Paleoceanographic insights on oxygen minimum zone expansion: Lessons from the most recent deglaciation

NASA Astrophysics Data System (ADS)

Moffitt, S. E.; Moffitt, R.; Sauthoff, W.; Davis, C. V.; Hewett, K.; Hill, T. M.

2013-12-01

The expansion of low oxygen hydrographic zones in the modern ocean, known as Oxygen Minimum Zones (OMZ), has the potential to deteriorate ecosystems, alter ocean nutrient cycling and inflict mass mortality events upon benthic and pelagic communities. During the last deglaciation (18-10 ka), large, climate-driven changes in the oxygen content of the upper ocean occurred. We propose that previous climate-driven OMZ expansions are data-rich events with which to characterize the spatial scales of OMZ hydrographic perturbation, and the temporal scales of natural OMZ variability. Here we synthesize a global compilation of marine sediment records from modern OMZ regions to investigate deglacial changes in the vertical extent, intensity, and surface area impingements of hypoxic waters upon continental margins. We surveyed sediment core records within water depths of 183-3,296 meters below sea level (mbsl) and took advantage of cores with geochemical, sedimentary or microfossil oxygenation proxies to reconstruct the timing, depth and intensity of seafloor hypoxia. OMZ maximum vertical extent during the deglaciation was variable by region: Subarctic Pacific (~600-2,900 mbsl), California Current (~330-1,500 mbsl), Baja and Mexico (~330-830 mbsl), and Equatorial Pacific and Humboldt Current (~110-3,100 mbsl). Expansion timing is regionally coherent but not globally synchronous, such that Subarctic Pacific and California Current marginal areas exhibit tight correlation and oxygenation reversals with Northern Hemisphere deglacial events (Termination 1A, Bølling-Allerød, Younger Dryas and Termination 1B). Southern regions (Baja and Mexico, and the Equatorial Pacific and Humboldt Current) exhibit hypoxia expansion prior to Termination 1A (~16 ka), and no oxygenation reversals. Our analysis provides new evidence for the geospatially coherent and temporally rapid expansion of OMZs during the last deglaciation, and reveals the extreme shallowness of the upper hypoxic boundary in coastal waters during events of global-scale warming.

Benthic foraminifera from the Arabian Sea oxygen minimum zone: towards a paleo-oxygenation proxy.

NASA Astrophysics Data System (ADS)

Clemence, Caulle; Meryem, Mojtahid; Karoliina, Koho; Andy, Gooday; Gert-Jan, Reichart; Gerhard, Schmiedl; Frans, Jorissen

2014-05-01

Benthic foraminifera from the Arabian Sea oxygen minimum zone: towards a paleo-oxygenation proxy. C. Caulle1, M. Mojtahid1, K. Koho2,3, A. Gooday4, G. J. Reichart2,3, G. Schmiedl5, F. Jorissen1 1UMR CNRS 6112 LPG-BIAF, University of Angers, 2 bd Lavoisier, 49045 Angers Cedex 2Utrecht University, Faculty of Geosciences, Department of Earth Sciences, Budapestlaan 4, 3584 CD Utrecht, The Netherlands 3Royal Netherland Institute for Sea Research (Royal NIOZ), Landsdiep 4, 1797 SZ 't Horntje (Texel) 4Southampton Oceanography Centre, Empress Dock, European Way, Southampton SO14 3ZH, UK 5Department of Geosciences, University of Hamburg, Bundesstraße 55, 20146 Hamburg, Germany The thermohaline circulation oxygenates the deep ocean sediment and therefore enables aerobic life on the sea-floor. In the past, interruption of this deep water formation occurred several times causing hypoxic to anoxic conditions on the sea-floor leading to major ecological turnover. A better understanding of the interaction between climate and bottom water oxygenation is therefore essential in order to predict future oceanic responses. Presently, permanent (stable over decadal timescale) low-oxygen conditions occur naturally at mid-water depths in the northern Indian Ocean (Arabian Sea). Oxygen Minimum Zones (OMZ) are key areas to understand the hypoxic-anoxic events and their impact on the benthic ecosystem. In this context, a good knowledge of the ecology and life cycle adaptations of the benthic foraminiferal assemblages living in these low oxygen areas is essential. A series of multicores were recovered from three transects showing an oxygen gradient across the OMZ: the Murray Ridge, the Oman margin and the Indian margin. The stations located at the same depths showed slightly different oxygen concentrations and large differences in organic matter content. These differences are mainly related to the geographic location in the Arabian Sea. We investigated at these stations live and dead benthic foraminiferal faunas. At each location, faunal diversity seems to be controlled by bottom-water oxygen content; limited diversity corresponding to low oxygen content. Foraminiferal abundances reflect organic matter quantity and quality; higher organic matter quality and quantity are related to higher foraminiferal abundances. When comparing the three study areas, similar foraminiferal species (live and dead) are observed suggesting that benthic foraminifera from the Arabian Sea predominantly respond to bottom-water oxygenation. Based on these observations, we aim to develop a paleo-oxygenation proxy based on live, dead and fossil faunas resulting from both our study and previous studies in the Arabian Sea.

Nitrous oxide as a function of oxygen and archaeal gene abundance in the North Pacific

NASA Astrophysics Data System (ADS)

Trimmer, Mark; Chronopoulou, Panagiota-Myrsini; Maanoja, Susanna T.; Upstill-Goddard, Robert C.; Kitidis, Vassilis; Purdy, Kevin J.

2016-12-01

Oceanic oxygen minimum zones are strong sources of the potent greenhouse gas N2O but its microbial source is unclear. We characterized an exponential response in N2O production to decreasing oxygen between 1 and 30 μmol O2 l-1 within and below the oxycline using 15NO2-, a relationship that held along a 550 km offshore transect in the North Pacific. Differences in the overall magnitude of N2O production were accounted for by archaeal functional gene abundance. A one-dimensional (1D) model, parameterized with our experimentally derived exponential terms, accurately reproduces N2O profiles in the top 350 m of water column and, together with a strong 45N2O signature indicated neither canonical nor nitrifier-denitrification production while statistical modelling supported production by archaea, possibly via hybrid N2O formation. Further, with just archaeal N2O production, we could balance high-resolution estimates of sea-to-air N2O exchange. Hence, a significant source of N2O, previously described as leakage from bacterial ammonium oxidation, is better described by low-oxygen archaeal production at the oxygen minimum zone's margins.

Geochemical evidence for enhanced preservation of organic matter in the oxygen minimum zone of the continental margin of northern California during the Late Pleistocene

USGS Publications Warehouse

Dean, Walter E.; Gardner, James V.; Anderson, Roger Y.

1994-01-01

The present upper water mass of the northeastern Pacific Ocean off California has a well-developed oxygen minimum zone between 600 and 1200 m wherein concentrations of dissolved oxygen are less than 0.5 mL/L. Even at such low concentrations of dissolved oxygen, benthic burrowing organisms are abundant enough to thoroughly bioturbate the surface and near-surface sediments. These macro organisms, together with micro organisms, also consume large quantities of organic carbon produced by large seasonal stocks of plankton in the overlying surface waters, which are supported by high concentrations of nutrients within the California Current upwelling system. In contrast to modern conditions of bioturbation, laminated sediments are preserved in upper Pleistocene sections of cores collected on the continental slope at water depths within the present oxygen minimum zone from at least as far north as the California-Oregon border and as far south as Point Conception. Comparison of sediment components in the laminae with those delivered to sediment traps as pelagic marine “snow” demonstrates that the dark-light lamination couplets are indeed annual (varves). These upper Pleistocene varved sediments contain more abundant lipid-rich “sapropelic” (type II) organic matter than the overlying bioturbated, oxidized Holocene sediments. The baseline of stable carbon isotopic composition of the organic matter in these slope cores does not change with time, indicating that the higher concentrations of type II organic matter in the varved sediments represent better preservation of organic matter rather than any change in the source of organic matter.

A 22,000 year record of changing redox conditions from the Peruvian Oxygen Minimum Zone (OMZ): benthic foraminifera approach

NASA Astrophysics Data System (ADS)

Erdem, Z.; Schönfeld, J.; Glock, N.

2015-12-01

Benthic foraminifera have been used as proxies for the prevailing conditions at the sediment-water interface. Their distribution patterns are thought to facilitate reconstruction of past environmental conditions. Variations of bottom water oxygenation can be traced by the downcore distribution of benthic foraminifera and some of their morphological characters. Being one of the strongest and most pronounced OMZs in today's world oceans, the Peruvian OMZ is a key area to study such variations in relation with changing climate. Spatial changes or an extension of the OMZ through time and space are investigated using sediment cores from the lower OMZ boundary. We focus on time intervals Late Holocene, Early Holocene, Bølling Allerød, Heinrich-Stadial 1 and Last Glacial Maximum (LGM) to investigate changes in bottom-water oxygen and redox conditions. The recent distributions of benthic foraminiferal assemblages provide background data for an interpretation of the past conditions. Living benthic foraminiferal faunas from the Peruvian margin are structured with the prevailing bottom-water oxygen concentrations today (Mallon et al., 2012). Downcore distribution of benthic foraminiferal assemblages showed fluctuations in the abundance of the indicator species depicting variations and a decreasing trend in bottom water oxygen conditions since the LGM. In addition, changes in bottom-water oxygen and nitrate concentrations are reconstructed for the same time intervals by the pore density in tests of Planulina limbata and Bolivina spissa (Glock et al., 2011), respectively. The pore densities also indicate a trend of higher oxygen and nitrate concentrations in the LGM compared to the Holocene. Combination of both proxies provide information on past bottom-water conditions and changes of oxygen concentrations for the Peruvian margin. Glock et al., 2011: Environmental influences on the pore density of Bolivina spissa (Cushman), Journal of Foraminiferal Research, v. 41, no. 1, p. 22-32. Mallon et al., 2012: The response of benthic foraminifera to low-oxygen conditions of the Peruvian oxygen minimum zone, in ANOXIA, pp.305-322.

Benthic foraminiferal trace metal uptake: a field calibration from the Arabia Sea Oxygen Minimum Zone

NASA Astrophysics Data System (ADS)

Koho, K. A.; Reichart, G.-J.

2012-04-01

The Arabian Sea Oxygen Minimum Zone (OMZ) is sustained by high surface water productivity and relatively weak mid-depth water column ventilation. High primary productivity drives high respiration rates in the water column, causing severe oxygen depletion between ±150-1400 m water depths, with the oxygen concentrations falling below 2 μM in the core of the OMZ. Living (rose Bengal stained) benthic foraminifera were collected at 10-stations, covering a large bottom water oxygen concentration gradient from the Murray Ridge. This sub-marine ridge is located in the open marine environment of the Arabian Sea and thus not affected by large gradients in surface water productivity such as encountered at the continental margins. Since these sites thus receive similar organic fluxes, but are bathed in bottom waters with contrasting oxygen concentrations, pore water profiles mainly reflect bottom water oxygenation. The study sites represent a natural laboratory to investigate the impact of bottom water chemistry on trace metal incorporation in benthic foraminifera. Trace metal analyses by laser ablation ICP-MS allows detailed single chamber measurements of trace metal content, which can be related to in situ pore water geochemistry. Focus of this study is on redox sensitive trace metal (e.g. Mn, U) incorporation into foraminiferal test calcite in relation to pore water oxygen and carbonate chemistry.

Pairing Quaternary paleoecology and modern ROV exploration to produce novel reconstructions of marine ecosystem responses to millennial-scale climate change

NASA Astrophysics Data System (ADS)

Myhre, S. E.; Pak, D. K.; Borreggine, M. J.; Hill, T. M.; Kennett, J.; Nicholson, C.; Deutsch, C. A.

2017-12-01

One of the most interesting problems for 21st Century marine ecology is understanding the potential physical, chemical, and biological scale of future climate-forced oceanographic changes. These fundamental questions can be informed through the examination of micro- and macrofauna from Quaternary sedimentary sequences, combined with modern observations of continental margin ecosystems. Here we examine Remotely Operated Vehicle (ROV) exploratory videos and sedimentary push cores, to identify biological assemblages, including mollusc, echinoderm, ostracod, and foraminifera density, diversity, and community structure from Santa Barbara Basin in the California Borderland. ROV explorations, from 380-500 meters below sea level (mbsl), describe the zonation of benthic fauna and the distribution of chemosynthetic trophic webs, which are consequences of gradations in the oxygen minimum zone and the ventilating sill depth (475 mbsl). Such observations reveal the modern vertical distribution of chemosynthetic bacterial communities and shallower, diverse communities associated with detrital food webs. Biological assemblages from 16.1-3.4 ka (from core MV0811-15JC, collected at 418 mbsl) produce a suite of paleoceanographic indicators, such as dissolved oxygen concentrations (foraminifera), chemosynthetic trophic webs (molluscs), and water masses (ostracods). These assemblages demonstrate how continental margin ecosystems reorganize vertically (through the water column) and geographically through climate events, for example through the loss of cryophilic species, the ephemeral occurrence of chemosynthetic communities, and the trace fossil evidence (through predation scarring on mollusc shells) of higher trophic web interactions. Together with ROV seafloor observations, these communities can reconstruct step-by-step vertical changes in the zonation of the continental margin, and can identify intervals of zonation change in relation to both Santa Barbara Basin ventilation and the regional California Borderland oxygen minimum zone.

Late Quaternary changes in intermediate water oxygenation and oxygen minimum zone, northern Japan: A benthic foraminiferal perspective

NASA Astrophysics Data System (ADS)

Shibahara, Akihiko; Ohkushi, Ken'ichi; Kennett, James P.; Ikehara, Ken

2007-09-01

A strong oxygen minimum zone (OMZ) currently exists at upper intermediate water depths on the northern Japanese margin, NW Pacific. The OMZ results largely from a combination of high surface water productivity and poor ventilation of upper intermediate waters. We investigated late Quaternary history (last 34 kyr) of ocean floor oxygenation and the OMZ using quantitative changes in benthic foraminiferal assemblages in three sediment cores taken from the continental slope off Shimokita Peninsula and Tokachi, northern Japan, at water depths between 975 and 1363 m. These cores are well located within the present-day OMZ, a region of high surface water productivity, and in close proximity to the source region of North Pacific Intermediate Water. Late Quaternary benthic foraminiferal assemblages experienced major changes in response to changes in dissolved oxygen concentration in ocean floor sediments. Foraminiferal assemblages are interpreted to represent three main groups representing oxic, suboxic, and dysoxic conditions. Assemblage changes in all three cores and hence in bottom water oxygenation coincided with late Quaternary climatic episodes, similar to that known for the southern California margin. These episodes, in turn, are correlated with orbital and millennial climate episodes in the Greenland ice core including the last glacial episode, Bølling-Ållerød (B/A), Younger Dryas, Preboreal (earliest Holocene), early Holocene, and late Holocene. The lowest oxygen conditions, marked by dysoxic taxa and laminated sediments in one core, occurred during the B/A and the Preboreal intervals. Suboxic taxa dominated mainly during the last glacial, the Younger Dryas, and most of the Holocene. Dysoxic conditions during the B/A and Preboreal intervals in this region were possibly caused by high surface water productivity at times of reduced intermediate ventilation in the northwestern Pacific. Remarkable similarities are evident in the late Quaternary sequence of benthic foraminiferal assemblage change between the two very distant continental margins of northern Japan and southern California. The oscillations in OMZ strength, reflected by these faunal changes, were widespread and apparently synchronous over wide areas of the North Pacific, reflecting broad changes in intermediate water ventilation and surface ocean productivity closely linked with late Quaternary climate change on millennial and orbital timescales.

Fish Ecology and Evolution in the World's Oxygen Minimum Zones and Implications of Ocean Deoxygenation.

PubMed

Gallo, N D; Levin, L A

Oxygen minimum zones (OMZs) and oxygen limited zones (OLZs) are important oceanographic features in the Pacific, Atlantic, and Indian Ocean, and are characterized by hypoxic conditions that are physiologically challenging for demersal fish. Thickness, depth of the upper boundary, minimum oxygen levels, local temperatures, and diurnal, seasonal, and interannual oxycline variability differ regionally, with the thickest and shallowest OMZs occurring in the subtropics and tropics. Although most fish are not hypoxia-tolerant, at least 77 demersal fish species from 16 orders have evolved physiological, behavioural, and morphological adaptations that allow them to live under the severely hypoxic, hypercapnic, and at times sulphidic conditions found in OMZs. Tolerance to OMZ conditions has evolved multiple times in multiple groups with no single fish family or genus exploiting all OMZs globally. Severely hypoxic conditions in OMZs lead to decreased demersal fish diversity, but fish density trends are variable and dependent on region-specific thresholds. Some OMZ-adapted fish species are more hypoxia-tolerant than most megafaunal invertebrates and are present even when most invertebrates are excluded. Expansions and contractions of OMZs in the past have affected fish evolution and diversity. Current patterns of ocean warming are leading to ocean deoxygenation, causing the expansion and shoaling of OMZs, which is expected to decrease demersal fish diversity and alter trophic pathways on affected margins. Habitat compression is expected for hypoxia-intolerant species, causing increased susceptibility to overfishing for fisheries species. Demersal fisheries are likely to be negatively impacted overall by the expansion of OMZs in a warming world. © 2016 Elsevier Ltd. All rights reserved.

Effects of bottom water dissolved oxygen variability on copper and lead fractionation in the sediments across the oxygen minimum zone, western continental margin of India.

PubMed

Chakraborty, Parthasarathi; Chakraborty, Sucharita; Jayachandran, Saranya; Madan, Ritu; Sarkar, Arindam; Linsy, P; Nath, B Nagender

2016-10-01

This study describes the effect of varying bottom-water oxygen concentration on geochemical fractionation (operational speciation) of Cu and Pb in the underneath sediments across the oxygen minimum zone (Arabian Sea) in the west coast of India. Both, Cu and Pb were redistributed among the different binding phases of the sediments with changing dissolved oxygen level (from oxic to hypoxic and close to suboxic) in the bottom water. The average lability of Cu-sediment complexes gradually decreased (i.e., stability increased) with the decreasing dissolved oxygen concentrations of the bottom water. Decreasing bottom-water oxygen concentration increased Cu association with sedimentary organic matter. However, Pb association with Fe/Mn-oxyhydroxide phases in the sediments gradually decreased with the decreasing dissolved oxygen concentration of the overlying bottom water (due to dissolution of Fe/Mn oxyhydroxide phase). The lability of Pb-sediment complexes increased with the decreasing bottom-water oxygen concentration. This study suggests that bottom-water oxygen concentration is one of the key factors governing stability and lability of Cu and Pb complexes in the underneath sediment. Sedimentary organic matter and Fe/Mn oxyhydroxide binding phases were the major hosting phases for Cu and Pb respectively in the study area. Increasing lability of Pb-complexes in bottom sediments may lead to positive benthic fluxes of Pb at low oxygen environment. Copyright © 2016 Elsevier B.V. All rights reserved.

Implications of Deoxygenation and Acidification for Deep Sea Urchins in Southern California

NASA Astrophysics Data System (ADS)

Sato, Kirk Nicholas Suda

Implications of multiple climate drivers for sea urchins were investigated across a spectrum of biological organization ranging from the urchin guild scale, to individual life history traits, to the geochemistry, material properties and porosity of sea urchin calcium carbonate skeletal tests. Using pink fragile sea urchins (Strongylocentrotus fragilis) on the southern California upwelling margin as a model species, links between biological traits and environmental parameters in nature across multiple spatial and temporal scales revealed correlations with dissolved oxygen (DO), pH, and temperature. Temporal trends in sea urchin populations assessed from trawl surveys conducted in southern California over the last 20 years (1994-2013) revealed changes in deep-sea urchin densities and depth distributions that coincide with trends in DO and pH on multidecadal and interdecadal (El Nino Southern Oscillation) time scales. The shallower urchin species ( Lytechinus pictus) decreased in density in the upper 200 m by 80%, and the deeper S. fragilis increased in density by ˜300%, providing the first evidence of habitat compression and expansion in sea urchin populations associated with secular and interdecadal variability in DO and pH. In this context, marketable food quality properties of the roe were compared between S. fragilis and the currently fished California red urchin, Mesocentrotus franciscanus, to assess the feasibility of developing a climate change-tolerant future S. fragilis trap fishery. Although roe color, texture, and resilience were similar between the two species, smaller and softer S. fragilis roe suggest it may only supplement, but not replace M. franciscanus in future fisheries. In comparisons across natural margin depth and climate gradients from 100-1100 m, S. fragilis exhibited reduced gonad production, smaller, weaker and more porous calcified tests in the Oxygen Minimum Zone (DO < 22 mumol kg-1) and pH Minimum Zone (in situ pHTotal <7.57) than those collected from less acidic and more oxygenated shelf and oxygen limiting zones above and the lower OMZ below. Thus S. fragilis may be more vulnerable to crushing predators if low oxygen, low pH OMZs continue to shoal and intensify in the future. This research highlights the utility of quantifying natural variability in species' traits along natural gradients on upwelling margins to improve understanding about potential impacts of changing climate drivers.

