contain numerous categories (hydrography, hypsography, land use, etc.) that, through the use of standardized data-element definitions and formats, can be used easily and flexibly to prepare cartographic products and perform geoscience analysis. ?? 1983.

Digital Geological Map for Marie Byrd Land, West Antarctica: A resource for investigation of geotectonic frameworks and future glaciological change

NASA Astrophysics Data System (ADS)

Siddoway, C. S.; White, T.; Elkind, S.; Cox, S. C.; Lyttle, B. S.; Morin, P. J.

2016-12-01

Bedrock exposures are relatively sparse in Marie Byrd Land (MBL), where rock is concealed by the West Antarctic ice sheet, but they provide direct insight into the geological evolution and glacial history of West Antarctica. MBL is tectonically active, as evidenced by Late Pleistocene to Holocene volcanism and 2012 seismicity (3 events, M4.4 to M5.5) at sites beside Ross Sea. There are geological influences upon the ice sheet, namely, subglacial volcanism and associated geothermal flux, fault zone alteration/mineralization, and bedrock roughess. The former may influence the position and velocity of outlet glaciers and the latter may anchor or accelerate sectors of the ice sheet. To make MBL's geological framework accessible to investigators with diverse research priorities, we are preparing the first digital geological map of MBL by compiling ground-based geological data, incorporating firsthand observations, published geological maps and literature. The map covers an on-continent coastal area of 900 000 km2 between 090°E to 160°E, from 72°S to 80°S, at 1:250 000 scale or better. Exposed rock is delimited by 1976 polygons, occupying 410 km2. Supraglacial features and glacial till, seasonal water and blue ice, are also mapped, as a baseline for past and future glaciological change. Rendered in the ArcMap GIS software by Esri©, the database employs international GeoSciML data protocols for feature classification and description of rock and moraine polygons from the Antarctic Digital Database (www.add.scar.org), with shape and location adjusted to align with features in Landsat Image Mosaic of Antarctica imagery (lima.usgs.gov), where necessary. The GIS database is attribute-rich and queriable; including links to bibliographic source files for primary literature and published maps. It will soon be available as GoogleEarth kmz files and an ArcGIS online map service. An initial application is to the interpretation of sub-ice geology for a subglacial geotectonic map of this active region. This is undertaken as part of ROSETTA-Ice, an integrated systems science investigation of the Ross Ice Shelf that commenced in 2015. The next phases of MBL database development will assess icesheet-ocean interactions near grounding line, environmental domain analysis and ecological research.

The Design and Product of National 1:1000000 Cartographic Data of Topographic Map

NASA Astrophysics Data System (ADS)

Wang, Guizhi

2016-06-01

National administration of surveying, mapping and geoinformation started to launch the project of national fundamental geographic information database dynamic update in 2012. Among them, the 1:50000 database was updated once a year, furthermore the 1:250000 database was downsized and linkage-updated on the basis. In 2014, using the latest achievements of 1:250000 database, comprehensively update the 1:1000000 digital line graph database. At the same time, generate cartographic data of topographic map and digital elevation model data. This article mainly introduce national 1:1000000 cartographic data of topographic map, include feature content, database structure, Database-driven Mapping technology, workflow and so on.

LDSplitDB: a database for studies of meiotic recombination hotspots in MHC using human genomic data.

PubMed

Guo, Jing; Chen, Hao; Yang, Peng; Lee, Yew Ti; Wu, Min; Przytycka, Teresa M; Kwoh, Chee Keong; Zheng, Jie

2018-04-20

Meiotic recombination happens during the process of meiosis when chromosomes inherited from two parents exchange genetic materials to generate chromosomes in the gamete cells. The recombination events tend to occur in narrow genomic regions called recombination hotspots. Its dysregulation could lead to serious human diseases such as birth defects. Although the regulatory mechanism of recombination events is still unclear, DNA sequence polymorphisms have been found to play crucial roles in the regulation of recombination hotspots. To facilitate the studies of the underlying mechanism, we developed a database named LDSplitDB which provides an integrative and interactive data mining and visualization platform for the genome-wide association studies of recombination hotspots. It contains the pre-computed association maps of the major histocompatibility complex (MHC) region in the 1000 Genomes Project and the HapMap Phase III datasets, and a genome-scale study of the European population from the HapMap Phase II dataset. Besides the recombination profiles, related data of genes, SNPs and different types of epigenetic modifications, which could be associated with meiotic recombination, are provided for comprehensive analysis. To meet the computational requirement of the rapidly increasing population genomics data, we prepared a lookup table of 400 haplotypes for recombination rate estimation using the well-known LDhat algorithm which includes all possible two-locus haplotype configurations. To the best of our knowledge, LDSplitDB is the first large-scale database for the association analysis of human recombination hotspots with DNA sequence polymorphisms. It provides valuable resources for the discovery of the mechanism of meiotic recombination hotspots. The information about MHC in this database could help understand the roles of recombination in human immune system. DATABASE URL: http://histone.scse.ntu.edu.sg/LDSplitDB.

Database for the geologic map of the Bend 30- x 60-minute quadrangle, central Oregon

USGS Publications Warehouse

Koch, Richard D.; Ramsey, David W.; Sherrod, David R.; Taylor, Edward M.; Ferns, Mark L.; Scott, William E.; Conrey, Richard M.; Smith, Gary A.

2010-01-01

The Bend 30- x 60-minute quadrangle has been the locus of volcanism, faulting, and sedimentation for the past 35 million years. It encompasses parts of the Cascade Range and Blue Mountain geomorphic provinces, stretching from snowclad Quaternary stratovolcanoes on the west to bare rocky hills and sparsely forested juniper plains on the east. The Deschutes River and its large tributaries, the Metolius and Crooked Rivers, drain the area. Topographic relief ranges from 3,157 m (10,358 ft) at the top of South Sister to 590 m (1,940 ft) at the floor of the Deschutes and Crooked Rivers where they exit the area at the north-central edge of the map area. The map encompasses a part of rapidly growing Deschutes County. The city of Bend, which has over 70,000 people living in its urban growth boundary, lies at the south-central edge of the map. Redmond, Sisters, and a few smaller villages lie scattered along the major transportation routes of U.S. Highways 97 and 20. This geologic map depicts the geologic setting as a basis for structural and stratigraphic analysis of the Deschutes basin, a major hydrologic discharge area on the east flank of the Cascade Range. The map also provides a framework for studying potentially active faults of the Sisters fault zone, which trends northwest across the map area from Bend to beyond Sisters. This digital release contains all of the information used to produce the geologic map published as U.S. Geological Survey Geologic Investigations Series I-2683 (Sherrod and others, 2004). The main component of this digital release is a geologic map database prepared using ArcInfo GIS. This release also contains files to view or print the geologic map and accompanying descriptive pamphlet from I-2683.

Translation from the collaborative OSM database to cartography

NASA Astrophysics Data System (ADS)

Hayat, Flora

2018-05-01

The OpenStreetMap (OSM) database includes original items very useful for geographical analysis and for creating thematic maps. Contributors record in the open database various themes regarding amenities, leisure, transports, buildings and boundaries. The Michelin mapping department develops map prototypes to test the feasibility of mapping based on OSM. To translate the OSM database structure into a database structure fitted with Michelin graphic guidelines a research project is in development. It aims at defining the right structure for the Michelin uses. The research project relies on the analysis of semantic and geometric heterogeneities in OSM data. In that order, Michelin implements methods to transform the input geographical database into a cartographic image dedicated for specific uses (routing and tourist maps). The paper focuses on the mapping tools available to produce a personalised spatial database. Based on processed data, paper and Web maps can be displayed. Two prototypes are described in this article: a vector tile web map and a mapping method to produce paper maps on a regional scale. The vector tile mapping method offers an easy navigation within the map and within graphic and thematic guide- lines. Paper maps can be partly automatically drawn. The drawing automation and data management are part of the mapping creation as well as the final hand-drawing phase. Both prototypes have been set up using the OSM technical ecosystem.

Database for the Quaternary and Pliocene Yellowstone Plateau volcanic field of Wyoming, Idaho, and Montana (Database for Professional Paper 729-G)

USGS Publications Warehouse

Koch, Richard D.; Ramsey, David W.; Christiansen, Robert L.

2011-01-01

The superlative hot springs, geysers, and fumarole fields of Yellowstone National Park are vivid reminders of a recent volcanic past. Volcanism on an immense scale largely shaped the unique landscape of central and western Yellowstone Park, and intimately related tectonism and seismicity continue even now. Furthermore, the volcanism that gave rise to Yellowstone's hydrothermal displays was only part of a long history of late Cenozoic eruptions in southern and eastern Idaho, northwestern Wyoming, and southwestern Montana. The late Cenozoic volcanism of Yellowstone National Park, although long believed to have occurred in late Tertiary time, is now known to have been of latest Pliocene and Pleistocene age. The eruptions formed a complex plateau of voluminous rhyolitic ash-flow tuffs and lavas, but basaltic lavas too have erupted intermittently around the margins of the rhyolite plateau. Volcanism almost certainly will recur in the Yellowstone National Park region. This digital release contains all the information used to produce the geologic maps published as plates in U.S. Geological Survey Professional Paper 729-G (Christiansen, 2001). The main component of this digital release is a geologic map database prepared using geographic information systems (GIS) applications. This release also contains files to view or print the geologic maps and main report text from Professional Paper 729-G.

77 FR 47492 - Thirteenth Meeting: RTCA Special Committee 217, Terrain and Airport Mapping Databases, Joint With...

Federal Register 2010, 2011, 2012, 2013, 2014

2012-08-08

... Committee 217, Terrain and Airport Mapping Databases, Joint With EUROCAE WG-44 AGENCY: Federal Aviation... 217, Terrain and Airport Mapping Databases, Joint with EUROCAE WG-44. SUMMARY: The FAA is issuing this... Mapping Databases, Joint with EUROCAE WG-44. DATES: The meeting will be held September 10-14, 2012, from 9...

The Seismotectonic Map of Africa

NASA Astrophysics Data System (ADS)

Meghraoui, Mustapha

2015-04-01

We present the Seismotectonic Map of Africa based on a geological, geophysical and geodetic database including the instrumental seismicity and re-appraisal of large historical events with harmonization and homogenization of earthquake parameters in catalogues. Although the seismotectonic framework and mapping of the African continent is a difficult task, several previous and ongoing projects provide a wealth of data and outstanding results. The database of large and moderate earthquakes in different geological domains includes the coseismic and Quaternary faulting that reveals the complex nature of the active tectonics in Africa. The map also benefits from previous works on local and regional seismotectonic maps that needed to be integrated with the lithospheric and upper mantle structures from tomographic anisotropy and gravity anomaly into a continental framework. The synthesis of earthquake and volcanic studies with the analysis of long-term (late Quaternary) and short-term (last decades and centuries) active deformation observed with geodetic and other approaches presented along with the seismotectonic map serves as a basis for hazard calculations and the reduction of seismic risks. The map may also be very useful in the assessment of seismic hazard and mitigation of earthquake risk for significant infrastructures and their implications in the socio-economic impact in Africa. In addition, the constant population increase and infrastructure growth in the continent that exacerbate the earthquake risk justify the necessity for a continuous updating of the seismotectonic map. The database and related map are prepared in the framework of the IGC Project-601 "Seismotectonics and Seismic Hazards in Africa" of UNESCO-IUGS, funded by the Swedish International Development Agency and UNESCO-Nairobi for a period of 4 years (2011 - 2014), extended to 2016. * Mustapha Meghraoui (Coordinator) EOST - IPG Strasbourg CNRS-UMR 7516 m.meghraoui@unistra.fr corresponding author. Paulina Amponsah (AECG, Accra), Abdelhakim Ayadi (CRAAG, Algiers), Atalay Ayele (Univ. Addis Ababa), Ateba Bekoa (Bueah Univ. Yaounde), Abdunnur Bensuleman (Tripoli Univ.), Damien Delvaux (MRAC-Tervuren); Mohamed El Gabry (NRIAG, Cairo), Rui-Manuel Fernandes (Beira Univ.) ; Vunganai Midzi & Magda Roos (CGS, Pretoria), Youssef Timoulali (Univ. Mohamed V, Rabat). Website: http://eost.u-strasbg.fr/igcp601/index.html

Preliminary surficial geologic map database of the Amboy 30 x 60 minute quadrangle, California

USGS Publications Warehouse

Bedford, David R.; Miller, David M.; Phelps, Geoffrey A.

2006-01-01

The surficial geologic map database of the Amboy 30x60 minute quadrangle presents characteristics of surficial materials for an area approximately 5,000 km2 in the eastern Mojave Desert of California. This map consists of new surficial mapping conducted between 2000 and 2005, as well as compilations of previous surficial mapping. Surficial geology units are mapped and described based on depositional process and age categories that reflect the mode of deposition, pedogenic effects occurring post-deposition, and, where appropriate, the lithologic nature of the material. The physical properties recorded in the database focus on those that drive hydrologic, biologic, and physical processes such as particle size distribution (PSD) and bulk density. This version of the database is distributed with point data representing locations of samples for both laboratory determined physical properties and semi-quantitative field-based information. Future publications will include the field and laboratory data as well as maps of distributed physical properties across the landscape tied to physical process models where appropriate. The database is distributed in three parts: documentation, spatial map-based data, and printable map graphics of the database. Documentation includes this file, which provides a discussion of the surficial geology and describes the format and content of the map data, a database 'readme' file, which describes the database contents, and FGDC metadata for the spatial map information. Spatial data are distributed as Arc/Info coverage in ESRI interchange (e00) format, or as tabular data in the form of DBF3-file (.DBF) file formats. Map graphics files are distributed as Postscript and Adobe Portable Document Format (PDF) files, and are appropriate for representing a view of the spatial database at the mapped scale.

Geologic map and map database of parts of Marin, San Francisco, Alameda, Contra Costa, and Sonoma counties, California

USGS Publications Warehouse

Blake, M.C.; Jones, D.L.; Graymer, R.W.; digital database by Soule, Adam

2000-01-01

This digital map database, compiled from previously published and unpublished data, and new mapping by the authors, represents the general distribution of bedrock and surficial deposits in the mapped area. Together with the accompanying text file (mageo.txt, mageo.pdf, or mageo.ps), it provides current information on the geologic structure and stratigraphy of the area covered. The database delineates map units that are identified by general age and lithology following the stratigraphic nomenclature of the U.S. Geological Survey. The scale of the source maps limits the spatial resolution (scale) of the database to 1:62,500 or smaller general distribution of bedrock and surficial deposits in the mapped area. Together with the accompanying text file (mageo.txt, mageo.pdf, or mageo.ps), it provides current information on the geologic structure and stratigraphy of the area covered. The database delineates map units that are identified by general age and lithology following the stratigraphic nomenclature of the U.S. Geological Survey. The scale of the source maps limits the spatial resolution (scale) of the database to 1:62,500 or smaller.

Preliminary geologic map of the Oat Mountain 7.5' quadrangle, Southern California: a digital database

USGS Publications Warehouse

Yerkes, R.F.; Campbell, Russell H.

1995-01-01

This database, identified as "Preliminary Geologic Map of the Oat Mountain 7.5' Quadrangle, southern California: A Digital Database," has been approved for release and publication by the Director of the USGS. Although this database has been reviewed and is substantially complete, the USGS reserves the right to revise the data pursuant to further analysis and review. This database is released on condition that neither the USGS nor the U. S. Government may be held liable for any damages resulting from its use. This digital map database is compiled from previously published sources combined with some new mapping and modifications in nomenclature. The geologic map database delineates map units that are identified by general age and lithology following the stratigraphic nomenclature of the U. S. Geological Survey. For detailed descriptions of the units, their stratigraphic relations and sources of geologic mapping consult Yerkes and Campbell (1993). More specific information about the units may be available in the original sources.

Performance analysis of different database in new internet mapping system

NASA Astrophysics Data System (ADS)

Yao, Xing; Su, Wei; Gao, Shuai

2017-03-01

In the Mapping System of New Internet, Massive mapping entries between AID and RID need to be stored, added, updated, and deleted. In order to better deal with the problem when facing a large number of mapping entries update and query request, the Mapping System of New Internet must use high-performance database. In this paper, we focus on the performance of Redis, SQLite, and MySQL these three typical databases, and the results show that the Mapping System based on different databases can adapt to different needs according to the actual situation.

Development and characterization of a 3D high-resolution terrain database

NASA Astrophysics Data System (ADS)

Wilkosz, Aaron; Williams, Bryan L.; Motz, Steve

2000-07-01

A top-level description of methods used to generate elements of a high resolution 3D characterization database is presented. The database elements are defined as ground plane elevation map, vegetation height elevation map, material classification map, discrete man-made object map, and temperature radiance map. The paper will cover data collection by means of aerial photography, techniques of soft photogrammetry used to derive the elevation data, and the methodology followed to generate the material classification map. The discussion will feature the development of the database elements covering Fort Greely, Alaska. The developed databases are used by the US Army Aviation and Missile Command to evaluate the performance of various missile systems.

Preliminary geologic map of the Piru 7.5' quadrangle, southern California: a digital database

USGS Publications Warehouse

Yerkes, R.F.; Campbell, Russell H.

1995-01-01

This Open-File report is a digital geologic map database. This pamphlet serves to introduce and describe the digital data. There is no paper map included in the Open-File report. This digital map database is compiled from previously published sources combined with some new mapping and modifications in nomenclature. The geologic map database delineates map units that are identified by general age and lithology following the stratigraphic nomenclature of the U. S. Geological Survey. For detailed descriptions of the units, their stratigraphic relations and sources of geologic mapping consult Yerkes and Campbell (1995). More specific information about the units may be available in the original sources.

Geologic map and map database of the Palo Alto 30' x 60' quadrangle, California

USGS Publications Warehouse

Brabb, E.E.; Jones, D.L.; Graymer, R.W.

2000-01-01

This digital map database, compiled from previously published and unpublished data, and new mapping by the authors, represents the general distribution of bedrock and surficial deposits in the mapped area. Together with the accompanying text file (pamf.ps, pamf.pdf, pamf.txt), it provides current information on the geologic structure and stratigraphy of the area covered. The database delineates map units that are identified by general age and lithology following the stratigraphic nomenclature of the U.S. Geological Survey. The scale of the source maps limits the spatial resolution (scale) of the database to 1:62,500 or smaller.

Geologic map and map database of western Sonoma, northernmost Marin, and southernmost Mendocino counties, California

USGS Publications Warehouse

Blake, M.C.; Graymer, R.W.; Stamski, R.E.

2002-01-01

This digital map database, compiled from previously published and unpublished data, and new mapping by the authors, represents the general distribution of bedrock and surficial deposits in the mapped area. Together with the accompanying text file (wsomf.ps, wsomf.pdf, wsomf.txt), it provides current information on the geologic structure and stratigraphy of the area covered. The database delineates map units that are identified by general age and lithology following the stratigraphic nomenclature of the U.S. Geological Survey. The scale of the source maps limits the spatial resolution (scale) of the database to 1:62,500 or smaller.

Enhancements to Demilitarization Process Maps Program (ProMap)

DTIC Science & Technology

2016-10-14

map tool, ProMap, was improved by implementing new features, and sharing data with MIDAS and AMDIT databases . Specifically, process efficiency was...improved by 1) providing access to APE information contained in the AMDIT database directly from inside ProMap when constructing a process map, 2...what equipment can be efficiently used to demil a particular munition. Associated with this task was the upgrade of the AMDIT database so that

Quaternary Geology and Liquefaction Susceptibility, San Francisco, California 1:100,000 Quadrangle: A Digital Database

USGS Publications Warehouse

Knudsen, Keith L.; Noller, Jay S.; Sowers, Janet M.; Lettis, William R.

1997-01-01

This Open-File report is a digital geologic map database. This pamphlet serves to introduce and describe the digital data. There are no paper maps included in the Open-File report. The report does include, however, PostScript plot files containing the images of the geologic map sheets with explanations, as well as the accompanying text describing the geology of the area. For those interested in a paper plot of information contained in the database or in obtaining the PostScript plot files, please see the section entitled 'For Those Who Aren't Familiar With Digital Geologic Map Databases' below. This digital map database, compiled from previously unpublished data, and new mapping by the authors, represents the general distribution of surficial deposits in the San Francisco bay region. Together with the accompanying text file (sf_geo.txt or sf_geo.pdf), it provides current information on Quaternary geology and liquefaction susceptibility of the San Francisco, California, 1:100,000 quadrangle. The database delineates map units that are identified by general age and lithology following the stratigraphic nomenclature of the U.S. Geological Survey. The scale of the source maps limits the spatial resolution (scale) of the database to 1:100,000 or smaller. The content and character of the database, as well as three methods of obtaining the database, are described below.

Forest fire risk assessment-an integrated approach based on multicriteria evaluation.

PubMed

Goleiji, Elham; Hosseini, Seyed Mohsen; Khorasani, Nematollah; Monavari, Seyed Masoud

2017-11-06

The present study deals with application of the weighted linear combination method for zoning of forest fire risk in Dohezar and Sehezar region of Mazandaran province in northern Iran. In this study, the effective criteria for fires were identified by the Delphi method, and these included ecological and socioeconomic parameters. In this regard, the first step comprised of digital layers; the required data were provided from databases, related centers, and field data collected in the region. Then, the map of criteria was digitized in a geographic information system, and all criteria and indexes were normalized by fuzzy logic. After that, the geographic information system (GIS 10.3) was integrated with the Weighted Linear Combination and the Analytical Network Process, to produce zonation of the forest fire risk map in the Dohezar and Sehezar region. In order to analyze accuracy of the evaluation, the results obtained from the study were compared to records of former fire incidents in the region. This was done using the Kappa coefficient test and a receiver operating characteristic curve. The model showing estimations for forest fire risk explained that the prepared map had accuracy of 90% determined by the Kappa coefficient test and the value of 0.924 by receiver operating characteristic. These results showed that the prepared map had high accuracy and efficacy.

The digital geologic map of Colorado in ARC/INFO format, Part A. Documentation

USGS Publications Warehouse

Green, Gregory N.

1992-01-01

This geologic map was prepared as a part of a study of digital methods and techniques as applied to complex geologic maps. The geologic map was digitized from the original scribe sheets used to prepare the published Geologic Map of Colorado (Tweto 1979). Consequently the digital version is at 1:500,000 scale using the Lambert Conformal Conic map projection parameters of the state base map. Stable base contact prints of the scribe sheets were scanned on a Tektronix 4991 digital scanner. The scanner automatically converts the scanned image to an ASCII vector format. These vectors were transferred to a VAX minicomputer, where they were then loaded into ARC/INFO. Each vector and polygon was given attributes derived from the original 1979 geologic map. This database was developed on a MicroVAX computer system using VAX V 5.4 nd ARC/INFO 5.0 software. UPDATE: April 1995, The update was done solely for the purpose of adding the abilitly to plot to an HP650c plotter. Two new ARC/INFO plot AMLs along with a lineset and shadeset for the HP650C design jet printer have been included. These new files are COLORADO.650, INDEX.650, TWETOLIN.E00 and TWETOSHD.E00. These files were created on a UNIX platform with ARC/INFO 6.1.2. Updated versions of INDEX.E00, CONTACT.E00, LINE.E00, DECO.E00 and BORDER.E00 files that included the newly defined HP650c items are also included. * Any use of trade, product, or firm names is for descriptive purposes only and does not imply endorsement by the U.S. Government. Descriptors: The Digital Geologic Map of Colorado in ARC/INFO Format Open-File Report 92-050

The digital geologic map of Colorado in ARC/INFO format, Part B. Common files

USGS Publications Warehouse

Green, Gregory N.

1992-01-01

This geologic map was prepared as a part of a study of digital methods and techniques as applied to complex geologic maps. The geologic map was digitized from the original scribe sheets used to prepare the published Geologic Map of Colorado (Tweto 1979). Consequently the digital version is at 1:500,000 scale using the Lambert Conformal Conic map projection parameters of the state base map. Stable base contact prints of the scribe sheets were scanned on a Tektronix 4991 digital scanner. The scanner automatically converts the scanned image to an ASCII vector format. These vectors were transferred to a VAX minicomputer, where they were then loaded into ARC/INFO. Each vector and polygon was given attributes derived from the original 1979 geologic map. This database was developed on a MicroVAX computer system using VAX V 5.4 nd ARC/INFO 5.0 software. UPDATE: April 1995, The update was done solely for the purpose of adding the abilitly to plot to an HP650c plotter. Two new ARC/INFO plot AMLs along with a lineset and shadeset for the HP650C design jet printer have been included. These new files are COLORADO.650, INDEX.650, TWETOLIN.E00 and TWETOSHD.E00. These files were created on a UNIX platform with ARC/INFO 6.1.2. Updated versions of INDEX.E00, CONTACT.E00, LINE.E00, DECO.E00 and BORDER.E00 files that included the newly defined HP650c items are also included. * Any use of trade, product, or firm names is for descriptive purposes only and does not imply endorsement by the U.S. Government. Descriptors: The Digital Geologic Map of Colorado in ARC/INFO Format Open-File Report 92-050

KSC-99pp0503

NASA Image and Video Library

1999-05-07

Inside the Space Station Processing Facility, the Shuttle Radar Topography Mission (SRTM) is maneuvered into place to prepare it for launch targeted for September 1999. The primary payload on mission STS-99, the SRTM consists of a specially modified radar system that will fly onboard the Space Shuttle during the 11-day mission. This radar system will gather data that will result in the most accurate and complete topographic map of the Earth's surface that has ever been assembled. SRTM is an international project spearheaded by the National Imagery and Mapping Agency and NASA, with participation of the German Aerospace Center DLR. Its objective is to obtain the most complete high-resolution digital topographic database of the Earth

KSC-99pp0502

NASA Image and Video Library

1999-05-07

The Shuttle Radar Topography Mission (SRTM) is moved into the Space Station Processing Facility to prepare it for launch targeted for September 1999. The primary payload on mission STS-99, the SRTM consists of a specially modified radar system that will fly onboard the Space Shuttle during the 11-day mission. This radar system will gather data that will result in the most accurate and complete topographic map of the Earth's surface that has ever been assembled. SRTM is an international project spearheaded by the National Imagery and Mapping Agency and NASA, with participation of the German Aerospace Center DLR. Its objective is to obtain the most complete high-resolution digital topographic database of the Earth

Algorithms and methodology used in constructing high-resolution terrain databases

NASA Astrophysics Data System (ADS)

Williams, Bryan L.; Wilkosz, Aaron

1998-07-01

This paper presents a top-level description of methods used to generate high-resolution 3D IR digital terrain databases using soft photogrammetry. The 3D IR database is derived from aerial photography and is made up of digital ground plane elevation map, vegetation height elevation map, material classification map, object data (tanks, buildings, etc.), and temperature radiance map. Steps required to generate some of these elements are outlined. The use of metric photogrammetry is discussed in the context of elevation map development; and methods employed to generate the material classification maps are given. The developed databases are used by the US Army Aviation and Missile Command to evaluate the performance of various missile systems. A discussion is also presented on database certification which consists of validation, verification, and accreditation procedures followed to certify that the developed databases give a true representation of the area of interest, and are fully compatible with the targeted digital simulators.

International workshop on chromosome 3. Final report, April 15, 1991--April 14, 1992

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gemmill, R.M.

1992-07-01

The Second Workshop on Human Chromosome 3 was held on April 4--5, 1991 at Denver, Colorado. There were 43 participants representing 8 nations. The workshop participants reviewed the current state of the chromosome 3 map, both physical and genetic, and prepared lists of markers and cell lines to be made commonly available. These markers and cell lines should be incorporated into the mapping efforts of diverse groups to permit the integration of data and development of consensus maps at future workshops. Region specific efforts were described for sections of the chromosome harboring genes thought to be involved in certain diseasesmore » including Von Hippel-Lindau disease, 3p-syndrome, lung cancer and renal cancer. Selected papers have been processed separately for inclusion in the Energy Science and Technology Database.« less

Digital database of the geologic map of the island of Hawai'i [Hawaii

USGS Publications Warehouse

Trusdell, Frank A.; Wolfe, Edward W.; Morris, Jean

2006-01-01

This online publication (DS 144) provides the digital database for the printed map by Edward W. Wolfe and Jean Morris (I-2524-A; 1996). This digital database contains all the information used to publish U.S. Geological Survey Geologic Investigations Series I-2524-A (available only in paper form; see http://pubs.er.usgs.gov/pubs/i/i2524A). The database contains the distribution and relationships of volcanic and surficial-sedimentary deposits on the island of Hawai‘i. This dataset represents the geologic history for the five volcanoes that comprise the Island of Hawai'i. The volcanoes are Kohala, Mauna Kea, Hualalai, Mauna Loa and Kīlauea.This database of the geologic map contributes to understanding the geologic history of the Island of Hawai‘i and provides the basis for understanding long-term volcanic processes in an intra-plate ocean island volcanic system. In addition the database also serves as a basis for producing volcanic hazards assessment for the island of Hawai‘i. Furthermore it serves as a base layer to be used for interdisciplinary research.This online publication consists of a digital database of the geologic map, an explanatory pamphlet, description of map units, correlation of map units diagram, and images for plotting. Geologic mapping was compiled at a scale of 1:100,000 for the entire mapping area. The geologic mapping was compiled as a digital geologic database in ArcInfo GIS format.

75 FR 10552 - Sixth Meeting-RTCA Special Committee 217: Joint With EUROCAE WG-44 Terrain and Airport Mapping...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-03-08

... 217: Joint With EUROCAE WG- 44 Terrain and Airport Mapping Databases AGENCY: Federal Aviation... Airport Mapping Databases. SUMMARY: The FAA is issuing this notice to advise the public of a meeting of RTCA Special Committee 217: Joint with EUROCAE WG-44 Terrain and Airport Mapping Databases. DATES: The...

76 FR 27744 - Eighth Meeting-RTCA Special Committee 217: Joint With EUROCAE WG-44 Terrain and Airport Mapping...

Federal Register 2010, 2011, 2012, 2013, 2014

2011-05-12

... Committee 217: Joint With EUROCAE WG-44 Terrain and Airport Mapping Databases AGENCY: Federal Aviation... Airport Mapping Databases. SUMMARY: The FAA is issuing this notice to advise the public of a meeting of RTCA Special Committee 217: Joint with EUROCAE WG-44 Terrain and Airport Mapping Databases. DATES: The...

76 FR 54527 - Ninth Meeting-RTCA Special Committee 217: Joint With EUROCAE WG-44 Terrain and Airport Mapping...

Federal Register 2010, 2011, 2012, 2013, 2014

2011-09-01

... 217: Joint With EUROCAE WG- 44 Terrain and Airport Mapping Databases AGENCY: Federal Aviation... Airport Mapping Databases. SUMMARY: The FAA is issuing this notice to advise the public of a meeting of RTCA Special Committee 217: Joint with EUROCAE WG-44 Terrain and Airport Mapping Databases. DATES: The...

76 FR 6179 - Eighth Meeting-RTCA Special Committee 217: Joint With EUROCAE WG-44 Terrain and Airport Mapping...

Federal Register 2010, 2011, 2012, 2013, 2014

2011-02-03

... Committee 217: Joint With EUROCAE WG-44 Terrain and Airport Mapping Databases AGENCY: Federal Aviation... Airport Mapping Databases. SUMMARY: The FAA is issuing this notice to advise the public of a meeting of RTCA Special Committee 217: Joint with EUROCAE WG-44 Terrain and Airport Mapping Databases. DATES: The...

Geologic map and map database of northeastern San Francisco Bay region, California, [including] most of Solano County and parts of Napa, Marin, Contra Costa, San Joaquin, Sacramento, Yolo, and Sonoma Counties

USGS Publications Warehouse

Graymer, Russell Walter; Jones, David Lawrence; Brabb, Earl E.

2002-01-01

This digital map database, compiled from previously published and unpublished data, and new mapping by the authors, represents the general distribution of bedrock and surficial deposits in the mapped area. Together with the accompanying text file (nesfmf.ps, nesfmf.pdf, nesfmf.txt), it provides current information on the geologic structure and stratigraphy of the area covered. The database delineates map units that are identified by general age and lithology following the stratigraphic nomenclature of the U.S. Geological Survey. The scale of the source maps limits the spatial resolution (scale) of the database to 1:62,500 or smaller.

Geology of Point Reyes National Seashore and vicinity, California: a digital database

USGS Publications Warehouse

Clark, Jospeh C.; Brabb, Earl E.

1997-01-01

This Open-File report is a digital geologic map database. This pamphlet serves to introduce and describe the digital data. There is no paper map included in the Open-File report. The report does include, however, a PostScript plot file containing an image of the geologic map sheet with explanation, as well as the accompanying text describing the geology of the area. For those interested in a paper plot of information contained in the database or in obtaining the PostScript plot files, please see the section entitled 'For Those Who Aren't Familiar With Digital Geologic Map Databases' below. This digital map database, compiled from previously published and unpublished data and new mapping by the authors, represents the general distribution of surficial deposits and rock units in Point Reyes and surrounding areas. Together with the accompanying text file (pr-geo.txt or pr-geo.ps), it provides current information on the stratigraphy and structural geology of the area covered. The database delineates map units that are identified by general age and lithology following the stratigraphic nomenclature of the U.S. Geological Survey. The scale of the source maps limits the spatial resolution (scale) of the database to 1:48,000 or smaller.

PoMaMo--a comprehensive database for potato genome data.

PubMed

Meyer, Svenja; Nagel, Axel; Gebhardt, Christiane

2005-01-01

A database for potato genome data (PoMaMo, Potato Maps and More) was established. The database contains molecular maps of all twelve potato chromosomes with about 1000 mapped elements, sequence data, putative gene functions, results from BLAST analysis, SNP and InDel information from different diploid and tetraploid potato genotypes, publication references, links to other public databases like GenBank (http://www.ncbi.nlm.nih.gov/) or SGN (Solanaceae Genomics Network, http://www.sgn.cornell.edu/), etc. Flexible search and data visualization interfaces enable easy access to the data via internet (https://gabi.rzpd.de/PoMaMo.html). The Java servlet tool YAMB (Yet Another Map Browser) was designed to interactively display chromosomal maps. Maps can be zoomed in and out, and detailed information about mapped elements can be obtained by clicking on an element of interest. The GreenCards interface allows a text-based data search by marker-, sequence- or genotype name, by sequence accession number, gene function, BLAST Hit or publication reference. The PoMaMo database is a comprehensive database for different potato genome data, and to date the only database containing SNP and InDel data from diploid and tetraploid potato genotypes.

PoMaMo—a comprehensive database for potato genome data

PubMed Central

Meyer, Svenja; Nagel, Axel; Gebhardt, Christiane

2005-01-01

A database for potato genome data (PoMaMo, Potato Maps and More) was established. The database contains molecular maps of all twelve potato chromosomes with about 1000 mapped elements, sequence data, putative gene functions, results from BLAST analysis, SNP and InDel information from different diploid and tetraploid potato genotypes, publication references, links to other public databases like GenBank (http://www.ncbi.nlm.nih.gov/) or SGN (Solanaceae Genomics Network, http://www.sgn.cornell.edu/), etc. Flexible search and data visualization interfaces enable easy access to the data via internet (https://gabi.rzpd.de/PoMaMo.html). The Java servlet tool YAMB (Yet Another Map Browser) was designed to interactively display chromosomal maps. Maps can be zoomed in and out, and detailed information about mapped elements can be obtained by clicking on an element of interest. The GreenCards interface allows a text-based data search by marker-, sequence- or genotype name, by sequence accession number, gene function, BLAST Hit or publication reference. The PoMaMo database is a comprehensive database for different potato genome data, and to date the only database containing SNP and InDel data from diploid and tetraploid potato genotypes. PMID:15608284

Distinguishing between the partial-mapping preparation hypothesis and the failure-to-engage hypothesis of residual switch costs.

PubMed

Lindsen, Job P; de Jong, Ritske

2010-10-01

Lien, Ruthruff, Remington, & Johnston (2005) reported residual switch cost differences between stimulus-response (S-R) pairs and proposed the partial-mapping preparation (PMP) hypothesis, which states that advance preparation will typically be limited to a subset of S-R pairs because of structural capacity limitations, to account for these differences. Alternatively, the failure-to-engage (FTE) hypothesis does not allow for differences in probability of advance preparation between S-R pairs within a set; it accounts for residual switch cost differences by assuming that benefits of advance preparation may differ between S-R pairs. Three Experiments were designed to test between these hypotheses. No capacity limitations of the type assumed by the PMP hypothesis were found for many participants in Experiment 1. In Experiments 2 and 3, no evidence was found for the dependency of residual switch cost differences between S-R pairs on response-stimulus interval that is predicted by the PMP hypothesis. Mixture-model analysis of reaction times distributions in Experiment 3 provided strong support for the FTE hypothesis over the PMP hypothesis. Simulation studies with a computational implementation of the FTE hypothesis showed that it is able to account in great detail for the results of the present study. Together, these results provide strong evidence against the PMP hypothesis and support the FTE hypothesis that advance preparation probabilistically fails or succeeds at the level of the task set. (PsycINFO Database Record (c) 2010 APA, all rights reserved).

Integrating Databases with Maps: The Delivery of Cultural Data through TimeMap.

ERIC Educational Resources Information Center

Johnson, Ian

TimeMap is a unique integration of database management, metadata and interactive maps, designed to contextualise and deliver cultural data through maps. TimeMap extends conventional maps with the time dimension, creating and animating maps "on-the-fly"; delivers them as a kiosk application or embedded in Web pages; links flexibly to…

76 FR 70531 - Tenth Meeting: RTCA Special Committee 217/EUROCAE WG-44: Terrain and Airport Mapping Databases

Federal Register 2010, 2011, 2012, 2013, 2014

2011-11-14

... 217/EUROCAE WG-44: Terrain and Airport Mapping Databases AGENCY: Federal Aviation Administration (FAA... Databases: For the tenth meeting DATES: The meeting will be held December 6-9, 2011, from 9 a.m. to 5 p.m... Mapping Databases. The agenda will include the following: December 6, 2011 Open Plenary Session. Chairman...

CRETACEOUS CLIMATE SENSITIVITY STUDY USING DINOSAUR & PLANT PALEOBIOGEOGRAPHY

NASA Astrophysics Data System (ADS)

Goswami, A.; Main, D. J.; Noto, C. R.; Moore, T. L.; Scotese, C.

2009-12-01

The Early Cretaceous was characterized by cool poles and moderate global temperatures (~16° C). During the mid and late Cretaceous, long-term global warming (~20° - 22° C) was driven by increasing levels of CO2, rising sea level (lowering albedo) and the continuing breakup of Pangea. Paleoclimatic reconstructions for four time intervals during the Cretaceous: Middle Campanian (80 Ma), Cenomanian/Turonian (90 Ma), Early Albian (110 Ma) and Barremian-Hauterivian (130Ma) are presented here. These paleoclimate simulations were prepared using the Fast Ocean and Atmosphere Model (FOAM). The simulated results show the pattern of the pole-to-Equator temperature gradients, rainfall, surface run-off, the location of major rivers and deltas. In order to investigate the effect of potential dispersal routes on paleobiogeographic patterns, a time-slice series of maps from Early - Late Cretaceous were produced showing plots of dinosaur and plant fossil distributions. These Maps were created utilizing: 1) plant fossil localities from the GEON and Paleobiology (PBDB) databases; and 2) dinosaur fossil localities from an updated version of the Dinosauria (Weishampel, 2004) database. These results are compared to two different types of datasets, 1) Paleotemperature database for the Cretaceous and 2) locality data obtained from GEON, PBDB and Dinosauria database. Global latitudinal mean temperatures from both the model and the paelotemperature database were plotted on a series of latitudinal graphs along with the distributions of fossil plants and dinosaurs. It was found that most dinosaur localities through the Cretaceous tend to cluster within specific climate belts, or envelopes. Also, these Cretaceous maps show variance in biogeographic zonation of both plants and dinosaurs that is commensurate with reconstructed climate patterns and geography. These data are particularly useful for understanding the response of late Mesozoic ecosystems to geographic and climatic conditions that differed markedly from the present. Studies of past biotas and their changes may elucidate the role of climatic and geographic factors in driving changes in species distributions, ecosystem organization, and evolutionary dynamics over time.

Seasonal land-cover regions of the United States

USGS Publications Warehouse

Loveland, Thomas R.; Merchant, James W.; Brown, Jesslyn F.; Ohlen, Donald O.; Reed, Bradley C.; Olson, Paul; Hutchinson, John

1995-01-01

Global-change investigations have been hindered by deficiencies in the availability and quality of land-cover data. The U.S. Geological Survey and the University of Nebraska-Lincoln have collaborated on the development of a new approach to land-cover characterization that attempts to address requirements of the global-change research community and others interested in regional patterns of land cover. An experimental 1 -kilometer-resolution database of land-cover characteristics for the coterminous U.S. has been prepared to test and evaluate the approach. Using multidate Advanced Very High Resolution Radiometer (AVHRR) satellite data complemented by elevation, climate, ecoregions, and other digital spatial datasets, the authors define 152, seasonal land-cover regions. The regionalization is based on a taxonomy of areas with respect to data on land cover, seasonality or phenology, and relative levels of primary production. The resulting database consists of descriptions of the vegetation, land cover, and seasonal, spectral, and site characteristics for each region. These data are used in the construction of an illustrative 1:7,500,000-scaIe map of the seasonal land-cover regions as well as of smaller-scale maps portraying general land cover and seasonality. The seasonal land-cover characteristics database can also be tailored to provide a broad range of other landscape parameters useful in national and global-scale environmental modeling and assessment.

A concept for the modernization of underground mining master maps based on the enrichment of data definitions and spatial database technology

NASA Astrophysics Data System (ADS)

Krawczyk, Artur

2018-01-01

In this article, topics regarding the technical and legal aspects of creating digital underground mining maps are described. Currently used technologies and solutions for creating, storing and making digital maps accessible are described in the context of the Polish mining industry. Also, some problems with the use of these technologies are identified and described. One of the identified problems is the need to expand the range of mining map data provided by survey departments to other mining departments, such as ventilation maintenance or geological maintenance. Three solutions are proposed and analyzed, and one is chosen for further analysis. The analysis concerns data storage and making survey data accessible not only from paper documentation, but also directly from computer systems. Based on enrichment data, new processing procedures are proposed for a new way of presenting information that allows the preparation of new cartographic representations (symbols) of data with regard to users' needs.

Spatial digital database for the tectonic map of Southeast Arizona

USGS Publications Warehouse

map by Drewes, Harald; digital database by Fields, Robert A.; Hirschberg, Douglas M.; Bolm, Karen S.

2002-01-01

A spatial database was created for Drewes' (1980) tectonic map of southeast Arizona: this database supercedes Drewes and others (2001, ver. 1.0). Staff and a contractor at the U.S. Geological Survey in Tucson, Arizona completed an interim digital geologic map database for the east part of the map in 2001, made revisions to the previously released digital data for the west part of the map (Drewes and others, 2001, ver. 1.0), merged data files for the east and west parts, and added additional data not previously captured. Digital base map data files (such as topography, roads, towns, rivers and lakes) are not included: they may be obtained from a variety of commercial and government sources. This digital geospatial database is one of many being created by the U.S. Geological Survey as an ongoing effort to provide geologic information in a geographic information system (GIS) for use in spatial analysis. The resulting digital geologic map database can be queried in many ways to produce a variety of geologic maps and derivative products. Because Drewes' (1980) map sheets include additional text and graphics that were not included in this report, scanned images of his maps (i1109_e.jpg, i1109_w.jpg) are included as a courtesy to the reader. This database should not be used or displayed at any scale larger than 1:125,000 (for example, 1:100,000 or 1:24,000). The digital geologic map plot files (i1109_e.pdf and i1109_w.pdf) that are provided herein are representations of the database (see Appendix A). The map area is located in southeastern Arizona (fig. 1). This report describes the map units (from Drewes, 1980), the methods used to convert the geologic map data into a digital format, the ArcInfo GIS file structures and relationships, and explains how to download the digital files from the U.S. Geological Survey public access World Wide Web site on the Internet. The manuscript and digital data review by Helen Kayser (Information Systems Support, Inc.) is greatly appreciated.

KSC-99pp0505

NASA Image and Video Library

1999-05-07

In the Space Station Processing Facility (SSPF), workers (lower right) disconnect the transport vehicle from the Shuttle Radar Topography Mission (SRTM) after moving it into the building for pre-launch preparations. The primary payload on mission STS-99, the SRTM consists of a specially modified radar system that will fly onboard the Space Shuttle during the 11-day mission targeted for launch in September 1999. This radar system will gather data that will result in the most accurate and complete topographic map of the Earth's surface that has ever been assembled. SRTM is an international project spearheaded by the National Imagery and Mapping Agency and NASA, with participation of the German Aerospace Center DLR. Its objective is to obtain the most complete high-resolution digital topographic database of the Earth

Geologic Map of the Tucson and Nogales Quadrangles, Arizona (Scale 1:250,000): A Digital Database

USGS Publications Warehouse

Peterson, J.A.; Berquist, J.R.; Reynolds, S.J.; Page-Nedell, S. S.; Digital database by Oland, Gustav P.; Hirschberg, Douglas M.

2001-01-01

The geologic map of the Tucson-Nogales 1:250,000 scale quadrangle (Peterson and others, 1990) was digitized by U.S. Geological Survey staff and University of Arizona contractors at the Southwest Field Office, Tucson, Arizona, in 2000 for input into a geographic information system (GIS). The database was created for use as a basemap in a decision support system designed by the National Industrial Minerals and Surface Processes project. The resulting digital geologic map database can be queried in many ways to produce a variety of geologic maps. Digital base map data files (topography, roads, towns, rivers and lakes, etc.) are not included; they may be obtained from a variety of commercial and government sources. Additionally, point features, such as strike and dip, were not captured from the original paper map and are not included in the database. This database is not meant to be used or displayed at any scale larger than 1:250,000 (for example, 1:100,000 or 1:24,000). The digital geologic map graphics and plot files that are provided in the digital package are representations of the digital database. They are not designed to be cartographic products.

Digital coordinates and age of more than 13,000 foraminifers samples collected by Chevron Petroleum geologists in California

USGS Publications Warehouse

Malmblorg, William T.; West, William B.; Brabb, Earl E.; Parker, John M.

2008-01-01

The general location and age of more than 33,500 mostly foraminifer samples from Chevron surface localities in nearly 600 U.S. Geological Survey (USGS) 7.5' quadrangles from California were provided by Brabb and Parker (2003). Barren and non-diagnostic samples plus many that have no paleontologic information were omitted to provide a revised list for more than 27,000 of these samples by Brabb and Parker (2005). The locations for many of these samples were recorded by Chevron geoscientists on topographic maps (originals now in the USGS Library in Menlo Park, Calif.). The recent availability of digital databases for geologic and topographic maps has provided the opportunity to prepare a database of the locations of these Chevron samples so that the information can be combined with geology and topography for plotting or geospatial analysis. This report provides specific locations for more than 13,000 samples in central California that have enough paleontologic information to determine their age but omits thousands of samples that are too closely spaced to differentiate or those that have only a general location.

77 FR 14584 - Eleventh Meeting: RTCA Special Committee 217, Joint With EUROCAE Working Group-44, Terrain and...

Federal Register 2010, 2011, 2012, 2013, 2014

2012-03-12

... Committee 217, Joint With EUROCAE Working Group--44, Terrain and Airport Mapping Databases AGENCY: Federal... Special Committee 217, Joint with EUROCAE Working Group--44, Terrain and Airport Mapping Databases... Committee 217, Joint with EUROCAE Working Group--44, Terrain and Airport Mapping Databases. DATES: The...

Geologic map of the Grand Canyon 30' x 60' quadrangle, Coconino and Mohave Counties, northwestern Arizona

USGS Publications Warehouse

Billingsley, G.H.

2000-01-01

This digital map database, compiled from previously published and unpublished data as well as new mapping by the author, represents the general distribution of bedrock and surficial deposits in the map area. Together with the accompanying pamphlet, it provides current information on the geologic structure and stratigraphy of the Grand Canyon area. The database delineates map units that are identified by general age and lithology following the stratigraphic nomenclature of the U.S. Geological Survey. The scale of the source maps limits the spatial resolution (scale) of the database to 1:100,000 or smaller.

Building MapObjects attribute field in cadastral database based on the method of Jackson system development

NASA Astrophysics Data System (ADS)

Chen, Zhu-an; Zhang, Li-ting; Liu, Lu

2009-10-01

ESRI's GIS components MapObjects are applied in many cadastral information system because of its miniaturization and flexibility. Some cadastral information was saved in cadastral database directly by MapObjects's Shape file format in this cadastral information system. However, MapObjects didn't provide the function of building attribute field for map layer's attribute data file in cadastral database and user cann't save the result of analysis. This present paper designed and realized the function of building attribute field in MapObjects based on the method of Jackson's system development.

GLIMS Glacier Database: Status and Challenges

NASA Astrophysics Data System (ADS)

Raup, B. H.; Racoviteanu, A.; Khalsa, S. S.; Armstrong, R.

2008-12-01

GLIMS (Global Land Ice Measurements from Space) is an international initiative to map the world's glaciers and to build a GIS database that is usable via the World Wide Web. The GLIMS programme includes 70 institutions, and 25 Regional Centers (RCs), who analyze satellite imagery to map glaciers in their regions of expertise. The analysis results are collected at the National Snow and Ice Data Center (NSIDC) and ingested into the GLIMS Glacier Database. The database contains approximately 80 000 glacier outlines, half the estimated total on Earth. In addition, the database contains metadata on approximately 200 000 ASTER images acquired over glacierized terrain. Glacier data and the ASTER metadata can be viewed and searched via interactive maps at http://glims.org/. As glacier mapping with GLIMS has progressed, various hurdles have arisen that have required solutions. For example, the GLIMS community has formulated definitions for how to delineate glaciers with different complicated morphologies and how to deal with debris cover. Experiments have been carried out to assess the consistency of the database, and protocols have been defined for the RCs to follow in their mapping. Hurdles still remain. In June 2008, a workshop was convened in Boulder, Colorado to address issues such as mapping debris-covered glaciers, mapping ice divides, and performing change analysis using two different glacier inventories. This contribution summarizes the status of the GLIMS Glacier Database and steps taken to ensure high data quality.

GERLUMPH DATA RELEASE 1: HIGH-RESOLUTION COSMOLOGICAL MICROLENSING MAGNIFICATION MAPS AND eResearch TOOLS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Vernardos, G.; Fluke, C. J.; Croton, D.

2014-03-01

As synoptic all-sky surveys begin to discover new multiply lensed quasars, the flow of data will enable statistical cosmological microlensing studies of sufficient size to constrain quasar accretion disk and supermassive black hole properties. In preparation for this new era, we are undertaking the GPU-Enabled, High Resolution cosmological MicroLensing parameter survey (GERLUMPH). We present here the GERLUMPH Data Release 1, which consists of 12,342 high resolution cosmological microlensing magnification maps and provides the first uniform coverage of the convergence, shear, and smooth matter fraction parameter space. We use these maps to perform a comprehensive numerical investigation of the mass-sheet degeneracy,more » finding excellent agreement with its predictions. We study the effect of smooth matter on microlensing induced magnification fluctuations. In particular, in the minima and saddle-point regions, fluctuations are enhanced only along the critical line, while in the maxima region they are always enhanced for high smooth matter fractions (≈0.9). We describe our approach to data management, including the use of an SQL database with a Web interface for data access and online analysis, obviating the need for individuals to download large volumes of data. In combination with existing observational databases and online applications, the GERLUMPH archive represents a fundamental component of a new microlensing eResearch cloud. Our maps and tools are publicly available at http://gerlumph.swin.edu.au/.« less

Volcanic observation data and simulation database at NIED, Japan (Invited)

NASA Astrophysics Data System (ADS)

Fujita, E.; Ueda, H.; Kozono, T.

2009-12-01

NIED (Nat’l Res. Inst. for Earth Sci. & Disast. Prev.) has a project to develop two volcanic database systems: (1) volcanic observation database; (2) volcanic simulation database. The volcanic observation database is the data archive center obtained by the geophysical observation networks at Mt. Fuji, Miyake, Izu-Oshima, Iwo-jima and Nasu volcanoes, central Japan. The data consist of seismic (both high-sensitivity and broadband), ground deformation (tiltmeter, GPS) and those from other sensors (e.g., rain gauge, gravimeter, magnetometer, pressure gauge.) These data is originally stored in “WIN format,” the Japanese standard format, which is also at the Hi-net (High sensitivity seismic network Japan, http://www.hinet.bosai.go.jp/). NIED joins to WOVOdat and we have prepared to upload our data, via XML format. Our concept of the XML format is 1)a common format for intermediate files to upload into the WOVOdat DB, 2) for data files downloaded from the WOVOdat DB, 3) for data exchanges between observatories without the WOVOdat DB, 4) for common data files in each observatory, 5) for data communications between systems and softwares and 6)a for softwares. NIED is now preparing for (2) the volcanic simulation database. The objective of this project is to support to develop a “real-time” hazard map, i.e., the system which is effective to evaluate volcanic hazard in case of emergency, including the up-to-date conditions. Our system will include lava flow simulation (LavaSIM) and pyroclastic flow simulation (grvcrt). The database will keep many cases of assumed simulations and we can pick up the most probable case as the first evaluation in case the eruption started. The final goals of the both database will realize the volcanic eruption prediction and forecasting in real time by the combination of monitoring data and numerical simulations.

The State Geologic Map Compilation (SGMC) geodatabase of the conterminous United States

USGS Publications Warehouse

Horton, John D.; San Juan, Carma A.; Stoeser, Douglas B.

2017-06-30

The State Geologic Map Compilation (SGMC) geodatabase of the conterminous United States (https://doi. org/10.5066/F7WH2N65) represents a seamless, spatial database of 48 State geologic maps that range from 1:50,000 to 1:1,000,000 scale. A national digital geologic map database is essential in interpreting other datasets that support numerous types of national-scale studies and assessments, such as those that provide geochemistry, remote sensing, or geophysical data. The SGMC is a compilation of the individual U.S. Geological Survey releases of the Preliminary Integrated Geologic Map Databases for the United States. The SGMC geodatabase also contains updated data for seven States and seven entirely new State geologic maps that have been added since the preliminary databases were published. Numerous errors have been corrected and enhancements added to the preliminary datasets using thorough quality assurance/quality control procedures. The SGMC is not a truly integrated geologic map database because geologic units have not been reconciled across State boundaries. However, the geologic data contained in each State geologic map have been standardized to allow spatial analyses of lithology, age, and stratigraphy at a national scale.

Database for the Geologic Map of the Skykomish River 30-Minute by 60-Minute Quadrangle, Washington (I-1963)

USGS Publications Warehouse

Tabor, R.W.; Frizzell, V.A.; Booth, D.B.; Waitt, R.B.; Whetten, J.T.; Zartman, R.E.

2006-01-01

This digital map database has been prepared from the published geologic map of the Skykomish River 30- by 60-minute quadrangle by the senior author. Together with the accompanying text files as PDF, it provides information on the geologic structure and stratigraphy of the area covered. The database delineates map units that are identified by general age and lithology following the stratigraphic nomenclature of the U.S. Geological Survey. The authors mapped most of the bedrock geology at 1:100,000 scale, but compiled Quaternary units at 1:24,000 scale. The Quaternary contacts and structural data have been much simplified for the 1:100,000-scale map and database. The spatial resolution (scale) of the database is 1:100,000 or smaller. From the eastern-most edges of suburban Seattle, the Skykomish River quadrangle stretches east across the low rolling hills and broad river valleys of the Puget Lowland, across the forested foothills of the North Cascades, and across high meadowlands to the bare rock peaks of the Cascade crest. The Straight Creek Fault, a major Pacific Northwest structure which almost bisects the quadrangle, mostly separates unmetamorphosed and low-grade metamorphic Paleozoic and Mesozoic oceanic rocks on the west from medium- to high-grade metamorphic rocks on the east. Within the quadrangle the lower grade rocks are mostly Mesozoic melange units. To the east, the higher-grade terrane is mostly the Chiwaukum Schist and related gneisses of the Nason terrane and invading mid-Cretaceous stitching plutons. The Early Cretaceous Easton Metamorphic Suite crops out on both sides of the Straight Creek fault and records it's dextral displacement. On the south margin of the quadrangle, the fault separates the lower Eocene Swauk Formation on the east from the upper Eocene and Oligocene(?) Naches Formation and, farther north, its correlative Barlow Pass Volcanics the west. Stratigraphically equivalent rocks of the Puget Group crop out farther to the west. Rocks of the Cascade magmatic arc are mostly represented by Miocene and Oligocene plutons, including the Grotto, Snoqualmie, and Index batholiths. Alpine river valleys in the quadrangle record multiple advances and retreats of alpine glaciers. Multiple advances of the Cordilleran ice sheet, originating in the mountains of British Columbia, Canada, have left an even more complex sequence of outwash and till along the western mountain front, up these same alpine river valleys, and over the Puget Lowland. This database and accompanying plot files depict the distribution of geologic materials and structures at a regional (1:100,000) scale. The report is intended to provide geologic information for the regional study of materials properties, earthquake shaking, landslide potential, mineral hazards, seismic velocity, and earthquake faults. In addition, the report contains new information and interpretations about the regional geologic history and framework. However, the regional scale of this report does not provide sufficient detail for site development purposes.

Spatial Digital Database for the Geologic Map of Oregon

USGS Publications Warehouse

Walker, George W.; MacLeod, Norman S.; Miller, Robert J.; Raines, Gary L.; Connors, Katherine A.

2003-01-01

Introduction This report describes and makes available a geologic digital spatial database (orgeo) representing the geologic map of Oregon (Walker and MacLeod, 1991). The original paper publication was printed as a single map sheet at a scale of 1:500,000, accompanied by a second sheet containing map unit descriptions and ancillary data. A digital version of the Walker and MacLeod (1991) map was included in Raines and others (1996). The dataset provided by this open-file report supersedes the earlier published digital version (Raines and others, 1996). This digital spatial database is one of many being created by the U.S. Geological Survey as an ongoing effort to provide geologic information for use in spatial analysis in a geographic information system (GIS). This database can be queried in many ways to produce a variety of geologic maps. This database is not meant to be used or displayed at any scale larger than 1:500,000 (for example, 1:100,000). This report describes the methods used to convert the geologic map data into a digital format, describes the ArcInfo GIS file structures and relationships, and explains how to download the digital files from the U.S. Geological Survey public access World Wide Web site on the Internet. Scanned images of the printed map (Walker and MacLeod, 1991), their correlation of map units, and their explanation of map symbols are also available for download.

Geologic database for digital geology of California, Nevada, and Utah: an application of the North American Data Model

USGS Publications Warehouse

Bedford, David R.; Ludington, Steve; Nutt, Constance M.; Stone, Paul A.; Miller, David M.; Miller, Robert J.; Wagner, David L.; Saucedo, George J.

2003-01-01

The USGS is creating an integrated national database for digital state geologic maps that includes stratigraphic, age, and lithologic information. The majority of the conterminous 48 states have digital geologic base maps available, often at scales of 1:500,000. This product is a prototype, and is intended to demonstrate the types of derivative maps that will be possible with the national integrated database. This database permits the creation of a number of types of maps via simple or sophisticated queries, maps that may be useful in a number of areas, including mineral-resource assessment, environmental assessment, and regional tectonic evolution. This database is distributed with three main parts: a Microsoft Access 2000 database containing geologic map attribute data, an Arc/Info (Environmental Systems Research Institute, Redlands, California) Export format file containing points representing designation of stratigraphic regions for the Geologic Map of Utah, and an ArcView 3.2 (Environmental Systems Research Institute, Redlands, California) project containing scripts and dialogs for performing a series of generalization and mineral resource queries. IMPORTANT NOTE: Spatial data for the respective stage geologic maps is not distributed with this report. The digital state geologic maps for the states involved in this report are separate products, and two of them are produced by individual state agencies, which may be legally and/or financially responsible for this data. However, the spatial datasets for maps discussed in this report are available to the public. Questions regarding the distribution, sale, and use of individual state geologic maps should be sent to the respective state agency. We do provide suggestions for obtaining and formatting the spatial data to make it compatible with data in this report. See section ‘Obtaining and Formatting Spatial Data’ in the PDF version of the report.

Creating a literature database of low-calorie sweeteners and health studies: evidence mapping.

PubMed

Wang, Ding Ding; Shams-White, Marissa; Bright, Oliver John M; Parrott, J Scott; Chung, Mei

2016-01-05

Evidence mapping is an emerging tool used to systematically identify, organize and summarize the quantity and focus of scientific evidence on a broad topic, but there are currently no methodological standards. Using the topic of low-calorie sweeteners (LCS) and selected health outcomes, we describe the process of creating an evidence-map database and demonstrate several example descriptive analyses using this database. The process of creating an evidence-map database is described in detail. The steps include: developing a comprehensive literature search strategy, establishing study eligibility criteria and a systematic study selection process, extracting data, developing outcome groups with input from expert stakeholders and tabulating data using descriptive analyses. The database was uploaded onto SRDR™ (Systematic Review Data Repository), an open public data repository. Our final LCS evidence-map database included 225 studies, of which 208 were interventional studies and 17 were cohort studies. An example bubble plot was produced to display the evidence-map data and visualize research gaps according to four parameters: comparison types, population baseline health status, outcome groups, and study sample size. This plot indicated a lack of studies assessing appetite and dietary intake related outcomes using LCS with a sugar intake comparison in people with diabetes. Evidence mapping is an important tool for the contextualization of in-depth systematic reviews within broader literature and identifies gaps in the evidence base, which can be used to inform future research. An open evidence-map database has the potential to promote knowledge translation from nutrition science to policy.

77 FR 29749 - Twelfth Meeting: RTCA Special Committee 217, Joint with EUROCAE WG-44, Terrain and Airport...

Federal Register 2010, 2011, 2012, 2013, 2014

2012-05-18

... Committee 217, Joint with EUROCAE WG-44, Terrain and Airport Mapping Databases AGENCY: Federal Aviation... 217, Joint with EUROCAE WG-44, Terrain and Airport Mapping Databases. SUMMARY: The FAA is issuing this..., Terrain and Airport Mapping Databases. DATES: The meeting will be held June 18-22, 2012, from 9:00 a.m.-5...

Standardization of Terminology in Laboratory Medicine II

PubMed Central

Lee, Kap No; Yoon, Jong-Hyun; Min, Won Ki; Lim, Hwan Sub; Song, Junghan; Chae, Seok Lae; Jang, Seongsoo; Ki, Chang-Seok; Bae, Sook Young; Kim, Jang Su; Kwon, Jung-Ah; Lee, Chang Kyu

2008-01-01

Standardization of medical terminology is essential in data transmission between health care institutes and in maximizing the benefits of information technology. The purpose of this study was to standardize medical terms for laboratory observations. During the second year of the study, a standard database of concept names for laboratory terms that covered those used in tertiary health care institutes and reference laboratories was developed. The laboratory terms in the Logical Observation Identifier Names and Codes (LOINC) database were adopted and matched with the electronic data interchange (EDI) codes in Korea. A public hearing and a workshop for clinical pathologists were held to collect the opinions of experts. The Korean standard laboratory terminology database containing six axial concept names, components, property, time aspect, system (specimen), scale type, and method type, was established for 29,340 test observations. Short names and mapping tables for EDI codes and UMLS were added. Synonym tables were prepared to help match concept names to common terms used in the fields. We herein described the Korean standard laboratory terminology database for test names, result description terms, and result units encompassing most of the laboratory tests in Korea. PMID:18756062

[Standardization of terminology in laboratory medicine I].

PubMed

Yoon, Soo Young; Yoon, Jong Hyun; Min, Won Ki; Lim, Hwan Sub; Song, Junghan; Chae, Seok Lae; Lee, Chang Kyu; Kwon, Jung Ah; Lee, Kap No

2007-04-01

Standardization of medical terminology is essential for data transmission between health-care institutions or clinical laboratories and for maximizing the benefits of information technology. Purpose of our study was to standardize the medical terms used in the clinical laboratory, such as test names, units, terms used in result descriptions, etc. During the first year of the study, we developed a standard database of concept names for laboratory terms, which covered the terms used in government health care centers, their branch offices, and primary health care units. Laboratory terms were collected from the electronic data interchange (EDI) codes from National Health Insurance Corporation (NHIC), Logical Observation Identifier Names and Codes (LOINC) database, community health centers and their branch offices, and clinical laboratories of representative university medical centers. For standard expression, we referred to the English-Korean/ Korean-English medical dictionary of Korean Medical Association and the rules for foreign language translation. Programs for mapping between LOINC DB and EDI code and for translating English to Korean were developed. A Korean standard laboratory terminology database containing six axial concept names such as components, property, time aspect, system (specimen), scale type, and method type was established for 7,508 test observations. Short names and a mapping table for EDI codes and Unified Medical Language System (UMLS) were added. Synonym tables for concept names, words used in the database, and six axial terms were prepared to make it easier to find the standard terminology with common terms used in the field of laboratory medicine. Here we report for the first time a Korean standard laboratory terminology database for test names, result description terms, result units covering most laboratory tests in primary healthcare centers.

Preliminary surficial geologic map of the Newberry Springs 30' x 60' quadrangle, California

USGS Publications Warehouse

Phelps, G.A.; Bedford, D.R.; Lidke, D.J.; Miller, D.M.; Schmidt, K.M.

2012-01-01

The Newberry Springs 30' x 60' quadrangle is located in the central Mojave Desert of southern California. It is split approximately into northern and southern halves by I-40, with the city of Barstow at its western edge and the town of Ludlow near its eastern edge. The map area spans lat 34°30 to 35° N. to long -116 °to -117° W. and covers over 1,000 km2. We integrate the results of surficial geologic mapping conducted during 2002-2005 with compilations of previous surficial mapping and bedrock geologic mapping. Quaternary units are subdivided in detail on the map to distinguish variations in age, process of formation, pedogenesis, lithology, and spatial interdependency, whereas pre-Quaternary bedrock units are grouped into generalized assemblages that emphasize their attributes as hillslope-forming materials and sources of parent material for the Quaternary units. The spatial information in this publication is presented in two forms: a spatial database and a geologic map. The geologic map is a view (the display of an extracted subset of the database at a given time) of the spatial database; it highlights key aspects of the database and necessarily does not show all of the data contained therein. The database contains detailed information about Quaternary geologic unit composition, authorship, and notes regarding geologic units, faults, contacts, and local vegetation. The amount of information contained in the database is too large to show on a single map, so a restricted subset of the information was chosen to summarize the overall nature of the geology. Refer to the database for additional information. Accompanying the spatial data are the map documentation and spatial metadata. The map documentation (this document) describes the geologic setting and history of the Newberry Springs map sheet, summarizes the age and physical character of each map unit, and describes principal faults and folds. The Federal Geographic Data Committee (FGDC) compliant metadata provides detailed information about the digital files and file structure of the spatial data.

Geologic map of Yosemite National Park and vicinity, California

USGS Publications Warehouse

Huber, N.K.; Bateman, P.C.; Wahrhaftig, Clyde

1989-01-01

This digital map database represents the general distribution of bedrock and surficial deposits of the Yosemite National Park vicinity. It was produced directly from the file used to create the print version in 1989. The Yosemite National Park region is comprised of portions of 15 7.5 minute quadrangles. The original publication of the map in 1989 included the map, described map units and provided correlations, as well as a geologic summary and references, all on the same sheet. The database delineates map units that are identified by general age and lithology following the stratigraphic nomenclature of the U.S. Geological Survey. The scale of the source maps limits the spatial resolution (scale) of the database to 1:125,000 or smaller.

Digital release of the Alaska Quaternary fault and fold database

NASA Astrophysics Data System (ADS)

Koehler, R. D.; Farrell, R.; Burns, P.; Combellick, R. A.; Weakland, J. R.

2011-12-01

The Alaska Division of Geological & Geophysical Surveys (DGGS) has designed a Quaternary fault and fold database for Alaska in conformance with standards defined by the U.S. Geological Survey for the National Quaternary fault and fold database. Alaska is the most seismically active region of the United States, however little information exists on the location, style of deformation, and slip rates of Quaternary faults. Thus, to provide an accurate, user-friendly, reference-based fault inventory to the public, we are producing a digital GIS shapefile of Quaternary fault traces and compiling summary information on each fault. Here, we present relevant information pertaining to the digital GIS shape file and online access and availability of the Alaska database. This database will be useful for engineering geologic studies, geologic, geodetic, and seismic research, and policy planning. The data will also contribute to the fault source database being constructed by the Global Earthquake Model (GEM), Faulted Earth project, which is developing tools to better assess earthquake risk. We derived the initial list of Quaternary active structures from The Neotectonic Map of Alaska (Plafker et al., 1994) and supplemented it with more recent data where available. Due to the limited level of knowledge on Quaternary faults in Alaska, pre-Quaternary fault traces from the Plafker map are shown as a layer in our digital database so users may view a more accurate distribution of mapped faults and to suggest the possibility that some older traces may be active yet un-studied. The database will be updated as new information is developed. We selected each fault by reviewing the literature and georegistered the faults from 1:250,000-scale paper maps contained in 1970's vintage and earlier bedrock maps. However, paper map scales range from 1:20,000 to 1:500,000. Fault parameters in our GIS fault attribute tables include fault name, age, slip rate, slip sense, dip direction, fault line type (i.e., well constrained, moderately constrained, or inferred), and mapped scale. Each fault is assigned a three-integer CODE, based upon age, slip rate, and how well the fault is located. This CODE dictates the line-type for the GIS files. To host the database, we are developing an interactive web-map application with ArcGIS for Server and the ArcGIS API for JavaScript from Environmental Systems Research Institute, Inc. (Esri). The web-map application will present the database through a visible scale range with each fault displayed at the resolution of the original map. Application functionality includes: search by name or location, identification of fault by manual selection, and choice of base map. Base map options include topographic, satellite imagery, and digital elevation maps available from ArcGIS on-line. We anticipate that the database will be publically accessible from a portal embedded on the DGGS website by the end of 2011.

National Map Data Base On Landslide Prerequisites In Clay and Silt Areas - Development of Prototype

NASA Astrophysics Data System (ADS)

Viberg, Leif

Swedish geotechnical institute, SGI, has in co-operation with Swedish geologic survey, Lantmateriet (land surveying) and Swedish Rescue Service developed a theme database on landslide prerequisites in clay and silt areas. The work is carried out on commission of the Swedish government. A report with suggestions for production of the database has been delivered to the government. The database is a prototype, which has been tested in an area in northern Sweden. Recommended presentation map scale is about 1:50 000. Distribution of the database via Internet is discussed. The aim of the database is to use it as a modern planning tool in combination with other databases, e g databases on flooding prognoses. The main use is supposed to be in early planning stages, e g for new building and infrastructure development and for risk analyses. The database can also be used in more acute cases, e g for risk analyses and rescue operations in connection with flooding over large areas. Users are supposed to be municipal and county planners and rescue services, infrastructure planners, consultants and assurance companies. The database is constructed by combination of two existing databases: Elevation data and soil map data. The investigation area is divided into three zones with different stability criteria: 1. Clay and silt in sloping ground or adjoining water. 2. Clay and silt in flat ground. 3. Rock and other soils than clay and silt. The geometrical and soil criteria for the zones are specified in an algoritm, that will do the job to sort out the different zones. The algoritm is thereby using data from the elevation and soil databases. The investigation area is divided into cells (raster format) with 5 x 5 m side length. Different algoritms had to be developed before reasonable calculation time was reached. The theme may be presented on screen or as a map plot. A prototype map has been produced for the test area. A description is accompanying the map. The database is suggested to be produced in landslide prone areas in Sweden and approximately 200-300 map sheets (25 x 25 km) are required.

A simple method for serving Web hypermaps with dynamic database drill-down

PubMed Central

Boulos, Maged N Kamel; Roudsari, Abdul V; Carson, Ewart R

2002-01-01

Background HealthCyberMap aims at mapping parts of health information cyberspace in novel ways to deliver a semantically superior user experience. This is achieved through "intelligent" categorisation and interactive hypermedia visualisation of health resources using metadata, clinical codes and GIS. HealthCyberMap is an ArcView 3.1 project. WebView, the Internet extension to ArcView, publishes HealthCyberMap ArcView Views as Web client-side imagemaps. The basic WebView set-up does not support any GIS database connection, and published Web maps become disconnected from the original project. A dedicated Internet map server would be the best way to serve HealthCyberMap database-driven interactive Web maps, but is an expensive and complex solution to acquire, run and maintain. This paper describes HealthCyberMap simple, low-cost method for "patching" WebView to serve hypermaps with dynamic database drill-down functionality on the Web. Results The proposed solution is currently used for publishing HealthCyberMap GIS-generated navigational information maps on the Web while maintaining their links with the underlying resource metadata base. Conclusion The authors believe their map serving approach as adopted in HealthCyberMap has been very successful, especially in cases when only map attribute data change without a corresponding effect on map appearance. It should be also possible to use the same solution to publish other interactive GIS-driven maps on the Web, e.g., maps of real world health problems. PMID:12437788

Error and Uncertainty in the Accuracy Assessment of Land Cover Maps

NASA Astrophysics Data System (ADS)

Sarmento, Pedro Alexandre Reis

Traditionally the accuracy assessment of land cover maps is performed through the comparison of these maps with a reference database, which is intended to represent the "real" land cover, being this comparison reported with the thematic accuracy measures through confusion matrixes. Although, these reference databases are also a representation of reality, containing errors due to the human uncertainty in the assignment of the land cover class that best characterizes a certain area, causing bias in the thematic accuracy measures that are reported to the end users of these maps. The main goal of this dissertation is to develop a methodology that allows the integration of human uncertainty present in reference databases in the accuracy assessment of land cover maps, and analyse the impacts that uncertainty may have in the thematic accuracy measures reported to the end users of land cover maps. The utility of the inclusion of human uncertainty in the accuracy assessment of land cover maps is investigated. Specifically we studied the utility of fuzzy sets theory, more precisely of fuzzy arithmetic, for a better understanding of human uncertainty associated to the elaboration of reference databases, and their impacts in the thematic accuracy measures that are derived from confusion matrixes. For this purpose linguistic values transformed in fuzzy intervals that address the uncertainty in the elaboration of reference databases were used to compute fuzzy confusion matrixes. The proposed methodology is illustrated using a case study in which the accuracy assessment of a land cover map for Continental Portugal derived from Medium Resolution Imaging Spectrometer (MERIS) is made. The obtained results demonstrate that the inclusion of human uncertainty in reference databases provides much more information about the quality of land cover maps, when compared with the traditional approach of accuracy assessment of land cover maps. None

Analysis and preliminary design of Kunming land use and planning management information system

NASA Astrophysics Data System (ADS)

Li, Li; Chen, Zhenjie

2007-06-01

This article analyzes Kunming land use planning and management information system from the system building objectives and system building requirements aspects, nails down the system's users, functional requirements and construction requirements. On these bases, the three-tier system architecture based on C/S and B/S is defined: the user interface layer, the business logic layer and the data services layer. According to requirements for the construction of land use planning and management information database derived from standards of the Ministry of Land and Resources and the construction program of the Golden Land Project, this paper divides system databases into planning document database, planning implementation database, working map database and system maintenance database. In the design of the system interface, this paper uses various methods and data formats for data transmission and sharing between upper and lower levels. According to the system analysis results, main modules of the system are designed as follows: planning data management, the planning and annual plan preparation and control function, day-to-day planning management, planning revision management, decision-making support, thematic inquiry statistics, planning public participation and so on; besides that, the system realization technologies are discussed from the system operation mode, development platform and other aspects.