Nano- and Macroscale Responses of the Deep Pink Sea Urchin, Strongylocentrotus fragilis, to Multiple Stressors Associated with the Oxygen Minimum Zone

NASA Astrophysics Data System (ADS)

Sato, K.; Jung, J. Y.; Levin, L. A.

2016-02-01

The rapid pace of deoxygenation and ocean acidification associated with anthropogenic climate change on upwelling margins will have differing effects on marine species from the population level down to the nanoscale. Driven by the understudied effects of climate change in the deep sea, we address the question, how will dominant echinoid urchins respond to future changes in multiple stressors (i.e. ocean acidification, deoxygenation, and shoaling of hypoxic water and calcium carbonate saturation horizons) on the southern California continental slope? Samples of the sea urchin, Strongylocentrotus fragilis, were collected along gradients of multiple hydrographic variables and analyzed for phenotypic variation with respect to multiple climate change stressors (oxygen, pH, and temperature). We compare fitness traits of S. fragilis collected along the continental slope and through the Oxygen Minimum Zone (OMZ), which include growth rate, morphology, and reproductive output, in addition to nanoscale structural and biomechanical test properties. Our results indicate that growth rate of S. fragilis is directly correlated with dissolved oxygen and pH, but not depth or temperature. Reproductive output, as measured by a standard gonad index, was found to be sensitive at the OMZ core (pH 7.40; O2 0.25 mL/L), which suggests a nonlinear response to chemical stressors. Preliminary analysis of mineral density in test pieces imaged using micro- and nano- computed tomography indicates exposure to conditions in the OMZ reduces calcification. This improved understanding of how continental margin urchins differ along natural physicochemical gradients will provide modern-day insight into the threshold tolerances of species to multiple stressors and will help guide future manipulation experiments as well as fisheries and spatial management.

Low Oxygen and Ocean Acidification on the Vancouver Island Shelf

NASA Astrophysics Data System (ADS)

Bianucci, L.; Denman, K.

2008-12-01

In the recent years hypoxic events have been observed along the west coast of North America (off Oregon and California). Although a common cause of coastal hypoxia is usually anthropogenic eutrophication, in these upwelling regions the advection of oxygen-depleted waters from offshore is a key mechanism. Moreover, the high productivity typical of these margins generates a large flux of sinking particular organic matter. The remineralization of this matter below the euphotic zone produces an elevated consumption of oxygen. When concentrations become lower than certain threshold, hypoxia leads to a major change in the ecosystem and the affected areas are called 'dead zones'. Furthermore, the two processes that drive oxygen levels down (physical upwelling and biological demand) also increase dissolved inorganic carbon in the shelf, which leads to a pH reduction. Ocean acidification and hypoxia can severely affect ecosystems, and the links between these phenomena have not been explored. This presentation will discuss a model study of the carbon and oxygen coupling on the Vancouver Island shelf, with focus on the connection between acidification and hypoxia. Moreover, the role of biology versus physics will be investigated. This region comprises the northern end of the wind-driven upwelling margin off western North America, where low oxygen events have not been extensively studied. However, the proximity to an Oxygen Minimum Zone offshore and the observed decline of oxygen in the Northeast Pacific turns this shelf into a potential candidate to suffer from low-oxygen events. The model used is the Regional Ocean Modeling System (ROMS) in a quasi-2D configuration of the shelf (across-shore section with uniform properties alongshore). The biogeochemical model has carbon, oxygen, and nitrogen as state variables, and includes cycling of dissolved organic matter. Carbon and oxygen cycles are coupled through ecosystem processes such as photosynthesis and remineralization, while they are decoupled by other processes (e.g., nitrification and denitrification).

Benthic biological and biogeochemical patterns and processes across an oxygen minimum zone (Pakistan margin, NE Arabian Sea)

NASA Astrophysics Data System (ADS)

Cowie, Gregory L.; Levin, Lisa A.

2009-03-01

Oxygen minimum zones (OMZs) impinging on continental margins present sharp gradients ideal for testing environmental factors thought to influence C cycling and other benthic processes, and for identifying the roles that biota play in these processes. Here we introduce the objectives and initial results of a multinational research program designed to address the influences of water depth, the OMZ (˜150-1300 m), and organic matter (OM) availability on benthic communities and processes across the Pakistan Margin of the Arabian Sea. Hydrologic, sediment, and faunal characterizations were combined with in-situ and shipboard experiments to quantify and compare biogeochemical processes and fluxes, OM burial efficiency, and the contributions of benthic communities, across the OMZ. In this introductory paper, we briefly review previous related work in the Arabian Sea, building the rationale for integrative biogeochemical and ecological process studies. This is followed by a summary of individual volume contributions and a brief synthesis of results. Five primary stations were studied, at 140, 300, 940, 1200 and 1850 m water depth, with sampling in March-May (intermonsoon) and August-October (late-to-postmonsoon) 2003. Taken together, the contributed papers demonstrate distinct cross-margin gradients, not only in oxygenation and sediment OM content, but in benthic community structure and function, including microbial processes, the extent of bioturbation, and faunal roles in C cycling. Hydrographic studies demonstrated changes in the intensity and extent of the OMZ during the SW monsoon, with a shoaling of the upper OMZ boundary that engulfed the previously oxygenated 140-m site. Oxygen profiling and microbial process rate determinations demonstrated dramatic differences in oxygen penetration and consumption across the margin, and in the relative importance of anaerobic processes, but surprisingly little seasonal change. A broad maximum in sediment OM content occurred on the upper slope, roughly coincident with the OMZ; but the otherwise poor correlation with bottom-water oxygen concentrations indicated that other factors are important in determining sediment OM distributions. Downcore profiles generally showed little clear evidence of in-situ OM alteration, and there was little sign of OM enrichment resulting from the southwest monsoon in sediments collected in the late-to-postmonsoon sampling. This is interpreted to be due to rapid cycling of labile OM. Organic geochemical studies confirmed that sediment OM is overwhelmingly of marine origin across the margin, but also that it is heavily altered, with only small changes in degradation state across the OMZ. More negative stable C isotopic compositions in surficial sediments at hypoxic sites within the OMZ core are attributed to a chemosynthetic bacterial imprint. Dramatic changes in benthic community structure occurred across the lower OMZ transition, apparently related to OM availability and quality as well as to DO concentrations. High-resolution sampling, biomarkers and isotope tracer studies revealed that oxygen availability appears to exert threshold-type controls on benthic community structure and early faunal C processing. Biomarker studies also provided evidence of faunal influence on sediment OM composition. Together, the results offer strong evidence that benthic fauna at sites across the margin play important roles in the early cycling of sediment OM through differential feeding and bioturbation activities.

Living (Rose Bengal stained) benthic foraminiferal faunas along a strong bottom-water oxygen gradient on the Indian margin (Arabian Sea)

NASA Astrophysics Data System (ADS)

Caulle, C.; Mojtahid, M.; Gooday, A. J.; Jorissen, F. J.; Kitazato, H.

2015-02-01

Rose Bengal stained foraminiferal assemblages were analysed along a five-station bathymetric transect across the core and the lower part of the oxygen minimum zone (OMZ) on the Indian margin of the Arabian Sea. Sediment cores were collected using the manned submersible Shinkai 6500 during RV Yokosuka cruise YK08-11 in the post-monsoon season (October 2008) at water depths ranging from 535 to 2000 m, along a gradient from almost anoxic to well-oxygenated (0.3 to 108 μM) bottom waters. Stained foraminiferal densities were very high in the OMZ core (535 m) and decreased with depth. The faunas were dominated (40-80%) by non-calcareous taxa at all stations. These were mainly species of Reophax and Lagenammina but also included delicate monothalamous taxa (organic-walled "allogromiids", agglutinated saccamminids, psammosphaerids and tubular forms). These new data from the Indian margin are compared to previous studies from the Murray Ridge, the Pakistan margin and the Oman margin. The fact that similar species were found at sites with comparable bottom-water oxygen concentrations but with very different surface water productivity suggests that, within the strongly developed Arabian Sea OMZ, bottom-water oxygen concentration, and not the organic flux to the sea floor, is the main factor controlling the species composition of the foraminiferal communities. Several foraminiferal species (e.g. Praeglobobulimina sp. 1, Ammodiscus sp. 1, Bolivina aff. dilatata) were confined to the core of the OMZ and are presently known only from the Arabian Sea. Because of their association with extremely low-oxygen concentration, these species may prove to be good indicators of past OMZ variability in the Arabian Sea.

Early Cambrian oxygen minimum zone-like conditions at Chengjiang

NASA Astrophysics Data System (ADS)

Hammarlund, Emma U.; Gaines, Robert R.; Prokopenko, Maria G.; Qi, Changshi; Hou, Xian-Guang; Canfield, Donald E.

2017-10-01

The early Cambrian succession at Chengjiang contains the most diverse Cambrian fossil assemblage yet described, and contributes significantly to our understanding of the diversification of metazoans in the Cambrian ;explosion;. The Cambrian Period occupies a transitional episode of global ocean chemistry, following the oxygenation of the surface ocean and of shallow marine environments during the Ediacaran Period, but prior to the establishment of a predominantly oxygenated deep ocean in the mid-Paleozoic. Despite recent attention, a detailed understanding of the chemical conditions that prevailed in early Cambrian marine settings and the relationship of those conditions to early metazoan ecosystems is still emerging. Here, we report multi-proxy geochemical data from two drill cores through the early Cambrian (Series 2) Yu'anshan Formation of Yunnan, China. Results reveal dynamic water-column chemistry within the succession, which progressively shifted from euxinic to oxic conditions during deposition of the Yu'anshan Formation. The Chengjiang biota occurs in strata that appear to have been deposited under an oxygen-depleted water column that may have supported denitrification, as in modern oxygen-minimum zones. The oxygenated benthic environments in which the Chengjiang biota thrived were proximal to, but sharply separated from, the open ocean by a persistent anoxic water mass that occupied a portion of the outer shelf. Oxygen depletion in the lower water column developed dynamically in response to nutrient availability and possibly at lower thresholds of productivity due to lower atmospheric oxygen concentrations in Cambrian. These findings suggest that the frequent development of oxygen-limiting conditions in continental margin settings provided an environmental barrier that may have affected biogeographic, ecological and evolutionary development of early metazoan communities.

Microbial diversity from chlorophyll maximum, oxygen minimum and bottom zones in the southwestern Atlantic Ocean

NASA Astrophysics Data System (ADS)

Medina-Silva, Renata; de Oliveira, Rafael R.; Pivel, Maria A. G.; Borges, Luiz G. A.; Simão, Taiz L. L.; Pereira, Leandro M.; Trindade, Fernanda J.; Augustin, Adolpho H.; Valdez, Fernanda P.; Eizirik, Eduardo; Utz, Laura R. P.; Groposo, Claudia; Miller, Dennis J.; Viana, Adriano R.; Ketzer, João M. M.; Giongo, Adriana

2018-02-01

Conspicuous physicochemical vertical stratification in the deep sea is one of the main forces driving microbial diversity in the oceans. Oxygen and sunlight availability are key factors promoting microbial diversity throughout the water column. Ocean currents also play a major role in the physicochemical stratification, carrying oxygen down to deeper zones as well as moving deeper water masses up towards shallower depths. Water samples within a 50-km radius in a pockmark location of the southwestern Atlantic Ocean were collected and the prokaryotic communities from different water depths - chlorophyll maximum, oxygen minimum and deep-sea bottom (down to 1355 m) - were described. At phylum level, Proteobacteria were the most frequent in all water depths, Cyanobacteria were statistically more frequent in chlorophyll maximum zone, while Thaumarchaeota were significantly more abundant in both oxygen minimum and bottom waters. The most frequent microorganism in the chlorophyll maximum and oxygen minimum zones was a Pelagibacteraceae operational taxonomic unit (OTU). At the bottom, the most abundant genus was the archaeon Nitrosopumilus. Beta diversity analysis of the 16S rRNA gene sequencing data uncovered in this study shows high spatial heterogeneity among water zones communities. Our data brings important contribution for the characterisation of oceanic microbial diversity, as it consists of the first description of prokaryotic communities occurring in different oceanic water zones in the southwestern Atlantic Ocean.

Modelling Ecosystem Dynamics of the Oxygen Minimum Zones in the Angola Gyre and the Northern Benguela Upwelling System.

NASA Astrophysics Data System (ADS)

Schmidt, M.; Eggert, A.

2016-02-01

The Angola Gyre and the Northern Benguela Upwelling System are two major oxygen minimum zones (OMZ) of different kind connected by the system of African Eastern Boundary Currents. We discuss results from a 3-dimensional coupled biogeochemical model covering both oxygen-deficient systems. The biogeochemical model component comprises trophic levels up to zooplankton. Physiological properties of organisms are parameterized from field data gained mainly in the course of the project "Geochemistry and Ecology of the Namibian Upwelling System" (GENUS). The challenge of the modelling effort is the different nature of both systems. The Angola Gyre, located in a "shadow zone" of the tropical Atlantic, has a low productivity and little ventilation, hence a long residence time of water masses. In the northern Benguela Upwelling System, trade winds drive an intermittent, but permanent nutrient supply into the euphotic zone which fuels a high coastal productivity, large particle export and high oxygen consumption from dissimilatory processes. In addition to the local processes, oxygen-deficient water formed in the Angola Gyre is one of the source water masses of the poleward undercurrent, which feeds oxygen depleted water into the Benguela system. In order to simulate the oxygen distribution in the Benguela system, both physical transport as well as local biological processes need to be carefully adjusted in the model. The focus of the analysis is on the time scale and the relative contribution of the different oxygen related processes to the oxygen budgets in both the oxygen minimum zones. Although these are very different in both the OMZ, the model is found as suitable to produce oxygen minimum zones comparable with observations in the Benguela and the Angola Gyre as well. Variability of the oxygen concentration in the Angola Gyre depends strongly on organismic oxygen consumption, whereas the variability of the oxygen concentration on the Namibian shelf is governed mostly by pole-ward advection of tropical water masses.

Living (Rose-Bengal-stained) benthic foraminiferal faunas along a strong bottom-water oxygen gradient on the Indian margin (Arabian Sea)

NASA Astrophysics Data System (ADS)

Caulle, C.; Mojtahid, M.; Gooday, A. J.; Jorissen, F. J.; Kitazato, H.

2015-08-01

Rose-Bengal-stained foraminiferal assemblages (> 150 μm) were analysed along a five-station bathymetric transect across the core and the lower part of the oxygen minimum zone (OMZ) on the Indian margin of the Arabian Sea. Sediment cores were collected using the manned submersible Shinkai 6500 during the RV Yokosuka cruise YK08-11 in the post-monsoon season (October 2008) at water depths ranging from 535 to 2000 m, along a gradient from almost anoxic to well-oxygenated (0.3 to 108 μM) bottom waters. Stained benthic foraminifera were investigated from two different size fractions (150-300 μm and > 300 μm). Stained foraminiferal densities were very high in the core of the OMZ (at 535 and 649 m) and decreased at deeper sites. The faunas (> 150 μm) were dominated (40-80 %) by non-calcareous taxa at all stations. These were mainly species of Reophax and Lagenammina but also included delicate monothalamous taxa (organic-walled "allogromiids", agglutinated saccamminids, psammosphaerids and tubular forms). These new data from the Indian margin are compared to previous studies from the Murray Ridge, the Pakistan margin and the Oman margin. The fact that similar species were found at sites with comparable bottom-water oxygen concentrations but with very different surface water productivity suggests that, within the strongly developed Arabian Sea OMZ, bottom-water oxygen concentration, and not the organic flux to the sea floor, is the main factor controlling the species composition of the foraminiferal communities. Several foraminiferal species (e.g. Praeglobobulimina sp. 1, Ammodiscus sp. 1, Bolivina aff. dilatata) were confined to the core of the OMZ. These species are presently known only from the Arabian Sea. Because of their association with extremely low oxygen concentrations, these species may be good markers for very low oxygen concentrations, and could be used to reconstruct past OMZ variability in the Arabian Sea.

Performance of an airborne imaging 92/183 GHz radiometer during the Bering Sea Marginal Ice Zone Experiment (MIZEX-WEST)

NASA Technical Reports Server (NTRS)

Gagliano, J. A.; Mcsheehy, J. J.; Cavalieri, D. J.

1983-01-01

An airborne imaging 92/183 GHz radiometer was recently flown onboard NASA's Convair 990 research aircraft during the February 1983 Bering Sea Marginal Ice Zone Experiment (MIZEX-WEST). The 92 GHz portion of the radiometer was used to gather ice signature data and to generate real-time millimeter wave images of the marginal ice zone. Dry atmospheric conditions in the Arctic resulted in good surface ice signature data for the 183 GHz double sideband (DSB) channel situated + or - 8.75 GHz away from the water vapor absorption line. The radiometer's beam scanner imaged the marginal ice zone over a + or - 45 degrees swath angle about the aircraft nadir position. The aircraft altitude was 30,000 feet (9.20 km) maximum and 3,000 feet (0.92 km) minimum during the various data runs. Calculations of the minimum detectable target (ice) size for the radiometer as a function of aircraft altitude were performed. In addition, the change in the atmospheric attenuation at 92 GHz under varying weather conditions was incorporated into the target size calculations. A radiometric image of surface ice at 92 GHz in the marginal ice zone is included.

Intensification of the Northeast Pacific oxygen minimum zone during the Bölling-Alleröd warm period

USGS Publications Warehouse

Zheng, Yen; van Geen, Alexander; Anderson, Robert F.; Gardner, James V.; Dean, Walter E.

2000-01-01

Although climate records from several locations around the world show nearly synchronous and abrupt changes, the nature of the inferred teleconnection is still poorly understood. On the basis of preserved laminations and molybdenum enrichments in open margin sediments we demonstrate that the oxygen content of northeast Pacific waters at 800 m depth during the Bölling-Alleröd warm period (15–13 kyr) was greatly reduced. Existing oxygen isotopic records of benthic and planktonic foraminifera suggest that this was probably due to suppressed ventilation at higher latitudes of the North Pacific. Comparison with ventilation records for the North Atlantic indicates an antiphased pattern of convection relative to the North Pacific over the past 22 kyr, perhaps due to variations in water vapor transport across Central America.

Bacterioplankton Populations within the Oxygen Minimum Zone of the Sargasso Sea

NASA Astrophysics Data System (ADS)

Schuler, G.; Parsons, R. J.; Johnson, R. J.

2016-02-01

Oxygen minimum zones are present throughout the world's oceans, and occur at depths between 200 to 1000m. Heterotrophic bacteria reduce the dissolved oxygen within this layer through respiration, while metabolizing falling particles. This report studied the bacterioplankton in the oxygen minimum zone at the BATS (Bermuda Atlantic Times-series Study) site from July 2014 until November 2014. Total bacterioplankton populations were enumerated through direct counts. In the transitional zone (400m-800m) of the oxygen minimum zone, a secondary bacterioplankton peak formed. This study used FISH (Fluorescent in situ hybridization) and CARD-FISH (Catalyzed Reporter Deposition-Fluorescent in situ hybridization) to enumerate specific bacterial and archaeal taxa. Crenarchaeota (including Thaumarchaeota) increased in abundance within the upper oxycline. Thaumarchaeota have the ammonia monooxygenase gene that oxidizes ammonium into nitrite in low oxygen conditions. Amplification of the amoA gene confirmed that ammonia oxidizing archaea (AOA) were present within the OMZ. Using Terminal Restriction Fragment Length Polymorphism (T-RFLP), the bacterial community structure showed high similarity based depth zones (0-80m, 160-600m, and 800-4500m). Niskin experiments determined that water collected at 800m had an exponential increase in bacterioplankton over time. While experimental design did not allow for oxygen levels to be maintained, the bacterioplankton community was predominantly bacteria with eubacteria positive cells making up 89.3% of the of the total bacterioplankton community by day 34. Improvements to the experimental design are required to determine which specific bacterial taxa caused this increase at 800m. This study suggests that there are factors other than oxygen influencing bacterioplankton populations at the BATS site, and more analysis is needed once the BATS data is available to determine the key drivers of bacterioplankton dynamics within the BATS OMZ.