Semi-automatic feedback using concurrence between mixture vectors for general databases

NASA Astrophysics Data System (ADS)

Larabi, Mohamed-Chaker; Richard, Noel; Colot, Olivier; Fernandez-Maloigne, Christine

2001-12-01

This paper describes how a query system can exploit the basic knowledge by employing semi-automatic relevance feedback to refine queries and runtimes. For general databases, it is often useless to call complex attributes, because we have not sufficient information about images in the database. Moreover, these images can be topologically very different from one to each other and an attribute that is powerful for a database category may be very powerless for the other categories. The idea is to use very simple features, such as color histogram, correlograms, Color Coherence Vectors (CCV), to fill out the signature vector. Then, a number of mixture vectors is prepared depending on the number of very distinctive categories in the database. Knowing that a mixture vector is a vector containing the weight of each attribute that will be used to compute a similarity distance. We post a query in the database using successively all the mixture vectors defined previously. We retain then the N first images for each vector in order to make a mapping using the following information: Is image I present in several mixture vectors results? What is its rank in the results? These informations allow us to switch the system on an unsupervised relevance feedback or user's feedback (supervised feedback).

The Method of Multiple Spatial Planning Basic Map

NASA Astrophysics Data System (ADS)

Zhang, C.; Fang, C.

2018-04-01

The "Provincial Space Plan Pilot Program" issued in December 2016 pointed out that the existing space management and control information management platforms of various departments were integrated, and a spatial planning information management platform was established to integrate basic data, target indicators, space coordinates, and technical specifications. The planning and preparation will provide supportive decision support, digital monitoring and evaluation of the implementation of the plan, implementation of various types of investment projects and space management and control departments involved in military construction projects in parallel to approve and approve, and improve the efficiency of administrative approval. The space planning system should be set up to delimit the control limits for the development of production, life and ecological space, and the control of use is implemented. On the one hand, it is necessary to clarify the functional orientation between various kinds of planning space. On the other hand, it is necessary to achieve "multi-compliance" of various space planning. Multiple spatial planning intergration need unified and standard basic map(geographic database and technical specificaton) to division of urban, agricultural, ecological three types of space and provide technical support for the refinement of the space control zoning for the relevant planning. The article analysis the main space datum, the land use classification standards, base map planning, planning basic platform main technical problems. Based on the geographic conditions, the results of the census preparation of spatial planning map, and Heilongjiang, Hainan many rules combined with a pilot application.

Plant Genome Resources at the National Center for Biotechnology Information

PubMed Central

Wheeler, David L.; Smith-White, Brian; Chetvernin, Vyacheslav; Resenchuk, Sergei; Dombrowski, Susan M.; Pechous, Steven W.; Tatusova, Tatiana; Ostell, James

2005-01-01

The National Center for Biotechnology Information (NCBI) integrates data from more than 20 biological databases through a flexible search and retrieval system called Entrez. A core Entrez database, Entrez Nucleotide, includes GenBank and is tightly linked to the NCBI Taxonomy database, the Entrez Protein database, and the scientific literature in PubMed. A suite of more specialized databases for genomes, genes, gene families, gene expression, gene variation, and protein domains dovetails with the core databases to make Entrez a powerful system for genomic research. Linked to the full range of Entrez databases is the NCBI Map Viewer, which displays aligned genetic, physical, and sequence maps for eukaryotic genomes including those of many plants. A specialized plant query page allow maps from all plant genomes covered by the Map Viewer to be searched in tandem to produce a display of aligned maps from several species. PlantBLAST searches against the sequences shown in the Map Viewer allow BLAST alignments to be viewed within a genomic context. In addition, precomputed sequence similarities, such as those for proteins offered by BLAST Link, enable fluid navigation from unannotated to annotated sequences, quickening the pace of discovery. NCBI Web pages for plants, such as Plant Genome Central, complete the system by providing centralized access to NCBI's genomic resources as well as links to organism-specific Web pages beyond NCBI. PMID:16010002

Surficial geologic map of the Amboy 30' x 60' quadrangle, San Bernardino County, California

USGS Publications Warehouse

Bedford, David R.; Miller, David M.; Phelps, Geoffrey A.

2010-01-01

The surficial geologic map of the Amboy 30' x 60' quadrangle presents characteristics of surficial materials for an area of approximately 5,000 km2 in the eastern Mojave Desert of southern California. This map consists of new surficial mapping conducted between 2000 and 2007, as well as compilations from previous surficial mapping. Surficial geologic units are mapped and described based on depositional process and age categories that reflect the mode of deposition, pedogenic effects following deposition, and, where appropriate, the lithologic nature of the material. Many physical properties were noted and measured during the geologic mapping. This information was used to classify surficial deposits and to understand their ecological importance. We focus on physical properties that drive hydrologic, biologic, and physical processes such as particle-size distribution (PSD) and bulk density. The database contains point data representing locations of samples for both laboratory determined physical properties and semiquantitative field-based information in the database. We include the locations of all field observations and note the type of information collected in the field to help assist in assessing the quality of the mapping. The publication is separated into three parts: documentation, spatial data, and printable map graphics of the database. Documentation includes this pamphlet, which provides a discussion of the surficial geology and units and the map. Spatial data are distributed as ArcGIS Geodatabase in Microsoft Access format and are accompanied by a readme file, which describes the database contents, and FGDC metadata for the spatial map information. Map graphics files are distributed as Postscript and Adobe Portable Document Format (PDF) files that provide a view of the spatial database at the mapped scale.

Active Faults and Seismic Sources of the Middle East Region: Earthquake Model of the Middle East (EMME) Project

NASA Astrophysics Data System (ADS)

Gulen, L.; EMME WP2 Team*

2011-12-01

The Earthquake Model of the Middle East (EMME) Project is a regional project of the GEM (Global Earthquake Model) project (http://www.emme-gem.org/). The EMME project covers Turkey, Georgia, Armenia, Azerbaijan, Syria, Lebanon, Jordan, Iran, Pakistan, and Afghanistan. Both EMME and SHARE projects overlap and Turkey becomes a bridge connecting the two projects. The Middle East region is tectonically and seismically very active part of the Alpine-Himalayan orogenic belt. Many major earthquakes have occurred in this region over the years causing casualties in the millions. The EMME project consists of three main modules: hazard, risk, and socio-economic modules. The EMME project uses PSHA approach for earthquake hazard and the existing source models have been revised or modified by the incorporation of newly acquired data. The most distinguishing aspect of the EMME project from the previous ones is its dynamic character. This very important characteristic is accomplished by the design of a flexible and scalable database that permits continuous update, refinement, and analysis. An up-to-date earthquake catalog of the Middle East region has been prepared and declustered by the WP1 team. EMME WP2 team has prepared a digital active fault map of the Middle East region in ArcGIS format. We have constructed a database of fault parameters for active faults that are capable of generating earthquakes above a threshold magnitude of Mw≥5.5. The EMME project database includes information on the geometry and rates of movement of faults in a "Fault Section Database", which contains 36 entries for each fault section. The "Fault Section" concept has a physical significance, in that if one or more fault parameters change, a new fault section is defined along a fault zone. So far 6,991 Fault Sections have been defined and 83,402 km of faults are fully parameterized in the Middle East region. A separate "Paleo-Sites Database" includes information on the timing and amounts of fault displacement for major fault zones. A digital reference library, that includes the pdf files of relevant papers, reports and maps, is also prepared. A logic tree approach is utilized to encompass different interpretations for the areas where there is no consensus. Finally seismic source zones in the Middle East region have been delineated using all available data. *EMME Project WP2 Team: Levent Gülen, Murat Utkucu, M. Dinçer Köksal, Hilal Yalçin, Yigit Ince, Mine Demircioglu, Shota Adamia, Nino Sadradze, Aleksandre Gvencadze, Arkadi Karakhanyan, Mher Avanesyan, Tahir Mammadli, Gurban Yetirmishli, Arif Axundov, Khaled Hessami, M. Asif Khan, M. Sayab.

Progress Report for Annex II--Assessment of Solar Radiation Resources in Saudi Arabia 1993-1997

DOE Office of Scientific and Technical Information (OSTI.GOV)

Al-Amoudi, Anmed; Alawaji, Saleh H.; Cornwall, Chris

1999-08-20

In 1987, the United States Department of Energy (DOE) and the King Abdulaziz City for Science and Technology (KACST) signed a five-year Agreement for Cooperation in the Field of Renewable Energy Research and Development (R and D), which has been extended to 2000. Tasks include: (1) upgrade solar radiation measurements in Saudi Arabia; (2) assemble a database of concurrent solar radiation, satellite (METEOSAT), and meteorological data; (3) adapt NREL models and other software for Saudi Arabia; (4) develop procedures, algorithms, and software to estimate solar irradiance; and (5) prepare a grid of solar radiation data for preparing maps and atlasesmore » and estimating solar radiation resources and solar energy system performances at locations in Saudi Arabia.« less

Geologic map of the Devore 7.5' quadrangle, San Bernardino County, California

USGS Publications Warehouse

Morton, Douglas M.; Matti, Jonathan C.

2001-01-01

This Open-File Report contains a digital geologic map database of the Devore 7.5' quadrangle, San Bernardino County, California, that includes: 1. ARC/INFO (Environmental Systems Research Institute) version 7.2.1 coverages of the various components of the geologic map 2. A PostScript (.ps) file to plot the geologic map on a topographic base, containing a Correlation of Map Units diagram, a Description of Map Units, an index map, and a regional structure map 3. Portable Document Format (.pdf) files of: a. This Readme; includes an Appendix, containing metadata details found in devre_met.txt b. The same graphic as plotted in 2 above. (Test plots from this .pdf do not produce 1:24,000-scale maps. Adobe Acrobat page-size settings control map scale.) The Correlation of Map Units and Description of Map Units are in the editorial format of USGS Miscellaneous Investigations Series maps (I-maps) but have not been edited to comply with I-map standards. Within the geologic-map data package, map units are identified by such standard geologic-map criteria as formation name, age, and lithology. Even though this is an author-prepared report, every attempt has been made to closely adhere to the stratigraphic nomenclature of the U.S. Geological Survey. Descriptions of units can be obtained by viewing or plotting the .pdf file (3b above) or plotting the postscript file (2 above). If roads in some areas, especially forest roads that parallel topographic contours, do not show well on plots of the geologic map, we recommend use of the USGS Devore 7.5’ topographic quadrangle in conjunction with the geologic map.

Land cover mapping of Greater Mesoamerica using MODIS data

USGS Publications Warehouse

Giri, Chandra; Jenkins, Clinton N.

2005-01-01

A new land cover database of Greater Mesoamerica has been prepared using moderate resolution imaging spectroradiometer (MODIS, 500 m resolution) satellite data. Daily surface reflectance MODIS data and a suite of ancillary data were used in preparing the database by employing a decision tree classification approach. The new land cover data are an improvement over traditional advanced very high resolution radiometer (AVHRR) based land cover data in terms of both spatial and thematic details. The dominant land cover type in Greater Mesoamerica is forest (39%), followed by shrubland (30%) and cropland (22%). Country analysis shows forest as the dominant land cover type in Belize (62%), Cost Rica (52%), Guatemala (53%), Honduras (56%), Nicaragua (53%), and Panama (48%), cropland as the dominant land cover type in El Salvador (60.5%), and shrubland as the dominant land cover type in Mexico (37%). A three-step approach was used to assess the quality of the classified land cover data: (i) qualitative assessment provided good insight in identifying and correcting gross errors; (ii) correlation analysis of MODIS- and Landsat-derived land cover data revealed strong positive association for forest (r2 = 0.88), shrubland (r2 = 0.75), and cropland (r2 = 0.97) but weak positive association for grassland (r2 = 0.26); and (iii) an error matrix generated using unseen training data provided an overall accuracy of 77.3% with a Kappa coefficient of 0.73608. Overall, MODIS 500 m data and the methodology used were found to be quite useful for broad-scale land cover mapping of Greater Mesoamerica.

GIS Methodic and New Database for Magmatic Rocks. Application for Atlantic Oceanic Magmatism.

NASA Astrophysics Data System (ADS)

Asavin, A. M.

2001-12-01

There are several geochemical Databases in INTERNET available now. There one of the main peculiarities of stored geochemical information is geographical coordinates of each samples in those Databases. As rule the software of this Database use spatial information only for users interface search procedures. In the other side, GIS-software (Geographical Information System software),for example ARC/INFO software which using for creation and analyzing special geological, geochemical and geophysical e-map, have been deeply involved with geographical coordinates for of samples. We join peculiarities GIS systems and relational geochemical Database from special software. Our geochemical information system created in Vernadsky Geological State Museum and institute of Geochemistry and Analytical Chemistry from Moscow. Now we tested system with data of geochemistry oceanic rock from Atlantic and Pacific oceans, about 10000 chemical analysis. GIS information content consist from e-map covers Wold Globes. Parts of these maps are Atlantic ocean covers gravica map (with grid 2''), oceanic bottom hot stream, altimeteric maps, seismic activity, tectonic map and geological map. Combination of this information content makes possible created new geochemical maps and combination of spatial analysis and numerical geochemical modeling of volcanic process in ocean segment. Now we tested information system on thick client technology. Interface between GIS system Arc/View and Database resides in special multiply SQL-queries sequence. The result of the above gueries were simple DBF-file with geographical coordinates. This file act at the instant of creation geochemical and other special e-map from oceanic region. We used more complex method for geophysical data. From ARC\\View we created grid cover for polygon spatial geophysical information.

Integration of Rs/gis for Surface Water Pollution Risk Modeling. Case Study: Al-Abrash Syrian Coastal Basin

NASA Astrophysics Data System (ADS)

Yaghi, Y.; Salim, H.

2017-09-01

Recently the topic of the quality of surface water (rivers - lakes) and the sea is an important topics at different levels. It is known that there are two major groups of pollutants: Point Source Pollution (PSP) and non-point Source pollution (NPSP). Historically most of the surface water pollution protection programs dealing with the first set of pollutants which comes from sewage pipes and factories drainage. With the growing need for current and future water security must stand on the current reality of the coastal rivers basin in terms of freshness and cleanliness and condition of water pollution. This research aims to assign the NPS pollutants that reach Al Abrash River and preparation of databases and producing of risk Pollution map for NPS pollutants in order to put the basin management plan to ensure the reduction of pollutants that reach the river. This research resulted of establishing of Databases of NPSP (Like pesticides and fertilizers) and producing of thematic maps for pollution severity and pollution risk based on the pollution models designed in GIS environment and utilizing from remote sensing data. Preliminary recommendations for managing these pollutants were put.

Visualizing the semantic content of large text databases using text maps

NASA Technical Reports Server (NTRS)

Combs, Nathan

1993-01-01

A methodology for generating text map representations of the semantic content of text databases is presented. Text maps provide a graphical metaphor for conceptualizing and visualizing the contents and data interrelationships of large text databases. Described are a set of experiments conducted against the TIPSTER corpora of Wall Street Journal articles. These experiments provide an introduction to current work in the representation and visualization of documents by way of their semantic content.

Spatial digital database of the geologic map of Catalina Core Complex and San Pedro Trough, Pima, Pinal, Gila, Graham, and Cochise counties, Arizona

USGS Publications Warehouse

Dickinson, William R.; digital database by Hirschberg, Douglas M.; Pitts, G. Stephen; Bolm, Karen S.

2002-01-01

The geologic map of Catalina Core Complex and San Pedro Trough by Dickinson (1992) was digitized for input into a geographic information system (GIS) by the U.S. Geological Survey staff and contractors in 2000-2001. This digital geospatial database is one of many being created by the U.S. Geological Survey as an ongoing effort to provide geologic information in a geographic information system (GIS) for use in spatial analysis. The resulting digital geologic map database data can be queried in many ways to produce a variety of geologic maps and derivative products. Digital base map data (topography, roads, towns, rivers, lakes, and so forth) are not included; they may be obtained from a variety of commercial and government sources. This database is not meant to be used or displayed at any scale larger than 1:125,000 (for example, 1:100,000 or 1:24,000). The digital geologic map plot files that are provided herein are representations of the database. The map area is located in southern Arizona. This report lists the geologic map units, the methods used to convert the geologic map data into a digital format, the ArcInfo GIS file structures and relationships, and explains how to download the digital files from the U.S. Geological Survey public access World Wide Web site on the Internet. The manuscript and digital data review by Lorre Moyer (USGS) is greatly appreciated.

Terrestrial Sediments of the Earth: Development of a Global Unconsolidated Sediments Map Database (GUM)

NASA Astrophysics Data System (ADS)

Börker, J.; Hartmann, J.; Amann, T.; Romero-Mujalli, G.

2018-04-01

Mapped unconsolidated sediments cover half of the global land surface. They are of considerable importance for many Earth surface processes like weathering, hydrological fluxes or biogeochemical cycles. Ignoring their characteristics or spatial extent may lead to misinterpretations in Earth System studies. Therefore, a new Global Unconsolidated Sediments Map database (GUM) was compiled, using regional maps specifically representing unconsolidated and quaternary sediments. The new GUM database provides insights into the regional distribution of unconsolidated sediments and their properties. The GUM comprises 911,551 polygons and describes not only sediment types and subtypes, but also parameters like grain size, mineralogy, age and thickness where available. Previous global lithological maps or databases lacked detail for reported unconsolidated sediment areas or missed large areas, and reported a global coverage of 25 to 30%, considering the ice-free land area. Here, alluvial sediments cover about 23% of the mapped total ice-free area, followed by aeolian sediments (˜21%), glacial sediments (˜20%), and colluvial sediments (˜16%). A specific focus during the creation of the database was on the distribution of loess deposits, since loess is highly reactive and relevant to understand geochemical cycles related to dust deposition and weathering processes. An additional layer compiling pyroclastic sediment is added, which merges consolidated and unconsolidated pyroclastic sediments. The compilation shows latitudinal abundances of sediment types related to climate of the past. The GUM database is available at the PANGAEA database (https://doi.org/10.1594/PANGAEA.884822).

Geologic map of the Fifteenmile Valley 7.5' quadrangle, San Bernardino County, California

USGS Publications Warehouse

Miller, F.K.; Matti, J.C.

2001-01-01

Open-File Report OF 01-132 contains a digital geologic map database of the Fifteenmile Valley 7.5’ quadrangle, San Bernardino County, California that includes: 1. ARC/INFO (Environmental Systems Research Institute, http://www.esri.com) version 7.2.1 coverages of the various elements of the geologic map. 2. A PostScript file to plot the geologic map on a topographic base, and containing a Correlation of Map Units diagram, a Description of Map Units, an index map, and a regional structure map. 3. Portable Document Format (.pdf) files of: a. This Readme; includes in Appendix I, data contained in fif_met.txt b. The same graphic as plotted in 2 above. (Test plots have not produced 1:24,000-scale map sheets. Adobe Acrobat pagesize setting influences map scale.) The Correlation of Map Units (CMU) and Description of Map Units (DMU) is in the editorial format of USGS Miscellaneous Investigations Series (I-series) maps. Within the geologic map data package, map units are identified by standard geologic map criteria such as formation-name, age, and lithology. Even though this is an author-prepared report, every attempt has been made to closely adhere to the stratigraphic nomenclature of the U. S. Geological Survey. Descriptions of units can be obtained by viewing or plotting the .pdf file (3b above) or plotting the postscript file (2 above). If roads in some areas, especially forest roads that parallel topographic contours, do not show well on plots of the geologic map, we recommend use of the USGS Fifteenmile Valley 7.5’ topographic quadrangle in conjunction with the geologic map.

Digital geomorphological landslide hazard mapping of the Alpago area, Italy

NASA Astrophysics Data System (ADS)

van Westen, Cees J.; Soeters, Rob; Sijmons, Koert

Large-scale geomorphological maps of mountainous areas are traditionally made using complex symbol-based legends. They can serve as excellent "geomorphological databases", from which an experienced geomorphologist can extract a large amount of information for hazard mapping. However, these maps are not designed to be used in combination with a GIS, due to their complex cartographic structure. In this paper, two methods are presented for digital geomorphological mapping at large scales using GIS and digital cartographic software. The methods are applied to an area with a complex geomorphological setting on the Borsoia catchment, located in the Alpago region, near Belluno in the Italian Alps. The GIS database set-up is presented with an overview of the data layers that have been generated and how they are interrelated. The GIS database was also converted into a paper map, using a digital cartographic package. The resulting largescale geomorphological hazard map is attached. The resulting GIS database and cartographic product can be used to analyse the hazard type and hazard degree for each polygon, and to find the reasons for the hazard classification.

Landscape features, standards, and semantics in U.S. national topographic mapping databases

USGS Publications Warehouse

Varanka, Dalia

2009-01-01

The objective of this paper is to examine the contrast between local, field-surveyed topographical representation and feature representation in digital, centralized databases and to clarify their ontological implications. The semantics of these two approaches are contrasted by examining the categorization of features by subject domains inherent to national topographic mapping. When comparing five USGS topographic mapping domain and feature lists, results indicate that multiple semantic meanings and ontology rules were applied to the initial digital database, but were lost as databases became more centralized at national scales, and common semantics were replaced by technological terms.

Concept Maps: A Tool to Prepare for High Fidelity Simulation in Nursing

ERIC Educational Resources Information Center

Daley, Barbara J.; Beman, Sarah Black; Morgan, Sarah; Kennedy, Linda; Sheriff, Mandy

2017-01-01

In this study, the use of concept mapping as a method to prepare for high fidelity simulated learning experiences was investigated. Fourth year baccalaureate nursing students were taught how to use concept maps as a way to prepare for high fidelity simulated nursing experiences. Students prepared concept maps for two simulated experiences…

Database for geologic maps of pyroclastic-flow and related deposits of the 1980 eruptions of Mount St. Helens, Washington

USGS Publications Warehouse

Furze, Andrew J.; Bard, Joseph A.; Robinson, Joel; Ramsey, David W.; Kuntz, Mel A.; Rowley, Peter D.; MacLeod, Norman S.

2017-10-31

This publication releases digital versions of the geologic maps in U.S. Geological Survey Miscellaneous Investigations Map 1950 (USGS I-1950), “Geologic maps of pyroclastic-flow and related deposits of the 1980 eruptions of Mount St. Helens, Washington” (Kuntz, Rowley, and MacLeod, 1990) (https://pubs.er.usgs.gov/publication/i1950). The 1980 Mount St. Helens eruptions on May 18, May 25, June 12, July 22, August 7, and October 16–18 produced pyroclastic-flow and related deposits. The distribution and morphology of these deposits, as determined from extensive field studies and examination of vertical aerial photographs, are shown on four maps in I-1950 (maps A–D) on two map sheets. Map A shows the May 18, May 25, and June 12 deposits; map B shows the July 22 deposits; map C shows the August 7 deposits; and map D shows the October 16–18 deposits. No digital geospatial versions of the geologic data were made available at the time of publication of the original maps. This data release consists of attributed vector features, data tables, and the cropped and georeferenced scans from which the features were digitized, in order to enable visualization and analysis of these data in GIS software. This data release enables users to digitally re-create the maps and description of map units of USGS I-1950; map sheet 1 includes text sections (Introduction, Physiography of Mount St. Helens at the time of the 1980 eruptions, Processes of the 1980 eruptions, Deposits of the 1980 eruptions, Limitations of the maps, Preparation of the maps, and References cited) and associated tables and figures that are not included in this data release.

Preliminary Geologic Map of the Topanga 7.5' Quadrangle, Southern California: A Digital Database

USGS Publications Warehouse

Yerkes, R.F.; Campbell, R.H.

1995-01-01

INTRODUCTION This Open-File report is a digital geologic map database. This pamphlet serves to introduce and describe the digital data. There is no paper map included in the Open-File report. This digital map database is compiled from previously published sources combined with some new mapping and modifications in nomenclature. The geologic map database delineates map units that are identified by general age and lithology following the stratigraphic nomenclature of the U. S. Geological Survey. For detailed descriptions of the units, their stratigraphic relations and sources of geologic mapping consult Yerkes and Campbell (1994). More specific information about the units may be available in the original sources. The content and character of the database and methods of obtaining it are described herein. The geologic map database itself, consisting of three ARC coverages and one base layer, can be obtained over the Internet or by magnetic tape copy as described below. The processes of extracting the geologic map database from the tar file, and importing the ARC export coverages (procedure described herein), will result in the creation of an ARC workspace (directory) called 'topnga.' The database was compiled using ARC/INFO version 7.0.3, a commercial Geographic Information System (Environmental Systems Research Institute, Redlands, California), with version 3.0 of the menu interface ALACARTE (Fitzgibbon and Wentworth, 1991, Fitzgibbon, 1991, Wentworth and Fitzgibbon, 1991). It is stored in uncompressed ARC export format (ARC/INFO version 7.x) in a compressed UNIX tar (tape archive) file. The tar file was compressed with gzip, and may be uncompressed with gzip, which is available free of charge via the Internet from the gzip Home Page (http://w3.teaser.fr/~jlgailly/gzip). A tar utility is required to extract the database from the tar file. This utility is included in most UNIX systems, and can be obtained free of charge via the Internet from Internet Literacy's Common Internet File Formats Webpage http://www.matisse.net/files/formats.html). ARC/INFO export files (files with the .e00 extension) can be converted into ARC/INFO coverages in ARC/INFO (see below) and can be read by some other Geographic Information Systems, such as MapInfo via ArcLink and ESRI's ArcView (version 1.0 for Windows 3.1 to 3.11 is available for free from ESRI's web site: http://www.esri.com). 1. Different base layer - The original digital database included separates clipped out of the Los Angeles 1:100,000 sheet. This release includes a vectorized scan of a scale-stable negative of the Topanga 7.5 minute quadrangle. 2. Map projection - The files in the original release were in polyconic projection. The projection used in this release is state plane, which allows for the tiling of adjacent quadrangles. 3. File compression - The files in the original release were compressed with UNIX compression. The files in this release are compressed with gzip.

GDR (Genome Database for Rosaceae): integrated web-database for Rosaceae genomics and genetics data

PubMed Central

Jung, Sook; Staton, Margaret; Lee, Taein; Blenda, Anna; Svancara, Randall; Abbott, Albert; Main, Dorrie

2008-01-01

The Genome Database for Rosaceae (GDR) is a central repository of curated and integrated genetics and genomics data of Rosaceae, an economically important family which includes apple, cherry, peach, pear, raspberry, rose and strawberry. GDR contains annotated databases of all publicly available Rosaceae ESTs, the genetically anchored peach physical map, Rosaceae genetic maps and comprehensively annotated markers and traits. The ESTs are assembled to produce unigene sets of each genus and the entire Rosaceae. Other annotations include putative function, microsatellites, open reading frames, single nucleotide polymorphisms, gene ontology terms and anchored map position where applicable. Most of the published Rosaceae genetic maps can be viewed and compared through CMap, the comparative map viewer. The peach physical map can be viewed using WebFPC/WebChrom, and also through our integrated GDR map viewer, which serves as a portal to the combined genetic, transcriptome and physical mapping information. ESTs, BACs, markers and traits can be queried by various categories and the search result sites are linked to the mapping visualization tools. GDR also provides online analysis tools such as a batch BLAST/FASTA server for the GDR datasets, a sequence assembly server and microsatellite and primer detection tools. GDR is available at http://www.rosaceae.org. PMID:17932055

LMSD: LIPID MAPS structure database

PubMed Central

Sud, Manish; Fahy, Eoin; Cotter, Dawn; Brown, Alex; Dennis, Edward A.; Glass, Christopher K.; Merrill, Alfred H.; Murphy, Robert C.; Raetz, Christian R. H.; Russell, David W.; Subramaniam, Shankar

2007-01-01

The LIPID MAPS Structure Database (LMSD) is a relational database encompassing structures and annotations of biologically relevant lipids. Structures of lipids in the database come from four sources: (i) LIPID MAPS Consortium's core laboratories and partners; (ii) lipids identified by LIPID MAPS experiments; (iii) computationally generated structures for appropriate lipid classes; (iv) biologically relevant lipids manually curated from LIPID BANK, LIPIDAT and other public sources. All the lipid structures in LMSD are drawn in a consistent fashion. In addition to a classification-based retrieval of lipids, users can search LMSD using either text-based or structure-based search options. The text-based search implementation supports data retrieval by any combination of these data fields: LIPID MAPS ID, systematic or common name, mass, formula, category, main class, and subclass data fields. The structure-based search, in conjunction with optional data fields, provides the capability to perform a substructure search or exact match for the structure drawn by the user. Search results, in addition to structure and annotations, also include relevant links to external databases. The LMSD is publicly available at PMID:17098933

Database for the Geologic Map of the Summit Region of Kilauea Volcano, Hawaii

USGS Publications Warehouse

Dutton, Dillon R.; Ramsey, David W.; Bruggman, Peggy E.; Felger, Tracey J.; Lougee, Ellen; Margriter, Sandy; Showalter, Patrick; Neal, Christina A.; Lockwood, John P.

2007-01-01

INTRODUCTION The area covered by this map includes parts of four U.S. Geological Survey (USGS) 7.5' topographic quadrangles (Kilauea Crater, Volcano, Ka`u Desert, and Makaopuhi). It encompasses the summit, upper rift zones, and Koa`e Fault System of Kilauea Volcano and a part of the adjacent, southeast flank of Mauna Loa Volcano. The map is dominated by products of eruptions from Kilauea Volcano, the southernmost of the five volcanoes on the Island of Hawai`i and one of the world's most active volcanoes. At its summit (1,243 m) is Kilauea Crater, a 3 km-by-5 km collapse caldera that formed, possibly over several centuries, between about 200 and 500 years ago. Radiating away from the summit caldera are two linear zones of intrusion and eruption, the east and the southwest rift zones. Repeated subaerial eruptions from the summit and rift zones have built a gently sloping, elongate shield volcano covering approximately 1,500 km2. Much of the volcano lies under water: the east rift zone extends 110 km from the summit to a depth of more than 5,000 m below sea level; whereas, the southwest rift zone has a more limited submarine continuation. South of the summit caldera, mostly north-facing normal faults and open fractures of the Koa`e Fault System extend between the two rift zones. The Koa`e Fault System is interpreted as a tear-away structure that accommodates southward movement of Kilauea's flank in response to distension of the volcano perpendicular to the rift zones. This digital release contains all the information used to produce the geologic map published as USGS Geologic Investigations Series I-2759 (Neal and Lockwood, 2003). The main component of this digital release is a geologic map database prepared using ArcInfo GIS. This release also contains printable files for the geologic map and accompanying descriptive pamphlet from I-2759.

OriDB, the DNA replication origin database updated and extended.

PubMed

Siow, Cheuk C; Nieduszynska, Sian R; Müller, Carolin A; Nieduszynski, Conrad A

2012-01-01

OriDB (http://www.oridb.org/) is a database containing collated genome-wide mapping studies of confirmed and predicted replication origin sites. The original database collated and curated Saccharomyces cerevisiae origin mapping studies. Here, we report that the OriDB database and web site have been revamped to improve user accessibility to curated data sets, to greatly increase the number of curated origin mapping studies, and to include the collation of replication origin sites in the fission yeast Schizosaccharomyces pombe. The revised database structure underlies these improvements and will facilitate further expansion in the future. The updated OriDB for S. cerevisiae is available at http://cerevisiae.oridb.org/ and for S. pombe at http://pombe.oridb.org/.

Assessment and application of national environmental databases and mapping tools at the local level to two community case studies.

PubMed

Hammond, Davyda; Conlon, Kathryn; Barzyk, Timothy; Chahine, Teresa; Zartarian, Valerie; Schultz, Brad

2011-03-01

Communities are concerned over pollution levels and seek methods to systematically identify and prioritize the environmental stressors in their communities. Geographic information system (GIS) maps of environmental information can be useful tools for communities in their assessment of environmental-pollution-related risks. Databases and mapping tools that supply community-level estimates of ambient concentrations of hazardous pollutants, risk, and potential health impacts can provide relevant information for communities to understand, identify, and prioritize potential exposures and risk from multiple sources. An assessment of existing databases and mapping tools was conducted as part of this study to explore the utility of publicly available databases, and three of these databases were selected for use in a community-level GIS mapping application. Queried data from the U.S. EPA's National-Scale Air Toxics Assessment, Air Quality System, and National Emissions Inventory were mapped at the appropriate spatial and temporal resolutions for identifying risks of exposure to air pollutants in two communities. The maps combine monitored and model-simulated pollutant and health risk estimates, along with local survey results, to assist communities with the identification of potential exposure sources and pollution hot spots. Findings from this case study analysis will provide information to advance the development of new tools to assist communities with environmental risk assessments and hazard prioritization. © 2010 Society for Risk Analysis.

Policy Implications and Suggestions on Administrative Measures of Urban Flood

NASA Astrophysics Data System (ADS)

Lee, S. V.; Lee, M. J.; Lee, C.; Yoon, J. H.; Chae, S. H.

2017-12-01

The frequency and intensity of floods are increasing worldwide as recent climate change progresses gradually. Flood management should be policy-oriented in urban municipalities due to the characteristics of urban areas with a lot of damage. Therefore, the purpose of this study is to prepare a flood susceptibility map by using data mining model and make a policy suggestion on administrative measures of urban flood. Therefore, we constructed a spatial database by collecting relevant factors including the topography, geology, soil and land use data of the representative city, Seoul, the capital city of Korea. Flood susceptibility map was constructed by applying the data mining models of random forest and boosted tree model to input data and existing flooded area data in 2010. The susceptibility map has been validated using the 2011 flood area data which was not used for training. The predictor importance value of each factor to the results was calculated in this process. The distance from the water, DEM and geology showed a high predictor importance value which means to be a high priority for flood preparation policy. As a result of receiver operating characteristic (ROC), random forest model showed 78.78% and 79.18% accuracy of regression and classification and boosted tree model showed 77.55% and 77.26% accuracy of regression and classification, respectively. The results show that the flood susceptibility maps can be applied to flood prevention and management, and it also can help determine the priority areas for flood mitigation policy by providing useful information to policy makers.

Seismic Hazard Implication of the Seismotectonics of southern Africa

NASA Astrophysics Data System (ADS)

Midzi, Vunganai; Mulabisana, Thifelimbilu; Manzunzu, Brassnavy

2014-05-01

The work presented in this report / presentation was prepared as part of the requirements for the SIDA/IGCP Project 601 titled "Seismotectonics and Seismic Hazards in Africa" as well as part of the seismic source characterisation of the GEM-Africa Seismic hazard study. An effort was made to compile information necessary to prepare a seismotectonic map of Africa which can then be used in carrying out a seismic hazard assessment of the continent or locations within the continent. Information on major faults, fault plane solutions, geophysical data as well as stress data has so far been collected and included in a database for the southern Africa region. Reports published by several experts contributed much to the collected information. The seismicity data used are part of the earthquake catalogue being prepared for the GEM-Africa project, which includes historical and instrumental records as collected from various sources. An effort has been made to characterise the identified major faults and through further analysis investigate their possible impact on the seismic hazard of southern Africa.

BoreholeAR: A mobile tablet application for effective borehole database visualization using an augmented reality technology

NASA Astrophysics Data System (ADS)

Lee, Sangho; Suh, Jangwon; Park, Hyeong-Dong

2015-03-01

Boring logs are widely used in geological field studies since the data describes various attributes of underground and surface environments. However, it is difficult to manage multiple boring logs in the field as the conventional management and visualization methods are not suitable for integrating and combining large data sets. We developed an iPad application to enable its user to search the boring log rapidly and visualize them using the augmented reality (AR) technique. For the development of the application, a standard borehole database appropriate for a mobile-based borehole database management system was designed. The application consists of three modules: an AR module, a map module, and a database module. The AR module superimposes borehole data on camera imagery as viewed by the user and provides intuitive visualization of borehole locations. The map module shows the locations of corresponding borehole data on a 2D map with additional map layers. The database module provides data management functions for large borehole databases for other modules. Field survey was also carried out using more than 100,000 borehole data.

The GLIMS Glacier Database

NASA Astrophysics Data System (ADS)

Raup, B. H.; Khalsa, S. S.; Armstrong, R.

2007-12-01

The Global Land Ice Measurements from Space (GLIMS) project has built a geospatial and temporal database of glacier data, composed of glacier outlines and various scalar attributes. These data are being derived primarily from satellite imagery, such as from ASTER and Landsat. Each "snapshot" of a glacier is from a specific time, and the database is designed to store multiple snapshots representative of different times. We have implemented two web-based interfaces to the database; one enables exploration of the data via interactive maps (web map server), while the other allows searches based on text-field constraints. The web map server is an Open Geospatial Consortium (OGC) compliant Web Map Server (WMS) and Web Feature Server (WFS). This means that other web sites can display glacier layers from our site over the Internet, or retrieve glacier features in vector format. All components of the system are implemented using Open Source software: Linux, PostgreSQL, PostGIS (geospatial extensions to the database), MapServer (WMS and WFS), and several supporting components such as Proj.4 (a geographic projection library) and PHP. These tools are robust and provide a flexible and powerful framework for web mapping applications. As a service to the GLIMS community, the database contains metadata on all ASTER imagery acquired over glacierized terrain. Reduced-resolution of the images (browse imagery) can be viewed either as a layer in the MapServer application, or overlaid on the virtual globe within Google Earth. The interactive map application allows the user to constrain by time what data appear on the map. For example, ASTER or glacier outlines from 2002 only, or from Autumn in any year, can be displayed. The system allows users to download their selected glacier data in a choice of formats. The results of a query based on spatial selection (using a mouse) or text-field constraints can be downloaded in any of these formats: ESRI shapefiles, KML (Google Earth), MapInfo, GML (Geography Markup Language) and GMT (Generic Mapping Tools). This "clip-and-ship" function allows users to download only the data they are interested in. Our flexible web interfaces to the database, which includes various support layers (e.g. a layer to help collaborators identify satellite imagery over their region of expertise) will facilitate enhanced analysis to be undertaken on glacier systems, their distribution, and their impacts on other Earth systems.

Preliminary surficial geologic map of a Calico Mountains piedmont and part of Coyote Lake, Mojave desert, San Bernardino County, California

USGS Publications Warehouse

Dudash, Stephanie L.

2006-01-01

This 1:24,000 scale detailed surficial geologic map and digital database of a Calico Mountains piedmont and part of Coyote Lake in south-central California depicts surficial deposits and generalized bedrock units. The mapping is part of a USGS project to investigate the spatial distribution of deposits linked to changes in climate, to provide framework geology for land use management (http://deserts.wr.usgs.gov), to understand the Quaternary tectonic history of the Mojave Desert, and to provide additional information on the history of Lake Manix, of which Coyote Lake is a sub-basin. Mapping is displayed on parts of four USGS 7.5 minute series topographic maps. The map area lies in the central Mojave Desert of California, northeast of Barstow, Calif. and south of Fort Irwin, Calif. and covers 258 sq.km. (99.5 sq.mi.). Geologic deposits in the area consist of Paleozoic metamorphic rocks, Mesozoic plutonic rocks, Miocene volcanic rocks, Pliocene-Pleistocene basin fill, and Quaternary surficial deposits. McCulloh (1960, 1965) conducted bedrock mapping and a generalized version of his maps are compiled into this map. McCulloh's maps contain many bedrock structures within the Calico Mountains that are not shown on the present map. This study resulted in several new findings, including the discovery of previously unrecognized faults, one of which is the Tin Can Alley fault. The north-striking Tin Can Alley fault is part of the Paradise fault zone (Miller and others, 2005), a potentially important feature for studying neo-tectonic strain in the Mojave Desert. Additionally, many Anodonta shells were collected in Coyote Lake lacustrine sediments for radiocarbon dating. Preliminary results support some of Meek's (1999) conclusions on the timing of Mojave River inflow into the Coyote Basin. The database includes information on geologic deposits, samples, and geochronology. The database is distributed in three parts: spatial map-based data, documentation, and printable map graphics of the database. Spatial data are distributed as an ArcInfo personal geodatabase, or as tabular data in the form of Microsoft Access Database (MDB) or dBase Format (DBF) file formats. Documentation includes this file, which provides a discussion of the surficial geology and describes the format and content of the map data, and Federal Geographic Data Committee (FGDC) metadata for the spatial map information. Map graphics files are distributed as Postscript and Adobe Acrobat Portable Document Format (PDF) files, and are appropriate for representing a view of the spatial database at the mapped scale.

Landslide Susceptibility Mapping Using Geospatial Technology in South Eastern Part of Nilgiri District, Tamilnadu, India

NASA Astrophysics Data System (ADS)

Thangasamy, N.; Varathan, R.

2013-05-01

Landslides are often destructive and periodically affect the Nilgiris district. Two method viz., Frequency ratio (FR) and Weights of evidence (WofE) were used to reclassify the sub-variables and the landslide susceptibility index (LSI) was calculated by weighted sum overlay analysis. The final LS Zonation map was prepared from the LSI and the area was classified into two zones. Validation of the LSM was the next step and was accomplished by excluding some landslide points in the GIS analyses and overlying the unused landslides points over the LSM. The LSMs prepared using the FR and WofE methods are reliable as more than 75% of the excluded slides fall in high and very high landslide susceptibility zones and the error of mismatch in the two maps is negligible.During the course of this study landslides devastated the Kethi, Coonoor, Barliyar and Kothagiri areas due to an extreme event with 374 to 1,171 mm rainfall received in these stations in just three days on 8th to 10th November, 2009. The rainfall event is unprecedented and such extreme rainfall has not occurred in the region since meteorological records are maintained. Over 100 landslides took place in the area of which 75 are major slides and more 43 people died and 200 houses were damaged. The event was documented and a data base containing the location, details of death, slide characteristics and photographs was prepared. Further, the probability of landslide occurrence may change over time due to changes in land use, unscientific massive developmental activities and establishing settlements without adopting proper safety measures. The study also highlights the need for maintenance of landslide database and installation of more rain gauge stations to update and improve the LSM so as to reduce the risk of landslide hazard faced by the Community. NaveenRaj.T INDIA LANDSLIDE SUSCEPTIBILITY MAPPING USING GEOSPATIAL TECHNOLOGY IN SOUTH EASTERN PART OF NILGIRI DISTRICT, TAMILNADU, INDIA.

The Protein Identifier Cross-Referencing (PICR) service: reconciling protein identifiers across multiple source databases.

PubMed

Côté, Richard G; Jones, Philip; Martens, Lennart; Kerrien, Samuel; Reisinger, Florian; Lin, Quan; Leinonen, Rasko; Apweiler, Rolf; Hermjakob, Henning

2007-10-18

Each major protein database uses its own conventions when assigning protein identifiers. Resolving the various, potentially unstable, identifiers that refer to identical proteins is a major challenge. This is a common problem when attempting to unify datasets that have been annotated with proteins from multiple data sources or querying data providers with one flavour of protein identifiers when the source database uses another. Partial solutions for protein identifier mapping exist but they are limited to specific species or techniques and to a very small number of databases. As a result, we have not found a solution that is generic enough and broad enough in mapping scope to suit our needs. We have created the Protein Identifier Cross-Reference (PICR) service, a web application that provides interactive and programmatic (SOAP and REST) access to a mapping algorithm that uses the UniProt Archive (UniParc) as a data warehouse to offer protein cross-references based on 100% sequence identity to proteins from over 70 distinct source databases loaded into UniParc. Mappings can be limited by source database, taxonomic ID and activity status in the source database. Users can copy/paste or upload files containing protein identifiers or sequences in FASTA format to obtain mappings using the interactive interface. Search results can be viewed in simple or detailed HTML tables or downloaded as comma-separated values (CSV) or Microsoft Excel (XLS) files suitable for use in a local database or a spreadsheet. Alternatively, a SOAP interface is available to integrate PICR functionality in other applications, as is a lightweight REST interface. We offer a publicly available service that can interactively map protein identifiers and protein sequences to the majority of commonly used protein databases. Programmatic access is available through a standards-compliant SOAP interface or a lightweight REST interface. The PICR interface, documentation and code examples are available at http://www.ebi.ac.uk/Tools/picr.

The Protein Identifier Cross-Referencing (PICR) service: reconciling protein identifiers across multiple source databases

PubMed Central

Côté, Richard G; Jones, Philip; Martens, Lennart; Kerrien, Samuel; Reisinger, Florian; Lin, Quan; Leinonen, Rasko; Apweiler, Rolf; Hermjakob, Henning

2007-01-01

Background Each major protein database uses its own conventions when assigning protein identifiers. Resolving the various, potentially unstable, identifiers that refer to identical proteins is a major challenge. This is a common problem when attempting to unify datasets that have been annotated with proteins from multiple data sources or querying data providers with one flavour of protein identifiers when the source database uses another. Partial solutions for protein identifier mapping exist but they are limited to specific species or techniques and to a very small number of databases. As a result, we have not found a solution that is generic enough and broad enough in mapping scope to suit our needs. Results We have created the Protein Identifier Cross-Reference (PICR) service, a web application that provides interactive and programmatic (SOAP and REST) access to a mapping algorithm that uses the UniProt Archive (UniParc) as a data warehouse to offer protein cross-references based on 100% sequence identity to proteins from over 70 distinct source databases loaded into UniParc. Mappings can be limited by source database, taxonomic ID and activity status in the source database. Users can copy/paste or upload files containing protein identifiers or sequences in FASTA format to obtain mappings using the interactive interface. Search results can be viewed in simple or detailed HTML tables or downloaded as comma-separated values (CSV) or Microsoft Excel (XLS) files suitable for use in a local database or a spreadsheet. Alternatively, a SOAP interface is available to integrate PICR functionality in other applications, as is a lightweight REST interface. Conclusion We offer a publicly available service that can interactively map protein identifiers and protein sequences to the majority of commonly used protein databases. Programmatic access is available through a standards-compliant SOAP interface or a lightweight REST interface. The PICR interface, documentation and code examples are available at . PMID:17945017

Database for potential hazards from future volcanic eruptions in California

USGS Publications Warehouse

White, Melissa N.; Ramsey, David W.; Miller, C. Dan

2011-01-01

More than 500 volcanic vents have been identified in the State of California. At least 76 of these vents have erupted, some repeatedly, during the past 10,000 yr. Past volcanic activity has ranged in scale and type from small rhyolitic and basaltic eruptions through large catastrophic rhyolitic eruptions. Sooner or later, volcanoes in California will erupt again, and they could have serious impacts on the health and safety of the State's citizens as well as on its economy. This report describes the nature and probable distribution of potentially hazardous volcanic phenomena and their threat to people and property. It includes hazard-zonation maps that show areas relatively likely to be affected by future eruptions in California. This digital release contains information from maps of potential hazards from future volcanic eruptions in the state of California, published as Plate 1 in U.S. Geological Survey Bulletin 1847. The main component of this digital release is a spatial database prepared using geographic information systems (GIS) applications. This release also contains links to files to view or print the map plate, main report text, and accompanying hazard tables from Bulletin 1847. It should be noted that much has been learned about the ages of eruptive events in the State of California since the publication of Bulletin 1847 in 1989. For the most up to date information on the status of California volcanoes, please refer to the U.S. Geological Survey Volcano Hazards Program website.

Proteomic analysis of cellular soluble proteins from human bronchial smooth muscle cells by combining nondenaturing micro 2DE and quantitative LC-MS/MS. 2. Similarity search between protein maps for the analysis of protein complexes.

PubMed

Jin, Ya; Yuan, Qi; Zhang, Jun; Manabe, Takashi; Tan, Wen

2015-09-01

Human bronchial smooth muscle cell soluble proteins were analyzed by a combined method of nondenaturing micro 2DE, grid gel-cutting, and quantitative LC-MS/MS and a native protein map was prepared for each of the identified 4323 proteins [1]. A method to evaluate the degree of similarity between the protein maps was developed since we expected the proteins comprising a protein complex would be separated together under nondenaturing conditions. The following procedure was employed using Excel macros; (i) maps that have three or more squares with protein quantity data were selected (2328 maps), (ii) within each map, the quantity values of the squares were normalized setting the highest value to be 1.0, (iii) in comparing a map with another map, the smaller normalized quantity in two corresponding squares was taken and summed throughout the map to give an "overlap score," (iv) each map was compared against all the 2328 maps and the largest overlap score, obtained when a map was compared with itself, was set to be 1.0 thus providing 2328 "overlap factors," (v) step (iv) was repeated for all maps providing 2328 × 2328 matrix of overlap factors. From the matrix, protein pairs that showed overlap factors above 0.65 from both protein sides were selected (431 protein pairs). Each protein pair was searched in a database (UniProtKB) on complex formation and 301 protein pairs, which comprise 35 protein complexes, were found to be documented. These results demonstrated that native protein maps and their similarity search would enable simultaneous analysis of multiple protein complexes in cells. © 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Digital version of "Open-File Report 92-179: Geologic map of the Cow Cove Quadrangle, San Bernardino County, California"

USGS Publications Warehouse

Wilshire, Howard G.; Bedford, David R.; Coleman, Teresa

2002-01-01

3. Plottable map representations of the database at 1:24,000 scale in PostScript and Adobe PDF formats. The plottable files consist of a color geologic map derived from the spatial database, composited with a topographic base map in the form of the USGS Digital Raster Graphic for the map area. Color symbology from each of these datasets is maintained, which can cause plot file sizes to be large.

Geologic and aeromagnetic maps of the Fossil Ridge area and vicinity, Gunnison County, Colorado

USGS Publications Warehouse

DeWitt, Ed; Zech, R.S.; Chase, C.G.; Zartman, R.E.; Kucks, R.P.; Bartelson, Bruce; Rosenlund, G.C.; Earley, Drummond

2002-01-01

This data set includes a GIS geologic map database of an Early Proterozoic metavolcanic and metasedimentary terrane extensively intruded by Early and Middle Proterozoic granitic plutons. Laramide to Tertiary deformation and intrusion of felsic plutons have created numerous small mineral deposits that are described in the tables and are shown on the figures in the accompanying text pamphlet. Also included in the pamphlet are numerous chemical analyses of igneous and meta-igneous bodies of all ages in tables and in summary geochemical diagrams. The text pamphlet also contains a detailed description of map units and discussions of the aeromagnetic survey, igneous and metmorphic rocks, and mineral deposits. The printed map sheet and browse graphic pdf file include the aeromagnetic map of the study area, as well as figures and photographs. Purpose: This GIS geologic map database is provided to facilitate the presentation and analysis of earth-science data for this region of Colorado. This digital map database may be displayed at any scale or projection. However, the geologic data in this coverage are not intended for use at a scale other than 1:30,000. Supplemental useful data accompanying the database are extensive geochemical and mineral deposits data, as well as an aeromagnetic map.

A mapping review of the literature on UK-focused health and social care databases.

PubMed

Cooper, Chris; Rogers, Morwenna; Bethel, Alison; Briscoe, Simon; Lowe, Jenny

2015-03-01

Bibliographic databases are a day-to-day tool of the researcher: they offer the researcher easy and organised access to knowledge, but how much is actually known about the databases on offer? The focus of this paper is UK health and social care databases. These databases are often small, specialised by topic, and provide a complementary literature to the large, international databases. There is, however, good evidence that these databases are overlooked in systematic reviews, perhaps because little is known about what they can offer. To systematically locate and map, published and unpublished literature on the key UK health and social care bibliographic databases. Systematic searching and mapping. Two hundred and forty-two items were identified which specifically related to the 24 of the 34 databases under review. There is little published or unpublished literature specifically analysing the key UK health and social care databases. Since several UK databases have closed, others are at risk, and some are overlooked in reviews, better information is required to enhance our knowledge. Further research on UK health and social care databases is required. This paper suggests the need to develop the evidence base through a series of case studies on each of the databases. © 2014 The authors. Health Information and Libraries Journal © 2014 Health Libraries Journal.

Map and map database of susceptibility to slope failure by sliding and earthflow in the Oakland area, California

USGS Publications Warehouse

Pike, R.J.; Graymer, R.W.; Roberts, Sebastian; Kalman, N.B.; Sobieszczyk, Steven

2001-01-01

Map data that predict the varying likelihood of landsliding can help public agencies make informed decisions on land use and zoning. This map, prepared in a geographic information system from a statistical model, estimates the relative likelihood of local slopes to fail by two processes common to an area of diverse geology, terrain, and land use centered on metropolitan Oakland. The model combines the following spatial data: (1) 120 bedrock and surficial geologic-map units, (2) ground slope calculated from a 30-m digital elevation model, (3) an inventory of 6,714 old landslide deposits (not distinguished by age or type of movement and excluding debris flows), and (4) the locations of 1,192 post-1970 landslides that damaged the built environment. The resulting index of likelihood, or susceptibility, plotted as a 1:50,000-scale map, is computed as a continuous variable over a large area (872 km2) at a comparatively fine (30 m) resolution. This new model complements landslide inventories by estimating susceptibility between existing landslide deposits, and improves upon prior susceptibility maps by quantifying the degree of susceptibility within those deposits. Susceptibility is defined for each geologic-map unit as the spatial frequency (areal percentage) of terrain occupied by old landslide deposits, adjusted locally by steepness of the topography. Susceptibility of terrain between the old landslide deposits is read directly from a slope histogram for each geologic-map unit, as the percentage (0.00 to 0.90) of 30-m cells in each one-degree slope interval that coincides with the deposits. Susceptibility within landslide deposits (0.00 to 1.33) is this same percentage raised by a multiplier (1.33) derived from the comparative frequency of recent failures within and outside the old deposits. Positive results from two evaluations of the model encourage its extension to the 10-county San Francisco Bay region and elsewhere. A similar map could be prepared for any area where the three basic constituents, a geologic map, a landslide inventory, and a slope map, are available in digital form. Added predictive power of the new susceptibility model may reside in attributes that remain to be explored?among them seismic shaking, distance to nearest road, and terrain elevation, aspect, relief, and curvature.

Metallogenic belt and mineral deposit maps of northeast Asia

USGS Publications Warehouse

Obolenskiy, Alexander A.; Rodionov, Sergey M.; Dejidmaa, Gunchin; Gerel, Ochir; Hwang, Duk-Hwan; Miller, Robert J.; Nokleberg, Warren J.; Ogasawara, Masatsugu; Smelov, Alexander P.; Yan, Hongquan; Seminskiy, Zhan V.

2013-01-01

This report contains explanatory material and summary tables for lode mineral deposits and placer districts (Map A, sheet 1) and metallogenic belts of Northeast Asia (Maps B, C, and D on sheets 2, 3, and 4, respectively). The map region includes eastern Siberia, southeastern Russia, Mongolia, northeast China, and Japan. A large group of geologists—members of the joint international project, Major Mineral Deposits, Metallogenesis, and Tectonics of Northeast Asia—prepared the maps, tables, and introductory text. This is a cooperative project with the Russian Academy of Sciences, Mongolian Academy of Sciences, Mongolian National University, Ulaanbaatar, Mongolian Technical University, Mineral Resources Authority of Mongolia, Geological Research Institute, Jilin University, China Geological Survey, Korea Institute of Geoscience and Mineral Resources, Geological Survey of Japan, and U.S. Geological Survey. This report is one of a series of reports on the mineral resources, geodynamics, and metallogenesis of Northeast Asia. Companion studies include (1) a detailed geodynamics map of Northeast Asia (Parfenov and others, 2003); (2) a compilation of major mineral deposit models (Rodionov and Nokleberg, 2000; Rodionov and others, 2000); (3) a series of metallogenic belt maps (Obolenskiy and others, 2004); (4) location map of lode mineral deposits and placer districts of Northeast Asia (Ariunbileg and others, 2003b); (5) descriptions of metallogenic belts (Rodionov and others, 2004); (6) a database on significant metalliferous and selected nonmetalliferous lode deposits and selected placer districts (Ariunbileg and others, 2003a); and (7) a series of summary project publications (Ariunbileg and 74 others, 2003b).

The Circumpolar Arctic vegetation map

USGS Publications Warehouse

Walker, Donald A.; Raynolds, Martha K.; Daniels, F.J.A.; Einarsson, E.; Elvebakk, A.; Gould, W.A.; Katenin, A.E.; Kholod, S.S.; Markon, C.J.; Melnikov, E.S.; Moskalenko, N.G.; Talbot, S. S.; Yurtsev, B.A.; Bliss, L.C.; Edlund, S.A.; Zoltai, S.C.; Wilhelm, M.; Bay, C.; Gudjonsson, G.; Ananjeva, G.V.; Drozdov, D.S.; Konchenko, L.A.; Korostelev, Y.V.; Ponomareva, O.E.; Matveyeva, N.V.; Safranova, I.N.; Shelkunova, R.; Polezhaev, A.N.; Johansen, B.E.; Maier, H.A.; Murray, D.F.; Fleming, Michael D.; Trahan, N.G.; Charron, T.M.; Lauritzen, S.M.; Vairin, B.A.

2005-01-01

Question: What are the major vegetation units in the Arctic, what is their composition, and how are they distributed among major bioclimate subzones and countries? Location: The Arctic tundra region, north of the tree line. Methods: A photo-interpretive approach was used to delineate the vegetation onto an Advanced Very High Resolution Radiometer (AVHRR) base image. Mapping experts within nine Arctic regions prepared draft maps using geographic information technology (ArcInfo) of their portion of the Arctic, and these were later synthesized to make the final map. Area analysis of the map was done according to bioclimate subzones, and country. The integrated mapping procedures resulted in other maps of vegetation, topography, soils, landscapes, lake cover, substrate pH, and above-ground biomass. Results: The final map was published at 1:7 500 000 scale map. Within the Arctic (total area = 7.11 x 106 km 2), about 5.05 ?? 106 km2 is vegetated. The remainder is ice covered. The map legend generally portrays the zonal vegetation within each map polygon. About 26% of the vegetated area is erect shrublands, 18% peaty graminoid tundras, 13% mountain complexes, 12% barrens, 11% mineral graminoid tundras, 11% prostrate-shrub tundras, and 7% wetlands. Canada has by far the most terrain in the High Arctic mostly associated with abundant barren types and prostrate dwarf-shrub tundra, whereas Russia has the largest area in the Low Arctic, predominantly low-shrub tundra. Conclusions: The CAVM is the first vegetation map of an entire global biome at a comparable resolution. The consistent treatment of the vegetation across the circumpolar Arctic, abundant ancillary material, and digital database should promote the application to numerous land-use, and climate-change applications and will make updating the map relatively easy. ?? IAVS; Opulus Press.

Database compilation for the geologic map of the San Francisco volcanic field, north-central Arizona

USGS Publications Warehouse

Bard, Joseph A.; Ramsey, David W.; Wolfe, Edward W.; Ulrich, George E.; Newhall, Christopher G.; Moore, Richard B.; Bailey, Norman G.; Holm, Richard F.

2016-01-08

The orignial geologic maps were prepared under the Geothermal Research Program of the U.S. Geological Survey as a basis for interpreting the history of magmatic activity in the volcanic field. The San Francisco field, which is largely Pleistocene in age, is in northern Arizona, just north of the broad transition zone between the Colorado Plateau and the Basin and Range province. It is one of several dominantly basaltic volcanic fields of the late Cenozoic age situated near the margin of the Colorado Plateau. The volcanic field contains rocks ranging in composition from basalt to rhyolite—the products of eruption through Precambrian basement rocks and approximately a kilometer of overlying, nearly horizontal, Paleozoic and Mesozoic sedimentary rocks. About 500 km3 of erupted rocks cover about 5,000 km2 of predominantly Permian and locally preserved Triassic sedimentary rocks that form the erosionally stripped surface of the Colorado Plateau in Northern Arizona.

RatMap--rat genome tools and data.

PubMed

Petersen, Greta; Johnson, Per; Andersson, Lars; Klinga-Levan, Karin; Gómez-Fabre, Pedro M; Ståhl, Fredrik

2005-01-01

The rat genome database RatMap (http://ratmap.org or http://ratmap.gen.gu.se) has been one of the main resources for rat genome information since 1994. The database is maintained by CMB-Genetics at Goteborg University in Sweden and provides information on rat genes, polymorphic rat DNA-markers and rat quantitative trait loci (QTLs), all curated at RatMap. The database is under the supervision of the Rat Gene and Nomenclature Committee (RGNC); thus much attention is paid to rat gene nomenclature. RatMap presents information on rat idiograms, karyotypes and provides a unified presentation of the rat genome sequence and integrated rat linkage maps. A set of tools is also available to facilitate the identification and characterization of rat QTLs, as well as the estimation of exon/intron number and sizes in individual rat genes. Furthermore, comparative gene maps of rat in regard to mouse and human are provided.

MapApp: A Java(TM) Applet for Accessing Geographic Databases

NASA Astrophysics Data System (ADS)

Haxby, W.; Carbotte, S.; Ryan, W. B.; OHara, S.

2001-12-01

MapApp (http://coast.ldeo.columbia.edu/help/MapApp.html) is a prototype Java(TM) applet that is intended to give easy and versatile access to geographic data sets through a web browser. It was developed initially to interface with the RIDGE Multibeam Synthesis. Subsequently, interfaces with other geophysical databases were added. At present, multibeam bathymetry grids, underway geophysics along ship tracks, and the LDEO Borehole Research Group's ODP well logging database are accessible through MapApp. We plan to add an interface with the Ridge Petrology Database in the near future. The central component of MapApp is a world physiographic map. Users may navigate around the map (zoom/pan) without waiting for HTTP requests to a remote server to be processed. A focus request loads image tiles from the server to compose a new map at the current viewing resolution. Areas in which multibeam grids are available may be focused to a pixel resolution of about 200 m. These areas may be identified by toggling a mask. Databases may be accessed through menus, and selected data objects may be loaded into MapApp by selecting items from tables. Once loaded, a bathymetry grid may be contoured or used to create bathymetric profiles; ship tracks and ODP sites may be overlain on the map and their geophysical data plotted in X-Y graphs. The advantage of applets over traditional web pages is that they permit dynamic interaction with data sets, while limiting time consuming interaction with a remote server. Users may customize the graphics display by modifying the scale, or the symbol or line characteristics of rendered data, contour interval, etc. The ease with which users can select areas, view the physiography of areas, and preview data sets and evaluate them for quality and applicability, makes MapApp a valuable tool for education and research.

Coastal resource and sensitivity mapping of Vietnam

DOE Office of Scientific and Technical Information (OSTI.GOV)

Odin, L.M.

1997-08-01

This paper describes a project to establish a relationship between environmental sensitivity (primarily to oil pollution) and response planning and prevention priorities for Vietnamese coastal regions. An inventory of coastal environmental sensitivity and the creation of index mapping was performed. Satellite and geographical information system data were integrated and used for database creation. The database was used to create a coastal resource map, coastal sensitivity map, and a field inventory base map. The final coastal environment sensitivity classification showed that almost 40 percent of the 7448 km of mapped shoreline has a high to medium high sensitivity to oil pollution.

Infiltration processes in karstic chalk investigated through a spatial analysis of the geochemical properties of the groundwater: The effect of the superficial layer of clay-with-flints

NASA Astrophysics Data System (ADS)

Valdes, Danièle; Dupont, Jean-Paul; Laignel, Benoît; Slimani, Smaïl; Delbart, Célestine

2014-11-01

In the Paris Basin in Upper Normandy (France), the chalk plateaus are covered with thick deposits of loess and clay-with-flints, from a few meters to approximately 40 m thick locally. A perched groundwater is sometimes observed in the superficial layers in which evapotranspiration processes seem to occur. This study's objective was to understand the effects of the thick clay-with-flints layers on the infiltration processes. To achieve this, we adopted a spatial approach comparing the maps of the geochemical properties of the Chalk groundwater and the maps of the thickness of clay-with-flints. The French national groundwater database, ADES (Accès aux Données des Eaux, BRGM), provided the mean geochemical properties in the Chalk aquifer of Upper Normandy. This database was used to prepare maps of the environmental tracers: Ca2+, HCO3-, Mg2+, Cl-, Na+, NO3-, and SO42. The data are spatially well organized. Using principal component analysis (PCA), these maps were compared with the maps of the thickness of clay-with-flints. A focus on the coastal basins (northern Upper Normandy) shows a very strong spatial correlation between the maps of clay-with-flints thickness and all of the maps of the major ions. The thickness of clay-with-flints is negatively correlated with the autochthonous ions (HCO3- and Ca2+) and is positively correlated with the allochthonous ions (Cl-, Na+, SO42-, and NO3-). These results highlight that the thickness of clay-with-flints controls recharge. Two types of infiltration processes are proposed: (1) Thicker clay-with-flints allows storage in the perched groundwater, which allows evapotranspiration, resulting in high concentrations of allochthonous ions and a decrease in the dissolution potential of water and low concentrations of autochthonous ions. The infiltration of the perched groundwater is thus delayed and concentrated. (2) Thinner clay-with-flints causes the infiltration to be more diffuse, with low evapotranspiration and thus low concentrations of allochthonous ions in the Chalk groundwater; more, there is more dissolution and higher concentrations of autochthonous ions in the Chalk groundwater.

Quaternary geologic map of the Glasgow 1° x 2° quadrangle, Montana

USGS Publications Warehouse

Fullerton, David S.; Colton, Roger B.; Bush, Charles A.

2012-01-01

The Glasgow quadrangle encompasses approximately 16,084 km2 (6,210 mi2). The northern boundary is the Montana/Saskatchewan (U.S./Canada) boundary. The quadrangle is in the Northern Plains physiographic province and it includes the Boundary Plateau, Peerless Plateau, and Larb Hills. The primary river is the Milk River. The map units are surficial deposits and materials, not landforms. Deposits that comprise some constructional landforms (for example, ground-moraine deposits, end-moraine deposits, and stagnation-moraine deposits, all composed of till) are distinguished for purposes of reconstruction of glacial history. Surficial deposits and materials are assigned to 23 map units on the basis of genesis, age, lithology or composition, texture or particle size, and other physical, chemical, and engineering characteristics. It is not a map of soils that are recognized in pedology or agronomy. Rather, it is a generalized map of soils recognized in engineering geology, or of substrata or parent materials in which pedologic or agronomic soils are formed. Glaciotectonic (ice-thrust) structures and deposits are mapped separately, represented by a symbol. The surficial deposits are glacial, ice-contact, glaciofluvial, alluvial, lacustrine, eolian, colluvial, and mass-movement deposits. Residuum, a surficial material, also is mapped. Till of late Wisconsin age is represented by three map units. Till of Illinoian age is also represented locally but is widespread in the subsurface. This map was prepared to serve as a database for compilation of a Quaternary geologic map of the United States and Canada (scale 1:1,000,000). Letter symbols for the map units are those used for the same units in the Quaternary Geologic Atlas of the United States map series.

Candidate gene database and transcript map for peach, a model species for fruit trees.

PubMed

Horn, Renate; Lecouls, Anne-Claire; Callahan, Ann; Dandekar, Abhaya; Garay, Lilibeth; McCord, Per; Howad, Werner; Chan, Helen; Verde, Ignazio; Main, Doreen; Jung, Sook; Georgi, Laura; Forrest, Sam; Mook, Jennifer; Zhebentyayeva, Tatyana; Yu, Yeisoo; Kim, Hye Ran; Jesudurai, Christopher; Sosinski, Bryon; Arús, Pere; Baird, Vance; Parfitt, Dan; Reighard, Gregory; Scorza, Ralph; Tomkins, Jeffrey; Wing, Rod; Abbott, Albert Glenn

2005-05-01

Peach (Prunus persica) is a model species for the Rosaceae, which includes a number of economically important fruit tree species. To develop an extensive Prunus expressed sequence tag (EST) database for identifying and cloning the genes important to fruit and tree development, we generated 9,984 high-quality ESTs from a peach cDNA library of developing fruit mesocarp. After assembly and annotation, a putative peach unigene set consisting of 3,842 ESTs was defined. Gene ontology (GO) classification was assigned based on the annotation of the single "best hit" match against the Swiss-Prot database. No significant homology could be found in the GenBank nr databases for 24.3% of the sequences. Using core markers from the general Prunus genetic map, we anchored bacterial artificial chromosome (BAC) clones on the genetic map, thereby providing a framework for the construction of a physical and transcript map. A transcript map was developed by hybridizing 1,236 ESTs from the putative peach unigene set and an additional 68 peach cDNA clones against the peach BAC library. Hybridizing ESTs to genetically anchored BACs immediately localized 11.2% of the ESTs on the genetic map. ESTs showed a clustering of expressed genes in defined regions of the linkage groups. [The data were built into a regularly updated Genome Database for Rosaceae (GDR), available at (http://www.genome.clemson.edu/gdr/).].

Cadastral Positioning Accuracy Improvement: a Case Study in Malaysia

NASA Astrophysics Data System (ADS)

Hashim, N. M.; Omar, A. H.; Omar, K. M.; Abdullah, N. M.; Yatim, M. H. M.

2016-09-01

Cadastral map is a parcel-based information which is specifically designed to define the limitation of boundaries. In Malaysia, the cadastral map is under authority of the Department of Surveying and Mapping Malaysia (DSMM). With the growth of spatial based technology especially Geographical Information System (GIS), DSMM decided to modernize and reform its cadastral legacy datasets by generating an accurate digital based representation of cadastral parcels. These legacy databases usually are derived from paper parcel maps known as certified plan. The cadastral modernization will result in the new cadastral database no longer being based on single and static parcel paper maps, but on a global digital map. Despite the strict process of the cadastral modernization, this reform has raised unexpected queries that remain essential to be addressed. The main focus of this study is to review the issues that have been generated by this transition. The transformed cadastral database should be additionally treated to minimize inherent errors and to fit them to the new satellite based coordinate system with high positional accuracy. This review result will be applied as a foundation for investigation to study the systematic and effectiveness method for Positional Accuracy Improvement (PAI) in cadastral database modernization.

Spatial digital database for the geologic map of the east part of the Pullman 1° x 2° quadrangle, Idaho

USGS Publications Warehouse

Rember, William C.; Bennett, Earl H.

2001-01-01

he paper geologic map of the east part of the Pullman 1·x 2· degree quadrangle, Idaho (Rember and Bennett, 1979) was scanned and initially attributed by Optronics Specialty Co., Inc. (Northridge, CA) and remitted to the U.S. Geological Survey for further attribution and publication of the geospatial digital files. The resulting digital geologic map GIS can be queried in many ways to produce a variety of geologic maps. This digital geospatial database is one of many being created by the U.S. Geological Survey as an ongoing effort to provide geologic information in a geographic information system (GIS) for use in spatial analysis. Digital base map data files (topography, roads, towns, rivers and lakes, and others.) are not included: they may be obtained from a variety of commercial and government sources. This database is not meant to be used or displayed at any scale larger than 1:250,000 (for example, 1:100,000 or 1:24,000). The digital geologic map graphics and plot files (pull250k.gra/.hp /.eps) that are provided in the digital package are representations of the digital database.

Mapping analysis and planning system for the John F. Kennedy Space Center

NASA Technical Reports Server (NTRS)

Hall, C. R.; Barkaszi, M. J.; Provancha, M. J.; Reddick, N. A.; Hinkle, C. R.; Engel, B. A.; Summerfield, B. R.

1994-01-01

Environmental management, impact assessment, research and monitoring are multidisciplinary activities which are ideally suited to incorporate a multi-media approach to environmental problem solving. Geographic information systems (GIS), simulation models, neural networks and expert-system software are some of the advancing technologies being used for data management, query, analysis and display. At the 140,000 acre John F. Kennedy Space Center, the Advanced Software Technology group has been supporting development and implementation of a program that integrates these and other rapidly evolving hardware and software capabilities into a comprehensive Mapping, Analysis and Planning System (MAPS) based in a workstation/local are network environment. An expert-system shell is being developed to link the various databases to guide users through the numerous stages of a facility siting and environmental assessment. The expert-system shell approach is appealing for its ease of data access by management-level decision makers while maintaining the involvement of the data specialists. This, as well as increased efficiency and accuracy in data analysis and report preparation, can benefit any organization involved in natural resources management.

Temporal geospatial analysis of secondary school students’ examination performance

NASA Astrophysics Data System (ADS)

Nik Abd Kadir, ND; Adnan, NA

2016-06-01

Malaysia's Ministry of Education has improved the organization of the data to have the geographical information system (GIS) school database. However, no further analysis is done using geospatial analysis tool. Mapping has emerged as a communication tool and becomes effective way to publish the digital and statistical data such as school performance results. The objective of this study is to analyse secondary school student performance of science and mathematics scores of the Sijil Pelajaran Malaysia Examination result in the year 2010 to 2014 for the Kelantan's state schools with the aid of GIS software and geospatial analysis. The school performance according to school grade point average (GPA) from Grade A to Grade G were interpolated and mapped and query analysis using geospatial tools able to be done. This study will be beneficial to the education sector to analyse student performance not only in Kelantan but to the whole Malaysia and this will be a good method to publish in map towards better planning and decision making to prepare young Malaysians for the challenges of education system and performance.