Aerobic Microbial Respiration In Oceanic Oxygen Minimum Zones.

PubMed

Kalvelage, Tim; Lavik, Gaute; Jensen, Marlene M; Revsbech, Niels Peter; Löscher, Carolin; Schunck, Harald; Desai, Dhwani K; Hauss, Helena; Kiko, Rainer; Holtappels, Moritz; LaRoche, Julie; Schmitz, Ruth A; Graco, Michelle I; Kuypers, Marcel M M

2015-01-01

Oxygen minimum zones are major sites of fixed nitrogen loss in the ocean. Recent studies have highlighted the importance of anaerobic ammonium oxidation, anammox, in pelagic nitrogen removal. Sources of ammonium for the anammox reaction, however, remain controversial, as heterotrophic denitrification and alternative anaerobic pathways of organic matter remineralization cannot account for the ammonium requirements of reported anammox rates. Here, we explore the significance of microaerobic respiration as a source of ammonium during organic matter degradation in the oxygen-deficient waters off Namibia and Peru. Experiments with additions of double-labelled oxygen revealed high aerobic activity in the upper OMZs, likely controlled by surface organic matter export. Consistently observed oxygen consumption in samples retrieved throughout the lower OMZs hints at efficient exploitation of vertically and laterally advected, oxygenated waters in this zone by aerobic microorganisms. In accordance, metagenomic and metatranscriptomic analyses identified genes encoding for aerobic terminal oxidases and demonstrated their expression by diverse microbial communities, even in virtually anoxic waters. Our results suggest that microaerobic respiration is a major mode of organic matter remineralization and source of ammonium (~45-100%) in the upper oxygen minimum zones, and reconcile hitherto observed mismatches between ammonium producing and consuming processes therein.

Aerobic Microbial Respiration In Oceanic Oxygen Minimum Zones

PubMed Central

Kalvelage, Tim; Lavik, Gaute; Jensen, Marlene M.; Revsbech, Niels Peter; Löscher, Carolin; Schunck, Harald; Desai, Dhwani K.; Hauss, Helena; Kiko, Rainer; Holtappels, Moritz; LaRoche, Julie; Schmitz, Ruth A.; Graco, Michelle I.; Kuypers, Marcel M. M.

2015-01-01

Oxygen minimum zones are major sites of fixed nitrogen loss in the ocean. Recent studies have highlighted the importance of anaerobic ammonium oxidation, anammox, in pelagic nitrogen removal. Sources of ammonium for the anammox reaction, however, remain controversial, as heterotrophic denitrification and alternative anaerobic pathways of organic matter remineralization cannot account for the ammonium requirements of reported anammox rates. Here, we explore the significance of microaerobic respiration as a source of ammonium during organic matter degradation in the oxygen-deficient waters off Namibia and Peru. Experiments with additions of double-labelled oxygen revealed high aerobic activity in the upper OMZs, likely controlled by surface organic matter export. Consistently observed oxygen consumption in samples retrieved throughout the lower OMZs hints at efficient exploitation of vertically and laterally advected, oxygenated waters in this zone by aerobic microorganisms. In accordance, metagenomic and metatranscriptomic analyses identified genes encoding for aerobic terminal oxidases and demonstrated their expression by diverse microbial communities, even in virtually anoxic waters. Our results suggest that microaerobic respiration is a major mode of organic matter remineralization and source of ammonium (~45-100%) in the upper oxygen minimum zones, and reconcile hitherto observed mismatches between ammonium producing and consuming processes therein. PMID:26192623

Climate and Anthropogenic Controls of Coastal Deoxygenation on Interannual to Centennial Timescales

NASA Astrophysics Data System (ADS)

Wang, Yi; Hendy, Ingrid; Napier, Tiffany J.

2017-11-01

Understanding dissolved oxygen variability in the ocean is limited by the short duration of direct measurements; however, sedimentary oxidation-reduction reactions can provide context for modern observations. Here we use bulk sediment redox-sensitive metal enrichment factors (MoEF, ReEF, and UEF) and scanning X-ray fluorescence records to examine annual-scale sedimentary oxygen concentrations in the Santa Barbara Basin from the Industrial Revolution (Common Era 1850) to present. Enrichments are linked to measured bottom water oxygen concentrations after 1986. We reveal gradual intensification of the coastal oxygen minimum zone (OMZ) on the southern California margin coinciding with the twentieth century anthropogenic warming trend that leads to reduced oxygen solubility and greater stratification. High-frequency interannual oscillations become more prominent over the last three decades. These are attributed to local "flushing events" triggered by the transition from El Niño to La Niña conditions, which further amplify changes in the extratropical southern Californian OMZ.

Sedimentation across the central California oxygen minimum zone: an alternative coastal upwelling sequence.

USGS Publications Warehouse

Vercoutere, T.L.; Mullins, H.T.; McDougall, K.; Thompson, J.B.

1987-01-01

Distribution, abundance, and diversity of terrigenous, authigenous, and biogenous material provide evidence of the effect of bottom currents and oxygen minimum zone (OMZ) on continental slope sedimentation offshore central California. Three major OMZ facies are identified, along the upper and lower edges of OMZ and one at its core.-from Authors

Nitrate-dependent iron oxidation limits iron transport in anoxic ocean regions

NASA Astrophysics Data System (ADS)

Scholz, Florian; Löscher, Carolin R.; Fiskal, Annika; Sommer, Stefan; Hensen, Christian; Lomnitz, Ulrike; Wuttig, Kathrin; Göttlicher, Jörg; Kossel, Elke; Steininger, Ralph; Canfield, Donald E.

2016-11-01

Iron is an essential element for life on Earth and limits primary production in large parts of the ocean. Oxygen-free continental margin sediments represent an important source of bioavailable iron to the ocean, yet little of the iron released from the seabed reaches the productive sea surface. Even in the anoxic water of oxygen minimum zones, where iron solubility should be enhanced, most of the iron is rapidly re-precipitated. To constrain the mechanism(s) of iron removal in anoxic ocean regions we explored the sediment and water in the oxygen minimum zone off Peru. During our sampling campaign the water column featured two distinct redox boundaries separating oxic from nitrate-reducing (i.e., nitrogenous) water and nitrogenous from weakly sulfidic water. The sulfidic water mass in contact with the shelf sediment contained elevated iron concentrations >300 nM. At the boundary between sulfidic and nitrogenous conditions, iron concentrations dropped sharply to <20 nM coincident with a maximum in particulate iron concentration. Within the iron gradient, we found an increased expression of the key functional marker gene for nitrate reduction (narG). Part of this upregulation was related to the activity of known iron-oxidizing bacteria. Collectively, our data suggest that iron oxidation and removal is induced by nitrate-reducing microbes, either enzymatically through anaerobic iron oxidation or by providing nitrite for an abiotic reaction. Given the important role that iron plays in nitrogen fixation, photosynthesis and respiration, nitrate-dependent iron oxidation likely represents a key-link between the marine biogeochemical cycles of nitrogen, oxygen and carbon.

Simulated effects of southern hemispheric wind changes on the Pacific oxygen minimum zone

NASA Astrophysics Data System (ADS)

Getzlaff, Julia; Dietze, Heiner; Oschlies, Andreas

2016-01-01

A coupled ocean biogeochemistry-circulation model is used to investigate the impact of observed past and anticipated future wind changes in the Southern Hemisphere on the oxygen minimum zone in the tropical Pacific. We consider the industrial period until the end of the 21st century and distinguish effects due to a strengthening of the westerlies from effects of a southward shift of the westerlies that is accompanied by a poleward expansion of the tropical trade winds. Our model results show that a strengthening of the westerlies counteracts part of the warming-induced decline in the global marine oxygen inventory. A poleward shift of the trade-westerlies boundary, however, triggers a significant decrease of oxygen in the tropical oxygen minimum zone. In a business-as-usual CO2 emission scenario, the poleward shift of the trade-westerlies boundary and warming-induced increase in stratification contribute equally to the expansion of suboxic waters in the tropical Pacific.

Eastward shift and maintenance of Arabian Sea oxygen minimum zone: Understanding the paradox

NASA Astrophysics Data System (ADS)

Acharya, Shiba Shankar; Panigrahi, Mruganka K.

2016-09-01

The dominance of Oxygen Minimum Zone in the eastern part of the Arabian Sea (ASOMZ) instead of the more bio-productive and likely more oxygen consuming western part is the first part of the paradox. The sources of oxygen to the ASOMZ were evaluated through the distributions of different water masses using the extended optimum multiparameter (eOMP) analysis, whereas the sinks of oxygen were evaluated through the organic matter remineralization, using the apparent oxygen utilization (AOU). The contributions of major source waters to the Arabian Sea viz. Indian Deep water (dIDW), Indian Central water (ICW), Persian Gulf Water (PGW) and Red Sea Water (RSW) have been quantified through the eOMP analysis which shows that the PGW and RSW are significant for the eastward shift of ASOMZ instead of voluminous ICW and dIDW. The distribution of Net Primary Production (NPP) and AOU clearly suggest the transport of organic detritus from the highly productive western Arabian Sea to its eastern counterpart which adds to the eastward shifting of ASOMZ. A revised estimate of the seasonal variation of areal extent and volume occupied by ASOMZ through analysis of latest available data reveals a distinct intensification of ASOMZ by 30% and increase in its volume by 5% during the spring-summer transition. However, during this seasonal transition the productivity in the Arabian Sea shows 100% increase in mean NPP. This disparity between ASOMZ and monsoonal variation of productivity is the other part of the paradox, which has been constrained through apparent oxygen utilization, Net Primary Production along with a variation of core depths of source waters. This study reveals a subtle balance between the circulation of marginal oxygen-rich water masses from the western Arabian Sea and organic matter remineralization in the eastern Arabian Sea in different seasons that explains the maintenance of ASOMZ throughout the year.

Organic carbon accumulation and preservation in surface sediments on the Peru margin

USGS Publications Warehouse

Arthur, M.A.; Dean, W.E.; Laarkamp, K.

1998-01-01

Concentrations and characteristics of organic matter in surface sediments deposited under an intense oxygen-minimum zone on the Peru margin were studied in samples from deck-deployed box cores and push cores acquired by submersible on two transects spanning depths of 75 to 1000 m at 12??and 13.5??S. The source of organic matter to the seafloor in these areas is almost entirely marine material as confirmed by the narrow range of ??13C of organic carbon obtained in the present study (-20.3 to -21.6???; PDB) and the lack of any relationship between pyrolysis hydrogen index and carbon isotope composition. Organic carbon contents are highest (up to 16%) on the slope at depths between 75 and 350 m in sediments deposited under intermediate water masses with low dissolved oxygen concentrations (< 5 ??mol/kg). Even at these low concentrations of dissolved oxygen, however, the surface sediments that were recovered from these depths are dominantly unlaminated. Strong currents (up to 30 cm/s) associated with the poleward-flowing Peru Undercurrent were measured at depths between 160 and 300 m on both transects. The seafloor in this range of water depths is characterized by bedforms stabilized by bacterial mats, extensive authigenic mineral crusts, and (or) thick organic flocs. Constant advection of dissolved oxygen, although in low concentrations, active resuspension of surficial organic matter, activity of organisms, and transport of fine-grained sediment to and from more oxygenated zones all contribute to greater degradation and poorer initial preservation of organic matter than might be expected under oxygen-deficient conditions. Dissolved-oxygen concentrations ultimately may be the dominant affect on organic matter characteristics, but reworking of fine-grained sediment and organic matter by strong bottom currents and redeposition on the seafloor in areas of lower energy also exert important controls on organic carbon concentration and degree of oxidation in this region.

Uptake of algal carbon and the synthesis of an "essential" fatty acid by Uvigerina ex. gr. semiornata (Foraminifera) within the Pakistan margin oxygen minimum zone: evidence from fatty acid biomarker and 13C tracer experiments

NASA Astrophysics Data System (ADS)

Larkin, K. E.; Gooday, A. J.; Woulds, C.; Jeffreys, R.; Schwartz, M.; Cowie, G.; Whitcraft, C.; Levin, L.; Dick, J. R.; Pond, D. W.

2014-01-01

Foraminifera are an important component of benthic communities in oxygen depleted settings, where they potentially play a~significant role in the processing of organic matter. We tracked the uptake of a 13C-labeled algal food source into individual fatty acids in the benthic foraminiferal species, Uvigerina ex. gr. semiornata, from the Arabian Sea oxygen minimum zone (OMZ). The tracer experiments were conducted on the Pakistan Margin during the late/post monsoon period (August-October 2003). A monoculture of the diatom Thalassiosira weisflogii was 13C-labeled and used to simulate a pulse of phytoplankton in two complementary experiments. A lander system was used for in situ incubations at 140 m and for 2.5 days duration, whilst a laboratory incubation used an oxystat system to maintain ambient dissolved oxygen concentrations. These shipboard experiments were terminated after 5 days. Uptake of diatoms was rapid, with high incorporation of diatom fatty acids into foraminifera after ~2 days in both experiments. Ingestion of the diatom food source was indicated by the increase over time in the quantity of diatom biomarker fatty acids in the foraminifera and by the high percentage of 13C in many of the fatty acids present at the endpoint of both in~situ and laboratory-based experiments. These results indicate that U. ex. gr. semiornata rapidly ingested the diatom food source and that this foraminifera will play an important role in the short-term cycling of organic matter within this OMZ environment. The experiments also suggested that U. ex. gr. semiornata consumed non-labeled bacterial food items, particularly bacteria, and synthesised the polyunsaturated fatty acid 20:4(n-6) de novo. 20:4(n-6) is often abundant in benthic fauna yet its origins and function have remained unclear. This study demonstrates that U. ex. gr. semiornata is capable of de novo synthesis of this "essential fatty acid" and is potentially a major source of this dietary nutrient in benthic food webs.

Characterization and impact of "dead-zone" eddies in the tropical Northeast Atlantic Ocean

NASA Astrophysics Data System (ADS)

Schuette, Florian; Karstensen, Johannes; Krahmann, Gerd; Hauss, Helena; Fiedler, Björn; Brandt, Peter; Visbeck, Martin; Körtzinger, Arne

2016-04-01

Localized open-ocean low-oxygen dead-zones in the tropical Northeast Atlantic are recently discovered ocean features that can develop in dynamically isolated water masses within cyclonic eddies (CE) and anticyclonic modewater eddies (ACME). Analysis of a comprehensive oxygen dataset obtained from gliders, moorings, research vessels and Argo floats shows that eddies with low oxygen concentrations at 50-150 m depths can be found in surprisingly high numbers and in a large area (from about 5°N to 20°N, from the shelf at the eastern boundary to 30°W). Minimum oxygen concentrations of about 9 μmol/kg in CEs and close to anoxic concentrations (< 1 μmol/kg) in ACMEs were observed. In total, 495 profiles with oxygen concentrations below the minimum background concentration of 40 μmol/kg could be associated with 27 independent "dead-zone" eddies (10 CEs; 17 ACMEs). The low oxygen concentration right beneath the mixed layer has been attributed to the combination of high productivity in the surface waters of the eddies and the isolation of the eddies' cores. Indeed eddies of both types feature a cold sea surface temperature anomaly and enhanced chlorophyll concentrations in their center. The oxygen minimum is located in the eddy core beneath the mixed layer at around 80 m depth. The mean oxygen anomaly between 50 to 150 m depth for CEs (ACMEs) is -49 (-81) μmol/kg. Eddies south of 12°N carry weak hydrographic anomalies in their cores and seem to be generated in the open ocean away from the boundary. North of 12°N, eddies of both types carry anomalously low salinity water of South Atlantic Central Water origin from the eastern boundary upwelling region into the open ocean. This points to an eddy generation near the eastern boundary. A conservative estimate yields that around 5 dead-zone eddies (4 CEs; 1 ACME) per year entering the area north of 12°N between the Cap Verde Islands and 19°W. The associated contribution to the oxygen budget of the shallow oxygen minimum zone in that area is about -10.3 (-3.0) μmol/kg/yr for CEs (ACMEs). The consumption within these eddies represents an essential part of the total consumption in the open tropical Northeast Atlantic Ocean and might be partly responsible for the formation of the shallow oxygen minimum zone.

Dissolved Rare Earth Elements in the US GEOTRACES North Atlantic Section

NASA Astrophysics Data System (ADS)

Shiller, A. M.

2016-12-01

The rare earth elements (REEs) are a unique chemical set wherein there are systematic changes in geochemical behavior across the series. Furthermore, while most REEs are in the +III oxidation state, Ce and Eu can be in other oxidation states leading to distinct characteristics of those elements. Thus, the geochemical properties of the REEs make them particularly useful tools for inquiring into various geochemical processes. As part of the US GEOTRACES effort, we determined dissolved REEs and Y at 32 stations across the North Atlantic during US cruises GT10 and GT11 along a meridional transect from Lisbon to the Cape Verde Islands and a zonal transect from Cape Cod to the Mauritanian coast. While profiles are similar to previous reports, the high spatial resolution of the section allows for better elucidation of processes. Light rare earths (LREEs) show removal in the upper water column with a minimum at the chlorophyll maximum. LREE concentrations then increase into the oxygen minimum followed by a slight decrease and fairly constant concentrations in the mid-water column followed by an increase into the deep and bottom waters. Heavy rare earths (HREEs) show a more monotonic increase with depth. We also take advantage of a previously published water mass analysis for the section to estimate that most of the deep water changes can be explained by conservative mixing of waters with different pre-formed REE concentrations. Nonetheless, the pattern of LREE shallow water removal followed by regeneration, possible re-scavenging, and then deep water input is still preserved. Other features of note include an increase in LREEs in the strong oxygen minimum zone off Mauritania, consistent with an association of REE cycling with the redox cycles of Fe and Mn. Also along the eastern margin, but below the oxygen minimum, a small but distinct increase in the cerium and europium anomalies is observed, consistent with terrigenous input. In hydrothermally influenced waters along the mid-Atlantic Ridge, there are increases in Ce/Ce*, Eu/Eu*, and Y/Ho but a decrease in Nd/Yb and in REE concentrations. Surface water distributions are more consistent with elements influenced by margin inputs than with atmospheric input.

On the preservation of laminated sediments along the western margin of North America

USGS Publications Warehouse

VanGeen, A.; Zheng, Yen; Bernhard, J.M.; Cannariato, K.G.; Carriquiry, J.; Dean, W.E.; Eakins, B.W.; Ortiz, J.D.; Pike, J.

2003-01-01

Piston, gravity, and multicores as well as hydrographic data were collected along the Pacific margin of Baja California to reconstruct past variations in the intensity of the oxygen-minimum zone (OMZ). Gravity cores collected from within the OMZ north of 24??N did not contain laminated surface sediments even though bottom water oxygen (BWO) concentrations were close to 5 ??mol/kg. However, many of the cores collected south of 24??N did contain millimeter- to centimeter-scale, brown to black laminations in Holocene and older sediments but not in sediments deposited during the Last Glacial Maximum. In addition to the dark laminations, Holocene sediments in Soledad Basin, silled at 290 m, also contain white coccolith laminae that probably represent individual blooms. Two open margin cores from 430 and 700 m depth that were selected for detailed radiocarbon dating show distinct transitions from bioturbated glacial sediment to laminated Holocene sediment occurring at 12.9 and 11.5 ka, respectively. The transition is delayed and more gradual (11.3-10.0 ka) in another dated core from Soledad Basin. The observations indicate that bottom-water oxygen concentrations dropped below a threshold for the preservation of laminations at different times or that a synchronous hydrographic change left an asynchronous sedimentary imprint due to local factors. With the caveat that laminated sections should therefore not be correlated without independent age control, the pattern of older sequences of laminations along the North American western margin reported by this and previous studies suggests that multiple patterns of regional productivity and ventilation prevailed over the past 60 kyr. Copyright 2003 by the American Geophysical Union.