Preliminary Geologic Map of the Little Piute Mountains, California; a Digital Database

USGS Publications Warehouse

Howard, Keith A.; Dennis, Michael L.; Karlstrom, Karl; Phelps, Geoffrey A.

1997-01-01

Introduction The Little Piute Mountains in the eastern Mojave Desert expose a series of folds and thrust faults involving metamorphosed Paleozoic strata (Miller and others, 1982; Stone and others, 1983). Detailed mapping of these structures was undertaken to help elucidate regional Mesozoic structural evolution. Earlier geologic maps were prepared by Cooksley (1960a,b,c,d, generalized by Bishop, 1964) and Stone and others (1983). Deformed and metamorphosed Paleozoic and Triassic rocks form a stratal succession that was originally deposited in shallow seas on the North American craton. Based on lithologic sequence the units are correlated with unmetamorphosed equivalents 200 km to the northeast in the Grand Canyon, Arizona, and 35-50 km to the west in the Marble, Ship, and Providence Mountains, California (Stone and others, 1983). The Paleozoic sequence rests nonconformably on a heterogeneous basement of polydeformed Early Proterozoic gneiss (Miller and others, 1982; Wooden and Miller, 1990). Triassic and older rocks were deformed, metamorphosed to staurolite or andalusite grade, and intruded concordantly at their base by Late Cretaceous granodiorite (Miller and others, 1982).

Collaborative and Multilingual Approach to Learn Database Topics Using Concept Maps

PubMed Central

Calvo, Iñaki

2014-01-01

Authors report on a study using the concept mapping technique in computer engineering education for learning theoretical introductory database topics. In addition, the learning of multilingual technical terminology by means of the collaborative drawing of a concept map is also pursued in this experiment. The main characteristics of a study carried out in the database subject at the University of the Basque Country during the 2011/2012 course are described. This study contributes to the field of concept mapping as these kinds of cognitive tools have proved to be valid to support learning in computer engineering education. It contributes to the field of computer engineering education, providing a technique that can be incorporated with several educational purposes within the discipline. Results reveal the potential that a collaborative concept map editor offers to fulfil the above mentioned objectives. PMID:25538957

Sequencing of cDNA Clones from the Genetic Map of Tomato (Lycopersicon esculentum)

PubMed Central

Ganal, Martin W.; Czihal, Rosemarie; Hannappel, Ulrich; Kloos, Dorothee-U.; Polley, Andreas; Ling, Hong-Qing

1998-01-01

The dense RFLP linkage map of tomato (Lycopersicon esculentum) contains >300 anonymous cDNA clones. Of those clones, 272 were partially or completely sequenced. The sequences were compared at the DNA and protein level to known genes in databases. For 57% of the clones, a significant match to previously described genes was found. The information will permit the conversion of those markers to STS markers and allow their use in PCR-based mapping experiments. Furthermore, it will facilitate the comparative mapping of genes across distantly related plant species by direct comparison of DNA sequences and map positions. [cDNA sequence data reported in this paper have been submitted to the EMBL database under accession nos. AA824695–AA825005 and the dbEST_Id database under accession nos. 1546519–1546862.] PMID:9724330

Map Your Way to Speech Success! Employing Mind Mapping as a Speech Preparation Technique

ERIC Educational Resources Information Center

Paxman, Christina G.

2011-01-01

Mind mapping has gained considerable credibility recently in corporations such as Boeing and Nabisco, as well as in the classroom in terms of preparing for examinations and preparing for speeches. A mind map is a graphic technique for organizing an individual's thoughts and other information. It harnesses the full range of cortical skills--word,…

HUPO BPP pilot study: a proteomics analysis of the mouse brain of different developmental stages.

PubMed

Wang, Jing; Gu, Yong; Wang, Lihong; Hang, Xingyi; Gao, Yan; Wang, Hangyan; Zhang, Chenggang

2007-11-01

This study is a part of the HUPO Brain Proteome Project (BPP) pilot study, which aims at obtaining a reliable database of mouse brain proteome, at the comparison of techniques, laboratories, and approaches as well as at preparing subsequent proteome studies of neurologic diseases. The C57/Bl6 mouse brains of three developmental stages at embryonic day 16 (E16), postnatal day 7 (P7), and 8 wk (P56) (n = 5 in each group) were provided by the HUPO BPP executive committee. The whole brain proteins of each animal were individually prepared using 2-DE coupled with PDQuest software analysis. The protein spots representing developmentally related or stably expressed proteins were then prepared with in-gel digestion followed with MALDI-TOF/TOF MS/MS and analyzed using the MASCOT search engines to search the Swiss-Prot or NCBInr database. The 2-DE gel maps of the mouse brains of all of the developmental stages were obtained and submitted to the Data Collection Centre (DCC). The proteins alpha-enolase, stathmin, actin, C14orf166 homolog, 28,000 kDa heat- and acid-stable phosphoprotein, 3-mercaptopyruvate sulfurtransferase and 40 S ribosomal protein S3a were successfully identified. A further Western blotting analysis demonstrated that enolase is a protein up-regulated in the mouse brain from embryonic stage to adult stage. These data are helpful for understanding the proteome changes in the development of the mouse brain.

A fully traits-based approach to modeling global vegetation distribution.

PubMed

van Bodegom, Peter M; Douma, Jacob C; Verheijen, Lieneke M

2014-09-23

Dynamic Global Vegetation Models (DGVMs) are indispensable for our understanding of climate change impacts. The application of traits in DGVMs is increasingly refined. However, a comprehensive analysis of the direct impacts of trait variation on global vegetation distribution does not yet exist. Here, we present such analysis as proof of principle. We run regressions of trait observations for leaf mass per area, stem-specific density, and seed mass from a global database against multiple environmental drivers, making use of findings of global trait convergence. This analysis explained up to 52% of the global variation of traits. Global trait maps, generated by coupling the regression equations to gridded soil and climate maps, showed up to orders of magnitude variation in trait values. Subsequently, nine vegetation types were characterized by the trait combinations that they possess using Gaussian mixture density functions. The trait maps were input to these functions to determine global occurrence probabilities for each vegetation type. We prepared vegetation maps, assuming that the most probable (and thus, most suited) vegetation type at each location will be realized. This fully traits-based vegetation map predicted 42% of the observed vegetation distribution correctly. Our results indicate that a major proportion of the predictive ability of DGVMs with respect to vegetation distribution can be attained by three traits alone if traits like stem-specific density and seed mass are included. We envision that our traits-based approach, our observation-driven trait maps, and our vegetation maps may inspire a new generation of powerful traits-based DGVMs.

Efficiently Communicating Rich Heterogeneous Geospatial Data from the FeMO2008 Dive Cruise with FlashMap on EarthRef.org

NASA Astrophysics Data System (ADS)

Minnett, R. C.; Koppers, A. A.; Staudigel, D.; Staudigel, H.

2008-12-01

EarthRef.org is comprehensive and convenient resource for Earth Science reference data and models. It encompasses four main portals: the Geochemical Earth Reference Model (GERM), the Magnetics Information Consortium (MagIC), the Seamount Biogeosciences Network (SBN), and the Enduring Resources for Earth Science Education (ERESE). Their underlying databases are publically available and the scientific community has contributed widely and is urged to continue to do so. However, the net result is a vast and largely heterogeneous warehouse of geospatial data ranging from carefully prepared maps of seamounts to geochemical data/metadata, daily reports from seagoing expeditions, large volumes of raw and processed multibeam data, images of paleomagnetic sampling sites, etc. This presents a considerable obstacle for integrating other rich media content, such as videos, images, data files, cruise tracks, and interoperable database results, without overwhelming the web user. The four EarthRef.org portals clearly lend themselves to a more intuitive user interface and has, therefore, been an invaluable test bed for the design and implementation of FlashMap, a versatile KML-driven geospatial browser written for reliability and speed in Adobe Flash. FlashMap allows layers of content to be loaded and displayed over a streaming high-resolution map which can be zoomed and panned similarly to Google Maps and Google Earth. Many organizations, from National Geographic to the USGS, have begun using Google Earth software to display geospatial content. However, Google Earth, as a desktop application, does not integrate cleanly with existing websites requiring the user to navigate away from the browser and focus on a separate application and Google Maps, written in Java Script, does not scale up reliably to large datasets. FlashMap remedies these problems as a web-based application that allows for seamless integration of the real-time display power of Google Earth and the flexibility of the web without losing scalability and control of the base maps. Our Flash-based application is fully compatible with KML (Keyhole Markup Language) 2.2, the most recent iteration of KML, allowing users with existing Google Earth KML files to effortlessly display their geospatial content embedded in a web page. As a test case for FlashMap, the annual Iron-Oxidizing Microbial Observatory (FeMO) dive cruise to the Loihi Seamount, in conjunction with data available from ongoing and published FeMO laboratory studies, showcases the flexibility of this single web-based application. With a KML 2.2 compatible web-service providing the content, any database can display results in FlashMap. The user can then hide and show multiple layers of content, potentially from several data sources, and rapidly digest a vast quantity of information to narrow the search results. This flexibility gives experienced users the ability to drill down to exactly the record they are looking for (SERC at Carleton College's educational application of FlashMap at http://serc.carleton.edu/sp/erese/activities/22223.html) and allows users familiar with Google Earth the ability to load and view geospatial data content within a browser from any computer with an internet connection.

Managing Rock and Paleomagnetic Data Flow with the MagIC Database: from Measurement and Analysis to Comprehensive Archive and Visualization

NASA Astrophysics Data System (ADS)

Koppers, A. A.; Minnett, R. C.; Tauxe, L.; Constable, C.; Donadini, F.

2008-12-01

The Magnetics Information Consortium (MagIC) is commissioned to implement and maintain an online portal to a relational database populated by rock and paleomagnetic data. The goal of MagIC is to archive all measurements and derived properties for studies of paleomagnetic directions (inclination, declination) and intensities, and for rock magnetic experiments (hysteresis, remanence, susceptibility, anisotropy). Organizing data for presentation in peer-reviewed publications or for ingestion into databases is a time-consuming task, and to facilitate these activities, three tightly integrated tools have been developed: MagIC-PY, the MagIC Console Software, and the MagIC Online Database. A suite of Python scripts is available to help users port their data into the MagIC data format. They allow the user to add important metadata, perform basic interpretations, and average results at the specimen, sample and site levels. These scripts have been validated for use as Open Source software under the UNIX, Linux, PC and Macintosh© operating systems. We have also developed the MagIC Console Software program to assist in collating rock and paleomagnetic data for upload to the MagIC database. The program runs in Microsoft Excel© on both Macintosh© computers and PCs. It performs routine consistency checks on data entries, and assists users in preparing data for uploading into the online MagIC database. The MagIC website is hosted under EarthRef.org at http://earthref.org/MAGIC/ and has two search nodes, one for paleomagnetism and one for rock magnetism. Both nodes provide query building based on location, reference, methods applied, material type and geological age, as well as a visual FlashMap interface to browse and select locations. Users can also browse the database by data type (inclination, intensity, VGP, hysteresis, susceptibility) or by data compilation to view all contributions associated with previous databases, such as PINT, GMPDB or TAFI or other user-defined compilations. Query results are displayed in a digestible tabular format allowing the user to descend from locations to sites, samples, specimens and measurements. At each stage, the result set can be saved and, when supported by the data, can be visualized by plotting global location maps, equal area, XY, age, and depth plots, or typical Zijderveld, hysteresis, magnetization and remanence diagrams.

Researchermap: a tool for visualizing author locations using Google maps.

PubMed

Rastegar-Mojarad, Majid; Bales, Michael E; Yu, Hong

2013-01-01

We hereby present ResearcherMap, a tool to visualize locations of authors of scholarly papers. In response to a query, the system returns a map of author locations. To develop the system we first populated a database of author locations, geocoding institution locations for all available institutional affiliation data in our database. The database includes all authors of Medline papers from 1990 to 2012. We conducted a formative heuristic usability evaluation of the system and measured the system's accuracy and performance. The accuracy of finding the accurate address is 97.5% in our system.

Bedrock geologic map of the Worcester South quadrangle, Worcester County, Massachusetts

USGS Publications Warehouse

Walsh, Gregory J.; Merschat, Arthur J.

2015-09-29

The bedrock geology was mapped to study the tectonic history of the area and to provide a framework for ongoing hydrogeologic characterization of the fractured bedrock of Massachusetts. This report presents mapping by Gregory J. Walsh and Arthur J. Merschat from 2008 to 2010. The report consists of a map and GIS database, both of which are available for download at http://dx.doi.org/ 10.3133/sim3345. The database includes contacts of bedrock geologic units, faults, outcrop locations, structural information, and photographs.

Alaska IPASS database preparation manual.

Treesearch

P. McHugh; D. Olson; C. Schallau

1989-01-01

Describes the data, their sources, and the calibration procedures used in compiling a database for the Alaska IPASS (interactive policy analysis simulation system) model. Although this manual is for Alaska, it provides generic instructions for analysts preparing databases for other geographical areas.

Landslide susceptibility mapping in three selected target zones in Afghanistan

NASA Astrophysics Data System (ADS)

Schwanghart, Wolfgang; Seegers, Joe; Zeilinger, Gerold

2015-04-01

In May 2014, a large and mobile landslide destroyed the village Ab Barek, a village in Badakshan Province, Afghanistan. The landslide caused several hundred fatalities and once again demonstrated the vulnerability of Afghanistan's population to extreme natural events following more than 30 years of civil war and violent conflict. Increasing the capacity of Afghanistan's population by strengthening the disaster preparedness and management of responsible government authorities and institutions is thus a major component of international cooperation and development strategies. Afghanistan is characterized by high relief and widely varying rock types that largely determine the spatial distribution as well as emplacement modes of mass movements. The major aim of our study is to characterize this variability by conducting a landslide susceptibility analysis in three selected target zones: Greater Kabul Area, Badakhshan Province and Takhar Province. We expand on an existing landslide database by mapping landforms diagnostic for landslides (e.g. head scarps, normal faults and tension cracks), and historical landslide scars and landslide deposits by visual interpretation of high-resolution satellite imagery. We conduct magnitude frequency analysis within subregional physiogeographic classes based on geological maps, climatological and topographic data to identify regional parameters influencing landslide magnitude and frequency. In addition, we prepare a landslide susceptibility map for each area using the Weight-of-Evidence model. Preliminary results show that the three selected target zones vastly differ in modes of landsliding. Low magnitude but frequent rockfall events are a major hazard in the Greater Kabul Area threatening buildings and infrastructure encroaching steep terrain in the city's outskirts. Mass movements in loess covered areas of Badakshan are characterized by medium to large magnitudes. This spatial variability of characteristic landslide magnitudes and modes of emplacement necessitates different strategies to assess, mitigate, and prepare for landslides in the three different target zones.

Remote sensing and GIS based information system for sustainable resources planning at Panchayat level

NASA Astrophysics Data System (ADS)

Velmurugan, A.; Bhatt, S.; Dadhwal, V. K.

2006-12-01

Spatial databases of natural resources are very much essential to ensure enhanced productivity by conserving soil and water and to maintain ecological integrity of any region. Integration of various thematic layers prepared from high resolution data and detailed field survey would be preferred for grass root level planning (Panchayat) aimed to realize the potential of production system on a sustained basis. In this study, a detailed spatial data base was created for part of Kasaragod dist., Kerala, India. Detailed soil survey was carried out using cadastral map and registered over high resolution satellite data (IRS LISS-IV) which helped to identify problems and potentials of the area. Nearly 600 ha of land were found to be at higher erosion risk category out of ten soil series identified in the study area. Remote sensing data was used to prepare land use/land cover map and coconut (53%) followed by mixed vegetation type (16%) were found to be dominant. Soil site suitability assessment for major crops of the area was carried out and crossed with present land use to get the mismatch in land use/land utilization type. Alternate land use plan was prepared considering the potentials and problems of various available resources. Decision Support System (DSS) along with user interface is developed to support decision and extract relevant information. As organic carbon is one of the most important indicators of soil fertility C stock in the present and proposed land use was also estimated to understand the environmental significance.

The status of soil mapping for the Idaho National Engineering Laboratory

DOE Office of Scientific and Technical Information (OSTI.GOV)

Olson, G.L.; Lee, R.D.; Jeppesen, D.J.

This report discusses the production of a revised version of the general soil map of the 2304-km{sup 2} (890-mi{sup 2}) Idaho National Engineering Laboratory (INEL) site in southeastern Idaho and the production of a geographic information system (GIS) soil map and supporting database. The revised general soil map replaces an INEL soil map produced in 1978 and incorporates the most current information on INEL soils. The general soil map delineates large soil associations based on National Resources Conservation Services [formerly the Soil Conservation Service (SCS)] principles of soil mapping. The GIS map incorporates detailed information that could not be presentedmore » on the general soil map and is linked to a database that contains the soil map unit descriptions, surficial geology codes, and other pertinent information.« less

RatMap—rat genome tools and data

PubMed Central

Petersen, Greta; Johnson, Per; Andersson, Lars; Klinga-Levan, Karin; Gómez-Fabre, Pedro M.; Ståhl, Fredrik

2005-01-01

The rat genome database RatMap (http://ratmap.org or http://ratmap.gen.gu.se) has been one of the main resources for rat genome information since 1994. The database is maintained by CMB–Genetics at Göteborg University in Sweden and provides information on rat genes, polymorphic rat DNA-markers and rat quantitative trait loci (QTLs), all curated at RatMap. The database is under the supervision of the Rat Gene and Nomenclature Committee (RGNC); thus much attention is paid to rat gene nomenclature. RatMap presents information on rat idiograms, karyotypes and provides a unified presentation of the rat genome sequence and integrated rat linkage maps. A set of tools is also available to facilitate the identification and characterization of rat QTLs, as well as the estimation of exon/intron number and sizes in individual rat genes. Furthermore, comparative gene maps of rat in regard to mouse and human are provided. PMID:15608244

Preliminary Geologic Map of the Buxton 7.5' Quadrangle, Washington County, Oregon

USGS Publications Warehouse

Dinterman, Philip A.; Duvall, Alison R.

2009-01-01

This map, compiled from previously published and unpublished data, and new mapping by the authors, represents the general distribution of bedrock and surficial deposits of the Buxton 7.5-minute quadrangle. The database delineates map units that are identified by general age and lithology following the stratigraphic nomenclature of the U.S. Geological Survey. The scale of the source maps limits the spatial resolution (scale) of the database to 1:24,000 or smaller. This plot file and accompanying database depict the distribution of geologic materials and structures at a regional (1:24,000) scale. The report is intended to provide geologic information for the regional study of materials properties, earthquake shaking, landslide potential, mineral hazards, seismic velocity, and earthquake faults. In addition, the report contains new information and interpretations about the regional geologic history and framework. However, the regional scale of this report does not provide sufficient detail for site development purposes.

The Lichen-GIS Project, Teaching Students How to Use Bioindicator Species to Assess Environmental Quality.

PubMed

Wagner, Stephen C; McDonald, Darrel; Watson, Trey; Taylor, Josephine; Sowards, Alan B

2009-01-01

A content-driven biology course for preservice K-8 teachers has been developed. This course uses the constructivist approach, where instructors engage students by organizing information around concept-based problems. To this end, a semester-long, inquiry-based project was introduced where students studied lichen populations on trees located on their campus to monitor air quality. Data were incorporated into a geographical information systems (GIS) database to demonstrate how it can be used to map communities. Student teams counted the number of each lichen type within a grid placed on each tree trunk sampled and entered this information into a GIS database. The students constructed maps of lichen populations at each sample site and wrote abstracts about their research. Student performance was assessed by the preparation of these abstracts as well as by scores on pre- and posttests of key content measures. Students also completed a survey to determine whether the project aided in their comprehension as well as their interest in incorporating this activity into their own curricula. The students' pre- and posttest results showed an eightfold improvement in the total score after the semester project. Additionally, correct responses to each individual content measure increased by at least 35%. Total scores for the abstract ranged from 12 to 20 points out of 20 total points possible (60% to 100%), with a mean score of 15.8 points (78%). These results indicate that this exercise provided an excellent vehicle to teach students about lichens and their use as bioindicators and the application of geospatial technologies to map environmental data.

Scoping of flood hazard mapping needs for Kennebec County, Maine

USGS Publications Warehouse

Dudley, Robert W.; Schalk, Charles W.

2006-01-01

This report was prepared by the U.S. Geological Survey (USGS) Maine Water Science Center as the deliverable for scoping of flood hazard mapping needs for Kennebec County, Maine, under Federal Emergency Management Agency (FEMA) Inter-Agency Agreement Number HSFE01-05-X-0018. This section of the report explains the objective of the task and the purpose of the report. The Federal Emergency Management Agency (FEMA) developed a plan in 1997 to modernize the FEMA flood mapping program. FEMA flood maps delineate flood hazard areas in support of the National Flood Insurance Program (NFIP). FEMA's plan outlined the steps necessary to update FEMA's flood maps for the nation to a seamless digital format and streamline FEMA's operations in raising public awareness of the importance of the maps and responding to requests to revise them. The modernization of flood maps involves conversion of existing information to digital format and integration of improved flood hazard data as needed. To determine flood mapping modernization needs, FEMA has established specific scoping activities to be done on a county-by-county basis for identifying and prioritizing requisite flood-mapping activities for map modernization. The U.S. Geological Survey (USGS), in cooperation with FEMA and the Maine State Planning Office Floodplain Management Program, began scoping work in 2005 for Kennebec County. Scoping activities included assembling existing data and map needs information for communities in Kennebec County (efforts were made to not duplicate those of pre-scoping completed in March 2005), documentation of data, contacts, community meetings, and prioritized mapping needs in a final scoping report (this document), and updating the Mapping Needs Update Support System (MNUSS) Database or its successor with information gathered during the scoping process. The average age of the FEMA floodplain maps in Kennebec County, Maine is 16 years. Most of these studies were in the late 1970's to the mid 1980s. However, in the ensuing 20-30 years, development has occurred in many of the watersheds, and the characteristics of the watersheds have changed with time. Therefore, many of the older studies may not depict current conditions nor accurately estimate risk in terms of flood heights. The following is the scope of work as defined in the FEMA/USGS Statement of Work: Task 1: Collect data from a variety of sources including community surveys, other Federal and State Agencies, National Flood Insurance Program (NFIP) State Coordinators, Community Assistance Visits (CAVs) and FEMA archives. Lists of mapping needs will be obtained from the MNUSS database, community surveys, and CAVs, if available. FEMA archives will be inventoried for effective FIRM panels, FIS reports, and other flood-hazard data or existing study data. Best available base map information, topographic data, flood-hazard data, and hydrologic and hydraulic data will be identified. Data from the Maine Floodplain Management Program database also will be utilized. Task 2: Contact communities in Kennebec County to notify them that FEMA and the State have selected them for a map update, and that a project scope will be developed with their input. Topics to be reviewed with the communities include (1) Purpose of the Flood Map Project (for example, the update needs that have prompted the map update); (2) The community's mapping needs; (3) The community's available mapping, hydrologic, hydraulic, and flooding information; (4) target schedule for completing the project; and (5) The community's engineering, planning, and geographic information system (GIS) capabilities. On the basis of the collected information from Task 1 and community contacts/meetings in Task 2, the USGS will develop a Draft Project Scope for the identified mapping needs of the communities in Kennebec County. The following items will be addressed in the Draft Project Scope: review of available information, determine if and how e

Scoping of flood hazard mapping needs for Somerset County, Maine

USGS Publications Warehouse

Dudley, Robert W.; Schalk, Charles W.

2006-01-01

This report was prepared by the U.S. Geological Survey (USGS) Maine Water Science Center as the deliverable for scoping of flood hazard mapping needs for Somerset County, Maine, under Federal Emergency Management Agency (FEMA) Inter-Agency Agreement Number HSFE01-05-X-0018. This section of the report explains the objective of the task and the purpose of the report. The Federal Emergency Management Agency (FEMA) developed a plan in 1997 to modernize the FEMA flood mapping program. FEMA flood maps delineate flood hazard areas in support of the National Flood Insurance Program (NFIP). FEMA's plan outlined the steps necessary to update FEMA's flood maps for the nation to a seamless digital format and streamline FEMA's operations in raising public awareness of the importance of the maps and responding to requests to revise them. The modernization of flood maps involves conversion of existing information to digital format and integration of improved flood hazard data as needed. To determine flood mapping modernization needs, FEMA has established specific scoping activities to be done on a county-by-county basis for identifying and prioritizing requisite flood-mapping activities for map modernization. The U.S. Geological Survey (USGS), in cooperation with FEMA and the Maine State Planning Office Floodplain Management Program, began scoping work in 2005 for Somerset County. Scoping activities included assembling existing data and map needs information for communities in Somerset County (efforts were made to not duplicate those of pre-scoping completed in March 2005), documentation of data, contacts, community meetings, and prioritized mapping needs in a final scoping report (this document), and updating the Mapping Needs Update Support System (MNUSS) Database or its successor with information gathered during the scoping process. The average age of the FEMA floodplain maps in Somerset County, Maine is 18.1 years. Most of these studies were in the late 1970's to the mid 1980s. However, in the ensuing 20-30 years, development has occurred in many of the watersheds, and the characteristics of the watersheds have changed with time. Therefore, many of the older studies may not depict current conditions nor accurately estimate risk in terms of flood heights. The following is the scope of work as defined in the FEMA/USGS Statement of Work: Task 1: Collect data from a variety of sources including community surveys, other Federal and State Agencies, National Flood Insurance Program (NFIP) State Coordinators, Community Assistance Visits (CAVs) and FEMA archives. Lists of mapping needs will be obtained from the MNUSS database, community surveys, and CAVs, if available. FEMA archives will be inventoried for effective FIRM panels, FIS reports, and other flood-hazard data or existing study data. Best available base map information, topographic data, flood-hazard data, and hydrologic and hydraulic data will be identified. Data from the Maine Floodplain Management Program database also will be utilized. Task 2: Contact communities in Somerset County to notify them that FEMA and the State have selected them for a map update, and that a project scope will be developed with their input. Topics to be reviewed with the communities include (1) Purpose of the Flood Map Project (for example, the update needs that have prompted the map update); (2) The community's mapping needs; (3) The community's available mapping, hydrologic, hydraulic, and flooding information; (4) target schedule for completing the project; and (5) The community's engineering, planning, and geographic information system (GIS) capabilities. On the basis of the collected information from Task 1 and community contacts/meetings in Task 2, the USGS will develop a Draft Project Scope for the identified mapping needs of the communities in Somerset County. The following items will be addressed in the Draft Project Scope: review of available information, determine if and ho

Scoping of flood hazard mapping needs for Cumberland County, Maine

USGS Publications Warehouse

Dudley, Robert W.; Schalk, Charles W.

2006-01-01

This report was prepared by the U.S. Geological Survey (USGS) Maine Water Science Center as the deliverable for scoping of flood hazard mapping needs for Cumberland County, Maine, under Federal Emergency Management Agency (FEMA) Inter-Agency Agreement Number HSFE01-05-X-0018. This section of the report explains the objective of the task and the purpose of the report. The Federal Emergency Management Agency (FEMA) developed a plan in 1997 to modernize the FEMA flood mapping program. FEMA flood maps delineate flood hazard areas in support of the National Flood Insurance Program (NFIP). FEMA's plan outlined the steps necessary to update FEMA's flood maps for the nation to a seamless digital format and streamline FEMA's operations in raising public awareness of the importance of the maps and responding to requests to revise them. The modernization of flood maps involves conversion of existing information to digital format and integration of improved flood hazard data as needed. To determine flood mapping modernization needs, FEMA has established specific scoping activities to be done on a county-by-county basis for identifying and prioritizing requisite flood-mapping activities for map modernization. The U.S. Geological Survey (USGS), in cooperation with FEMA and the Maine State Planning Office Floodplain Management Program, began scoping work in 2005 for Cumberland County. Scoping activities included assembling existing data and map needs information for communities in Cumberland County, documentation of data, contacts, community meetings, and prioritized mapping needs in a final scoping report (this document), and updating the Mapping Needs Update Support System (MNUSS) Database or its successor with information gathered during the scoping process. The average age of the FEMA floodplain maps in Cumberland County, Maine is 21 years. Most of these studies were in the early to mid 1980s. However, in the ensuing 20-25 years, development has occurred in many of the watersheds, and the characteristics of the watersheds have changed with time. Therefore, many of the older studies may not depict current conditions nor accurately estimate risk in terms of flood heights. The following is the scope of work as defined in the FEMA/USGS Statement of Work: Task 1: Collect data from a variety of sources including community surveys, other Federal and State Agencies, National Flood Insurance Program (NFIP) State Coordinators, Community Assistance Visits (CAVs) and FEMA archives. Lists of mapping needs will be obtained from the MNUSS database, community surveys, and CAVs, if available. FEMA archives will be inventoried for effective FIRM panels, FIS reports, and other flood-hazard data or existing study data. Best available base map information, topographic data, flood-hazard data, and hydrologic and hydraulic data will be identified. Data from the Maine Floodplain Management Program database also will be utilized. Task 2: Contact communities in Cumberland County to notify them that FEMA and the State have selected them for a map update, and that a project scope will be developed with their input. Topics to be reviewed with the communities include (1) Purpose of the Flood Map Project (for example, the update needs that have prompted the map update); (2) The community's mapping needs; (3) The community's available mapping, hydrologic, hydraulic, and flooding information; (4) target schedule for completing the project; and (5) The community's engineering, planning, and geographic information system (GIS) capabilities. On the basis of the collected information from Task 1 and community contacts/meetings in Task 2, the USGS will develop a Draft Project Scope for the identified mapping needs of the communities in Cumberland County. The following items will be addressed in the Draft Project Scope: review of available information, determine if and how effective FIS data can be used in new project, and identify other data needed to

Geologic and structure map of the Choteau 1 degree by 2 degrees Quadrangle, western Montana

USGS Publications Warehouse

Mudge, Melville R.; Earhart, Robert L.; Whipple, James W.; Harrison, Jack E.

1982-01-01

The geologic and structure map of Choteau 1 x 2 degree quadrangle (Mudge and others, 1982) was originally converted to a digital format by Jeff Silkwood (U.S. Forest Service and completed by the U.S. Geological Survey staff and contractor at the Spokane Field Office (WA) in 2000 for input into a geographic information system (GIS). The resulting digital geologic map (GIS) database can be queried in many ways to produce a variey of geologic maps. Digital base map data files (topography, roads, towns, rivers and lakes, etc.) are not included: they may be obtained from a variety of commercial and government sources. This database is not meant to be used or displayed at any scale larger than 1:250,000 (e.g. 1:100,000 or 1:24,000. The digital geologic map graphics and plot files (chot250k.gra/.hp/.eps and chot-map.pdf) that are provided in the digital package are representations of the digital database. They are not designed to be cartographic products.

Earth Resources Technology Satellite data collection project, ERTS - Bolivia. [thematic mapping

NASA Technical Reports Server (NTRS)

Brockmann, C. E.

1974-01-01

The Earth Resources Technology Satellite program of Bolivia has developed a multidisciplinary project to carry out investigations in cartography and to prepare various thematic maps. In cartography, investigations are being carried out with the ERTS-1 images and with existing maps, to determine their application to the preparation of new cartographic products on one hand and on the other to map those regions where the cartography is still deficient. The application of the MSS images to the geological mapping has given more than satisfactory results. Working with conventional photointerpretation, it has been possible to prepare regional geological maps, tectonic maps, studies relative to mining, geomorphological maps, studies relative to petroleum exploration, volcanological maps and maps of hydrologic basins. In agriculture, the ERTS images are used to study land classification and forest and soils mapping.

A generic method for improving the spatial interoperability of medical and ecological databases.

PubMed

Ghenassia, A; Beuscart, J B; Ficheur, G; Occelli, F; Babykina, E; Chazard, E; Genin, M

2017-10-03

The availability of big data in healthcare and the intensive development of data reuse and georeferencing have opened up perspectives for health spatial analysis. However, fine-scale spatial studies of ecological and medical databases are limited by the change of support problem and thus a lack of spatial unit interoperability. The use of spatial disaggregation methods to solve this problem introduces errors into the spatial estimations. Here, we present a generic, two-step method for merging medical and ecological databases that avoids the use of spatial disaggregation methods, while maximizing the spatial resolution. Firstly, a mapping table is created after one or more transition matrices have been defined. The latter link the spatial units of the original databases to the spatial units of the final database. Secondly, the mapping table is validated by (1) comparing the covariates contained in the two original databases, and (2) checking the spatial validity with a spatial continuity criterion and a spatial resolution index. We used our novel method to merge a medical database (the French national diagnosis-related group database, containing 5644 spatial units) with an ecological database (produced by the French National Institute of Statistics and Economic Studies, and containing with 36,594 spatial units). The mapping table yielded 5632 final spatial units. The mapping table's validity was evaluated by comparing the number of births in the medical database and the ecological databases in each final spatial unit. The median [interquartile range] relative difference was 2.3% [0; 5.7]. The spatial continuity criterion was low (2.4%), and the spatial resolution index was greater than for most French administrative areas. Our innovative approach improves interoperability between medical and ecological databases and facilitates fine-scale spatial analyses. We have shown that disaggregation models and large aggregation techniques are not necessarily the best ways to tackle the change of support problem.

Semantic mediation in the national geologic map database (US)

USGS Publications Warehouse

Percy, D.; Richard, S.; Soller, D.

2008-01-01

Controlled language is the primary challenge in merging heterogeneous databases of geologic information. Each agency or organization produces databases with different schema, and different terminology for describing the objects within. In order to make some progress toward merging these databases using current technology, we have developed software and a workflow that allows for the "manual semantic mediation" of these geologic map databases. Enthusiastic support from many state agencies (stakeholders and data stewards) has shown that the community supports this approach. Future implementations will move toward a more Artificial Intelligence-based approach, using expert-systems or knowledge-bases to process data based on the training sets we have developed manually.

Database and Map of Quaternary Faults and Folds in Peru and its Offshore Region

USGS Publications Warehouse

Machare, Jose; Fenton, Clark H.; Machette, Michael N.; Lavenu, Alain; Costa, Carlos; Dart, Richard L.

2003-01-01

This publication consists of a main map of Quaternary faults and fiolds of Peru, a table of Quaternary fault data, a region inset map showing relative plate motion, and a second inset map of an enlarged area of interest in southern Peru. These maps and data compilation show evidence for activity of Quaternary faults and folds in Peru and its offshore regions of the Pacific Ocean. The maps show the locations, ages, and activity rates of major earthquake-related features such as faults and fault-related folds. These data are accompanied by text databases that describe these features and document current information on their activity in the Quaternary.

Updating road databases from shape-files using aerial images

NASA Astrophysics Data System (ADS)

Häufel, Gisela; Bulatov, Dimitri; Pohl, Melanie

2015-10-01

Road databases are an important part of geo data infrastructure. The knowledge about their characteristics and course is essential for urban planning, navigation or evacuation tasks. Starting from OpenStreetMap (OSM) shape-file data for street networks, we introduce an algorithm to enrich these available road maps by new maps which are based on other airborne sensor technology. In our case, these are results of our context-based urban terrain reconstruction process. We wish to enhance the use of road databases by computing additional junctions, narrow passages and other items which may emerge due to changes in the terrain. This is relevant for various military and civil applications.

The U.S. Geological Survey mapping and cartographic database activities, 2006-2010

USGS Publications Warehouse

Craun, Kari J.; Donnelly, John P.; Allord, Gregory J.

2011-01-01

The U.S. Geological Survey (USGS) began systematic topographic mapping of the United States in the 1880s, beginning with scales of 1:250,000 and 1:125,000 in support of geological mapping. Responding to the need for higher resolution and more detail, the 1:62,500-scale, 15-minute, topographic map series was begun in the beginning of the 20th century. Finally, in the 1950s the USGS adopted the 1:24,000-scale, 7.5-minute topographic map series to portray even more detail, completing the coverage of the conterminous 48 states of the United States with this series in 1992. In 2001, the USGS developed the vision and concept of The National Map, a topographic database for the 21st century and the source for a new generation of topographic maps (http://nationalmap.gov/). In 2008, the initial production of those maps began with a 1:24,000-scale digital product. In a separate, but related project, the USGS began scanning the existing inventory of historical topographic maps at all scales to accompany the new topographic maps. The USGS also had developed a digital database of The National Atlas of the United States. The digital version of Atlas is now Web-available and supports a mapping engine for small scale maps of the United States and North America. These three efforts define topographic mapping activities of the USGS during the last few years and are discussed below.

Ridge 2000 Data Management System

NASA Astrophysics Data System (ADS)

Goodwillie, A. M.; Carbotte, S. M.; Arko, R. A.; Haxby, W. F.; Ryan, W. B.; Chayes, D. N.; Lehnert, K. A.; Shank, T. M.

2005-12-01

Hosted at Lamont by the marine geoscience Data Management group, mgDMS, the NSF-funded Ridge 2000 electronic database, http://www.marine-geo.org/ridge2000/, is a key component of the Ridge 2000 multi-disciplinary program. The database covers each of the three Ridge 2000 Integrated Study Sites: Endeavour Segment, Lau Basin, and 8-11N Segment. It promotes the sharing of information to the broader community, facilitates integration of the suite of information collected at each study site, and enables comparisons between sites. The Ridge 2000 data system provides easy web access to a relational database that is built around a catalogue of cruise metadata. Any web browser can be used to perform a versatile text-based search which returns basic cruise and submersible dive information, sample and data inventories, navigation, and other relevant metadata such as shipboard personnel and links to NSF program awards. In addition, non-proprietary data files, images, and derived products which are hosted locally or in national repositories, as well as science and technical reports, can be freely downloaded. On the Ridge 2000 database page, our Data Link allows users to search the database using a broad range of parameters including data type, cruise ID, chief scientist, geographical location. The first Ridge 2000 field programs sailed in 2004 and, in addition to numerous data sets collected prior to the Ridge 2000 program, the database currently contains information on fifteen Ridge 2000-funded cruises and almost sixty Alvin dives. Track lines can be viewed using a recently- implemented Web Map Service button labelled Map View. The Ridge 2000 database is fully integrated with databases hosted by the mgDMS group for MARGINS and the Antarctic multibeam and seismic reflection data initiatives. Links are provided to partner databases including PetDB, SIOExplorer, and the ODP Janus system. Improved inter-operability with existing and new partner repositories continues to be strengthened. One major effort involves the gradual unification of the metadata across these partner databases. Standardised electronic metadata forms that can be filled in at sea are available from our web site. Interactive map-based exploration and visualisation of the Ridge 2000 database is provided by GeoMapApp, a freely-available Java(tm) application being developed within the mgDMS group. GeoMapApp includes high-resolution bathymetric grids for the 8-11N EPR segment and allows customised maps and grids for any of the Ridge 2000 ISS to be created. Vent and instrument locations can be plotted and saved as images, and Alvin dive photos are also available.

Documentation & Condition Mapping for Restoration & Revitalisation of Historic Sheesh Mahal & Char Bagh Complex in Patiala (punjab), India

NASA Astrophysics Data System (ADS)

Dasgupta, S.

2017-08-01

Located in the Northern State of Punjab, the historic city of Patiala has always been a centre of culture in north India, and has seen the evolution of its own distinct style of architecture with Rajput and Mughal influences. The city is renowned for its rich architectural heritage, Music, Craft, Sports and Cuisine. The fourth Maharaja Narinder Singh was a great patron of art, architecture and music and it was during his time that several palaces like the Moti Bagh Palace, Sheesh Mahal and Banasur Bagh were designed followed by Baradari Palace. Later it was Maharaja Bhupinder Singh (1900-1938) who made Patiala State famous with his lavish lifestyle.This paper describes the process followed for Documentation and condition assessment of the historic Sheesh Mahal & Char Bagh Complex in order to restore and revitalise the palace building and the Mughal garden. The exercise included Archival research, Field surveys, Condition Mapping, inventories using traditional methods as well as GIS and preparation of restoration & conservation solutions along with post conservation management manual. The Major challenges encountered were identifying the correct documentation methodology for mapping as well as managing the large database generated on site. The Documentation and Mapping was used as a significant tool to guide towards the conservation and Management strategy of the complex.

Digital map databases in support of avionic display systems

NASA Astrophysics Data System (ADS)

Trenchard, Michael E.; Lohrenz, Maura C.; Rosche, Henry, III; Wischow, Perry B.

1991-08-01

The emergence of computerized mission planning systems (MPS) and airborne digital moving map systems (DMS) has necessitated the development of a global database of raster aeronautical chart data specifically designed for input to these systems. The Naval Oceanographic and Atmospheric Research Laboratory''s (NOARL) Map Data Formatting Facility (MDFF) is presently dedicated to supporting these avionic display systems with the development of the Compressed Aeronautical Chart (CAC) database on Compact Disk Read Only Memory (CDROM) optical discs. The MDFF is also developing a series of aircraft-specific Write-Once Read Many (WORM) optical discs. NOARL has initiated a comprehensive research program aimed at improving the pilots'' moving map displays current research efforts include the development of an alternate image compression technique and generation of a standard set of color palettes. The CAC database will provide digital aeronautical chart data in six different scales. CAC is derived from the Defense Mapping Agency''s (DMA) Equal Arc-second (ARC) Digitized Raster Graphics (ADRG) a series of scanned aeronautical charts. NOARL processes ADRG to tailor the chart image resolution to that of the DMS display while reducing storage requirements through image compression techniques. CAC is being distributed by DMA as a library of CDROMs.

Integrated assessment of socio-economic risks of dangerous hydrological phenomena in Russian coastal zones of the Baltic, the Azov and the Black Seas

NASA Astrophysics Data System (ADS)

Zemtsov, Stepan; Baburin, Vyacheslav; Goryachko, Mariya; Krylenko, Inna; Yumina, Natalya

2013-04-01

In 2012, an integrated damage from floods in Russia was about 1 billion euros, floods have caused the death of over 200 people. It is one of the most pressing scientific topics, but most of the works devoted to natural risks assessment. The main purpose of this work is to estimate the influence of dangerous hydrological phenomena (e.g. floods, underflooding and surges) on society, using vulnerability and damage assessment techniques. The objectives are to examine domestic and foreign methodologies, to integrate them and to test on specific Russian territory. Foreign training was organized at UNU-EHS (Bonn, Germany). Three different methods were used for each stage of research. The first part of the research was devoted to estimation of potential damage for population and economy of the Baltic Sea coastal zones. The authors used a model, which takes into account direct damage (loss of life, destruction of buildings, etc.) as well as indirect effects of the first, second, etc. orders (loss of profits, loss of the budget, etc.). A database, based on satellite images, maps, yearbooks of Russian Statistical Service and reports of entities, has been prepared. The database is a matrix, in which the rows are coastal zones, and the columns are given indicators: number of people in port areas (people), cost of fixed assets (million rubles), investment (million rubles.), revenue / profit (million rubles.), etc. The authors identified zones with different depth of flooding, using satellite images, and calculated the direct and indirect costs, using the methodology of EMERCOM. Maximum direct potential damage for the Baltic coast is about 15,7 billion euros, but indirect damage is more than 25,5 billion euros. The second part of research was devoted to vulnerability assessment of coastal municipalities of Krasnodar Region. A database, as a matrix of 252 parameters from 2007 to 2009 for 14 coastal municipalities, was developed. The parameters were divided into several blocks according to UNU-EHS methodology: 'exposure' and 'vulnerability', consisting of 'susceptibility', 'coping capacity' and 'adaptive capacity'. Relevant indicators for each block were selected and verified by statistical methods. The authors estimated the share of people potentially exposed to flooding with the help of geographic information system. The authors, using the technique of World Risk Index (2011), calculated sub-indices for each block, and made the maps. Areas with the highest socio-economic risks were identified on the Azov and the Black sea coast: Slavyansky, Krymsky, Krasnoarmeysky, Temryuksky and Primorsko-Akhtarsky municipal districts. On the third stage, the main purpose was to integrate and use both approaches in evaluation of socio-economic risks on micro-geographical level for different categories of the population and different industries (agriculture, utilities, etc.), using 'field' data. Field study was conducted in Slavyansky municipal district of Krasnodar region and included opinion polls, special interviews with businessmen and authorities, collection of municipal statistics and data from companies, etc. Vulnerability maps, speed evacuation maps, maps of possible locations of warning systems and maps of high insurance risks were developed. Proposals for improvement of legislation for coastal zones were prepared. The conducted research has shown the importance of both social ('vulnerability'), and economic ('damage') components of risk assessment. Using the previously discussed methods individually does not bring desired results because of deficiencies of Russian statistics. It is essential for accurate risk assessment to use an 'ensemble' of methods (statistical, field observations, etc.) on micro geographic level. The work has a practical importance for improving safety of local communities.

Database and online map service on unstable rock slopes in Norway - From data perpetuation to public information

NASA Astrophysics Data System (ADS)

Oppikofer, Thierry; Nordahl, Bobo; Bunkholt, Halvor; Nicolaisen, Magnus; Jarna, Alexandra; Iversen, Sverre; Hermanns, Reginald L.; Böhme, Martina; Yugsi Molina, Freddy X.

2015-11-01

The unstable rock slope database is developed and maintained by the Geological Survey of Norway as part of the systematic mapping of unstable rock slopes in Norway. This mapping aims to detect catastrophic rock slope failures before they occur. More than 250 unstable slopes with post-glacial deformation are detected up to now. The main aims of the unstable rock slope database are (1) to serve as a national archive for unstable rock slopes in Norway; (2) to serve for data collection and storage during field mapping; (3) to provide decision-makers with hazard zones and other necessary information on unstable rock slopes for land-use planning and mitigation; and (4) to inform the public through an online map service. The database is organized hierarchically with a main point for each unstable rock slope to which several feature classes and tables are linked. This main point feature class includes several general attributes of the unstable rock slopes, such as site name, general and geological descriptions, executed works, recommendations, technical parameters (volume, lithology, mechanism and others), displacement rates, possible consequences, as well as hazard and risk classification. Feature classes and tables linked to the main feature class include different scenarios of an unstable rock slope, field observation points, sampling points for dating, displacement measurement stations, lineaments, unstable areas, run-out areas, areas affected by secondary effects, along with tables for hazard and risk classification and URL links to further documentation and references. The database on unstable rock slopes in Norway will be publicly consultable through an online map service. Factsheets with key information on unstable rock slopes can be automatically generated and downloaded for each site. Areas of possible rock avalanche run-out and their secondary effects displayed in the online map service, along with hazard and risk assessments, will become important tools for land-use planning. The present database will further evolve in the coming years as the systematic mapping progresses and as available techniques and tools evolve.

[Survey of Literature on the Development of an Evidence Database for Hospital-prepared Drugs in Japan].

PubMed

Momo, Kenji

2018-01-01

　Hospital-prepared drugs (HP), known as In'Naiseizai in Japan, are custom-prepared formulations which offer medical professionals an alternative administration pathway by changing the formulation of existing drugs according to a patients' needs. Preparing the HP is one of several roles of pharmacists in providing personalized medicine at hospitals in Japan. In 2012, the Japanese Society of Hospital Pharmacists provided guidelines for the appropriate use of "Hospital-prepared drugs". The following information was included in this guide: 1) documentation of the proper procedures, materials, prescription practices, etc., 2) required approval from the institutional review board of each HP on the risk-based classifications, and 3) to assess the stability, efficacy, and safety of each HP. However, several problems persist for pharmacists trying to prepare or use HP appropriately; the most common is insufficient manpower to both assess and prepare these drugs during routine hospital work. To resolve this problem, we are developing an evidence database for HP based on surveys of the current literature. This database has been developed for 109 drugs to date. Data-driven assessment of the stability of HP showed that 52 out of 109 drugs examined (47.7%). Notably, only 6 of the 109 HP (5.5%) in the database had all three characteristics of "stability", "safety", and "efficacy". In conclusion, the application of this database will save manpower hours for hospital pharmacists in the preparation of HP. In the near future, we will make this database available to the wider medical community via the web or through literature.

Rationale and operational plan to upgrade the U.S. gravity database

USGS Publications Warehouse

Hildenbrand, Thomas G.; Briesacher, Allen; Flanagan, Guy; Hinze, William J.; Hittelman, A.M.; Keller, Gordon R.; Kucks, R.P.; Plouff, Donald; Roest, Walter; Seeley, John; Stith, David A.; Webring, Mike

2002-01-01

A concerted effort is underway to prepare a substantially upgraded digital gravity anomaly database for the United States and to make this data set and associated usage tools available on the internet. This joint effort, spearheaded by the geophysics groups at the National Imagery and Mapping Agency (NIMA), University of Texas at El Paso (UTEP), U.S. Geological Survey (USGS), and National Oceanic and Atmospheric Administration (NOAA), is an outgrowth of the new geoscientific community initiative called Geoinformatics (www.geoinformaticsnetwork.org). This dominantly geospatial initiative reflects the realization by Earth scientists that existing information systems and techniques are inadequate to address the many complex scientific and societal issues. Currently, inadequate standardization and chaotic distribution of geoscience data, inadequate accompanying documentation, and the lack of easy-to-use access tools and computer codes for analysis are major obstacles for scientists, government agencies, and educators. An example of the type of activities envisioned, within the context of Geoinformatics, is the construction, maintenance, and growth of a public domain gravity database and development of the software tools needed to access, implement, and expand it. This product is far more than a high quality database; it is a complete data system for a specific type of geophysical measurement that includes, for example, tools to manipulate the data and tutorials to understand and properly utilize the data. On August 9, 2002, twenty-one scientists from the federal, private and academic sectors met at a workshop to discuss the rationale for upgrading both the United States and North American gravity databases (including offshore regions) and, more importantly, to begin developing an operational plan to effectively create a new gravity data system. We encourage anyone interested in contributing data or participating in this effort to contact G.R. Keller or T.G. Hildenbrand. This workshop was the first step in building a web-based data system for sharing quality gravity data and methodology, and it builds on existing collaborative efforts. This compilation effort will result in significant additions to and major refinement of the U.S. database that is currently released publicly by NOAA’s National Geophysical Data Center and will also include an additional objective to substantially upgrade the North American database, released over 15 years ago (Committee for the Gravity Anomaly Map of North America, 1987).

Geologic Map of the Yukon-Koyukuk Basin, Alaska

USGS Publications Warehouse

Patton, William W.; Wilson, Frederic H.; Labay, Keith A.; Shew, Nora B.

2009-01-01

This map and accompanying digital files represent part of a systematic effort to release geologic data for the United States in a uniform manner. All the geologic data in this series will be published as parts of the U.S. Geological Survey Data Series. The geologic data in this series have been compiled from a wide variety of sources, ranging from state and regional geologic maps to large-scale field mapping. The data are presented for use at a nominal scale of 1:500,000, although individual datasets may contain data suitable for use at larger scales. The metadata associated with each release will provide more detailed information on sources and appropriate scales for use. Associated attribute databases accompany the spatial database of the geology and are uniformly structured for ease in developing regional- and national-scale maps. The 1:500,000-scale geologic map of the Yukon-Koyukuk Basin, Alaska, covers more than 200,000 square kilometers of western Alaska or nearly 15 percent of the total land area of the state. It stretches from the Brooks Range on the north to the Kuskokwim River and lower reaches of the Yukon River on the south and from Kotzebue Sound, Seward Peninsula, and Norton Sound on the west to the Yukon-Tanana Uplands and Tanana-Kuskokwim Lowlands on the east. It includes not only the northern and central part of the basin, but also the lands that border the basin. The area is characterized by isolated clusters of hills and low mountain ranges separated by broad alluviated interior and coastal lowlands. Most of the lowlands, except those bordering Kotzebue Sound and Norton Sound, support a heavy vegetation cover. Exposures of bedrock are generally limited to rubble-strewn ridgetops and to cutbanks along the rivers. The map of the Yukon-Koyukuk Basin was prepared largely from geologic field data collected between 1953 and 1988 by the U.S. Geological Survey and published as 1:250,000-scale geologic quadrangle maps. Additional data for parts of the Wiseman, Ruby, Medfra, and Ophir quadrangles came from 1:63,360-scale quadrangle maps published by the Alaska Division of Geological and Geophysical Surveys. The map also incorporates some unpublished field data for the Ruby quadrangle collected by R.M. Chapman between 1944 and 1977 and for parts of the Tanana, Bettles, Norton Bay, and Candle quadrangles collected by W.W. Patton, Jr. and others between 1954 and 1985. Sources of geologic map data for each of the eighteen 1:250,000-scale quadrangles used in compiling this 1:500,000-scale map of the Yukon-Koyukuk Basin as well as sources of general geologic information pertaining to the entire map area are provided in the 'Sources of Information' section.

The Iranian National Geodata Revision Strategy and Realization Based on Geodatabase

NASA Astrophysics Data System (ADS)

Haeri, M.; Fasihi, A.; Ayazi, S. M.

2012-07-01

In recent years, using of spatial database for storing and managing spatial data has become a hot topic in the field of GIS. Accordingly National Cartographic Center of Iran (NCC) produces - from time to time - some spatial data which is usually included in some databases. One of the NCC major projects was designing National Topographic Database (NTDB). NCC decided to create National Topographic Database of the entire country-based on 1:25000 coverage maps. The standard of NTDB was published in 1994 and its database was created at the same time. In NTDB geometric data was stored in MicroStation design format (DGN) which each feature has a link to its attribute data (stored in Microsoft Access file). Also NTDB file was produced in a sheet-wise mode and then stored in a file-based style. Besides map compilation, revision of existing maps has already been started. Key problems of NCC are revision strategy, NTDB file-based style storage and operator challenges (NCC operators are almost preferred to edit and revise geometry data in CAD environments). A GeoDatabase solution for national Geodata, based on NTDB map files and operators' revision preferences, is introduced and released herein. The proposed solution extends the traditional methods to have a seamless spatial database which it can be revised in CAD and GIS environment, simultaneously. The proposed system is the common data framework to create a central data repository for spatial data storage and management.

Thematic Accuracy Assessment of the 2011 National Land Cover Database (NLCD)

EPA Science Inventory

Accuracy assessment is a standard protocol of National Land Cover Database (NLCD) mapping. Here we report agreement statistics between map and reference labels for NLCD 2011, which includes land cover for ca. 2001, ca. 2006, and ca. 2011. The two main objectives were assessment o...

APPLICATION OF A "VITURAL FIELD REFERENCE DATABASE" TO ASSESS LAND-COVER MAP ACCURACIES

EPA Science Inventory

An accuracy assessment was performed for the Neuse River Basin, NC land-cover/use
(LCLU) mapping results using a "Virtual Field Reference Database (VFRDB)". The VFRDB was developed using field measurement and digital imagery (camera) data collected at 1,409 sites over a perio...

Automated Database Mediation Using Ontological Metadata Mappings

PubMed Central

Marenco, Luis; Wang, Rixin; Nadkarni, Prakash

2009-01-01

Objective To devise an automated approach for integrating federated database information using database ontologies constructed from their extended metadata. Background One challenge of database federation is that the granularity of representation of equivalent data varies across systems. Dealing effectively with this problem is analogous to dealing with precoordinated vs. postcoordinated concepts in biomedical ontologies. Model Description The authors describe an approach based on ontological metadata mapping rules defined with elements of a global vocabulary, which allows a query specified at one granularity level to fetch data, where possible, from databases within the federation that use different granularities. This is implemented in OntoMediator, a newly developed production component of our previously described Query Integrator System. OntoMediator's operation is illustrated with a query that accesses three geographically separate, interoperating databases. An example based on SNOMED also illustrates the applicability of high-level rules to support the enforcement of constraints that can prevent inappropriate curator or power-user actions. Summary A rule-based framework simplifies the design and maintenance of systems where categories of data must be mapped to each other, for the purpose of either cross-database query or for curation of the contents of compositional controlled vocabularies. PMID:19567801

Indexing, screening, coding and cataloging of earth resources aircraft mission data

NASA Technical Reports Server (NTRS)

1977-01-01

Tasks completed are as follows: (1) preparation of large Area Crop Inventory experiment for data base entry;(2) preparation of Earth Observations Aircraft Flight summary reports for publication; (3) updating of the aircraft mission index coverage map and Ames aircraft flight map; (4) Prepared of Earth Observation Helicopter Flight reports for publication; and (5) indexing of LANDSAT imagery. (6) formulation of phase 3 biowindows 1, 2, 3, and 4 listings by country, footprint, and acqusition dates; (7) preparation of flight summary reports; and (8) preparation of an Alaska state index coverage map.

Vision based flight procedure stereo display system

NASA Astrophysics Data System (ADS)

Shen, Xiaoyun; Wan, Di; Ma, Lan; He, Yuncheng

2008-03-01

A virtual reality flight procedure vision system is introduced in this paper. The digital flight map database is established based on the Geographic Information System (GIS) and high definitions satellite remote sensing photos. The flight approaching area database is established through computer 3D modeling system and GIS. The area texture is generated from the remote sensing photos and aerial photographs in various level of detail. According to the flight approaching procedure, the flight navigation information is linked to the database. The flight approaching area vision can be dynamic displayed according to the designed flight procedure. The flight approaching area images are rendered in 2 channels, one for left eye images and the others for right eye images. Through the polarized stereoscopic projection system, the pilots and aircrew can get the vivid 3D vision of the flight destination approaching area. Take the use of this system in pilots preflight preparation procedure, the aircrew can get more vivid information along the flight destination approaching area. This system can improve the aviator's self-confidence before he carries out the flight mission, accordingly, the flight safety is improved. This system is also useful in validate the visual flight procedure design, and it helps to the flight procedure design.

Digital Geologic Map of the Rosalia 1:100,000 Quadrangle, Washington and Idaho: A Digital Database for the 1990 S.Z. Waggoner Map

USGS Publications Warehouse

Derkey, Pamela D.; Johnson, Bruce R.; Lackaff, Beatrice B.; Derkey, Robert E.

1998-01-01

The geologic map of the Rosalia 1:100,000-scale quadrangle was compiled in 1990 by S.Z. Waggoner of the Washington state Division of Geology and Earth Resources. This data was entered into a geographic information system (GIS) as part of a larger effort to create regional digital geology for the Pacific Northwest. The intent was to provide a digital geospatial database for a previously published black and white paper geologic map. This database can be queried in many ways to produce a variety of geologic maps. Digital base map data files are not included: they may be obtained from a variety of commercial and government sources. This database is not meant to be used or displayed at any scale larger than 1:100,000 (e.g., 1:62,500 or 1:24,000) as it has been somewhat generalized to fit the 1:100,000 scale map. The map area is located in eastern Washington and extends across the state border into western Idaho. This open-file report describes the methods used to convert the geologic map data into a digital format, documents the file structures, and explains how to download the digital files from the U.S. Geological Survey public access World Wide Web site on the Internet. We wish to thank J. Eric Schuster of the Washington Division of Geology and Earth Resources for providing the original stable-base mylar and the funding for it to be scanned. We also thank Dick Blank and Barry Moring of the U.S. Geological Survey for reviewing the manuscript and digital files, respectively.

Geologic Surface Effects of Underground Nuclear Testing, Buckboard Mesa, Climax Stock, Dome Mountain, Frenchman Flat, Rainier/Aqueduct Mesa, and Shoshone Mountain, Nevada Test Site, Nevada

USGS Publications Warehouse

Grasso, Dennis N.

2003-01-01

Surface effects maps were produced for 72 of 89 underground detonations conducted at the Frenchman Flat, Rainier Mesa and Aqueduct Mesa, Climax Stock, Shoshone Mountain, Buckboard Mesa, and Dome Mountain testing areas of the Nevada Test Site between August 10, 1957 (Saturn detonation, Area 12) and September 18, 1992 (Hunters Trophy detonation, Area 12). The ?Other Areas? Surface Effects Map Database, which was used to construct the maps shown in this report, contains digital reproductions of these original maps. The database is provided in both ArcGIS (v. 8.2) geodatabase format and ArcView (v. 3.2) shapefile format. This database contains sinks, cracks, faults, and other surface effects having a combined (cumulative) length of 136.38 km (84.74 mi). In GIS digital format, the user can view all surface effects maps simultaneously, select and view the surface effects of one or more sites of interest, or view specific surface effects by area or site. Three map layers comprise the database. They are: (1) the surface effects maps layer (oase_n27f), (2) the bar symbols layer (oase_bar_n27f), and (3) the ball symbols layer (oase_ball_n27f). Additionally, an annotation layer, named 'Ball_and_Bar_Labels,' and a polygon features layer, named 'Area12_features_poly_n27f,' are contained in the geodatabase version of the database. The annotation layer automatically labels all 295 ball-and-bar symbols shown on these maps. The polygon features layer displays areas of ground disturbances, such as rock spall and disturbed ground caused by the detonations. Shapefile versions of the polygon features layer in Nevada State Plane and Universal Transverse Mercator projections, named 'area12_features_poly_n27f.shp' and 'area12_features_poly_u83m.shp,' are also provided in the archive.

TabSQL: a MySQL tool to facilitate mapping user data to public databases.

PubMed

Xia, Xiao-Qin; McClelland, Michael; Wang, Yipeng

2010-06-23

With advances in high-throughput genomics and proteomics, it is challenging for biologists to deal with large data files and to map their data to annotations in public databases. We developed TabSQL, a MySQL-based application tool, for viewing, filtering and querying data files with large numbers of rows. TabSQL provides functions for downloading and installing table files from public databases including the Gene Ontology database (GO), the Ensembl databases, and genome databases from the UCSC genome bioinformatics site. Any other database that provides tab-delimited flat files can also be imported. The downloaded gene annotation tables can be queried together with users' data in TabSQL using either a graphic interface or command line. TabSQL allows queries across the user's data and public databases without programming. It is a convenient tool for biologists to annotate and enrich their data.

TabSQL: a MySQL tool to facilitate mapping user data to public databases

PubMed Central

2010-01-01

Background With advances in high-throughput genomics and proteomics, it is challenging for biologists to deal with large data files and to map their data to annotations in public databases. Results We developed TabSQL, a MySQL-based application tool, for viewing, filtering and querying data files with large numbers of rows. TabSQL provides functions for downloading and installing table files from public databases including the Gene Ontology database (GO), the Ensembl databases, and genome databases from the UCSC genome bioinformatics site. Any other database that provides tab-delimited flat files can also be imported. The downloaded gene annotation tables can be queried together with users' data in TabSQL using either a graphic interface or command line. Conclusions TabSQL allows queries across the user's data and public databases without programming. It is a convenient tool for biologists to annotate and enrich their data. PMID:20573251

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bower, J.C.; Burford, M.J.; Downing, T.R.

The Integrated Baseline System (IBS) is an emergency management planning and analysis tool that is being developed under the direction of the US Army Nuclear and Chemical Agency (USANCA). The IBS Data Management Guide provides the background, as well as the operations and procedures needed to generate and maintain a site-specific map database. Data and system managers use this guide to manage the data files and database that support the administrative, user-environment, database management, and operational capabilities of the IBS. This document provides a description of the data files and structures necessary for running the IBS software and using themore » site map database.« less

Geologic Map Database of Texas

USGS Publications Warehouse

Stoeser, Douglas B.; Shock, Nancy; Green, Gregory N.; Dumonceaux, Gayle M.; Heran, William D.

2005-01-01

The purpose of this report is to release a digital geologic map database for the State of Texas. This database was compiled for the U.S. Geological Survey (USGS) Minerals Program, National Surveys and Analysis Project, whose goal is a nationwide assemblage of geologic, geochemical, geophysical, and other data. This release makes the geologic data from the Geologic Map of Texas available in digital format. Original clear film positives provided by the Texas Bureau of Economic Geology were photographically enlarged onto Mylar film. These films were scanned, georeferenced, digitized, and attributed by Geologic Data Systems (GDS), Inc., Denver, Colorado. Project oversight and quality control was the responsibility of the U.S. Geological Survey. ESRI ArcInfo coverages, AMLs, and shapefiles are provided.

Preliminary investigation of submerged aquatic vegetation mapping using hyperspectral remote sensing.

PubMed

William, David J; Rybicki, Nancy B; Lombana, Alfonso V; O'Brien, Tim M; Gomez, Richard B

2003-01-01

The use of airborne hyperspectral remote sensing imagery for automated mapping of submerged aquatic vegetation (SAV) in the tidal Potomac River was investigated for near to real-time resource assessment and monitoring. Airborne hyperspectral imagery and field spectrometer measurements were obtained in October of 2000. A spectral library database containing selected ground-based and airborne sensor spectra was developed for use in image processing. The spectral library is used to automate the processing of hyperspectral imagery for potential real-time material identification and mapping. Field based spectra were compared to the airborne imagery using the database to identify and map two species of SAV (Myriophyllum spicatum and Vallisneria americana). Overall accuracy of the vegetation maps derived from hyperspectral imagery was determined by comparison to a product that combined aerial photography and field based sampling at the end of the SAV growing season. The algorithms and databases developed in this study will be useful with the current and forthcoming space-based hyperspectral remote sensing systems.

Bedrock geologic map of the Grafton quadrangle, Worcester County, Massachusetts

USGS Publications Warehouse

Walsh, Gregory J.; Aleinikoff, John N.; Dorais, Michael J.

2011-01-01

The bedrock geology of the 7.5-minute Grafton, Massachusetts, quadrangle consists of deformed Neoproterozoic to early Paleozoic crystalline metamorphic and intrusive igneous rocks. Neoproterozoic intrusive, metasedimentary, and metavolcanic rocks crop out in the Avalon zone, and Cambrian to Silurian intrusive, metasedimentary, and metavolcanic rocks crop out in the Nashoba zone. Rocks of the Avalon and Nashoba zones, or terranes, are separated by the Bloody Bluff fault. The bedrock geology was mapped to study the tectonic history of the area and to provide a framework for ongoing hydrogeologic characterization of the fractured bedrock of Massachusetts. This report presents mapping by G.J. Walsh, geochronology by J.N. Aleinikoff, geochemistry by M.J. Dorais, and consists of a map, text pamphlet, and GIS database. The map and text pamphlet are available in paper format or as downloadable files (see frame at right). The GIS database is available for download. The database includes contacts of bedrock geologic units, faults, outcrops, structural geologic information, and photographs.

Growth of Mycobacterium avium subsp. paratuberculosis, Escherichia coli, and Salmonella Enteritidis during Preparation and Storage of Yogurt

PubMed Central

Cirone, K.; Huberman, Y.; Morsella, C.; Méndez, L.; Jorge, M.; Paolicchi, F.

2013-01-01

The purpose of this study was to determine the viability of Mycobacterium avium subsp. paratuberculosis (MAP), Escherichia coli (E. coli), and Salmonella Enteritidis (S. Enteritidis) during preparation and refrigerated storage of yogurt. Three yogurts were prepared using pasteurized commercial milk. Each yogurt was artificially contaminated with (1) MAP, (2) E. coli + S. Enteritidis, and (3) MAP + E. coli + S. Enteritidis. Samples were taken during and after the fermentation process until day 20 after inoculation. MAP was not detected during their preparation and short-term storage but was recuperated after starting at 180 min after inoculation storage. Live bacterial counts of E. coli, and S. Enteritidis increased during the first 24 hours, followed by a slight decrease towards the end of the study. In this study it was shown how MAP, E. coli, and S. Enteritidis resisted the acidic conditions generated during the preparation of yogurt and low storage temperatures. This work contributes to current knowledge regarding survival of MAP, E. coli, and S. Enteritidis during preparation and refrigerated storage of yogurt and emphasizes the need to improve hygiene measures to ensure the absence of these pathogenic microorganisms in dairy products. PMID:24455399

MareyMap Online: A User-Friendly Web Application and Database Service for Estimating Recombination Rates Using Physical and Genetic Maps.

PubMed

Siberchicot, Aurélie; Bessy, Adrien; Guéguen, Laurent; Marais, Gabriel A B

2017-10-01

Given the importance of meiotic recombination in biology, there is a need to develop robust methods to estimate meiotic recombination rates. A popular approach, called the Marey map approach, relies on comparing genetic and physical maps of a chromosome to estimate local recombination rates. In the past, we have implemented this approach in an R package called MareyMap, which includes many functionalities useful to get reliable recombination rate estimates in a semi-automated way. MareyMap has been used repeatedly in studies looking at the effect of recombination on genome evolution. Here, we propose a simpler user-friendly web service version of MareyMap, called MareyMap Online, which allows a user to get recombination rates from her/his own data or from a publicly available database that we offer in a few clicks. When the analysis is done, the user is asked whether her/his curated data can be placed in the database and shared with other users, which we hope will make meta-analysis on recombination rates including many species easy in the future. © The Author 2017. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

Global small-scale lunar cartography

NASA Technical Reports Server (NTRS)

Lipskiy, Y. N.; Pskovskiy, Y. P.; Rodionova, Z. F.; Shevchenko, V. V.; Chikmachev, V. I.; Volchkova, L. I.

1972-01-01

The primary sources information for compiling this map were the photographs of the visible hemisphere obtained by earth-based observatories, the Luna 3 and Zond 3 pictures, and a small number of Lunar Orbiter pictures. The primary content of the complete lunar map is the surface relief and its tonal characteristics. In preparing the map, particular attention was devoted to the variety of lunar relief forms. The color spectrum of the map was selected not only for the natural coloring of the lunar surface, but also with the objective of achieving maximum expressiveness. A lunar globe to scale 1:10 million was prepared along with the preparation of the map. The scale of the globe, half that of the map, led to some selection and generalization of the relief forms. The globe permits maintaining simultaneously geometric similarity of contours, exact proportions of areas, and identical scales in all directions. The globe was prepared in both the Latin and Russian languages.

Preliminary geologic map of the eastern Willapa Hills, Cowlitz, Lewis, and Wahkiakum Counties, Washington

USGS Publications Warehouse

Wells, Ray E.; Sawlan, Michael G.

2014-01-01

This digital map database and the PDF derived from the database were created from the analog geologic map: Wells, R.E. (1981), “Geologic map of the eastern Willapa Hills, Cowlitz, Lewis, and Wahkiakum Counties, Washington.” The geodatabase replicates the geologic mapping of the 1981 report with minor exceptions along water boundaries and also along the north and south map boundaries. Slight adjustments to contacts along water boundaries were made to correct differences between the topographic base map used in the 1981 compilation (analog USGS 15-minute series quadrangle maps at 1:62,500 scale) and the base map used for this digital compilation (scanned USGS 7.5-minute series quadrangle maps at 1:24,000 scale). These minor adjustments, however, did not materially alter the geologic map. No new field mapping was performed to create this digital map database, and no attempt was made to fit geologic contacts to the new 1:24,000 topographic base, except as noted above. We corrected typographical errors, formatting errors, and attribution errors (for example, the name change of Goble Volcanics to Grays River Volcanics following current State of Washington usage; Walsh and others, 1987). We also updated selected references, substituted published papers for abstracts, and cited published radiometric ages for the volcanic and plutonic rocks. The reader is referred to Magill and others (1982), Wells and Coe (1985), Walsh and others (1987), Moothart (1993), Payne (1998), Kleibacker (2001), McCutcheon (2003), Wells and others (2009), Chan and others (2012), and Wells and others (in press) for subsequent interpretations of the Willapa Hills geology.

FGDC Digital Cartographic Standard for Geologic Map Symbolization (PostScript Implementation)

USGS Publications Warehouse

,

2006-01-01

PLEASE NOTE: This now-approved 'FGDC Digital Cartographic Standard for Geologic Map Symbolization (PostScript Implementation)' officially supercedes its earlier (2000) Public Review Draft version (see 'Earlier Versions of the Standard' below). In August 2006, the Digital Cartographic Standard for Geologic Map Symbolization was officially endorsed by the Federal Geographic Data Committee (FGDC) as the national standard for the digital cartographic representation of geologic map features (FGDC Document Number FGDC-STD-013-2006). Presented herein is the PostScript Implementation of the standard, which will enable users to directly apply the symbols in the standard to geologic maps and illustrations prepared in desktop illustration and (or) publishing software. The FGDC Digital Cartographic Standard for Geologic Map Symbolization contains descriptions, examples, cartographic specifications, and notes on usage for a wide variety of symbols that may be used on typical, general-purpose geologic maps and related products such as cross sections. The standard also can be used for different kinds of special-purpose or derivative map products and databases that may be focused on a specific geoscience topic (for example, slope stability) or class of features (for example, a fault map). The standard is scale-independent, meaning that the symbols are appropriate for use with geologic mapping compiled or published at any scale. It will be useful to anyone who either produces or uses geologic map information, whether in analog or digital form. Please be aware that this standard is not intended to be used inflexibly or in a manner that will limit one's ability to communicate the observations and interpretations gained from geologic mapping. In certain situations, a symbol or its usage might need to be modified in order to better represent a particular feature on a geologic map or cross section. This standard allows the use of any symbol that doesn't conflict with others in the standard, provided that it is clearly explained on the map and in the database. In addition, modifying the size, color, and (or) lineweight of an existing symbol to suit the needs of a particular map or output device also is permitted, provided that the modified symbol's appearance is not too similar to another symbol on the map. Be aware, however, that reducing lineweights below .125 mm (.005 inch) may cause symbols to plot incorrectly if output at higher resolutions (1800 dpi or higher). For guidelines on symbol usage, as well as on color design and map labeling, please refer to the standard's introductory text. Also found there are informational sections covering concepts of geologic mapping and some definitions of geologic map features, as well as sections on the newly defined concepts and terminology for the scientific confidence and locational accuracy of geologic map features. More information on both the past development and the future maintenance of the FGDC Digital Cartographic Standard for Geologic Map Symbolization can be found at the FGDC Geologic Data Subcommittee website (http://ngmdb.usgs.gov/fgdc_gds/). Earlier Versions of the Standard

Color reproduction and processing algorithm based on real-time mapping for endoscopic images.

PubMed

Khan, Tareq H; Mohammed, Shahed K; Imtiaz, Mohammad S; Wahid, Khan A

2016-01-01

In this paper, we present a real-time preprocessing algorithm for image enhancement for endoscopic images. A novel dictionary based color mapping algorithm is used for reproducing the color information from a theme image. The theme image is selected from a nearby anatomical location. A database of color endoscopy image for different location is prepared for this purpose. The color map is dynamic as its contents change with the change of the theme image. This method is used on low contrast grayscale white light images and raw narrow band images to highlight the vascular and mucosa structures and to colorize the images. It can also be applied to enhance the tone of color images. The statistic visual representation and universal image quality measures show that the proposed method can highlight the mucosa structure compared to other methods. The color similarity has been verified using Delta E color difference, structure similarity index, mean structure similarity index and structure and hue similarity. The color enhancement was measured using color enhancement factor that shows considerable improvements. The proposed algorithm has low and linear time complexity, which results in higher execution speed than other related works.

Fish Karyome version 2.1: a chromosome database of fishes and other aquatic organisms

PubMed Central

Nagpure, Naresh Sahebrao; Pathak, Ajey Kumar; Pati, Rameshwar; Rashid, Iliyas; Sharma, Jyoti; Singh, Shri Prakash; Singh, Mahender; Sarkar, Uttam Kumar; Kushwaha, Basdeo; Kumar, Ravindra; Murali, S.

2016-01-01

A voluminous information is available on karyological studies of fishes; however, limited efforts were made for compilation and curation of the available karyological data in a digital form. ‘Fish Karyome’ database was the preliminary attempt to compile and digitize the available karyological information on finfishes belonging to the Indian subcontinent. But the database had limitations since it covered data only on Indian finfishes with limited search options. Perceiving the feedbacks from the users and its utility in fish cytogenetic studies, the Fish Karyome database was upgraded by applying Linux, Apache, MySQL and PHP (pre hypertext processor) (LAMP) technologies. In the present version, the scope of the system was increased by compiling and curating the available chromosomal information over the globe on fishes and other aquatic organisms, such as echinoderms, molluscs and arthropods, especially of aquaculture importance. Thus, Fish Karyome version 2.1 presently covers 866 chromosomal records for 726 species supported with 253 published articles and the information is being updated regularly. The database provides information on chromosome number and morphology, sex chromosomes, chromosome banding, molecular cytogenetic markers, etc. supported by fish and karyotype images through interactive tools. It also enables the users to browse and view chromosomal information based on habitat, family, conservation status and chromosome number. The system also displays chromosome number in model organisms, protocol for chromosome preparation and allied techniques and glossary of cytogenetic terms. A data submission facility has also been provided through data submission panel. The database can serve as a unique and useful resource for cytogenetic characterization, sex determination, chromosomal mapping, cytotaxonomy, karyo-evolution and systematics of fishes. Database URL: http://mail.nbfgr.res.in/Fish_Karyome PMID:26980518

Fish Karyome version 2.1: a chromosome database of fishes and other aquatic organisms.

PubMed

Nagpure, Naresh Sahebrao; Pathak, Ajey Kumar; Pati, Rameshwar; Rashid, Iliyas; Sharma, Jyoti; Singh, Shri Prakash; Singh, Mahender; Sarkar, Uttam Kumar; Kushwaha, Basdeo; Kumar, Ravindra; Murali, S

2016-01-01

A voluminous information is available on karyological studies of fishes; however, limited efforts were made for compilation and curation of the available karyological data in a digital form. 'Fish Karyome' database was the preliminary attempt to compile and digitize the available karyological information on finfishes belonging to the Indian subcontinent. But the database had limitations since it covered data only on Indian finfishes with limited search options. Perceiving the feedbacks from the users and its utility in fish cytogenetic studies, the Fish Karyome database was upgraded by applying Linux, Apache, MySQL and PHP (pre hypertext processor) (LAMP) technologies. In the present version, the scope of the system was increased by compiling and curating the available chromosomal information over the globe on fishes and other aquatic organisms, such as echinoderms, molluscs and arthropods, especially of aquaculture importance. Thus, Fish Karyome version 2.1 presently covers 866 chromosomal records for 726 species supported with 253 published articles and the information is being updated regularly. The database provides information on chromosome number and morphology, sex chromosomes, chromosome banding, molecular cytogenetic markers, etc. supported by fish and karyotype images through interactive tools. It also enables the users to browse and view chromosomal information based on habitat, family, conservation status and chromosome number. The system also displays chromosome number in model organisms, protocol for chromosome preparation and allied techniques and glossary of cytogenetic terms. A data submission facility has also been provided through data submission panel. The database can serve as a unique and useful resource for cytogenetic characterization, sex determination, chromosomal mapping, cytotaxonomy, karyo-evolution and systematics of fishes. Database URL: http://mail.nbfgr.res.in/Fish_Karyome. © The Author(s) 2016. Published by Oxford University Press.

Integrating Radar Image Data with Google Maps

NASA Technical Reports Server (NTRS)

Chapman, Bruce D.; Gibas, Sarah

2010-01-01

A public Web site has been developed as a method for displaying the multitude of radar imagery collected by NASA s Airborne Synthetic Aperture Radar (AIRSAR) instrument during its 16-year mission. Utilizing NASA s internal AIRSAR site, the new Web site features more sophisticated visualization tools that enable the general public to have access to these images. The site was originally maintained at NASA on six computers: one that held the Oracle database, two that took care of the software for the interactive map, and three that were for the Web site itself. Several tasks were involved in moving this complicated setup to just one computer. First, the AIRSAR database was migrated from Oracle to MySQL. Then the back-end of the AIRSAR Web site was updated in order to access the MySQL database. To do this, a few of the scripts needed to be modified; specifically three Perl scripts that query that database. The database connections were then updated from Oracle to MySQL, numerous syntax errors were corrected, and a query was implemented that replaced one of the stored Oracle procedures. Lastly, the interactive map was designed, implemented, and tested so that users could easily browse and access the radar imagery through the Google Maps interface.

An integrated photogrammetric and spatial database management system for producing fully structured data using aerial and remote sensing images.

PubMed

Ahmadi, Farshid Farnood; Ebadi, Hamid

2009-01-01

3D spatial data acquired from aerial and remote sensing images by photogrammetric techniques is one of the most accurate and economic data sources for GIS, map production, and spatial data updating. However, there are still many problems concerning storage, structuring and appropriate management of spatial data obtained using these techniques. According to the capabilities of spatial database management systems (SDBMSs); direct integration of photogrammetric and spatial database management systems can save time and cost of producing and updating digital maps. This integration is accomplished by replacing digital maps with a single spatial database. Applying spatial databases overcomes the problem of managing spatial and attributes data in a coupled approach. This management approach is one of the main problems in GISs for using map products of photogrammetric workstations. Also by the means of these integrated systems, providing structured spatial data, based on OGC (Open GIS Consortium) standards and topological relations between different feature classes, is possible at the time of feature digitizing process. In this paper, the integration of photogrammetric systems and SDBMSs is evaluated. Then, different levels of integration are described. Finally design, implementation and test of a software package called Integrated Photogrammetric and Oracle Spatial Systems (IPOSS) is presented.

BiKEGG: a COBRA toolbox extension for bridging the BiGG and KEGG databases.

PubMed

Jamialahmadi, Oveis; Motamedian, Ehsan; Hashemi-Najafabadi, Sameereh

2016-10-18

Development of an interface tool between the Biochemical, Genetic and Genomic (BiGG) and KEGG databases is necessary for simultaneous access to the features of both databases. For this purpose, we present the BiKEGG toolbox, an open source COBRA toolbox extension providing a set of functions to infer the reaction correspondences between the KEGG reaction identifiers and those in the BiGG knowledgebase using a combination of manual verification and computational methods. Inferred reaction correspondences using this approach are supported by evidence from the literature, which provides a higher number of reconciled reactions between these two databases compared to the MetaNetX and MetRxn databases. This set of equivalent reactions is then used to automatically superimpose the predicted fluxes using COBRA methods on classical KEGG pathway maps or to create a customized metabolic map based on the KEGG global metabolic pathway, and to find the corresponding reactions in BiGG based on the genome annotation of an organism in the KEGG database. Customized metabolic maps can be created for a set of pathways of interest, for the whole KEGG global map or exclusively for all pathways for which there exists at least one flux carrying reaction. This flexibility in visualization enables BiKEGG to indicate reaction directionality as well as to visualize the reaction fluxes for different static or dynamic conditions in an animated manner. BiKEGG allows the user to export (1) the output visualized metabolic maps to various standard image formats or save them as a video or animated GIF file, and (2) the equivalent reactions for an organism as an Excel spreadsheet.

A search map for organic additives and solvents applicable in high-voltage rechargeable batteries.

PubMed

Park, Min Sik; Park, Insun; Kang, Yoon-Sok; Im, Dongmin; Doo, Seok-Gwang

2016-09-29

Chemical databases store information such as molecular formulas, chemical structures, and the physical and chemical properties of compounds. Although the massive databases of organic compounds exist, the search of target materials is constrained by a lack of physical and chemical properties necessary for specific applications. With increasing interest in the development of energy storage systems such as high-voltage rechargeable batteries, it is critical to find new electrolytes efficiently. Here we build a search map to screen organic additives and solvents with novel core and functional groups, and thus establish a database of electrolytes to identify the most promising electrolyte for high-voltage rechargeable batteries. This search map is generated from MAssive Molecular Map BUilder (MAMMBU) by combining a high-throughput quantum chemical simulation with an artificial neural network algorithm. MAMMBU is designed for predicting the oxidation and reduction potentials of organic compounds existing in the massive organic compound database, PubChem. We develop a search map composed of ∼1 000 000 redox potentials and elucidate the quantitative relationship between the redox potentials and functional groups. Finally, we screen a quinoxaline compound for an anode additive and apply it to electrolytes and improve the capacity retention from 64.3% to 80.8% near 200 cycles for a lithium ion battery in experiments.

Latent fingerprint matching.

PubMed

Jain, Anil K; Feng, Jianjiang

2011-01-01

Latent fingerprint identification is of critical importance to law enforcement agencies in identifying suspects: Latent fingerprints are inadvertent impressions left by fingers on surfaces of objects. While tremendous progress has been made in plain and rolled fingerprint matching, latent fingerprint matching continues to be a difficult problem. Poor quality of ridge impressions, small finger area, and large nonlinear distortion are the main difficulties in latent fingerprint matching compared to plain or rolled fingerprint matching. We propose a system for matching latent fingerprints found at crime scenes to rolled fingerprints enrolled in law enforcement databases. In addition to minutiae, we also use extended features, including singularity, ridge quality map, ridge flow map, ridge wavelength map, and skeleton. We tested our system by matching 258 latents in the NIST SD27 database against a background database of 29,257 rolled fingerprints obtained by combining the NIST SD4, SD14, and SD27 databases. The minutiae-based baseline rank-1 identification rate of 34.9 percent was improved to 74 percent when extended features were used. In order to evaluate the relative importance of each extended feature, these features were incrementally used in the order of their cost in marking by latent experts. The experimental results indicate that singularity, ridge quality map, and ridge flow map are the most effective features in improving the matching accuracy.

Vegetation database for land-cover mapping, Clark and Lincoln Counties, Nevada

USGS Publications Warehouse

Charlet, David A.; Damar, Nancy A.; Leary, Patrick J.

2014-01-01

Floristic and other vegetation data were collected at 3,175 sample sites to support land-cover mapping projects in Clark and Lincoln Counties, Nevada, from 2007 to 2013. Data were collected at sample sites that were selected to fulfill mapping priorities by one of two different plot sampling approaches. Samples were described at the stand level and classified into the National Vegetation Classification hierarchy at the alliance level and above. The vegetation database is presented in geospatial and tabular formats.

Geologic map and digital database of the Porcupine Wash 7.5 minute Quadrangle, Riverside County, southern California

USGS Publications Warehouse

Powell, Robert E.

2001-01-01

This data set maps and describes the geology of the Porcupine Wash 7.5 minute quadrangle, Riverside County, southern California. The quadrangle, situated in Joshua Tree National Park in the eastern Transverse Ranges physiographic and structural province, encompasses parts of the Hexie Mountains, Cottonwood Mountains, northern Eagle Mountains, and south flank of Pinto Basin. It is underlain by a basement terrane comprising Proterozoic metamorphic rocks, Mesozoic plutonic rocks, and Mesozoic and Mesozoic or Cenozoic hypabyssal dikes. The basement terrane is capped by a widespread Tertiary erosion surface preserved in remnants in the Eagle and Cottonwood Mountains and buried beneath Cenozoic deposits in Pinto Basin. Locally, Miocene basalt overlies the erosion surface. A sequence of at least three Quaternary pediments is planed into the north piedmont of the Eagle and Hexie Mountains, each in turn overlain by successively younger residual and alluvial deposits. The Tertiary erosion surface is deformed and broken by north-northwest-trending, high-angle, dip-slip faults and an east-west trending system of high-angle dip- and left-slip faults. East-west trending faults are younger than and perhaps in part coeval with faults of the northwest-trending set. The Porcupine Wash database was created using ARCVIEW and ARC/INFO, which are geographical information system (GIS) software products of Envronmental Systems Research Institute (ESRI). The database consists of the following items: (1) a map coverage showing faults and geologic contacts and units, (2) a separate coverage showing dikes, (3) a coverage showing structural data, (4) a scanned topographic base at a scale of 1:24,000, and (5) attribute tables for geologic units (polygons and regions), contacts (arcs), and site-specific data (points). The database, accompanied by a pamphlet file and this metadata file, also includes the following graphic and text products: (1) A portable document file (.pdf) containing a navigable graphic of the geologic map on a 1:24,000 topographic base. The map is accompanied by a marginal explanation consisting of a Description of Map and Database Units (DMU), a Correlation of Map and Database Units (CMU), and a key to point-and line-symbols. (2) Separate .pdf files of the DMU and CMU, individually. (3) A PostScript graphic-file containing the geologic map on a 1:24,000 topographic base accompanied by the marginal explanation. (4) A pamphlet that describes the database and how to access it. Within the database, geologic contacts , faults, and dikes are represented as lines (arcs), geologic units as polygons and regions, and site-specific data as points. Polygon, arc, and point attribute tables (.pat, .aat, and .pat, respectively) uniquely identify each geologic datum and link it to other tables (.rel) that provide more detailed geologic information.

Possible costs associated with investigating and mitigating geologic hazards in rural areas of western San Mateo County, California with a section on using the USGS website to determine the cost of developing property for residences in rural parts of San Mateo County, California

USGS Publications Warehouse

Brabb, Earl E.; Roberts, Sebastian; Cotton, William R.; Kropp, Alan L.; Wright, Robert H.; Zinn, Erik N.; Digital database by Roberts, Sebastian; Mills, Suzanne K.; Barnes, Jason B.; Marsolek, Joanna E.

2000-01-01

This publication consists of a digital map database on a geohazards web site, http://kaibab.wr.usgs.gov/geohazweb/intro.htm, this text, and 43 digital map images available for downloading at this site. The report is stored as several digital files, in ARC export (uncompressed) format for the database, and Postscript and PDF formats for the map images. Several of the source data layers for the images have already been released in other publications by the USGS and are available for downloading on the Internet. These source layers are not included in this digital database, but rather a reference is given for the web site where the data can be found in digital format. The exported ARC coverages and grids lie in UTM zone 10 projection. The pamphlet, which only describes the content and character of the digital map database, is included as Postscript, PDF, and ASCII text files and is also available on paper as USGS Open-File Report 00-127. The full versatility of the spatial database is realized by importing the ARC export files into ARC/INFO or an equivalent GIS. Other GIS packages, including MapInfo and ARCVIEW, can also use the ARC export files. The Postscript map image can be used for viewing or plotting in computer systems with sufficient capacity, and the considerably smaller PDF image files can be viewed or plotted in full or in part from Adobe ACROBAT software running on Macintosh, PC, or UNIX platforms.

Review and critical appraisal of studies mapping from quality of life or clinical measures to EQ-5D: an online database and application of the MAPS statement.

PubMed

Dakin, Helen; Abel, Lucy; Burns, Richéal; Yang, Yaling

2018-02-12

The Health Economics Research Centre (HERC) Database of Mapping Studies was established in 2013, based on a systematic review of studies developing mapping algorithms predicting EQ-5D. The Mapping onto Preference-based measures reporting Standards (MAPS) statement was published in 2015 to improve reporting of mapping studies. We aimed to update the systematic review and assess the extent to which recently-published studies mapping condition-specific quality of life or clinical measures to the EQ-5D follow the guidelines published in the MAPS Reporting Statement. A published systematic review was updated using the original inclusion criteria to include studies published by December 2016. We included studies reporting novel algorithms mapping from any clinical measure or patient-reported quality of life measure to either the EQ-5D-3L or EQ-5D-5L. Titles and abstracts of all identified studies and the full text of papers published in 2016 were assessed against the MAPS checklist. The systematic review identified 144 mapping studies reporting 190 algorithms mapping from 110 different source instruments to EQ-5D. Of the 17 studies published in 2016, nine (53%) had titles that followed the MAPS statement guidance, although only two (12%) had abstracts that fully addressed all MAPS items. When the full text of these papers was assessed against the complete MAPS checklist, only two studies (12%) were found to fulfil or partly fulfil all criteria. Of the 141 papers (across all years) that included abstracts, the items on the MAPS statement checklist that were fulfilled by the largest number of studies comprised having a structured abstract (95%) and describing target instruments (91%) and source instruments (88%). The number of published mapping studies continues to increase. Our updated database provides a convenient way to identify mapping studies for use in cost-utility analysis. Most recent studies do not fully address all items on the MAPS checklist.

Why are they missing? : Bioinformatics characterization of missing human proteins.

PubMed

Elguoshy, Amr; Magdeldin, Sameh; Xu, Bo; Hirao, Yoshitoshi; Zhang, Ying; Kinoshita, Naohiko; Takisawa, Yusuke; Nameta, Masaaki; Yamamoto, Keiko; El-Refy, Ali; El-Fiky, Fawzy; Yamamoto, Tadashi

2016-10-21

NeXtProt is a web-based protein knowledge platform that supports research on human proteins. NeXtProt (release 2015-04-28) lists 20,060 proteins, among them, 3373 canonical proteins (16.8%) lack credible experimental evidence at protein level (PE2:PE5). Therefore, they are considered as "missing proteins". A comprehensive bioinformatic workflow has been proposed to analyze these "missing" proteins. The aims of current study were to analyze physicochemical properties, existence and distribution of the tryptic cleavage sites, and to pinpoint the signature peptides of the missing proteins. Our findings showed that 23.7% of missing proteins were hydrophobic proteins possessing transmembrane domains (TMD). Also, forty missing entries generate tryptic peptides were either out of mass detection range (>30aa) or mapped to different proteins (<9aa). Additionally, 21% of missing entries didn't generate any unique tryptic peptides. In silico endopeptidase combination strategy increased the possibility of missing proteins identification. Coherently, using both mature protein database and signal peptidome database could be a promising option to identify some missing proteins by targeting their unique N-terminal tryptic peptide from mature protein database and or C-terminus tryptic peptide from signal peptidome database. In conclusion, Identification of missing protein requires additional consideration during sample preparation, extraction, digestion and data analysis to increase its incidence of identification. Copyright © 2016. Published by Elsevier B.V.

Engineering geological mapping in Wallonia (Belgium) : present state and recent computerized approach

NASA Astrophysics Data System (ADS)

Delvoie, S.; Radu, J.-P.; Ruthy, I.; Charlier, R.

2012-04-01

An engineering geological map can be defined as a geological map with a generalized representation of all the components of a geological environment which are strongly required for spatial planning, design, construction and maintenance of civil engineering buildings. In Wallonia (Belgium) 24 engineering geological maps have been developed between the 70s and the 90s at 1/5,000 or 1/10,000 scale covering some areas of the most industrialized and urbanized cities (Liège, Charleroi and Mons). They were based on soil and subsoil data point (boring, drilling, penetration test, geophysical test, outcrop…). Some displayed data present the depth (with isoheights) or the thickness (with isopachs) of the different subsoil layers up to about 50 m depth. Information about geomechanical properties of each subsoil layer, useful for engineers and urban planners, is also synthesized. However, these maps were built up only on paper and progressively needed to be updated with new soil and subsoil data. The Public Service of Wallonia and the University of Liège have recently initiated a study to evaluate the feasibility to develop engineering geological mapping with a computerized approach. Numerous and various data (about soil and subsoil) are stored into a georelational database (the geotechnical database - using Access, Microsoft®). All the data are geographically referenced. The database is linked to a GIS project (using ArcGIS, ESRI®). Both the database and GIS project consist of a powerful tool for spatial data management and analysis. This approach involves a methodology using interpolation methods to update the previous maps and to extent the coverage to new areas. The location (x, y, z) of each subsoil layer is then computed from data point. The geomechanical data of these layers are synthesized in an explanatory booklet joined to maps.

Accurate atom-mapping computation for biochemical reactions.

PubMed

Latendresse, Mario; Malerich, Jeremiah P; Travers, Mike; Karp, Peter D

2012-11-26

The complete atom mapping of a chemical reaction is a bijection of the reactant atoms to the product atoms that specifies the terminus of each reactant atom. Atom mapping of biochemical reactions is useful for many applications of systems biology, in particular for metabolic engineering where synthesizing new biochemical pathways has to take into account for the number of carbon atoms from a source compound that are conserved in the synthesis of a target compound. Rapid, accurate computation of the atom mapping(s) of a biochemical reaction remains elusive despite significant work on this topic. In particular, past researchers did not validate the accuracy of mapping algorithms. We introduce a new method for computing atom mappings called the minimum weighted edit-distance (MWED) metric. The metric is based on bond propensity to react and computes biochemically valid atom mappings for a large percentage of biochemical reactions. MWED models can be formulated efficiently as Mixed-Integer Linear Programs (MILPs). We have demonstrated this approach on 7501 reactions of the MetaCyc database for which 87% of the models could be solved in less than 10 s. For 2.1% of the reactions, we found multiple optimal atom mappings. We show that the error rate is 0.9% (22 reactions) by comparing these atom mappings to 2446 atom mappings of the manually curated Kyoto Encyclopedia of Genes and Genomes (KEGG) RPAIR database. To our knowledge, our computational atom-mapping approach is the most accurate and among the fastest published to date. The atom-mapping data will be available in the MetaCyc database later in 2012; the atom-mapping software will be available within the Pathway Tools software later in 2012.

Brassica ASTRA: an integrated database for Brassica genomic research.

PubMed

Love, Christopher G; Robinson, Andrew J; Lim, Geraldine A C; Hopkins, Clare J; Batley, Jacqueline; Barker, Gary; Spangenberg, German C; Edwards, David

2005-01-01

Brassica ASTRA is a public database for genomic information on Brassica species. The database incorporates expressed sequences with Swiss-Prot and GenBank comparative sequence annotation as well as secondary Gene Ontology (GO) annotation derived from the comparison with Arabidopsis TAIR GO annotations. Simple sequence repeat molecular markers are identified within resident sequences and mapped onto the closely related Arabidopsis genome sequence. Bacterial artificial chromosome (BAC) end sequences derived from the Multinational Brassica Genome Project are also mapped onto the Arabidopsis genome sequence enabling users to identify candidate Brassica BACs corresponding to syntenic regions of Arabidopsis. This information is maintained in a MySQL database with a web interface providing the primary means of interrogation. The database is accessible at http://hornbill.cspp.latrobe.edu.au.

Genome databases

DOE Office of Scientific and Technical Information (OSTI.GOV)

Courteau, J.

1991-10-11

Since the Genome Project began several years ago, a plethora of databases have been developed or are in the works. They range from the massive Genome Data Base at Johns Hopkins University, the central repository of all gene mapping information, to small databases focusing on single chromosomes or organisms. Some are publicly available, others are essentially private electronic lab notebooks. Still others limit access to a consortium of researchers working on, say, a single human chromosome. An increasing number incorporate sophisticated search and analytical software, while others operate as little more than data lists. In consultation with numerous experts inmore » the field, a list has been compiled of some key genome-related databases. The list was not limited to map and sequence databases but also included the tools investigators use to interpret and elucidate genetic data, such as protein sequence and protein structure databases. Because a major goal of the Genome Project is to map and sequence the genomes of several experimental animals, including E. coli, yeast, fruit fly, nematode, and mouse, the available databases for those organisms are listed as well. The author also includes several databases that are still under development - including some ambitious efforts that go beyond data compilation to create what are being called electronic research communities, enabling many users, rather than just one or a few curators, to add or edit the data and tag it as raw or confirmed.« less

New vegetation type map of India prepared using satellite remote sensing: Comparison with global vegetation maps and utilities

NASA Astrophysics Data System (ADS)

Roy, P. S.; Behera, M. D.; Murthy, M. S. R.; Roy, Arijit; Singh, Sarnam; Kushwaha, S. P. S.; Jha, C. S.; Sudhakar, S.; Joshi, P. K.; Reddy, Ch. Sudhakar; Gupta, Stutee; Pujar, Girish; Dutt, C. B. S.; Srivastava, V. K.; Porwal, M. C.; Tripathi, Poonam; Singh, J. S.; Chitale, Vishwas; Skidmore, A. K.; Rajshekhar, G.; Kushwaha, Deepak; Karnatak, Harish; Saran, Sameer; Giriraj, A.; Padalia, Hitendra; Kale, Manish; Nandy, Subrato; Jeganathan, C.; Singh, C. P.; Biradar, C. M.; Pattanaik, Chiranjibi; Singh, D. K.; Devagiri, G. M.; Talukdar, Gautam; Panigrahy, Rabindra K.; Singh, Harnam; Sharma, J. R.; Haridasan, K.; Trivedi, Shivam; Singh, K. P.; Kannan, L.; Daniel, M.; Misra, M. K.; Niphadkar, Madhura; Nagabhatla, Nidhi; Prasad, Nupoor; Tripathi, O. P.; Prasad, P. Rama Chandra; Dash, Pushpa; Qureshi, Qamer; Tripathi, S. K.; Ramesh, B. R.; Gowda, Balakrishnan; Tomar, Sanjay; Romshoo, Shakil; Giriraj, Shilpa; Ravan, Shirish A.; Behera, Soumit Kumar; Paul, Subrato; Das, Ashesh Kumar; Ranganath, B. K.; Singh, T. P.; Sahu, T. R.; Shankar, Uma; Menon, A. R. R.; Srivastava, Gaurav; Neeti; Sharma, Subrat; Mohapatra, U. B.; Peddi, Ashok; Rashid, Humayun; Salroo, Irfan; Krishna, P. Hari; Hajra, P. K.; Vergheese, A. O.; Matin, Shafique; Chaudhary, Swapnil A.; Ghosh, Sonali; Lakshmi, Udaya; Rawat, Deepshikha; Ambastha, Kalpana; Malik, Akhtar H.; Devi, B. S. S.; Gowda, Balakrishna; Sharma, K. C.; Mukharjee, Prashant; Sharma, Ajay; Davidar, Priya; Raju, R. R. Venkata; Katewa, S. S.; Kant, Shashi; Raju, Vatsavaya S.; Uniyal, B. P.; Debnath, Bijan; Rout, D. K.; Thapa, Rajesh; Joseph, Shijo; Chhetri, Pradeep; Ramachandran, Reshma M.

2015-07-01

A seamless vegetation type map of India (scale 1: 50,000) prepared using medium-resolution IRS LISS-III images is presented. The map was created using an on-screen visual interpretation technique and has an accuracy of 90%, as assessed using 15,565 ground control points. India has hitherto been using potential vegetation/forest type map prepared by Champion and Seth in 1968. We characterized and mapped further the vegetation type distribution in the country in terms of occurrence and distribution, area occupancy, percentage of protected area (PA) covered by each vegetation type, range of elevation, mean annual temperature and precipitation over the past 100 years. A remote sensing-amenable hierarchical classification scheme that accommodates natural and semi-natural systems was conceptualized, and the natural vegetation was classified into forests, scrub/shrub lands and grasslands on the basis of extent of vegetation cover. We discuss the distribution and potential utility of the vegetation type map in a broad range of ecological, climatic and conservation applications from global, national and local perspectives. We used 15,565 ground control points to assess the accuracy of products available globally (i.e., GlobCover, Holdridge's life zone map and potential natural vegetation (PNV) maps). Hence we recommend that the map prepared herein be used widely. This vegetation type map is the most comprehensive one developed for India so far. It was prepared using 23.5 m seasonal satellite remote sensing data, field samples and information relating to the biogeography, climate and soil. The digital map is now available through a web portal (http://bis.iirs.gov.in).

KIDFamMap: a database of kinase-inhibitor-disease family maps for kinase inhibitor selectivity and binding mechanisms

PubMed Central

Chiu, Yi-Yuan; Lin, Chih-Ta; Huang, Jhang-Wei; Hsu, Kai-Cheng; Tseng, Jen-Hu; You, Syuan-Ren; Yang, Jinn-Moon

2013-01-01

Kinases play central roles in signaling pathways and are promising therapeutic targets for many diseases. Designing selective kinase inhibitors is an emergent and challenging task, because kinases share an evolutionary conserved ATP-binding site. KIDFamMap (http://gemdock.life.nctu.edu.tw/KIDFamMap/) is the first database to explore kinase-inhibitor families (KIFs) and kinase-inhibitor-disease (KID) relationships for kinase inhibitor selectivity and mechanisms. This database includes 1208 KIFs, 962 KIDs, 55 603 kinase-inhibitor interactions (KIIs), 35 788 kinase inhibitors, 399 human protein kinases, 339 diseases and 638 disease allelic variants. Here, a KIF can be defined as follows: (i) the kinases in the KIF with significant sequence similarity, (ii) the inhibitors in the KIF with significant topology similarity and (iii) the KIIs in the KIF with significant interaction similarity. The KIIs within a KIF are often conserved on some consensus KIDFamMap anchors, which represent conserved interactions between the kinase subsites and consensus moieties of their inhibitors. Our experimental results reveal that the members of a KIF often possess similar inhibition profiles. The KIDFamMap anchors can reflect kinase conformations types, kinase functions and kinase inhibitor selectivity. We believe that KIDFamMap provides biological insights into kinase inhibitor selectivity and binding mechanisms. PMID:23193279

Geologic map of Lake Mead and surrounding regions, southern Nevada, southwestern Utah, and northwestern Arizona

USGS Publications Warehouse

Felger, Tracey J.; Beard, Sue

2010-01-01

Regional stratigraphic units and structural features of the Lake Mead region are presented as a 1:250,000 scale map, and as a Geographic Information System database. The map, which was compiled from existing geologic maps of various scales, depicts geologic units, bedding and foliation attitudes, faults and folds. Units and structural features were generalized to highlight the regional stratigraphic and tectonic aspects of the geology of the Lake Mead region. This map was prepared in support of the papers presented in this volume, Special Paper 463, as well as to facilitate future investigations in the region. Stratigraphic units exposed within the area record 1800 million years of geologic history and include Proterozoic crystalline rocks, Paleozoic and Mesozoic sedimentary rocks, Mesozoic plutonic rocks, Cenozoic volcanic and intrusive rocks, sedimentary rocks and surfi cial deposits. Following passive margin sedimentation in the Paleozoic and Mesozoic, late Mesozoic (Sevier) thrusting and Late Cretaceous and early Tertiary compression produced major folding, reverse faulting, and thrust faulting in the Basin and Range, and resulted in regional uplift and monoclinal folding in the Colorado Plateau. Cenozoic extensional deformation, accompanied by sedimentation and volcanism, resulted in large-magnitude high- and low-angle normal faulting and strike-slip faulting in the Basin and Range; on the Colorado Plateau, extension produced north-trending high-angle normal faults. The latest history includes integration of the Colorado River system, dissection, development of alluvial fans, extensive pediment surfaces, and young faulting.

Pollen-inferred quantitative reconstructions of Holocene land-cover in NW Europe for the evaluation of past climate-vegetation feedbacks - methods and first maps of the cover of plant functional types at 6000, 3000, 600, 200 and 0 BP.

NASA Astrophysics Data System (ADS)

Trondman, Anna-Kari; Gaillard, Marie-José; Sugita, Shinya; Mazier, Florence; Fyfe, Ralph; Nielsen, Anne-Birgitte; Leydet, Michelle; Members, Landclim

2010-05-01

Quantitative estimates of land-cover changes during the Holocene have become increasingly important for a better understanding of the earth surface-atmosphere feedbacks, and refining climate models. The LANDCLIM project and research network (sponsored by the Swedish [VR] and Nordic [NordForsk] Research Councils) (see Gaillard et al., CL 1.22) have the objective to quantify human-induced changes in regional land-cover in NW Europe during the Holocene, and to evaluate the effects of these changes on the regional climate through altered feedbacks. We use the REVEALS model to estimate the percentage cover of groups of taxa (plant functional types, PFTs) from fossil pollen data. The past cover of PFTs will be compared with the outputs of the LPJ-GUESS, a widely-used dynamic vegetation model, and applied as an alternative to the simulated LPG-GUESS vegetation to run the regional climate model RCA3 for the past. The REVEALS model requires raw pollen counts, site radius, pollen productivity estimates (PPEs), and fall speed of pollen (FS). PPEs and FS are available for 34 taxa in the study area. The study area is divided between four principle investigators within the LANDCLIM project. A protocol was established in order to standardize the strategy and methods applied to prepare the pollen data and run REVEALS. It includes instructions for both data contributors and users on 1) chronologies, 2) pollen taxa and harmonization with the PPEs available, and 3) number of pollen taxa and datasets of PPEs to use in alternative test runs. New age-depth models were performed for several records to ensure consistency in the chronologies. The pollen records are selected from pollen databases, i.e. the European Pollen Database (EPD), the Czech Pollen Database (PALYCZ) and the Alpine Pollen Database (ALPDABA), as well as obtained directly from the authors. Using the pollen records of the Czech Pollen Database, the effect on the REVEALS estimates of 1) basin type (lakes or bogs), 2) number of pollen taxa, 3) PPEs dataset, and 4) number of dates per record used to establish the chronology (≥3 or ≥5) was tested (see Mazier et al. CL 1.21). Following the results of these tests, the first maps are based on REVEALS runs using pollen records from both lakes and bogs with ≥3 dates, 24 taxa (entomophilous taxa excluded), and the mean of all PPEs available in the study area. The maps are produced for 10 PFTs (LPJ-GUESS) and 3 PFTs (RCA3) at a spatial resolution of 1o x 1o for five selected time windows of the Holocene with contrasting human-induced land-cover (0-100 cal BP, 100-350 cal BP, 350-700 cal BP, 2700-3200 cal BP and 5700-6200 cal BP). The maps of PFTs show significant changes in the degree of human-induced vegetation openness through the Holocene over most of the study area. There are large discrepancies between these first quantitative land-cover maps and earlier maps based on pollen data and other methods such as biomization and the modern analogue approach. * The following LANDCLIM members are acknowledged for providing pollen records and for help with pollen databases: Teija Alenius (Espoo), Heather Almquist-Jacobson (Montana, USA), Lena Barnekow and Thomas Persson (Lund), Jonas Bergman (Stockholm), Anne Bjune and John Birks (Bergen), Thomas Giesecke (Göttingen), Rixt de Jong (Bern), Mihkel Kangur and Tiiuu Koff (Tallinn), Malgorzata Latalowa (Gdansk), Ann-Marie Robertsson (Stockholm), Ulf Segerström and Henrik von Stedingk (Umeå), Heikki Seppä (Helsinki). Sugita, S. 2007. The Holocene, 17, 229-241.

Database for the geologic map of Upper Geyser Basin, Yellowstone National Park, Wyoming

USGS Publications Warehouse

Abendini, Atosa A.; Robinson, Joel E.; Muffler, L. J. Patrick; White, D. E.; Beeson, Melvin H.; Truesdell, A. H.

2015-01-01

This dataset contains contacts, geologic units, and map boundaries from Miscellaneous Investigations Series Map I-1371, "The Geologic map of upper Geyser Basin, Yellowstone, National Park, Wyoming". This dataset was constructed to produce a digital geologic map as a basis for ongoing studies of hydrothermal processes.

The National Deep-Sea Coral and Sponge Database: A Comprehensive Resource for United States Deep-Sea Coral and Sponge Records

NASA Astrophysics Data System (ADS)

Dornback, M.; Hourigan, T.; Etnoyer, P.; McGuinn, R.; Cross, S. L.

2014-12-01

Research on deep-sea corals has expanded rapidly over the last two decades, as scientists began to realize their value as long-lived structural components of high biodiversity habitats and archives of environmental information. The NOAA Deep Sea Coral Research and Technology Program's National Database for Deep-Sea Corals and Sponges is a comprehensive resource for georeferenced data on these organisms in U.S. waters. The National Database currently includes more than 220,000 deep-sea coral records representing approximately 880 unique species. Database records from museum archives, commercial and scientific bycatch, and from journal publications provide baseline information with relatively coarse spatial resolution dating back as far as 1842. These data are complemented by modern, in-situ submersible observations with high spatial resolution, from surveys conducted by NOAA and NOAA partners. Management of high volumes of modern high-resolution observational data can be challenging. NOAA is working with our data partners to incorporate this occurrence data into the National Database, along with images and associated information related to geoposition, time, biology, taxonomy, environment, provenance, and accuracy. NOAA is also working to link associated datasets collected by our program's research, to properly archive them to the NOAA National Data Centers, to build a robust metadata record, and to establish a standard protocol to simplify the process. Access to the National Database is provided through an online mapping portal. The map displays point based records from the database. Records can be refined by taxon, region, time, and depth. The queries and extent used to view the map can also be used to download subsets of the database. The database, map, and website is already in use by NOAA, regional fishery management councils, and regional ocean planning bodies, but we envision it as a model that can expand to accommodate data on a global scale.

Kazusa Marker DataBase: a database for genomics, genetics, and molecular breeding in plants.

PubMed

Shirasawa, Kenta; Isobe, Sachiko; Tabata, Satoshi; Hirakawa, Hideki

2014-09-01

In order to provide useful genomic information for agronomical plants, we have established a database, the Kazusa Marker DataBase (http://marker.kazusa.or.jp). This database includes information on DNA markers, e.g., SSR and SNP markers, genetic linkage maps, and physical maps, that were developed at the Kazusa DNA Research Institute. Keyword searches for the markers, sequence data used for marker development, and experimental conditions are also available through this database. Currently, 10 plant species have been targeted: tomato (Solanum lycopersicum), pepper (Capsicum annuum), strawberry (Fragaria × ananassa), radish (Raphanus sativus), Lotus japonicus, soybean (Glycine max), peanut (Arachis hypogaea), red clover (Trifolium pratense), white clover (Trifolium repens), and eucalyptus (Eucalyptus camaldulensis). In addition, the number of plant species registered in this database will be increased as our research progresses. The Kazusa Marker DataBase will be a useful tool for both basic and applied sciences, such as genomics, genetics, and molecular breeding in crops.

Landslide susceptibility map: from research to application

NASA Astrophysics Data System (ADS)

Fiorucci, Federica; Reichenbach, Paola; Ardizzone, Francesca; Rossi, Mauro; Felicioni, Giulia; Antonini, Guendalina

2014-05-01

Susceptibility map is an important and essential tool in environmental planning, to evaluate landslide hazard and risk and for a correct and responsible management of the territory. Landslide susceptibility is the likelihood of a landslide occurring in an area on the basis of local terrain conditions. Can be expressed as the probability that any given region will be affected by landslides, i.e. an estimate of "where" landslides are likely to occur. In this work we present two examples of landslide susceptibility map prepared for the Umbria Region and for the Perugia Municipality. These two maps were realized following official request from the Regional and Municipal government to the Research Institute for the Hydrogeological Protection (CNR-IRPI). The susceptibility map prepared for the Umbria Region represents the development of previous agreements focused to prepare: i) a landslide inventory map that was included in the Urban Territorial Planning (PUT) and ii) a series of maps for the Regional Plan for Multi-risk Prevention. The activities carried out for the Umbria Region were focused to define and apply methods and techniques for landslide susceptibility zonation. Susceptibility maps were prepared exploiting a multivariate statistical model (linear discriminant analysis) for the five Civil Protection Alert Zones defined in the regional territory. The five resulting maps were tested and validated using the spatial distribution of recent landslide events that occurred in the region. The susceptibility map for the Perugia Municipality was prepared to be integrated as one of the cartographic product in the Municipal development plan (PRG - Piano Regolatore Generale) as required by the existing legislation. At strategic level, one of the main objectives of the PRG, is to establish a framework of knowledge and legal aspects for the management of geo-hydrological risk. At national level most of the susceptibility maps prepared for the PRG, were and still are obtained qualitatively classifying the territory according to slope classes. For the Perugia Municipality the susceptibility map was obtained combining results of statistical multivariate models and landslide density map. In particular, in the first phase a susceptibility zonation was prepared using different single and combined probability statistical multivariate techniques. The zonation was then combined and compared with the landslide density map in order to reclassify the false negative (portion of the territory classified by the model as stable affected by slope failures). The semi-quantitative resulting map was classified in five susceptibility classes. For each class a set of technical regulation was established to manage the territory.

Maps of Quaternary Deposits and Liquefaction Susceptibility in the Central San Francisco Bay Region, California

USGS Publications Warehouse

Witter, Robert C.; Knudsen, Keith L.; Sowers, Janet M.; Wentworth, Carl M.; Koehler, Richard D.; Randolph, Carolyn E.; Brooks, Suzanna K.; Gans, Kathleen D.

2006-01-01

This report presents a map and database of Quaternary deposits and liquefaction susceptibility for the urban core of the San Francisco Bay region. It supercedes the equivalent area of U.S. Geological Survey Open-File Report 00-444 (Knudsen and others, 2000), which covers the larger 9-county San Francisco Bay region. The report consists of (1) a spatial database, (2) two small-scale colored maps (Quaternary deposits and liquefaction susceptibility), (3) a text describing the Quaternary map and liquefaction interpretation (part 3), and (4) a text introducing the report and describing the database (part 1). All parts of the report are digital; part 1 describes the database and digital files and how to obtain them by downloading across the internet. The nine counties surrounding San Francisco Bay straddle the San Andreas fault system, which exposes the region to serious earthquake hazard (Working Group on California Earthquake Probabilities, 1999). Much of the land adjacent to the Bay and the major rivers and streams is underlain by unconsolidated deposits that are particularly vulnerable to earthquake shaking and liquefaction of water-saturated granular sediment. This new map provides a consistent detailed treatment of the central part of the 9-county region in which much of the mapping of Open-File Report 00-444 was either at smaller (less detailed) scale or represented only preliminary revision of earlier work. Like Open-File Report 00-444, the current mapping uses geomorphic expression, pedogenic soils, inferred depositional environments, and geologic age to define and distinguish the map units. Further scrutiny of the factors controlling liquefaction susceptibility has led to some changes relative to Open-File Report 00-444: particularly the reclassification of San Francisco Bay mud (Qhbm) to have only MODERATE susceptibility and the rating of artificial fills according to the Quaternary map units inferred to underlie them (other than dams - adf). The two colored maps provide a regional summary of the new mapping at a scale of 1:200,000, a scale that is sufficient to show the general distribution and relationships of the map units but not to distinguish the more detailed elements that are present in the database. The report is the product of cooperative work by the National Earthquake Hazards Reduction Program (NEHRP) and National Cooperative Geologic Mapping Program of the U.S. Geological Survey, William Lettis and & Associates, Inc. (WLA), and the California Geological Survey. An earlier version was submitted to the U.S. Geological Survey by WLA as a final report for a NEHRP grant (Witter and others, 2005). The mapping has been carried out by WLA geologists under contract to the NEHRP Earthquake Program (Grant 99-HQ-GR-0095) and by the California Geological Survey.

Map-Based Querying for Multimedia Database

DTIC Science & Technology

2014-09-01

existing assets in a custom multimedia database based on an area of interest. It also describes the augmentation of an Android Tactical Assault Kit (ATAK......for Multimedia Database Somiya Metu Computational and Information Sciences Directorate, ARL

A Free Database of Auto-detected Full-sun Coronal Hole Maps

NASA Astrophysics Data System (ADS)

Caplan, R. M.; Downs, C.; Linker, J.

2016-12-01

We present a 4-yr (06/10/2010 to 08/18/14 at 6-hr cadence) database of full-sun synchronic EUV and coronal hole (CH) maps made available on a dedicated web site (http://www.predsci.com/chd). The maps are generated using STEREO/EUVI A&B 195Å and SDO/AIA 193Å images through an automated pipeline (Caplan et al, (2016) Ap.J. 823, 53).Specifically, the original data is preprocessed with PSF-deconvolution, a nonlinear limb-brightening correction, and a nonlinear inter-instrument intensity normalization. Coronal holes are then detected in the preprocessed images using a GPU-accelerated region growing segmentation algorithm. The final results from all three instruments are then merged and projected to form full-sun sine-latitude maps. All the software used in processing the maps is provided, which can easily be adapted for use with other instruments and channels. We describe the data pipeline and show examples from the database. We also detail recent CH-detection validation experiments using synthetic EUV emission images produced from global thermodynamic MHD simulations.

SModelS v1.1 user manual: Improving simplified model constraints with efficiency maps

NASA Astrophysics Data System (ADS)

Ambrogi, Federico; Kraml, Sabine; Kulkarni, Suchita; Laa, Ursula; Lessa, Andre; Magerl, Veronika; Sonneveld, Jory; Traub, Michael; Waltenberger, Wolfgang

2018-06-01

SModelS is an automatized tool for the interpretation of simplified model results from the LHC. It allows to decompose models of new physics obeying a Z2 symmetry into simplified model components, and to compare these against a large database of experimental results. The first release of SModelS, v1.0, used only cross section upper limit maps provided by the experimental collaborations. In this new release, v1.1, we extend the functionality of SModelS to efficiency maps. This increases the constraining power of the software, as efficiency maps allow to combine contributions to the same signal region from different simplified models. Other new features of version 1.1 include likelihood and χ2 calculations, extended information on the topology coverage, an extended database of experimental results as well as major speed upgrades for both the code and the database. We describe in detail the concepts and procedures used in SModelS v1.1, explaining in particular how upper limits and efficiency map results are dealt with in parallel. Detailed instructions for code usage are also provided.

Predictive landslide susceptibility mapping using spatial information in the Pechabun area of Thailand

NASA Astrophysics Data System (ADS)

Oh, Hyun-Joo; Lee, Saro; Chotikasathien, Wisut; Kim, Chang Hwan; Kwon, Ju Hyoung

2009-04-01

For predictive landslide susceptibility mapping, this study applied and verified probability model, the frequency ratio and statistical model, logistic regression at Pechabun, Thailand, using a geographic information system (GIS) and remote sensing. Landslide locations were identified in the study area from interpretation of aerial photographs and field surveys, and maps of the topography, geology and land cover were constructed to spatial database. The factors that influence landslide occurrence, such as slope gradient, slope aspect and curvature of topography and distance from drainage were calculated from the topographic database. Lithology and distance from fault were extracted and calculated from the geology database. Land cover was classified from Landsat TM satellite image. The frequency ratio and logistic regression coefficient were overlaid for landslide susceptibility mapping as each factor’s ratings. Then the landslide susceptibility map was verified and compared using the existing landslide location. As the verification results, the frequency ratio model showed 76.39% and logistic regression model showed 70.42% in prediction accuracy. The method can be used to reduce hazards associated with landslides and to plan land cover.

EMAP and EMAGE: a framework for understanding spatially organized data.

PubMed

Baldock, Richard A; Bard, Jonathan B L; Burger, Albert; Burton, Nicolas; Christiansen, Jeff; Feng, Guanjie; Hill, Bill; Houghton, Derek; Kaufman, Matthew; Rao, Jianguo; Sharpe, James; Ross, Allyson; Stevenson, Peter; Venkataraman, Shanmugasundaram; Waterhouse, Andrew; Yang, Yiya; Davidson, Duncan R

2003-01-01

The Edinburgh MouseAtlas Project (EMAP) is a time-series of mouse-embryo volumetric models. The models provide a context-free spatial framework onto which structural interpretations and experimental data can be mapped. This enables collation, comparison, and query of complex spatial patterns with respect to each other and with respect to known or hypothesized structure. The atlas also includes a time-dependent anatomical ontology and mapping between the ontology and the spatial models in the form of delineated anatomical regions or tissues. The models provide a natural, graphical context for browsing and visualizing complex data. The Edinburgh Mouse Atlas Gene-Expression Database (EMAGE) is one of the first applications of the EMAP framework and provides a spatially mapped gene-expression database with associated tools for data mapping, submission, and query. In this article, we describe the underlying principles of the Atlas and the gene-expression database, and provide a practical introduction to the use of the EMAP and EMAGE tools, including use of new techniques for whole body gene-expression data capture and mapping.

Digital images in the map revision process

NASA Astrophysics Data System (ADS)

Newby, P. R. T.

Progress towards the adoption of digital (or softcopy) photogrammetric techniques for database and map revision is reviewed. Particular attention is given to the Ordnance Survey of Great Britain, the author's former employer, where digital processes are under investigation but have not yet been introduced for routine production. Developments which may lead to increasing automation of database update processes appear promising, but because of the cost and practical problems associated with managing as well as updating large digital databases, caution is advised when considering the transition to softcopy photogrammetry for revision tasks.

Mapping Research in the Field of Special Education on the Island of Ireland since 2000

ERIC Educational Resources Information Center

Travers, Joseph; Savage, Rosie; Butler, Cathal; O'Donnell, Margaret

2018-01-01

This paper describes the process of building a database mapping research and policy in the field of special education on the island of Ireland from 2000 to 2013. The field of study includes special educational needs, disability and inclusion. The database contains 3188 references organised thematically and forms a source for researchers to access…

MAPS: The Organization of a Spatial Database System Using Imagery, Terrain, and Map Data

DTIC Science & Technology

1983-06-01

segments which share the same pixel position. Finally, in any largo system, a logical partitioning of the database must be performed in order to avoid...34theodore roosevelt memoria entry 0; entry 1: Virginia ’northwest Washington* 2 en 11" ies for "crossover" for ’theodore roosevelt memor i entry 0

Mapping PDB chains to UniProtKB entries.

PubMed

Martin, Andrew C R

2005-12-01

UniProtKB/SwissProt is the main resource for detailed annotations of protein sequences. This database provides a jumping-off point to many other resources through the links it provides. Among others, these include other primary databases, secondary databases, the Gene Ontology and OMIM. While a large number of links are provided to Protein Data Bank (PDB) files, obtaining a regularly updated mapping between UniProtKB entries and PDB entries at the chain or residue level is not straightforward. In particular, there is no regularly updated resource which allows a UniProtKB/SwissProt entry to be identified for a given residue of a PDB file. We have created a completely automatically maintained database which maps PDB residues to residues in UniProtKB/SwissProt and UniProtKB/trEMBL entries. The protocol uses links from PDB to UniProtKB, from UniProtKB to PDB and a brute-force sequence scan to resolve PDB chains for which no annotated link is available. Finally the sequences from PDB and UniProtKB are aligned to obtain a residue-level mapping. The resource may be queried interactively or downloaded from http://www.bioinf.org.uk/pdbsws/.

Digital geologic map of the Thirsty Canyon NW quadrangle, Nye County, Nevada

USGS Publications Warehouse

Minor, S.A.; Orkild, P.P.; Sargent, K.A.; Warren, R.G.; Sawyer, D.A.; Workman, J.B.

1998-01-01

This digital geologic map compilation presents new polygon (i.e., geologic map unit contacts), line (i.e., fault, fold axis, dike, and caldera wall), and point (i.e., structural attitude) vector data for the Thirsty Canyon NW 7 1/2' quadrangle in southern Nevada. The map database, which is at 1:24,000-scale resolution, provides geologic coverage of an area of current hydrogeologic and tectonic interest. The Thirsty Canyon NW quadrangle is located in southern Nye County about 20 km west of the Nevada Test Site (NTS) and 30 km north of the town of Beatty. The map area is underlain by extensive layers of Neogene (about 14 to 4.5 million years old [Ma]) mafic and silicic volcanic rocks that are temporally and spatially associated with transtensional tectonic deformation. Mapped volcanic features include part of a late Miocene (about 9.2 Ma) collapse caldera, a Pliocene (about 4.5 Ma) shield volcano, and two Pleistocene (about 0.3 Ma) cinder cones. Also documented are numerous normal, oblique-slip, and strike-slip faults that reflect regional transtensional deformation along the southern part of the Walker Lane belt. The Thirsty Canyon NW map provides new geologic information for modeling groundwater flow paths that may enter the map area from underground nuclear testing areas located in the NTS about 25 km to the east. The geologic map database comprises six component ArcINFO map coverages that can be accessed after decompressing and unbundling the data archive file (tcnw.tar.gz). These six coverages (tcnwpoly, tcnwflt, tcnwfold, tcnwdike, tcnwcald, and tcnwatt) are formatted here in ArcINFO EXPORT format. Bundled with this database are two PDF files for readily viewing and printing the map, accessory graphics, and a description of map units and compilation methods.

Geologic Map and Map Database of the Oakland Metropolitan Area, Alameda, Contra Costa, and San Francisco Counties, California

USGS Publications Warehouse

Graymer, R.W.

2000-01-01

Introduction This report contains a new geologic map at 1:50,000 scale, derived from a set of geologic map databases containing information at a resolution associated with 1:24,000 scale, and a new description of geologic map units and structural relationships in the mapped area. The map database represents the integration of previously published reports and new geologic mapping and field checking by the author (see Sources of Data index map on the map sheet or the Arc-Info coverage pi-so and the textfile pi-so.txt). The descriptive text (below) contains new ideas about the Hayward fault and other faults in the East Bay fault system, as well as new ideas about the geologic units and their relations. These new data are released in digital form in conjunction with the Federal Emergency Management Agency Project Impact in Oakland. The goal of Project Impact is to use geologic information in land-use and emergency services planning to reduce the losses occurring during earthquakes, landslides, and other hazardous geologic events. The USGS, California Division of Mines and Geology, FEMA, California Office of Emergency Services, and City of Oakland participated in the cooperative project. The geologic data in this report were provided in pre-release form to other Project Impact scientists, and served as one of the basic data layers for the analysis of hazard related to earthquake shaking, liquifaction, earthquake induced landsliding, and rainfall induced landsliding. The publication of these data provides an opportunity for regional planners, local, state, and federal agencies, teachers, consultants, and others outside Project Impact who are interested in geologic data to have the new data long before a traditional paper map could be published. Because the database contains information about both the bedrock and surficial deposits, it has practical applications in the study of groundwater and engineering of hillside materials, as well as the study of geologic hazards and the academic research on the geologic history and development of the region.

pseudoMap: an innovative and comprehensive resource for identification of siRNA-mediated mechanisms in human transcribed pseudogenes.

PubMed

Chan, Wen-Ling; Yang, Wen-Kuang; Huang, Hsien-Da; Chang, Jan-Gowth

2013-01-01

RNA interference (RNAi) is a gene silencing process within living cells, which is controlled by the RNA-induced silencing complex with a sequence-specific manner. In flies and mice, the pseudogene transcripts can be processed into short interfering RNAs (siRNAs) that regulate protein-coding genes through the RNAi pathway. Following these findings, we construct an innovative and comprehensive database to elucidate siRNA-mediated mechanism in human transcribed pseudogenes (TPGs). To investigate TPG producing siRNAs that regulate protein-coding genes, we mapped the TPGs to small RNAs (sRNAs) that were supported by publicly deep sequencing data from various sRNA libraries and constructed the TPG-derived siRNA-target interactions. In addition, we also presented that TPGs can act as a target for miRNAs that actually regulate the parental gene. To enable the systematic compilation and updating of these results and additional information, we have developed a database, pseudoMap, capturing various types of information, including sequence data, TPG and cognate annotation, deep sequencing data, RNA-folding structure, gene expression profiles, miRNA annotation and target prediction. As our knowledge, pseudoMap is the first database to demonstrate two mechanisms of human TPGs: encoding siRNAs and decoying miRNAs that target the parental gene. pseudoMap is freely accessible at http://pseudomap.mbc.nctu.edu.tw/. Database URL: http://pseudomap.mbc.nctu.edu.tw/

Challenges in making a seismic hazard map for Alaska and the Aleutians

USGS Publications Warehouse

Wesson, R.L.; Boyd, O.S.; Mueller, C.S.; Frankel, A.D.; Freymueller, J.T.

2008-01-01

We present a summary of the data and analyses leading to the revision of the time-independent probabilistic seismic hazard maps of Alaska and the Aleutians. These maps represent a revision of existing maps based on newly obtained data, and reflect best current judgments about methodology and approach. They have been prepared following the procedures and assumptions made in the preparation of the 2002 National Seismic Hazard Maps for the lower 48 States, and will be proposed for adoption in future revisions to the International Building Code. We present example maps for peak ground acceleration, 0.2 s spectral amplitude (SA), and 1.0 s SA at a probability level of 2% in 50 years (annual probability of 0.000404). In this summary, we emphasize issues encountered in preparation of the maps that motivate or require future investigation and research.

The Magnetics Information Consortium (MagIC) Online Database: Uploading, Searching and Visualizing Paleomagnetic and Rock Magnetic Data

NASA Astrophysics Data System (ADS)

Minnett, R.; Koppers, A.; Tauxe, L.; Constable, C.; Pisarevsky, S. A.; Jackson, M.; Solheid, P.; Banerjee, S.; Johnson, C.

2006-12-01

The Magnetics Information Consortium (MagIC) is commissioned to implement and maintain an online portal to a relational database populated by both rock and paleomagnetic data. The goal of MagIC is to archive all measurements and the derived properties for studies of paleomagnetic directions (inclination, declination) and intensities, and for rock magnetic experiments (hysteresis, remanence, susceptibility, anisotropy). MagIC is hosted under EarthRef.org at http://earthref.org/MAGIC/ and has two search nodes, one for paleomagnetism and one for rock magnetism. Both nodes provide query building based on location, reference, methods applied, material type and geological age, as well as a visual map interface to browse and select locations. The query result set is displayed in a digestible tabular format allowing the user to descend through hierarchical levels such as from locations to sites, samples, specimens, and measurements. At each stage, the result set can be saved and, if supported by the data, can be visualized by plotting global location maps, equal area plots, or typical Zijderveld, hysteresis, and various magnetization and remanence diagrams. User contributions to the MagIC database are critical to achieving a useful research tool. We have developed a standard data and metadata template (Version 2.1) that can be used to format and upload all data at the time of publication in Earth Science journals. Software tools are provided to facilitate population of these templates within Microsoft Excel. These tools allow for the import/export of text files and provide advanced functionality to manage and edit the data, and to perform various internal checks to maintain data integrity and prepare for uploading. The MagIC Contribution Wizard at http://earthref.org/MAGIC/upload.htm executes the upload and takes only a few minutes to process several thousand data records. The standardized MagIC template files are stored in the digital archives of EarthRef.org where they remain available for download by the public (in both text and Excel format). Finally, the contents of these template files are automatically parsed into the online relational database, making the data available for online searches in the paleomagnetic and rock magnetic search nodes. The MagIC database contains all data transferred from the IAGA paleomagnetic poles database (GPMDB), the lava flow paleosecular variation database (PSVRL), lake sediment database (SECVR) and the PINT database. Additionally, a substantial number of data compiled under the Time Averaged Field Investigations project is now included plus a significant fraction of the data collected at SIO and the IRM. Ongoing additions of legacy data include over 40 papers from studies on the Hawaiian Islands and Mexico, data compilations from archeomagnetic studies and updates to the lake sediment dataset.

Publications of the Western Geologic Mapping Team 1997-1998

USGS Publications Warehouse

Stone, Paul; Powell, C.L.

1999-01-01

The Western Geologic Mapping Team (WGMT) of the U.S. Geological Survey, Geologic Division (USGS, GD), conducts geologic mapping and related topical earth-science studies in the western United States. This work is focused on areas where modern geologic maps and associated earth-science data are needed to address key societal and environmental issues such as ground-water quality, potential geologic hazards, and land-use decisions. Areas of primary emphasis currently include southern California, the San Francisco Bay region, the Pacific Northwest, the Las Vegas urban corridor, and selected National Park lands. The team has its headquarters in Menlo Park, California, and maintains smaller field offices at several other locations in the western United States. The results of research conducted by the WGMT are released to the public as a variety of databases, maps, text reports, and abstracts, both through the internal publication system of the USGS and in diverse external publications such as scientific journals and books. This report lists publications of the WGMT released in calendar years 1997 and 1998. Most of the publications listed were authored or coauthored by WGMT staff. However, the list also includes some publications authored by formal non-USGS cooperators with the WGMT, as well as some authored by USGS staff outside the WGMT in cooperation with WGMT projects. Several of the publications listed are available on the World Wide Web; for these, URL addresses are provided. Most of these Web publications are USGS open-file reports that contain large digital databases of geologic map and related information. For these, the bibliographic citation refers specifically to an explanatory pamphlet containing information about the content and accessibility of the database, not to the actual map or related information comprising the database itself.

Geologic map of the Reyes Peak quadrangle, Ventura County, California

USGS Publications Warehouse

Minor, Scott A.

2004-01-01

New 1:24,000-scale geologic mapping in the Cuyama 30' x 60' quadrangle, in support of the USGS Southern California Areal Mapping Project (SCAMP), is contributing to a more complete understanding of the stratigraphy, structure, and tectonic evolution of the complex junction area between the NW-trending Coast Ranges and EW-trending western Transverse Ranges. The 1:24,000-scale geologic map of the Reyes Peak quadrangle, located in the eastern part of the Cuyama map area, is the final of six contiguous 7 ?' quadrangle geologic maps compiled for a more detailed portrayal and reevaluation of geologic structures and rock units shown on previous maps of the region (Carman, 1964; Dibblee, 1972; Vedder and others, 1973). SCAMP digital geologic maps of the five other contiguous quadrangles have recently been published (Minor, 1999; Kellogg, 1999, 2003; Stone and Cossette, 2000; Kellogg and Miggins, 2002). This digital compilation presents a new geologic map database for the Reyes Peak 7?' quadrangle, which is located in southern California about 75 km northwest of Los Angeles. The map database is at 1:24,000-scale resolution.

Preliminary geologic map of the Fontana 7.5' quadrangle, Riverside and San Bernardino Counties, California

USGS Publications Warehouse

Morton, Douglas M.; Digital preparation by Bovard, Kelly R.

2003-01-01

Open-File Report 03-418 is a digital geologic data set that maps and describes the geology of the Fontana 7.5’ quadrangle, Riverside and San Bernardino Counties, California. The Fontana quadrangle database is one of several 7.5’ quadrangle databases that are being produced by the Southern California Areal Mapping Project (SCAMP). These maps and databases are, in turn, part of the nation-wide digital geologic map coverage being developed by the National Cooperative Geologic Map Program of the U.S. Geological Survey (USGS). General Open-File Report 03-418 contains a digital geologic map database of the Fontana 7.5’ quadrangle, Riverside and San Bernardino Counties, California that includes: 1. ARC/INFO (Environmental Systems Research Institute, http://www.esri.com) version 7.2.1 coverages of the various elements of the geologic map. 2. A Postscript file (fon_map.ps) to plot the geologic map on a topographic base, and containing a Correlation of Map Units diagram (CMU), a Description of Map Units (DMU), and an index map. 3. An Encapsulated PostScript (EPS) file (fon_grey.eps) created in Adobe Illustrator 10.0 to plot the geologic map on a grey topographic base, and containing a Correlation of Map Units (CMU), a Description of Map Units (DMU), and an index map. 4. Portable Document Format (.pdf) files of: a. the Readme file; includes in Appendix I, data contained in fon_met.txt b. The same graphics as plotted in 2 and 3 above.Test plots have not produced precise 1:24,000-scale map sheets. Adobe Acrobat page size setting influences map scale. The Correlation of Map Units and Description of Map Units is in the editorial format of USGS Geologic Investigations Series (I-series) maps but has not been edited to comply with I-map standards. Within the geologic map data package, map units are identified by standard geologic map criteria such as formation-name, age, and lithology. Where known, grain size is indicated on the map by a subscripted letter or letters following the unit symbols as follows: lg, large boulders; b, boulder; g, gravel; a, arenaceous; s, silt; c, clay; e.g. Qyfa is a predominantly young alluvial fan deposit that is arenaceous. Multiple letters are used for more specific identification or for mixed units, e.g., Qfysa is a silty sand. In some cases, mixed units are indicated by a compound symbol; e.g., Qyf2sc. Even though this is an Open-File Report and includes the standard USGS Open-File disclaimer, the report closely adheres to the stratigraphic nomenclature of the U.S. Geological Survey. Descriptions of units can be obtained by viewing or plotting the .pdf file (4b above) or plotting the postscript files (2 or 3 above).

Analysis of land suitability for urban development in Ahwaz County in southwestern Iran using fuzzy logic and analytic network process (ANP).

PubMed

Malmir, Maryam; Zarkesh, Mir Masoud Kheirkhah; Monavari, Seyed Masoud; Jozi, Seyed Ali; Sharifi, Esmail

2016-08-01

The ever-increasing development of cities due to population growth and migration has led to unplanned constructions and great changes in urban spatial structure, especially the physical development of cities in unsuitable places, which requires conscious guidance and fundamental organization. It is therefore necessary to identify suitable sites for future development of cities and prevent urban sprawl as one of the main concerns of urban managers and planners. In this study, to determine the suitable sites for urban development in the county of Ahwaz, the effective biophysical and socioeconomic criteria (including 27 sub-criteria) were initially determined based on literature review and interviews with certified experts. In the next step, a database of criteria and sub-criteria was prepared. Standardization of values and unification of scales in map layers were done using fuzzy logic. The criteria and sub-criteria were weighted by analytic network process (ANP) in the Super Decision software. Next, the map layers were overlaid using weighted linear combination (WLC) in the GIS software. According to the research findings, the final land suitability map was prepared with five suitability classes of very high (5.86 %), high (31.93 %), medium (38.61 %), low (17.65 %), and very low (5.95 %). Also, in terms of spatial distribution, suitable lands for urban development are mainly located in the central and southern parts of the Ahwaz County. It is expected that integration of fuzzy logic and ANP model will provide a better decision support tool compared with other models. The developed model can also be used in the land suitability analysis of other cities.

Database on unstable rock slopes in Norway

NASA Astrophysics Data System (ADS)

Oppikofer, Thierry; Nordahl, Bo; Bunkholt, Halvor; Nicolaisen, Magnus; Hermanns, Reginald L.; Böhme, Martina; Yugsi Molina, Freddy X.

2014-05-01

Several large rockslides have occurred in historic times in Norway causing many casualties. Most of these casualties are due to displacement waves triggered by a rock avalanche and affecting coast lines of entire lakes and fjords. The Geological Survey of Norway performs systematic mapping of unstable rock slopes in Norway and has detected up to now more than 230 unstable slopes with significant postglacial deformation. This systematic mapping aims to detect future rock avalanches before they occur. The registered unstable rock slopes are stored in a database on unstable rock slopes developed and maintained by the Geological Survey of Norway. The main aims of this database are (1) to serve as a national archive for unstable rock slopes in Norway; (2) to serve for data collection and storage during field mapping; (3) to provide decision-makers with hazard zones and other necessary information on unstable rock slopes for land-use planning and mitigation; and (4) to inform the public through an online map service. The database is organized hierarchically with a main point for each unstable rock slope to which several feature classes and tables are linked. This main point feature class includes several general attributes of the unstable rock slopes, such as site name, general and geological descriptions, executed works, recommendations, technical parameters (volume, lithology, mechanism and others), displacement rates, possible consequences, hazard and risk classification and so on. Feature classes and tables linked to the main feature class include the run-out area, the area effected by secondary effects, the hazard and risk classification, subareas and scenarios of an unstable rock slope, field observation points, displacement measurement stations, URL links for further documentation and references. The database on unstable rock slopes in Norway will be publicly consultable through the online map service on www.skrednett.no in 2014. Only publicly relevant parts of the database will be shown in the online map service (e.g. processed results of displacement measurements), while more detailed data will not (e.g. raw data of displacement measurements). Factsheets with key information on unstable rock slopes can be automatically generated and downloaded for each site, a municipality, a county or the entire country. Selected data will also be downloadable free of charge. The present database on unstable rock slopes in Norway will further evolve in the coming years as the systematic mapping conducted by the Geological Survey of Norway progresses and as available techniques and tools evolve.

[Tracing the map of medication errors outside the hospital environment in the Madrid Community].

PubMed

Taravilla-Cerdán, Belén; Larrubia-Muñoz, Olga; de la Corte-García, María; Cruz-Martos, Encarnación

2011-12-01

Preparation of a map of medication errors reported by health professionals outside hospitals within the framework of Medication Errors Reporting for the Community of Madrid during the period 2008-2009. Retrospective observational study. Notification database of medication errors in the Community of Madrid. Notifications sent to the web page: Safe Use of Medicines and Health Products of the Community of Madrid. Information on the originator of the report, date of incident, shift, type of error and causes, outcome, patient characteristics, stage, place where it was produced and detected, if the medication was administered, lot number, expiry date and the general nature of the drug and a brief description of the incident. There were 5470 medication errors analysed, of which 3412 came from outside hospitals (62%), occurring mainly in the prescription stage (56.92%) and being more reported pharmacists. No harm was done in 92.9% of cases, but there was harm in 4.8% and in 2.3% there was an error that could not be followed up. The centralization of information has led to the confirmation that the prescription is a vulnerable point in the chain of drug therapy. Cleaning up prescription databases, preventing the marketing of commercial presentations that give rise to confusion, enhanced information to professionals and patients, and establishing standardised procedures, and avoiding the use of ambiguous prescriptions, illegible, or abbreviations, are useful strategies to try to minimise these errors. Copyright © 2010 Elsevier España, S.L. All rights reserved.

A GIS-based DRASTIC model for assessing intrinsic groundwater vulnerability in northeastern Missan governorate, southern Iraq

NASA Astrophysics Data System (ADS)

Al-Abadi, Alaa M.; Al-Shamma'a, Ayser M.; Aljabbari, Mukdad H.

2017-03-01

In this study, intrinsic groundwater vulnerability for the shallow aquifer in northeastern Missan governorate, south of Iraq is evaluated using commonly used DRASTIC model in framework of GIS environment. Preparation of DRASTIC parameters is attained through gathering data from different sources including field survey, geological and meteorological data, a digital elevation model DEM of the study area, archival database, and published research. The different data used to build DRASTIC model are arranged in a geospatial database using spatial analyst extension of ArcGIS 10.2 software. The obtained results related to the vulnerability to general contaminants show that the study area is characterized by two vulnerability zones: low and moderate. Ninety-four percentage (94 %) of the study area has a low class of groundwater vulnerability to contamination, whereas a total of (6 %) of the study area has moderate vulnerability. The pesticides DRASTIC index map shows that the study area is also characterized by two zones of vulnerability: low and moderate. The DRASTIC map of this version clearly shows that small percentage (13 %) of the study area has low vulnerability to contamination, and most parts have moderate vulnerability (about 87 %). The final results indicate that the aquifer system in the interested area is relatively protected from contamination on the groundwater surface. To mitigate the contamination risks in the moderate vulnerability zones, a protective measure must be put before exploiting the aquifer and before comprehensive agricultural activities begin in the area.

Vegetation classification and distribution mapping report Mesa Verde National Park

USGS Publications Warehouse

Thomas, Kathryn A.; McTeague, Monica L.; Ogden, Lindsay; Floyd, M. Lisa; Schulz, Keith; Friesen, Beverly A.; Fancher, Tammy; Waltermire, Robert G.; Cully, Anne

2009-01-01

The classification and distribution mapping of the vegetation of Mesa Verde National Park (MEVE) and surrounding environment was achieved through a multi-agency effort between 2004 and 2007. The National Park Service’s Southern Colorado Plateau Network facilitated the team that conducted the work, which comprised the U.S. Geological Survey’s Southwest Biological Science Center, Fort Collins Research Center, and Rocky Mountain Geographic Science Center; Northern Arizona University; Prescott College; and NatureServe. The project team described 47 plant communities for MEVE, 34 of which were described from quantitative classification based on f eld-relevé data collected in 1993 and 2004. The team derived 13 additional plant communities from field observations during the photointerpretation phase of the project. The National Vegetation Classification Standard served as a framework for classifying these plant communities to the alliance and association level. Eleven of the 47 plant communities were classified as “park specials;” that is, plant communities with insufficient data to describe them as new alliances or associations. The project team also developed a spatial vegetation map database representing MEVE, with three different map-class schemas: base, group, and management map classes. The base map classes represent the fi nest level of spatial detail. Initial polygons were developed using Definiens Professional (at the time of our use, this software was called eCognition), assisted by interpretation of 1:12,000 true-color digital orthophoto quarter quadrangles (DOQQs). These polygons (base map classes) were labeled using manual photo interpretation of the DOQQs and 1:12,000 true-color aerial photography. Field visits verified interpretation concepts. The vegetation map database includes 46 base map classes, which consist of associations, alliances, and park specials classified with quantitative analysis, additional associations and park specials noted during photointerpretation, and non-vegetated land cover, such as infrastructure, land use, and geological land cover. The base map classes consist of 5,007 polygons in the project area. A field-based accuracy assessment of the base map classes showed overall accuracy to be 43.5%. Seven map classes comprise 89.1% of the park vegetated land cover. The group map classes represent aggregations of the base map classes, approximating the group level of the National Vegetation Classification Standard, version 2 (Federal Geographic Data Committee 2007), and reflecting physiognomy and floristics. Terrestrial ecological systems, as described by NatureServe (Comer et al. 2003), were used as the fi rst approximation of the group level. The project team identified 14 group map classes for this project. The overall accuracy of the group map classes was determined using the same accuracy assessment data as for the base map classes. The overall accuracy of the group representation of vegetation was 80.3%. In consultation with park staff , the team developed management map classes, consisting of park-defined groupings of base map classes intended to represent a balance between maintaining required accuracy and providing a focus on vegetation of particular interest or import to park managers. The 23 management map classes had an overall accuracy of 73.3%. While the main products of this project are the vegetation classification and the vegetation map database, a number of ancillary digital geographic information system and database products were also produced that can be used independently or to augment the main products. These products include shapefiles of the locations of field-collected data and relational databases of field-collected data.