Dynamics of tropical oxygen minium zones (OMZ): The role of vertical mixing and eddy stirring in ventilating the OMZ in the tropical Atlantic

NASA Astrophysics Data System (ADS)

Visbeck, M.; Banyte, D.; Brandt, P.; Dengler, M.; Fischer, T.; Karstensen, J.; Krahmann, G.; Tanhua, T. S.; Stramma, L.

2013-12-01

Equatorial Dynamics provide an essential influence on the ventilation pathways of well oxygenated surface water on their route to tropical oxygen minimum zones (OMZ). The large scale wind driven circulation shield OMZs from the direct ventilation pathways. They are located in the so called ';shadow zones' equator ward of the subtropical gyres. From what is known most of the oxygen is supplied via pathways from the western boundary modulated by the complex zonal equatorial current system and marginally by vertical mixing. What was less clear is which of the possible pathways are most effective in transporting dissolved oxygen towards the OMZ. A collaborative research program focused on the dynamics of oxygen minimum zones, called SFB754 "Climate - Biogeochemistry Interactions in the Tropical Ocean", allowed us to conduct two ocean tracer release experiments to investigate the vertical and horizontal mixing rates and associated oxygen transports. Specifically we report on the first deliberate tracer release experiment (GUTRE, Guinea Upwelling Tracer Release Experiment) in the tropical northeast Atlantic carried out in order to determine the diapycnal diffusivity coefficient in the upper layer of the OMZ. A tracer (CF3SF5) was injected in spring of 2008 and subsequently measured during three designated tracer survey cruises until the end of 2010. We found that, generally, the diffusivity is larger than expected for low latitudes and similar in magnitude to what has previously been experimentally determined in the Canary Basin. When combining the tracer study with estimates of diapycnal mixing based on microstructure profiling and a newly developed method using ship board ADCPs we were able to compute the vertical oxygen flux and its divergence for the OMZ. To our surprise, the vertical flux of oxygen by diapycnal mixing provides about 30% of the total ventilation. The estimate was derived from the simple advection-diffusion model taking into account moored and ship based velocity observations of the equatorial current systems along 23°W in the tropical Atlantic. However, the advective pathways are less certain and possibly more variable. Firstly, the strength of lateral eddy stirring and the role in oxygen transport is less well known, and is the focus of the ongoing second tracer release experiment (OSTRE, Oxygen Supply Tracer Release Experiment). Secondly, the analysis of historical data from the equatorial regime suggests that the observed decline in dissolved oxygen in the tropical North Atlantic might in part be a consequence of reduced horizontal ventilation by equatorial intermediate current systems. The uncertainty of the long-term variability of the circulation in the equatorial systems and additional uncertainty in the biogeochemical consumption rates provide a challenge for estimates of the future of the OMZ regimes. Model prediction of future oxygen changes depend on the models ability to reproduce the observed oxygen ventilation pathways and processes, which might limit the prediction's accuracy.

Lack of enhanced preservation of organic matter in sediments under the oxygen minimum on the Oman Margin

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pedersen, T.F.; Shimmield, G.B.; Price, N.B.

1992-01-01

The impingement of oxygen minima on continental margins is widely thought to promote the accumulation of sedimentary facies enriched in well-preserved organic matter. It is shown here, however, that such a relationship does not clearly apply to the productive Oman Margin in the Arabian Sea, which hosts one of the most severe oxygen minima in the oceans. Measurements made on the 0-1 cm depth interval from fourteen box cores collected from the outer shelf-upper continental slope area off Oman show that (1) deposited organic matter is overwhelmingly of marine origin, (2) there is no significant correlation between the abundance ofmore » sedimentary organic carbon (C{sub org}) and the bottom-water O{sub 2} concentration, (3) there is no relation between the sedimentary C{sub org}:N ratio and bottom-water O{sub 2}, and (4) there is no correlation between the hydrogen index (HI) of the organic matter and bottom water oxygen. There are, however, significant correlations between the C{sub org}:N ratio and the I:C{sub org}, Cr:Al, and Zr:Al ratios, as well as between the C{sub org}:N ratio and the hydrogen index. Overall, these data suggest that the bottom water oxygen concentration has little effect in governing either the distribution of the degree of preservation of organic matter on this margin. Thus, the generally high but spatially variable C{sub org} content of the sediments on the Oman Margin may not reflect the occurrence of an oxygen minimum but instead be the result of a high settling flux of organic matter, supported by monsoon-driven upwelling, and post-depositional redistribution of the organic material by hydrodynamic influences.« less

Strong depth-related zonation of megabenthos on a rocky continental margin (∼700-4000 m) off southern Tasmania, Australia.

PubMed

Thresher, Ronald; Althaus, Franziska; Adkins, Jess; Gowlett-Holmes, Karen; Alderslade, Phil; Dowdney, Jo; Cho, Walter; Gagnon, Alex; Staples, David; McEnnulty, Felicity; Williams, Alan

2014-01-01

Assemblages of megabenthos are structured in seven depth-related zones between ∼700 and 4000 m on the rocky and topographically complex continental margin south of Tasmania, southeastern Australia. These patterns emerge from analysis of imagery and specimen collections taken from a suite of surveys using photographic and in situ sampling by epibenthic sleds, towed video cameras, an autonomous underwater vehicle and a remotely operated vehicle (ROV). Seamount peaks in shallow zones had relatively low biomass and low diversity assemblages, which may be in part natural and in part due to effects of bottom trawl fishing. Species richness was highest at intermediate depths (1000-1300 m) as a result of an extensive coral reef community based on the bioherm-forming scleractinian Solenosmilia variabilis. However, megabenthos abundance peaked in a deeper, low diversity assemblage at 2000-2500 m. The S. variabilis reef and the deep biomass zone were separated by an extensive dead, sub-fossil S. variabilis reef and a relatively low biomass stratum on volcanic rock roughly coincident with the oxygen minimum layer. Below 2400 m, megabenthos was increasingly sparse, though punctuated by occasional small pockets of relatively high diversity and biomass. Nonetheless, megabenthic organisms were observed in the vast majority of photographs on all seabed habitats and to the maximum depths observed--a sandy plain below 3950 m. Taxonomic studies in progress suggest that the observed depth zonation is based in part on changing species mixes with depth, but also an underlying commonality to much of the seamount and rocky substrate biota across all depths. Although the mechanisms supporting the extraordinarily high biomass in 2000-2500 m depths remains obscure, plausible explanations include equatorwards lateral transport of polar production and/or a response to depth-stratified oxygen availability.

Oxygen and Temperature Effects on Vertically Migrating Animals in Oxygen Minimum Zones

NASA Astrophysics Data System (ADS)

Seibel, B.

2016-02-01

Large populations of oceanic nekton and zooplankton undergo daily migrations from shallow water at night to depths greater than 200 m during the daytime. In some regions, these migrations cross extreme gradients of temperature, oxygen and carbon dioxide. Oxygen minimum zones (OMZs) are extensive and characterized by deep-water (100-800 m) oxygen partial pressures that would be lethal to most marine organisms, yet are tolerated by vertical migrators. Climate change is predicted to further deplete oxygen, and measurable reductions in oxygen have already been documented in some regions. Increases in shallow water temperature and carbon dioxide are occurring simultaneously. Oxygen levels and temperature are important drivers of biodiversity and distribution, and documented changes in community structure and function are reportedly associated with OMZ expansion and warming. Here I answer fundamental questions concerning zooplankton distributions, adaptations, and functions in oxygen minimum zones. In particular I report that metabolic suppression is a common strategy that facilitates diel occupancy of extreme hypoxia in many oceanic taxa. Anaerobic metabolic pathways play a minimal role in compensating for reduced aerobic ATP production. Numerous epigenetic mechanisms lead to reductions in energetically costly cellular processes, such as transcription and translation. Total metabolism is reduced by 50% or more during exposure to levels of hypoxia that characterize the daytime habitat for most vertically-migrating zooplankton. I further show that many migrators approach their upper thermal maximum in shallow water at night. Thus expanding OMZs and global warming may together compress the habitable depth range for many species.

Mass-specific respiration of mesozooplankton and its role in the maintenance of an oxygen-deficient ecological barrier (BEDOX) in the upwelling zone off Chile upon presence of a shallow oxygen minimum zone

NASA Astrophysics Data System (ADS)

Donoso, Katty; Escribano, Ruben

2014-01-01

A shallow oxygen minimum zone (OMZ) in the coastal upwelling zone off Chile may vertically confine most zooplankton to a narrow (< 50 m) upper layer. From laboratory experiments, we estimated oxygen consumption of the mesozooplankton community obtained in Bay of Mejillones, northern Chile (23°S) in May 2010, December 2010 and August 2011. Mass-specific respiration rates were in the range of 8.2-24.5 μmol O2 mg dry mass- 1 day- 1, at an average temperature of 12 °C. Estimates of the mesozooplankton biomass in the water column indicated that its aerobic respiration may remove daily a maximum of about 20% of oxygen available at the base of the oxycline. Since previous work indicates that zooplankton aggregate near the base of the oxycline, the impact of aerobic respiration on oxygen content might be even stronger at this depth. Mesozooplankton respiration, along with community respiration by microorganisms near the base of the oxycline and a strongly stratified condition (limiting vertical flux of O2), are suggested as being critical factors causing and maintaining a persistent subsurface oxygen-deficient ecological barrier (BEDOX) in the upwelling zone. This BEDOX layer can have a major role in affecting and regulating zooplankton distribution and their dynamics in the highly productive coastal upwelling zone of the Humboldt Current System.

Uptake of algal carbon and the likely synthesis of an "essential" fatty acid by Uvigerina ex. gr. semiornata (Foraminifera) within the Pakistan margin oxygen minimum zone: evidence from fatty acid biomarker and 13C tracer experiments

NASA Astrophysics Data System (ADS)

Larkin, K. E.; Gooday, A. J.; Woulds, C.; Jeffreys, R. M.; Schwartz, M.; Cowie, G.; Whitcraft, C.; Levin, L.; Dick, J. R.; Pond, D. W.

2014-07-01

Foraminifera are an important component of benthic communities in oxygen-depleted settings, where they potentially play a significant role in the processing of organic matter. We tracked the uptake of a 13C-labelled algal food source into individual fatty acids in the benthic foraminiferal species Uvigerina ex. gr. semiornata from the Arabian Sea oxygen minimum zone (OMZ). The tracer experiments were conducted on the Pakistan margin during the late/post monsoon period (August-October 2003). A monoculture of the diatom Thalassiosira weisflogii was 13C-labelled and used to simulate a pulse of phytoplankton in two complementary experiments. A lander system was used for in situ incubations at 140 m water depth and for 2.5 days in duration. Shipboard laboratory incubations of cores collected at 140 m incorporated an oxystat system to maintain ambient dissolved oxygen concentrations and were terminated after 5 days. Uptake of diatoms was rapid, with a high incorporation of diatom fatty acids into foraminifera after ~ 2 days in both experiments. Ingestion of the diatom food source was indicated by the increase over time in the quantity of diatom biomarker fatty acids in the foraminifera and by the high percentage of 13C in many of the fatty acids present at the endpoint of both in situ and laboratory-based experiments. These results indicate that

A Theoretical Basis for the Transition to Denitrification at Nanomolar Oxygen Concentrations

NASA Astrophysics Data System (ADS)

Zakem, E.; Follows, M. J.

2016-02-01

Current climate change is likely to expand the size and intensity of marine oxygen minimum zones. How will this affect denitrification rates? Current global biogeochemical models typically prescribe a critical oxygen concentration below which anaerobic activity occurs, rather than resolve the underlying microbial processes. Here, we explore the dynamics of an idealized, simulated anoxic zone in which multiple prokaryotic metabolisms are resolved mechanistically, defined by redox chemistry and biophysical constraints. We first ask, what controls the critical oxygen concentration governing the favorability of aerobic or anaerobic respiration? The predicted threshold oxygen concentration varies as a function of the environment as well as of cell physiology, and lies within the nanomolar range. The model thus provides a theoretical underpinning for the recent observations of nanomolar oxygen concentrations in oxygen minimum zones. In the context of an idealized, two-dimensional intensified upwelling simulation, we also predict denitrification at oxygen concentrations orders of magnitude higher due to physical mixing, reconciling observations of denitrification over a similar range and demonstrating a decoupling of denitrification from the local oxygen concentration. In a sensitivity study with the idealized ocean model, we comment upon the relationship between the volume of anoxic waters and total denitrification.

Formation of Fe-Mn crusts within a continental margin environment

USGS Publications Warehouse

Conrad, Tracey A.; Hein, James R.; Paytan, Adina; Clague, David A.

2017-01-01

This study examines Fe-Mn crusts that form on seamounts along the California continental-margin (CCM), within the United States 200 nautical mile exclusive economic zone. The study area extends from approximately 30° to 38° North latitudes and from 117° to 126° West longitudes. The area of study is a tectonically active northeast Pacific plate boundary region and is also part of the North Pacific Subtropical Gyre with currents dominated by the California Current System. Upwelling of nutrient-rich water results in high primary productivity that produces a pronounced oxygen minimum zone. Hydrogenetic Fe-Mn crusts forming along the CCM show distinct chemical and mineral compositions compared to open-ocean crusts. On average, CCM crusts contain more Fe relative to Mn than open-ocean Pacific crusts. The continental shelf and slope release both Fe and Mn under low-oxygen conditions. Silica is also enriched relative to Al compared to open-ocean crusts. This is due to the North Pacific silica plume and enrichment of Si along the path of deep-water circulation, resulting in Si enrichment in bottom and intermediate waters of the eastern Pacific.The CCM Fe-Mn crusts have a higher percentage of birnessite than open-ocean crusts, reflecting lower dissolved seawater oxygen that results from the intense coastal upwelling and proximity to zones of continental slope pore-water anoxia. Carbonate fluorapatite (CFA) is not present and CCM crusts do not show evidence of phosphatization, even in the older sections. The mineralogy indicates a suboxic environment under which birnessite forms, but in which pH is not high enough to facilitate CFA deposition. Growth rates of CCM crusts generally increase with increasing water depth, likely due to deep-water Fe sources mobilized from reduced shelf and slope sediments.Many elements of economic interest including Mn, Co, Ni, Cu, W, and Te have slightly or significantly lower concentrations in CCM crusts relative to crusts from the Pacific Prime Crust Zone and other open-ocean basins. However, concentrations of total rare earth elements and yttrium average only slightly lower contents and in the future may be a strategic resource for the U.S.

Sediment Cd and Mo accumulation in the oxygen-minimum zone off western Baja California linked to global climate over the past 52 kyr

USGS Publications Warehouse

Dean, W.E.; Zheng, Yen; Ortiz, J.D.; VanGeen, A.

2006-01-01

Concentrations of organic carbon (orgC), cadmium (Cd), and molybdenum (Mo) were measured in two sediment cores raised from depths of 430 and 700 m within the oxygen-minimum zone (OMZ) off southern Baja California at a temporal resolution of e10.5 kyr over the past 52 kyr. These records are supplemented with diffuse spectral reflectance (DSR) measurements obtained on board ship soon after collection at a resolution of e10.05 kyr. In the core from 700 m depth, a component extracted from the DSR data and the three geochemical proxies generally vary in concert with each other and over a wide range (4-22% orgC; 1-40 mg/kg Cd; 5-120 mg/kg Mo). Intervals of increased orgC, Cd, and Mo accumulation generally correspond to warm periods recorded in the oxygen-isotopic composition of Greenland ice, with the exception of the Bolling/Allerod which is only weakly expressed off Baja California. Concentrations of the biogenic proxies are higher in the core from 430 m depth, but erratic sediment accumulation before 15 ka precludes dating of the older intervals that are laminated and contain elevated orgC, Cd, and Mo concentrations. The new data provide further evidence of an intimate teleconnection between global climate and the intensity of the OMZ and/or productivity along the western margin of North America. On the basis of a comparison with Cd and Mo records collected elsewhere in the region, we conclude that productivity may actually have varied off southern Baja California by no more than a factor of 2 over the past 52 kyr. Copyright 2006 by the American Geophysical Union.

Vertical oxygen minimum zone oscillations since 20 ka in Santa Barbara Basin: A benthic foraminiferal community perspective

NASA Astrophysics Data System (ADS)

Moffitt, Sarah E.; Hill, Tessa M.; Ohkushi, Kenichi; Kennett, James P.; Behl, Richard J.

2014-01-01

we present a history of deoxygenation of upper intermediate waters during the last deglaciation from Santa Barbara Basin (SBB), based on quantitative analyses of benthic foraminiferal assemblages, from a new shallow piston core above basin sill depth (MV0811-15JC, 418 m), and previously described sequences in the deeper basin (MD02-2504, 481 m and MD02-2503, 570 m). We document a 152 m depth transect of benthic foraminiferal assemblages to extract changing community structure (density, diversity, and evenness) and improve paleoenvironmental interpretation of late Quaternary vertical oscillations in the upper boundary of the oxygen minimum zone (OMZ). Close interaction between changes in open margin OMZ and that of the restricted SBB is documented using these quantitative techniques. MV0811-15JC, while being unlaminated, contains strongly hypoxic foraminiferal assemblages (including species Bolivina tumida and Nonionella stella), coeval with preserved sediment laminations in the deeper cores. Last Glacial Maximum (LGM) assemblages across this transect contained oxic fauna and high diversity. At 14.7 ka, glacial termination IA, hypoxic benthic fauna appeared across the transect, recording hypoxic waters (<0.5 ml L-1) < 300 m from the ocean surface. Bølling/Allerød (B/A) assemblages uniquely stand out in the record, exhibited by low density, diversity, and evenness, and taxonomic composition reflecting extreme and stressful hypoxia and methane-rich environments. Younger Dryas assemblages were diverse and composed of oxic fauna, similar to LGM assemblages. Termination IB initiated another deoxygenation shift, followed by OMZ-associated faunal and density patterns. This analysis strengthens the quantitative assessment of oxygen concentrations involved in deglacial OMZ change and reveals the unexpected, remarkable shallowness of OMZ influence during the B/A.

Pleistocene to Holocene contrasts in organic matter production and preservation on the California continental margin

USGS Publications Warehouse

Dean, W.E.; Gardner, J.V.

1998-01-01

Organic matter in sediments from cores collected from the upper continental slope (200-2700 m) off California and southern Oregon shows marked differences in concentration and marine character between the last glacial interval (ca. 24-10 ka) and either Holocene time or last interstadial (oxygen isotope stage 3, ca. 60-24 ka). In general, sediments deposited during Holocene time and stage 3 contain higher amounts of marine organic matter than those deposited during the last glacial interval, and this contrast is greatest in cores collected off southern California. The most profound differences in stage 3 sediments are between predominantly bioturbated sediments and occasional interbeds of laminated sediments. The sediments are from cores collected within the present oxygen minimum zone on the upper continental slope from as far north as the Oregon-California border to as far south as Point Conception. These upper Pleistocene laminated sediments contain more abundant hydrogen-rich (type II) marine algal organic matter than even surface sediments that have large amounts of nonrefractory organic matter. The stable carbon-isotopic composition of the organic matter does not change with time between bioturbated and laminated sediments, indicating that the greater abundance of type II organic matter in the laminated sediments is not due to a change in source but rather represents a greater degree of production and preservation of marine organic matter. The presence of abundant, well-preserved organic matter supports the theory that the oxygen minimum zone in the northeastern Pacific Ocean was more intense, and possibly anoxic, during late Pleistocene time as a result of increased coastal upwelling that enhanced algal productivity.