Enhanced digital mapping project : final report

DOT National Transportation Integrated Search

2004-11-19

The Enhanced Digital Map Project (EDMap) was a three-year effort launched in April 2001 to develop a range of digital map database enhancements that enable or improve the performance of driver assistance systems currently under development or conside...

Recently active traces of the Bartlett Springs Fault, California: a digital database

USGS Publications Warehouse

Lienkaemper, James J.

2010-01-01

The purpose of this map is to show the location of and evidence for recent movement on active fault traces within the Bartlett Springs Fault Zone, California. The location and recency of the mapped traces is primarily based on geomorphic expression of the fault as interpreted from large-scale aerial photography. In a few places, evidence of fault creep and offset Holocene strata in trenches and natural exposures have confirmed the activity of some of these traces. This publication is formatted both as a digital database for use within a geographic information system (GIS) and for broader public access as map images that may be browsed on-line or download a summary map. The report text describes the types of scientific observations used to make the map, gives references pertaining to the fault and the evidence of faulting, and provides guidance for use of and limitations of the map.

DNA Probe Pooling for Rapid Delineation of Chromosomal Breakpoints

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lu, Chun-Mei; Kwan, Johnson; Baumgartner, Adolf

2009-01-30

Structural chromosome aberrations are hallmarks of many human genetic diseases. The precise mapping of translocation breakpoints in tumors is important for identification of genes with altered levels of expression, prediction of tumor progression, therapy response, or length of disease-free survival as well as the preparation of probes for detection of tumor cells in peripheral blood. Similarly, in vitro fertilization (IVF) and preimplantation genetic diagnosis (PGD) for carriers of balanced, reciprocal translocations benefit from accurate breakpoint maps in the preparation of patient-specific DNA probes followed by a selection of normal or balanced oocytes or embryos. We expedited the process of breakpointmore » mapping and preparation of case-specific probes by utilizing physically mapped bacterial artificial chromosome (BAC) clones. Historically, breakpoint mapping is based on the definition of the smallest interval between proximal and distal probes. Thus, many of the DNA probes prepared for multi-clone and multi-color mapping experiments do not generate additional information. Our pooling protocol described here with examples from thyroid cancer research and PGD accelerates the delineation of translocation breakpoints without sacrificing resolution. The turnaround time from clone selection to mapping results using tumor or IVF patient samples can be as short as three to four days.« less

Mars Global Digital Dune Database: MC2-MC29

USGS Publications Warehouse

Hayward, Rosalyn K.; Mullins, Kevin F.; Fenton, L.K.; Hare, T.M.; Titus, T.N.; Bourke, M.C.; Colaprete, Anthony; Christensen, P.R.

2007-01-01

Introduction The Mars Global Digital Dune Database presents data and describes the methodology used in creating the database. The database provides a comprehensive and quantitative view of the geographic distribution of moderate- to large-size dune fields from 65? N to 65? S latitude and encompasses ~ 550 dune fields. The database will be expanded to cover the entire planet in later versions. Although we have attempted to include all dune fields between 65? N and 65? S, some have likely been excluded for two reasons: 1) incomplete THEMIS IR (daytime) coverage may have caused us to exclude some moderate- to large-size dune fields or 2) resolution of THEMIS IR coverage (100m/pixel) certainly caused us to exclude smaller dune fields. The smallest dune fields in the database are ~ 1 km2 in area. While the moderate to large dune fields are likely to constitute the largest compilation of sediment on the planet, smaller stores of sediment of dunes are likely to be found elsewhere via higher resolution data. Thus, it should be noted that our database excludes all small dune fields and some moderate to large dune fields as well. Therefore the absence of mapped dune fields does not mean that such dune fields do not exist and is not intended to imply a lack of saltating sand in other areas. Where availability and quality of THEMIS visible (VIS) or Mars Orbiter Camera narrow angle (MOC NA) images allowed, we classifed dunes and included dune slipface measurements, which were derived from gross dune morphology and represent the prevailing wind direction at the last time of significant dune modification. For dunes located within craters, the azimuth from crater centroid to dune field centroid was calculated. Output from a general circulation model (GCM) is also included. In addition to polygons locating dune fields, the database includes over 1800 selected Thermal Emission Imaging System (THEMIS) infrared (IR), THEMIS visible (VIS) and Mars Orbiter Camera Narrow Angle (MOC NA) images that were used to build the database. The database is presented in a variety of formats. It is presented as a series of ArcReader projects which can be opened using the free ArcReader software. The latest version of ArcReader can be downloaded at http://www.esri.com/software/arcgis/arcreader/download.html. The database is also presented in ArcMap projects. The ArcMap projects allow fuller use of the data, but require ESRI ArcMap? software. Multiple projects were required to accommodate the large number of images needed. A fuller description of the projects can be found in the Dunes_ReadMe file and the ReadMe_GIS file in the Documentation folder. For users who prefer to create their own projects, the data is available in ESRI shapefile and geodatabase formats, as well as the open Geographic Markup Language (GML) format. A printable map of the dunes and craters in the database is available as a Portable Document Format (PDF) document. The map is also included as a JPEG file. ReadMe files are available in PDF and ASCII (.txt) files. Tables are available in both Excel (.xls) and ASCII formats.

Index of flood maps prepared by the U.S. Geological Survey through 1973

USGS Publications Warehouse

Carrigan, Philip Hadley

1974-01-01

A listing is presented of flood maps prepared by the U.S. Geological Survey through 1973. Maps are listed by State and county and the list provides information on the type of flooding depicted and the reliability of the delineation.The list was prepared from a computer file, and an available program allows retrieval of data by land-line location, State and county, and Standard Metropolitan Statistical Area (SMSA). The file will be continuously updated.

What is an evidence map? A systematic review of published evidence maps and their definitions, methods, and products.

PubMed

Miake-Lye, Isomi M; Hempel, Susanne; Shanman, Roberta; Shekelle, Paul G

2016-02-10

The need for systematic methods for reviewing evidence is continuously increasing. Evidence mapping is one emerging method. There are no authoritative recommendations for what constitutes an evidence map or what methods should be used, and anecdotal evidence suggests heterogeneity in both. Our objectives are to identify published evidence maps and to compare and contrast the presented definitions of evidence mapping, the domains used to classify data in evidence maps, and the form the evidence map takes. We conducted a systematic review of publications that presented results with a process termed "evidence mapping" or included a figure called an "evidence map." We identified publications from searches of ten databases through 8/21/2015, reference mining, and consulting topic experts. We abstracted the research question, the unit of analysis, the search methods and search period covered, and the country of origin. Data were narratively synthesized. Thirty-nine publications met inclusion criteria. Published evidence maps varied in their definition and the form of the evidence map. Of the 31 definitions provided, 67 % described the purpose as identification of gaps and 58 % referenced a stakeholder engagement process or user-friendly product. All evidence maps explicitly used a systematic approach to evidence synthesis. Twenty-six publications referred to a figure or table explicitly called an "evidence map," eight referred to an online database as the evidence map, and five stated they used a mapping methodology but did not present a visual depiction of the evidence. The principal conclusion of our evaluation of studies that call themselves "evidence maps" is that the implied definition of what constitutes an evidence map is a systematic search of a broad field to identify gaps in knowledge and/or future research needs that presents results in a user-friendly format, often a visual figure or graph, or a searchable database. Foundational work is needed to better standardize the methods and products of an evidence map so that researchers and policymakers will know what to expect of this new type of evidence review. Although an a priori protocol was developed, no registration was completed; this review did not fit the PROSPERO format.

Southern Salish Sea Habitat Map Series data catalog

USGS Publications Warehouse

Cochrane, Guy R.

2015-01-01

This data catalog contains much of the data used to prepare the SIMs in the Southern Salish Sea Habitat Map Series. Other data that were used to prepare the maps were compiled from previously published sources (for example, sediment samples and seismic reflection profiles) and are not included in this data series.

Blood Vessel Extraction in Color Retinal Fundus Images with Enhancement Filtering and Unsupervised Classification

PubMed Central

2017-01-01

Retinal blood vessels have a significant role in the diagnosis and treatment of various retinal diseases such as diabetic retinopathy, glaucoma, arteriosclerosis, and hypertension. For this reason, retinal vasculature extraction is important in order to help specialists for the diagnosis and treatment of systematic diseases. In this paper, a novel approach is developed to extract retinal blood vessel network. Our method comprises four stages: (1) preprocessing stage in order to prepare dataset for segmentation; (2) an enhancement procedure including Gabor, Frangi, and Gauss filters obtained separately before a top-hat transform; (3) a hard and soft clustering stage which includes K-means and Fuzzy C-means (FCM) in order to get binary vessel map; and (4) a postprocessing step which removes falsely segmented isolated regions. The method is tested on color retinal images obtained from STARE and DRIVE databases which are available online. As a result, Gabor filter followed by K-means clustering method achieves 95.94% and 95.71% of accuracy for STARE and DRIVE databases, respectively, which are acceptable for diagnosis systems. PMID:29065611

A web-based system architecture for ontology-based data integration in the domain of IT benchmarking

NASA Astrophysics Data System (ADS)

Pfaff, Matthias; Krcmar, Helmut

2018-03-01

In the domain of IT benchmarking (ITBM), a variety of data and information are collected. Although these data serve as the basis for business analyses, no unified semantic representation of such data yet exists. Consequently, data analysis across different distributed data sets and different benchmarks is almost impossible. This paper presents a system architecture and prototypical implementation for an integrated data management of distributed databases based on a domain-specific ontology. To preserve the semantic meaning of the data, the ITBM ontology is linked to data sources and functions as the central concept for database access. Thus, additional databases can be integrated by linking them to this domain-specific ontology and are directly available for further business analyses. Moreover, the web-based system supports the process of mapping ontology concepts to external databases by introducing a semi-automatic mapping recommender and by visualizing possible mapping candidates. The system also provides a natural language interface to easily query linked databases. The expected result of this ontology-based approach of knowledge representation and data access is an increase in knowledge and data sharing in this domain, which will enhance existing business analysis methods.

Geologic and geophysical maps of the eastern three-fourths of the Cambria 30' x 60' quadrangle, central California Coast Ranges

USGS Publications Warehouse

Graymer, R.W.; Langenheim, V.E.; Roberts, M.A.; McDougall, Kristin

2014-01-01

The Cambria 30´ x 60´ quadrangle comprises southwestern Monterey County and northwestern San Luis Obispo County. The land area includes rugged mountains of the Santa Lucia Range extending from the northwest to the southeast part of the map; the southern part of the Big Sur coast in the northwest; broad marine terraces along the southwest coast; and broadvalleys, rolling hills, and modest mountains in the northeast. This report contains geologic, gravity anomaly, and aeromagnetic anomaly maps of the eastern three-fourths of the 1:100,000-scale Cambria quadrangle and the associated geologic and geophysical databases (ArcMap databases), as well as complete descriptions of the geologic map units and the structural relations in the mapped area. A cross section is based on both the geologic map and potential-field geophysical data. The maps are presented as an interactive, multilayer PDF, rather than more traditional pre-formatted map-sheet PDFs. Various geologic, geophysical, paleontological, and base map elements are placed on separate layers, which allows the user to combine elements interactively to create map views beyond the traditional map sheets. Four traditional map sheets (geologic map, gravity map, aeromagnetic map, paleontological locality map) are easily compiled by choosing the associated data layers or by choosing the desired map under Bookmarks.

ReactionMap: an efficient atom-mapping algorithm for chemical reactions.

PubMed

Fooshee, David; Andronico, Alessio; Baldi, Pierre

2013-11-25

Large databases of chemical reactions provide new data-mining opportunities and challenges. Key challenges result from the imperfect quality of the data and the fact that many of these reactions are not properly balanced or atom-mapped. Here, we describe ReactionMap, an efficient atom-mapping algorithm. Our approach uses a combination of maximum common chemical subgraph search and minimization of an assignment cost function derived empirically from training data. We use a set of over 259,000 balanced atom-mapped reactions from the SPRESI commercial database to train the system, and we validate it on random sets of 1000 and 17,996 reactions sampled from this pool. These large test sets represent a broad range of chemical reaction types, and ReactionMap correctly maps about 99% of the atoms and about 96% of the reactions, with a mean time per mapping of 2 s. Most correctly mapped reactions are mapped with high confidence. Mapping accuracy compares favorably with ChemAxon's AutoMapper, versions 5 and 6.1, and the DREAM Web tool. These approaches correctly map 60.7%, 86.5%, and 90.3% of the reactions, respectively, on the same data set. A ReactionMap server is available on the ChemDB Web portal at http://cdb.ics.uci.edu .

A Framework for Mapping User-Designed Forms to Relational Databases

ERIC Educational Resources Information Center

Khare, Ritu

2011-01-01

In the quest for database usability, several applications enable users to design custom forms using a graphical interface, and forward engineer the forms into new databases. The path-breaking aspect of such applications is that users are completely shielded from the technicalities of database creation. Despite this innovation, the process of…

Exploring the potential offered by legacy soil databases for ecosystem services mapping of Central African soils

NASA Astrophysics Data System (ADS)

Verdoodt, Ann; Baert, Geert; Van Ranst, Eric

2014-05-01

Central African soil resources are characterised by a large variability, ranging from stony, shallow or sandy soils with poor life-sustaining capabilities to highly weathered soils that recycle and support large amounts of biomass. Socio-economic drivers within this largely rural region foster inappropriate land use and management, threaten soil quality and finally culminate into a declining soil productivity and increasing food insecurity. For the development of sustainable land use strategies targeting development planning and natural hazard mitigation, decision makers often rely on legacy soil maps and soil profile databases. Recent development cooperation financed projects led to the design of soil information systems for Rwanda, D.R. Congo, and (ongoing) Burundi. A major challenge is to exploit these existing soil databases and convert them into soil inference systems through an optimal combination of digital soil mapping techniques, land evaluation tools, and biogeochemical models. This presentation aims at (1) highlighting some key characteristics of typical Central African soils, (2) assessing the positional, geographic and semantic quality of the soil information systems, and (3) revealing its potential impacts on the use of these datasets for thematic mapping of soil ecosystem services (e.g. organic carbon storage, pH buffering capacity). Soil map quality is assessed considering positional and semantic quality, as well as geographic completeness. Descriptive statistics, decision tree classification and linear regression techniques are used to mine the soil profile databases. Geo-matching as well as class-matching approaches are considered when developing thematic maps. Variability in inherent as well as dynamic soil properties within the soil taxonomic units is highlighted. It is hypothesized that within-unit variation in soil properties highly affects the use and interpretation of thematic maps for ecosystem services mapping. Results will mainly be based on analyses done in Rwanda, but can be complemented with ongoing research results or prospects for Burundi.

From 20th century metabolic wall charts to 21st century systems biology: database of mammalian metabolic enzymes

PubMed Central

Corcoran, Callan C.; Grady, Cameron R.; Pisitkun, Trairak; Parulekar, Jaya

2017-01-01

The organization of the mammalian genome into gene subsets corresponding to specific functional classes has provided key tools for systems biology research. Here, we have created a web-accessible resource called the Mammalian Metabolic Enzyme Database (https://hpcwebapps.cit.nih.gov/ESBL/Database/MetabolicEnzymes/MetabolicEnzymeDatabase.html) keyed to the biochemical reactions represented on iconic metabolic pathway wall charts created in the previous century. Overall, we have mapped 1,647 genes to these pathways, representing ~7 percent of the protein-coding genome. To illustrate the use of the database, we apply it to the area of kidney physiology. In so doing, we have created an additional database (Database of Metabolic Enzymes in Kidney Tubule Segments: https://hpcwebapps.cit.nih.gov/ESBL/Database/MetabolicEnzymes/), mapping mRNA abundance measurements (mined from RNA-Seq studies) for all metabolic enzymes to each of 14 renal tubule segments. We carry out bioinformatics analysis of the enzyme expression pattern among renal tubule segments and mine various data sources to identify vasopressin-regulated metabolic enzymes in the renal collecting duct. PMID:27974320

Querying XML Data with SPARQL

NASA Astrophysics Data System (ADS)

Bikakis, Nikos; Gioldasis, Nektarios; Tsinaraki, Chrisa; Christodoulakis, Stavros

SPARQL is today the standard access language for Semantic Web data. In the recent years XML databases have also acquired industrial importance due to the widespread applicability of XML in the Web. In this paper we present a framework that bridges the heterogeneity gap and creates an interoperable environment where SPARQL queries are used to access XML databases. Our approach assumes that fairly generic mappings between ontology constructs and XML Schema constructs have been automatically derived or manually specified. The mappings are used to automatically translate SPARQL queries to semantically equivalent XQuery queries which are used to access the XML databases. We present the algorithms and the implementation of SPARQL2XQuery framework, which is used for answering SPARQL queries over XML databases.

Map and data for Quaternary faults and folds in New Mexico

USGS Publications Warehouse

Machette, M.N.; Personius, S.F.; Kelson, K.I.; Haller, K.M.; Dart, R.L.

1998-01-01

The "World Map of Major Active Faults" Task Group is compiling a series of digital maps for the United States and other countries in the Western Hemisphere that show the locations, ages, and activity rates of major earthquake-related features such as faults and fault-related folds; the companion database includes published information on these seismogenic features. The Western Hemisphere effort is sponsored by International Lithosphere Program (ILP) Task Group H-2, whereas the effort to compile a new map and database for the United States is funded by the Earthquake Reduction Program (ERP) through the U.S. Geological Survey. The maps and accompanying databases represent a key contribution to the new Global Seismic Hazards Assessment Program (ILP Task Group II-O) for the International Decade for Natural Disaster Reduction. This compilation, which describes evidence for surface faulting and folding in New Mexico, is the third of many similar State and regional compilations that are planned for the U.S. The compilation for West Texas is available as U.S. Geological Survey Open-File Report 96-002 (Collins and others, 1996 #993) and the compilation for Montana will be released as a Montana Bureau of Mines product (Haller and others, in press #1750).

BrainMap VBM: An environment for structural meta-analysis.

PubMed

Vanasse, Thomas J; Fox, P Mickle; Barron, Daniel S; Robertson, Michaela; Eickhoff, Simon B; Lancaster, Jack L; Fox, Peter T

2018-05-02

The BrainMap database is a community resource that curates peer-reviewed, coordinate-based human neuroimaging literature. By pairing the results of neuroimaging studies with their relevant meta-data, BrainMap facilitates coordinate-based meta-analysis (CBMA) of the neuroimaging literature en masse or at the level of experimental paradigm, clinical disease, or anatomic location. Initially dedicated to the functional, task-activation literature, BrainMap is now expanding to include voxel-based morphometry (VBM) studies in a separate sector, titled: BrainMap VBM. VBM is a whole-brain, voxel-wise method that measures significant structural differences between or within groups which are reported as standardized, peak x-y-z coordinates. Here we describe BrainMap VBM, including the meta-data structure, current data volume, and automated reverse inference functions (region-to-disease profile) of this new community resource. CBMA offers a robust methodology for retaining true-positive and excluding false-positive findings across studies in the VBM literature. As with BrainMap's functional database, BrainMap VBM may be synthesized en masse or at the level of clinical disease or anatomic location. As a use-case scenario for BrainMap VBM, we illustrate a trans-diagnostic data-mining procedure wherein we explore the underlying network structure of 2,002 experiments representing over 53,000 subjects through independent components analysis (ICA). To reduce data-redundancy effects inherent to any database, we demonstrate two data-filtering approaches that proved helpful to ICA. Finally, we apply hierarchical clustering analysis (HCA) to measure network- and disease-specificity. This procedure distinguished psychiatric from neurological diseases. We invite the neuroscientific community to further exploit BrainMap VBM with other modeling approaches. © 2018 Wiley Periodicals, Inc.

Improvements in the Protein Identifier Cross-Reference service.

PubMed

Wein, Samuel P; Côté, Richard G; Dumousseau, Marine; Reisinger, Florian; Hermjakob, Henning; Vizcaíno, Juan A

2012-07-01

The Protein Identifier Cross-Reference (PICR) service is a tool that allows users to map protein identifiers, protein sequences and gene identifiers across over 100 different source databases. PICR takes input through an interactive website as well as Representational State Transfer (REST) and Simple Object Access Protocol (SOAP) services. It returns the results as HTML pages, XLS and CSV files. It has been in production since 2007 and has been recently enhanced to add new functionality and increase the number of databases it covers. Protein subsequences can be Basic Local Alignment Search Tool (BLAST) against the UniProt Knowledgebase (UniProtKB) to provide an entry point to the standard PICR mapping algorithm. In addition, gene identifiers from UniProtKB and Ensembl can now be submitted as input or mapped to as output from PICR. We have also implemented a 'best-guess' mapping algorithm for UniProt. In this article, we describe the usefulness of PICR, how these changes have been implemented, and the corresponding additions to the web services. Finally, we explain that the number of source databases covered by PICR has increased from the initial 73 to the current 102. New resources include several new species-specific Ensembl databases as well as the Ensembl Genome ones. PICR can be accessed at http://www.ebi.ac.uk/Tools/picr/.

The National Landslide Database of Great Britain: Acquisition, communication and the role of social media

NASA Astrophysics Data System (ADS)

Pennington, Catherine; Freeborough, Katy; Dashwood, Claire; Dijkstra, Tom; Lawrie, Kenneth

2015-11-01

The British Geological Survey (BGS) is the national geological agency for Great Britain that provides geoscientific information to government, other institutions and the public. The National Landslide Database has been developed by the BGS and is the focus for national geohazard research for landslides in Great Britain. The history and structure of the geospatial database and associated Geographical Information System (GIS) are explained, along with the future developments of the database and its applications. The database is the most extensive source of information on landslides in Great Britain with over 17,000 records of landslide events to date, each documented as fully as possible for inland, coastal and artificial slopes. Data are gathered through a range of procedures, including: incorporation of other databases; automated trawling of current and historical scientific literature and media reports; new field- and desk-based mapping technologies with digital data capture, and using citizen science through social media and other online resources. This information is invaluable for directing the investigation, prevention and mitigation of areas of unstable ground in accordance with Government planning policy guidelines. The national landslide susceptibility map (GeoSure) and a national landslide domains map currently under development, as well as regional mapping campaigns, rely heavily on the information contained within the landslide database. Assessing susceptibility to landsliding requires knowledge of the distribution of failures, an understanding of causative factors, their spatial distribution and likely impacts, whilst understanding the frequency and types of landsliding present is integral to modelling how rainfall will influence the stability of a region. Communication of landslide data through the Natural Hazard Partnership (NHP) and Hazard Impact Model contributes to national hazard mitigation and disaster risk reduction with respect to weather and climate. Daily reports of landslide potential are published by BGS through the NHP partnership and data collected for the National Landslide Database are used widely for the creation of these assessments. The National Landslide Database is freely available via an online GIS and is used by a variety of stakeholders for research purposes.

Documentation and Cultural Heritage Inventories - Case of the Historic City of Ahmadabad

NASA Astrophysics Data System (ADS)

Shah, K.

2015-08-01

Located in the western Indian state of Gujarat, the historic city of Ahmadabad is renowned for the unparalleled richness of its monumental architecture, traditional house form, community based settlement patterns, city structure, crafts and mercantile culture. This paper describes the process followed for documentation and development of comprehensive Heritage Inventories for the historic city with an aim of illustrating the Outstanding Universal Values of its Architectural and Urban Heritage. The exercise undertaken between 2011 & 2014 as part of the preparation of world heritage nomination dossier included thorough archival research, field surveys, mapping and preparation of inventories using a combination of traditional data procurement and presentation tools as well as creation of advanced digital database using GIS. The major challenges encountered were: need to adapt documentation methodology and survey formats to field conditions, changing and ever widening scope of work, corresponding changes in time frame, management of large quantities of data generated during the process along with difficulties in correlating existing databases procured from the local authority in varying formats. While the end result satisfied the primary aim, the full potential of Heritage Inventory as a protection and management tool will only be realised after its acceptance as the statutory list and its integration within the larger urban development plan to guide conservation, development and management strategy for the city. The rather detailed description of evolution of documentation process and the complexities involved is presented to understand the relevance of methods used in Ahmadabad and guide similar future efforts in the field.

WOCAT mapping, GIS and the Góis municipality

NASA Astrophysics Data System (ADS)

Esteves, T. C. J.; Soares, J. A. A.; Ferreira, A. J. D.; Coelho, C. O. A.; Carreiras, M. A.; Lynden, G. V.

2012-04-01

In the scope of the goals of the association "The World Overview of Conservation Approaches and Technologies" (WOCAT), the established methodology intends to support the sustainable development of new techniques and the process of decision making in Sustainable Soil Management (SSM). Its main goal is to promote the co-existence with nature, in order to assure the wellbeing of upcoming generations. SSM is defined as the use of terrestrial resources, including soil, water, fauna, flora, for the production of goods that fulfill human needs, guaranteeing simultaneously a long-term productive potential for these resources, as well as the maintenance of their environmental functions. The EU-funded DESIRE (Desertification Mitigation & Remediation of Land: a global approach for local solutions) project is centered on SSM, having as a main goal the development and study of promising conservation, soil use and management strategies, therefore contributing for the protection of arid and semi-arid vulnerable areas. In Portugal, one of the main soil degradation and desertification agents are wildfires. There is consequently an urgent need to establish integrated conservation measures to reduce or prevent these occurrences. To do so, and for the DESIRE project, the WOCAT methodology was implemented, where it could be foreseen as 3 major questionnaires for: technologies (WOCAT Technologies), approaches (WOCAT Approaches) and mapping (WOCAT Mapping). The established methodology for WOCAT Mapping was created in order to attend the questions associated to the soil and water degradation, emphasizing the direct and socio-economic causes of this degradation. It evaluates what type of soil degradation is occurring, where, why and what actions are in practice in what respects to SSM. The association of this questionnaire to Geographical Information Systems (GIS) allows not only to produce maps, but also to calculate areas, taking into account several aspects of soil degradation and conservation. The map database and their outputs give a comprehensive and powerful tool to obtain a global vision of the degradation state of a given territory, at the desired local or regional scale. However for the selected study area, the Portuguese Góis Municipality, there was no base information prepared to be readily inserted in the geographical database. It was necessary to create the requested mapping units, so that the WOCAT Mapping questionnaire could be used.As a result, municipal cartography with 39 mapping units was obtained, and for each one, an exhaustive field work was made, allowing to characterize them in detail and answer the required information by WOCAT Mapping. These answers allowed creating a clearer image of what is happening in the territory in what respects to the used techniques, degradation degree and conservation measures applied. The all-important contact with the municipalities main stakeholders is an important aspect to refer, once they are the ones to help validate the obtained results for the WOCAT Mapping methodology, due to their extensive knowledge of the territory.

A digital version of the 1970 U.S. Geological Survey topographic map of the San Francisco Bay region, three sheets, 1:125,000

USGS Publications Warehouse

Aitken, Douglas S.

1997-01-01

This Open-File report is a digital topographic map database. It contains a digital version of the 1970 U.S. Geological Survey topographic map of the San Francisco Bay Region (3 sheets), at a scale of 1:125,000. These ARC/INFO coverages are in vector format. The vectorization process has distorted characters representing letters and numbers, as well as some road and other symbols, making them difficult to read in some instances. This pamphlet serves to introduce and describe the digital data. There is no paper map included in the Open-File report. The content and character of the database and methods of obtaining it are described herein.

Understanding the productive author who published papers in medicine using National Health Insurance Database: A systematic review and meta-analysis.

PubMed

Chien, Tsair-Wei; Chang, Yu; Wang, Hsien-Yi

2018-02-01

Many researchers used National Health Insurance database to publish medical papers which are often retrospective, population-based, and cohort studies. However, the author's research domain and academic characteristics are still unclear.By searching the PubMed database (Pubmed.com), we used the keyword of [Taiwan] and [National Health Insurance Research Database], then downloaded 2913 articles published from 1995 to 2017. Social network analysis (SNA), Gini coefficient, and Google Maps were applied to gather these data for visualizing: the most productive author; the pattern of coauthor collaboration teams; and the author's research domain denoted by abstract keywords and Pubmed MESH (medical subject heading) terms.Utilizing the 2913 papers from Taiwan's National Health Insurance database, we chose the top 10 research teams shown on Google Maps and analyzed one author (Dr. Kao) who published 149 papers in the database in 2015. In the past 15 years, we found Dr. Kao had 2987 connections with other coauthors from 13 research teams. The cooccurrence abstract keywords with the highest frequency are cohort study and National Health Insurance Research Database. The most coexistent MESH terms are tomography, X-ray computed, and positron-emission tomography. The strength of the author research distinct domain is very low (Gini < 0.40).SNA incorporated with Google Maps and Gini coefficient provides insight into the relationships between entities. The results obtained in this study can be applied for a comprehensive understanding of other productive authors in the field of academics.

The National Landslide Database and GIS for Great Britain: construction, development, data acquisition, application and communication

NASA Astrophysics Data System (ADS)

Pennington, Catherine; Dashwood, Claire; Freeborough, Katy

2014-05-01

The National Landslide Database has been developed by the British Geological Survey (BGS) and is the focus for national geohazard research for landslides in Great Britain. The history and structure of the geospatial database and associated Geographical Information System (GIS) are explained, along with the future developments of the database and its applications. The database is the most extensive source of information on landslides in Great Britain with over 16,500 records of landslide events, each documented as fully as possible. Data are gathered through a range of procedures, including: incorporation of other databases; automated trawling of current and historical scientific literature and media reports; new field- and desk-based mapping technologies with digital data capture, and crowd-sourcing information through social media and other online resources. This information is invaluable for the investigation, prevention and mitigation of areas of unstable ground in accordance with Government planning policy guidelines. The national landslide susceptibility map (GeoSure) and a national landslide domain map currently under development rely heavily on the information contained within the landslide database. Assessing susceptibility to landsliding requires knowledge of the distribution of failures and an understanding of causative factors and their spatial distribution, whilst understanding the frequency and types of landsliding present is integral to modelling how rainfall will influence the stability of a region. Communication of landslide data through the Natural Hazard Partnership (NHP) contributes to national hazard mitigation and disaster risk reduction with respect to weather and climate. Daily reports of landslide potential are published by BGS through the NHP and data collected for the National Landslide Database is used widely for the creation of these assessments. The National Landslide Database is freely available via an online GIS and is used by a variety of stakeholders for research purposes.

Preparing students for the ethical challenges on international health electives: A systematic review of the literature on educational interventions.

PubMed

Rahim, Anika; Knights Née Jones, Felicity; Fyfe, Molly; Alagarajah, Janagan; Baraitser, Paula

2016-09-01

International health electives pose specific ethical challenges for students travelling from to low and middle income countries. We undertook a systematic review of the literature on interventions to prepare students to identify ethical issues addressed, educational approaches and to collate evidence on the effectiveness of different strategies. We searched nine electronic databases of peer-reviewed literature and identified grey literature through key word searches; supplemented through citation mapping and expert consultation. Articles that described ethical training conducted by universities or professional bodies were included for review. We reviewed forty-four full text articles. Ten sources of published literature and seven sources of grey literature met our inclusion criteria. We identified thirteen ethical situations that students should be prepared to manage and eight generic skills to support this process. Most interventions were delivered before the elective, used case studies or guidelines. Some suggested ethical principles or a framework for analysis of ethical issues. Only two papers evaluated the intervention described. Our paper collates a small but growing body of work on education to prepare students to manage ethical issues. Ethical training should have elements that are delivered before, during and after the elective. Interventions should include case studies covering thirteen ethical issues identified here, linked to ethical principles and a process for responding to ethical issues. We suggest that evaluations of interventions are an important area for future research.

Make Your Own Mashup Maps

ERIC Educational Resources Information Center

Lucking, Robert A.; Christmann, Edwin P.; Whiting, Mervyn J.

2008-01-01

"Mashup" is a new technology term used to describe a web application that combines data or technology from several different sources. You can apply this concept in your classroom by having students create their own mashup maps. Google Maps provides you with the simple tools, map databases, and online help you'll need to quickly master this…

Geologic map and digital database of the Conejo Well 7.5 minute quadrangle, Riverside County, Southern California

USGS Publications Warehouse

Powell, Robert E.

2001-01-01

This data set maps and describes the geology of the Conejo Well 7.5 minute quadrangle, Riverside County, southern California. The quadrangle, situated in Joshua Tree National Park in the eastern Transverse Ranges physiographic and structural province, encompasses part of the northern Eagle Mountains and part of the south flank of Pinto Basin. It is underlain by a basement terrane comprising Proterozoic metamorphic rocks, Mesozoic plutonic rocks, and Mesozoic and Mesozoic or Cenozoic hypabyssal dikes. The basement terrane is capped by a widespread Tertiary erosion surface preserved in remnants in the Eagle Mountains and buried beneath Cenozoic deposits in Pinto Basin. Locally, Miocene basalt overlies the erosion surface. A sequence of at least three Quaternary pediments is planed into the north piedmont of the Eagle Mountains, each in turn overlain by successively younger residual and alluvial deposits. The Tertiary erosion surface is deformed and broken by north-northwest-trending, high-angle, dip-slip faults in the Eagle Mountains and an east-west trending system of high-angle dip- and left-slip faults. In and adjacent to the Conejo Well quadrangle, faults of the northwest-trending set displace Miocene sedimentary rocks and basalt deposited on the Tertiary erosion surface and Pliocene and (or) Pleistocene deposits that accumulated on the oldest pediment. Faults of this system appear to be overlain by Pleistocene deposits that accumulated on younger pediments. East-west trending faults are younger than and perhaps in part coeval with faults of the northwest-trending set. The Conejo Well database was created using ARCVIEW and ARC/INFO, which are geographical information system (GIS) software products of Envronmental Systems Research Institute (ESRI). The database consists of the following items: (1) a map coverage showing faults and geologic contacts and units, (2) a separate coverage showing dikes, (3) a coverage showing structural data, (4) a point coverage containing line ornamentation, and (5) a scanned topographic base at a scale of 1:24,000. The coverages include attribute tables for geologic units (polygons and regions), contacts (arcs), and site-specific data (points). The database, accompanied by a pamphlet file and this metadata file, also includes the following graphic and text products: (1) A portable document file (.pdf) containing a navigable graphic of the geologic map on a 1:24,000 topographic base. The map is accompanied by a marginal explanation consisting of a Description of Map and Database Units (DMU), a Correlation of Map and Database Units (CMU), and a key to point-and line-symbols. (2) Separate .pdf files of the DMU and CMU, individually. (3) A PostScript graphic-file containing the geologic map on a 1:24,000 topographic base accompanied by the marginal explanation. (4) A pamphlet that describes the database and how to access it. Within the database, geologic contacts , faults, and dikes are represented as lines (arcs), geologic units as polygons and regions, and site-specific data as points. Polygon, arc, and point attribute tables (.pat, .aat, and .pat, respectively) uniquely identify each geologic datum and link it to other tables (.rel) that provide more detailed geologic information.

Earthquake Model of the Middle East (EMME) Project: Active Fault Database for the Middle East Region

NASA Astrophysics Data System (ADS)

Gülen, L.; Wp2 Team

2010-12-01

The Earthquake Model of the Middle East (EMME) Project is a regional project of the umbrella GEM (Global Earthquake Model) project (http://www.emme-gem.org/). EMME project region includes Turkey, Georgia, Armenia, Azerbaijan, Syria, Lebanon, Jordan, Iran, Pakistan, and Afghanistan. Both EMME and SHARE projects overlap and Turkey becomes a bridge connecting the two projects. The Middle East region is tectonically and seismically very active part of the Alpine-Himalayan orogenic belt. Many major earthquakes have occurred in this region over the years causing casualties in the millions. The EMME project will use PSHA approach and the existing source models will be revised or modified by the incorporation of newly acquired data. More importantly the most distinguishing aspect of the EMME project from the previous ones will be its dynamic character. This very important characteristic is accomplished by the design of a flexible and scalable database that will permit continuous update, refinement, and analysis. A digital active fault map of the Middle East region is under construction in ArcGIS format. We are developing a database of fault parameters for active faults that are capable of generating earthquakes above a threshold magnitude of Mw≥5.5. Similar to the WGCEP-2007 and UCERF-2 projects, the EMME project database includes information on the geometry and rates of movement of faults in a “Fault Section Database”. The “Fault Section” concept has a physical significance, in that if one or more fault parameters change, a new fault section is defined along a fault zone. So far over 3,000 Fault Sections have been defined and parameterized for the Middle East region. A separate “Paleo-Sites Database” includes information on the timing and amounts of fault displacement for major fault zones. A digital reference library that includes the pdf files of the relevant papers, reports is also being prepared. Another task of the WP-2 of the EMME project is to prepare a strain and slip rate map of the Middle East region by basically compiling already published data. The third task is to calculate b-values, Mmax and determine the activity rates. New data and evidences will be interpreted to revise or modify the existing source models. A logic tree approach will be utilized for the areas where there is no consensus to encompass different interpretations. Finally seismic source zones in the Middle East region will be delineated using all available data. EMME Project WP2 Team: Levent Gülen, Murat Utkucu, M. Dinçer Köksal, Hilal Domaç, Yigit Ince, Mine Demircioglu, Shota Adamia, Nino Sandradze, Aleksandre Gvencadze, Arkadi Karakhanyan, Mher Avanesyan, Tahir Mammadli, Gurban Yetirmishli, Arif Axundov, Khaled Hessami, M. Asif Khan, M. Sayab.

Database resources of the National Center for Biotechnology Information: 2002 update

PubMed Central

Wheeler, David L.; Church, Deanna M.; Lash, Alex E.; Leipe, Detlef D.; Madden, Thomas L.; Pontius, Joan U.; Schuler, Gregory D.; Schriml, Lynn M.; Tatusova, Tatiana A.; Wagner, Lukas; Rapp, Barbara A.

2002-01-01

In addition to maintaining the GenBank nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides data analysis and retrieval resources that operate on the data in GenBank and a variety of other biological data made available through NCBI’s web site. NCBI data retrieval resources include Entrez, PubMed, LocusLink and the Taxonomy Browser. Data analysis resources include BLAST, Electronic PCR, OrfFinder, RefSeq, UniGene, HomoloGene, Database of Single Nucleotide Polymorphisms (dbSNP), Human Genome Sequencing, Human MapViewer, Human¡VMouse Homology Map, Cancer Chromosome Aberration Project (CCAP), Entrez Genomes, Clusters of Orthologous Groups (COGs) database, Retroviral Genotyping Tools, SAGEmap, Gene Expression Omnibus (GEO), Online Mendelian Inheritance in Man (OMIM), the Molecular Modeling Database (MMDB) and the Conserved Domain Database (CDD). Augmenting many of the web applications are custom implementations of the BLAST program optimized to search specialized data sets. All of the resources can be accessed through the NCBI home page at http://www.ncbi.nlm.nih.gov. PMID:11752242

Evaluation of extemporaneous oral itraconazole suspensions by dissolution profiles mapping.

PubMed

Tong, Henry H Y; Chan, Hokman; Du, Zhen; Zheng, Ying

2010-01-01

The objective of this study was to evaluate by dissolution profiles mapping five extemporaneous oral itraconazole suspensions reported in the literature. Dissolution profiles of the extemporaneous oral itraconazole preparations were mapped and correlated with their reported clinical data therein. Four out of five extemporaneous preparations had either too early or insufficient release of itraconazole during the dissolution study, potentially limiting the in vivo oral bioavailability in patients. Dissolution profiles in the remaining extemporaneous preparation was closely similar to that in commercial itraconazole capsules. Based on the reported clinical data and dissolution results in this study, the extemporaneous preparation proposed in a study by Ong and Fobes seems to be the most reasonable choice for our patients. Dissolution profile evaluation is an important quality-control parameter during the evaluation of extemporaneous preparations by pharmacists.

The Environmental Assessment and Management (TEAM) Guide; Rhode Island Supplement, Revised March 1998

DTIC Science & Technology

1998-03-01

Verify that Class I Landfills are located only in "till" areas as identified on the groundwater maps prepared by the U.S. Geological Survey and...are located in either "till" areas or "outwash" areas as identified on the groundwater maps prepared by the U.S. Geological Survey and are of the...groundwater maps prepared by the U.S. Geological Survey . Verify that Class I Landfills do not accept: - Type 6-Extremely Hazardous Waste - Type 2A--Highly

Regulations in the field of Geo-Information

NASA Astrophysics Data System (ADS)

Felus, Y.; Keinan, E.; Regev, R.

2013-10-01

The geomatics profession has gone through a major revolution during the last two decades with the emergence of advanced GNSS, GIS and Remote Sensing technologies. These technologies have changed the core principles and working procedures of geomatics professionals. For this reason, surveying and mapping regulations, standards and specifications should be updated to reflect these changes. In Israel, the "Survey Regulations" is the principal document that regulates the professional activities in four key areas geodetic control, mapping, cadastre and Georaphic information systems. Licensed Surveyors and mapping professionals in Israel are required to work according to those regulations. This year a new set of regulations have been published and include a few major amendments as follows: In the Geodesy chapter, horizontal control is officially based on the Israeli network of Continuously Operating GNSS Reference Stations (CORS). The regulations were phrased in a manner that will allow minor datum changes to the CORS stations due to Earth Crustal Movements. Moreover, the regulations permit the use of GNSS for low accuracy height measurements. In the Cadastre chapter, the most critical change is the move to Coordinate Based Cadastre (CBC). Each parcel corner point is ranked according to its quality (accuracy and clarity of definition). The highest ranking for a parcel corner is 1. A point with a rank of 1 is defined by its coordinates alone. Any other contradicting evidence is inferior to the coordinates values. Cadastral Information is stored and managed via the National Cadastral Databases. In the Mapping and GIS chapter; the traditional paper maps (ranked by scale) are replaced by digital maps or spatial databases. These spatial databases are ranked by their quality level. Quality level is determined (similar to the ISO19157 Standard) by logical consistency, completeness, positional accuracy, attribute accuracy, temporal accuracy and usability. Metadata is another critical component of any spatial database. Every component in a map should have a metadata identification, even if the map was compiled from multiple resources. The regulations permit the use of advanced sensors and mapping techniques including LIDAR and digita l cameras that have been certified and meet the defined criteria. The article reviews these new regulations and the decision that led to them.

Distinguishing between the Partial-Mapping Preparation Hypothesis and the Failure-to-Engage Hypothesis of Residual Switch Costs

ERIC Educational Resources Information Center

Lindsen, Job P.; de Jong, Ritske

2010-01-01

Lien, Ruthruff, Remington, & Johnston (2005) reported residual switch cost differences between stimulus-response (S-R) pairs and proposed the partial-mapping preparation (PMP) hypothesis, which states that advance preparation will typically be limited to a subset of S-R pairs because of structural capacity limitations, to account for these…

Geologic Map of the State of Hawai`i

USGS Publications Warehouse

Sherrod, David R.; Sinton, John M.; Watkins, Sarah E.; Brunt, Kelly M.

2007-01-01

About This Map The State's geology is presented on eight full-color map sheets, one for each of the major islands. These map sheets, the illustrative meat of the publication, can be downloaded in pdf format, ready to print. Map scale is 1:100,000 for most of the islands, so that each map is about 27 inches by 36 inches. The Island of Hawai`i, largest of the islands, is depicted at a smaller scale, 1:250,000, so that it, too, can be shown on 36-inch-wide paper. The new publication isn't limited strictly to its map depictions. Twenty years have passed since David Clague and Brent Dalrymple published a comprehensive report that summarized the geology of all the islands, and it has been even longer since the last edition of Gordon Macdonald's book, Islands in the Sea, was revised. Therefore the new statewide geologic map includes an 83-page explanatory pamphlet that revisits many of the concepts that have evolved in our geologic understanding of the eight main islands. The pamphlet includes simplified page-size geologic maps for each island, summaries of all the radiometric ages that have been gathered since about 1960, generalized depictions of geochemical analyses for each volcano's eruptive stages, and discussion of some outstanding topics that remain controversial or deserving of additional research. The pamphlet also contains a complete description of map units, which enumerates the characteristics for each of the state's many stratigraphic formations shown on the map sheets. Since the late 1980s, the audience for geologic maps has grown as desktop computers and map-based software have become increasingly powerful. Those who prefer the convenience and access offered by Geographic Information Systems (GIS) can also feast on this publication. An electronic database, suitable for most GIS software applications, is available for downloading. The GIS database is in an Earth projection widely employed throughout the State of Hawai`i, using the North American datum of 1983 and the Universal Transverse Mercator system projection to zone 4. 'This digital statewide map allows engineers, consultants, and scientists from many different fields to take advantage of the geologic database,' said John Sinton, a geology professor at the University of Hawai`i, whose new mapping of the Wai`anae Range (West O`ahu) appears on the map. Indeed, when a testing version was first made available, most requests came from biologists, archaeologists, and soil scientists interested in applying the map's GIS database to their ongoing investigations. Another area newly depicted on the map, in addition to the Wai`anae Range, is Haleakala volcano, East Maui. So too for the active lava flows of Kilauea volcano, Island of Hawai`i, where the landscape has continued to evolve in the ten years since publication of the Big Island's revised geologic map. For the other islands, much of the map is compiled from mapping published in the 1930-1960s. This reliance stems partly from shortage of funding to undertake entirely new mapping but is warranted by the exemplary mapping of those early experts. The boundaries of all map units are digitized to show correctly on modern topographic maps.

PineElm_SSRdb: a microsatellite marker database identified from genomic, chloroplast, mitochondrial and EST sequences of pineapple (Ananas comosus (L.) Merrill).

PubMed

Chaudhary, Sakshi; Mishra, Bharat Kumar; Vivek, Thiruvettai; Magadum, Santoshkumar; Yasin, Jeshima Khan

2016-01-01

Simple Sequence Repeats or microsatellites are resourceful molecular genetic markers. There are only few reports of SSR identification and development in pineapple. Complete genome sequence of pineapple available in the public domain can be used to develop numerous novel SSRs. Therefore, an attempt was made to identify SSRs from genomic, chloroplast, mitochondrial and EST sequences of pineapple which will help in deciphering genetic makeup of its germplasm resources. A total of 359511 SSRs were identified in pineapple (356385 from genome sequence, 45 from chloroplast sequence, 249 in mitochondrial sequence and 2832 from EST sequences). The list of EST-SSR markers and their details are available in the database. PineElm_SSRdb is an open source database available for non-commercial academic purpose at http://app.bioelm.com/ with a mapping tool which can develop circular maps of selected marker set. This database will be of immense use to breeders, researchers and graduates working on Ananas spp. and to others working on cross-species transferability of markers, investigating diversity, mapping and DNA fingerprinting.

Geology of the Cape Mendocino, Eureka, Garberville, and Southwestern Part of the Hayfork 30 x 60 Minute Quadrangles and Adjacent Offshore Area, Northern California

USGS Publications Warehouse

McLaughlin, Robert J.; Ellen, S.D.; Blake, M.C.; Jayko, Angela S.; Irwin, W.P.; Aalto, K.R.; Carver, G.A.; Clarke, S.H.; Barnes, J.B.; Cecil, J.D.; Cyr, K.A.

2000-01-01

Introduction These geologic maps and accompanying structure sections depict the geology and structure of much of northwestern California and the adjacent continental margin. The map area includes the Mendocino triple junction, which is the juncture of the North American continental plate with two plates of the Pacific ocean basin. The map area also encompasses major geographic and geologic provinces of northwestern California. The maps incorporate much previously unpublished geologic mapping done between 1980 and 1995, as well as published mapping done between about 1950 and 1978. To construct structure sections to mid-crustal depths, we integrate the surface geology with interpretations of crustal structure based on seismicity, gravity and aeromagnetic data, offshore structure, and seismic reflection and refraction data. In addition to describing major geologic and structural features of northwestern California, the geologic maps have the potential to address a number of societally relevant issues, including hazards from earthquakes, landslides, and floods and problems related to timber harvest, wildlife habitat, and changing land use. All of these topics will continue to be of interest in the region, as changing land uses and population density interact with natural conditions. In these interactions, it is critical that the policies and practices affecting man and the environment integrate an adequate understanding of the geology. This digital map database, compiled from previously published and unpublished data, and new mapping by the authors, represents the general distribution of bedrock and surficial deposits in the mapped area. Together with the accompanying text file (ceghmf.ps, ceghmf.pdf, ceghmf.txt), it provides current information on the geologic structure and stratigraphy of the area covered. The database delineates map units that are identified by general age and lithology following the stratigraphic nomenclature of the U.S. Geological Survey. The scale of the source maps limits the spatial resolution (scale) of the database to 1:100,000 or smaller.

Mapping Applications Center, National Mapping Division, U.S. Geological Survey

USGS Publications Warehouse

,

1996-01-01

The Mapping Applications Center (MAC), National Mapping Division (NMD), is the eastern regional center for coordinating the production, distribution, and sale of maps and digital products of the U.S. Geological Survey (USGS). It is located in the John Wesley Powell Federal Building in Reston, Va. The MAC's major functions are to (1) establish and manage cooperative mapping programs with State and Federal agencies; (2) perform new research in preparing and applying geospatial information; (3) prepare digital cartographic data, special purpose maps, and standard maps from traditional and classified source materials; (4) maintain the domestic names program of the United States; (5) manage the National Aerial Photography Program (NAPP); (6) coordinate the NMD's publications and outreach programs; and (7) direct the USGS mapprinting operations.

Active, capable, and potentially active faults - a paleoseismic perspective

USGS Publications Warehouse

Machette, M.N.

2000-01-01

Maps of faults (geologically defined source zones) may portray seismic hazards in a wide range of completeness depending on which types of faults are shown. Three fault terms - active, capable, and potential - are used in a variety of ways for different reasons or applications. Nevertheless, to be useful for seismic-hazards analysis, fault maps should encompass a time interval that includes several earthquake cycles. For example, if the common recurrence in an area is 20,000-50,000 years, then maps should include faults that are 50,000-100,000 years old (two to five typical earthquake cycles), thus allowing for temporal variability in slip rate and recurrence intervals. Conversely, in more active areas such as plate boundaries, maps showing faults that are <10,000 years old should include those with at least 2 to as many as 20 paleoearthquakes. For the International Lithosphere Programs' Task Group II-2 Project on Major Active Faults of the World our maps and database will show five age categories and four slip rate categories that allow one to select differing time spans and activity rates for seismic-hazard analysis depending on tectonic regime. The maps are accompanied by a database that describes evidence for Quaternary faulting, geomorphic expression, and paleoseismic parameters (slip rate, recurrence interval and time of most recent surface faulting). These maps and databases provide an inventory of faults that would be defined as active, capable, and potentially active for seismic-hazard assessments.

Revision of Time-Independent Probabilistic Seismic Hazard Maps for Alaska

USGS Publications Warehouse

Wesson, Robert L.; Boyd, Oliver S.; Mueller, Charles S.; Bufe, Charles G.; Frankel, Arthur D.; Petersen, Mark D.

2007-01-01

We present here time-independent probabilistic seismic hazard maps of Alaska and the Aleutians for peak ground acceleration (PGA) and 0.1, 0.2, 0.3, 0.5, 1.0 and 2.0 second spectral acceleration at probability levels of 2 percent in 50 years (annual probability of 0.000404), 5 percent in 50 years (annual probability of 0.001026) and 10 percent in 50 years (annual probability of 0.0021). These maps represent a revision of existing maps based on newly obtained data and assumptions reflecting best current judgments about methodology and approach. These maps have been prepared following the procedures and assumptions made in the preparation of the 2002 National Seismic Hazard Maps for the lower 48 States. A significant improvement relative to the 2002 methodology is the ability to include variable slip rate along a fault where appropriate. These maps incorporate new data, the responses to comments received at workshops held in Fairbanks and Anchorage, Alaska, in May, 2005, and comments received after draft maps were posted on the National Seismic Hazard Mapping Web Site. These maps will be proposed for adoption in future revisions to the International Building Code. In this documentation we describe the maps and in particular explain and justify changes that have been made relative to the 1999 maps. We are also preparing a series of experimental maps of time-dependent hazard that will be described in future documents.

1986 Year End Report for Road Following at Carnegie-Mellon

DTIC Science & Technology

1987-05-01

how to make them work efficiently. We designed a hierarchical structure and a monitor module which manages all parts of the hierarchy (see figure 1...database, called the Local Map, is managed by a program known as the Local Map Builder (LMB). Each module stores and retrieves information in the...knowledge-intensive modules, and a database manager that synchronizes the modules-is characteristic of a traditional blackboard system. Such a system is

Geologic map of Alaska

USGS Publications Warehouse

Wilson, Frederic H.; Hults, Chad P.; Mull, Charles G.; Karl, Susan M.

2015-12-31

This Alaska compilation is unique in that it is integrated with a rich database of information provided in the spatial datasets and standalone attribute databases. Within the spatial files every line and polygon is attributed to its original source; the references to these sources are contained in related tables, as well as in stand-alone tables. Additional attributes include typical lithology, geologic setting, and age range for the map units. Also included are tables of radiometric ages.

Computer-Aided Clinical Trial Recruitment Based on Domain-Specific Language Translation: A Case Study of Retinopathy of Prematurity

PubMed Central

2017-01-01

Reusing the data from healthcare information systems can effectively facilitate clinical trials (CTs). How to select candidate patients eligible for CT recruitment criteria is a central task. Related work either depends on DBA (database administrator) to convert the recruitment criteria to native SQL queries or involves the data mapping between a standard ontology/information model and individual data source schema. This paper proposes an alternative computer-aided CT recruitment paradigm, based on syntax translation between different DSLs (domain-specific languages). In this paradigm, the CT recruitment criteria are first formally represented as production rules. The referenced rule variables are all from the underlying database schema. Then the production rule is translated to an intermediate query-oriented DSL (e.g., LINQ). Finally, the intermediate DSL is directly mapped to native database queries (e.g., SQL) automated by ORM (object-relational mapping). PMID:29065644

e23D: database and visualization of A-to-I RNA editing sites mapped to 3D protein structures.

PubMed

Solomon, Oz; Eyal, Eran; Amariglio, Ninette; Unger, Ron; Rechavi, Gidi

2016-07-15

e23D, a database of A-to-I RNA editing sites from human, mouse and fly mapped to evolutionary related protein 3D structures, is presented. Genomic coordinates of A-to-I RNA editing sites are converted to protein coordinates and mapped onto 3D structures from PDB or theoretical models from ModBase. e23D allows visualization of the protein structure, modeling of recoding events and orientation of the editing with respect to nearby genomic functional sites from databases of disease causing mutations and genomic polymorphism. http://www.sheba-cancer.org.il/e23D CONTACT: oz.solomon@live.biu.ac.il or Eran.Eyal@sheba.health.gov.il. © The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

Computer-Aided Clinical Trial Recruitment Based on Domain-Specific Language Translation: A Case Study of Retinopathy of Prematurity.

PubMed

Zhang, Yinsheng; Zhang, Guoming; Shang, Qian

2017-01-01

Reusing the data from healthcare information systems can effectively facilitate clinical trials (CTs). How to select candidate patients eligible for CT recruitment criteria is a central task. Related work either depends on DBA (database administrator) to convert the recruitment criteria to native SQL queries or involves the data mapping between a standard ontology/information model and individual data source schema. This paper proposes an alternative computer-aided CT recruitment paradigm, based on syntax translation between different DSLs (domain-specific languages). In this paradigm, the CT recruitment criteria are first formally represented as production rules. The referenced rule variables are all from the underlying database schema. Then the production rule is translated to an intermediate query-oriented DSL (e.g., LINQ). Finally, the intermediate DSL is directly mapped to native database queries (e.g., SQL) automated by ORM (object-relational mapping).

GEOGRAPHIC INFORMATION SYSTEM APPROACH FOR PLAY PORTFOLIOS TO IMPROVE OIL PRODUCTION IN THE ILLINOIS BASIN

DOE Office of Scientific and Technical Information (OSTI.GOV)

Beverly Seyler; John Grube

2004-12-10

Oil and gas have been commercially produced in Illinois for over 100 years. Existing commercial production is from more than fifty-two named pay horizons in Paleozoic rocks ranging in age from Middle Ordovician to Pennsylvanian. Over 3.2 billion barrels of oil have been produced. Recent calculations indicate that remaining mobile resources in the Illinois Basin may be on the order of several billion barrels. Thus, large quantities of oil, potentially recoverable using current technology, remain in Illinois oil fields despite a century of development. Many opportunities for increased production may have been missed due to complex development histories, multiple stackedmore » pays, and commingled production which makes thorough exploitation of pays and the application of secondary or improved/enhanced recovery strategies difficult. Access to data, and the techniques required to evaluate and manage large amounts of diverse data are major barriers to increased production of critical reserves in the Illinois Basin. These constraints are being alleviated by the development of a database access system using a Geographic Information System (GIS) approach for evaluation and identification of underdeveloped pays. The Illinois State Geological Survey has developed a methodology that is being used by industry to identify underdeveloped areas (UDAs) in and around petroleum reservoirs in Illinois using a GIS approach. This project utilizes a statewide oil and gas Oracle{reg_sign} database to develop a series of Oil and Gas Base Maps with well location symbols that are color-coded by producing horizon. Producing horizons are displayed as layers and can be selected as separate or combined layers that can be turned on and off. Map views can be customized to serve individual needs and page size maps can be printed. A core analysis database with over 168,000 entries has been compiled and assimilated into the ISGS Enterprise Oracle database. Maps of wells with core data have been generated. Data from over 1,700 Illinois waterflood units and waterflood areas have been entered into an Access{reg_sign} database. The waterflood area data has also been assimilated into the ISGS Oracle database for mapping and dissemination on the ArcIMS website. Formation depths for the Beech Creek Limestone, Ste. Genevieve Limestone and New Albany Shale in all of the oil producing region of Illinois have been calculated and entered into a digital database. Digital contoured structure maps have been constructed, edited and added to the ILoil website as map layers. This technology/methodology addresses the long-standing constraints related to information access and data management in Illinois by significantly simplifying the laborious process that industry presently must use to identify underdeveloped pay zones in Illinois.« less

De-MA: a web Database for electron Microprobe Analyses to assist EMP lab manager and users

NASA Astrophysics Data System (ADS)

Allaz, J. M.

2012-12-01

Lab managers and users of electron microprobe (EMP) facilities require comprehensive, yet flexible documentation structures, as well as an efficient scheduling mechanism. A single on-line database system for managing reservations, and providing information on standards, quantitative and qualitative setups (element mapping, etc.), and X-ray data has been developed for this purpose. This system is particularly useful in multi-user facilities where experience ranges from beginners to the highly experienced. New users and occasional facility users will find these tools extremely useful in developing and maintaining high quality, reproducible, and efficient analyses. This user-friendly database is available through the web, and uses MySQL as a database and PHP/HTML as script language (dynamic website). The database includes several tables for standards information, X-ray lines, X-ray element mapping, PHA, element setups, and agenda. It is configurable for up to five different EMPs in a single lab, each of them having up to five spectrometers and as many diffraction crystals as required. The installation should be done on a web server supporting PHP/MySQL, although installation on a personal computer is possible using third-party freeware to create a local Apache server, and to enable PHP/MySQL. Since it is web-based, any user outside the EMP lab can access this database anytime through any web browser and on any operating system. The access can be secured using a general password protection (e.g. htaccess). The web interface consists of 6 main menus. (1) "Standards" lists standards defined in the database, and displays detailed information on each (e.g. material type, name, reference, comments, and analyses). Images such as EDS spectra or BSE can be associated with a standard. (2) "Analyses" lists typical setups to use for quantitative analyses, allows calculation of mineral composition based on a mineral formula, or calculation of mineral formula based on a fixed amount of oxygen, or of cation (using an analysis in element or oxide weight-%); this latter includes re-calculation of H2O/CO2 based on stoichiometry, and oxygen correction for F and Cl. Another option offers a list of any available standards and possible peak or background interferences for a series of elements. (3) "X-ray maps" lists the different setups recommended for element mapping using WDS, and a map calculator to facilitate maps setups and to estimate the total mapping time. (4) "X-ray data" lists all x-ray lines for a specific element (K, L, M, absorption edges, and satellite peaks) in term of energy, wavelength and peak position. A check for possible interferences on peak or background is also possible. Theoretical x-ray peak positions for each crystal are calculated based on the 2d spacing of each crystal and the wavelength of each line. (5) "Agenda" menu displays the reservation dates for each month and for each EMP lab defined. It also offers a reservation request option, this request being sent by email to the EMP manager for approval. (6) Finally, "Admin" is password restricted, and contains all necessary options to manage the database through user-friendly forms. The installation of this database is made easy and knowledge of HTML, PHP, or MySQL is unnecessary to install, configure, manage, or use it. A working database is accessible at http://cub.geoloweb.ch.

Map and database of Quaternary faults in Venezuela and its offshore regions

USGS Publications Warehouse

Audemard, F.A.; Machette, M.N.; Cox, J.W.; Dart, R.L.; Haller, K.M.

2000-01-01

As part of the International Lithosphere Program’s “World Map of Major Active Faults,” the U.S. Geological Survey is assisting in the compilation of a series of digital maps of Quaternary faults and folds in Western Hemisphere countries. The maps show the locations, ages, and activity rates of major earthquake-related features such as faults and fault-related folds. They are accompanied by databases that describe these features and document current information on their activity in the Quaternary. The project is a key part of the Global Seismic Hazards Assessment Program (ILP Project II-0) for the International Decade for Natural Hazard Disaster Reduction.The project is sponsored by the International Lithosphere Program and funded by the USGS’s National Earthquake Hazards Reduction Program. The primary elements of the project are general supervision and interpretation of geologic/tectonic information, data compilation and entry for fault catalog, database design and management, and digitization and manipulation of data in †ARCINFO. For the compilation of data, we engaged experts in Quaternary faulting, neotectonics, paleoseismology, and seismology.

NADM Conceptual Model 1.0 -- A Conceptual Model for Geologic Map Information

USGS Publications Warehouse

,

2004-01-01

Executive Summary -- The NADM Data Model Design Team was established in 1999 by the North American Geologic Map Data Model Steering Committee (NADMSC) with the purpose of drafting a geologic map data model for consideration as a standard for developing interoperable geologic map-centered databases by state, provincial, and federal geological surveys. The model is designed to be a technology-neutral conceptual model that can form the basis for a web-based interchange format using evolving information technology (e.g., XML, RDF, OWL), and guide implementation of geoscience databases in a common conceptual framework. The intended purpose is to allow geologic information sharing between geologic map data providers and users, independent of local information system implementation. The model emphasizes geoscience concepts and relationships related to information presented on geologic maps. Design has been guided by an informal requirements analysis, documentation of existing databases, technology developments, and other standardization efforts in the geoscience and computer-science communities. A key aspect of the model is the notion that representation of the conceptual framework (ontology) that underlies geologic map data must be part of the model, because this framework changes with time and understanding, and varies between information providers. The top level of the model distinguishes geologic concepts, geologic representation concepts, and metadata. The geologic representation part of the model provides a framework for representing the ontology that underlies geologic map data through a controlled vocabulary, and for establishing the relationships between this vocabulary and a geologic map visualization or portrayal. Top-level geologic classes in the model are Earth material (substance), geologic unit (parts of the Earth), geologic age, geologic structure, fossil, geologic process, geologic relation, and geologic event.

Geologic and geophysical maps of the El Casco 7.5′ quadrangle, Riverside County, southern California, with accompanying geologic-map database

USGS Publications Warehouse

Matti, J.C.; Morton, D.M.; Langenheim, V.E.

2015-01-01

Geologic information contained in the El Casco database is general-purpose data applicable to land-related investigations in the earth and biological sciences. The term “general-purpose” means that all geologic-feature classes have minimal information content adequate to characterize their general geologic characteristics and to interpret their general geologic history. However, no single feature class has enough information to definitively characterize its properties and origin. For this reason the database cannot be used for site-specific geologic evaluations, although it can be used to plan and guide investigations at the site-specific level.

Extraction of Data from a Hospital Information System to Perform Process Mining.

PubMed

Neira, Ricardo Alfredo Quintano; de Vries, Gert-Jan; Caffarel, Jennifer; Stretton, Erin

2017-01-01

The aim of this work is to share our experience in relevant data extraction from a hospital information system in preparation for a research study using process mining techniques. The steps performed were: research definition, mapping the normative processes, identification of tables and fields names of the database, and extraction of data. We then offer lessons learned during data extraction phase. Any errors made in the extraction phase will propagate and have implications on subsequent analyses. Thus, it is essential to take the time needed and devote sufficient attention to detail to perform all activities with the goal of ensuring high quality of the extracted data. We hope this work will be informative for other researchers to plan and execute extraction of data for process mining research studies.

The National Map - Orthoimagery Layer

USGS Publications Warehouse

,

2007-01-01

Many Federal, State, and local agencies use a common set of framework geographic information databases as a tool for economic and community development, land and natural resource management, and health and safety services. Emergency management and homeland security applications rely on this information. Private industry, nongovernmental organizations, and individual citizens use the same geographic data. Geographic information underpins an increasingly large part of the Nation's economy. The U.S. Geological Survey (USGS) is developing The National Map to be a seamless, continually maintained, and nationally consistent set of online, public domain, framework geographic information databases. The National Map will serve as a foundation for integrating, sharing, and using data easily and consistently. The data will be the source of revised paper topographic maps. The National Map includes digital orthorectified imagery; elevation data; vector data for hydrography, transportation, boundary, and structure features; geographic names; and land cover information.

Map and database of Quaternary faults and folds in Colombia and its offshore regions

USGS Publications Warehouse

Paris, Gabriel; Machette, Michael N.; Dart, Richard L.; Haller, Kathleen M.

2000-01-01

As part of the International Lithosphere Program’s “World Map of Major Active Faults,” the U.S. Geological Survey (USGS) is assisting in the compilation of a series of digital maps of Quaternary faults and folds in Western Hemisphere countries. The maps show the locations, ages, and activity rates of major earthquake-related features such as faults and fault-related folds. They are accompanied by databases that describe these features and document current information on their activity in the Quaternary. Top date, the project has published fault and fold maps for Costa Rica (Montero and others, 1998), Panama (Cowan and others, 1998), Venezuela (Audemard and others, 2000), Bolovia/Chile (Lavenu, and others, 2000), and Argentina (Costa and others, 2000). The project is a key part of the Global Seismic Hazards Assessment Program (ILP Project II-0) for the International Decade for Natural Hazard Disaster Reduction.

Geologic map of Chickasaw National Recreation Area, Murray County, Oklahoma

USGS Publications Warehouse

Blome, Charles D.; Lidke, David J.; Wahl, Ronald R.; Golab, James A.

2013-01-01

This 1:24,000-scale geologic map is a compilation of previous geologic maps and new geologic mapping of areas in and around Chickasaw National Recreation Area. The geologic map includes revisions of numerous unit contacts and faults and a number of previously “undifferentiated” rock units were subdivided in some areas. Numerous circular-shaped hills in and around Chickasaw National Recreation Area are probably the result of karst-related collapse and may represent the erosional remnants of large, exhumed sinkholes. Geospatial registration of existing, smaller scale (1:72,000- and 1:100,000-scale) geologic maps of the area and construction of an accurate Geographic Information System (GIS) database preceded 2 years of fieldwork wherein previously mapped geology (unit contacts and faults) was verified and new geologic mapping was carried out. The geologic map of Chickasaw National Recreation Area and this pamphlet include information pertaining to how the geologic units and structural features in the map area relate to the formation of the northern Arbuckle Mountains and its Arbuckle-Simpson aquifer. The development of an accurate geospatial GIS database and the use of a handheld computer in the field greatly increased both the accuracy and efficiency in producing the 1:24,000-scale geologic map.

Operational aspects of remote sensing and gis for water resources conservation and management: few examples from Haryana state, India

NASA Astrophysics Data System (ADS)

Chaudhary, B. S.

Remote Sensing as the term signifies is the technique of gathering information about an object or surface phenomenon without being in physical contact with it and essentially by using electromagnetic radiation. The principle of remote sensing is based on the solar radiation reflected or emitted from the surface of the earth. As different objects behave differently for the incoming solar radiation and have different thermal properties, the amount of solar radiation reflected, absorbed or emitted is also different. GIS is defined as an information system that is used to input, store, retrieve, manipulate, analyze and output geographically referenced data or geospatial data in order to support decision making for planning and management of natural resources. It has four essential components - hardware, software, geospatial data and the users. GIS is needed because of some inherent demerits in the manual methods. The conventional methods of surveying and mapping are time consuming, labour intensive and tedious. The techniques of Remote Sensing (RS) and GIS are effective in timely and efficient generation of database of various resources. The synoptic view and multi resolution satellite data is helpful in generating information at various scales. The mapping and monitoring of dynamic phenomenon such as floods, water logging, deforestation can be done very effectively with the aid of RS and GIS. The effective planning for water resources conservation and management at district level can be made if the data is generated on 1:50,000 scale. Hydrogeomorphological maps on 1:50,000 scale showing different ground water prospect zones have been prepared for different districts in Haryana State, India. This information has been supplemented with the available inputs from existing sources about the depth to water level and ground water quality. The other maps prepared under National (Natural) Resources Information System (NRIS) such as land use/ land cover, geomorphology, drainage/ canal network and soils etc have also been consulted for preparing water resources action plan. The maps thus prepared depict different units for further ground water prospecting. It is to mention here that some of the Palaeo-channels have been picked up first time. Various sites has been suggested for site specific water resources conservation measures such check dams/ gully plugging, earthen dams etc for recharging the ground water. The information thus developed has been submitted to PWD (Public Health) Department, Govt. of Haryana as well as other district agencies involved in the planning and management of natural resources, for further implementation of the activities suggested in different areas. During visit to different areas, it was found that the water resources action plans suggested are being implemented in the field to its maximum possibility both in the direction of fresh ground water areas exploration as well as water resources conservation. The ground water in the areas suggested is being recharged and the people are taking good crops.

Linking NCBI to Wikipedia: a wiki-based approach.

PubMed

Page, Roderic D M

2011-03-31

The NCBI Taxonomy underpins many bioinformatics and phyloinformatics databases, but by itself provides limited information on the taxa it contains. One readily available source of information on many taxa is Wikipedia. This paper describes iPhylo Linkout, a Semantic wiki that maps taxa in NCBI's taxonomy database onto corresponding pages in Wikipedia. Storing the mapping in a wiki makes it easy to edit, correct, or otherwise annotate the links between NCBI and Wikipedia. The mapping currently comprises some 53,000 taxa, and is available at http://iphylo.org/linkout. The links between NCBI and Wikipedia are also made available to NCBI users through the NCBI LinkOut service.

Design and implementation of a CORBA-based genome mapping system prototype.

PubMed

Hu, J; Mungall, C; Nicholson, D; Archibald, A L

1998-01-01

CORBA (Common Object Request Broker Architecture), as an open standard, is considered to be a good solution for the development and deployment of applications in distributed heterogeneous environments. This technology can be applied in the bioinformatics area to enhance utilization, management and interoperation between biological resources. This paper investigates issues in developing CORBA applications for genome mapping information systems in the Internet environment with emphasis on database connectivity and graphical user interfaces. The design and implementation of a CORBA prototype for an animal genome mapping database are described. The prototype demonstration is available via: http://www.ri.bbsrc.ac.uk/ark_corba/. jian.hu@bbsrc.ac.uk

GIS applications for military operations in coastal zones

USGS Publications Warehouse

Fleming, S.; Jordan, T.; Madden, M.; Usery, E.L.; Welch, R.

2009-01-01

In order to successfully support current and future US military operations in coastal zones, geospatial information must be rapidly integrated and analyzed to meet ongoing force structure evolution and new mission directives. Coastal zones in a military-operational environment are complex regions that include sea, land and air features that demand high-volume databases of extreme detail within relatively narrow geographic corridors. Static products in the form of analog maps at varying scales traditionally have been used by military commanders and their operational planners. The rapidly changing battlefield of 21st Century warfare, however, demands dynamic mapping solutions. Commercial geographic information system (GIS) software for military-specific applications is now being developed and employed with digital databases to provide customized digital maps of variable scale, content and symbolization tailored to unique demands of military units. Research conducted by the Center for Remote Sensing and Mapping Science at the University of Georgia demonstrated the utility of GIS-based analysis and digital map creation when developing large-scale (1:10,000) products from littoral warfare databases. The methodology employed-selection of data sources (including high resolution commercial images and Lidar), establishment of analysis/modeling parameters, conduct of vehicle mobility analysis, development of models and generation of products (such as a continuous sea-land DEM and geo-visualization of changing shorelines with tidal levels)-is discussed. Based on observations and identified needs from the National Geospatial-Intelligence Agency, formerly the National Imagery and Mapping Agency, and the Department of Defense, prototype GIS models for military operations in sea, land and air environments were created from multiple data sets of a study area at US Marine Corps Base Camp Lejeune, North Carolina. Results of these models, along with methodologies for developing large-scale littoral warfare databases, aid the National Geospatial-Intelligence Agency in meeting littoral warfare analysis, modeling and map generation requirements for US military organizations. ?? 2008 International Society for Photogrammetry and Remote Sensing, Inc. (ISPRS).

GIS applications for military operations in coastal zones

NASA Astrophysics Data System (ADS)

Fleming, S.; Jordan, T.; Madden, M.; Usery, E. L.; Welch, R.

In order to successfully support current and future US military operations in coastal zones, geospatial information must be rapidly integrated and analyzed to meet ongoing force structure evolution and new mission directives. Coastal zones in a military-operational environment are complex regions that include sea, land and air features that demand high-volume databases of extreme detail within relatively narrow geographic corridors. Static products in the form of analog maps at varying scales traditionally have been used by military commanders and their operational planners. The rapidly changing battlefield of 21st Century warfare, however, demands dynamic mapping solutions. Commercial geographic information system (GIS) software for military-specific applications is now being developed and employed with digital databases to provide customized digital maps of variable scale, content and symbolization tailored to unique demands of military units. Research conducted by the Center for Remote Sensing and Mapping Science at the University of Georgia demonstrated the utility of GIS-based analysis and digital map creation when developing large-scale (1:10,000) products from littoral warfare databases. The methodology employed-selection of data sources (including high resolution commercial images and Lidar), establishment of analysis/modeling parameters, conduct of vehicle mobility analysis, development of models and generation of products (such as a continuous sea-land DEM and geo-visualization of changing shorelines with tidal levels)-is discussed. Based on observations and identified needs from the National Geospatial-Intelligence Agency, formerly the National Imagery and Mapping Agency, and the Department of Defense, prototype GIS models for military operations in sea, land and air environments were created from multiple data sets of a study area at US Marine Corps Base Camp Lejeune, North Carolina. Results of these models, along with methodologies for developing large-scale littoral warfare databases, aid the National Geospatial-Intelligence Agency in meeting littoral warfare analysis, modeling and map generation requirements for US military organizations.

Geology of the Palo Alto 30 x 60 minute quadrangle, California: A digital database

USGS Publications Warehouse

Brabb, Earl E.; Graymer, R.W.; Jones, David Lawrence

1998-01-01

This map database represents the integration of previously published and unpublished maps by several workers (see Sources of Data index map on Sheet 2 and the corresponding table below) and new geologic mapping and field checking by the authors with the previously published geologic map of San Mateo County (Brabb and Pampeyan, 1983) and Santa Cruz County (Brabb, 1989, Brabb and others, 1997), and various sources in a small part of Santa Clara County. These new data are released in digital form to provide an opportunity for regional planners, local, state, and federal agencies, teachers, consultants, and others interested in geologic data to have the new data long before a traditional paper map is published. The new data include a new depiction of Quaternary units in the San Francisco Bay plain emphasizing depositional environment, important new observations between the San Andreas and Pilarcitos faults, and a new interpretation of structural and stratigraphic relationships of rock packages (Assemblages).

A digital geologic map database for the state of Oklahoma

USGS Publications Warehouse

Heran, William D.; Green, Gregory N.; Stoeser, Douglas B.

2003-01-01

This dataset is a composite of part or all of the 12 1:250,000 scale quadrangles that make up Oklahoma. The result looks like a geologic map of the State of Oklahoma. But it is only an Oklahoma shaped map clipped from the 1:250,000 geologic maps. This is not a new geologic map. No new mapping took place. The geologic information from each quadrangle is available within the composite dataset.

From 20th century metabolic wall charts to 21st century systems biology: database of mammalian metabolic enzymes.

PubMed

Corcoran, Callan C; Grady, Cameron R; Pisitkun, Trairak; Parulekar, Jaya; Knepper, Mark A

2017-03-01

The organization of the mammalian genome into gene subsets corresponding to specific functional classes has provided key tools for systems biology research. Here, we have created a web-accessible resource called the Mammalian Metabolic Enzyme Database ( https://hpcwebapps.cit.nih.gov/ESBL/Database/MetabolicEnzymes/MetabolicEnzymeDatabase.html) keyed to the biochemical reactions represented on iconic metabolic pathway wall charts created in the previous century. Overall, we have mapped 1,647 genes to these pathways, representing ~7 percent of the protein-coding genome. To illustrate the use of the database, we apply it to the area of kidney physiology. In so doing, we have created an additional database ( Database of Metabolic Enzymes in Kidney Tubule Segments: https://hpcwebapps.cit.nih.gov/ESBL/Database/MetabolicEnzymes/), mapping mRNA abundance measurements (mined from RNA-Seq studies) for all metabolic enzymes to each of 14 renal tubule segments. We carry out bioinformatics analysis of the enzyme expression pattern among renal tubule segments and mine various data sources to identify vasopressin-regulated metabolic enzymes in the renal collecting duct. Copyright © 2017 the American Physiological Society.

Archetype relational mapping - a practical openEHR persistence solution.

PubMed

Wang, Li; Min, Lingtong; Wang, Rui; Lu, Xudong; Duan, Huilong

2015-11-05

One of the primary obstacles to the widespread adoption of openEHR methodology is the lack of practical persistence solutions for future-proof electronic health record (EHR) systems as described by the openEHR specifications. This paper presents an archetype relational mapping (ARM) persistence solution for the archetype-based EHR systems to support healthcare delivery in the clinical environment. First, the data requirements of the EHR systems are analysed and organized into archetype-friendly concepts. The Clinical Knowledge Manager (CKM) is queried for matching archetypes; when necessary, new archetypes are developed to reflect concepts that are not encompassed by existing archetypes. Next, a template is designed for each archetype to apply constraints related to the local EHR context. Finally, a set of rules is designed to map the archetypes to data tables and provide data persistence based on the relational database. A comparison study was conducted to investigate the differences among the conventional database of an EHR system from a tertiary Class A hospital in China, the generated ARM database, and the Node + Path database. Five data-retrieving tests were designed based on clinical workflow to retrieve exams and laboratory tests. Additionally, two patient-searching tests were designed to identify patients who satisfy certain criteria. The ARM database achieved better performance than the conventional database in three of the five data-retrieving tests, but was less efficient in the remaining two tests. The time difference of query executions conducted by the ARM database and the conventional database is less than 130 %. The ARM database was approximately 6-50 times more efficient than the conventional database in the patient-searching tests, while the Node + Path database requires far more time than the other two databases to execute both the data-retrieving and the patient-searching tests. The ARM approach is capable of generating relational databases using archetypes and templates for archetype-based EHR systems, thus successfully adapting to changes in data requirements. ARM performance is similar to that of conventionally-designed EHR systems, and can be applied in a practical clinical environment. System components such as ARM can greatly facilitate the adoption of openEHR architecture within EHR systems.

DBMap: a TreeMap-based framework for data navigation and visualization of brain research registry

NASA Astrophysics Data System (ADS)

Zhang, Ming; Zhang, Hong; Tjandra, Donny; Wong, Stephen T. C.

2003-05-01

The purpose of this study is to investigate and apply a new, intuitive and space-conscious visualization framework to facilitate efficient data presentation and exploration of large-scale data warehouses. We have implemented the DBMap framework for the UCSF Brain Research Registry. Such a novel utility would facilitate medical specialists and clinical researchers in better exploring and evaluating a number of attributes organized in the brain research registry. The current UCSF Brain Research Registry consists of a federation of disease-oriented database modules, including Epilepsy, Brain Tumor, Intracerebral Hemorrphage, and CJD (Creuzfeld-Jacob disease). These database modules organize large volumes of imaging and non-imaging data to support Web-based clinical research. While the data warehouse supports general information retrieval and analysis, there lacks an effective way to visualize and present the voluminous and complex data stored. This study investigates whether the TreeMap algorithm can be adapted to display and navigate categorical biomedical data warehouse or registry. TreeMap is a space constrained graphical representation of large hierarchical data sets, mapped to a matrix of rectangles, whose size and color represent interested database fields. It allows the display of a large amount of numerical and categorical information in limited real estate of computer screen with an intuitive user interface. The paper will describe, DBMap, the proposed new data visualization framework for large biomedical databases. Built upon XML, Java and JDBC technologies, the prototype system includes a set of software modules that reside in the application server tier and provide interface to backend database tier and front-end Web tier of the brain registry.

Seismic and tsunami hazard in Puerto Rico and the Virgin Islands

USGS Publications Warehouse

Dillon, William P.; Frankel, Arthur D.; Mueller, Charles S.; Rodriguez, Rafael W.; ten Brink, Uri S.

1999-01-01

Executive SummaryPuerto Rico and the Virgin Islands are located at an active plate boundary between the North American plate and the northeast corner of the Caribbean plate. The region was subject in historical times to large magnitude earthquakes and devastating tsunamis. A major downward tilt of the sea floor north of Puerto Rico and the Virgin Islands, large submarine rockslides, and an unusually large negative gravity anomaly are also indicative of a tectonically active region. Scientists have so far failed to explain the deformation of this region in a coherent and predictable picture, such as in California, and this has hampered their ability to assess seismic and tsunami hazards in the region. The NE corner of the Caribbean is unique among the seismically-active regions of the United States in that it is mostly covered by water. This fact presents an additional challenge for seismic and tsunami hazard assessment and mitigation.The workshop, convened in San Juan on March 23-24, 1999, was "historic" in that it brought together for the first time a broad spectrum of scientists, engineers, and public and private sector officials who deal with such diverse questions as tectonic models, probabilistic assessment of seismic hazard, prediction of tsunami runup, strong ground motion, building codes, stability of man-made structures, and the public’s preparedness for natural disasters. It was an opportunity for all the participants to find out how their own activity fit into the broad picture of science and how it aids society in hazard assessment and mitigation. In addition, the workshop was offered as a continuing education course at the Colegio de Ingenieros y Agrimensores de Puerto Rico, which assured a rapid dissemination of the results to the local community. A news conference which took place during the workshop alerted the public to the efforts of the USGS, other Federal agencies, the Commonwealth of Puerto Rico, universities and the private sector.During the first day of the workshop, participants from universities, federal institutions, and consulting firms in Puerto Rico, the Virgin Islands, the continental U.S., Dominican Republic, and Europe reviewed the present state of knowledge including a review and discussion of present plate models, recent GPS and seismic reflection data, seismicity, paleoseismology, and tsunamis. The state of earthquake/tsunami studies in Puerto Rico was presented by several faculty members from the University of Puerto Rico at Mayaguez. A preliminary seismic hazard map was presented by the USGS and previous hazard maps and economic loss assessments were considered. During the second day, the participants divided into working groups and prepared specific recommendations for future activities in the region along the six following topics below. Highlights of these recommended activities are:Marine geology and geophysics – Acquire deep-penetration seismic reflection and refraction data, deploy temporary ocean bottom seismometer arrays to record earthquakes, collect high-resolution multibeam bathymetry and side scan sonar data of the region, and in particular, the near shore region, and conduct focussed high-resolution seismic studies around faults. Determine slip rates of specific offshore faults. Assemble a GIS database for available marine geological and geophysical data.Paleoseismology and active faults - Field reconnaissance aimed at identifying Quaternary faults and determining their paleoseismic chronology and slip rates, as well as identifying and dating paleoliquefaction features from large earthquakes. Quaternary mapping of marine terraces, fluvial terraces and basins, beach ridges, etc., to establish framework for understanding neotectonic deformation of the island. Interpretation of aerial photography to identify possible Quaternary faults.Earthquake seismology – Determine an empirical seismic attenuation function using observations from local seismic networks and recently-installed broad-band stations. Evaluate existing earthquake catalogs from local networks and regional stations, complete the catalogs. Transcribe the pre-1991 network data from 9-track tape onto more stable archival media. Calibrate instruments of local networks. Use GPS measurement to constrain deformation rates used in seismic-hazard maps.Engineering – Prepare liquefaction susceptibility maps for the urban areas. Update and improve databases for types of site conditions. Collect site effect observations and near-surface geophysical measurements for future local (urban-area) hazard maps. Expand the number of instruments in the strong motion program. Develop fragility curves for Puerto Rico construction types and details, and carry out laboratory testing on selected types of mass-produced construction. Consider tsunami design in shoreline construction projects.Tsunami hazard - Extract tsunami observations from archives and develop a Caribbean historical tsunami database. Analyze prehistoric tsunami deposits. Collect accurate, up-to-date, near-shore topography and bathymetry for accurate inundation models. Prepare tsunami flooding and evacuation maps. Establish a Caribbean Tsunami Warning System for Puerto Rico and the Virgin Islands. Evaluate local, regional, national, and global seismic networks and equipment, and their role in a tsunami warning system.Societal concerns – Prepare warning messages, protocols, and evacuation routes for earthquake, tsunami, and landslide hazards for Puerto Rico and the U.S. Virgin Islands. Advocate enforcement of existing building codes. Prepare non-technical hazard assessment maps for political and educational uses. Raise the awareness of potentially affected populations by presentations at elementary schools, by the production of a tsunami video, and by distribution of earthquake preparedness manuals in newspaper supplements. Promote partnerships at state and federal level for long-term earthquake and tsunami hazard mitigation. This partnership should also include the private sector such as the insurance industry, telecommunication companies, and the engineering community.The following reports of the various working groups are the cumulative recommendations of the community of scientists, engineers, and public officials, who participated in the workshop. The list of participants and the workshop’s agenda are given in the appendix.Marine and Geology and Geophysics Working GroupPaleoseismology and Active Faults Working GroupJoint Working Group for Earthquake Seismology and EngineeringTsunami Working GroupSocietal Concerns Working Group

Chapter 4 - The LANDFIRE Prototype Project reference database

Treesearch

John F. Caratti

2006-01-01

This chapter describes the data compilation process for the Landscape Fire and Resource Management Planning Tools Prototype Project (LANDFIRE Prototype Project) reference database (LFRDB) and explains the reference data applications for LANDFIRE Prototype maps and models. The reference database formed the foundation for all LANDFIRE tasks. All products generated by the...

Transport Statistics - Transport - UNECE

Science.gov Websites

Statistics and Data Online Infocards Database SDG Papers E-Road Census Traffic Census Map Traffic Census 2015 available. Two new datasets have been added to the transport statistics database: bus and coach statistics Database Evaluations Follow UNECE Facebook Rss Twitter You tube Contact us Instagram Flickr Google+ Â

[Effects of soil data and map scale on assessment of total phosphorus storage in upland soils.

PubMed

Li, Heng Rong; Zhang, Li Ming; Li, Xiao di; Yu, Dong Sheng; Shi, Xue Zheng; Xing, Shi He; Chen, Han Yue

2016-06-01

Accurate assessment of total phosphorus storage in farmland soils is of great significance to sustainable agricultural and non-point source pollution control. However, previous studies haven't considered the estimation errors from mapping scales and various databases with different sources of soil profile data. In this study, a total of 393×10 4 hm 2 of upland in the 29 counties (or cities) of North Jiangsu was cited as a case for study. Analysis was performed of how the four sources of soil profile data, namely, "Soils of County", "Soils of Prefecture", "Soils of Province" and "Soils of China", and the six scales, i.e. 1:50000, 1:250000, 1:500000, 1:1000000, 1:4000000 and1:10000000, used in the 24 soil databases established for the four soil journals, affected assessment of soil total phosphorus. Compared with the most detailed 1:50000 soil database established with 983 upland soil profiles, relative deviation of the estimates of soil total phosphorus density (STPD) and soil total phosphorus storage (STPS) from the other soil databases varied from 4.8% to 48.9% and from 1.6% to 48.4%, respectively. The estimated STPD and STPS based on the 1:50000 database of "Soils of County" and most of the estimates based on the databases of each scale in "Soils of County" and "Soils of Prefecture" were different, with the significance levels of P＜0.001 or P＜0.05. Extremely significant differences (P＜0.001) existed between the estimates based on the 1:50000 database of "Soils of County" and the estimates based on the databases of each scale in "Soils of Province" and "Soils of China". This study demonstrated the significance of appropriate soil data sources and appropriate mapping scales in estimating STPS.

Pattern-based, multi-scale segmentation and regionalization of EOSD land cover

NASA Astrophysics Data System (ADS)

Niesterowicz, Jacek; Stepinski, Tomasz F.

2017-10-01

The Earth Observation for Sustainable Development of Forests (EOSD) map is a 25 m resolution thematic map of Canadian forests. Because of its large spatial extent and relatively high resolution the EOSD is difficult to analyze using standard GIS methods. In this paper we propose multi-scale segmentation and regionalization of EOSD as new methods for analyzing EOSD on large spatial scales. Segments, which we refer to as forest land units (FLUs), are delineated as tracts of forest characterized by cohesive patterns of EOSD categories; we delineated from 727 to 91,885 FLUs within the spatial extent of EOSD depending on the selected scale of a pattern. Pattern of EOSD's categories within each FLU is described by 1037 landscape metrics. A shapefile containing boundaries of all FLUs together with an attribute table listing landscape metrics make up an SQL-searchable spatial database providing detailed information on composition and pattern of land cover types in Canadian forest. Shapefile format and extensive attribute table pertaining to the entire legend of EOSD are designed to facilitate broad range of investigations in which assessment of composition and pattern of forest over large areas is needed. We calculated four such databases using different spatial scales of pattern. We illustrate the use of FLU database for producing forest regionalization maps of two Canadian provinces, Quebec and Ontario. Such maps capture the broad scale variability of forest at the spatial scale of the entire province. We also demonstrate how FLU database can be used to map variability of landscape metrics, and thus the character of landscape, over the entire Canada.

Preliminary maps of Quaternary deposits and liquefaction susceptibility, nine-county San Francisco Bay region, California: a digital database

USGS Publications Warehouse

Knudsen, Keith L.; Sowers, Janet M.; Witter, Robert C.; Wentworth, Carl M.; Helley, Edward J.; Nicholson, Robert S.; Wright, Heather M.; Brown, Katherine H.

2000-01-01

This report presents a preliminary map and database of Quaternary deposits and liquefaction susceptibility for the nine-county San Francisco Bay region, together with a digital compendium of ground effects associated with past earthquakes in the region. The report consists of (1) a spatial database of fivedata layers (Quaternary deposits, quadrangle index, and three ground effects layers) and two text layers (a labels and leaders layer for Quaternary deposits and for ground effects), (2) two small-scale colored maps (Quaternary deposits and liquefaction susceptibility), (3) a text describing the Quaternary map, liquefaction interpretation, and the ground effects compendium, and (4) the databse description pamphlet. The nine counties surrounding San Francisco Bay straddle the San Andreas fault system, which exposes the region to serious earthquake hazard (Working Group on California Earthquake Probabilities, 1999). Much of the land adjacent to the Bay and the major rivers and streams is underlain by unconsolidated deposits that are particularly vulnerable to earthquake shaking and liquefaction of water-saturated granular sediment. This new map provides a modern and regionally consistent treatment of Quaternary surficial deposits that builds on the pioneering mapping of Helley and Lajoie (Helley and others, 1979) and such intervening work as Atwater (1982), Helley and others (1994), and Helley and Graymer (1997a and b). Like these earlier studies, the current mapping uses geomorphic expression, pedogenic soils, and inferred depositional environments to define and distinguish the map units. In contrast to the twelve map units of Helley and Lajoie, however, this new map uses a complex stratigraphy of some forty units, which permits a more realistic portrayal of the Quaternary depositional system. The two colored maps provide a regional summary of the new mapping at a scale of 1:275,000, a scale that is sufficient to show the general distribution and relationships of the map units but cannot distinguish the more detailed elements that are present in the database. The report is the product of years of cooperative work by the USGS National Earthquake Hazards Reduction Program (NEHRP) and National Cooperative Geologic Mapping Program, William Lettis and & Associates, Inc. (WLA) and, more recently, by the California Division of Mines and Geology as well. An earlier version was submitted to the Geological Survey by WLA as a final report for a NEHRP grant (Knudsen and others, 2000). The mapping has been carried out by WLA geologists under contract to the NEHRP Earthquake Program (Grants #14-08-0001-G2129, 1434-94-G-2499, 1434-HQ-97-GR-03121, and 99-HQ-GR-0095) and with other limited support from the County of Napa, and recently also by the California Division of Mines and Geology. The current map consists of this new mapping and revisions of previous USGS mapping.

Real-time terrain storage generation from multiple sensors towards mobile robot operation interface.

PubMed

Song, Wei; Cho, Seoungjae; Xi, Yulong; Cho, Kyungeun; Um, Kyhyun

2014-01-01

A mobile robot mounted with multiple sensors is used to rapidly collect 3D point clouds and video images so as to allow accurate terrain modeling. In this study, we develop a real-time terrain storage generation and representation system including a nonground point database (PDB), ground mesh database (MDB), and texture database (TDB). A voxel-based flag map is proposed for incrementally registering large-scale point clouds in a terrain model in real time. We quantize the 3D point clouds into 3D grids of the flag map as a comparative table in order to remove the redundant points. We integrate the large-scale 3D point clouds into a nonground PDB and a node-based terrain mesh using the CPU. Subsequently, we program a graphics processing unit (GPU) to generate the TDB by mapping the triangles in the terrain mesh onto the captured video images. Finally, we produce a nonground voxel map and a ground textured mesh as a terrain reconstruction result. Our proposed methods were tested in an outdoor environment. Our results show that the proposed system was able to rapidly generate terrain storage and provide high resolution terrain representation for mobile mapping services and a graphical user interface between remote operators and mobile robots.

ReMap 2018: an updated atlas of regulatory regions from an integrative analysis of DNA-binding ChIP-seq experiments

PubMed Central

Chèneby, Jeanne; Gheorghe, Marius; Artufel, Marie

2018-01-01

Abstract With this latest release of ReMap (http://remap.cisreg.eu), we present a unique collection of regulatory regions in human, as a result of a large-scale integrative analysis of ChIP-seq experiments for hundreds of transcriptional regulators (TRs) such as transcription factors, transcriptional co-activators and chromatin regulators. In 2015, we introduced the ReMap database to capture the genome regulatory space by integrating public ChIP-seq datasets, covering 237 TRs across 13 million (M) peaks. In this release, we have extended this catalog to constitute a unique collection of regulatory regions. Specifically, we have collected, analyzed and retained after quality control a total of 2829 ChIP-seq datasets available from public sources, covering a total of 485 TRs with a catalog of 80M peaks. Additionally, the updated database includes new search features for TR names as well as aliases, including cell line names and the ability to navigate the data directly within genome browsers via public track hubs. Finally, full access to this catalog is available online together with a TR binding enrichment analysis tool. ReMap 2018 provides a significant update of the ReMap database, providing an in depth view of the complexity of the regulatory landscape in human. PMID:29126285

Real-Time Terrain Storage Generation from Multiple Sensors towards Mobile Robot Operation Interface

PubMed Central

Cho, Seoungjae; Xi, Yulong; Cho, Kyungeun

2014-01-01

A mobile robot mounted with multiple sensors is used to rapidly collect 3D point clouds and video images so as to allow accurate terrain modeling. In this study, we develop a real-time terrain storage generation and representation system including a nonground point database (PDB), ground mesh database (MDB), and texture database (TDB). A voxel-based flag map is proposed for incrementally registering large-scale point clouds in a terrain model in real time. We quantize the 3D point clouds into 3D grids of the flag map as a comparative table in order to remove the redundant points. We integrate the large-scale 3D point clouds into a nonground PDB and a node-based terrain mesh using the CPU. Subsequently, we program a graphics processing unit (GPU) to generate the TDB by mapping the triangles in the terrain mesh onto the captured video images. Finally, we produce a nonground voxel map and a ground textured mesh as a terrain reconstruction result. Our proposed methods were tested in an outdoor environment. Our results show that the proposed system was able to rapidly generate terrain storage and provide high resolution terrain representation for mobile mapping services and a graphical user interface between remote operators and mobile robots. PMID:25101321

Digital Mapping Techniques '07 - Workshop Proceedings

USGS Publications Warehouse

Soller, David R.

2008-01-01

The Digital Mapping Techniques '07 (DMT'07) workshop was attended by 85 technical experts from 49 agencies, universities, and private companies, including representatives from 27 state geological surveys. This year's meeting, the tenth in the annual series, was hosted by the South Carolina Geological Survey, from May 20-23, 2007, on the University of South Carolina campus in Columbia, South Carolina. Each DMT workshop has been coordinated by the U.S. Geological Survey's National Geologic Map Database Project and the Association of American State Geologists (AASG). As in previous year's meetings, the objective was to foster informal discussion and exchange of technical information, principally in order to develop more efficient methods for digital mapping, cartography, GIS analysis, and information management. At this meeting, oral and poster presentations and special discussion sessions emphasized: 1) methods for creating and publishing map products (here, 'publishing' includes Web-based release); 2) field data capture software and techniques, including the use of LIDAR; 3) digital cartographic techniques; 4) migration of digital maps into ArcGIS Geodatabase format; 5) analytical GIS techniques; and 6) continued development of the National Geologic Map Database.

Geographical Distribution of Woody Biomass Carbon in Tropical Africa: An Updated Database for 2000 (NDP-055.2007, NDP-055b))

DOE Data Explorer

Gibbs, Holly K. [Center for Sustainability and the Global Environment (SAGE), University of Wisconsin, Madison, WI (USA); Brown, Sandra [Winrock International, Arlington, VA (USA); Olsen, L. M. [Carbon Dioxide Information Analysis Center (CDIAC), Oak Ridge National Laboratory, Oak Ridge, TN (USA); Boden, Thomas A. [Carbon Dioxide Information Analysis Center (CDIAC), Oak Ridge National Laboratory, Oak Ridge, TN (USA)

2007-09-01

Maps of biomass density are critical inputs for estimating carbon emissions from deforestation and degradation of tropical forests. Brown and Gatson (1996) pioneered methods to use GIS analysis to map forest biomass based on forest inventory data (ndp055). This database is an update of ndp055 (which represent conditions in circa 1980) and accounts for land cover changes occurring up to the year 2000.

CMD: a Cotton Microsatellite Database resource for Gossypium genomics

PubMed Central

Blenda, Anna; Scheffler, Jodi; Scheffler, Brian; Palmer, Michael; Lacape, Jean-Marc; Yu, John Z; Jesudurai, Christopher; Jung, Sook; Muthukumar, Sriram; Yellambalase, Preetham; Ficklin, Stephen; Staton, Margaret; Eshelman, Robert; Ulloa, Mauricio; Saha, Sukumar; Burr, Ben; Liu, Shaolin; Zhang, Tianzhen; Fang, Deqiu; Pepper, Alan; Kumpatla, Siva; Jacobs, John; Tomkins, Jeff; Cantrell, Roy; Main, Dorrie

2006-01-01

Background The Cotton Microsatellite Database (CMD) is a curated and integrated web-based relational database providing centralized access to publicly available cotton microsatellites, an invaluable resource for basic and applied research in cotton breeding. Description At present CMD contains publication, sequence, primer, mapping and homology data for nine major cotton microsatellite projects, collectively representing 5,484 microsatellites. In addition, CMD displays data for three of the microsatellite projects that have been screened against a panel of core germplasm. The standardized panel consists of 12 diverse genotypes including genetic standards, mapping parents, BAC donors, subgenome representatives, unique breeding lines, exotic introgression sources, and contemporary Upland cottons with significant acreage. A suite of online microsatellite data mining tools are accessible at CMD. These include an SSR server which identifies microsatellites, primers, open reading frames, and GC-content of uploaded sequences; BLAST and FASTA servers providing sequence similarity searches against the existing cotton SSR sequences and primers, a CAP3 server to assemble EST sequences into longer transcripts prior to mining for SSRs, and CMap, a viewer for comparing cotton SSR maps. Conclusion The collection of publicly available cotton SSR markers in a centralized, readily accessible and curated web-enabled database provides a more efficient utilization of microsatellite resources and will help accelerate basic and applied research in molecular breeding and genetic mapping in Gossypium spp. PMID:16737546

Spatial Databases for CalVO Volcanoes: Current Status and Future Directions

NASA Astrophysics Data System (ADS)

Ramsey, D. W.

2013-12-01

The U.S. Geological Survey (USGS) California Volcano Observatory (CalVO) aims to advance scientific understanding of volcanic processes and to lessen harmful impacts of volcanic activity in California and Nevada. Within CalVO's area of responsibility, ten volcanoes or volcanic centers have been identified by a national volcanic threat assessment in support of developing the U.S. National Volcano Early Warning System (NVEWS) as posing moderate, high, or very high threats to surrounding communities based on their recent eruptive histories and their proximity to vulnerable people, property, and infrastructure. To better understand the extent of potential hazards at these and other volcanoes and volcanic centers, the USGS Volcano Science Center (VSC) is continually compiling spatial databases of volcano information, including: geologic mapping, hazards assessment maps, locations of geochemical and geochronological samples, and the distribution of volcanic vents. This digital mapping effort has been ongoing for over 15 years and early databases are being converted to match recent datasets compiled with new data models designed for use in: 1) generating hazard zones, 2) evaluating risk to population and infrastructure, 3) numerical hazard modeling, and 4) display and query on the CalVO as well as other VSC and USGS websites. In these capacities, spatial databases of CalVO volcanoes and their derivative map products provide an integrated and readily accessible framework of VSC hazards science to colleagues, emergency managers, and the general public.

Technical Report of: Assessing Teacher Preparation Program Effectiveness--A Pilot Examination of Value Added Approaches

ERIC Educational Resources Information Center

Noell, George H.

2005-01-01

Analyses were conducted replicating pilot work examining the feasibility of using the Louisiana's educational assessment data in concert with the Louisiana Educational Assessment Data System (LEADS) database and other associated databases to assess teacher preparation programs. The degree of matching across years and the degree of matching between…

Lithology and aggregate quality attributes for the digital geologic map of Colorado

USGS Publications Warehouse

Knepper, Daniel H.; Green, Gregory N.; Langer, William H.

1999-01-01

This geologic map was prepared as a part of a study of digital methods and techniques as applied to complex geologic maps. The geologic map was digitized from the original scribe sheets used to prepare the published Geologic Map of Colorado (Tweto 1979). Consequently the digital version is at 1:500,000 scale using the Lambert Conformal Conic map projection parameters of the state base map. Stable base contact prints of the scribe sheets were scanned on a Tektronix 4991 digital scanner. The scanner automatically converts the scanned image to an ASCII vector format. These vectors were transferred to a VAX minicomputer, where they were then loaded into ARC/INFO. Each vector and polygon was given attributes derived from the original 1979 geologic map.

Rice Annotation Project Database (RAP-DB): an integrative and interactive database for rice genomics.

PubMed

Sakai, Hiroaki; Lee, Sung Shin; Tanaka, Tsuyoshi; Numa, Hisataka; Kim, Jungsok; Kawahara, Yoshihiro; Wakimoto, Hironobu; Yang, Ching-chia; Iwamoto, Masao; Abe, Takashi; Yamada, Yuko; Muto, Akira; Inokuchi, Hachiro; Ikemura, Toshimichi; Matsumoto, Takashi; Sasaki, Takuji; Itoh, Takeshi

2013-02-01

The Rice Annotation Project Database (RAP-DB, http://rapdb.dna.affrc.go.jp/) has been providing a comprehensive set of gene annotations for the genome sequence of rice, Oryza sativa (japonica group) cv. Nipponbare. Since the first release in 2005, RAP-DB has been updated several times along with the genome assembly updates. Here, we present our newest RAP-DB based on the latest genome assembly, Os-Nipponbare-Reference-IRGSP-1.0 (IRGSP-1.0), which was released in 2011. We detected 37,869 loci by mapping transcript and protein sequences of 150 monocot species. To provide plant researchers with highly reliable and up to date rice gene annotations, we have been incorporating literature-based manually curated data, and 1,626 loci currently incorporate literature-based annotation data, including commonly used gene names or gene symbols. Transcriptional activities are shown at the nucleotide level by mapping RNA-Seq reads derived from 27 samples. We also mapped the Illumina reads of a Japanese leading japonica cultivar, Koshihikari, and a Chinese indica cultivar, Guangluai-4, to the genome and show alignments together with the single nucleotide polymorphisms (SNPs) and gene functional annotations through a newly developed browser, Short-Read Assembly Browser (S-RAB). We have developed two satellite databases, Plant Gene Family Database (PGFD) and Integrative Database of Cereal Gene Phylogeny (IDCGP), which display gene family and homologous gene relationships among diverse plant species. RAP-DB and the satellite databases offer simple and user-friendly web interfaces, enabling plant and genome researchers to access the data easily and facilitating a broad range of plant research topics.

Software Engineering Laboratory (SEL) database organization and user's guide, revision 2

NASA Technical Reports Server (NTRS)

Morusiewicz, Linda; Bristow, John

1992-01-01

The organization of the Software Engineering Laboratory (SEL) database is presented. Included are definitions and detailed descriptions of the database tables and views, the SEL data, and system support data. The mapping from the SEL and system support data to the base table is described. In addition, techniques for accessing the database through the Database Access Manager for the SEL (DAMSEL) system and via the ORACLE structured query language (SQL) are discussed.

Software Engineering Laboratory (SEL) database organization and user's guide

NASA Technical Reports Server (NTRS)

So, Maria; Heller, Gerard; Steinberg, Sandra; Spiegel, Douglas

1989-01-01

The organization of the Software Engineering Laboratory (SEL) database is presented. Included are definitions and detailed descriptions of the database tables and views, the SEL data, and system support data. The mapping from the SEL and system support data to the base tables is described. In addition, techniques for accessing the database, through the Database Access Manager for the SEL (DAMSEL) system and via the ORACLE structured query language (SQL), are discussed.

Geologic map of the Patagonia Mountains, Santa Cruz County, Arizona

USGS Publications Warehouse

Graybeal, Frederick T.; Moyer, Lorre A.; Vikre, Peter; Dunlap, Pamela; Wallis, John C.

2015-01-01

Several spatial databases provide data for the geologic map of the Patagonia Mountains in Arizona. The data can be viewed and queried in ArcGIS 10, a geographic information system; a geologic map is also available in PDF format. All products are available online only.

Staff - April M. Woolery | Alaska Division of Geological & Geophysical

Science.gov Websites

SurveysA> Skip to content State of Alaska myAlaska My Government Resident Business in Alaska Publications Search Statewide Maps New Releases Sales Interactive Maps Databases Sections Geologic Geologic Mapping Advisory Board STATEMAP Publications Geophysics Program Information Geophysical Survey

One map policy (OMP) implementation strategy to accelerate mapping of regional spatial planing (RTRW) in Indonesia

NASA Astrophysics Data System (ADS)

Hasyim, Fuad; Subagio, Habib; Darmawan, Mulyanto

2016-06-01

A preparation of spatial planning documents require basic geospatial information and thematic accuracies. Recently these issues become important because spatial planning maps are impartial attachment of the regional act draft on spatial planning (PERDA). The needs of geospatial information in the preparation of spatial planning maps preparation can be divided into two major groups: (i). basic geospatial information (IGD), consist of of Indonesia Topographic maps (RBI), coastal and marine environmental maps (LPI), and geodetic control network and (ii). Thematic Geospatial Information (IGT). Currently, mostly local goverment in Indonesia have not finished their regulation draft on spatial planning due to some constrain including technical aspect. Some constrain in mapping of spatial planning are as follows: the availability of large scale ofbasic geospatial information, the availability of mapping guidelines, and human resources. Ideal conditions to be achieved for spatial planning maps are: (i) the availability of updated geospatial information in accordance with the scale needed for spatial planning maps, (ii) the guideline of mapping for spatial planning to support local government in completion their PERDA, and (iii) capacity building of local goverment human resources to completed spatial planning maps. The OMP strategies formulated to achieve these conditions are: (i) accelerating of IGD at scale of 1:50,000, 1: 25,000 and 1: 5,000, (ii) to accelerate mapping and integration of Thematic Geospatial Information (IGT) through stocktaking availability and mapping guidelines, (iii) the development of mapping guidelines and dissemination of spatial utilization and (iv) training of human resource on mapping technology.

An approach to the analysis of SDSS spectroscopic outliers based on self-organizing maps. Designing the outlier analysis software package for the next Gaia survey

NASA Astrophysics Data System (ADS)

Fustes, D.; Manteiga, M.; Dafonte, C.; Arcay, B.; Ulla, A.; Smith, K.; Borrachero, R.; Sordo, R.

2013-11-01

Aims: A new method applied to the segmentation and further analysis of the outliers resulting from the classification of astronomical objects in large databases is discussed. The method is being used in the framework of the Gaia satellite Data Processing and Analysis Consortium (DPAC) activities to prepare automated software tools that will be used to derive basic astrophysical information that is to be included in final Gaia archive. Methods: Our algorithm has been tested by means of simulated Gaia spectrophotometry, which is based on SDSS observations and theoretical spectral libraries covering a wide sample of astronomical objects. Self-organizing maps networks are used to organize the information in clusters of objects, as homogeneously as possible according to their spectral energy distributions, and to project them onto a 2D grid where the data structure can be visualized. Results: We demonstrate the usefulness of the method by analyzing the spectra that were rejected by the SDSS spectroscopic classification pipeline and thus classified as "UNKNOWN". First, our method can help distinguish between astrophysical objects and instrumental artifacts. Additionally, the application of our algorithm to SDSS objects of unknown nature has allowed us to identify classes of objects with similar astrophysical natures. In addition, the method allows for the potential discovery of hundreds of new objects, such as white dwarfs and quasars. Therefore, the proposed method is shown to be very promising for data exploration and knowledge discovery in very large astronomical databases, such as the archive from the upcoming Gaia mission.

Application of Dempster-Shafer theory of evidence model to geoelectric and hydraulic parameters for groundwater potential zonation

NASA Astrophysics Data System (ADS)

Mogaji, Kehinde Anthony; Lim, Hwee San

2018-06-01

The application of a GIS - based Dempster - Shafer data driven model named as evidential belief function EBF- methodology to groundwater potential conditioning factors (GPCFs) derived from geophysical and hydrogeological data sets for assessing groundwater potentiality was presented in this study. The proposed method's efficacy in managing degree of uncertainty in spatial predictive models motivated this research. The method procedural approaches entail firstly, the database containing groundwater data records (bore wells location inventory, hydrogeological data record, etc.) and geophysical measurement data construction. From the database, different influencing groundwater occurrence factors, namely aquifer layer thickness, aquifer layer resistivity, overburden material resistivity, overburden material thickness, aquifer hydraulic conductivity and aquifer transmissivity were extracted and prepared. Further, the bore well location inventories were partitioned randomly into a ratio of 70% (19 wells) for model training and 30% (9 wells) for model testing. The synthesized of the GPCFs via applying the DS - EBF model algorithms produced the groundwater productivity potential index (GPPI) map which demarcated the area into low - medium, medium, medium - high and high potential zones. The analyzed percentage degree of uncertainty for the predicted lows potential zones classes and mediums/highs potential zones classes are >10% and <10%, respectively. The DS theory model-based GPPI map's validation through ROC approach established prediction rate accuracy of 88.8%. Successively, the determined transverse resistance (TR) values in the range of 1280 and 30,000 Ω my for the area geoelectrically delineated aquifer units of the predicted potential zones through Dar - Zarrouk Parameter analysis quantitatively confirm the DS theory modeling prediction results. This research results have expand the capability of DS - EBF model in predictive modeling by effective uncertainty management. Thus, the produced map could form part of decision support system reliable to be used by local authorities for groundwater exploitation and management in the area.

Monitoring the Mesoamerican Biological Corridor: A NASA/CCAD Cooperative Research Project

NASA Technical Reports Server (NTRS)

Sever, Thomas; Irwin, Daniel; Sader, Steven A.; Saatchi, Sassan

2004-01-01

To foster scientific cooperation under a Memorandum of Understanding between NASA and the Central American countries, the research project developed regional databases to monitor forest condition and environmental change throughout the region. Of particular interest is the Mesoamerican Biological Corridor (MBC), a chain of protected areas and proposed conservation areas that will link segments of natural habitats in Central America from the borders of northern Columbia to southern Mexico. The first and second year of the project focused on the development of regional satellite databases (JERS-IC, MODIS, and Landsat-TM), training of Central American cooperators and forest cover and change analysis. The three regional satellite mosaics were developed and distributed on CD-ROM to cooperators and regional outlets. Four regional remote sensing training courses were conducted in 3 countries including participants from all 7 Central American countries and Mexico. In year 3, regional forest change assessment in reference to Mesoamerican Biological Corridor was completed and land cover maps (from Landsat TM) were developed for 7 Landsat scenes and accuracy assessed. These maps are being used to support validation of MODIS forest/non forest maps and to examine forest fragmentation and forest cover change in selected study sites. A no-cost time extension (2003-2004) allowed the completion of an M.S. thesis by a Costa Rican student and preparation of manuscripts for future submission to peer-reviewed outlets. Proposals initiated at the end of the project have generated external funding from the U.S. Forest Service (to U. Maine), NASA-ESSF (Oregon State U.) and from USAID and EPA (to NASA-MSFC-GHCC) to test MODIS capabilities to detect forest change; conduct literature review on biomass estimation and carbon stocks and develop a regional remote sensing monitoring center in Central America. The success of the project has led to continued cooperation between NASA, other federal agencies, and scientists from all seven Central American Countries (see SERVIR web site for this ongoing work - servir.nsstc.nasa.gov).

LANDFIRE Remap: A New National Baseline Product Suite

NASA Astrophysics Data System (ADS)

Dockter, D.; Peterson, B.; Picotte, J. J.; Long, J.; Tolk, B.; Callahan, K.; Davidson, A.; Earnhardt, T.

2017-12-01

LANDFIRE, also known as the Landscape Fire and Resource Management Planning Tools Program, is a vegetation, fire, and fuel characteristic data creation program managed by both the U.S. Department of Agriculture Forest Service and the U.S. Department of the Interior with involvement from The Nature Conservancy. LANDFIRE represents the first and only complete, nationally consistent collection of over 20 geo-spatial layers (e.g., vegetation type and structure, fuels, fire regimes), databases, and ecological models that can be used across multiple disciplines to support cross-boundary planning, management, and operations across all lands of the United States and insular areas. Since 2004, LANDFIRE has produced comprehensive, consistent, and scientifically based suites of mapped products and associated databases for the United States and affiliated territories. These products depict the nation's major ecosystems and wildlife habitats. Over a decade has passed since the development of the first LANDFIRE base map, and an overhaul of the data products, i.e., a "Remap", is needed to maintain their functionality and relevance. To prepare for Remap production LANDFIRE has invested in a prototyping phase that focused on exploring various input data sources and new modeling and mapping techniques. While still grounded in a solid base consisting of Landsat imagery and high-quality field observations, the prototyping efforts explored different image compositing techniques, the integration of lidar data, modeling approaches as well as other factors that will inform Remap production. Several of these various research efforts are highlighted here and are currently being integrated into an end-to-end data processing flow that will drive the Remap production. The current Remap prototype effort has focused on several study areas throughout CONUS, with additional studies anticipated for Alaska, Hawaii and the territories. The LANDFIRE Remap effort is expected to take three to four years, with production commencing in northwestern CONUS.

Nursing diagnoses for the elderly using the International Classification for Nursing Practice and the activities of living model.

PubMed

de Medeiros, Ana Claudia Torres; da Nóbrega, Maria Miriam Lima; Rodrigues, Rosalina Aparecida Partezani; Fernandes, Maria das Graças Melo

2013-01-01

To develop nursing diagnosis statements for the elderly based on the Activities of Living Model and on the International Classification for Nursing Practice. Descriptive and exploratory study, put in practice in two stages: 1) collection of terms and concepts that are considered clinically and culturally relevant for nursing care delivered to the elderly, in order to develop a database of terms and 2) development of nursing diagnosis statements for the elderly in primary health care, based on the guidelines of the International Council of Nurses and on the database of terms for nursing practice involving the elderly. 414 terms were identified and submitted to the content validation process, with the participation of ten nursing experts, which resulted in 263 validated terms. These terms were submitted to cross mapping with the terms of the International Classification for Nursing Practice, resulting in the identification of 115 listed terms and 148 non-listed terms, which constituted the database of terms, from which 127 nursing diagnosis statements were prepared and classified into factors that affect the performance of the elderly's activities of living - 69 into biological factors, 19 into psychological, 31 into sociocultural, five into environmental, and three into political-economic factors. After clinical validation, these statements can serve as a guide for nursing consultations with elderly patients, without ignoring clinical experience, critical thinking and decision-making.

The Protein Disease Database of human body fluids: II. Computer methods and data issues.

PubMed

Lemkin, P F; Orr, G A; Goldstein, M P; Creed, G J; Myrick, J E; Merril, C R

1995-01-01

The Protein Disease Database (PDD) is a relational database of proteins and diseases. With this database it is possible to screen for quantitative protein abnormalities associated with disease states. These quantitative relationships use data drawn from the peer-reviewed biomedical literature. Assays may also include those observed in high-resolution electrophoretic gels that offer the potential to quantitate many proteins in a single test as well as data gathered by enzymatic or immunologic assays. We are using the Internet World Wide Web (WWW) and the Web browser paradigm as an access method for wide distribution and querying of the Protein Disease Database. The WWW hypertext transfer protocol and its Common Gateway Interface make it possible to build powerful graphical user interfaces that can support easy-to-use data retrieval using query specification forms or images. The details of these interactions are totally transparent to the users of these forms. Using a client-server SQL relational database, user query access, initial data entry and database maintenance are all performed over the Internet with a Web browser. We discuss the underlying design issues, mapping mechanisms and assumptions that we used in constructing the system, data entry, access to the database server, security, and synthesis of derived two-dimensional gel image maps and hypertext documents resulting from SQL database searches.

Levelling and merging of two discrete national-scale geochemical databases: A case study showing the surficial expression of metalliferous black shales

USGS Publications Warehouse

Smith, Steven M.; Neilson, Ryan T.; Giles, Stuart A.

2015-01-01

Government-sponsored, national-scale, soil and sediment geochemical databases are used to estimate regional and local background concentrations for environmental issues, identify possible anthropogenic contamination, estimate mineral endowment, explore for new mineral deposits, evaluate nutrient levels for agriculture, and establish concentration relationships with human or animal health. Because of these different uses, it is difficult for any single database to accommodate all the needs of each client. Smith et al. (2013, p. 168) reviewed six national-scale soil and sediment geochemical databases for the United States (U.S.) and, for each, evaluated “its appropriateness as a national-scale geochemical database and its usefulness for national-scale geochemical mapping.” Each of the evaluated databases has strengths and weaknesses that were listed in that review.Two of these U.S. national-scale geochemical databases are similar in their sample media and collection protocols but have different strengths—primarily sampling density and analytical consistency. This project was implemented to determine whether those databases could be merged to produce a combined dataset that could be used for mineral resource assessments. The utility of the merged database was tested to see whether mapped distributions could identify metalliferous black shales at a national scale.

Engineering With Nature Geographic Project Mapping Tool (EWN ProMap)

DTIC Science & Technology

2015-07-01

EWN ProMap database provides numerous case studies for infrastructure projects such as breakwaters, river engineering dikes, and seawalls that have...the EWN Project Mapping Tool (EWN ProMap) is to assist users in their search for case study information that can be valuable for developing EWN ideas...Essential elements of EWN include: (1) using science and engineering to produce operational efficiencies supporting sustainable delivery of

Using a spatial and tabular database to generate statistics from terrain and spectral data for soil surveys

USGS Publications Warehouse

Horvath , E.A.; Fosnight, E.A.; Klingebiel, A.A.; Moore, D.G.; Stone, J.E.; Reybold, W.U.; Petersen, G.W.

1987-01-01

A methodology has been developed to create a spatial database by referencing digital elevation, Landsat multispectral scanner data, and digitized soil premap delineations of a number of adjacent 7.5-min quadrangle areas to a 30-m Universal Transverse Mercator projection. Slope and aspect transformations are calculated from elevation data and grouped according to field office specifications. An unsupervised classification is performed on a brightness and greenness transformation of the spectral data. The resulting spectral, slope, and aspect maps of each of the 7.5-min quadrangle areas are then plotted and submitted to the field office to be incorporated into the soil premapping stages of a soil survey. A tabular database is created from spatial data by generating descriptive statistics for each data layer within each soil premap delineation. The tabular data base is then entered into a data base management system to be accessed by the field office personnel during the soil survey and to be used for subsequent resource management decisions.Large amounts of data are collected and archived during resource inventories for public land management. Often these data are stored as stacks of maps or folders in a file system in someone's office, with the maps in a variety of formats, scales, and with various standards of accuracy depending on their purpose. This system of information storage and retrieval is cumbersome at best when several categories of information are needed simultaneously for analysis or as input to resource management models. Computers now provide the resource scientist with the opportunity to design increasingly complex models that require even more categories of resource-related information, thus compounding the problem.Recently there has been much emphasis on the use of geographic information systems (GIS) as an alternative method for map data archives and as a resource management tool. Considerable effort has been devoted to the generation of tabular databases, such as the U.S. Department of Agriculture's SCS/S015 (Soil Survey Staff, 1983), to archive the large amounts of information that are collected in conjunction with mapping of natural resources in an easily retrievable manner.During the past 4 years the U.S. Geological Survey's EROS Data Center, in a cooperative effort with the Bureau of Land Management (BLM) and the Soil Conservation Service (SCS), developed a procedure that uses spatial and tabular databases to generate elevation, slope, aspect, and spectral map products that can be used during soil premapping. The procedure results in tabular data, residing in a database management system, that are indexed to the final soil delineations and help quantify soil map unit composition.The procedure was developed and tested on soil surveys on over 600 000 ha in Wyoming, Nevada, and Idaho. A transfer of technology from the EROS Data Center to the BLM will enable the Denver BLM Service Center to use this procedure in soil survey operations on BLM lands. Also underway is a cooperative effort between the EROS Data Center and SCS to define and evaluate maps that can be produced as derivatives of digital elevation data for 7.5-min quadrangle areas, such as those used during the premapping stage of the soil surveys mentioned above, the idea being to make such products routinely available.The procedure emphasizes the applications of digital elevation and spectral data to order-three soil surveys on rangelands, and will:Incorporate digital terrain and spectral data into a spatial database for soil surveys.Provide hardcopy products (that can be generated from digital elevation model and spectral data) that are useful during the soil pre-mapping process.Incorporate soil premaps into a spatial database that can be accessed during the soil survey process along with terrain and spectral data.Summarize useful quantitative information for soil mapping and for making interpretations for resource management.

Publications - AR 2015 | Alaska Division of Geological & Geophysical

Science.gov Websites

Publications Search Statewide Maps New Releases Sales Interactive Maps Databases Sections Geologic publication sales page for more information. Quadrangle(s): Alaska General Bibliographic Reference DGGS Staff

Publications - GMC 280 | Alaska Division of Geological & Geophysical

Science.gov Websites

Publications Search Statewide Maps New Releases Sales Interactive Maps Databases Sections Geologic please see our publication sales page for more information. Bibliographic Reference Piggott, Neil, and

Analysis of national and regional landslide inventories in Europe

NASA Astrophysics Data System (ADS)

Hervás, J.; Van Den Eeckhaut, M.

2012-04-01

A landslide inventory can be defined as a detailed register of the distribution and characteristics of past landslides in an area. Today most landslide inventories have the form of digital databases including landslide distribution maps and associated alphanumeric information for each landslide. While landslide inventories are of the utmost importance for land use planning and risk management through the generation of landslide zonation (susceptibility, hazard and risk) maps, landslide databases are thought to greatly differ from one country to another and often also within the same country. This hampers the generation of comparable, harmonised landslide zonation maps at national and continental scales, which is needed for policy and decision making at EU level as regarded for instance in the INSPIRE Directive and the Thematic Strategy for Soil Protection. In order to have a clear understanding of the landslide inventories available in Europe and their potential to produce landslide zonation maps as well as to draw recommendations to improve harmonisation and interoperability between landslide databases, we have surveyed 37 countries. In total, information has been collected and analysed for 24 national databases in 22 countries (Albania, Andorra, Austria, Bosnia and Herzegovina, Bulgaria, Czech Republic, Former Yugoslav Republic of Macedonia, France, Greece, Hungary, Iceland, Ireland, Italy, Norway, Poland, Portugal, Slovakia, Slovenia, Spain, Sweden, Switzerland and UK) and 22 regional databases in 10 countries. At the moment, over 633,000 landslides are recorded in national databases, representing on average less than 50% of the estimated landslides occurred in these countries. The sample of regional databases included over 103,000 landslides, with an estimated completeness substantially higher than that of national databases, as more attention can be paid for data collection over smaller regions. Yet, both for national and regional coverage, the data collection methods only occasionally included advanced technologies such as remote sensing. With regard to the inventory maps of most databases, the analysis illustrates the high variability of scales (between 1:10 000 and 1:1 M for national inventories, and from 1:10 000 to 1:25 000 for regional inventories), landslide classification systems and representation symbology. It also shows the difficulties to precisely locate landslides referred to in historical documents only. In addition, information on landslide magnitude, geometrical characteristics and age reported in national and regional databases greatly differs, even within the same database, as it strongly depends on the objectives of the database, the data collection methods used, the resources employed and the remaining landslide expression. In particular, landslide initiation and/or reactivation dates are generally estimated in less than 25% of records, thus making hazard and hence risk assessment difficult. In most databases, scarce information on landslide impact (damage and casualties) further hinders risk assessment at regional and national scales. Estimated landslide activity, which is very relevant to early warning and emergency management, is only included in half of the national databases and restricted to part of the landslides registered. Moreover, the availability of this information is not substantially higher in regional databases than in national ones. Most landslide databases further included information on geo-environmental characteristics at the landslide site, which is very important for modelling landslide zoning. Although a number of national and regional agencies provide free web-GIS visualisation services, the potential of existing landslide databases is often not fully exploited as, in many cases, access by the general public and external researchers is restricted. Additionally, the availability of information only in the national or local language is common to most national and regional databases, thus hampering consultation for most foreigners. Finally, some suggestions for a minimum set of attributes to be collected and made available by European countries for building up a continental landslide database in support of EU policies are presented. This study has been conducted in the framework of the EU-FP7 project SafeLand (Grant Agreement 22647).

Extending GIS Technology to Study Karst Features of Southeastern Minnesota

NASA Astrophysics Data System (ADS)

Gao, Y.; Tipping, R. G.; Alexander, E. C.; Alexander, S. C.

2001-12-01

This paper summarizes ongoing research on karst feature distribution of southeastern Minnesota. The main goals of this interdisciplinary research are: 1) to look for large-scale patterns in the rate and distribution of sinkhole development; 2) to conduct statistical tests of hypotheses about the formation of sinkholes; 3) to create management tools for land-use managers and planners; and 4) to deliver geomorphic and hydrogeologic criteria for making scientifically valid land-use policies and ethical decisions in karst areas of southeastern Minnesota. Existing county and sub-county karst feature datasets of southeastern Minnesota have been assembled into a large GIS-based database capable of analyzing the entire data set. The central database management system (DBMS) is a relational GIS-based system interacting with three modules: GIS, statistical and hydrogeologic modules. ArcInfo and ArcView were used to generate a series of 2D and 3D maps depicting karst feature distributions in southeastern Minnesota. IRIS ExplorerTM was used to produce satisfying 3D maps and animations using data exported from GIS-based database. Nearest-neighbor analysis has been used to test sinkhole distributions in different topographic and geologic settings. All current nearest-neighbor analyses testify that sinkholes in southeastern Minnesota are not evenly distributed in this area (i.e., they tend to be clustered). More detailed statistical methods such as cluster analysis, histograms, probability estimation, correlation and regression have been used to study the spatial distributions of some mapped karst features of southeastern Minnesota. A sinkhole probability map for Goodhue County has been constructed based on sinkhole distribution, bedrock geology, depth to bedrock, GIS buffer analysis and nearest-neighbor analysis. A series of karst features for Winona County including sinkholes, springs, seeps, stream sinks and outcrop has been mapped and entered into the Karst Feature Database of Southeastern Minnesota. The Karst Feature Database of Winona County is being expanded to include all the mapped karst features of southeastern Minnesota. Air photos from 1930s to 1990s of Spring Valley Cavern Area in Fillmore County were scanned and geo-referenced into our GIS system. This technology has been proved to be very useful to identify sinkholes and study the rate of sinkhole development.

Mapping small molecule binding data to structural domains

PubMed Central

2012-01-01

Background Large-scale bioactivity/SAR Open Data has recently become available, and this has allowed new analyses and approaches to be developed to help address the productivity and translational gaps of current drug discovery. One of the current limitations of these data is the relative sparsity of reported interactions per protein target, and complexities in establishing clear relationships between bioactivity and targets using bioinformatics tools. We detail in this paper the indexing of targets by the structural domains that bind (or are likely to bind) the ligand within a full-length protein. Specifically, we present a simple heuristic to map small molecule binding to Pfam domains. This profiling can be applied to all proteins within a genome to give some indications of the potential pharmacological modulation and regulation of all proteins. Results In this implementation of our heuristic, ligand binding to protein targets from the ChEMBL database was mapped to structural domains as defined by profiles contained within the Pfam-A database. Our mapping suggests that the majority of assay targets within the current version of the ChEMBL database bind ligands through a small number of highly prevalent domains, and conversely the majority of Pfam domains sampled by our data play no currently established role in ligand binding. Validation studies, carried out firstly against Uniprot entries with expert binding-site annotation and secondly against entries in the wwPDB repository of crystallographic protein structures, demonstrate that our simple heuristic maps ligand binding to the correct domain in about 90 percent of all assessed cases. Using the mappings obtained with our heuristic, we have assembled ligand sets associated with each Pfam domain. Conclusions Small molecule binding has been mapped to Pfam-A domains of protein targets in the ChEMBL bioactivity database. The result of this mapping is an enriched annotation of small molecule bioactivity data and a grouping of activity classes following the Pfam-A specifications of protein domains. This is valuable for data-focused approaches in drug discovery, for example when extrapolating potential targets of a small molecule with known activity against one or few targets, or in the assessment of a potential target for drug discovery or screening studies. PMID:23282026

Where can cone penetrometer technology be applied? Development of a map of Europe regarding the soil penetrability.

PubMed

Fleischer, Matthias; van Ree, Derk; Leven, Carsten

2014-01-01

Over the past decades, significant efforts have been invested in the development of push-in technology for site characterization and monitoring for geotechnical and environmental purposes and have especially been undertaken in the Netherlands and Germany. These technologies provide the opportunity for faster, cheaper, and collection of more reliable subsurface data. However, to maximize the technology both from a development and implementation point of view, it is necessary to have an overview of the areas suitable for the application of this type of technology. Such an overview is missing and cannot simply be read from existing maps and material. This paper describes the development of a map showing the feasibility or applicability of Direct Push/Cone Penetrometer Technology (DPT/CPT) in Europe which depends on the subsurface and its extremely varying properties throughout Europe. Subsurface penetrability is dependent on a range of factors that have not been mapped directly or can easily be inferred from existing databases, especially the maximum depth reachable would be of interest. Among others, it mainly depends on the geology, the soil mechanical properties, the type of equipment used as well as soil-forming processes. This study starts by looking at different geological databases available at the European scale. Next, a scheme has been developed linking geological properties mapped to geotechnical properties to determine basic penetrability categories. From this, a map of soil penetrability is developed and presented. Validating the output by performing field tests was beyond the scope of this study, but for the country of the Netherlands, this map has been compared against a database containing actual cone penetrometer depth data to look for possible contradictory results that would negate the approach. The map for the largest part of Europe clearly shows that there is a much wider potential for the application of Direct Push Technology than is currently seen. The study also shows that there is a lack of large-scale databases that contain depth-resolved data as well as soil mechanical and physical properties that can be used for engineering purposes in relation to the subsurface.

Some thoughts on cartographic and geographic information systems for the 1980's

USGS Publications Warehouse

Starr, L.E.; Anderson, Kirk E.

1981-01-01

The U.S. Geological Survey is adopting computer techniques to meet the expanding need for cartographic base category data. Digital methods are becoming increasingly important in the mapmaking process, and the demand is growing for physical, social, and economic data. Recognizing these emerging needs, the National Mapping Division began, several years ago, an active program to develop advanced digital methods to support cartographic and geographic data processing. An integrated digital cartographic database would meet the anticipated needs. Such a database would contain data from various sources, and could provide a variety of standard and customized map and digital data file products. This cartographic database soon will be technologically feasible. The present trends in the economics of cartographic and geographic data handling and the growing needs for integrated physical, social, and economic data make such a database virtually mandatory.

BioBarcode: a general DNA barcoding database and server platform for Asian biodiversity resources.

PubMed

Lim, Jeongheui; Kim, Sang-Yoon; Kim, Sungmin; Eo, Hae-Seok; Kim, Chang-Bae; Paek, Woon Kee; Kim, Won; Bhak, Jong

2009-12-03

DNA barcoding provides a rapid, accurate, and standardized method for species-level identification using short DNA sequences. Such a standardized identification method is useful for mapping all the species on Earth, particularly when DNA sequencing technology is cheaply available. There are many nations in Asia with many biodiversity resources that need to be mapped and registered in databases. We have built a general DNA barcode data processing system, BioBarcode, with open source software - which is a general purpose database and server. It uses mySQL RDBMS 5.0, BLAST2, and Apache httpd server. An exemplary database of BioBarcode has around 11,300 specimen entries (including GenBank data) and registers the biological species to map their genetic relationships. The BioBarcode database contains a chromatogram viewer which improves the performance in DNA sequence analyses. Asia has a very high degree of biodiversity and the BioBarcode database server system aims to provide an efficient bioinformatics protocol that can be freely used by Asian researchers and research organizations interested in DNA barcoding. The BioBarcode promotes the rapid acquisition of biological species DNA sequence data that meet global standards by providing specialized services, and provides useful tools that will make barcoding cheaper and faster in the biodiversity community such as standardization, depository, management, and analysis of DNA barcode data. The system can be downloaded upon request, and an exemplary server has been constructed with which to build an Asian biodiversity system http://www.asianbarcode.org.

Effective Use of Java Data Objects in Developing Database Applications; Advantages and Disadvantages

DTIC Science & Technology

2004-06-01

DATA OBJECTS IN DEVELOPING DATABASE APPLICATIONS. ADVANTAGES AND DISADVANTAGES Paschalis Zilidis June 2004 Thesis Advisor: Thomas...Objects in Developing Database Applications. Advantages and Disadvantages 6. AUTHOR(S) Paschalis ZILIDIS 5. FUNDING NUMBERS 7. PERFORMING...database for the backend datastore. The major disadvantage of this approach is the well-known “impedance mismatch” in which some form of mapping is

GIS Database and Google Map of the Population at Risk of Cholangiocarcinoma in Mueang Yang District, Nakhon Ratchasima Province of Thailand.

PubMed

Kaewpitoon, Soraya J; Rujirakul, Ratana; Joosiri, Apinya; Jantakate, Sirinun; Sangkudloa, Amnat; Kaewthani, Sarochinee; Chimplee, Kanokporn; Khemplila, Kritsakorn; Kaewpitoon, Natthawut

2016-01-01

Cholangiocarcinoma (CCA) is a serious problem in Thailand, particularly in the northeastern and northern regions. Database of population at risk are need required for monitoring, surveillance, home health care, and home visit. Therefore, this study aimed to develop a geographic information system (GIS) database and Google map of the population at risk of CCA in Mueang Yang district, Nakhon Ratchasima province, northeastern Thailand during June to October 2015. Populations at risk were screened using the Korat CCA verbal screening test (KCVST). Software included Microsoft Excel, ArcGIS, and Google Maps. The secondary data included the point of villages, sub-district boundaries, district boundaries, point of hospital in Mueang Yang district, used for created the spatial databese. The populations at risk for CCA and opisthorchiasis were used to create an arttribute database. Data were tranfered to WGS84 UTM ZONE 48. After the conversion, all of the data were imported into Google Earth using online web pages www.earthpoint.us. Some 222 from a 4,800 population at risk for CCA constituted a high risk group. Geo-visual display available at following www.google.com/maps/d/u/0/ edit?mid=zPxtcHv_iDLo.kvPpxl5mAs90 and hl=th. Geo-visual display 5 layers including: layer 1, village location and number of the population at risk for CCA; layer 2, sub-district health promotion hospital in Mueang Yang district and number of opisthorchiasis; layer 3, sub-district district and the number of population at risk for CCA; layer 4, district hospital and the number of population at risk for CCA and number of opisthorchiasis; and layer 5, district and the number of population at risk for CCA and number of opisthorchiasis. This GIS database and Google map production process is suitable for further monitoring, surveillance, and home health care for CCA sufferers.

ReMatch: a web-based tool to construct, store and share stoichiometric metabolic models with carbon maps for metabolic flux analysis.

PubMed

Pitkänen, Esa; Akerlund, Arto; Rantanen, Ari; Jouhten, Paula; Ukkonen, Esko

2008-08-25

ReMatch is a web-based, user-friendly tool that constructs stoichiometric network models for metabolic flux analysis, integrating user-developed models into a database collected from several comprehensive metabolic data resources, including KEGG, MetaCyc and CheBI. Particularly, ReMatch augments the metabolic reactions of the model with carbon mappings to facilitate (13)C metabolic flux analysis. The construction of a network model consisting of biochemical reactions is the first step in most metabolic modelling tasks. This model construction can be a tedious task as the required information is usually scattered to many separate databases whose interoperability is suboptimal, due to the heterogeneous naming conventions of metabolites in different databases. Another, particularly severe data integration problem is faced in (13)C metabolic flux analysis, where the mappings of carbon atoms from substrates into products in the model are required. ReMatch has been developed to solve the above data integration problems. First, ReMatch matches the imported user-developed model against the internal ReMatch database while considering a comprehensive metabolite name thesaurus. This, together with wild card support, allows the user to specify the model quickly without having to look the names up manually. Second, ReMatch is able to augment reactions of the model with carbon mappings, obtained either from the internal database or given by the user with an easy-touse tool. The constructed models can be exported into 13C-FLUX and SBML file formats. Further, a stoichiometric matrix and visualizations of the network model can be generated. The constructed models of metabolic networks can be optionally made available to the other users of ReMatch. Thus, ReMatch provides a common repository for metabolic network models with carbon mappings for the needs of metabolic flux analysis community. ReMatch is freely available for academic use at http://www.cs.helsinki.fi/group/sysfys/software/rematch/.

An offline-online Web-GIS Android application for fast data acquisition of landslide hazard and risk

NASA Astrophysics Data System (ADS)

Olyazadeh, Roya; Sudmeier-Rieux, Karen; Jaboyedoff, Michel; Derron, Marc-Henri; Devkota, Sanjaya

2017-04-01

Regional landslide assessments and mapping have been effectively pursued by research institutions, national and local governments, non-governmental organizations (NGOs), and different stakeholders for some time, and a wide range of methodologies and technologies have consequently been proposed. Land-use mapping and hazard event inventories are mostly created by remote-sensing data, subject to difficulties, such as accessibility and terrain, which need to be overcome. Likewise, landslide data acquisition for the field navigation can magnify the accuracy of databases and analysis. Open-source Web and mobile GIS tools can be used for improved ground-truthing of critical areas to improve the analysis of hazard patterns and triggering factors. This paper reviews the implementation and selected results of a secure mobile-map application called ROOMA (Rapid Offline-Online Mapping Application) for the rapid data collection of landslide hazard and risk. This prototype assists the quick creation of landslide inventory maps (LIMs) by collecting information on the type, feature, volume, date, and patterns of landslides using open-source Web-GIS technologies such as Leaflet maps, Cordova, GeoServer, PostgreSQL as the real DBMS (database management system), and PostGIS as its plug-in for spatial database management. This application comprises Leaflet maps coupled with satellite images as a base layer, drawing tools, geolocation (using GPS and the Internet), photo mapping, and event clustering. All the features and information are recorded into a GeoJSON text file in an offline version (Android) and subsequently uploaded to the online mode (using all browsers) with the availability of Internet. Finally, the events can be accessed and edited after approval by an administrator and then be visualized by the general public.

Ensemble of ground subsidence hazard maps using fuzzy logic

NASA Astrophysics Data System (ADS)

Park, Inhye; Lee, Jiyeong; Saro, Lee

2014-06-01

Hazard maps of ground subsidence around abandoned underground coal mines (AUCMs) in Samcheok, Korea, were constructed using fuzzy ensemble techniques and a geographical information system (GIS). To evaluate the factors related to ground subsidence, a spatial database was constructed from topographic, geologic, mine tunnel, land use, groundwater, and ground subsidence maps. Spatial data, topography, geology, and various ground-engineering data for the subsidence area were collected and compiled in a database for mapping ground-subsidence hazard (GSH). The subsidence area was randomly split 70/30 for training and validation of the models. The relationships between the detected ground-subsidence area and the factors were identified and quantified by frequency ratio (FR), logistic regression (LR) and artificial neural network (ANN) models. The relationships were used as factor ratings in the overlay analysis to create ground-subsidence hazard indexes and maps. The three GSH maps were then used as new input factors and integrated using fuzzy-ensemble methods to make better hazard maps. All of the hazard maps were validated by comparison with known subsidence areas that were not used directly in the analysis. As the result, the ensemble model was found to be more effective in terms of prediction accuracy than the individual model.

Next Generation Clustered Heat Maps | Informatics Technology for Cancer Research (ITCR)

Cancer.gov

Next-Generation (Clustered) Heat Maps are interactive heat maps that enable the user to zoom and pan across the heatmap, alter its color scheme, generate production quality PDFs, and link out from rows, columns, and individual heatmap entries to related statistics, databases and other information.

Geologic map of the Sauvie Island quadrangle, Multnomah and Columbia Counties, Oregon, and Clark County, Washington

USGS Publications Warehouse

Evarts, Russell C.; O'Connor, Jim; Cannon, Charles M.

2016-03-02

This map contributes to a U.S. Geological Survey program to improve the geologic database for the Portland region of the Pacific Northwest urban corridor. The map and ancillary data will support assessments of seismic risk, ground-failure hazards, and resource availability.

Publications - AR 2008 | Alaska Division of Geological & Geophysical

Science.gov Websites

Publications Search Statewide Maps New Releases Sales Interactive Maps Databases Sections Geologic ; Geophysical Surveys Ordering Info: Download below or please see our publication sales page for more

Publications - AR 2007 | Alaska Division of Geological & Geophysical

Science.gov Websites

Publications Search Statewide Maps New Releases Sales Interactive Maps Databases Sections Geologic ; Geophysical Surveys Ordering Info: Download below or please see our publication sales page for more

Publications - AR 2001 | Alaska Division of Geological & Geophysical

Science.gov Websites

Publications Search Statewide Maps New Releases Sales Interactive Maps Databases Sections Geologic ; Geophysical Surveys Ordering Info: Download below or please see our publication sales page for more

Publications - GMC 379 | Alaska Division of Geological & Geophysical

Science.gov Websites

Publications Search Statewide Maps New Releases Sales Interactive Maps Databases Sections Geologic Info: Download below or please see our publication sales page for more information. Quadrangle(s

Publications - AR 2002 | Alaska Division of Geological & Geophysical

Science.gov Websites

Publications Search Statewide Maps New Releases Sales Interactive Maps Databases Sections Geologic ; Geophysical Surveys Ordering Info: Download below or please see our publication sales page for more

DIMA 3.0: Domain Interaction Map.

PubMed

Luo, Qibin; Pagel, Philipp; Vilne, Baiba; Frishman, Dmitrij

2011-01-01

Domain Interaction MAp (DIMA, available at http://webclu.bio.wzw.tum.de/dima) is a database of predicted and known interactions between protein domains. It integrates 5807 structurally known interactions imported from the iPfam and 3did databases and 46,900 domain interactions predicted by four computational methods: domain phylogenetic profiling, domain pair exclusion algorithm correlated mutations and domain interaction prediction in a discriminative way. Additionally predictions are filtered to exclude those domain pairs that are reported as non-interacting by the Negatome database. The DIMA Web site allows to calculate domain interaction networks either for a domain of interest or for entire organisms, and to explore them interactively using the Flash-based Cytoscape Web software.

Applicability of ERTS-1 to Montana geology

NASA Technical Reports Server (NTRS)

Weidman, R. M. (Principal Investigator); Alt, D. D.; Berg, R. A.; Johns, W. M.; Flood, R. E.; Hawley, K. T.; Wackwitz, L. K.

1973-01-01

The author has identified the following significant results. A detailed band 7 ERTS-1 lineament map covering western Montana and northern Idaho has been prepared and is being evaluated by direct comparison with geologic maps, by statistical plots of lineaments and known faults, and by field checking. Lineament patterns apparent in the Idaho and Boulder batholiths do not correspond to any known geologic structures. A band 5 mosaic of Montana and adjacent areas has been laid and a lineament annotation prepared for comparison with the band 7 map. All work to date indicates that ERTS-1 imagery is very useful for revealing patterns of high-angle faults, though much less useful for mapping rock units and patterns of low-angle faults. Large-scale mosaics of U-2 photographs of three test sites have been prepared for annotation and comparison with ERTS-1 maps. Mapping of Quaternary deposits in the Glacial Lake Missoula basin using U-2 color infrared transparencies has been successful resulting in the discovery of some deposits not previously mapped. Detailed work has been done for Test Site 354 D using ERTS-1 imagery; criteria for recognition of several rock types have been found. Photogeologic mapping for southeastern Montana suggest Wasatch deposits where none shown of geologic map.

GrainGenes: Changing Times, Changing Databases, Digital Evolution.

USDA-ARS?s Scientific Manuscript database

The GrainGenes database is one of few agricultural databases that had an early start on the Internet and that has changed with the times. Initial goals were to collect a wide range of data relating to the developing maps and attributes of small grains crops, and to make them easily accessible. The ...

Modernization and multiscale databases at the U.S. geological survey

USGS Publications Warehouse

Morrison, J.L.

1992-01-01

The U.S. Geological Survey (USGS) has begun a digital cartographic modernization program. Keys to that program are the creation of a multiscale database, a feature-based file structure that is derived from a spatial data model, and a series of "templates" or rules that specify the relationships between instances of entities in reality and features in the database. The database will initially hold data collected from the USGS standard map products at scales of 1:24,000, 1:100,000, and 1:2,000,000. The spatial data model is called the digital line graph-enhanced model, and the comprehensive rule set consists of collection rules, product generation rules, and conflict resolution rules. This modernization program will affect the USGS mapmaking process because both digital and graphic products will be created from the database. In addition, non-USGS map users will have more flexibility in uses of the databases. These remarks are those of the session discussant made in response to the six papers and the keynote address given in the session. ?? 1992.

Database resources of the National Center for Biotechnology Information

PubMed Central

Wheeler, David L.; Church, Deanna M.; Lash, Alex E.; Leipe, Detlef D.; Madden, Thomas L.; Pontius, Joan U.; Schuler, Gregory D.; Schriml, Lynn M.; Tatusova, Tatiana A.; Wagner, Lukas; Rapp, Barbara A.