Meta-omic signatures of microbial metal and nitrogen cycling in marine oxygen minimum zones

PubMed Central

Glass, Jennifer B.; Kretz, Cecilia B.; Ganesh, Sangita; Ranjan, Piyush; Seston, Sherry L.; Buck, Kristen N.; Landing, William M.; Morton, Peter L.; Moffett, James W.; Giovannoni, Stephen J.; Vergin, Kevin L.; Stewart, Frank J.

2015-01-01

Iron (Fe) and copper (Cu) are essential cofactors for microbial metalloenzymes, but little is known about the metalloenyzme inventory of anaerobic marine microbial communities despite their importance to the nitrogen cycle. We compared dissolved O2, NO3−, NO2−, Fe and Cu concentrations with nucleic acid sequences encoding Fe and Cu-binding proteins in 21 metagenomes and 9 metatranscriptomes from Eastern Tropical North and South Pacific oxygen minimum zones and 7 metagenomes from the Bermuda Atlantic Time-series Station. Dissolved Fe concentrations increased sharply at upper oxic-anoxic transition zones, with the highest Fe:Cu molar ratio (1.8) occurring at the anoxic core of the Eastern Tropical North Pacific oxygen minimum zone and matching the predicted maximum ratio based on data from diverse ocean sites. The relative abundance of genes encoding Fe-binding proteins was negatively correlated with O2, driven by significant increases in genes encoding Fe-proteins involved in dissimilatory nitrogen metabolisms under anoxia. Transcripts encoding cytochrome c oxidase, the Fe- and Cu-containing terminal reductase in aerobic respiration, were positively correlated with O2 content. A comparison of the taxonomy of genes encoding Fe- and Cu-binding vs. bulk proteins in OMZs revealed that Planctomycetes represented a higher percentage of Fe genes while Thaumarchaeota represented a higher percentage of Cu genes, particularly at oxyclines. These results are broadly consistent with higher relative abundance of genes encoding Fe-proteins in the genome of a marine planctomycete vs. higher relative abundance of genes encoding Cu-proteins in the genome of a marine thaumarchaeote. These findings highlight the importance of metalloenzymes for microbial processes in oxygen minimum zones and suggest preferential Cu use in oxic habitats with Cu > Fe vs. preferential Fe use in anoxic niches with Fe > Cu. PMID:26441925

Meta-omic signatures of microbial metal and nitrogen cycling in marine oxygen minimum zones.

PubMed

Glass, Jennifer B; Kretz, Cecilia B; Ganesh, Sangita; Ranjan, Piyush; Seston, Sherry L; Buck, Kristen N; Landing, William M; Morton, Peter L; Moffett, James W; Giovannoni, Stephen J; Vergin, Kevin L; Stewart, Frank J

2015-01-01

Iron (Fe) and copper (Cu) are essential cofactors for microbial metalloenzymes, but little is known about the metalloenyzme inventory of anaerobic marine microbial communities despite their importance to the nitrogen cycle. We compared dissolved O2, NO[Formula: see text], NO[Formula: see text], Fe and Cu concentrations with nucleic acid sequences encoding Fe and Cu-binding proteins in 21 metagenomes and 9 metatranscriptomes from Eastern Tropical North and South Pacific oxygen minimum zones and 7 metagenomes from the Bermuda Atlantic Time-series Station. Dissolved Fe concentrations increased sharply at upper oxic-anoxic transition zones, with the highest Fe:Cu molar ratio (1.8) occurring at the anoxic core of the Eastern Tropical North Pacific oxygen minimum zone and matching the predicted maximum ratio based on data from diverse ocean sites. The relative abundance of genes encoding Fe-binding proteins was negatively correlated with O2, driven by significant increases in genes encoding Fe-proteins involved in dissimilatory nitrogen metabolisms under anoxia. Transcripts encoding cytochrome c oxidase, the Fe- and Cu-containing terminal reductase in aerobic respiration, were positively correlated with O2 content. A comparison of the taxonomy of genes encoding Fe- and Cu-binding vs. bulk proteins in OMZs revealed that Planctomycetes represented a higher percentage of Fe genes while Thaumarchaeota represented a higher percentage of Cu genes, particularly at oxyclines. These results are broadly consistent with higher relative abundance of genes encoding Fe-proteins in the genome of a marine planctomycete vs. higher relative abundance of genes encoding Cu-proteins in the genome of a marine thaumarchaeote. These findings highlight the importance of metalloenzymes for microbial processes in oxygen minimum zones and suggest preferential Cu use in oxic habitats with Cu > Fe vs. preferential Fe use in anoxic niches with Fe > Cu.

Distribution of dissolved manganese in the Peruvian Upwelling and Oxygen Minimum Zone

NASA Astrophysics Data System (ADS)

Vedamati, Jagruti; Chan, Catherine; Moffett, James W.

2015-05-01

The geochemistry of manganese (Mn) in seawater is dominated by its redox chemistry, as Mn(II) is soluble and Mn(IV) forms insoluble oxides, and redox transformations are mediated by a variety of processes in the oceans. Dissolved Mn (DMn) accumulates under reducing conditions and is depleted under oxidizing conditions. Thus the Peruvian upwelling region, characterized by highly reducing conditions over a broad continental shelf and a major oxygen minimum zone extending far offshore, is potentially a large source of Mn to the eastern Tropical South Pacific. In this study, DMn was determined on cruises in October 2005 and February 2010 in the Peruvian Upwelling and Oxygen Minimum Zone, to evaluate the relationship between Mn, oxygen and nitrogen cycle processes. DMn concentrations were determined using simple dilution and matrix-matched external standardization inductively coupled mass spectrometry. Surprisingly, DMn was depleted under the most reducing conditions along the Peruvian shelf. Concentrations of dissolved Mn in surface waters increased offshore, indicating that advection of Mn offshore from the Peruvian shelf is a minor source. Subsurface Mn maxima were observed within the oxycline rather than within the oxygen minimum zone (OMZ), indicating they arise from remineralization of organic matter rather than reduction of Mn oxides. The distribution of DMn appears to be dominated by non-redox processes and inputs from the atmosphere and from other regions associated with specific water masses. Lower than expected DMn concentrations on the shelf probably reflect limited fluvial inputs from the continent and efficient offshore transport. This behavior is in stark contrast to Fe, reported in a companion study which is very high on the shelf and undergoes dynamic redox cycling.

Macrofauna regulate heterotrophic bacterial carbon and nitrogen incorporation in low-oxygen sediments

PubMed Central

Hunter, William R; Veuger, Bart; Witte, Ursula

2012-01-01

Oxygen minimum zones (OMZs) currently impinge upon >1 million km2 of sea floor and are predicted to expand with climate change. We investigated how changes in oxygen availability, macrofaunal biomass and retention of labile organic matter (OM) regulate heterotrophic bacterial C and N incorporation in the sediments of the OMZ-impacted Indian continental margin (540–1100 m; [O2]=0.35–15 μmol l−1). In situ pulse-chase experiments traced 13C:15N-labelled phytodetritus into bulk sediment OM and hydrolysable amino acids, including the bacterial biomarker 𝒟-alanine. Where oxygen availability was lowest ([O2]=0.35 μmol l−1), metazoan macrofauna were absent and bacteria assimilated 30–90% of the labelled phytodetritus within the sediment. At higher oxygen levels ([O2]=2–15 μmol l−1) the macrofaunal presence and lower phytodetritus retention with the sediment occur concomitantly, and bacterial phytodetrital incorporation was reduced and retarded. Bacterial C and N incorporation exhibited a significant negative relationship with macrofaunal biomass across the OMZ. We hypothesise that fauna–bacterial interactions significantly influence OM recycling in low-oxygen sediments and need to be considered when assessing the consequences of global change on biogeochemical cycles. PMID:22592818

Nitrous oxide production by nitrification and denitrification in the Eastern Tropical South Pacific oxygen minimum zone

NASA Astrophysics Data System (ADS)

Ji, Qixing; Babbin, Andrew R.; Jayakumar, Amal; Oleynik, Sergey; Ward, Bess B.

2015-12-01

The Eastern Tropical South Pacific oxygen minimum zone (ETSP-OMZ) is a site of intense nitrous oxide (N2O) flux to the atmosphere. This flux results from production of N2O by nitrification and denitrification, but the contribution of the two processes is unknown. The rates of these pathways and their distributions were measured directly using 15N tracers. The highest N2O production rates occurred at the depth of peak N2O concentrations at the oxic-anoxic interface above the oxygen deficient zone (ODZ) because slightly oxygenated waters allowed (1) N2O production from both nitrification and denitrification and (2) higher nitrous oxide production yields from nitrification. Within the ODZ proper (i.e., anoxia), the only source of N2O was denitrification (i.e., nitrite and nitrate reduction), the rates of which were reflected in the abundance of nirS genes (encoding nitrite reductase). Overall, denitrification was the dominant pathway contributing the N2O production in the ETSP-OMZ.

Communicating Emerging Issues in Ocean Hypoxia (or Suffocating in Your Own Home)

NASA Astrophysics Data System (ADS)

Whitney, F. A.; Tunnicliffe, V.; Diaz, R. J.

2009-12-01

Some large regions of our interior oceans are losing oxygen both from the impacts of human uses of coastal margins and the impacts that climate change is having on ocean circulation. As oxygen minimum zones expand, impacts are especially noticed along the edges of continents. Ecosystems are being affected in ways that result in habitat compression or forced migrations. Looking into the future, we foresee large scale disruptions to habitat that, in some cases, will dramatically impact fish productivity. As waters become more hypoxic, energy fixed by marine plants will be less available to support higher trophic levels (e.g. fish and marine mammals). Communicating concern about hypoxia has its challenges: the word itself is poorly know to those on land who live in an oxygen-rich world. Thus, crucial factors in effective communication include illustrating: i) how many ocean animals live “on the edge”, ii) how ocean organisms respond to hypoxia iii) the long-term effects on ocean ecosystems and iv) causes and mitigation. For media that respond to visual stimulation, good graphics, evocative analogies and focussed examples are important.

Three-Dimensional Distribution of Larval Fish Habitats in the Shallow Oxygen Minimum Zone in the Eastern Tropical Pacific Ocean off Mexico

NASA Astrophysics Data System (ADS)

Davies, S.; Sanchez Velasco, L.; Beier, E.; Godinez, V. M.; Barton, E. D.; Tamayo, A.

2016-02-01

Three-dimensional distribution of larval fish habitats was analyzed, from the upper limit of the shallow oxygen minimum zone ( 0.2 mL/L) to the sea surface, in the eastern tropical Pacific Ocean off Mexico in February 2010.The upper limit rises from 250 m depth in the entrance of the Gulf of California to 80 m depth off Cabo Corrientes. Three larval fish habitats were defined statistically: (i) a Gulf of California habitat dominated by Anchoa spp. larvae (epipelagic species), constrained to the oxygenated surface layer (>3.5 mL/L) in and above the thermocline ( 60 m depth), and separated by a salinity front from the Tropical Pacific habitat; (ii) a Tropical Pacific habitat, dominated by Vinciguerria lucetia larvae (mesopelagic species), located throughout the sampled water column, but with the highest abundance in the oxygenated upper layer above the thermocline; (iii) an Oxygen Minimum habitat defined mostly below the thermocline in hypoxic (<1 mL/L; 70 m depth) and anoxic (<0.2 mL/L; 80 m depth) water off Cabo Corrientes. This subsurface hypoxic habitat had the highest species richness and larval abundance, with dominance of Bregmaceros bathymaster, an endemic neritic pelagic species; which was an unexpected result. This maybe associated with the shoaling of the upper limit of the shallow oxygen minimum zone near the coast, a result of the strong costal upwelling detected by the Bakun Index. In this region of strong and semi-continuous coastal upwelling in the eastern tropical Pacific off Mexico, the shallow hypoxic water does not have dramatic effects on the total larval fish abundance but appears to affect species composition.

Do submesoscale frontal processes ventilate the oxygen minimum zone off Peru?

NASA Astrophysics Data System (ADS)

Thomsen, S.; Kanzow, T.; Colas, F.; Echevin, V.; Krahmann, G.; Engel, A.

2016-08-01

The Peruvian upwelling system encompasses the most intense and shallowest oxygen minimum zone (OMZ) in the ocean. This system shows pronounced submesoscale activity like filaments and fronts. We carried out glider-based observations off Peru during austral summer 2013 to investigate whether submesoscale frontal processes ventilate the Peruvian OMZ. We present observational evidence for the subduction of highly oxygenated surface water in a submesoscale cold filament. The subduction event ventilates the oxycline but does not reach OMZ core waters. In a regional submesoscale-permitting model we study the pathways of newly upwelled water. About 50% of upwelled virtual floats are subducted below the mixed layer within 5 days emphasizing a hitherto unrecognized importance of subduction for the ventilation of the Peruvian oxycline.

Earth-System Scales of Biodiversity Variability in Shallow Continental Margin Seafloor Ecosystems

NASA Astrophysics Data System (ADS)

Moffitt, S. E.; White, S. M.; Hill, T. M.; Kennett, J.

2015-12-01

High-resolution paleoceanographic sedimentary sequences allow for the description of ecosystem sensitivity to earth-system scales of climate and oceanographic change. Such archives from Santa Barbara Basin, California record the ecological consequences to seafloor ecosystems of climate-forced shifts in the California Current Oxygen Minimum Zone (OMZ). Here we use core MV0508-20JPC dated to 735,000±5,000 years ago (Marine Isotope Stage 18) as a "floating window" of millennial-scale ecological variability. For this investigation, previously published archives of planktonic δ18O (Globigerina bulloides) record stadial and interstadial oscillations in surface ocean temperature. Core MV0508-20JPC is an intermittently laminated archive, strongly influenced by the California Current OMZ, with continuously preserved benthic foraminifera and discontinuously preserved micro-invertebrates, including ophiuroids, echinoderms, ostracods, gastropods, bivalves and scaphopods. Multivariate statistical approaches, such as ordinations and cluster analyses, describe climate-driven changes in both foraminiferal and micro-invertebrate assemblages. Statistical ordinations illustrate that the shallow continental margin seafloor underwent predictable phase-shifts in oxygenation and biodiversity across stadial and interstadial events. A narrow suite of severely hypoxic taxa characterized foraminiferal communities from laminated intervals, including Bolivina tumida, Globobulimina spp., and Nonionella stella. Foraminiferal communities from bioturbated intervals are diverse and >60% similar to each other, and they are associated with echinoderm, ostracod and mollusc fossils. As with climate shifts in the latest Quaternary, there is a sensitive benthic ecosystem response in mid-Pleistocene continental margins to climatically related changes in OMZ strength.

(Tele)presenting Secrets from the Deep Southern California Margin

NASA Astrophysics Data System (ADS)

Levin, L. A.; Girguis, P. R.; Brennan, M.; German, C. R.; Raineault, N.; Le, J. T.; Grupe, B.; Gallo, N.; Inderbitzen, K. E.; Tuzun, S.; Wagner, J.

2016-02-01

This past summer scientists, students and the public participated through telepresence in 2 weeks of deep-sea exploration via the EV Nautilus, visiting a tremendous diversity of sites found along the southern California continental margin (200-900m). We observed previously unknown cold seeps; new and unexpected assemblages and species distributions; and novel animal behaviors; all under the overarching influence of strong oxygen gradients from the East Pacific oxygen minimum zone (OMZ). The expedition discovered four new methane seep sites, each with distinct biota reflecting varying depth and oxygen levels. OMZ specialists such as lucinid clams, hagfish, and thornyhead fishes coexisted with seep biota (vesicoymid clams) at a 1.4-km long seep off Point Dume (Malibu, CA), forming a blended ecosystem with distinct zonation. A range of habitats (canyons, knolls, mounds) within the OMZ hosted fish, crustacean, echinoderm and cnidarian species with unusual hypoxia tolerance to < 3 µM O2 or lower. Organic falls (a sunken whale and naturally occurring kelp holdfasts) hosted many invertebrates and served as clear magnets for scavengers and predators. In situ observations revealed unusual behaviors including "parasailing" snails and drifting benthic siphonophores in the Santa Monica Basin, fish aggregating at seep carbonates, and cruising catsharks and their egg cases at methane seeps. Many of these observations advance understanding of the ecosystem services provided by deep-sea, margin habitats, while stimulating public interest in ocean exploration. Telepresence permitted broad engagement of students and scientists from as near as Los Angeles and as far as South Africa, as well as meaningful interactions with the public. In situ exploration and observation can and will play increasingly important roles in environmental management of the deep ocean as disturbance from resource extraction and climate change intensify.

Late Glacial-Holocene record of benthic foraminiferal morphogroups from the eastern Arabian Sea OMZ: Paleoenvironmental implications

NASA Astrophysics Data System (ADS)

Verma, K.; Bharti, S. K.; Singh, A. D.

2018-03-01

The Arabian Sea is characterized today by a well-developed and perennial oxygen minimum zone (OMZ) at mid-water depths. The Indian margin where the OMZ impinges provides sediment records ideal to study past changes in the OMZ intensity and its vertical extent in response to the changes of monsoon-driven primary productivity and intermediate water ventilation. Benthic foraminifera, depending upon their adaptation capabilities to variation in sea floor environment and microhabitat preferences, develop various functional morphologies that can be potentially used in paleoenvironmental reconstruction. In this study, we analysed benthic foraminiferal morphogroups in assemblage records of the last 30 ka in a sediment core collected from the lower OMZ of the Indian margin (off Goa). In total, nine morphogroups within two broadly classified epifaunal and infaunal microhabitat categories are identified. The abundance of morphogroups varies significantly during the late Glacial, Deglacial and Holocene. It appears that monsoon wind driven organic matter flux, and water column ventilation governing the OMZ intensity and sea-bottom oxygen condition, have profound influence on structuring the benthic foraminiferal morphogroups. We found a few morphogroups showing major changes in their abundances during the periods corresponding to the northern hemisphere climatic events. Benthic foraminifera with planoconvex tests are abundant during the cold Heinrich events, when the sea bottom was oxygenated due to a better ventilated, weak OMZ; whereas, those having tapered/cylindrical tests dominate during the last glacial maximum and the Holocene between 5 and 8 ka BP, when the OMZ was intensified and poorly ventilated, leading to oxygen-depleted benthic environment. Characteristically, increased abundance of taxa with milioline tests during the Heinrich 1 further suggests enhanced ventilation attributed probably to the influence of oxygen-rich Antarctic Intermediate Water (AAIW).

Critical oxygen levels and metabolic suppression in oceanic oxygen minimum zones.

PubMed

Seibel, Brad A

2011-01-15

The survival of oceanic organisms in oxygen minimum zones (OMZs) depends on their total oxygen demand and the capacities for oxygen extraction and transport, anaerobic ATP production and metabolic suppression. Anaerobic metabolism and metabolic suppression are required for daytime forays into the most extreme OMZs. Critical oxygen partial pressures are, within a range, evolved to match the minimum oxygen level to which a species is exposed. This fact demands that low oxygen habitats be defined by the biological response to low oxygen rather than by some arbitrary oxygen concentration. A broad comparative analysis of oxygen tolerance facilitates the identification of two oxygen thresholds that may prove useful for policy makers as OMZs expand due to climate change. Between these thresholds, specific physiological adaptations to low oxygen are required of virtually all species. The lower threshold represents a limit to evolved oxygen extraction capacity. Climate change that pushes oxygen concentrations below the lower threshold (~0.8 kPa) will certainly result in a transition from an ecosystem dominated by a diverse midwater fauna to one dominated by diel migrant biota that must return to surface waters at night. Animal physiology and, in particular, the response of animals to expanding hypoxia, is a critical, but understudied, component of biogeochemical cycles and oceanic ecology. Here, I discuss the definition of hypoxia and critical oxygen levels, review adaptations of animals to OMZs and discuss the capacity for, and prevalence of, metabolic suppression as a response to temporary residence in OMZs and the possible consequences of climate change on OMZ ecology.

Flux and accumulation of sedimentary particles off the continental slope of Pakistan: a comparison of water column and seafloor estimates from the oxygen minimum zone, NE Arabian Sea

NASA Astrophysics Data System (ADS)

Schulz, H.; von Rad, U.

2013-07-01

Due to the lack of bioturbation, the laminated muds from the oxygen-minimum zone (OMZ) off Pakistan provide a unique opportunity to precisely determine the vertical and lateral sediment fluxes in the near shore part of the northeastern Arabian Sea, and to explore the effects of the margin topography and the low oxygen conditions on the accumulation of organic matter and other particles. West of Karachi, in the Hab river area of EPT and WPT (Eastern and Western PAKOMIN Traps), 16 short sediment profiles from water depths between 250 m and 1970 m on a depth transect crossing the OMZ (~ 120 to ~ 1200 m water depth) were investigated, and correlated on the basis of a thick, light-gray- to reddish-colored turbidite layer. Varve counting yielded a date for this layer of AD 1905 to 1888. We adopted the young age which agrees with 210Pb- dating, and used this isochronous stratigraphic marker bed to calculate sediment accumulation rates, that we could directly compare with the flux rates from the sediment traps installed within the water column above. All traps in the area show exceptionally high, pulsed winter fluxes of up to 5000 mg m-2 d-1 in this margin environment. The lithic flux at the sea floor is as high as 4000 mg m-2 d-1 , and agrees remarkably well with the bulk winter flux of material. This holds as well for the individual bulk components (organic carbon, calcium carbonate, opal, lithic fraction). However, the high winter flux events (HFE) by their extreme mass of remobilized matter terminated the recording in the shallow traps by clogging the funnels. Based on our comparisons, we argue that HFE for the past 5000 yr most likely occurred as regular events within the upper OMZ off Pakistan. Coarse fraction and foraminiferal accumulation rates from sediment surface samples along the Hab transect show distribution patterns that seem to be a function of water depth and distance from the shelf. Some of these sediment fractions show sudden shifts at the lower boundary of the OMZ. However, the potential effect of the OMZ on carbon preservation in the area would by masked by high mass of fine-grained matter laterally advected, and by the pulsed nature of the resuspension events.

The open sea as the main source of methylmercury in the water column of the Gulf of Lions (Northwestern Mediterranean margin)

NASA Astrophysics Data System (ADS)

Cossa, Daniel; Durrieu de Madron, Xavier; Schäfer, Jörg; Lanceleur, Laurent; Guédron, Stéphane; Buscail, Roselyne; Thomas, Bastien; Castelle, Sabine; Naudin, Jean-Jacques

2017-02-01

Despite the ecologic and economical importance of coastal areas, the neurotoxic bioaccumulable monomethylmercury (MMHg) fluxes within the ocean margins and exchanges with the open sea remain unassessed. The aim of this paper is to address the questions of the abundance, distribution, production and exchanges of methylated mercury species (MeHgT), including MMHg and dimethylmercury (DMHg), in the waters, atmosphere and sediments of the Northwestern Mediterranean margin including the Rhône River delta, the continental shelf and its slope (Gulf of Lions) and the adjacent open sea (North Gyre). Concentrations of MeHgT ranged from <0.02 to 0.48 pmol L-1 with highest values associated with the oxygen-deficient zone of the open sea. The methylated mercury to total mercury proportion (MeHgT/HgT) increased from 2% to 4% in the Rhône River to up to 30% (averaging 18%) in the North Gyre waters, whereas, within the shelf waters, MeHgT/HgT proportions were the lowest (1-3%). We calculate that the open sea is the major source of MeHgT for the shelf waters, with an annual flux estimated at 0.68 ± 0.12 kmol a-1 (i.e., equivalent to 12% of the HgT flux). This MeHgT influx is more than 80 times the direct atmospheric deposition or the in situ net production, more than 40 times the estimated "maximum potential" annual efflux from shelf sediment, and more than 7 times that of the continental sources. In the open sea, ratios of MMHg/DMHg in waters were always <1 and minimum in the oxygen deficient zones of the water column, where MeHg concentrations are maximum. This observation supports the idea that MMHg could be a degradation product of DMHg produced from inorganic divalent Hg.

Strong Depth-Related Zonation of Megabenthos on a Rocky Continental Margin (∼700–4000 m) off Southern Tasmania, Australia

PubMed Central

Thresher, Ronald; Althaus, Franziska; Adkins, Jess; Gowlett-Holmes, Karen; Alderslade, Phil; Dowdney, Jo; Cho, Walter; Gagnon, Alex; Staples, David; McEnnulty, Felicity; Williams, Alan

2014-01-01

Assemblages of megabenthos are structured in seven depth-related zones between ∼700 and 4000 m on the rocky and topographically complex continental margin south of Tasmania, southeastern Australia. These patterns emerge from analysis of imagery and specimen collections taken from a suite of surveys using photographic and in situ sampling by epibenthic sleds, towed video cameras, an autonomous underwater vehicle and a remotely operated vehicle (ROV). Seamount peaks in shallow zones had relatively low biomass and low diversity assemblages, which may be in part natural and in part due to effects of bottom trawl fishing. Species richness was highest at intermediate depths (1000–1300 m) as a result of an extensive coral reef community based on the bioherm-forming scleractinian Solenosmilia variabilis. However, megabenthos abundance peaked in a deeper, low diversity assemblage at 2000–2500 m. The S. variabilis reef and the deep biomass zone were separated by an extensive dead, sub-fossil S. variabilis reef and a relatively low biomass stratum on volcanic rock roughly coincident with the oxygen minimum layer. Below 2400 m, megabenthos was increasingly sparse, though punctuated by occasional small pockets of relatively high diversity and biomass. Nonetheless, megabenthic organisms were observed in the vast majority of photographs on all seabed habitats and to the maximum depths observed - a sandy plain below 3950 m. Taxonomic studies in progress suggest that the observed depth zonation is based in part on changing species mixes with depth, but also an underlying commonality to much of the seamount and rocky substrate biota across all depths. Although the mechanisms supporting the extraordinarily high biomass in 2000–2500 m depths remains obscure, plausible explanations include equatorwards lateral transport of polar production and/or a response to depth-stratified oxygen availability. PMID:24465758

Oceanographic and biological effects of shoaling of the oxygen minimum zone.

PubMed

Gilly, William F; Beman, J Michael; Litvin, Steven Y; Robison, Bruce H

2013-01-01

Long-term declines in oxygen concentrations are evident throughout much of the ocean interior and are particularly acute in midwater oxygen minimum zones (OMZs). These regions are defined by extremely low oxygen concentrations (<20-45 μmol kg(-1)), cover wide expanses of the ocean, and are associated with productive oceanic and coastal regions. OMZs have expanded over the past 50 years, and this expansion is predicted to continue as the climate warms worldwide. Shoaling of the upper boundaries of the OMZs accompanies OMZ expansion, and decreased oxygen at shallower depths can affect all marine organisms through multiple direct and indirect mechanisms. Effects include altered microbial processes that produce and consume key nutrients and gases, changes in predator-prey dynamics, and shifts in the abundance and accessibility of commercially fished species. Although many species will be negatively affected by these effects, others may expand their range or exploit new niches. OMZ shoaling is thus likely to have major and far-reaching consequences.

Hypoxia Tolerance and Metabolic Suppression in Oxygen Minimum Zone Euphausiids: Implications for Ocean Deoxygenation and Biogeochemical Cycles.

PubMed

Seibel, Brad A; Schneider, Jillian L; Kaartvedt, Stein; Wishner, Karen F; Daly, Kendra L

2016-10-01

The effects of regional variations in oxygen and temperature levels with depth were assessed for the metabolism and hypoxia tolerance of dominant euphausiid species. The physiological strategies employed by these species facilitate prediction of changing vertical distributions with expanding oxygen minimum zones and inform estimates of the contribution of vertically migrating species to biogeochemical cycles. The migrating species from the Eastern Tropical Pacific (ETP), Euphausia eximia and Nematoscelis gracilis, tolerate a Partial Pressure (PO2) of 0.8 kPa at 10 °C (∼15 µM O2) for at least 12 h without mortality, while the California Current species, Nematoscelis difficilis, is incapable of surviving even 2.4 kPa PO2 (∼32 µM O2) for more than 3 h at that temperature. Euphausia diomedeae from the Red Sea migrates into an intermediate oxygen minimum zone, but one in which the temperature at depth remains near 22 °C. Euphausia diomedeae survived 1.6 kPa PO2 (∼22 µM O2) at 22 °C for the duration of six hour respiration experiments. Critical oxygen partial pressures were estimated for each species, and, for E. eximia, measured via oxygen consumption (2.1 kPa, 10 °C, n = 2) and lactate accumulation (1.1 kPa, 10 °C). A primary mechanism facilitating low oxygen tolerance is an ability to dramatically reduce energy expenditure during daytime forays into low oxygen waters. The ETP and Red Sea species reduced aerobic metabolism by more than 50% during exposure to hypoxia. Anaerobic glycolytic energy production, as indicated by whole-animal lactate accumulation, contributed only modestly to the energy deficit. Thus, the total metabolic rate was suppressed by ∼49-64%. Metabolic suppression during diel migrations to depth reduces the metabolic contribution of these species to vertical carbon and nitrogen flux (i.e., the biological pump) by an equivalent amount. Growing evidence suggests that metabolic suppression is a widespread strategy among migrating zooplankton in oxygen minimum zones and may have important implications for the economy and ecology of the oceans. The interacting effects of oxygen and temperature on the metabolism of oceanic species facilitate predictions of changing vertical distribution with climate change. © The Author 2016. Published by Oxford University Press on behalf of the Society for Integrative and Comparative Biology. All rights reserved. For permissions please email: journals.permissions@oup.com.

Organic carbon, and not copper, controls denitrification in oxygen minimum zones of the ocean

NASA Astrophysics Data System (ADS)

Ward, Bess B.; Tuit, Caroline B.; Jayakumar, Amal; Rich, Jeremy J.; Moffett, James; Naqvi, S. Wajih A.

2008-12-01

Incubation experiments under trace metal clean conditions and ambient oxygen concentrations were used to investigate the response of microbial assemblages in oxygen minimum zones (OMZs) to additions of organic carbon and copper, two factors that might be expected to limit denitrification in the ocean. In the OMZs of the Eastern Tropical North and South Pacific, denitrification appeared to be limited by organic carbon; exponential cell growth and rapid nitrate and nitrite depletion occurred upon the addition of small amounts of carbon, but copper had no effect. In the OMZ of the Arabian Sea, neither carbon nor copper appeared to be limiting. We hypothesize that denitrification is variable in time and space in the OMZs in ways that may be predictable based on links to the episodic supply of organic substrates from overlying productive surface waters.

Comparative organic geochemistry of Indian margin (Arabian Sea) sediments: estuary to continental slope

NASA Astrophysics Data System (ADS)

Cowie, G.; Mowbray, S.; Kurian, S.; Sarkar, A.; White, C.; Anderson, A.; Vergnaud, B.; Johnstone, G.; Brear, S.; Woulds, C.; Naqvi, S. W.; Kitazato, H.

2014-02-01

Surface sediments from sites across the Indian margin of the Arabian Sea were analysed for their carbon and nitrogen compositions (elemental and stable isotopic), grain size distributions and biochemical indices of organic matter (OM) source and/or degradation state. Site locations ranged from the estuaries of the Mandovi and Zuari rivers to depths of ~ 2000 m on the continental slope, thus spanning nearshore muds and sands on the shelf and both the semi-permanent oxygen minimum zone (OMZ) on the upper slope (~ 200-1300 m) and the seasonal hypoxic zone that impinges on the shelf. Source indices showed mixed marine and terrigenous OM within the estuaries, and overwhelming predominance (80%+) of marine OM on the shelf and slope. Thus, riverine OM is heavily diluted by autochthonous marine OM and/or is efficiently remineralised within or immediately offshore of the estuaries. Any terrigenous OM that is exported appears to be retained in nearshore muds; lignin phenols indicate that the small terrigenous OM content of slope sediments is of different origin, potentially from rivers to the north. Organic C contents of surface shelf and slope sediments varied from < 0.5 wt % in relict shelf sands to over 7 wt % at slope sites within the OMZ, decreasing to ≤ 1 wt % at 2000 m. Major variability (~ 5 wt %) was found at slope sites within the OMZ of similar depth and near-identical bottom-water oxygen concentration. A strong relationship between organic C and sediment grain size was seen for sediments within the OMZ, but lower C loadings were found for sites on the shelf and below the OMZ. Diagenetic indices confirmed that lower C content below the OMZ is associated with greater extent of OM degradation, but that C-poor shelf sediments are not consistently more degraded than those within the OMZ. Together, the results indicate that OM enrichment on the upper slope can be explained by physical controls (winnowing and/or dilution) on the shelf and progressive OM degradation with increasing oxygen exposure below the OMZ. Reduced oxygen exposure may contribute to OM enrichment at some sites within the OMZ, but hydrodynamic processes are the overriding control on sediment OM distribution.

Mesoscale Activity and Nitrogen-loss in the Oxygen Minimum Zone of the Eastern Tropical Pacific During ENSO Conditions

NASA Astrophysics Data System (ADS)

Montes, I.; Dewitte, B.; Gutknecht, E.; Paulmier, A.; Dadou, I.; Oschlies, A.; Garçon, V. C.

2015-12-01

The Eastern Tropical South Pacific encompasses one of the most extended Oxygen Minimum zones, which is mainly maintained by a combination of sluggish circulation and high biological productivity in the surface layer leading to elevate organic matter decomposition consuming dissolved oxygen. Low-oxygen areas are important not only for macroorganisms that cannot survive in oxygen-poor conditions, but also because of special biogeochemical processes occurring at low oxygen concentrations. In particular, a large fraction of oceanic nitrogen-loss occurs in these areas via anaerobic microbial processes. These include denitrification and axammox that both lead to a net loss of fixed nitrogen once oxygen concentrations have fallen below some threshold of a few umol/l. Recently it has been found that eddies may act as nitrogen-loss hotspots, possibly by shielding enclosed water parcels from lateral mixing with better ventilated oxygen-richer waters outside the eddies. Here we used a regional coupled biogeochemical model to investigate the relationship between eddies and the nitrogen-loss. We also investigate the mechanisms responsible for the generation of eddies and for possible modulations of eddy activity on interannual timescales, in particular during cold and warm phases of the El Nino Southern Oscillation.

Balancing the (carbon) budget: Using linear inverse models to estimate carbon flows and mass-balance 13C:15N labelling experiments in low oxygen sediments.

NASA Astrophysics Data System (ADS)

Hunter, William Ross; Van Oevelen, Dick; Witte, Ursula

2013-04-01

Over 1 million km2 of seafloor experience permanent low-oxygen conditions within oxygen minimum zones (OMZs). OMZs are predicted to grow as a consequence of climate change, potentially affecting oceanic biogeochemical cycles. The Arabian Sea OMZ impinges upon the western Indian continental margin at bathyal depths (150 - 1500m) producing a strong depth dependent oxygen gradient at the sea floor. The influence of the OMZ upon the short term processing of organic matter by sediment ecosystems was investigated using in situ stable isotope pulse chase experiments. These deployed doses of 13C:15N labeled organic matter onto the sediment surface at four stations from across the OMZ (water depth 540 - 1100 m; [O2] = 0.35 - 15 μM). In order to prevent experimentally anoxia, the mesocosms were not sealed. 13C and 15N labels were traced into sediment, bacteria, fauna and 13C into sediment porewater DIC and DOC. However, the DIC and DOC flux to the water column could not be measured, limiting our capacity to obtain mass-balance for C in each experimental mesocosm. Linear Inverse Modeling (LIM) provides a method to obtain a mass-balanced model of carbon flow that integrates stable-isotope tracer data with community biomass and biogeochemical flux data from a range of sources. Here we present an adaptation of the LIM methodology used to investigate how ecosystem structure influenced carbon flow across the Indian margin OMZ. We demonstrate how oxygen conditions affect food-web complexity, affecting the linkages between the bacteria, foraminifera and metazoan fauna, and their contributions to benthic respiration. The food-web models demonstrate how changes in ecosystem complexity are associated with oxygen availability across the OMZ and allow us to obtain a complete carbon budget for the stationa where stable-isotope labelling experiments were conducted.

Microbial oceanography of anoxic oxygen minimum zones.

PubMed

Ulloa, Osvaldo; Canfield, Donald E; DeLong, Edward F; Letelier, Ricardo M; Stewart, Frank J

2012-10-02

Vast expanses of oxygen-deficient and nitrite-rich water define the major oxygen minimum zones (OMZs) of the global ocean. They support diverse microbial communities that influence the nitrogen economy of the oceans, contributing to major losses of fixed nitrogen as dinitrogen (N(2)) and nitrous oxide (N(2)O) gases. Anaerobic microbial processes, including the two pathways of N(2) production, denitrification and anaerobic ammonium oxidation, are oxygen-sensitive, with some occurring only under strictly anoxic conditions. The detection limit of the usual method (Winkler titrations) for measuring dissolved oxygen in seawater, however, is much too high to distinguish low oxygen conditions from true anoxia. However, new analytical technologies are revealing vanishingly low oxygen concentrations in nitrite-rich OMZs, indicating that these OMZs are essentially anoxic marine zones (AMZs). Autonomous monitoring platforms also reveal previously unrecognized episodic intrusions of oxygen into the AMZ core, which could periodically support aerobic metabolisms in a typically anoxic environment. Although nitrogen cycling is considered to dominate the microbial ecology and biogeochemistry of AMZs, recent environmental genomics and geochemical studies show the presence of other relevant processes, particularly those associated with the sulfur and carbon cycles. AMZs correspond to an intermediate state between two "end points" represented by fully oxic systems and fully sulfidic systems. Modern and ancient AMZs and sulfidic basins are chemically and functionally related. Global change is affecting the magnitude of biogeochemical fluxes and ocean chemical inventories, leading to shifts in AMZ chemistry and biology that are likely to continue well into the future.

Microbial oceanography of anoxic oxygen minimum zones

PubMed Central

Ulloa, Osvaldo; Canfield, Donald E.; DeLong, Edward F.; Letelier, Ricardo M.; Stewart, Frank J.

2012-01-01

Vast expanses of oxygen-deficient and nitrite-rich water define the major oxygen minimum zones (OMZs) of the global ocean. They support diverse microbial communities that influence the nitrogen economy of the oceans, contributing to major losses of fixed nitrogen as dinitrogen (N2) and nitrous oxide (N2O) gases. Anaerobic microbial processes, including the two pathways of N2 production, denitrification and anaerobic ammonium oxidation, are oxygen-sensitive, with some occurring only under strictly anoxic conditions. The detection limit of the usual method (Winkler titrations) for measuring dissolved oxygen in seawater, however, is much too high to distinguish low oxygen conditions from true anoxia. However, new analytical technologies are revealing vanishingly low oxygen concentrations in nitrite-rich OMZs, indicating that these OMZs are essentially anoxic marine zones (AMZs). Autonomous monitoring platforms also reveal previously unrecognized episodic intrusions of oxygen into the AMZ core, which could periodically support aerobic metabolisms in a typically anoxic environment. Although nitrogen cycling is considered to dominate the microbial ecology and biogeochemistry of AMZs, recent environmental genomics and geochemical studies show the presence of other relevant processes, particularly those associated with the sulfur and carbon cycles. AMZs correspond to an intermediate state between two “end points” represented by fully oxic systems and fully sulfidic systems. Modern and ancient AMZs and sulfidic basins are chemically and functionally related. Global change is affecting the magnitude of biogeochemical fluxes and ocean chemical inventories, leading to shifts in AMZ chemistry and biology that are likely to continue well into the future. PMID:22967509

Effect of oxygen minimum zone formation on communities of marine protists

PubMed Central

Orsi, William; Song, Young C; Hallam, Steven; Edgcomb, Virginia

2012-01-01

Changes in ocean temperature and circulation patterns compounded by human activities are leading to oxygen minimum zone (OMZ) expansion with concomitant alteration in nutrient and climate active trace gas cycling. Here, we report the response of microbial eukaryote populations to seasonal changes in water column oxygen-deficiency using Saanich Inlet, a seasonally anoxic fjord on the coast of Vancouver Island British Columbia, as a model ecosystem. We combine small subunit ribosomal RNA gene sequencing approaches with multivariate statistical methods to reveal shifts in operational taxonomic units during successive stages of seasonal stratification and renewal. A meta-analysis is used to identify common and unique patterns of community composition between Saanich Inlet and the anoxic/sulfidic Cariaco Basin (Venezuela) and Framvaren Fjord (Norway) to show shared and unique responses of microbial eukaryotes to oxygen and sulfide in these three environments. Our analyses also reveal temporal fluctuations in rare populations of microbial eukaryotes, particularly anaerobic ciliates, that may be of significant importance to the biogeochemical cycling of methane in OMZs. PMID:22402396

Characterization of the intra-annual variability in the Oxygen Minimum Zone (OMZ) off Peru

NASA Astrophysics Data System (ADS)

Paulmier, A.; Campos, F.; Dewitte, B.; Garcon, V.; Illig, S.; Carrasco, E.; Depretz de Gesincourt, O.; Grelet, J.; Ledesma, J. A.; Maes, C.; Montes, I.; Oschlies, A.; Quispe, J.; Scouarnec, L.