2001-01-01

In addition to maintaining the GenBank® nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides data analysis and retrieval resources that operate on the data in GenBank and a variety of other biological data made available through NCBI’s Web site. NCBI data retrieval resources include Entrez, PubMed, LocusLink and the Taxonomy Browser. Data analysis resources include BLAST, Electronic PCR, OrfFinder, RefSeq, UniGene, HomoloGene, Database of Single Nucleotide Polymorphisms (dbSNP), Human Genome Sequencing, Human MapViewer, GeneMap’99, Human–Mouse Homology Map, Cancer Chromosome Aberration Project (CCAP), Entrez Genomes, Clusters of Orthologous Groups (COGs) database, Retroviral Genotyping Tools, Cancer Genome Anatomy Project (CGAP), SAGEmap, Gene Expression Omnibus (GEO), Online Mendelian Inheri­tance in Man (OMIM), the Molecular Modeling Database (MMDB) and the Conserved Domain Database (CDD). Augmenting many of the Web applications are custom implementations of the BLAST program optimized to search specialized data sets. All of the resources can be accessed through the NCBI home page at: http://www.ncbi.nlm.nih.gov. PMID:11125038

Database resources of the National Center for Biotechnology

PubMed Central

Wheeler, David L.; Church, Deanna M.; Federhen, Scott; Lash, Alex E.; Madden, Thomas L.; Pontius, Joan U.; Schuler, Gregory D.; Schriml, Lynn M.; Sequeira, Edwin; Tatusova, Tatiana A.; Wagner, Lukas

2003-01-01

In addition to maintaining the GenBank(R) nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides data analysis and retrieval resources for the data in GenBank and other biological data made available through NCBI's Web site. NCBI resources include Entrez, PubMed, PubMed Central (PMC), LocusLink, the NCBITaxonomy Browser, BLAST, BLAST Link (BLink), Electronic PCR (e-PCR), Open Reading Frame (ORF) Finder, References Sequence (RefSeq), UniGene, HomoloGene, ProtEST, Database of Single Nucleotide Polymorphisms (dbSNP), Human/Mouse Homology Map, Cancer Chromosome Aberration Project (CCAP), Entrez Genomes and related tools, the Map Viewer, Model Maker (MM), Evidence Viewer (EV), Clusters of Orthologous Groups (COGs) database, Retroviral Genotyping Tools, SAGEmap, Gene Expression Omnibus (GEO), Online Mendelian Inheritance in Man (OMIM), the Molecular Modeling Database (MMDB), the Conserved Domain Database (CDD), and the Conserved Domain Architecture Retrieval Tool (CDART). Augmenting many of the Web applications are custom implementations of the BLAST program optimized to search specialized data sets. All of the resources can be accessed through the NCBI home page at: http://www.ncbi.nlm.nih.gov. PMID:12519941

Publications - GMC 322 | Alaska Division of Geological & Geophysical

Science.gov Websites

Publications Search Statewide Maps New Releases Sales Interactive Maps Databases Sections Geologic Ordering Info: Download below or please see our publication sales page for more information. Quadrangle(s

Drainage identification analysis and mapping, phase 2.

DOT National Transportation Integrated Search

2017-01-01

Drainage Identification, Analysis and Mapping System (DIAMS) is a computerized database that captures and : stores relevant information associated with all aboveground and underground hydraulic structures belonging to : the New Jersey Department of T...

Karst mapping in the United States: Past, present and future

USGS Publications Warehouse

Weary, David J.; Doctor, Daniel H.

2015-01-01

The earliest known comprehensive karst map of the entire USA was published by Stringfield and LeGrand (1969), based on compilations of William E. Davies of the U.S. Geological Survey (USGS). Various versions of essentially the same map have been published since. The USGS recently published new digital maps and databases depicting the extent of known karst, potential karst, and pseudokarst areas of the United States of America including Puerto Rico and the U.S. Virgin Islands (Weary and Doctor, 2014). These maps are based primarily on the extent of potentially karstic soluble rock types, and rocks with physical properties conducive to the formation of pseudokarst features. These data were compiled and refined from multiple sources at various spatial resolutions, mostly as digital data supplied by state geological surveys. The database includes polygons delineating areas with potential for karst and that are tagged with attributes intended to facilitate classification of karst regions. Approximately 18% of the surface of the fifty United States is underlain by significantly soluble bedrock. In the eastern United States the extent of outcrop of soluble rocks provides a good first-approximation of the distribution of karst and potential karst areas. In the arid western states, the extent of soluble rock outcrop tends to overestimate the extent of regions that might be considered as karst under current climatic conditions, but the new dataset encompasses those regions nonetheless. This database will be revised as needed, and the present map will be updated as new information is incorporated.

A Spatiotemporal Database to Track Human Scrub Typhus Using the VectorMap Application

PubMed Central

Kelly, Daryl J.; Foley, Desmond H.; Richards, Allen L.

2015-01-01

Scrub typhus is a potentially fatal mite-borne febrile illness, primarily of the Asia-Pacific Rim. With an endemic area greater than 13 million km2 and millions of people at risk, scrub typhus remains an underreported, often misdiagnosed febrile illness. A comprehensive, updatable map of the true distribution of cases has been lacking, and therefore the true risk of disease within the very large endemic area remains unknown. The purpose of this study was to establish a database and map to track human scrub typhus. An online search using PubMed and the United States Armed Forces Pest Management Board Literature Retrieval System was performed to identify articles describing human scrub typhus cases both within and outside the traditionally accepted endemic regions. Using World Health Organization guidelines, stringent criteria were used to establish diagnoses for inclusion in the database. The preliminary screening of 181 scrub typhus publications yielded 145 publications that met the case criterion, 267 case records, and 13 serosurvey records that could be georeferenced, describing 13,739 probable or confirmed human cases in 28 countries. A map service has been established within VectorMap (www.vectormap.org) to explore the role that relative location of vectors, hosts, and the pathogen play in the transmission of mite-borne scrub typhus. The online display of scrub typhus cases in VectorMap illustrates their presence and provides an up-to-date geographic distribution of proven scrub typhus cases. PMID:26678263

A Spatiotemporal Database to Track Human Scrub Typhus Using the VectorMap Application.

PubMed

Kelly, Daryl J; Foley, Desmond H; Richards, Allen L

2015-12-01

Scrub typhus is a potentially fatal mite-borne febrile illness, primarily of the Asia-Pacific Rim. With an endemic area greater than 13 million km2 and millions of people at risk, scrub typhus remains an underreported, often misdiagnosed febrile illness. A comprehensive, updatable map of the true distribution of cases has been lacking, and therefore the true risk of disease within the very large endemic area remains unknown. The purpose of this study was to establish a database and map to track human scrub typhus. An online search using PubMed and the United States Armed Forces Pest Management Board Literature Retrieval System was performed to identify articles describing human scrub typhus cases both within and outside the traditionally accepted endemic regions. Using World Health Organization guidelines, stringent criteria were used to establish diagnoses for inclusion in the database. The preliminary screening of 181 scrub typhus publications yielded 145 publications that met the case criterion, 267 case records, and 13 serosurvey records that could be georeferenced, describing 13,739 probable or confirmed human cases in 28 countries. A map service has been established within VectorMap (www.vectormap.org) to explore the role that relative location of vectors, hosts, and the pathogen play in the transmission of mite-borne scrub typhus. The online display of scrub typhus cases in VectorMap illustrates their presence and provides an up-to-date geographic distribution of proven scrub typhus cases.

Applying manifold learning techniques to the CAESAR database

NASA Astrophysics Data System (ADS)

Mendoza-Schrock, Olga; Patrick, James; Arnold, Gregory; Ferrara, Matthew

2010-04-01

Understanding and organizing data is the first step toward exploiting sensor phenomenology for dismount tracking. What image features are good for distinguishing people and what measurements, or combination of measurements, can be used to classify the dataset by demographics including gender, age, and race? A particular technique, Diffusion Maps, has demonstrated the potential to extract features that intuitively make sense [1]. We want to develop an understanding of this tool by validating existing results on the Civilian American and European Surface Anthropometry Resource (CAESAR) database. This database, provided by the Air Force Research Laboratory (AFRL) Human Effectiveness Directorate and SAE International, is a rich dataset which includes 40 traditional, anthropometric measurements of 4400 human subjects. If we could specifically measure the defining features for classification, from this database, then the future question will then be to determine a subset of these features that can be measured from imagery. This paper briefly describes the Diffusion Map technique, shows potential for dimension reduction of the CAESAR database, and describes interesting problems to be further explored.

Benchmarking database performance for genomic data.

PubMed

Khushi, Matloob

2015-06-01

Genomic regions represent features such as gene annotations, transcription factor binding sites and epigenetic modifications. Performing various genomic operations such as identifying overlapping/non-overlapping regions or nearest gene annotations are common research needs. The data can be saved in a database system for easy management, however, there is no comprehensive database built-in algorithm at present to identify overlapping regions. Therefore I have developed a novel region-mapping (RegMap) SQL-based algorithm to perform genomic operations and have benchmarked the performance of different databases. Benchmarking identified that PostgreSQL extracts overlapping regions much faster than MySQL. Insertion and data uploads in PostgreSQL were also better, although general searching capability of both databases was almost equivalent. In addition, using the algorithm pair-wise, overlaps of >1000 datasets of transcription factor binding sites and histone marks, collected from previous publications, were reported and it was found that HNF4G significantly co-locates with cohesin subunit STAG1 (SA1).Inc. © 2015 Wiley Periodicals, Inc.

Rice proteome analysis: a step toward functional analysis of the rice genome.

PubMed

Komatsu, Setsuko; Tanaka, Naoki

2005-03-01

The technique of proteome analysis using 2-DE has the power to monitor global changes that occur in the protein complement of tissues and subcellular compartments. In this review, we describe construction of the rice proteome database, the cataloging of rice proteins, and the functional characterization of some of the proteins identified. Initially, proteins extracted from various tissues and organelles were separated by 2-DE and an image analyzer was used to construct a display or reference map of the proteins. The rice proteome database currently contains 23 reference maps based on 2-DE of proteins from different rice tissues and subcellular compartments. These reference maps comprise 13 129 rice proteins, and the amino acid sequences of 5092 of these proteins are entered in the database. Major proteins involved in growth or stress responses have been identified by using a proteomics approach and some of these proteins have unique functions. Furthermore, initial work has also begun on analyzing the phosphoproteome and protein-protein interactions in rice. The information obtained from the rice proteome database will aid in the molecular cloning of rice genes and in predicting the function of unknown proteins.

Proteome reference map and regulation network of neonatal rat cardiomyocyte

PubMed Central

Li, Zi-jian; Liu, Ning; Han, Qi-de; Zhang, You-yi

2011-01-01

Aim: To study and establish a proteome reference map and regulation network of neonatal rat cardiomyocyte. Methods: Cultured cardiomyocytes of neonatal rats were used. All proteins expressed in the cardiomyocytes were separated and identified by two-dimensional polyacrylamide gel electrophoresis (2-DE) and matrix-assisted laser desorption/ionization-time of flight mass spectrometry (MALDI-TOF MS). Biological networks and pathways of the neonatal rat cardiomyocytes were analyzed using the Ingenuity Pathway Analysis (IPA) program (www.ingenuity.com). A 2-DE database was made accessible on-line by Make2ddb package on a web server. Results: More than 1000 proteins were separated on 2D gels, and 148 proteins were identified. The identified proteins were used for the construction of an extensible markup language-based database. Biological networks and pathways were constructed to analyze the functions associate with cardiomyocyte proteins in the database. The 2-DE database of rat cardiomyocyte proteins can be accessed at http://2d.bjmu.edu.cn. Conclusion: A proteome reference map and regulation network of the neonatal rat cardiomyocytes have been established, which may serve as an international platform for storage, analysis and visualization of cardiomyocyte proteomic data. PMID:21841810

Vegetation Change in Interior Alaska Over the Last Four Decades

NASA Astrophysics Data System (ADS)

Huhman, H.; Dewitz, J.; Cristobal, J.; Prakash, A.

2017-12-01

The Arctic has become a generally warmer place over the past decades leading to earlier snowmelt, permafrost degradation and changing plant communities. One area in particular, vegetation change, is responding relatively rapidly to climate change, impacting the surrounding environment with changes to forest fire regime, forest type, forest resiliency, habitat availability for subsistence flora and fauna, hydrology, among others. To quantify changes in vegetation in the interior Alaska boreal forest over the last four decades, this study uses the National Land Cover Database (NLCD) decision-tree based classification methods, using both C5 and ERDAS Imagine software, to classify Landsat Surface Reflectance Images into the following NLCD-consistent vegetation classes: planted, herbaceous, shrubland, and forest (deciduous, evergreen and mixed). The results of this process are a total of four vegetation cover maps, that are freely accessible to the public, one for each decade in the 1980's, 1990's, 2000's, and a current map for 2017. These maps focus on Fairbanks, Alaska and the surrounding area covering approximately 36,140 square miles. The maps are validated with over 4,000 ground truth points collected through organizations such as the Landfire Project and the Long Term Ecological Research Network, as well as vegetation and soil spectra collected from the study area concurrent with the Landsat satellite over-passes with a Spectral Evolution PSR+ 3500 spectro-radiometer (0.35 - 2.5 μm). We anticipate these maps to be viewed by a wide user-community and may aid in preparing the residents of Alaska for changes in their subsistence food sources and will contribute to the scientific community in understanding the variety of changes that can occur in response to changing vegetation.

Location and age database for selected foraminifer samples collected by Exxon Petroleum geologists in California

USGS Publications Warehouse

Brabb, Earl E.; Parker, John M.

2003-01-01

Most of the geologic maps published for central California before 1960 were made without the benefit of age determinations from microfossils. The ages of Cretaceous and Tertiary rocks in the mostly poorly exposed and structurally complex sedimentary rocks represented in the Coast Ranges are critical in determining stratigraphic succession or lack of it, and in determining whether the juxtaposition of similar appearing but different age formations means a fault is present. Since the 1930’s, at least, oil company geologists have used microfossils to assist them in geologic mapping and in determining the environments of deposition of the sediment containing the microfossils. This information has been so confidential that some companies even coded the names of foraminifers to prevent disclosure. In the past 20 years, however, the attitude of petroleum companies about this information has changed, and many of the formerly confidential materials and reports are now available. We report here on 1,964 Exxon foraminifer samples mostly from surface localities in the San Francisco Bay region, and elsewhere in California. Most but not all the samples were plotted on U. S. Geological Survey (USGS) 7.5’ topographic maps or on obsolete USGS 15’ maps. The information from the slides can be used to update geologic maps prepared without the benefit of microfossil data, to analyze the depth and temperature of ocean water covering parts of California during the Mesozoic and Cenozoic Eras, and for solving nomenclature and other scientific problems. A similar report on more than 30,000 slides for surface samples collected by Chevron geologists has been released (Brabb and Parker, 2003), and another report provides information on slides for more than 2000 oil test wells in Northern California (Brabb, Powell, and Brocher, 2001).

MagnaportheDB: a federated solution for integrating physical and genetic map data with BAC end derived sequences for the rice blast fungus Magnaporthe grisea.

PubMed

Martin, Stanton L; Blackmon, Barbara P; Rajagopalan, Ravi; Houfek, Thomas D; Sceeles, Robert G; Denn, Sheila O; Mitchell, Thomas K; Brown, Douglas E; Wing, Rod A; Dean, Ralph A

2002-01-01

We have created a federated database for genome studies of Magnaporthe grisea, the causal agent of rice blast disease, by integrating end sequence data from BAC clones, genetic marker data and BAC contig assembly data. A library of 9216 BAC clones providing >25-fold coverage of the entire genome was end sequenced and fingerprinted by HindIII digestion. The Image/FPC software package was then used to generate an assembly of 188 contigs covering >95% of the genome. The database contains the results of this assembly integrated with hybridization data of genetic markers to the BAC library. AceDB was used for the core database engine and a MySQL relational database, populated with numerical representations of BAC clones within FPC contigs, was used to create appropriately scaled images. The database is being used to facilitate sequencing efforts. The database also allows researchers mapping known genes or other sequences of interest, rapid and easy access to the fundamental organization of the M.grisea genome. This database, MagnaportheDB, can be accessed on the web at http://www.cals.ncsu.edu/fungal_genomics/mgdatabase/int.htm.

Position-sensitive radiation monitoring (surface contamination monitor). Innovative technology summary report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

1999-06-01

The Shonka Research Associates, Inc. Position-Sensitive Radiation Monitor both detects surface radiation and prepares electronic survey map/survey report of surveyed area automatically. The electronically recorded map can be downloaded to a personal computer for review and a map/report can be generated for inclusion in work packages. Switching from beta-gamma detection to alpha detection is relatively simple and entails moving a switch position to alpha and adjusting the voltage level to an alpha detection level. No field calibration is required when switching from beta-gamma to alpha detection. The system can be used for free-release surveys because it meets the federal detectionmore » level sensitivity limits requires for surface survey instrumentation. This technology is superior to traditionally-used floor contamination monitor (FCM) and hand-held survey instrumentation because it can precisely register locations of radioactivity and accurately correlate contamination levels to specific locations. Additionally, it can collect and store continuous radiological data in database format, which can be used to produce real-time imagery as well as automated graphics of survey data. Its flexible design can accommodate a variety of detectors. The cost of the innovative technology is 13% to 57% lower than traditional methods. This technology is suited for radiological surveys of flat surfaces at US Department of Energy (DOE) nuclear facility decontamination and decommissioning (D and D) sites or similar public or commercial sites.« less

Variations in Medical Subject Headings (MeSH) mapping: from the natural language of patron terms to the controlled vocabulary of mapped lists*

PubMed Central

Gault, Lora V.; Shultz, Mary; Davies, Kathy J.

2002-01-01

Objectives: This study compared the mapping of natural language patron terms to the Medical Subject Headings (MeSH) across six MeSH interfaces for the MEDLINE database. Methods: Test data were obtained from search requests submitted by patrons to the Library of the Health Sciences, University of Illinois at Chicago, over a nine-month period. Search request statements were parsed into separate terms or phrases. Using print sources from the National Library of Medicine, Each parsed patron term was assigned corresponding MeSH terms. Each patron term was entered into each of the selected interfaces to determine how effectively they mapped to MeSH. Data were collected for mapping success, accessibility of MeSH term within mapped list, and total number of MeSH choices within each list. Results: The selected MEDLINE interfaces do not map the same patron term in the same way, nor do they consistently lead to what is considered the appropriate MeSH term. Conclusions: If searchers utilize the MEDLINE database to its fullest potential by mapping to MeSH, the results of the mapping will vary between interfaces. This variance may ultimately impact the search results. These differences should be considered when choosing a MEDLINE interface and when instructing end users. PMID:11999175

Variations in Medical Subject Headings (MeSH) mapping: from the natural language of patron terms to the controlled vocabulary of mapped lists.

PubMed

Gault, Lora V; Shultz, Mary; Davies, Kathy J

2002-04-01

This study compared the mapping of natural language patron terms to the Medical Subject Headings (MeSH) across six MeSH interfaces for the MEDLINE database. Test data were obtained from search requests submitted by patrons to the Library of the Health Sciences, University of Illinois at Chicago, over a nine-month period. Search request statements were parsed into separate terms or phrases. Using print sources from the National Library of Medicine, Each parsed patron term was assigned corresponding MeSH terms. Each patron term was entered into each of the selected interfaces to determine how effectively they mapped to MeSH. Data were collected for mapping success, accessibility of MeSH term within mapped list, and total number of MeSH choices within each list. The selected MEDLINE interfaces do not map the same patron term in the same way, nor do they consistently lead to what is considered the appropriate MeSH term. If searchers utilize the MEDLINE database to its fullest potential by mapping to MeSH, the results of the mapping will vary between interfaces. This variance may ultimately impact the search results. These differences should be considered when choosing a MEDLINE interface and when instructing end users.

The World Karst Aquifer Mapping project: concept, mapping procedure and map of Europe

NASA Astrophysics Data System (ADS)

Chen, Zhao; Auler, Augusto S.; Bakalowicz, Michel; Drew, David; Griger, Franziska; Hartmann, Jens; Jiang, Guanghui; Moosdorf, Nils; Richts, Andrea; Stevanovic, Zoran; Veni, George; Goldscheider, Nico

2017-05-01

Karst aquifers contribute substantially to freshwater supplies in many regions of the world, but are vulnerable to contamination and difficult to manage because of their unique hydrogeological characteristics. Many karst systems are hydraulically connected over wide areas and require transboundary exploration, protection and management. In order to obtain a better global overview of karst aquifers, to create a basis for sustainable international water-resources management, and to increase the awareness in the public and among decision makers, the World Karst Aquifer Mapping (WOKAM) project was established. The goal is to create a world map and database of karst aquifers, as a further development of earlier maps. This paper presents the basic concepts and the detailed mapping procedure, using France as an example to illustrate the step-by-step workflow, which includes generalization, differentiation of continuous and discontinuous carbonate and evaporite rock areas, and the identification of non-exposed karst aquifers. The map also shows selected caves and karst springs, which are collected in an associated global database. The draft karst aquifer map of Europe shows that 21.6% of the European land surface is characterized by the presence of (continuous or discontinuous) carbonate rocks; about 13.8% of the land surface is carbonate rock outcrop.

Optimal Path Planning Program for Autonomous Speed Sprayer in Orchard Using Order-Picking Algorithm

NASA Astrophysics Data System (ADS)

Park, T. S.; Park, S. J.; Hwang, K. Y.; Cho, S. I.

This study was conducted to develop a software program which computes optimal path for autonomous navigation in orchard, especially for speed sprayer. Possibilities of autonomous navigation in orchard were shown by other researches which have minimized distance error between planned path and performed path. But, research of planning an optimal path for speed sprayer in orchard is hardly founded. In this study, a digital map and a database for orchard which contains GPS coordinate information (coordinates of trees and boundary of orchard) and entity information (heights and widths of trees, radius of main stem of trees, disease of trees) was designed. An orderpicking algorithm which has been used for management of warehouse was used to calculate optimum path based on the digital map. Database for digital map was created by using Microsoft Access and graphic interface for database was made by using Microsoft Visual C++ 6.0. It was possible to search and display information about boundary of an orchard, locations of trees, daily plan for scattering chemicals and plan optimal path on different orchard based on digital map, on each circumstance (starting speed sprayer in different location, scattering chemicals for only selected trees).

[A basic research to share Fourier transform near-infrared spectrum information resource].

PubMed

Zhang, Lu-Da; Li, Jun-Hui; Zhao, Long-Lian; Zhao, Li-Li; Qin, Fang-Li; Yan, Yan-Lu

2004-08-01

A method to share the information resource in the database of Fourier transform near-infrared(FTNIR) spectrum information of agricultural products and utilize the spectrum information sufficiently is explored in this paper. Mapping spectrum information from one instrument to another is studied to express the spectrum information accurately between the instruments. Then mapping spectrum information is used to establish a mathematical model of quantitative analysis without including standard samples. The analysis result is that the relative coefficient r is 0.941 and the relative error is 3.28% between the model estimate values and the Kjeldahl's value for the protein content of twenty-two wheat samples, while the relative coefficient r is 0.963 and the relative error is 2.4% for the other model, which is established by using standard samples. It is shown that the spectrum information can be shared by using the mapping spectrum information. So it can be concluded that the spectrum information in one FTNIR spectrum information database can be transformed to another instrument's mapping spectrum information, which makes full use of the information resource in the database of FTNIR spectrum information to realize the resource sharing between different instruments.

Toward uniform probabilistic seismic hazard assessments for Southeast Asia

NASA Astrophysics Data System (ADS)

Chan, C. H.; Wang, Y.; Shi, X.; Ornthammarath, T.; Warnitchai, P.; Kosuwan, S.; Thant, M.; Nguyen, P. H.; Nguyen, L. M.; Solidum, R., Jr.; Irsyam, M.; Hidayati, S.; Sieh, K.

2017-12-01

Although most Southeast Asian countries have seismic hazard maps, various methodologies and quality result in appreciable mismatches at national boundaries. We aim to conduct a uniform assessment across the region by through standardized earthquake and fault databases, ground-shaking scenarios, and regional hazard maps. Our earthquake database contains earthquake parameters obtained from global and national seismic networks, harmonized by removal of duplicate events and the use of moment magnitude. Our active-fault database includes fault parameters from previous studies and from the databases implemented for national seismic hazard maps. Another crucial input for seismic hazard assessment is proper evaluation of ground-shaking attenuation. Since few ground-motion prediction equations (GMPEs) have used local observations from this region, we evaluated attenuation by comparison of instrumental observations and felt intensities for recent earthquakes with predicted ground shaking from published GMPEs. We then utilize the best-fitting GMPEs and site conditions into our seismic hazard assessments. Based on the database and proper GMPEs, we have constructed regional probabilistic seismic hazard maps. The assessment shows highest seismic hazard levels near those faults with high slip rates, including the Sagaing Fault in central Myanmar, the Sumatran Fault in Sumatra, the Palu-Koro, Matano and Lawanopo Faults in Sulawesi, and the Philippine Fault across several islands of the Philippines. In addition, our assessment demonstrates the important fact that regions with low earthquake probability may well have a higher aggregate probability of future earthquakes, since they encompass much larger areas than the areas of high probability. The significant irony then is that in areas of low to moderate probability, where building codes are usually to provide less seismic resilience, seismic risk is likely to be greater. Infrastructural damage in East Malaysia during the 2015 Sabah earthquake offers a case in point.

Applicability of ERTS-1 to lineament and photogeologic mapping in Montana: Preliminary report

NASA Technical Reports Server (NTRS)

Weidman, R. M.; Alt, D. D.; Flood, R. E.; Hawley, K. T.; Wackwitz, L. K.; Berg, R. B.; Johns, W. M.

1973-01-01

A lineament map prepared from a mosaic of western Montana shows about 85 lines not represented on the state geologic map, including elements of a northeast-trending set through central western Montana which merit ground truth checking and consideration in regional structural analysis. Experimental fold annotation resulted in a significant local correction to the state geologic map. Photogeologic mapping studies produced only limited success in identification of rock types, but they did result in the precise delineation of a late Cretaceous or early Tertiary volcanic field (Adel Mountain field) and the mapping of a connection between two granitic bodies shown on the state map. Imagery was used successfully to map clay pans associated with bentonite beds in gently dipping Bearpaw Shale. It is already apparent that ERTS imagery should be used to facilitate preparation of a much needed statewide tectonic map and that satellite imagery mapping, aided by ground calibration, provides and economical means to discover and correct errors in the state geologic map.

Functionally Graded Materials Database

NASA Astrophysics Data System (ADS)

Kisara, Katsuto; Konno, Tomomi; Niino, Masayuki

2008-02-01

Functionally Graded Materials Database (hereinafter referred to as FGMs Database) was open to the society via Internet in October 2002, and since then it has been managed by the Japan Aerospace Exploration Agency (JAXA). As of October 2006, the database includes 1,703 research information entries with 2,429 researchers data, 509 institution data and so on. Reading materials such as "Applicability of FGMs Technology to Space Plane" and "FGMs Application to Space Solar Power System (SSPS)" were prepared in FY 2004 and 2005, respectively. The English version of "FGMs Application to Space Solar Power System (SSPS)" is now under preparation. This present paper explains the FGMs Database, describing the research information data, the sitemap and how to use it. From the access analysis, user access results and users' interests are discussed.

Fast fingerprint database maintenance for indoor positioning based on UGV SLAM.

PubMed

Tang, Jian; Chen, Yuwei; Chen, Liang; Liu, Jingbin; Hyyppä, Juha; Kukko, Antero; Kaartinen, Harri; Hyyppä, Hannu; Chen, Ruizhi

2015-03-04

Indoor positioning technology has become more and more important in the last two decades. Utilizing Received Signal Strength Indicator (RSSI) fingerprints of Signals of OPportunity (SOP) is a promising alternative navigation solution. However, as the RSSIs vary during operation due to their physical nature and are easily affected by the environmental change, one challenge of the indoor fingerprinting method is maintaining the RSSI fingerprint database in a timely and effective manner. In this paper, a solution for rapidly updating the fingerprint database is presented, based on a self-developed Unmanned Ground Vehicles (UGV) platform NAVIS. Several SOP sensors were installed on NAVIS for collecting indoor fingerprint information, including a digital compass collecting magnetic field intensity, a light sensor collecting light intensity, and a smartphone which collects the access point number and RSSIs of the pre-installed WiFi network. The NAVIS platform generates a map of the indoor environment and collects the SOPs during processing of the mapping, and then the SOP fingerprint database is interpolated and updated in real time. Field tests were carried out to evaluate the effectiveness and efficiency of the proposed method. The results showed that the fingerprint databases can be quickly created and updated with a higher sampling frequency (5Hz) and denser reference points compared with traditional methods, and the indoor map can be generated without prior information. Moreover, environmental changes could also be detected quickly for fingerprint indoor positioning.

[Preparation of the database and the homepage on chemical accidents relating to health hazard].

PubMed

Yamamoto, M; Morita, M; Kaminuma, T

1998-01-01

We collected the data on accidents due to chemicals occurred in Japan, and prepared the database. We also set up the World Wide Web homepage containing the explanation on accidents due to chemicals and the retrieval page for the database. We designed the retrieval page so that users can search the data from keywords such as chemicals (e.g. chlorine gas, hydrogen sulfide, pesticides), places (e.g. home, factory, vehicles, tank), causes (e.g. reaction, leakage, exhaust gas) and others (e.g. cleaning, painting, transportation).

Digital Mapping Techniques '11–12 workshop proceedings

USGS Publications Warehouse

Soller, David R.

2014-01-01

At these meetings, oral and poster presentations and special discussion sessions emphasized: (1) methods for creating and publishing map products (here, "publishing" includes Web-based release); (2) field data capture software and techniques, including the use of LiDAR; (3) digital cartographic techniques; (4) migration of digital maps into ArcGIS Geodatabase formats; (5) analytical GIS techniques; and (6) continued development of the National Geologic Map Database.

Development of a database system for mapping insertional mutations onto the mouse genome with large-scale experimental data

PubMed Central

2009-01-01

Background Insertional mutagenesis is an effective method for functional genomic studies in various organisms. It can rapidly generate easily tractable mutations. A large-scale insertional mutagenesis with the piggyBac (PB) transposon is currently performed in mice at the Institute of Developmental Biology and Molecular Medicine (IDM), Fudan University in Shanghai, China. This project is carried out via collaborations among multiple groups overseeing interconnected experimental steps and generates a large volume of experimental data continuously. Therefore, the project calls for an efficient database system for recording, management, statistical analysis, and information exchange. Results This paper presents a database application called MP-PBmice (insertional mutation mapping system of PB Mutagenesis Information Center), which is developed to serve the on-going large-scale PB insertional mutagenesis project. A lightweight enterprise-level development framework Struts-Spring-Hibernate is used here to ensure constructive and flexible support to the application. The MP-PBmice database system has three major features: strict access-control, efficient workflow control, and good expandability. It supports the collaboration among different groups that enter data and exchange information on daily basis, and is capable of providing real time progress reports for the whole project. MP-PBmice can be easily adapted for other large-scale insertional mutation mapping projects and the source code of this software is freely available at http://www.idmshanghai.cn/PBmice. Conclusion MP-PBmice is a web-based application for large-scale insertional mutation mapping onto the mouse genome, implemented with the widely used framework Struts-Spring-Hibernate. This system is already in use by the on-going genome-wide PB insertional mutation mapping project at IDM, Fudan University. PMID:19958505

Physiographic rim of the Grand Canyon, Arizona: a digital database

USGS Publications Warehouse

Billingsley, George H.; Hampton, Haydee M.

1999-01-01

This Open-File report is a digital physiographic map database. This pamphlet serves to introduce and describe the digital data. There is no paper map included in the Open-File report. The report does include, however, PostScript and PDF format plot files, each containing an image of the map. For those interested in a paper plot of information contained in the database or in obtaining the PostScript plot files, please see the section entitled "For Those Who Don't Use Digital Geologic Map Databases" below. This physiographic map of the Grand Canyon is modified from previous versions by Billingsley and Hendricks (1989), and Billingsley and others (1997). The boundary is drawn approximately along the topographic rim of the Grand Canyon and its tributary canyons between Lees Ferry and Lake Mead (shown in red). Several isolated small mesas, buttes, and plateaus are within this area, which overall encompasses about 2,600 square miles. The Grand Canyon lies within the southwestern part of the Colorado Plateaus of northern Arizona between Lees Ferry, Colorado River Mile 0, and Lake Mead, Colorado River Mile 277. The Colorado River is the corridor for raft trips through the Grand Canyon. Limestone rocks of the Kaibab Formation form most of the north and south rims of the Grand Canyon, and a few volcanic rocks form the north rim of parts of the Uinkaret and Shivwits Plateaus. Limestones of the Redwall Limestone and lower Supai Group form the rim of the Hualapai Plateau area, and Limestones of Devonian and Cambrian age form the boundary rim near the mouth of Grand Canyon at the Lake Mead. The natural physiographic boundary of the Grand Canyon is roughly the area a visitor would first view any part of the Grand Canyon and its tributaries.

Report on the Project for Establishment of the Standardized Korean Laboratory Terminology Database, 2015.

PubMed

Jung, Bo Kyeung; Kim, Jeeyong; Cho, Chi Hyun; Kim, Ju Yeon; Nam, Myung Hyun; Shin, Bong Kyung; Rho, Eun Youn; Kim, Sollip; Sung, Heungsup; Kim, Shinyoung; Ki, Chang Seok; Park, Min Jung; Lee, Kap No; Yoon, Soo Young

2017-04-01

The National Health Information Standards Committee was established in 2004 in Korea. The practical subcommittee for laboratory test terminology was placed in charge of standardizing laboratory medicine terminology in Korean. We aimed to establish a standardized Korean laboratory terminology database, Korea-Logical Observation Identifier Names and Codes (K-LOINC) based on former products sponsored by this committee. The primary product was revised based on the opinions of specialists. Next, we mapped the electronic data interchange (EDI) codes that were revised in 2014, to the corresponding K-LOINC. We established a database of synonyms, including the laboratory codes of three reference laboratories and four tertiary hospitals in Korea. Furthermore, we supplemented the clinical microbiology section of K-LOINC using an alternative mapping strategy. We investigated other systems that utilize laboratory codes in order to investigate the compatibility of K-LOINC with statistical standards for a number of tests. A total of 48,990 laboratory codes were adopted (21,539 new and 16,330 revised). All of the LOINC synonyms were translated into Korean, and 39,347 Korean synonyms were added. Moreover, 21,773 synonyms were added from reference laboratories and tertiary hospitals. Alternative strategies were established for mapping within the microbiology domain. When we applied these to a smaller hospital, the mapping rate was successfully increased. Finally, we confirmed K-LOINC compatibility with other statistical standards, including a newly proposed EDI code system. This project successfully established an up-to-date standardized Korean laboratory terminology database, as well as an updated EDI mapping to facilitate the introduction of standard terminology into institutions. © 2017 The Korean Academy of Medical Sciences.

Version VI of the ESTree db: an improved tool for peach transcriptome analysis

PubMed Central

Lazzari, Barbara; Caprera, Andrea; Vecchietti, Alberto; Merelli, Ivan; Barale, Francesca; Milanesi, Luciano; Stella, Alessandra; Pozzi, Carlo

2008-01-01

Background The ESTree database (db) is a collection of Prunus persica and Prunus dulcis EST sequences that in its current version encompasses 75,404 sequences from 3 almond and 19 peach libraries. Nine peach genotypes and four peach tissues are represented, from four fruit developmental stages. The aim of this work was to implement the already existing ESTree db by adding new sequences and analysis programs. Particular care was given to the implementation of the web interface, that allows querying each of the database features. Results A Perl modular pipeline is the backbone of sequence analysis in the ESTree db project. Outputs obtained during the pipeline steps are automatically arrayed into the fields of a MySQL database. Apart from standard clustering and annotation analyses, version VI of the ESTree db encompasses new tools for tandem repeat identification, annotation against genomic Rosaceae sequences, and positioning on the database of oligomer sequences that were used in a peach microarray study. Furthermore, known protein patterns and motifs were identified by comparison to PROSITE. Based on data retrieved from sequence annotation against the UniProtKB database, a script was prepared to track positions of homologous hits on the GO tree and build statistics on the ontologies distribution in GO functional categories. EST mapping data were also integrated in the database. The PHP-based web interface was upgraded and extended. The aim of the authors was to enable querying the database according to all the biological aspects that can be investigated from the analysis of data available in the ESTree db. This is achieved by allowing multiple searches on logical subsets of sequences that represent different biological situations or features. Conclusions The version VI of ESTree db offers a broad overview on peach gene expression. Sequence analyses results contained in the database, extensively linked to external related resources, represent a large amount of information that can be queried via the tools offered in the web interface. Flexibility and modularity of the ESTree analysis pipeline and of the web interface allowed the authors to set up similar structures for different datasets, with limited manual intervention. PMID:18387211

31. Photocopy of map. Insert from Master Plan Notes Prepared ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

31. Photocopy of map. Insert from Master Plan Notes Prepared by Environmental Planning and Design, Pittsburgh, Pa. Original at Missouri Botanical Garden. 1972 MASTER PLAN 32. 'THE TREE,' SCULPTURE BY ALEXANDER CALDER, 1966 - Missouri Botanical Garden, 2345 Tower Grove Avenue, Saint Louis, Independent City, MO

Colorado Late Cenozoic Fault and Fold Database and Internet Map Server: User-friendly technology for complex information

USGS Publications Warehouse

Morgan, K.S.; Pattyn, G.J.; Morgan, M.L.

2005-01-01

Internet mapping applications for geologic data allow simultaneous data delivery and collection, enabling quick data modification while efficiently supplying the end user with information. Utilizing Web-based technologies, the Colorado Geological Survey's Colorado Late Cenozoic Fault and Fold Database was transformed from a monothematic, nonspatial Microsoft Access database into a complex information set incorporating multiple data sources. The resulting user-friendly format supports easy analysis and browsing. The core of the application is the Microsoft Access database, which contains information compiled from available literature about faults and folds that are known or suspected to have moved during the late Cenozoic. The database contains nonspatial fields such as structure type, age, and rate of movement. Geographic locations of the fault and fold traces were compiled from previous studies at 1:250,000 scale to form a spatial database containing information such as length and strike. Integration of the two databases allowed both spatial and nonspatial information to be presented on the Internet as a single dataset (http://geosurvey.state.co.us/pubs/ceno/). The user-friendly interface enables users to view and query the data in an integrated manner, thus providing multiple ways to locate desired information. Retaining the digital data format also allows continuous data updating and quick delivery of newly acquired information. This dataset is a valuable resource to anyone interested in earthquake hazards and the activity of faults and folds in Colorado. Additional geologic hazard layers and imagery may aid in decision support and hazard evaluation. The up-to-date and customizable maps are invaluable tools for researchers or the public.

Real-time Author Co-citation Mapping for Online Searching.

ERIC Educational Resources Information Center

Lin, Xia; White, Howard D.; Buzydlowski, Jan

2003-01-01

Describes the design and implementation of a prototype visualization system, AuthorLink, to enhance author searching. AuthorLink is based on author co-citation analysis and visualization mapping algorithms. AuthorLink produces interactive author maps in real time from a database of 1.26 million records supplied by the Institute for Scientific…

SenseLab

PubMed Central

Crasto, Chiquito J.; Marenco, Luis N.; Liu, Nian; Morse, Thomas M.; Cheung, Kei-Hoi; Lai, Peter C.; Bahl, Gautam; Masiar, Peter; Lam, Hugo Y.K.; Lim, Ernest; Chen, Huajin; Nadkarni, Prakash; Migliore, Michele; Miller, Perry L.; Shepherd, Gordon M.

2009-01-01

This article presents the latest developments in neuroscience information dissemination through the SenseLab suite of databases: NeuronDB, CellPropDB, ORDB, OdorDB, OdorMapDB, ModelDB and BrainPharm. These databases include information related to: (i) neuronal membrane properties and neuronal models, and (ii) genetics, genomics, proteomics and imaging studies of the olfactory system. We describe here: the new features for each database, the evolution of SenseLab’s unifying database architecture and instances of SenseLab database interoperation with other neuroscience online resources. PMID:17510162

Recently Active Traces of the Berryessa Fault, California: A Digital Database

USGS Publications Warehouse

Lienkaemper, James J.

2012-01-01

The purpose of this map is to show the location of and evidence for recent movement on active fault traces within the Berryessa section and parts of adjacent sections of the Green Valley Fault Zone, California. The location and recency of the mapped traces is primarily based on geomorphic expression of the fault as interpreted from large-scale 2010 aerial photography and from 2007 and 2011 0.5 and 1.0 meter bare-earth LiDAR imagery (that is, high-resolution topographic data). In a few places, evidence of fault creep and offset Holocene strata in trenches and natural exposures have confirmed the activity of some of these traces. This publication is formatted both as a digital database for use within a geographic information system (GIS) and for broader public access as map images that may be browsed on-line or download a summary map. The report text describes the types of scientific observations used to make the map, gives references pertaining to the fault and the evidence of faulting, and provides guidance for use of and limitations of the map.

Digital Database of Recently Active Traces of the Hayward Fault, California

USGS Publications Warehouse

Lienkaemper, James J.

2006-01-01

The purpose of this map is to show the location of and evidence for recent movement on active fault traces within the Hayward Fault Zone, California. The mapped traces represent the integration of the following three different types of data: (1) geomorphic expression, (2) creep (aseismic fault slip),and (3) trench exposures. This publication is a major revision of an earlier map (Lienkaemper, 1992), which both brings up to date the evidence for faulting and makes it available formatted both as a digital database for use within a geographic information system (GIS) and for broader public access interactively using widely available viewing software. The pamphlet describes in detail the types of scientific observations used to make the map, gives references pertaining to the fault and the evidence of faulting, and provides guidance for use of and limitations of the map. [Last revised Nov. 2008, a minor update for 2007 LiDAR and recent trench investigations; see version history below.

[Implementation of Oncomelania hupensis monitoring system based on Baidu Map].

PubMed

Zhi-Hua, Chen; Yi-Sheng, Zhu; Zhi-Qiang, Xue; Xue-Bing, Li; Yi-Min, Ding; Li-Jun, Bi; Kai-Min, Gao; You, Zhang

2017-10-25

To construct the Oncomelania hupensis snail monitoring system based on the Baidu Map. The environmental basic information about historical snail environment and existing snail environment, etc. was collected with the monitoring data about different kinds of O. hupensis snails, and then the O. hupensis snail monitoring system was built. Geographic Information System (GIS) and the electronic fence technology and Application Program Interface (API) were applied to set up the electronic fence of the snail surveillance environments, and the electronic fence was connected to the database of the snail surveillance. The O. hupensis snail monitoring system based on the Baidu Map were built up, including three modules of O. hupensis Snail Monitoring Environmental Database, Dynamic Monitoring Platform and Electronic Map. The information about monitoring O. hupensis snails could be obtained through the computer and smartphone simultaneously. The O. hupensis snail monitoring system, which is based on Baidu Map, is a visible platform to follow the process of snailsearching and molluscaciding.

Linking Supermarket Sales Data To Nutritional Information: An Informatics Feasibility Study

PubMed Central

Brinkerhoff, Kristina M.; Brewster, Philip J.; Clark, Edward B.; Jordan, Kristine C.; Cummins, Mollie R.; Hurdle, John F.

2011-01-01

Grocery sales are a data source of potential value to dietary assessment programs in public health informatics. However, the lack of a computable method for mapping between nutrient and food item information represents a major obstacle. We studied the feasibility of linking point-of-sale data to USDA-SR nutrient database information in a sustainable way. We analyzed 2,009,533 de-identified sales items purchased by 32,785 customers over a two-week period. We developed a method using the item category hierarchy in the supermarket’s database to link purchased items to records from the USDA-SR. We describe our methodology and its rationale and limitations. Approximately 70% of all items were mapped and linked to the SR; approximately 90% of all items could be mapped with an equivalent expenditure of additional effort. 100% of all items were mapped to USDA standard food groups. We conclude that mapping grocery sales data to nutritional information is feasible. PMID:22195115

National Water Quality Standards Database (NWQSD)

EPA Pesticide Factsheets

The National Water Quality Standards Database (WQSDB) provides access to EPA and state water quality standards (WQS) information in text, tables, and maps. This data source was last updated in December 2007 and will no longer be updated.

Multi-stage classification method oriented to aerial image based on low-rank recovery and multi-feature fusion sparse representation.

PubMed

Ma, Xu; Cheng, Yongmei; Hao, Shuai

2016-12-10

Automatic classification of terrain surfaces from an aerial image is essential for an autonomous unmanned aerial vehicle (UAV) landing at an unprepared site by using vision. Diverse terrain surfaces may show similar spectral properties due to the illumination and noise that easily cause poor classification performance. To address this issue, a multi-stage classification algorithm based on low-rank recovery and multi-feature fusion sparse representation is proposed. First, color moments and Gabor texture feature are extracted from training data and stacked as column vectors of a dictionary. Then we perform low-rank matrix recovery for the dictionary by using augmented Lagrange multipliers and construct a multi-stage terrain classifier. Experimental results on an aerial map database that we prepared verify the classification accuracy and robustness of the proposed method.

Supporting research and technology activities in the preparation of a three-dimensional map of the infrared sky

NASA Technical Reports Server (NTRS)

Tarter, Jill C.

1993-01-01

The final report for the period 15 Mar. 1986 to 31 Mar. 1993 for the Cooperative Agreement is presented. The purpose of this Cooperative Agreement was to collaborate with NASA civil servant and contractor personnel, and other Institute personnel in a project to use all available cataloged astronomical infrared data to construct a detailed three dimensional model of the infrared sky. Areas of research included: IRAS colors of normal stars and the infrared excesses in Be stars; galactic structure; how to use the observed IRAS source counts as a function of position to deduce the physical structure of the galaxy; IRAS properties of metal-poor stars; IRAS database studies; and solar space exploration including projects such as the Space Station Gas-Grain Simulator and the Mars Rover/Sample Return Mission.

ReMap 2018: an updated atlas of regulatory regions from an integrative analysis of DNA-binding ChIP-seq experiments.

PubMed

Chèneby, Jeanne; Gheorghe, Marius; Artufel, Marie; Mathelier, Anthony; Ballester, Benoit

2018-01-04

With this latest release of ReMap (http://remap.cisreg.eu), we present a unique collection of regulatory regions in human, as a result of a large-scale integrative analysis of ChIP-seq experiments for hundreds of transcriptional regulators (TRs) such as transcription factors, transcriptional co-activators and chromatin regulators. In 2015, we introduced the ReMap database to capture the genome regulatory space by integrating public ChIP-seq datasets, covering 237 TRs across 13 million (M) peaks. In this release, we have extended this catalog to constitute a unique collection of regulatory regions. Specifically, we have collected, analyzed and retained after quality control a total of 2829 ChIP-seq datasets available from public sources, covering a total of 485 TRs with a catalog of 80M peaks. Additionally, the updated database includes new search features for TR names as well as aliases, including cell line names and the ability to navigate the data directly within genome browsers via public track hubs. Finally, full access to this catalog is available online together with a TR binding enrichment analysis tool. ReMap 2018 provides a significant update of the ReMap database, providing an in depth view of the complexity of the regulatory landscape in human. © The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research.

Digital Bedrock Compilation: A Geodatabase Covering Forest Service Lands in California

NASA Astrophysics Data System (ADS)

Elder, D.; de La Fuente, J. A.; Reichert, M.

2010-12-01

This digital database contains bedrock geologic mapping for Forest Service lands within California. This compilation began in 2004 and the first version was completed in 2005. Second publication of this geodatabase was completed in 2010 and filled major gaps in the southern Sierra Nevada and Modoc/Medicine Lake/Warner Mountains areas. This digital map database was compiled from previously published and unpublished geologic mapping, with source mapping and review from California Geological Survey, the U.S. Geological Survey and others. Much of the source data was itself compilation mapping. This geodatabase is huge, containing ~107,000 polygons and ~ 280,000 arcs. Mapping was compiled from more than one thousand individual sources and covers over 41,000,000 acres (~166,000 km2). It was compiled from source maps at various scales - from ~ 1:4,000 to 1:250,000 and represents the best available geologic mapping at largest scale possible. An estimated 70-80% of the source information was digitized from geologic mapping at 1:62,500 scale or better. Forest Service ACT2 Enterprise Team compiled the bedrock mapping and developed a geodatabase to store this information. This geodatabase supports feature classes for polygons (e.g, map units), lines (e.g., contacts, boundaries, faults and structural lines) and points (e.g., orientation data, structural symbology). Lookup tables provide detailed information for feature class items. Lookup/type tables contain legal values and hierarchical groupings for geologic ages and lithologies. Type tables link coded values with descriptions for line and point attributes, such as line type, line location and point type. This digital mapping is at the core of many quantitative analyses and derivative map products. Queries of the database are used to produce maps and to quantify rock types of interest. These include the following: (1) ultramafic rocks - where hazards from naturally occurring asbestos are high, (2) granitic rocks - increased erosion hazards, (3) limestone, chert, sedimentary rocks - paleontological resources (Potential Fossil Yield Classification maps), (4) calcareous rocks (cave resources, water chemistry), and (5) lava flows - lava tubes (more caves). Map unit groupings (e.g., belts, terranes, tectonic & geomorphic provinces) can also be derived from the geodatabase. Digital geologic mapping was used in ground water modeling to predict effects of tunneling through the San Bernardino Mountains. Bedrock mapping is used in models that characterize watershed sediment regimes and quantify anthropogenic influences. When combined with digital geomorphology mapping, this geodatabase helps to assess landslide hazards.

Digital Mapping Techniques '08—Workshop Proceedings, Moscow, Idaho, May 18–21, 2008

USGS Publications Warehouse

Soller, David R.

2009-01-01

The Digital Mapping Techniques '08 (DMT'08) workshop was attended by more than 100 technical experts from 40 agencies, universities, and private companies, including representatives from 24 State geological surveys. This year's meeting, the twelfth in the annual series, was hosted by the Idaho Geological Survey, from May 18-21, 2008, on the University of Idaho campus in Moscow, Idaho. Each DMT workshop has been coordinated by the U.S. Geological Survey's National Geologic Map Database Project and the Association of American State Geologists (AASG). As in previous years' meetings, the objective was to foster informal discussion and exchange of technical information, principally in order to develop more efficient methods for digital mapping, cartography, GIS analysis, and information management. At this meeting, oral and poster presentations and special discussion sessions emphasized (1) methods for creating and publishing map products (here, "publishing" includes Web-based release); (2) field data capture software and techniques, including the use of LiDAR; (3) digital cartographic techniques; (4) migration of digital maps into ArcGIS Geodatabase format; (5) analytical GIS techniques; and (6) continued development of the National Geologic Map Database.

First Look--The Aerospace Database.

ERIC Educational Resources Information Center

Kavanagh, Stephen K.; Miller, Jay G.

1986-01-01

Presents overview prepared by producer of database newly available in 1985 that covers 10 subject categories: engineering, geosciences, chemistry and materials, space sciences, aeronautics, astronautics, mathematical and computer sciences, physics, social sciences, and life sciences. Database development, unique features, document delivery, sample…

First Steps and beyond: Serious Games as Preparation for Future Learning

ERIC Educational Resources Information Center

Reese, Debbie Denise

2007-01-01

Electronic game technologies can prepare novice learners for future learning of complex concepts. This paper describes the underlying instructional design, learning science, cognitive science, and game theory. A structural, or syntactic mapping (structure mapping), approach to game design can produce a game world relationally isomorphic to a…

ESTuber db: an online database for Tuber borchii EST sequences.

PubMed

Lazzari, Barbara; Caprera, Andrea; Cosentino, Cristian; Stella, Alessandra; Milanesi, Luciano; Viotti, Angelo

2007-03-08

The ESTuber database (http://www.itb.cnr.it/estuber) includes 3,271 Tuber borchii expressed sequence tags (EST). The dataset consists of 2,389 sequences from an in-house prepared cDNA library from truffle vegetative hyphae, and 882 sequences downloaded from GenBank and representing four libraries from white truffle mycelia and ascocarps at different developmental stages. An automated pipeline was prepared to process EST sequences using public software integrated by in-house developed Perl scripts. Data were collected in a MySQL database, which can be queried via a php-based web interface. Sequences included in the ESTuber db were clustered and annotated against three databases: the GenBank nr database, the UniProtKB database and a third in-house prepared database of fungi genomic sequences. An algorithm was implemented to infer statistical classification among Gene Ontology categories from the ontology occurrences deduced from the annotation procedure against the UniProtKB database. Ontologies were also deduced from the annotation of more than 130,000 EST sequences from five filamentous fungi, for intra-species comparison purposes. Further analyses were performed on the ESTuber db dataset, including tandem repeats search and comparison of the putative protein dataset inferred from the EST sequences to the PROSITE database for protein patterns identification. All the analyses were performed both on the complete sequence dataset and on the contig consensus sequences generated by the EST assembly procedure. The resulting web site is a resource of data and links related to truffle expressed genes. The Sequence Report and Contig Report pages are the web interface core structures which, together with the Text search utility and the Blast utility, allow easy access to the data stored in the database.

Quaternary Geology and Liquefaction Susceptibility, Napa, California 1:100,000 Quadrangle: A Digital Database

USGS Publications Warehouse

Sowers, Janet M.; Noller, Jay S.; Lettis, William R.

1998-01-01

Earthquake-induced ground failures such as liquefaction have historically brought loss of life and damage to property and infrastructure. Observations of the effects of historical large-magnitude earthquakes show that the distribution of liquefaction phenomena is not random. Liquefaction is restricted to areas underlain by loose, cohesionless sands and silts that are saturated with water. These areas can be delineated on the basis of thorough geologic, geomorphic, and hydrologic mapping and map analysis (Tinsley and Holzer, 1990; Youd and Perkins, 1987). Once potential liquefaction zones are delineated, appropriate public and private agencies can prepare for and mitigate seismic hazard in these zones. In this study, we create a liquefaction susceptibility map of the Napa 1:100,000 quadrangle using Quaternary geologic mapping, analysis of historical liquefaction information, groundwater data, and data from other studies. The study is atterned after state-of-the-art studies by Youd (1973) Dupre and Tinsley (1980) and Dupre (1990) in the Monterey-Santa Cruz area, Tinsley and others (1985) in the Los Angeles area, and Youd and Perkins (1987) in San Mateo County, California. The study area comprises the northern San Francisco Metropolitan Area, including the cities of Santa Rosa, Vallejo, Napa, Novato, Martinez, and Fairfield (Figure 1). Holocene estuarine deposits, Holocene stream deposits, eolian sands, and artificial fill are widely present in the region (Helley and Lajoie, 1979) and are the geologic materials of greatest concern. Six major faults capable of producing large earthquakes cross the study area, including the San Andreas, Rodgers Creek, Hayward, West Napa, Concord, and Green Valley faults (Figure 1).

Cooperation-Controlled Learning for Explicit Class Structure in Self-Organizing Maps

PubMed Central

Kamimura, Ryotaro

2014-01-01

We attempt to demonstrate the effectiveness of multiple points of view toward neural networks. By restricting ourselves to two points of view of a neuron, we propose a new type of information-theoretic method called “cooperation-controlled learning.” In this method, individual and collective neurons are distinguished from one another, and we suppose that the characteristics of individual and collective neurons are different. To implement individual and collective neurons, we prepare two networks, namely, cooperative and uncooperative networks. The roles of these networks and the roles of individual and collective neurons are controlled by the cooperation parameter. As the parameter is increased, the role of cooperative networks becomes more important in learning, and the characteristics of collective neurons become more dominant. On the other hand, when the parameter is small, individual neurons play a more important role. We applied the method to the automobile and housing data from the machine learning database and examined whether explicit class boundaries could be obtained. Experimental results showed that cooperation-controlled learning, in particular taking into account information on input units, could be used to produce clearer class structure than conventional self-organizing maps. PMID:25309950

BioBarcode: a general DNA barcoding database and server platform for Asian biodiversity resources

PubMed Central

2009-01-01

Background DNA barcoding provides a rapid, accurate, and standardized method for species-level identification using short DNA sequences. Such a standardized identification method is useful for mapping all the species on Earth, particularly when DNA sequencing technology is cheaply available. There are many nations in Asia with many biodiversity resources that need to be mapped and registered in databases. Results We have built a general DNA barcode data processing system, BioBarcode, with open source software - which is a general purpose database and server. It uses mySQL RDBMS 5.0, BLAST2, and Apache httpd server. An exemplary database of BioBarcode has around 11,300 specimen entries (including GenBank data) and registers the biological species to map their genetic relationships. The BioBarcode database contains a chromatogram viewer which improves the performance in DNA sequence analyses. Conclusion Asia has a very high degree of biodiversity and the BioBarcode database server system aims to provide an efficient bioinformatics protocol that can be freely used by Asian researchers and research organizations interested in DNA barcoding. The BioBarcode promotes the rapid acquisition of biological species DNA sequence data that meet global standards by providing specialized services, and provides useful tools that will make barcoding cheaper and faster in the biodiversity community such as standardization, depository, management, and analysis of DNA barcode data. The system can be downloaded upon request, and an exemplary server has been constructed with which to build an Asian biodiversity system http://www.asianbarcode.org. PMID:19958506

Developing a Global Database of Historic Flood Events to Support Machine Learning Flood Prediction in Google Earth Engine

NASA Astrophysics Data System (ADS)

Tellman, B.; Sullivan, J.; Kettner, A.; Brakenridge, G. R.; Slayback, D. A.; Kuhn, C.; Doyle, C.

2016-12-01

There is an increasing need to understand flood vulnerability as the societal and economic effects of flooding increases. Risk models from insurance companies and flood models from hydrologists must be calibrated based on flood observations in order to make future predictions that can improve planning and help societies reduce future disasters. Specifically, to improve these models both traditional methods of flood prediction from physically based models as well as data-driven techniques, such as machine learning, require spatial flood observation to validate model outputs and quantify uncertainty. A key dataset that is missing for flood model validation is a global historical geo-database of flood event extents. Currently, the most advanced database of historical flood extent is hosted and maintained at the Dartmouth Flood Observatory (DFO) that has catalogued 4320 floods (1985-2015) but has only mapped 5% of these floods. We are addressing this data gap by mapping the inventory of floods in the DFO database to create a first-of- its-kind, comprehensive, global and historical geospatial database of flood events. To do so, we combine water detection algorithms on MODIS and Landsat 5,7 and 8 imagery in Google Earth Engine to map discrete flood events. The created database will be available in the Earth Engine Catalogue for download by country, region, or time period. This dataset can be leveraged for new data-driven hydrologic modeling using machine learning algorithms in Earth Engine's highly parallelized computing environment, and we will show examples for New York and Senegal.

Development of a 2001 National Land Cover Database for the United States

USGS Publications Warehouse

Homer, Collin G.; Huang, Chengquan; Yang, Limin; Wylie, Bruce K.; Coan, Michael

2004-01-01

Multi-Resolution Land Characterization 2001 (MRLC 2001) is a second-generation Federal consortium designed to create an updated pool of nation-wide Landsat 5 and 7 imagery and derive a second-generation National Land Cover Database (NLCD 2001). The objectives of this multi-layer, multi-source database are two fold: first, to provide consistent land cover for all 50 States, and second, to provide a data framework which allows flexibility in developing and applying each independent data component to a wide variety of other applications. Components in the database include the following: (1) normalized imagery for three time periods per path/row, (2) ancillary data, including a 30 m Digital Elevation Model (DEM) derived into slope, aspect and slope position, (3) perpixel estimates of percent imperviousness and percent tree canopy, (4) 29 classes of land cover data derived from the imagery, ancillary data, and derivatives, (5) classification rules, confidence estimates, and metadata from the land cover classification. This database is now being developed using a Mapping Zone approach, with 66 Zones in the continental United States and 23 Zones in Alaska. Results from three initial mapping Zones show single-pixel land cover accuracies ranging from 73 to 77 percent, imperviousness accuracies ranging from 83 to 91 percent, tree canopy accuracies ranging from 78 to 93 percent, and an estimated 50 percent increase in mapping efficiency over previous methods. The database has now entered the production phase and is being created using extensive partnering in the Federal government with planned completion by 2006.

Satellite information on Orlando, Florida. [coordination of LANDSAT and Skylab data and EREP photography

NASA Technical Reports Server (NTRS)

Hannah, J. W.; Thomas, G. L.; Esparza, F.

1975-01-01

A land use map of Orange County, Florida was prepared from EREP photography while LANDSAT and EREP multispectral scanner data were used to provide more detailed information on Orlando and its suburbs. The generalized maps were prepared by tracing the patterns on an overlay, using an enlarging viewer. Digital analysis of the multispectral scanner data was basically the maximum likelihood classification method with training sample input and computer printer mapping of the results. Urban features delineated by the maps are discussed. It is concluded that computer classification, accompanied by human interpretation and manual simplification can produce land use maps which are useful on a regional, county, and city basis.

interPopula: a Python API to access the HapMap Project dataset

PubMed Central

2010-01-01

Background The HapMap project is a publicly available catalogue of common genetic variants that occur in humans, currently including several million SNPs across 1115 individuals spanning 11 different populations. This important database does not provide any programmatic access to the dataset, furthermore no standard relational database interface is provided. Results interPopula is a Python API to access the HapMap dataset. interPopula provides integration facilities with both the Python ecology of software (e.g. Biopython and matplotlib) and other relevant human population datasets (e.g. Ensembl gene annotation and UCSC Known Genes). A set of guidelines and code examples to address possible inconsistencies across heterogeneous data sources is also provided. Conclusions interPopula is a straightforward and flexible Python API that facilitates the construction of scripts and applications that require access to the HapMap dataset. PMID:21210977

Molecular Interaction Map of the Mammalian Cell Cycle Control and DNA Repair Systems

PubMed Central

Kohn, Kurt W.

1999-01-01

Eventually to understand the integrated function of the cell cycle regulatory network, we must organize the known interactions in the form of a diagram, map, and/or database. A diagram convention was designed capable of unambiguous representation of networks containing multiprotein complexes, protein modifications, and enzymes that are substrates of other enzymes. To facilitate linkage to a database, each molecular species is symbolically represented only once in each diagram. Molecular species can be located on the map by means of indexed grid coordinates. Each interaction is referenced to an annotation list where pertinent information and references can be found. Parts of the network are grouped into functional subsystems. The map shows how multiprotein complexes could assemble and function at gene promoter sites and at sites of DNA damage. It also portrays the richness of connections between the p53-Mdm2 subsystem and other parts of the network. PMID:10436023

RF-Based Location Using Interpolation Functions to Reduce Fingerprint Mapping

PubMed Central

Ezpeleta, Santiago; Claver, José M.; Pérez-Solano, Juan J.; Martí, José V.

2015-01-01

Indoor RF-based localization using fingerprint mapping requires an initial training step, which represents a time consuming process. This location methodology needs a database conformed with RSSI (Radio Signal Strength Indicator) measures from the communication transceivers taken at specific locations within the localization area. But, the real world localization environment is dynamic and it is necessary to rebuild the fingerprint database when some environmental changes are made. This paper explores the use of different interpolation functions to complete the fingerprint mapping needed to achieve the sought accuracy, thereby reducing the effort in the training step. Also, different distributions of test maps and reference points have been evaluated, showing the validity of this proposal and necessary trade-offs. Results reported show that the same or similar localization accuracy can be achieved even when only 50% of the initial fingerprint reference points are taken. PMID:26516862

Map Database for Surficial Materials in the Conterminous United States

USGS Publications Warehouse

Soller, David R.; Reheis, Marith C.; Garrity, Christopher P.; Van Sistine, D. R.

2009-01-01

The Earth's bedrock is overlain in many places by a loosely compacted and mostly unconsolidated blanket of sediments in which soils commonly are developed. These sediments generally were eroded from underlying rock, and then were transported and deposited. In places, they exceed 1000 ft (330 m) in thickness. Where the sediment blanket is absent, bedrock is either exposed or has been weathered to produce a residual soil. For the conterminous United States, a map by Soller and Reheis (2004, scale 1:5,000,000; http://pubs.usgs.gov/of/2003/of03-275/) shows these sediments and the weathered, residual material; for ease of discussion, these are referred to as 'surficial materials'. That map was produced as a PDF file, from an Adobe Illustrator-formatted version of the provisional GIS database. The provisional GIS files were further processed without modifying the content of the published map, and are here published.

Generative Topographic Mapping (GTM): Universal Tool for Data Visualization, Structure-Activity Modeling and Dataset Comparison.

PubMed

Kireeva, N; Baskin, I I; Gaspar, H A; Horvath, D; Marcou, G; Varnek, A

2012-04-01

Here, the utility of Generative Topographic Maps (GTM) for data visualization, structure-activity modeling and database comparison is evaluated, on hand of subsets of the Database of Useful Decoys (DUD). Unlike other popular dimensionality reduction approaches like Principal Component Analysis, Sammon Mapping or Self-Organizing Maps, the great advantage of GTMs is providing data probability distribution functions (PDF), both in the high-dimensional space defined by molecular descriptors and in 2D latent space. PDFs for the molecules of different activity classes were successfully used to build classification models in the framework of the Bayesian approach. Because PDFs are represented by a mixture of Gaussian functions, the Bhattacharyya kernel has been proposed as a measure of the overlap of datasets, which leads to an elegant method of global comparison of chemical libraries. Copyright © 2012 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Teaching Advanced SQL Skills: Text Bulk Loading

ERIC Educational Resources Information Center

Olsen, David; Hauser, Karina

2007-01-01

Studies show that advanced database skills are important for students to be prepared for today's highly competitive job market. A common task for database administrators is to insert a large amount of data into a database. This paper illustrates how an up-to-date, advanced database topic, namely bulk insert, can be incorporated into a database…

Human Mind Maps

ERIC Educational Resources Information Center

Glass, Tom

2016-01-01

When students generate mind maps, or concept maps, the maps are usually on paper, computer screens, or a blackboard. Human Mind Maps require few resources and little preparation. The main requirements are space where students can move around and a little creativity and imagination. Mind maps can be used for a variety of purposes, and Human Mind…

National Assessment of Oil and Gas Project: Areas of Historical Oil and Gas Exploration and Production in the United States

USGS Publications Warehouse

Biewick, Laura

2008-01-01

This report contains maps and associated spatial data showing historical oil and gas exploration and production in the United States. Because of the proprietary nature of many oil and gas well databases, the United States was divided into cells one-quarter square mile and the production status of all wells in a given cell was aggregated. Base-map reference data are included, using the U.S. Geological Survey (USGS) National Map, the USGS and American Geological Institute (AGI) Global GIS, and a World Shaded Relief map service from the ESRI Geography Network. A hardcopy map was created to synthesize recorded exploration data from 1859, when the first oil well was drilled in the U.S., to 2005. In addition to the hardcopy map product, the data have been refined and made more accessible through the use of Geographic Information System (GIS) tools. The cell data are included in a GIS database constructed for spatial analysis via the USGS Internet Map Service or by importing the data into GIS software such as ArcGIS. The USGS internet map service provides a number of useful and sophisticated geoprocessing and cartographic functions via an internet browser. Also included is a video clip of U.S. oil and gas exploration and production through time.

Towards computational improvement of DNA database indexing and short DNA query searching.

PubMed

Stojanov, Done; Koceski, Sašo; Mileva, Aleksandra; Koceska, Nataša; Bande, Cveta Martinovska

2014-09-03

In order to facilitate and speed up the search of massive DNA databases, the database is indexed at the beginning, employing a mapping function. By searching through the indexed data structure, exact query hits can be identified. If the database is searched against an annotated DNA query, such as a known promoter consensus sequence, then the starting locations and the number of potential genes can be determined. This is particularly relevant if unannotated DNA sequences have to be functionally annotated. However, indexing a massive DNA database and searching an indexed data structure with millions of entries is a time-demanding process. In this paper, we propose a fast DNA database indexing and searching approach, identifying all query hits in the database, without having to examine all entries in the indexed data structure, limiting the maximum length of a query that can be searched against the database. By applying the proposed indexing equation, the whole human genome could be indexed in 10 hours on a personal computer, under the assumption that there is enough RAM to store the indexed data structure. Analysing the methodology proposed by Reneker, we observed that hits at starting positions [Formula: see text] are not reported, if the database is searched against a query shorter than [Formula: see text] nucleotides, such that [Formula: see text] is the length of the DNA database words being mapped and [Formula: see text] is the length of the query. A solution of this drawback is also presented.

Effects of Soil Data and Simulation Unit Resolution on Quantifying Changes of Soil Organic Carbon at Regional Scale with a Biogeochemical Process Model

PubMed Central

Zhang, Liming; Yu, Dongsheng; Shi, Xuezheng; Xu, Shengxiang; Xing, Shihe; Zhao, Yongcong

2014-01-01

Soil organic carbon (SOC) models were often applied to regions with high heterogeneity, but limited spatially differentiated soil information and simulation unit resolution. This study, carried out in the Tai-Lake region of China, defined the uncertainty derived from application of the DeNitrification-DeComposition (DNDC) biogeochemical model in an area with heterogeneous soil properties and different simulation units. Three different resolution soil attribute databases, a polygonal capture of mapping units at 1∶50,000 (P5), a county-based database of 1∶50,000 (C5) and county-based database of 1∶14,000,000 (C14), were used as inputs for regional DNDC simulation. The P5 and C5 databases were combined with the 1∶50,000 digital soil map, which is the most detailed soil database for the Tai-Lake region. The C14 database was combined with 1∶14,000,000 digital soil map, which is a coarse database and is often used for modeling at a national or regional scale in China. The soil polygons of P5 database and county boundaries of C5 and C14 databases were used as basic simulation units. Results project that from 1982 to 2000, total SOC change in the top layer (0–30 cm) of the 2.3 M ha of paddy soil in the Tai-Lake region was +1.48 Tg C, −3.99 Tg C and −15.38 Tg C based on P5, C5 and C14 databases, respectively. With the total SOC change as modeled with P5 inputs as the baseline, which is the advantages of using detailed, polygon-based soil dataset, the relative deviation of C5 and C14 were 368% and 1126%, respectively. The comparison illustrates that DNDC simulation is strongly influenced by choice of fundamental geographic resolution as well as input soil attribute detail. The results also indicate that improving the framework of DNDC is essential in creating accurate models of the soil carbon cycle. PMID:24523922

The Evolution of Topics and Leading Trends over the Past 15 Years of Research on the Quality of Higher Education in China: Based on Keyword Co-Occurrence Knowledge Map Analysis of the Research Papers Published from 2000 to 2014 in the CSSCI Database

ERIC Educational Resources Information Center

Qu, Xia; Yang, Xiaotong

2016-01-01

Using CiteSpace to draw a keyword co-occurrence knowledge map for 1,048 research papers on the quality of higher education from 2000 to 2014 in the Chinese Social Sciences Citation Index database, we found that over the past 15 years, research on the quality of Chinese higher education was clearly oriented toward policies, and a good interactive…

Geologic map of Gunnison Gorge National Conservation Area, Delta and Montrose Counties, Colorado

USGS Publications Warehouse

Kellogg, Karl; Hansen, Wallace R.; Tucker, Karen S.; VanSistine, D. Paco

2004-01-01

This publication consists of a geologic map database and printed map sheet. The map sheet has a geologic map as the center piece, and accompanying text describes (1) the various geological units, (2) the uplift history of the region and how it relates to canyon downcutting, (3) the ecology of the gorge, and (4) human history. The map is intended to be used by the general public as well as scientists and goes hand-in-hand with a separate geological guide to Gunnison Gorge.

A design for the geoinformatics system

NASA Astrophysics Data System (ADS)

Allison, M. L.

2002-12-01

Informatics integrates and applies information technologies with scientific and technical disciplines. A geoinformatics system targets the spatially based sciences. The system is not a master database, but will collect pertinent information from disparate databases distributed around the world. Seamless interoperability of databases promises quantum leaps in productivity not only for scientific researchers but also for many areas of society including business and government. The system will incorporate: acquisition of analog and digital legacy data; efficient information and data retrieval mechanisms (via data mining and web services); accessibility to and application of visualization, analysis, and modeling capabilities; online workspace, software, and tutorials; GIS; integration with online scientific journal aggregates and digital libraries; access to real time data collection and dissemination; user-defined automatic notification and quality control filtering for selection of new resources; and application to field techniques such as mapping. In practical terms, such a system will provide the ability to gather data over the Web from a variety of distributed sources, regardless of computer operating systems, database formats, and servers. Search engines will gather data about any geographic location, above, on, or below ground, covering any geologic time, and at any scale or detail. A distributed network of digital geolibraries can archive permanent copies of databases at risk of being discontinued and those that continue to be maintained by the data authors. The geoinformatics system will generate results from widely distributed sources to function as a dynamic data network. Instead of posting a variety of pre-made tables, charts, or maps based on static databases, the interactive dynamic system creates these products on the fly, each time an inquiry is made, using the latest information in the appropriate databases. Thus, in the dynamic system, a map generated today may differ from one created yesterday and one to be created tomorrow, because the databases used to make it are constantly (and sometimes automatically) being updated.

Some issues in data model mapping

NASA Technical Reports Server (NTRS)

Dominick, Wayne D. (Editor); Alsabbagh, Jamal R.

1985-01-01

Numerous data models have been reported in the literature since the early 1970's. They have been used as database interfaces and as conceptual design tools. The mapping between schemas expressed according to the same data model or according to different models is interesting for theoretical and practical purposes. This paper addresses some of the issues involved in such a mapping. Of special interest are the identification of the mapping parameters and some current approaches for handling the various situations that require a mapping.

Very fast road database verification using textured 3D city models obtained from airborne imagery

NASA Astrophysics Data System (ADS)

Bulatov, Dimitri; Ziems, Marcel; Rottensteiner, Franz; Pohl, Melanie

2014-10-01

Road databases are known to be an important part of any geodata infrastructure, e.g. as the basis for urban planning or emergency services. Updating road databases for crisis events must be performed quickly and with the highest possible degree of automation. We present a semi-automatic algorithm for road verification using textured 3D city models, starting from aerial or even UAV-images. This algorithm contains two processes, which exchange input and output, but basically run independently from each other. These processes are textured urban terrain reconstruction and road verification. The first process contains a dense photogrammetric reconstruction of 3D geometry of the scene using depth maps. The second process is our core procedure, since it contains various methods for road verification. Each method represents a unique road model and a specific strategy, and thus is able to deal with a specific type of roads. Each method is designed to provide two probability distributions, where the first describes the state of a road object (correct, incorrect), and the second describes the state of its underlying road model (applicable, not applicable). Based on the Dempster-Shafer Theory, both distributions are mapped to a single distribution that refers to three states: correct, incorrect, and unknown. With respect to the interaction of both processes, the normalized elevation map and the digital orthophoto generated during 3D reconstruction are the necessary input - together with initial road database entries - for the road verification process. If the entries of the database are too obsolete or not available at all, sensor data evaluation enables classification of the road pixels of the elevation map followed by road map extraction by means of vectorization and filtering of the geometrically and topologically inconsistent objects. Depending on the time issue and availability of a geo-database for buildings, the urban terrain reconstruction procedure has semantic models of buildings, trees, and ground as output. Building s and ground are textured by means of available images. This facilitates the orientation in the model and the interactive verification of the road objects that where initially classified as unknown. The three main modules of the texturing algorithm are: Pose estimation (if the videos are not geo-referenced), occlusion analysis, and texture synthesis.

Rocky Mountain Arsenal, Sections 26 and 25 Contamination Survey. Phase 1

DTIC Science & Technology

1987-12-01

mapping specifications for scale, overlap, density, and image quality. Utilizing the aerial photography and ground control described above, orthophoto ...base maps with superimposed contours will be prepared. £ 3-2 RMA06-D.1/TPGEO 1.3 11/20/87 Orthophoto negatives will be prepared directly at the final...cdial lnvestigation/Feasibiliy Studv (RI/FS) at tile Rocky Mountain Arsenal. Tasks 4 and 6 were prepared by ’Environmental Science and Engineering (ESE

Development of Maximum Considered Earthquake Ground Motion Maps

USGS Publications Warehouse

Leyendecker, E.V.; Hunt, R.J.; Frankel, A.D.; Rukstales, K.S.

2000-01-01

The 1997 NEHRP Recommended Provisions for Seismic Regulations for New Buildings use a design procedure that is based on spectral response acceleration rather than the traditional peak ground acceleration, peak ground velocity, or zone factors. The spectral response accelerations are obtained from maps prepared following the recommendations of the Building Seismic Safety Council's (BSSC) Seismic Design Procedures Group (SDPG). The SDPG-recommended maps, the Maximum Considered Earthquake (MCE) Ground Motion Maps, are based on the U.S. Geological Survey (USGS) probabilistic hazard maps with additional modifications incorporating deterministic ground motions in selected areas and the application of engineering judgement. The MCE ground motion maps included with the 1997 NEHRP Provisions also serve as the basis for the ground motion maps used in the seismic design portions of the 2000 International Building Code and the 2000 International Residential Code. Additionally the design maps prepared for the 1997 NEHRP Provisions, combined with selected USGS probabilistic maps, are used with the 1997 NEHRP Guidelines for the Seismic Rehabilitation of Buildings.

The Topography of Names and Places.

ERIC Educational Resources Information Center

Morehead, Joe

1999-01-01

Discusses geographic naming with Geographic Information Systems (GIS) technology. Highlights include the Geographic Names Information System (GNIS) online database; United States Geological Survey (USGS) national mapping information; the USGS-Microsoft connection; and panoramic maps and the small LizardTech company. (AEF)

Mapping the literature of transcultural nursing*

PubMed Central

Murphy, Sharon C.

2006-01-01

Overview: No bibliometric studies of the literature of the field of transcultural nursing have been published. This paper describes a citation analysis as part of the project undertaken by the Nursing and Allied Health Resources Section of the Medical Library Association to map the literature of nursing. Objective: The purpose of this study was to identify the core literature and determine which databases provided the most complete access to the transcultural nursing literature. Methods: Cited references from essential source journals were analyzed for a three-year period. Eight major databases were compared for indexing coverage of the identified core list of journals. Results: This study identifies 138 core journals. Transcultural nursing relies on journal literature from associated health sciences fields in addition to nursing. Books provide an important format. Nearly all cited references were from the previous 18 years. In comparing indexing coverage among 8 major databases, 3 databases rose to the top. Conclusions: No single database can claim comprehensive indexing coverage for this broad field. It is essential to search multiple databases. Based on this study, PubMed/MEDLINE, Social Sciences Citation Index, and CINAHL provide the best coverage. Collections supporting transcultural nursing require robust access to literature beyond nursing publications. PMID:16710461

Faults, lineaments, and earthquake epicenters digital map of the Pahute Mesa 30' x 60' Quadrangle, Nevada

USGS Publications Warehouse

Minor, S.A.; Vick, G.S.; Carr, M.D.; Wahl, R.R.

1996-01-01

This map database, identified as Faults, lineaments, and earthquake epicenters digital map of the Pahute Mesa 30' X 60' quadrangle, Nevada, has been approved for release and publication by the Director of the USGS. Although this database has been subjected to rigorous review and is substantially complete, the USGS reserves the right to revise the data pursuant to further analysis and review. Furthermore, it is released on condition that neither the USGS nor the United States Government may be held liable for any damages resulting from its authorized or unauthorized use. This digital map compilation incorporates fault, air photo lineament, and earthquake epicenter data from within the Pahute Mesa 30' by 60' quadrangle, southern Nye County, Nevada (fig. 1). The compilation contributes to the U.S. Department of Energy's Yucca Mountain Project, established to determine whether or not the Yucca Mountain site is suitable for the disposal of high-level nuclear waste. Studies of local and regional faulting and earthquake activity, including the features depicted in this compilation, are carried out to help characterize seismic hazards and tectonic processes that may be relevant to the future stability of Yucca Mountain. The Yucca Mountain site is located in the central part of the Beatty 30' by 60' quadrangle approximately 15 km south of the south edge of the Pahute Mesa quadrangle (fig. 1). The U.S. Geological Survey participates in studies of the Yucca Mountain site under Interagency Agreement DE-AI08-78ET44802. The map compilation is only available on line as a digital database in ARC/INFO ASCII (Generate) and export formats. The database can be downloaded via 'anonymous ftp' from a USGS system named greenwood.cr.usgs.gov (136.177.48.5). The files are located in a directory named /pub/open-file-reports/ofr-96-0262. This directory contains a text document named 'README.1 ST' that contains database technical and explanatory documentation, including instructions for uncompressing the bundled (tar) file. In displaying the compilation it is important to note that the map data set is considered accurate when depicted at a scale of about 1:100,000; displaying the compilation at scales significantly larger than this may result in distortions and (or) mislocations of the data.

[Preparation of the database and the Internet (WWW) homepage for regulations on chemicals in Japan].

PubMed

Yamamoto, M; Morita, M; Kaminuma, T

1999-01-01

We prepared a database on chemical regulations in Japan. The regulations consist of "The Law concerning the Examination and Regulation of Manufacture, etc., of Chemical Substances", "Poisonous and Deleterious Substances", Control Law", "Waterworks Law", "Law for the Control of Household Products containing Harmful Substances", and Pesticide Residues in Food Sanitation Law". We also set up a World Wide Web (WWW) homepage containing an explanation of the law as well as chemical names, CAS registry numbers, and standards. The WWW pages contain lists of chemicals and the retrieval page for the database.

Northeast India Helminth Parasite Information Database (NEIHPID): Knowledge Base for Helminth Parasites

PubMed Central

Debnath, Manish; Kharumnuid, Graciously; Thongnibah, Welfrank; Tandon, Veena

2016-01-01

Most metazoan parasites that invade vertebrate hosts belong to three phyla: Platyhelminthes, Nematoda and Acanthocephala. Many of the parasitic members of these phyla are collectively known as helminths and are causative agents of many debilitating, deforming and lethal diseases of humans and animals. The North-East India Helminth Parasite Information Database (NEIHPID) project aimed to document and characterise the spectrum of helminth parasites in the north-eastern region of India, providing host, geographical distribution, diagnostic characters and image data. The morphology-based taxonomic data are supplemented with information on DNA sequences of nuclear, ribosomal and mitochondrial gene marker regions that aid in parasite identification. In addition, the database contains raw next generation sequencing (NGS) data for 3 foodborne trematode parasites, with more to follow. The database will also provide study material for students interested in parasite biology. Users can search the database at various taxonomic levels (phylum, class, order, superfamily, family, genus, and species), or by host, habitat and geographical location. Specimen collection locations are noted as co-ordinates in a MySQL database and can be viewed on Google maps, using Google Maps JavaScript API v3. The NEIHPID database has been made freely available at http://nepiac.nehu.ac.in/index.php PMID:27285615

Northeast India Helminth Parasite Information Database (NEIHPID): Knowledge Base for Helminth Parasites.

PubMed

Biswal, Devendra Kumar; Debnath, Manish; Kharumnuid, Graciously; Thongnibah, Welfrank; Tandon, Veena

2016-01-01

Most metazoan parasites that invade vertebrate hosts belong to three phyla: Platyhelminthes, Nematoda and Acanthocephala. Many of the parasitic members of these phyla are collectively known as helminths and are causative agents of many debilitating, deforming and lethal diseases of humans and animals. The North-East India Helminth Parasite Information Database (NEIHPID) project aimed to document and characterise the spectrum of helminth parasites in the north-eastern region of India, providing host, geographical distribution, diagnostic characters and image data. The morphology-based taxonomic data are supplemented with information on DNA sequences of nuclear, ribosomal and mitochondrial gene marker regions that aid in parasite identification. In addition, the database contains raw next generation sequencing (NGS) data for 3 foodborne trematode parasites, with more to follow. The database will also provide study material for students interested in parasite biology. Users can search the database at various taxonomic levels (phylum, class, order, superfamily, family, genus, and species), or by host, habitat and geographical location. Specimen collection locations are noted as co-ordinates in a MySQL database and can be viewed on Google maps, using Google Maps JavaScript API v3. The NEIHPID database has been made freely available at http://nepiac.nehu.ac.in/index.php.

sscMap: an extensible Java application for connecting small-molecule drugs using gene-expression signatures.

PubMed

Zhang, Shu-Dong; Gant, Timothy W

2009-07-31

Connectivity mapping is a process to recognize novel pharmacological and toxicological properties in small molecules by comparing their gene expression signatures with others in a database. A simple and robust method for connectivity mapping with increased specificity and sensitivity was recently developed, and its utility demonstrated using experimentally derived gene signatures. This paper introduces sscMap (statistically significant connections' map), a Java application designed to undertake connectivity mapping tasks using the recently published method. The software is bundled with a default collection of reference gene-expression profiles based on the publicly available dataset from the Broad Institute Connectivity Map 02, which includes data from over 7000 Affymetrix microarrays, for over 1000 small-molecule compounds, and 6100 treatment instances in 5 human cell lines. In addition, the application allows users to add their custom collections of reference profiles and is applicable to a wide range of other 'omics technologies. The utility of sscMap is two fold. First, it serves to make statistically significant connections between a user-supplied gene signature and the 6100 core reference profiles based on the Broad Institute expanded dataset. Second, it allows users to apply the same improved method to custom-built reference profiles which can be added to the database for future referencing. The software can be freely downloaded from http://purl.oclc.org/NET/sscMap.

49 CFR 535.8 - Reporting requirements.

Code of Federal Regulations, 2014 CFR

2014-10-01

... must submit information electronically through the EPA database system as the single point of entry for... agencies are not prepared to receive information through the EPA database system, manufacturers are... applications for certificates of conformity in accordance through the EPA database including both GHG emissions...

49 CFR 535.8 - Reporting requirements.

Code of Federal Regulations, 2011 CFR

2011-10-01

... information. (2) Manufacturers must submit information electronically through the EPA database system as the... year 2012 the agencies are not prepared to receive information through the EPA database system... applications for certificates of conformity in accordance through the EPA database including both GHG emissions...

49 CFR 535.8 - Reporting requirements.

Code of Federal Regulations, 2013 CFR

2013-10-01

... must submit information electronically through the EPA database system as the single point of entry for... agencies are not prepared to receive information through the EPA database system, manufacturers are... applications for certificates of conformity in accordance through the EPA database including both GHG emissions...

49 CFR 535.8 - Reporting requirements.

Code of Federal Regulations, 2012 CFR

2012-10-01

... must submit information electronically through the EPA database system as the single point of entry for... agencies are not prepared to receive information through the EPA database system, manufacturers are... applications for certificates of conformity in accordance through the EPA database including both GHG emissions...

Systematization of the protein sequence diversity in enzymes related to secondary metabolic pathways in plants, in the context of big data biology inspired by the KNApSAcK motorcycle database.

PubMed

Ikeda, Shun; Abe, Takashi; Nakamura, Yukiko; Kibinge, Nelson; Hirai Morita, Aki; Nakatani, Atsushi; Ono, Naoaki; Ikemura, Toshimichi; Nakamura, Kensuke; Altaf-Ul-Amin, Md; Kanaya, Shigehiko

2013-05-01

Biology is increasingly becoming a data-intensive science with the recent progress of the omics fields, e.g. genomics, transcriptomics, proteomics and metabolomics. The species-metabolite relationship database, KNApSAcK Core, has been widely utilized and cited in metabolomics research, and chronological analysis of that research work has helped to reveal recent trends in metabolomics research. To meet the needs of these trends, the KNApSAcK database has been extended by incorporating a secondary metabolic pathway database called Motorcycle DB. We examined the enzyme sequence diversity related to secondary metabolism by means of batch-learning self-organizing maps (BL-SOMs). Initially, we constructed a map by using a big data matrix consisting of the frequencies of all possible dipeptides in the protein sequence segments of plants and bacteria. The enzyme sequence diversity of the secondary metabolic pathways was examined by identifying clusters of segments associated with certain enzyme groups in the resulting map. The extent of diversity of 15 secondary metabolic enzyme groups is discussed. Data-intensive approaches such as BL-SOM applied to big data matrices are needed for systematizing protein sequences. Handling big data has become an inevitable part of biology.

The LncRNA Connectivity Map: Using LncRNA Signatures to Connect Small Molecules, LncRNAs, and Diseases.

PubMed

Yang, Haixiu; Shang, Desi; Xu, Yanjun; Zhang, Chunlong; Feng, Li; Sun, Zeguo; Shi, Xinrui; Zhang, Yunpeng; Han, Junwei; Su, Fei; Li, Chunquan; Li, Xia

2017-07-27

Well characterized the connections among diseases, long non-coding RNAs (lncRNAs) and drugs are important for elucidating the key roles of lncRNAs in biological mechanisms in various biological states. In this study, we constructed a database called LNCmap (LncRNA Connectivity Map), available at http://www.bio-bigdata.com/LNCmap/ , to establish the correlations among diseases, physiological processes, and the action of small molecule therapeutics by attempting to describe all biological states in terms of lncRNA signatures. By reannotating the microarray data from the Connectivity Map database, the LNCmap obtained 237 lncRNA signatures of 5916 instances corresponding to 1262 small molecular drugs. We provided a user-friendly interface for the convenient browsing, retrieval and download of the database, including detailed information and the associations of drugs and corresponding affected lncRNAs. Additionally, we developed two enrichment analysis methods for users to identify candidate drugs for a particular disease by inputting the corresponding lncRNA expression profiles or an associated lncRNA list and then comparing them to the lncRNA signatures in our database. Overall, LNCmap could significantly improve our understanding of the biological roles of lncRNAs and provide a unique resource to reveal the connections among drugs, lncRNAs and diseases.

Land cover characterization and mapping of South America for the year 2010 using Landsat 30 m satellite data

USGS Publications Warehouse

Giri, Chandra; Long, Jordan

2014-01-01

Detailed and accurate land cover and land cover change information is needed for South America because the continent is in constant flux, experiencing some of the highest rates of land cover change and forest loss in the world. The land cover data available for the entire continent are too coarse (250 m to 1 km) for resource managers, government and non-government organizations, and Earth scientists to develop conservation strategies, formulate resource management options, and monitor land cover dynamics. We used Landsat 30 m satellite data of 2010 and prepared the land cover database of South America using state-of-the-science remote sensing techniques. We produced regionally consistent and locally relevant land cover information by processing a large volume of data covering the entire continent. Our analysis revealed that in 2010, 50% of South America was covered by forests, 2.5% was covered by water, and 0.02% was covered by snow and ice. The percent forest area of South America varies from 9.5% in Uruguay to 96.5% in French Guiana. We used very high resolution (<5 m) satellite data to validate the land cover product. The overall accuracy of the 2010 South American 30-m land cover map is 89% with a Kappa coefficient of 79%. Accuracy of barren areas needs to improve possibly using multi-temporal Landsat data. An update of land cover and change database of South America with additional land cover classes is needed. The results from this study are useful for developing resource management strategies, formulating biodiversity conservation strategies, and regular land cover monitoring and forecasting.

Evaluation of EREP techniques for geological mapping. [southern Pyrenees and Ebro basin in Spain

NASA Technical Reports Server (NTRS)

Vandermeermohr, H. E. C.; Srivastava, G. S. (Principal Investigator)

1975-01-01

The author has identified the following significant results. Skylab photographs may be successfully utilized for preparing a reconnaissance geological map in the areas where no maps or semi-detailed maps exist. Large coverage of area and regional perspective from Skylab photographs can help better coordination in regional mapping. It is possible to delineate major structural trends and other features like mega-lineaments, geofractures, and faults, which have evaded their detection by conventional methods. The photointerpretability is better in areas dominated by sedimentary rocks. Rock units of smaller extent and having poor geomorphic expressions are difficult to map. Demarcation of quaternary river alluvium can be made with better precision and ease with the Skylab photographs. Stereoscopic viewing greatly helps in interpretation of area structures. Skylab photographs are not good for preparing geological maps larger than 1:270,000 scale.

The integrated web service and genome database for agricultural plants with biotechnology information.

PubMed

Kim, Changkug; Park, Dongsuk; Seol, Youngjoo; Hahn, Jangho

2011-01-01

The National Agricultural Biotechnology Information Center (NABIC) constructed an agricultural biology-based infrastructure and developed a Web based relational database for agricultural plants with biotechnology information. The NABIC has concentrated on functional genomics of major agricultural plants, building an integrated biotechnology database for agro-biotech information that focuses on genomics of major agricultural resources. This genome database provides annotated genome information from 1,039,823 records mapped to rice, Arabidopsis, and Chinese cabbage.

The HISTMAG database: combining historical, archaeomagnetic and volcanic data

NASA Astrophysics Data System (ADS)

Arneitz, Patrick; Leonhardt, Roman; Schnepp, Elisabeth; Heilig, Balázs; Mayrhofer, Franziska; Kovacs, Peter; Hejda, Pavel; Valach, Fridrich; Vadasz, Gergely; Hammerl, Christa; Egli, Ramon; Fabian, Karl; Kompein, Niko

2017-09-01

Records of the past geomagnetic field can be divided into two main categories. These are instrumental historical observations on the one hand, and field estimates based on the magnetization acquired by rocks, sediments and archaeological artefacts on the other hand. In this paper, a new database combining historical, archaeomagnetic and volcanic records is presented. HISTMAG is a relational database, implemented in MySQL, and can be accessed via a web-based interface (http://www.conrad-observatory.at/zamg/index.php/data-en/histmag-database). It combines available global historical data compilations covering the last ∼500 yr as well as archaeomagnetic and volcanic data collections from the last 50 000 yr. Furthermore, new historical and archaeomagnetic records, mainly from central Europe, have been acquired. In total, 190 427 records are currently available in the HISTMAG database, whereby the majority is related to historical declination measurements (155 525). The original database structure was complemented by new fields, which allow for a detailed description of the different data types. A user-comment function provides the possibility for a scientific discussion about individual records. Therefore, HISTMAG database supports thorough reliability and uncertainty assessments of the widely different data sets, which are an essential basis for geomagnetic field reconstructions. A database analysis revealed systematic offset for declination records derived from compass roses on historical geographical maps through comparison with other historical records, while maps created for mining activities represent a reliable source.

Fast Fingerprint Database Maintenance for Indoor Positioning Based on UGV SLAM

PubMed Central

Tang, Jian; Chen, Yuwei; Chen, Liang; Liu, Jingbin; Hyyppä, Juha; Kukko, Antero; Kaartinen, Harri; Hyyppä, Hannu; Chen, Ruizhi

2015-01-01

Indoor positioning technology has become more and more important in the last two decades. Utilizing Received Signal Strength Indicator (RSSI) fingerprints of Signals of OPportunity (SOP) is a promising alternative navigation solution. However, as the RSSIs vary during operation due to their physical nature and are easily affected by the environmental change, one challenge of the indoor fingerprinting method is maintaining the RSSI fingerprint database in a timely and effective manner. In this paper, a solution for rapidly updating the fingerprint database is presented, based on a self-developed Unmanned Ground Vehicles (UGV) platform NAVIS. Several SOP sensors were installed on NAVIS for collecting indoor fingerprint information, including a digital compass collecting magnetic field intensity, a light sensor collecting light intensity, and a smartphone which collects the access point number and RSSIs of the pre-installed WiFi network. The NAVIS platform generates a map of the indoor environment and collects the SOPs during processing of the mapping, and then the SOP fingerprint database is interpolated and updated in real time. Field tests were carried out to evaluate the effectiveness and efficiency of the proposed method. The results showed that the fingerprint databases can be quickly created and updated with a higher sampling frequency (5Hz) and denser reference points compared with traditional methods, and the indoor map can be generated without prior information. Moreover, environmental changes could also be detected quickly for fingerprint indoor positioning. PMID:25746096

Visualization and manipulating the image of a formal data structure (FDS)-based database

NASA Astrophysics Data System (ADS)

Verdiesen, Franc; de Hoop, Sylvia; Molenaar, Martien

1994-08-01

A vector map is a terrain representation with a vector-structured geometry. Molenaar formulated an object-oriented formal data structure for 3D single valued vector maps. This FDS is implemented in a database (Oracle). In this study we describe a methodology for visualizing a FDS-based database and manipulating the image. A data set retrieved by querying the database is converted into an import file for a drawing application. An objective of this study is that an end-user can alter and add terrain objects in the image. The drawing application creates an export file, that is compared with the import file. Differences between these files result in updating the database which involves checks on consistency. In this study Autocad is used for visualizing and manipulating the image of the data set. A computer program has been written for the data exchange and conversion between Oracle and Autocad. The data structure of the FDS is compared to the data structure of Autocad and the data of the FDS is converted into the structure of Autocad equal to the FDS.

Preparing College Students To Search Full-Text Databases: Is Instruction Necessary?

ERIC Educational Resources Information Center

Riley, Cheryl; Wales, Barbara

Full-text databases allow Central Missouri State University's clients to access some of the serials that libraries have had to cancel due to escalating subscription costs; EbscoHost, the subject of this study, is one such database. The database is available free to all Missouri residents. A survey was designed consisting of 21 questions intended…

Human population, urban settlement patterns and their impact on Plasmodium falciparum malaria endemicity.

PubMed

Tatem, Andrew J; Guerra, Carlos A; Kabaria, Caroline W; Noor, Abdisalan M; Hay, Simon I

2008-10-27

The efficient allocation of financial resources for malaria control and the optimal distribution of appropriate interventions require accurate information on the geographic distribution of malaria risk and of the human populations it affects. Low population densities in rural areas and high population densities in urban areas can influence malaria transmission substantially. Here, the Malaria Atlas Project (MAP) global database of Plasmodium falciparum parasite rate (PfPR) surveys, medical intelligence and contemporary population surfaces are utilized to explore these relationships and other issues involved in combining malaria risk maps with those of human population distribution in order to define populations at risk more accurately. First, an existing population surface was examined to determine if it was sufficiently detailed to be used reliably as a mask to identify areas of very low and very high population density as malaria free regions. Second, the potential of international travel and health guidelines (ITHGs) for identifying malaria free cities was examined. Third, the differences in PfPR values between surveys conducted in author-defined rural and urban areas were examined. Fourth, the ability of various global urban extent maps to reliably discriminate these author-based classifications of urban and rural in the PfPR database was investigated. Finally, the urban map that most accurately replicated the author-based classifications was analysed to examine the effects of urban classifications on PfPR values across the entire MAP database. Masks of zero population density excluded many non-zero PfPR surveys, indicating that the population surface was not detailed enough to define areas of zero transmission resulting from low population densities. In contrast, the ITHGs enabled the identification and mapping of 53 malaria free urban areas within endemic countries. Comparison of PfPR survey results showed significant differences between author-defined 'urban' and 'rural' designations in Africa, but not for the remainder of the malaria endemic world. The Global Rural Urban Mapping Project (GRUMP) urban extent mask proved most accurate for mapping these author-defined rural and urban locations, and further sub-divisions of urban extents into urban and peri-urban classes enabled the effects of high population densities on malaria transmission to be mapped and quantified. The availability of detailed, contemporary census and urban extent data for the construction of coherent and accurate global spatial population databases is often poor. These known sources of uncertainty in population surfaces and urban maps have the potential to be incorporated into future malaria burden estimates. Currently, insufficient spatial information exists globally to identify areas accurately where population density is low enough to impact upon transmission. Medical intelligence does however exist to reliably identify malaria free cities. Moreover, in Africa, urban areas that have a significant effect on malaria transmission can be mapped.

MAPPER: A personal computer map projection tool

NASA Technical Reports Server (NTRS)

Bailey, Steven A.

1993-01-01

MAPPER is a set of software tools designed to let users create and manipulate map projections on a personal computer (PC). The capability exists to generate five popular map projections. These include azimuthal, cylindrical, mercator, lambert, and sinusoidal projections. Data for projections are contained in five coordinate databases at various resolutions. MAPPER is managed by a system of pull-down windows. This interface allows the user to intuitively create, view and export maps to other platforms.

MAREANO: The national seafloor mapping programme of Norway - providing new knowledge for making informed management decisions

NASA Astrophysics Data System (ADS)

Thorsnes, T.; Bjarnadóttir, L. R.

2017-12-01

MAREANO (Marine AREA database for NOrwegian waters) is a state funded programme that has been mapping the seabed in Norwegian waters since 2005. Core datasets include detailed bathymetric data, video transect data and physical samples of the seabed. Integrated knowledge of the geology, habitats and the environmental status of the seabed is gained from the combined datasets and all results are presented on www.mareano.no. The results from MAREANO serve as a baseline of scientific information for decision-makers and which is actively used by ocean management agencies. Since 2005 the programme has grown and matured a great deal. Funding has increased twentyfold (now about 13 mill. USD), and the size of seabed mapped is now tenfold (about 22000 km2 annually). With this expansion the programme has evolved a more complex structure, regulating its activities more strictly and adhering to long-term plans. During this time the number of products has also increased, and so has the need for reviewing and improving methods. In 2015 MAREANO prepared a comprehensive report which documented and evaluated current methods and reviewed sampling/mapping standards based on management needs. Whilst the methods adopted by MAREANO to date have largely proved effective, several recent advances in technology within the various fields of seabed mapping offer great potential for improvements. Since 2014 MAREANO has been testing out some of this new technology such as acquisition of seabed data with improved resolution and autonomy in data collection, using AUVs equipped with synthetic aperture sonar and ROVs with underwater hyperspectral-sensors. Recently, MAREANO scientists have also been exploring new, more automated methods for data interpretation, classification and modelling. Preliminary results are promising and these new methods are expected to help to streamline the map production workflow in the future, thereby reducing production costs, while making even better maps that are both reproducible and more statistically robust. With its vast experience within seafloor mapping, MAREANO strives to prioritize dissemination of results through multiple channels, nationally and internationally. Currently MAREANO is also reaching out to the global community through the MAREAGLO initiative in order to share the MAREANO method.

Map showing spatial and temporal relations of mountain and continental glaciations on the Northern Plains, primarily in northern Montana and northwestern North Dakota

USGS Publications Warehouse

Fullerton, David S.; Colton, Roger B.; Bush, Charles A.; Straub, Arthur W.

2004-01-01

This report is an overview of glacial limits and glacial history on the plains in northern Montana and northeastern North Dakota (long 102?-114?W.) and also in adjacent southern Alberta and Saskatchewan, Canada. In the Rocky Mountains and on the plains adjacent to the mountains in Montana, the map also depicts spatial relations of valley glaciers and piedmont ice lobes to continental ice sheets. Glacial limits east of 102?, in the United States and also in adjacent Canada, are depicted on published maps of the U.S. Geological Survey Quaternary Geologic Atlas of the United States (I-1420) map series. The limits shown here are from data compiled for the Lethbridge, Regina, Yellowstone, and Big Horn Mountains 4? x 6? quadrangles in the Quaternary Geologic Atlas series. This geospatial database has been prepared with a degree of detail appropriate for viewing at a scale of 1:1,000,000. Because of the degree of generalization required, the map is intended for regional analysis, rather than for detailed analysis in specific areas. It depicts the geographic positions of the limits of mountain and continental glaciations and the limits of selected glacial readvances. That information provides a foundation for reconstruction of geologic history and for reconstruction. The base map is simplified. Selected hydrographic features, selected towns and cities, selected physiographic features, and a grid of 1? x 2? topographic quadrangles are included to aid the reader in location of the glacial limits and other features that are depicted here on other maps at different scales. Most of the geologic data were compiled at 1:250,000 scale. The nominal reading scale of the digitized map data is 1:1,000,000. Enlargement will not restore resolution that was lost by simplification or generalization of data. Accompanying illustrations show regional directions of ice movement from Canada into the United States during maximum Illinoian glaciation, during maximum late Wisconsin glaciation, and during a later regional glacial readvance maximum

Qualitative landslide susceptibility assessment by multicriteria analysis: A case study from San Antonio del Sur, Guantánamo, Cuba

NASA Astrophysics Data System (ADS)

Castellanos Abella, Enrique A.; Van Westen, Cees J.

Geomorphological information can be combined with decision-support tools to assess landslide hazard and risk. A heuristic model was applied to a rural municipality in eastern Cuba. The study is based on a terrain mapping units (TMU) map, generated at 1:50,000 scale by interpretation of aerial photos, satellite images and field data. Information describing 603 terrain units was collected in a database. Landslide areas were mapped in detail to classify the different failure types and parts. Three major landslide regions are recognized in the study area: coastal hills with rockfalls, shallow debris flows and old rotational rockslides denudational slopes in limestone, with very large deep-seated rockslides related to tectonic activity and the Sierra de Caujerí scarp, with large rockslides. The Caujerí scarp presents the highest hazard, with recent landslides and various signs of active processes. The different landforms and the causative factors for landslides were analyzed and used to develop the heuristic model. The model is based on weights assigned by expert judgment and organized in a number of components such as slope angle, internal relief, slope shape, geological formation, active faults, distance to drainage, distance to springs, geomorphological subunits and existing landslide zones. From these variables a hierarchical heuristic model was applied in which three levels of weights were designed for classes, variables, and criteria. The model combines all weights into a single hazard value for each pixel of the landslide hazard map. The hazard map was then divided by two scales, one with three classes for disaster managers and one with 10 detailed hazard classes for technical staff. The range of weight values and the number of existing landslides is registered for each class. The resulting increasing landslide density with higher hazard classes indicates that the output map is reliable. The landslide hazard map was used in combination with existing information on buildings and infrastructure to prepare a qualitative risk map. The complete lack of historical landslide information and geotechnical data precludes the development of quantitative deterministic or probabilistic models.

CADASTER QSPR Models for Predictions of Melting and Boiling Points of Perfluorinated Chemicals.

PubMed

Bhhatarai, Barun; Teetz, Wolfram; Liu, Tao; Öberg, Tomas; Jeliazkova, Nina; Kochev, Nikolay; Pukalov, Ognyan; Tetko, Igor V; Kovarich, Simona; Papa, Ester; Gramatica, Paola

2011-03-14

Quantitative structure property relationship (QSPR) studies on per- and polyfluorinated chemicals (PFCs) on melting point (MP) and boiling point (BP) are presented. The training and prediction chemicals used for developing and validating the models were selected from Syracuse PhysProp database and literatures. The available experimental data sets were split in two different ways: a) random selection on response value, and b) structural similarity verified by self-organizing-map (SOM), in order to propose reliable predictive models, developed only on the training sets and externally verified on the prediction sets. Individual linear and non-linear approaches based models developed by different CADASTER partners on 0D-2D Dragon descriptors, E-state descriptors and fragment based descriptors as well as consensus model and their predictions are presented. In addition, the predictive performance of the developed models was verified on a blind external validation set (EV-set) prepared using PERFORCE database on 15 MP and 25 BP data respectively. This database contains only long chain perfluoro-alkylated chemicals, particularly monitored by regulatory agencies like US-EPA and EU-REACH. QSPR models with internal and external validation on two different external prediction/validation sets and study of applicability-domain highlighting the robustness and high accuracy of the models are discussed. Finally, MPs for additional 303 PFCs and BPs for 271 PFCs were predicted for which experimental measurements are unknown. Copyright © 2011 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Long term volcanic hazard analysis in the Canary Islands

NASA Astrophysics Data System (ADS)

Becerril, L.; Galindo, I.; Laín, L.; Llorente, M.; Mancebo, M. J.

2009-04-01

Historic volcanism in Spain is restricted to the Canary Islands, a volcanic archipelago formed by seven volcanic islands. Several historic eruptions have been registered in the last five hundred years. However, and despite the huge amount of citizens and tourist in the archipelago, only a few volcanic hazard studies have been carried out. These studies are mainly focused in the developing of hazard maps in Lanzarote and Tenerife islands, especially for land use planning. The main handicap for these studies in the Canary Islands is the lack of well reported historical eruptions, but also the lack of data such as geochronological, geochemical or structural. In recent years, the use of Geographical Information Systems (GIS) and the improvement in the volcanic processes modelling has provided an important tool for volcanic hazard assessment. Although this sophisticated programs are really useful they need to be fed by a huge amount of data that sometimes, such in the case of the Canary Islands, are not available. For this reason, the Spanish Geological Survey (IGME) is developing a complete geo-referenced database for long term volcanic analysis in the Canary Islands. The Canarian Volcanic Hazard Database (HADA) is based on a GIS helping to organize and manage volcanic information efficiently. HADA includes the following groups of information: (1) 1:25.000 scale geologic maps, (2) 1:25.000 topographic maps, (3) geochronologic data, (4) geochemical data, (5) structural information, (6) climatic data. Data must pass a quality control before they are included in the database. New data are easily integrated in the database. With the HADA database the IGME has started a systematic organization of the existing data. In the near future, the IGME will generate new information to be included in HADA, such as volcanological maps of the islands, structural information, geochronological data and other information to assess long term volcanic hazard analysis. HADA will permit having enough quality information to map volcanic hazards and to run more reliable models of volcanic hazards, but in addition it aims to become a sharing system, improving communication between researchers, reducing redundant work and to be the reference for geological research in the Canary Islands.

Local Community Verification of Coastal Erosion Risks in the Arctic: Insights from Alaska's North Slope

NASA Astrophysics Data System (ADS)

Brady, M.

2016-12-01

During his historic trip to Alaska in 2015, U.S. President Barack Obama announced a collaborative effort to update maps of the Arctic region in anticipation of increased maritime access and resource development and to support climate resilience. Included in this effort is development of an Arctic-wide satellite-based digital elevation model (DEM) to provide a baseline to monitor landscape change such as coastal erosion. Focusing in Alaska's North Slope, an objective of this study is to transform emerging Arctic environment spatial data products including the new DEM into information that can support local level planning and decision-making in the face of extreme coastal erosion and related environmental threats. In pursuit of this, in 2016, 4 workshops were held in three North Slope villages highly exposed to coastal erosion. The first workshop with approximately 10 managers in Barrow solicited feedback on an erosion risk database developed in a previous research stage and installed onto the North Slope's planning Web portal. The database includes a physical risk indicator based on factors such as historical erosion and effects of sea ice loss summarized at asset locations. After a demonstration of the database, participants discussed usability aspects such as data reliability. The focus of the mapping workshops in Barrow and two smaller villages Wainwright and Kaktovik was to verify and expand the risk database by interactively mapping erosion observations and community asset impacts. Using coded stickers and paper maps of the shoreline showing USGS erosion rates, a total of 50 participants provided feedback on erosion data accuracy. Approximately 25 of the total 50 participants were elders and hunters who also provided in-depth community risk information. The workshop with managers confirmed physical risk factors used in the risk database, and revealed that the information may be relied upon to support some development decisions and better engage developers about erosion risks. Results from the three mapping workshops revealed that most participants agree that the USGS data are consistent with their observations. Also, in-depth contributions from elders and hunters confirmed that there is a need to monitor loss of specific assets including hunting grounds and historic places and associated community impacts.

Geological Mapping of the Debussy Quadrangle (H-14) Preliminary Results

NASA Astrophysics Data System (ADS)

Pegg, D. L.; Rothery, D. A.; Balme, M. R.; Conway, S. J.

2018-05-01

We present the current status of geological mapping of the Debussy quadrangle. Mapping underway as part of a program to map the entire planet at a scale of 1:3M using MESSENGER data in preparation for the BepiColombo mission.

Development of spatial density maps based on geoprocessing web services: application to tuberculosis incidence in Barcelona, Spain.

PubMed

Dominkovics, Pau; Granell, Carlos; Pérez-Navarro, Antoni; Casals, Martí; Orcau, Angels; Caylà, Joan A

2011-11-29

Health professionals and authorities strive to cope with heterogeneous data, services, and statistical models to support decision making on public health. Sophisticated analysis and distributed processing capabilities over geocoded epidemiological data are seen as driving factors to speed up control and decision making in these health risk situations. In this context, recent Web technologies and standards-based web services deployed on geospatial information infrastructures have rapidly become an efficient way to access, share, process, and visualize geocoded health-related information. Data used on this study is based on Tuberculosis (TB) cases registered in Barcelona city during 2009. Residential addresses are geocoded and loaded into a spatial database that acts as a backend database. The web-based application architecture and geoprocessing web services are designed according to the Representational State Transfer (REST) principles. These web processing services produce spatial density maps against the backend database. The results are focused on the use of the proposed web-based application to the analysis of TB cases in Barcelona. The application produces spatial density maps to ease the monitoring and decision making process by health professionals. We also include a discussion of how spatial density maps may be useful for health practitioners in such contexts. In this paper, we developed web-based client application and a set of geoprocessing web services to support specific health-spatial requirements. Spatial density maps of TB incidence were generated to help health professionals in analysis and decision-making tasks. The combined use of geographic information tools, map viewers, and geoprocessing services leads to interesting possibilities in handling health data in a spatial manner. In particular, the use of spatial density maps has been effective to identify the most affected areas and its spatial impact. This study is an attempt to demonstrate how web processing services together with web-based mapping capabilities suit the needs of health practitioners in epidemiological analysis scenarios.

Digital mapping techniques '06 - Workshop proceedings

USGS Publications Warehouse

Soller, David R.

2007-01-01

The Digital Mapping Techniques `06 (DMT`06) workshop was attended by more than 110 technical experts from 51 agencies, universities, and private companies, including representatives from 27 state geological surveys (see Appendix A of these Proceedings). This workshop was similar in nature to the previous nine meetings, which were held in Lawrence, Kansas (Soller, 1997), Champaign, Illinois (Soller, 1998), Madison, Wisconsin (Soller, 1999), Lexington, Kentucky (Soller, 2000), Tuscaloosa, Alabama (Soller, 2001), Salt Lake City, Utah (Soller, 2002), Millersville, Pennsylvania (Soller, 2003), Portland, Oregon (Soller, 2004), and Baton Rouge, Louisiana (Soller, 2005). This year?s meeting was hosted by the Ohio Geological Survey, from June 11-14, 2006, on the Ohio State University campus in Columbus, Ohio. As in the previous meetings, the objective was to foster informal discussion and exchange of technical information. It is with great pleasure that I note that the objective was successfully met, as attendees continued to share and exchange knowledge and information, and renew friendships and collegial work begun at past DMT workshops.Each DMT workshop has been coordinated by the Association of American State Geologists (AASG) and U.S. Geological Survey (USGS) Data Capture Working Group, the latter of which was formed in August 1996 to support the AASG and the USGS in their effort to build a National Geologic Map Database (see Soller, this volume, and http://ngmdb.usgs.gov/info/standards/datacapt/). The Working Group was formed because increased production efficiencies, standardization, and quality of digital map products were needed for the database - and for the State and Federal geological surveys - to provide more high-quality digital maps to the public.At the 2006 meeting, oral and poster presentations and special discussion sessions emphasized: 1) methods for creating and publishing map products (here, "publishing" includes Web-based release); 2) field data capture software and techniques, including the use of LIDAR; 3) digital cartographic techniques; 4) migration of digital maps into ArcGIS Geodatabase format; 5) analytical GIS techniques; and 6) continued development of the National Geologic Map Database.

Development of spatial density maps based on geoprocessing web services: application to tuberculosis incidence in Barcelona, Spain

PubMed Central

2011-01-01

Background Health professionals and authorities strive to cope with heterogeneous data, services, and statistical models to support decision making on public health. Sophisticated analysis and distributed processing capabilities over geocoded epidemiological data are seen as driving factors to speed up control and decision making in these health risk situations. In this context, recent Web technologies and standards-based web services deployed on geospatial information infrastructures have rapidly become an efficient way to access, share, process, and visualize geocoded health-related information. Methods Data used on this study is based on Tuberculosis (TB) cases registered in Barcelona city during 2009. Residential addresses are geocoded and loaded into a spatial database that acts as a backend database. The web-based application architecture and geoprocessing web services are designed according to the Representational State Transfer (REST) principles. These web processing services produce spatial density maps against the backend database. Results The results are focused on the use of the proposed web-based application to the analysis of TB cases in Barcelona. The application produces spatial density maps to ease the monitoring and decision making process by health professionals. We also include a discussion of how spatial density maps may be useful for health practitioners in such contexts. Conclusions In this paper, we developed web-based client application and a set of geoprocessing web services to support specific health-spatial requirements. Spatial density maps of TB incidence were generated to help health professionals in analysis and decision-making tasks. The combined use of geographic information tools, map viewers, and geoprocessing services leads to interesting possibilities in handling health data in a spatial manner. In particular, the use of spatial density maps has been effective to identify the most affected areas and its spatial impact. This study is an attempt to demonstrate how web processing services together with web-based mapping capabilities suit the needs of health practitioners in epidemiological analysis scenarios. PMID:22126392

Digital mapping techniques '00, workshop proceedings - May 17-20, 2000, Lexington, Kentucky

USGS Publications Warehouse

Soller, David R.

2000-01-01

Introduction: The Digital Mapping Techniques '00 (DMT'00) workshop was attended by 99 technical experts from 42 agencies, universities, and private companies, including representatives from 28 state geological surveys (see Appendix A). This workshop was similar in nature to the first three meetings, held in June, 1997, in Lawrence, Kansas (Soller, 1997), in May, 1998, in Champaign, Illinois (Soller, 1998a), and in May, 1999, in Madison, Wisconsin (Soller, 1999). This year's meeting was hosted by the Kentucky Geological Survey, from May 17 to 20, 2000, on the University of Kentucky campus in Lexington. As in the previous meetings, the objective was to foster informal discussion and exchange of technical information. When, based on discussions at the workshop, an attendee adopts or modifies a newly learned technique, the workshop clearly has met that objective. Evidence of learning and cooperation among participating agencies continued to be a highlight of the DMT workshops (see example in Soller, 1998b, and various papers in this volume). The meeting's general goal was to help move the state geological surveys and the USGS toward development of more cost-effective, flexible, and useful systems for digital mapping and geographic information systems (GIS) analysis. Through oral and poster presentations and special discussion sessions, emphasis was given to: 1) methods for creating and publishing map products (here, 'publishing' includes Web-based release); 2) continued development of the National Geologic Map Database; 3) progress toward building a standard geologic map data model; 4) field data-collection systems; and 5) map citation and authorship guidelines. Four representatives of the GIS hardware and software vendor community were invited to participate. The four annual DMT workshops were coordinated by the AASG/USGS Data Capture Working Group, which was formed in August, 1996, to support the Association of American State Geologists and the USGS in their effort to build a National Geologic Map Database (see Soller and Berg, this volume, and http://ncgmp.usgs.gov/ngmdbproject/standards/datacapt/). The Working Group was formed because increased production efficiencies, standardization, and quality of digital map products were needed to help the Database, and the State and Federal geological surveys, provide more high-quality digital maps to the public.

Mapping Indigenous Depth of Place

ERIC Educational Resources Information Center

Pearce, Margaret Wickens; Louis, Renee Pualani

2008-01-01

Indigenous communities have successfully used Western geospatial technologies (GT) (for example, digital maps, satellite images, geographic information systems (GIS), and global positioning systems (GPS)) since the 1970s to protect tribal resources, document territorial sovereignty, create tribal utility databases, and manage watersheds. The use…

Standardizing clinical laboratory data for secondary use.

PubMed

Abhyankar, Swapna; Demner-Fushman, Dina; McDonald, Clement J

2012-08-01

Clinical databases provide a rich source of data for answering clinical research questions. However, the variables recorded in clinical data systems are often identified by local, idiosyncratic, and sometimes redundant and/or ambiguous names (or codes) rather than unique, well-organized codes from standard code systems. This reality discourages research use of such databases, because researchers must invest considerable time in cleaning up the data before they can ask their first research question. Researchers at MIT developed MIMIC-II, a nearly complete collection of clinical data about intensive care patients. Because its data are drawn from existing clinical systems, it has many of the problems described above. In collaboration with the MIT researchers, we have begun a process of cleaning up the data and mapping the variable names and codes to LOINC codes. Our first step, which we describe here, was to map all of the laboratory test observations to LOINC codes. We were able to map 87% of the unique laboratory tests that cover 94% of the total number of laboratory tests results. Of the 13% of tests that we could not map, nearly 60% were due to test names whose real meaning could not be discerned and 29% represented tests that were not yet included in the LOINC table. These results suggest that LOINC codes cover most of laboratory tests used in critical care. We have delivered this work to the MIMIC-II researchers, who have included it in their standard MIMIC-II database release so that researchers who use this database in the future will not have to do this work. Published by Elsevier Inc.

New digital magnetic anomaly database for North America

USGS Publications Warehouse

Finn, C.A.; Pilkington, M.; Cuevas, A.; Hernandez, I.; Urrutia, J.

2001-01-01

The Geological Survey of Canada (GSC), U.S. Geological Survey (USGS), and Consejo de Recursos Minerales of Mexico (CRM) are compiling an upgraded digital magnetic anomaly database and map for North America. This trinational project is expected to be completed by late 2002.

Nencki Genomics Database--Ensembl funcgen enhanced with intersections, user data and genome-wide TFBS motifs.

PubMed

Krystkowiak, Izabella; Lenart, Jakub; Debski, Konrad; Kuterba, Piotr; Petas, Michal; Kaminska, Bozena; Dabrowski, Michal

2013-01-01

We present the Nencki Genomics Database, which extends the functionality of Ensembl Regulatory Build (funcgen) for the three species: human, mouse and rat. The key enhancements over Ensembl funcgen include the following: (i) a user can add private data, analyze them alongside the public data and manage access rights; (ii) inside the database, we provide efficient procedures for computing intersections between regulatory features and for mapping them to the genes. To Ensembl funcgen-derived data, which include data from ENCODE, we add information on conserved non-coding (putative regulatory) sequences, and on genome-wide occurrence of transcription factor binding site motifs from the current versions of two major motif libraries, namely, Jaspar and Transfac. The intersections and mapping to the genes are pre-computed for the public data, and the result of any procedure run on the data added by the users is stored back into the database, thus incrementally increasing the body of pre-computed data. As the Ensembl funcgen schema for the rat is currently not populated, our database is the first database of regulatory features for this frequently used laboratory animal. The database is accessible without registration using the mysql client: mysql -h database.nencki-genomics.org -u public. Registration is required only to add or access private data. A WSDL webservice provides access to the database from any SOAP client, including the Taverna Workbench with a graphical user interface.

Nencki Genomics Database—Ensembl funcgen enhanced with intersections, user data and genome-wide TFBS motifs

PubMed Central

Krystkowiak, Izabella; Lenart, Jakub; Debski, Konrad; Kuterba, Piotr; Petas, Michal; Kaminska, Bozena; Dabrowski, Michal

2013-01-01

We present the Nencki Genomics Database, which extends the functionality of Ensembl Regulatory Build (funcgen) for the three species: human, mouse and rat. The key enhancements over Ensembl funcgen include the following: (i) a user can add private data, analyze them alongside the public data and manage access rights; (ii) inside the database, we provide efficient procedures for computing intersections between regulatory features and for mapping them to the genes. To Ensembl funcgen-derived data, which include data from ENCODE, we add information on conserved non-coding (putative regulatory) sequences, and on genome-wide occurrence of transcription factor binding site motifs from the current versions of two major motif libraries, namely, Jaspar and Transfac. The intersections and mapping to the genes are pre-computed for the public data, and the result of any procedure run on the data added by the users is stored back into the database, thus incrementally increasing the body of pre-computed data. As the Ensembl funcgen schema for the rat is currently not populated, our database is the first database of regulatory features for this frequently used laboratory animal. The database is accessible without registration using the mysql client: mysql –h database.nencki-genomics.org –u public. Registration is required only to add or access private data. A WSDL webservice provides access to the database from any SOAP client, including the Taverna Workbench with a graphical user interface. Database URL: http://www.nencki-genomics.org. PMID:24089456

Remote sensing as tool for development of landslide databases: The case of the Messina Province (Italy) geodatabase

NASA Astrophysics Data System (ADS)

Ciampalini, Andrea; Raspini, Federico; Bianchini, Silvia; Frodella, William; Bardi, Federica; Lagomarsino, Daniela; Di Traglia, Federico; Moretti, Sandro; Proietti, Chiara; Pagliara, Paola; Onori, Roberta; Corazza, Angelo; Duro, Andrea; Basile, Giuseppe; Casagli, Nicola

2015-11-01

Landslide geodatabases, including inventories and thematic data, today are fundamental tools for national and/or local authorities in susceptibility, hazard and risk management. A well organized landslide geo-database contains different kinds of data such as past information (landslide inventory maps), ancillary data and updated remote sensing (space-borne and ground based) data, which can be integrated in order to produce landslide susceptibility maps, updated landslide inventory maps and hazard and risk assessment maps. Italy is strongly affected by landslide phenomena which cause victims and significant economic damage to buildings and infrastructure, loss of productive soils and pasture lands. In particular, the Messina Province (southern Italy) represents an area where landslides are recurrent and characterized by high magnitude, due to several predisposing factors (e.g. morphology, land use, lithologies) and different triggering mechanisms (meteorological conditions, seismicity, active tectonics and volcanic activity). For this area, a geodatabase was created by using different monitoring techniques, including remote sensing (e.g. SAR satellite ERS1/2, ENVISAT, RADARSAT-1, TerraSAR-X, COSMO-SkyMed) data, and in situ measurements (e.g. GBInSAR, damage assessment). In this paper a complete landslide geodatabase of the Messina Province, designed following the requirements of the local and national Civil Protection authorities, is presented. This geo-database was used to produce maps (e.g. susceptibility, ground deformation velocities, damage assessment, risk zonation) which today are constantly used by the Civil Protection authorities to manage the landslide hazard of the Messina Province.

PA01.34. Catagorical interpretation in Microsoft excel of jangam dravya database from Bruhat-Trayi & Laghu-Trayi

PubMed Central

Saraf, Abhijeet

2012-01-01

Purpose: Not a single drug in Ayurveda has been termed as non-medicinal. This means every Dravya has medicinal value in this world. Jangam dravya is an animal sourced medicine. In samhita Jangam Dravya are described first. So as per Krama Varnan Vichar, Jangam Dravyas are significant in this type. In Ayurvedic literature there is more literature on Audbhid & Parthiva Dravyas. I Total available nighantu: more than 25. Total available Rasa Grantha: about 145. There is no one Grantha on Jangam Dravya which describes their whole information. Jangam Dravyas are described in Ayurvedic literature in different views and in different branches. Gross description is available in Samhitas. But they aren’t in format. They are not compiled according to their Guna Karma, Upayogitwa, Vyadhiharatwa, and Kalpa etc. Their use in Chikitsa is minimal as their ready references are not available, though very much effective. So due to sheer need of compilation of these references this topic was selected for study. The basic need for study of Jangam Dravya is to prepare its whole DATABASE. So through this study Database of Jangam Dravya can be available like Jangam Dravya. Method: Selection of topic this is a fundamental & literary study, Selection of material, Selection of Database software & font, Collection of data & preparation of Master Chart, Preparation of Database, Interpretation & summarization of data. Result: So in this paper, we are going to focus on literature availability of jangam dravya with the help of modern technique like Microsoft Excel. And also how we can prepare and use the categorical interpretation of jangam dravya with help of database Conclusion: Jangam Dravyas are described in Ayurvedic literature in different views and in different branches. Importances of these dravyas are the main key point of this study.

SIDD: A Semantically Integrated Database towards a Global View of Human Disease

PubMed Central

Cheng, Liang; Wang, Guohua; Li, Jie; Zhang, Tianjiao; Xu, Peigang; Wang, Yadong

2013-01-01

Background A number of databases have been developed to collect disease-related molecular, phenotypic and environmental features (DR-MPEs), such as genes, non-coding RNAs, genetic variations, drugs, phenotypes and environmental factors. However, each of current databases focused on only one or two DR-MPEs. There is an urgent demand to develop an integrated database, which can establish semantic associations among disease-related databases and link them to provide a global view of human disease at the biological level. This database, once developed, will facilitate researchers to query various DR-MPEs through disease, and investigate disease mechanisms from different types of data. Methodology To establish an integrated disease-associated database, disease vocabularies used in different databases are mapped to Disease Ontology (DO) through semantic match. 4,284 and 4,186 disease terms from Medical Subject Headings (MeSH) and Online Mendelian Inheritance in Man (OMIM) respectively are mapped to DO. Then, the relationships between DR-MPEs and diseases are extracted and merged from different source databases for reducing the data redundancy. Conclusions A semantically integrated disease-associated database (SIDD) is developed, which integrates 18 disease-associated databases, for researchers to browse multiple types of DR-MPEs in a view. A web interface allows easy navigation for querying information through browsing a disease ontology tree or searching a disease term. Furthermore, a network visualization tool using Cytoscape Web plugin has been implemented in SIDD. It enhances the SIDD usage when viewing the relationships between diseases and DR-MPEs. The current version of SIDD (Jul 2013) documents 4,465,131 entries relating to 139,365 DR-MPEs, and to 3,824 human diseases. The database can be freely accessed from: http://mlg.hit.edu.cn/SIDD. PMID:24146757

Digital Mapping Techniques '10-Workshop Proceedings, Sacramento, California, May 16-19, 2010

USGS Publications Warehouse

Soller, David R.; Soller, David R.

2012-01-01

The Digital Mapping Techniques '10 (DMT'10) workshop was attended by 110 technical experts from 40 agencies, universities, and private companies, including representatives from 19 State geological surveys (see Appendix A). This workshop, hosted by the California Geological Survey, May 16-19, 2010, in Sacramento, California, was similar in nature to the previous 13 meetings (see Appendix B). The meeting was coordinated by the U.S. Geological Survey's (USGS) National Geologic Map Database project. As in the previous meetings, the objective was to foster informal discussion and exchange of technical information. It is with great pleasure that I note that the objective was again successfully met, as attendees continued to share and exchange knowledge and information, and renew friendships and collegial work begun at past DMT workshops. At this meeting, oral and poster presentations and special discussion sessions emphasized (1) methods for creating and publishing map products ("publishing" includes Web-based release); (2) field data capture software and techniques, including the use of LiDAR; (3) digital cartographic techniques; (4) migration of digital maps into ArcGIS Geodatabase format; (5) analytical GIS techniques; and (6) continued development of the National Geologic Map Database.

Preliminary integrated geologic map databases for the United States: Digital data for the geology of southeast Alaska

USGS Publications Warehouse

Gehrels, George E.; Berg, Henry C.

2006-01-01

The growth in the use of Geographic Information Systems (GIS) has highlighted the need for digital geologic maps that have been attributed with information about age and lithology. Such maps can be conveniently used to generate derivative maps for manifold special purposes such as mineral-resource assessment, metallogenic studies, tectonic studies, and environmental research. This report is part of a series of integrated geologic map databases that cover the entire United States. Three national-scale geologic maps that portray most or all of the United States already exist; for the conterminous U.S., King and Beikman (1974a,b) compiled a map at a scale of 1:2,500,000, Beikman (1980) compiled a map for Alaska at 1:2,500,000 scale, and for the entire U.S., Reed and others (2005a,b) compiled a map at a scale of 1:5,000,000. A digital version of the King and Beikman map was published by Schruben and others (1994). Reed and Bush (2004) produced a digital version of the Reed and others (2005a) map for the conterminous U.S. The present series of maps is intended to provide the next step in increased detail. State geologic maps that range in scale from 1:100,000 to 1:1,000,000 are available for most of the country, and digital versions of these state maps are the basis of this product. The digital geologic maps presented here are in a standardized format as ARC/INFO export files and as ArcView shape files. Data tables that relate the map units to detailed lithologic and age information accompany these GIS files. The map is delivered as a set of 1:250,000-scale quadrangle files. To the best of our ability, these quadrangle files are edge-matched with respect to geology. When the maps are merged, the combined attribute tables can be used directly with the merged maps to make derivative maps.

Detecting Spatial Patterns of Natural Hazards from the Wikipedia Knowledge Base

NASA Astrophysics Data System (ADS)

Fan, J.; Stewart, K.

2015-07-01

The Wikipedia database is a data source of immense richness and variety. Included in this database are thousands of geotagged articles, including, for example, almost real-time updates on current and historic natural hazards. This includes usercontributed information about the location of natural hazards, the extent of the disasters, and many details relating to response, impact, and recovery. In this research, a computational framework is proposed to detect spatial patterns of natural hazards from the Wikipedia database by combining topic modeling methods with spatial analysis techniques. The computation is performed on the Neon Cluster, a high performance-computing cluster at the University of Iowa. This work uses wildfires as the exemplar hazard, but this framework is easily generalizable to other types of hazards, such as hurricanes or flooding. Latent Dirichlet Allocation (LDA) modeling is first employed to train the entire English Wikipedia dump, transforming the database dump into a 500-dimension topic model. Over 230,000 geo-tagged articles are then extracted from the Wikipedia database, spatially covering the contiguous United States. The geo-tagged articles are converted into an LDA topic space based on the topic model, with each article being represented as a weighted multidimension topic vector. By treating each article's topic vector as an observed point in geographic space, a probability surface is calculated for each of the topics. In this work, Wikipedia articles about wildfires are extracted from the Wikipedia database, forming a wildfire corpus and creating a basis for the topic vector analysis. The spatial distribution of wildfire outbreaks in the US is estimated by calculating the weighted sum of the topic probability surfaces using a map algebra approach, and mapped using GIS. To provide an evaluation of the approach, the estimation is compared to wildfire hazard potential maps created by the USDA Forest service.

California Fault Parameters for the National Seismic Hazard Maps and Working Group on California Earthquake Probabilities 2007

USGS Publications Warehouse

Wills, Chris J.; Weldon, Ray J.; Bryant, W.A.

2008-01-01

This report describes development of fault parameters for the 2007 update of the National Seismic Hazard Maps and the Working Group on California Earthquake Probabilities (WGCEP, 2007). These reference parameters are contained within a database intended to be a source of values for use by scientists interested in producing either seismic hazard or deformation models to better understand the current seismic hazards in California. These parameters include descriptions of the geometry and rates of movements of faults throughout the state. These values are intended to provide a starting point for development of more sophisticated deformation models which include known rates of movement on faults as well as geodetic measurements of crustal movement and the rates of movements of the tectonic plates. The values will be used in developing the next generation of the time-independent National Seismic Hazard Maps, and the time-dependant seismic hazard calculations being developed for the WGCEP. Due to the multiple uses of this information, development of these parameters has been coordinated between USGS, CGS and SCEC. SCEC provided the database development and editing tools, in consultation with USGS, Golden. This database has been implemented in Oracle and supports electronic access (e.g., for on-the-fly access). A GUI-based application has also been developed to aid in populating the database. Both the continually updated 'living' version of this database, as well as any locked-down official releases (e.g., used in a published model for calculating earthquake probabilities or seismic shaking hazards) are part of the USGS Quaternary Fault and Fold Database http://earthquake.usgs.gov/regional/qfaults/ . CGS has been primarily responsible for updating and editing of the fault parameters, with extensive input from USGS and SCEC scientists.

EpiCollect: linking smartphones to web applications for epidemiology, ecology and community data collection.

PubMed

Aanensen, David M; Huntley, Derek M; Feil, Edward J; al-Own, Fada'a; Spratt, Brian G

2009-09-16

Epidemiologists and ecologists often collect data in the field and, on returning to their laboratory, enter their data into a database for further analysis. The recent introduction of mobile phones that utilise the open source Android operating system, and which include (among other features) both GPS and Google Maps, provide new opportunities for developing mobile phone applications, which in conjunction with web applications, allow two-way communication between field workers and their project databases. Here we describe a generic framework, consisting of mobile phone software, EpiCollect, and a web application located within www.spatialepidemiology.net. Data collected by multiple field workers can be submitted by phone, together with GPS data, to a common web database and can be displayed and analysed, along with previously collected data, using Google Maps (or Google Earth). Similarly, data from the web database can be requested and displayed on the mobile phone, again using Google Maps. Data filtering options allow the display of data submitted by the individual field workers or, for example, those data within certain values of a measured variable or a time period. Data collection frameworks utilising mobile phones with data submission to and from central databases are widely applicable and can give a field worker similar display and analysis tools on their mobile phone that they would have if viewing the data in their laboratory via the web. We demonstrate their utility for epidemiological data collection and display, and briefly discuss their application in ecological and community data collection. Furthermore, such frameworks offer great potential for recruiting 'citizen scientists' to contribute data easily to central databases through their mobile phone.

Spatial databases of the Humboldt Basin mineral resource assessment, northern Nevada

USGS Publications Warehouse

Mihalasky, Mark J.; Moyer, Lorre A.

2004-01-01

This report describes the origin, generation, and format of tract map databases for deposit types that accompany the metallic mineral resource assessment for the Humboldt River Basin, northern Nevada, (Wallace and others, 2004, Chapter 2). The deposit types include pluton-related polymetallic, sedimentary rock-hosted Au-Ag, and epithermal Au-Ag. The tract maps constitute only part of the assessment, which also includes new research and data for northern Nevada, discussions on land classification, and interpretation of the assessment maps. The purpose of the assessment was to identify areas that may have a greater favorability for undiscovered metallic mineral deposits, provide analysis of the mineral-resource favorability, and present the assessment of the Humboldt River basin and adjacent areas in a digital format using a Geographic Information System (GIS).

A Fast Approximate Algorithm for Mapping Long Reads to Large Reference Databases.

PubMed

Jain, Chirag; Dilthey, Alexander; Koren, Sergey; Aluru, Srinivas; Phillippy, Adam M

2018-04-30

Emerging single-molecule sequencing technologies from Pacific Biosciences and Oxford Nanopore have revived interest in long-read mapping algorithms. Alignment-based seed-and-extend methods demonstrate good accuracy, but face limited scalability, while faster alignment-free methods typically trade decreased precision for efficiency. In this article, we combine a fast approximate read mapping algorithm based on minimizers with a novel MinHash identity estimation technique to achieve both scalability and precision. In contrast to prior methods, we develop a mathematical framework that defines the types of mapping targets we uncover, establish probabilistic estimates of p-value and sensitivity, and demonstrate tolerance for alignment error rates up to 20%. With this framework, our algorithm automatically adapts to different minimum length and identity requirements and provides both positional and identity estimates for each mapping reported. For mapping human PacBio reads to the hg38 reference, our method is 290 × faster than Burrows-Wheeler Aligner-MEM with a lower memory footprint and recall rate of 96%. We further demonstrate the scalability of our method by mapping noisy PacBio reads (each ≥5 kbp in length) to the complete NCBI RefSeq database containing 838 Gbp of sequence and >60,000 genomes.

Bedrock geologic map of the Nashua South quadrangle, Hillsborough County, New Hampshire, and Middlesex County, Massachusetts

USGS Publications Warehouse

Walsh, Gregory J.; Jahns, Richard H.; Aleinikoff, John N.

2013-01-01

The bedrock geology of the 7.5-minute Nashua South quadrangle consists primarily of deformed Silurian metasedimentary rocks of the Berwick Formation. The metasedimentary rocks are intruded by a Late Silurian to Early Devonian diorite-gabbro suite, Devonian rocks of the Ayer Granodiorite, Devonian granitic rocks of the New Hampshire Plutonic Suite including pegmatite and the Chelmsford Granite, and Jurassic diabase dikes. The bedrock geology was mapped to study the tectonic history of the area and to provide a framework for ongoing hydrogeologic characterization of the fractured bedrock of Massachusetts and New Hampshire. This report presents mapping by G.J. Walsh and R.H. Jahns and zircon U-Pb geochronology by J.N. Aleinikoff. The complete report consists of a map, text pamphlet, and GIS database. The map and text pamphlet are only available as downloadable files (see frame at right). The GIS database is available for download in ESRITM shapefile and Google EarthTM formats, and includes contacts of bedrock geologic units, faults, outcrops, structural geologic information, photographs, and a three-dimensional model.

Feasibility of Smartphone Based Photogrammetric Point Clouds for the Generation of Accessibility Maps

NASA Astrophysics Data System (ADS)

Angelats, E.; Parés, M. E.; Kumar, P.

2018-05-01

Accessible cities with accessible services are an old claim of people with reduced mobility. But this demand is still far away of becoming a reality as lot of work is required to be done yet. First step towards accessible cities is to know about real situation of the cities and its pavement infrastructure. Detailed maps or databases on street slopes, access to sidewalks, mobility in public parks and gardens, etc. are required. In this paper, we propose to use smartphone based photogrammetric point clouds, as a starting point to create accessible maps or databases. This paper analyses the performance of these point clouds and the complexity of the image acquisition procedure required to obtain them. The paper proves, through two test cases, that smartphone technology is an economical and feasible solution to get the required information, which is quite often seek by city planners to generate accessible maps. The proposed approach paves the way to generate, in a near term, accessibility maps through the use of point clouds derived from crowdsourced smartphone imagery.

Retrospective Conversion of Solar Data Printed in "Synoptic Maps of the Solar Chromosphere": A Scientific and Librarianship Project

NASA Astrophysics Data System (ADS)

Laurenceau, A.; Aboudarham, J.; Renié, C.

2015-04-01

Between 1928 and 2003, the Observatoire de Paris published solar activity maps and their corresponding data tables, first in the Annals of the Meudon Observatory, then in the Synoptic Maps of the Solar Chromosphere. These maps represent the main solar structures in a single view and spread out on a complete Carrington rotation as well as tables of associated data, containing various information on these structures such as positions, length, morphological characteristics, and behavior. Since 2003, these maps and data tables have not been released in print, as they are only published on the online BASS2000 database, the solar database maintained by LESIA (Laboratory for space studies and astrophysical instruments). In order to make the first 80 years of observations which were available only in paper accessible and usable, the LESIA and the Library of the Observatory have started a project to digitize the publications, enter the data with the assistance of a specialized company, and then migrate the files obtained in BASS2000 and in the Heliophysics Features Catalog created in the framework of the European project HELIO.

The integrated web service and genome database for agricultural plants with biotechnology information

PubMed Central

Kim, ChangKug; Park, DongSuk; Seol, YoungJoo; Hahn, JangHo

2011-01-01

The National Agricultural Biotechnology Information Center (NABIC) constructed an agricultural biology-based infrastructure and developed a Web based relational database for agricultural plants with biotechnology information. The NABIC has concentrated on functional genomics of major agricultural plants, building an integrated biotechnology database for agro-biotech information that focuses on genomics of major agricultural resources. This genome database provides annotated genome information from 1,039,823 records mapped to rice, Arabidopsis, and Chinese cabbage. PMID:21887015

Characterizing and Mapping of Ecosystem Services (CMESs) Literature Database Version 1.0

EPA Science Inventory

Ecosystem services (ESs) represent an ecosystem’s capacity for satisfying essential human needs, directly or indirectly, above that required to maintain ecosystem integrity (structure, function and processes). The spatial characterization and mapping of ESs is an essential first ...

Completing below-ground carbon budgets for pastures, recovering forests, and mature forests of Amazonia

NASA Technical Reports Server (NTRS)

Davidson, Eric A.; Nepstad, Daniel C.; Trumbore, Susan E.

1994-01-01

The objective of this grant was to complete below-ground carbon budgets for pastures and forest soils in the Amazon. Profiles of radon and carbon dioxide were used to estimate depth distribution of CO2 production in soil. This information is necessary for determining the importance of deep roots as sources of carbon inputs. Samples were collected for measuring root biomass from new research sites at Santana de Araguaia and Trombetas. Soil gases will be analyzed for CO2 and (14)CO2, and soil organic matter will be analyzed for C-14. Estimates of soil texture from the RADAMBRASIL database were merged with climate data to calculate soil water extraction by forest canopies during the dry season. In addition, a preliminary map of areas where deep roots are needed for deep soil water was produced. A list of manuscripts and papers prepared during the reporting periods is given.

Istoriko-Astronomicheskie Issledovaniya %t Studies in the History of Astronomy

NASA Astrophysics Data System (ADS)

Idlis, G. M.

This collection of papers contains essays on a wide scope of problems in the history of astronomy, both domestic and worldwide. It includes the following basic subdivisions: Astronomy, cosmology and cosmogony of the 20th century; researches and findings; cosmology; philosophical problems; astronomy and society; publications and memoirs. Among the most interesting problems considered in the present issue: the life and achievements of the famous French astronomer C. Flammarion; theories of spiral structures of galaxies of the 1960s; a history of alternative trends in planetary cosmogony; Kant's philosophy and the anthropic principle; the development of star mapping in 16th century Europe; database preparation from the results of Russian space programs; the troublesome fates of Russian astronomers in memoirs and researches; and many others. The book is addressed to professional scientists, astronomy amateurs, teachers, and everybody interested in the history of science.

Mars Global Digital Dune Database; MC-1

USGS Publications Warehouse

Hayward, R.K.; Fenton, L.K.; Tanaka, K.L.; Titus, T.N.; Colaprete, A.; Christensen, P.R.

2010-01-01

The Mars Global Digital Dune Database presents data and describes the methodology used in creating the global database of moderate- to large-size dune fields on Mars. The database is being released in a series of U.S. Geological Survey (USGS) Open-File Reports. The first release (Hayward and others, 2007) included dune fields from 65 degrees N to 65 degrees S (http://pubs.usgs.gov/of/2007/1158/). The current release encompasses ~ 845,000 km2 of mapped dune fields from 65 degrees N to 90 degrees N latitude. Dune fields between 65 degrees S and 90 degrees S will be released in a future USGS Open-File Report. Although we have attempted to include all dune fields, some have likely been excluded for two reasons: (1) incomplete THEMIS IR (daytime) coverage may have caused us to exclude some moderate- to large-size dune fields or (2) resolution of THEMIS IR coverage (100m/pixel) certainly caused us to exclude smaller dune fields. The smallest dune fields in the database are ~ 1 km2 in area. While the moderate to large dune fields are likely to constitute the largest compilation of sediment on the planet, smaller stores of sediment of dunes are likely to be found elsewhere via higher resolution data. Thus, it should be noted that our database excludes all small dune fields and some moderate to large dune fields as well. Therefore, the absence of mapped dune fields does not mean that such dune fields do not exist and is not intended to imply a lack of saltating sand in other areas. Where availability and quality of THEMIS visible (VIS), Mars Orbiter Camera narrow angle (MOC NA), or Mars Reconnaissance Orbiter (MRO) Context Camera (CTX) images allowed, we classified dunes and included some dune slipface measurements, which were derived from gross dune morphology and represent the prevailing wind direction at the last time of significant dune modification. It was beyond the scope of this report to look at the detail needed to discern subtle dune modification. It was also beyond the scope of this report to measure all slipfaces. We attempted to include enough slipface measurements to represent the general circulation (as implied by gross dune morphology) and to give a sense of the complex nature of aeolian activity on Mars. The absence of slipface measurements in a given direction should not be taken as evidence that winds in that direction did not occur. When a dune field was located within a crater, the azimuth from crater centroid to dune field centroid was calculated, as another possible indicator of wind direction. Output from a general circulation model (GCM) is also included. In addition to polygons locating dune fields, the database includes THEMIS visible (VIS) and Mars Orbiter Camera Narrow Angle (MOC NA) images that were used to build the database. The database is presented in a variety of formats. It is presented as an ArcReader project which can be opened using the free ArcReader software. The latest version of ArcReader can be downloaded at http://www.esri.com/software/arcgis/arcreader/download.html. The database is also presented in an ArcMap project. The ArcMap project allows fuller use of the data, but requires ESRI ArcMap(Registered) software. A fuller description of the projects can be found in the NP_Dunes_ReadMe file (NP_Dunes_ReadMe folder_ and the NP_Dunes_ReadMe_GIS file (NP_Documentation folder). For users who prefer to create their own projects, the data are available in ESRI shapefile and geodatabase formats, as well as the open Geography Markup Language (GML) format. A printable map of the dunes and craters in the database is available as a Portable Document Format (PDF) document. The map is also included as a JPEG file. (NP_Documentation folder) Documentation files are available in PDF and ASCII (.txt) files. Tables are available in both Excel and ASCII (.txt)

SoyBase, The USDA-ARS Soybean Genetics and Genomics Database

USDA-ARS?s Scientific Manuscript database

SoyBase, the USDA-ARS soybean genetic database, is a comprehensive repository for professionally curated genetics, genomics and related data resources for soybean. SoyBase contains the most current genetic, physical and genomic sequence maps integrated with qualitative and quantitative traits. The...

A Toposcopic Investigation of Brain Electrical Activity Induced by Motion Sickness

DTIC Science & Technology

1992-12-01

This hypothesis explains motion sickness symptoms as the body’s natural response when the infcr- mation transmitted by the eyes, the vestibular system...consisting of the summed pixel values of their respective sets. Each of these images are then converted to a map of the mean values and a map of the variances ...Statistical mapping requires a sizable normative database of maps, a signif - icant investment of resources (11:25). Location-by-location comparisons be