2016-02-01

The Oxygen Minimum Zones (OMZs) are oceanic deoxygenated layers between 50 and 1000 meters depth, which impact climate and ecosystems at both local and global scales. In particular, associated with the most productive upwelling system (10% of the world fisheries), the OMZ off Peru has the shallowest and most intense core with the lowest O2 concentration. Little is known on O2 variability at hourly to intra-seasonal timescales in this region. Thanks to the first long term subsurface mooring deployed off Lima (12°02'S, 77°40'W) at 30 nm from the coast, this study investigates the OMZ variability. The mooring consists in an instrumented line including sensors of pressure, temperature, salinity and oxygen located at 5 depths (30, 50, 75, 145 and 160 meters below the surface) with an acquisition frequency of 15 minutes during 14 months from January 5th , 2013 until February 21th, 2014. These data collected in the framework of the trans-disciplinary AMOP project (Activity of investigation dedicated to Oxygen Minimum Zone of the eastern Pacific) allow documenting the dynamics of both the oxycline and core and of their physical forcing (e.g. waves, wind). Three main regimes of variability are reported: sub-daily (< 1 day), sub-monthly (1-30 days) and sub-seasonal (30-90 days), which corresponds to distinct physical mechanisms. Preliminary results from a high-resolution coupled model platform are presented, which serve as material for the interpretation of the data.

Nitrous oxide production in the eastern tropical South Pacific oxygen minimum zone

NASA Astrophysics Data System (ADS)

Ji, Qixing; Altabet, Mark; Arevalo-Martinez, Damian; Bange, Hermann; Ma, Xiao; Marandino, Christa; Sun, Mingshuang; Grundle, Damian

2017-04-01

Nitrous oxide (N2O) is an important climate active trace gas that contributes to both atmospheric warming and ozone destruction, and the ocean is an important source of N2O to the atmosphere. Dissolved oxygen concentrations play an important role in regulating N2O production in the ocean, such that under low oxygen conditions major shifts in the predominant production pathways (i.e. nitrification vs. denitrification) can occur and the magnitude of production may increase substantially. To this end, major oceanic oxygen minimum zones (OMZs) are responsible for a disproportionately high amount of marine N2O production. During the October 2015 ASTRA-OMZ cruise to the eastern tropical South Pacific (ETSP), one of the three major oceanic OMZs, we measured a suite of N2O parameters which included N2O concentrations, N2O production, and natural abundance N2O isotope (i.e. del 15N and del 18O) and isotopomer (i.e. 15N site-preference) signatures. Based on the results from these measurements, our presentation will demonstrate how N2O production and the different production pathways change along the oxygen concentration gradients from the oxygenated surface waters through the oxygen minimum layer. Our data could better constrain the importance of the ETSP-OMZ as source of marine N2O. Results from this work will provide insights into how N2O cycling responds to ocean deoxygenation as a result of climate change.

Metagenomic analysis of nitrogen and methane cycling in the Arabian Sea oxygen minimum zone.

PubMed

Lüke, Claudia; Speth, Daan R; Kox, Martine A R; Villanueva, Laura; Jetten, Mike S M

2016-01-01

Oxygen minimum zones (OMZ) are areas in the global ocean where oxygen concentrations drop to below one percent. Low oxygen concentrations allow alternative respiration with nitrate and nitrite as electron acceptor to become prevalent in these areas, making them main contributors to oceanic nitrogen loss. The contribution of anammox and denitrification to nitrogen loss seems to vary in different OMZs. In the Arabian Sea, both processes were reported. Here, we performed a metagenomics study of the upper and core zone of the Arabian Sea OMZ, to provide a comprehensive overview of the genetic potential for nitrogen and methane cycling. We propose that aerobic ammonium oxidation is carried out by a diverse community of Thaumarchaeota in the upper zone of the OMZ, whereas a low diversity of Scalindua-like anammox bacteria contribute significantly to nitrogen loss in the core zone. Aerobic nitrite oxidation in the OMZ seems to be performed by Nitrospina spp. and a novel lineage of nitrite oxidizing organisms that is present in roughly equal abundance as Nitrospina. Dissimilatory nitrate reduction to ammonia (DNRA) can be carried out by yet unknown microorganisms harbouring a divergent nrfA gene. The metagenomes do not provide conclusive evidence for active methane cycling; however, a low abundance of novel alkane monooxygenase diversity was detected. Taken together, our approach confirmed the genomic potential for an active nitrogen cycle in the Arabian Sea and allowed detection of hitherto overlooked lineages of carbon and nitrogen cycle bacteria.

Metagenomic analysis of nitrogen and methane cycling in the Arabian Sea oxygen minimum zone

PubMed Central

Kox, Martine A.R.; Villanueva, Laura; Jetten, Mike S.M.

2016-01-01

Oxygen minimum zones (OMZ) are areas in the global ocean where oxygen concentrations drop to below one percent. Low oxygen concentrations allow alternative respiration with nitrate and nitrite as electron acceptor to become prevalent in these areas, making them main contributors to oceanic nitrogen loss. The contribution of anammox and denitrification to nitrogen loss seems to vary in different OMZs. In the Arabian Sea, both processes were reported. Here, we performed a metagenomics study of the upper and core zone of the Arabian Sea OMZ, to provide a comprehensive overview of the genetic potential for nitrogen and methane cycling. We propose that aerobic ammonium oxidation is carried out by a diverse community of Thaumarchaeota in the upper zone of the OMZ, whereas a low diversity of Scalindua-like anammox bacteria contribute significantly to nitrogen loss in the core zone. Aerobic nitrite oxidation in the OMZ seems to be performed by Nitrospina spp. and a novel lineage of nitrite oxidizing organisms that is present in roughly equal abundance as Nitrospina. Dissimilatory nitrate reduction to ammonia (DNRA) can be carried out by yet unknown microorganisms harbouring a divergent nrfA gene. The metagenomes do not provide conclusive evidence for active methane cycling; however, a low abundance of novel alkane monooxygenase diversity was detected. Taken together, our approach confirmed the genomic potential for an active nitrogen cycle in the Arabian Sea and allowed detection of hitherto overlooked lineages of carbon and nitrogen cycle bacteria. PMID:27077014

Expansion of oxygen minimum zones may reduce available habitat for tropical pelagic fishes

NASA Astrophysics Data System (ADS)

Stramma, Lothar; Prince, Eric D.; Schmidtko, Sunke; Luo, Jiangang; Hoolihan, John P.; Visbeck, Martin; Wallace, Douglas W. R.; Brandt, Peter; Körtzinger, Arne

2012-01-01

Climate model predictions and observations reveal regional declines in oceanic dissolved oxygen, which are probably influenced by global warming. Studies indicate ongoing dissolved oxygen depletion and vertical expansion of the oxygen minimum zone (OMZ) in the tropical northeast Atlantic Ocean. OMZ shoaling may restrict the usable habitat of billfishes and tunas to a narrow surface layer. We report a decrease in the upper ocean layer exceeding 3.5mll-1 dissolved oxygen at a rate of <=1myr-1 in the tropical northeast Atlantic (0-25°N, 12-30°W), amounting to an annual habitat loss of ~5.95×1013m3, or 15% for the period 1960-2010. Habitat compression and associated potential habitat loss was validated using electronic tagging data from 47 blue marlin. This phenomenon increases vulnerability to surface fishing gear for billfishes and tunas, and may be associated with a 10-50% worldwide decline of pelagic predator diversity. Further expansion of the Atlantic OMZ along with overfishing may threaten the sustainability of these valuable pelagic fisheries and marine ecosystems.

Biological nitrogen fixation in the oxygen-minimum region of the eastern tropical North Pacific ocean.

PubMed

Jayakumar, Amal; Chang, Bonnie X; Widner, Brittany; Bernhardt, Peter; Mulholland, Margaret R; Ward, Bess B

2017-10-01

Biological nitrogen fixation (BNF) was investigated above and within the oxygen-depleted waters of the oxygen-minimum zone of the Eastern Tropical North Pacific Ocean. BNF rates were estimated using an isotope tracer method that overcame the uncertainty of the conventional bubble method by directly measuring the tracer enrichment during the incubations. Highest rates of BNF (~4 nM day -1 ) occurred in coastal surface waters and lowest detectable rates (~0.2 nM day -1 ) were found in the anoxic region of offshore stations. BNF was not detectable in most samples from oxygen-depleted waters. The composition of the N 2 -fixing assemblage was investigated by sequencing of nifH genes. The diazotrophic assemblage in surface waters contained mainly Proteobacterial sequences (Cluster I nifH), while both Proteobacterial sequences and sequences with high identities to those of anaerobic microbes characterized as Clusters III and IV type nifH sequences were found in the anoxic waters. Our results indicate modest input of N through BNF in oxygen-depleted zones mainly due to the activity of proteobacterial diazotrophs.

The oxygen minimum zone of the eastern South Pacific

NASA Astrophysics Data System (ADS)

Ulloa, Osvaldo; Pantoja, Silvio

2009-07-01

In spite of the fact that oxygen-deficient waters with ⩽20 μM of dissolved oxygen—known as oxygen minimum zones (OMZs)—occupy only ˜1% of the volume of the global ocean, they disproportionately affect global biogeochemical cycles, particularly the nitrogen cycle. The macrobiota diversity in OMZs is low, but the fauna that do inhabit these regions present special adaptations to the low-oxygen conditions. Conversely, microbial communities in the OMZ water column and sediments are abundant and phylogenetically and metabolically very diverse, and microbial processes occurring therein (e.g., denitrification, anammox, and organic matter degradation) are important for global marine biogeochemical cycles. In this introductory article, we present the collection of papers for the special volume on the OMZ of the eastern South Pacific, one of the three main open-ocean oxygen-deficient regions of the global ocean. These papers deal with aspects of regional oceanography, inorganic and organic geochemistry, ecology, and the biochemistry of micro and macro organisms—both in the plankton and in the sediments—and past changes in the fish scales preserved in the sediments bathed by OMZ waters.

NC10 bacteria in marine oxygen minimum zones

PubMed Central

Padilla, Cory C; Bristow, Laura A; Sarode, Neha; Garcia-Robledo, Emilio; Gómez Ramírez, Eddy; Benson, Catherine R; Bourbonnais, Annie; Altabet, Mark A; Girguis, Peter R; Thamdrup, Bo; Stewart, Frank J

2016-01-01

Bacteria of the NC10 phylum link anaerobic methane oxidation to nitrite denitrification through a unique O2-producing intra-aerobic methanotrophy pathway. A niche for NC10 in the pelagic ocean has not been confirmed. We show that NC10 bacteria are present and transcriptionally active in oceanic oxygen minimum zones (OMZs) off northern Mexico and Costa Rica. NC10 16S rRNA genes were detected at all sites, peaking in abundance in the anoxic zone with elevated nitrite and methane concentrations. Phylogenetic analysis of particulate methane monooxygenase genes further confirmed the presence of NC10. rRNA and mRNA transcripts assignable to NC10 peaked within the OMZ and included genes of the putative nitrite-dependent intra-aerobic pathway, with high representation of transcripts containing the unique motif structure of the nitric oxide (NO) reductase of NC10 bacteria, hypothesized to participate in O2-producing NO dismutation. These findings confirm pelagic OMZs as a niche for NC10, suggesting a role for this group in OMZ nitrogen, methane and oxygen cycling. PMID:26918666

Ocean Profile Measurements During the Seasonal Ice Zone Reconnaissance Surveys Ocean Profiles

DTIC Science & Technology

2017-01-01

repeated ocean, ice, and atmospheric measurements across the Beaufort-Chukchi sea seasonal sea ice zone (SIZ) utilizing US Coast Guard Arctic Domain...contributing to the rapid decline in summer ice extent that has occurred in recent years. The SIZ is the region between maximum winter sea ice extent and...minimum summer sea ice extent. As such, it contains the full range of positions of the marginal ice zone (MIZ) where sea ice interacts with open water

Microbial eukaryote diversity in the marine oxygen minimum zone off northern Chile.

PubMed

Parris, Darren J; Ganesh, Sangita; Edgcomb, Virginia P; DeLong, Edward F; Stewart, Frank J

2014-01-01

Molecular surveys are revealing diverse eukaryotic assemblages in oxygen-limited ocean waters. These communities may play pivotal ecological roles through autotrophy, feeding, and a wide range of symbiotic associations with prokaryotes. We used 18S rRNA gene sequencing to provide the first snapshot of pelagic microeukaryotic community structure in two cellular size fractions (0.2-1.6 μm, >1.6 μm) from seven depths through the anoxic oxygen minimum zone (OMZ) off northern Chile. Sequencing of >154,000 amplicons revealed contrasting patterns of phylogenetic diversity across size fractions and depths. Protist and total eukaryote diversity in the >1.6 μm fraction peaked at the chlorophyll maximum in the upper photic zone before declining by ~50% in the OMZ. In contrast, diversity in the 0.2-1.6 μm fraction, though also elevated in the upper photic zone, increased four-fold from the lower oxycline to a maximum at the anoxic OMZ core. Dinoflagellates of the Dinophyceae and endosymbiotic Syndiniales clades dominated the protist assemblage at all depths (~40-70% of sequences). Other protist groups varied with depth, with the anoxic zone community of the larger size fraction enriched in euglenozoan flagellates and acantharean radiolarians (up to 18 and 40% of all sequences, respectively). The OMZ 0.2-1.6 μm fraction was dominated (11-99%) by Syndiniales, which exhibited depth-specific variation in composition and total richness despite uniform oxygen conditions. Metazoan sequences, though confined primarily to the 1.6 μm fraction above the OMZ, were also detected within the anoxic zone where groups such as copepods increased in abundance relative to the oxycline and upper OMZ. These data, compared to those from other low-oxygen sites, reveal variation in OMZ microeukaryote composition, helping to identify clades with potential adaptations to oxygen-depletion.

Microbial eukaryote diversity in the marine oxygen minimum zone off northern Chile

PubMed Central

Parris, Darren J.; Ganesh, Sangita; Edgcomb, Virginia P.; DeLong, Edward F.; Stewart, Frank J.

2014-01-01

Molecular surveys are revealing diverse eukaryotic assemblages in oxygen-limited ocean waters. These communities may play pivotal ecological roles through autotrophy, feeding, and a wide range of symbiotic associations with prokaryotes. We used 18S rRNA gene sequencing to provide the first snapshot of pelagic microeukaryotic community structure in two cellular size fractions (0.2–1.6 μm, >1.6 μm) from seven depths through the anoxic oxygen minimum zone (OMZ) off northern Chile. Sequencing of >154,000 amplicons revealed contrasting patterns of phylogenetic diversity across size fractions and depths. Protist and total eukaryote diversity in the >1.6 μm fraction peaked at the chlorophyll maximum in the upper photic zone before declining by ~50% in the OMZ. In contrast, diversity in the 0.2–1.6 μm fraction, though also elevated in the upper photic zone, increased four-fold from the lower oxycline to a maximum at the anoxic OMZ core. Dinoflagellates of the Dinophyceae and endosymbiotic Syndiniales clades dominated the protist assemblage at all depths (~40–70% of sequences). Other protist groups varied with depth, with the anoxic zone community of the larger size fraction enriched in euglenozoan flagellates and acantharean radiolarians (up to 18 and 40% of all sequences, respectively). The OMZ 0.2–1.6 μm fraction was dominated (11–99%) by Syndiniales, which exhibited depth-specific variation in composition and total richness despite uniform oxygen conditions. Metazoan sequences, though confined primarily to the 1.6 μm fraction above the OMZ, were also detected within the anoxic zone where groups such as copepods increased in abundance relative to the oxycline and upper OMZ. These data, compared to those from other low-oxygen sites, reveal variation in OMZ microeukaryote composition, helping to identify clades with potential adaptations to oxygen-depletion. PMID:25389417

Feeding ecology of the copepod Lucicutia aff. L. grandis near the lower interface of the Arabian Sea oxygen minimum zone

NASA Astrophysics Data System (ADS)

Gowing, Marcia M.; Wishner, Karen F.

Feeding ecology of the calanoid copepod Lucicutia aff. L. grandis collected in the Arabian Sea at one station during the Spring Intermonsoon and during the Southwest Monsoon of 1995 was studied with transmission electron microscopy of gut-contents. Highest abundances of these animals occurred from ˜400 to 1100 m, near the lower interface of the oxygen minimum zone and at the inflection point where oxygen starts to increase. We expected that their gut-contents would include particles and cells that had sunk relatively undegraded from surface waters as well as those from within the oxygen minimum zone, and that gut-contents would differ between the Spring Intermonsoon and the more productive SW Monsoon. Overall, in both seasons Lucicutia aff. L. grandis was omnivorous, and consumed a variety of detrital particles, prokaryotic and eukaryotic autotrophs, gram-negative bacteria including metal-precipitating bacteria, aggregates of probable gram-positive bacteria, microheterotrophs, virus-like particles and large virus-like particles, as well as cuticle and cnidarian tissue. Few significant differences in types of food consumed were seen among life stages within or among various depth zones. Amorphous, unidentifiable material was significantly more abundant in guts during the Spring Intermonsoon than during the late SW Monsoon, and recognizable cells made up a significantly higher portion of gut-contents during the late SW Monsoon. This is consistent with the Intermonsoon as a time when organic material is considerably re-worked by the surface water microbial loop before leaving the euphotic zone. In both seasons Lucicutia aff. L. grandis had consumed what appeared to be aggregates of probable gram-positive bacteria, similar to those we had previously found in gut-contents of several species of zooplankton from the oxygen minimum zone in the eastern tropical Pacific. By intercepting sinking material, populations of Lucicutia aff. L. grandis act as a filter for carbon sinking to the sea floor. They also modify sinking carbon in several ways: enhancing pelagic-abyssal coupling of carbon from cyanobacteria, eliminating part of the deep-sea microbial loop by direct consumption of bacterial aggregates, and redistributing particulate manganese and iron from association with suspended cells or aggregates to containment in rapidly sinking fecal pellets. Lucicutia aff. L. grandis can be viewed as representative of deep-dwelling detritivorous mesozooplankton. Assessing the magnitude of the effects of such organisms on carbon flux in the Arabian Sea will require data on feeding rates.

Strengthening of the Eastern Tropical North Pacific Oxygen Minimum Zone during Marine Isotope Stage 3 despite the intensification of Dansgaard-Oeschger and Heinrich events

NASA Astrophysics Data System (ADS)

Choumiline, K.; Lyons, T. W.; Carriquiry, J. D.; Perez-Cruz, L. L.; Raiswell, R.; Beaufort, L.; Rafter, P. A.

2017-12-01

The Eastern Tropical North Pacific (ETNP) is sensitive to climatic changes that either strengthen or weaken the Oxygen Minimum Zone (OMZ). Paleoproxy and model evidence indicate that the shifts from cold stadials (LGM, MIS4) to warm interstadials are often accompanied by sudden sea level rise, intensification of marine productivity and enhanced oceanic anoxia. These intermediate states remain enigmatic, especially with overimposed Dansgaard-Oeschger (DO) oscillations and Heinrich events. We present a high-resolution reconstruction of productivity (Corg, P, Cd, Ni, Ba) and redox (Fe/Al, FeHR/FeT, Mo, V, U) of the ETNP over the last glacial period with special emphasis on the MIS3 transition (roughly 30-60 kyr BP). We found that the OMZ was profoundly anoxic throughout that interval, based on marine sedimentary paleoproxy records. Our spatiotemporal reconstruction shows that the geographic extent of enhanced deoxygenation during the MIS3 not only encompassed the Gulf of California (Alfonso, La Paz and Guaymas Basin), Pacific margin off Mazatlan and Baja California (Soledad Basin), but also California (Santa Barbara Basin) and western Canadian margins. The OMZ achieved its peak strength during 45-60 kyr BP exposed by the highest Mo (35 mg/kg), V (120 mg/kg) and U (13 mg/kg) values, and then commenced weakening and contracting onto the LGM. Marine productivity was also reportedly high during the MIS3, mostly mirroring the redox signals. In contrast, MIS4 and LGM were well-oxygenated and depleted in redox proxies (as low as 4 mg/kg of Mo, 60 mg/kg of V and 4 mg/kg of U). Despite of enhanced anoxia or even euxinia during the MIS3, the effect of cold D-O and Heinrich events was unmistakable. Most of these perturbations corresponded to low export production (low Corg, P, Cd/Al, Ni/Al and Ba/Al) and good ventilation of the ETNP. The recoveries after these events were relatively quick and anoxic conditions were re-established within hundreds of years. As of now, there is no definitive explanation for the mechanisms by which D-O and Heinrich events exert changes in the intensity of ETNP OMZs during the MIS3, but a consensus is building. We will discuss the most popular hypotheses that involve changes in atmospheric and thermohaline circulation, as well as variability in deep-sea nutrients.

Phylogenetic analyses and nitrate-reducing activity of fungal cultures isolated from the permanent, oceanic oxygen minimum zone of the Arabian Sea.

PubMed

Manohar, Cathrine Sumathi; Menezes, Larissa Danielle; Ramasamy, Kesava Priyan; Meena, Ram M

2015-03-01

Reports on the active role of fungi as denitrifiers in terrestrial ecosystems have stimulated an interest in the study of the role of fungi in oxygen-deficient marine systems. In this study, the culturable diversity of fungi was investigated from 4 stations within the permanent, oceanic, oxygen minimum zone of the Arabian Sea. The isolated cultures grouped within the 2 major fungal phyla Ascomycota and Basidiomycota; diversity estimates in the stations sampled indicated that the diversity of the oxygen-depleted environments is less than that of mangrove regions and deep-sea habitats. Phylogenetic analyses of 18S rRNA sequences revealed a few divergent isolates that clustered with environmental sequences previously obtained by others. This is significant, as these isolates represent phylotypes that so far were known only from metagenomic studies and are of phylogenetic importance. Nitrate reduction activity, the first step in the denitrification process, was recorded for isolates under simulated anoxic, deep-sea conditions showing ecological significance of fungi in the oxygen-depleted habitats. This report increases our understanding of fungal diversity in unique, poorly studied habitats and underlines the importance of fungi in the oxygen-depleted environments.

On the subduction of oxygenated surface water in submesoscale cold filaments off Peru.

NASA Astrophysics Data System (ADS)

Thomsen, Soeren; Kanzow, Torsten; Colas, Francois; Echevin, Vincent; Krahmann, Gerd

2015-04-01

The Peruvian upwelling regime is characterized by pronounced submesoscale variability including filaments and sharp density fronts. Submesoscale frontal processes can drive large vertical velocities and enhance vertical tracer fluxes in the upper ocean. The associated high temporal and spatial variability poses a large challenge to observational approaches targeting submesoscale processes. In this study the role of submesoscale processes for both the ventilation of the near-coastal oxygen minimum zone off Peru and the physical-biogeochemical coupling at these scales is investigated. For our study we use satellite based sea surface temperature measurements in combination with multiple high-resolution glider observations of temperature, salinity, oxygen and chlorophyll fluorescence carried out in January and February 2013 off Peru near 14°S during active upwelling. Additionally, high-resolution regional ocean circulation model outputs (ROMS) are analysed. At the beginning of our observations a previously upwelled, productive and highly oxygenated body of water is found within the mixed layer. Subsequently, a cold filament forms and the waters are moved offshore. After the decay of the filament and the relaxation of the upwelling front, the oxygen enriched surface water is found within the previously less oxygenated thermocline suggesting the occurrence of frontal subduction. A numerical model simulation is used to analyse the evolution of passive tracers and Lagrangian floats within several upwelling filaments, whose vertical structure and hydrographic properties agree well with the observations. The simulated temporal evolution of the tracers and floats support our interpretation that the subduction of previously upwelled water indeed occurs within cold filaments off Peru. Filaments are common features within eastern boundary upwelling systems, which all encompass large oxygen minimum zones. However, most state of-the-art large and regional scale physical-biogeochemical ocean models do not resolve submesoscale filaments and the associated downward transport of oxygen and other solutes. Even if the observed subduction event only reaches into the still oxygenated thermocline the associated ventilation mechanism likely influences the shape and depth of the upper boundary of oxygen minimum zones, which would probably be even shallower without this process.

Investigation of complex slow slip behavior along the Hikurangi subduction zone with earthquake simulator RSQSim

NASA Astrophysics Data System (ADS)

Colella, H.; Ellis, S. M.; Williams, C. A.

2015-12-01

The Hikurangi subduction zone (New Zealand) is one of many subudction zones that exhibit slow slip behavior. Geodetic observations along the Hikurangi subduction zone are unusual in that not only does the subduction zone exhibit periodic slow slip events at "typical" subduction-zone depths of 25-50 km along the southern part of the margin, but also much shallower depths of 8-15 km along the northern part of the margin. Furthermore, there is evidence for interplay between slow slip events at these different depth ranges (between the deep and shallow events) along the central part of the margin, and some of the slow slip behavior is observed along regions of the interface that were previously considered locked, which raises questions about the slip behavior of this region. This study employs the earthquake simulator, RSQSim, to explore variations in the effective normal stress (i.e., stress after the addition of pore fluid pressures) and the frictional instability necessary to generate the complex slow slip events observed along the Hikurangi margin. Preliminary results suggest that to generate slow slip events with similar recurrence intervals to those observed the effective normal stress (MPa) is 3x higher in the south than the north, 6-9MPa versus 2-3MPa, respectively. Results also suggest that, at a minimum, that some overlap along the central margin must exist between the slow slip sections in the north and south to reproduce the types of slip events observed along the Hikurangi subduction zone. To further validate the results from the simulations, Okada solutions for surface displacements will be compared to geodetic solution to more accurately constrain the areas in which slip behavior varies and the cause(s) for the variation(s).

Predicting Biological Information Flow in a Model Oxygen Minimum Zone

NASA Astrophysics Data System (ADS)

Louca, S.; Hawley, A. K.; Katsev, S.; Beltran, M. T.; Bhatia, M. P.; Michiels, C.; Capelle, D.; Lavik, G.; Doebeli, M.; Crowe, S.; Hallam, S. J.

2016-02-01

Microbial activity drives marine biochemical fluxes and nutrient cycling at global scales. Geochemical measurements as well as molecular techniques such as metagenomics, metatranscriptomics and metaproteomics provide great insight into microbial activity. However, an integration of molecular and geochemical data into mechanistic biogeochemical models is still lacking. Recent work suggests that microbial metabolic pathways are, at the ecosystem level, strongly shaped by stoichiometric and energetic constraints. Hence, models rooted in fluxes of matter and energy may yield a holistic understanding of biogeochemistry. Furthermore, such pathway-centric models would allow a direct consolidation with meta'omic data. Here we present a pathway-centric biogeochemical model for the seasonal oxygen minimum zone in Saanich Inlet, a fjord off the coast of Vancouver Island. The model considers key dissimilatory nitrogen and sulfur fluxes, as well as the population dynamics of the genes that mediate them. By assuming a direct translation of biocatalyzed energy fluxes to biosynthesis rates, we make predictions about the distribution and activity of the corresponding genes. A comparison of the model to molecular measurements indicates that the model explains observed DNA, RNA, protein and cell depth profiles. This suggests that microbial activity in marine ecosystems such as oxygen minimum zones is well described by DNA abundance, which, in conjunction with geochemical constraints, determines pathway expression and process rates. Our work further demonstrates how meta'omic data can be mechanistically linked to environmental redox conditions and biogeochemical processes.

Lithospheric strength variations as a control on new plate boundaries: examples from the northern Red Sea region

NASA Astrophysics Data System (ADS)

Steckler, Michael S.; ten Brink, Uri S.

1986-08-01

The complex plate boundary between Arabia and Africa at the northern end of the Red Sea includes the Gulf of Suez rift and the Gulf of Aqaba—Dead Sea transform. Geologic evidence indicates that during the earliest phase of rifting the Red Sea propagated NNW towards the Mediterranean Sea creating the Gulf of Suez. Subsequently, the majority of the relative movement between the plates shifted eastward to the Dead Sea transform. We propose that an increase in the strength of the lithosphere across the Mediterranean continental margin acted as a barrier to the propagation of the rift. A new plate boundary, the Dead Sea transform formed along a zone of minimum strength. We present an analysis of lithospheric strength variations across the Mediterranean continental margin. The main factors controlling these variations are the geotherm, crustal thickness and composition, and sediment thickness. The analysis predicts a characteristic strength profile at continental margins which consists of a marked increase in strength seaward of the hinge zone and a strength minimum landward of the hinge zone. This strength profile also favors the creation of thin continental slivers such as the Levant west of the Dead Sea transform and the continental promontory containing Socotra Island at the mouth of the Gulf of Aden. Calculations of strength variations based on changes of crustal thickness, geotherm and sediment thickness can be extended to other geologic settings as well. They can explain the location of rerifting events at intracratonic basins, of backarc basins and of major continental strike-slip zones.

Response of benthic foraminifera to phytodetritus in the eastern Arabian Sea under low oxygen conditions

NASA Astrophysics Data System (ADS)

Enge, Annekatrin; Wukovits, Julia; Wanek, Wolfgang; Watzka, Margarete; Witte, Ursula; Hunter, William; Heinz, Petra

2016-04-01

At water depths between 100 and 1500 m a permanent Oxygen Minimum Zone (OMZ) impinges on the sea floor in the eastern Arabian Sea, exposing benthic organisms to anoxic to suboxic conditions. The flux of organic matter to the sea floor is relatively high at these depths but displays seasonal variation. Deposition of relatively fresh phytodetrital material (phytoplankton remains) can occur within a short period of time after monsoon periods. Several organism groups including foraminifera are involved to different extent in the processing of phytodetritus in the OMZs of the northern Arabian Sea. A series of in situ feeding experiments were performed to study the short-term processing (< 11 days) of organic carbon, nitrogen and nutritional demands of foraminifera at different oxygen concentrations on the continental margin in the eastern Arabian Sea. For the experiments, a single pulse of isotopically labeled phytodetritus was added to the sediment along a depth transect (540-1100 m) on the Indian Margin, covering the OMZ core and the lower OMZ boundary region. Uptake of phytodetritus within 4 days shows the relevance of phytodetritus as food source for foraminifera. Lower content of phytodetrital carbon recorded in foraminifera from more oxygenated depths shows greater food uptake by foraminifera in the OMZ core than in the OMZ boundary region. The foraminiferal assemblage living under almost anoxic conditions in the OMZ core is dominated by species typically found in eutroph environments (such as Uvigerinids) that are adapted to high flux of organic matter. The elevated carbon uptake can also result from missing food competition by macrofauna or from greater energy demand in foraminifera to sustain metabolic processes under hypoxic stress. Variable levels and ratios of phytodetrital carbon and nitrogen indicate specific nutritional demands and storage of food-derived nitrogen in some foraminifera species under near anoxia where the mean phytodetrital nitrogen content in foraminifera was elevated. In summary, foraminifera dominate the short-term processing of phytodetritus by fauna in the OMZ core but are less important in the lower OMZ boundary region of the Indian margin as a result of biological interactions and changes in the distribution of individual foraminiferal species.

Zooplankton Responses to Low-Oxygen Condition upon a Shallow Oxygen Minimum Zone in the Upwelling Region off Chile

NASA Astrophysics Data System (ADS)

Hidalgo, P.; Escribano, R.

2015-12-01

A shallow oxygen minimum zone (OMZ) is a critical component in the coastal upwelling ecosystem off Chile. This OMZ causes oxygen-deficient water entering the photic layer and affecting plankton communities having low tolerance to hypoxia. Variable, and usually species-dependent, responses of zooplankton to hypoxia condition can be found. Most dominant species avoid hypoxia by restricting their vertical distribution, while others can temporarily enter and even spent part of their life cycle within the OMZ. Whatever the case, low-oxygen conditions appear to affect virtually all vital rates of zooplankton, such as mortality, fecundity, development and growth and metabolism, and early developmental stages seem more sensitive, with significant consequences for population and community dynamics. For most study cases, these effects are negative at individual and population levels. Observations and predictions upon increasing upwelling intensity over the last 20-30 years indicate a gradual shoaling of the OMZ, and so that an expected enhancement of these negative effects of hypoxia on the zooplankton community. Unknown processes of adaptation and community-structure adjustments are expected to take place with uncertain consequences for the food web of this highly productive eastern boundary current ecosystem.

Inter-decadal changes in the intensity of the Oxygen Minimum Zone off Concepción, Chile (~ 36° S) over the last century

NASA Astrophysics Data System (ADS)

Srain, B.; Pantoja, S.; Sepúlveda, J.; Lange, C. B.; Muñoz, P.; Summons, R. E.; McKay, J.; Salamanca, M.

2015-04-01

We reconstructed oxygenation changes in the Oxygen Minimum Zone of the upwelling ecosystem off Concepción (36° S), Chile, using inorganic and organic proxies in a sediment core covering the last ca. 110 years of sedimentation in this area. Authigenic enrichments of Mo, U and Cd were observed between ca. 1935-1971 CE indicating a prolonged period of more reduced conditions in bottom waters and surface sediments. Significant positive correlations (p < 0.05; Spearman) between redox sensitive metals, algal sterols, biomarkers of anaerobic microorganisms, and archaeal glycerol dialkyl glycerol tetraether indicated a coupling among bottom water oxygen depletion, and increased primary and export production, suggesting that the period with low O2 of ca. 35 years, follows low frequency inter-decadal variation of the Pacific Decadal Oscillation, which may have resulted in O2 depletion over the entire continental shelf off Concepción. Taken together with the concurrent increase in sedimentary molecular indicators of anaerobic microbes allow us to suggest that the prokaryote community has been influenced by changes in oxygenation of the water column.

A Phosphate Minimum in the Oxygen Minimum Zone (OMZ) off Peru

NASA Astrophysics Data System (ADS)

Paulmier, A.; Giraud, M.; Sudre, J.; Jonca, J.; Leon, V.; Moron, O.; Dewitte, B.; Lavik, G.; Grasse, P.; Frank, M.; Stramma, L.; Garcon, V.

2016-02-01

The Oxygen Minimum Zone (OMZ) off Peru is known to be associated with the advection of Equatorial SubSurface Waters (ESSW), rich in nutrients and poor in oxygen, through the Peru-Chile UnderCurrent (PCUC), but this circulation remains to be refined within the OMZ. During the Pelágico cruise in November-December 2010, measurements of phosphate revealed the presence of a phosphate minimum (Pmin) in various hydrographic stations, which could not be explained so far and could be associated with a specific water mass. This Pmin, localized at a relatively constant layer ( 20<220 m) and with a patchy distribution mainly between 10 and 16°S, is confirmed and characterized in details from the complementary hydrological data acquired during the German Meteor cruise M77 (Legs 3 and 4, January-February 2009). The significant Pmin present an intense minimum with a mean vertical phosphate decrease of 0.6 µM but highly variable between 0.1 and 2.2 µM. In average, these Pmin are associated with a predominant mixing of SubTropical Under- and Surface Waters (STUW and STSW: 20 and 40%, respectively) within ESSW ( 25%), complemented evenly by overlying (ESW, TSW: 8%) and underlying waters (AAIW, SPDW: 7%). The hypotheses and mechanisms leading to the Pmin formation in the OMZ are further explored and discussed, considering the physical regional contribution associated with various circulation pathways ventilating the OMZ and the local biogeochemical contribution including the potential diazotrophic activity.

Sink or link? The bacterial role in benthic carbon cycling in the Arabian Sea's oxygen minimum zone

NASA Astrophysics Data System (ADS)

Pozzato, L.; Van Oevelen, D.; Moodley, L.; Soetaert, K.; Middelburg, J. J.

2013-11-01

The bacterial loop, the consumption of dissolved organic matter (DOM) by bacteria and subsequent transfer of bacterial carbon to higher trophic levels, plays a prominent role in pelagic food webs. However, its role in sedimentary ecosystems is not well documented. Here we present the results of isotope tracer experiments performed under in situ oxygen conditions in sediments from inside and outside the Arabian Sea's oxygen minimum zone (OMZ) to study the importance of the microbial loop in this setting. Particulate organic matter, added as phytodetritus, was processed by bacteria, protozoa and metazoans, while dissolved organic matter was processed only by bacteria and there was very little, if any, transfer to higher trophic levels within the 7 day experimental period. This lack of significant transfer of bacterial-derived carbon to metazoan consumers indicates that the bacterial loop is rather inefficient, in sediments both inside and outside the OMZ. Moreover, metazoans directly consumed labile particulate organic matter resources and thus competed with bacteria for phytodetritus.

Sink or link? The bacterial role in benthic carbon cycling in the Arabian sea oxygen minimum zone

NASA Astrophysics Data System (ADS)

Pozzato, L.; Van Oevelen, D.; Moodley, L.; Soetaert, K.; Middelburg, J. J.

2013-06-01

The bacterial loop, the consumption of dissolved organic matter (DOM) by bacteria and subsequent transfer of bacterial carbon to higher trophic levels, plays a prominent role in pelagic aquatic food webs. However, its role in sedimentary ecosystems is not well documented. Here we present the results of isotope tracer experiments performed under in situ oxygen conditions in sediments from inside and outside the Arabian Sea Oxygen Minimum Zone (OMZ) to study the importance of the microbial loop in this setting. Particulate organic matter, added as phytodetritus, was processed by bacteria, protozoa and metazoans, while dissolved organic matter was processed only by bacteria and there was very little, if any, transfer to higher trophic levels within the experimental period. This lack of significant transfer of bacterial-derived carbon to metazoan consumers indicates that the bacterial loop is rather inefficient in these sediments. Moreover, metazoans directly consume labile particulate organic matter resources and thus compete with bacteria for phytodetritus.

Functioning of the Ocean Biological Pump in the Oxygen Minimum Zones

NASA Astrophysics Data System (ADS)

Moore, J. K.

2015-12-01

Oxygen minimum zones occur at mid-depths in the water column in regions with weak ventilation and relatively high export of organic matter from surface waters. They are important ocean for ocean biogeochemistry, and potentially for climate, as sites of water column denitrification and nitrous oxide production. Denitrification is the dominant loss process for fixed nitrogen in the oceans, and can thus affect the ocean inventory of this key nutrient. Denitrification is less energetically efficient than oxic remineralization. Larger zooplankton, which feed on sinking particles, are not present in the lowest oxygen waters. Both of these factors suggest that the remineralization of sinking particles may be slower within the OMZs than in more oxygenated waters. There is limited field evidence and from some modeling studies that remineralization is slower (remineralization length scales are longer) within OMZ waters. In this talk, I will present results from the Community Earth System Model (CESM) ocean component attempting to test this hypothesis. Comparing model results with observed ocean biogeochemical tracer distributions (i.e., phosphate, oxygen), I will examine whether slower remineralization within low oxygen waters provides a better match between simulated and observed tracer distributions. Longer remineralization length scales under low oxygen conditions would provide a negative feedback under global warming scenarios. The biological pump would transfer organic materials to depth more efficiently as ocean oxygen concentrations decline and the OMZs expand.

Oxygen Pathways and Budget for the Eastern South Pacific Oxygen Minimum Zone

NASA Astrophysics Data System (ADS)

Llanillo, P. J.; Pelegrí, J. L.; Talley, L. D.; Peña-Izquierdo, J.; Cordero, R. R.

2018-03-01

Ventilation of the eastern South Pacific Oxygen Minimum Zone (ESP-OMZ) is quantified using climatological Argo and dissolved oxygen data, combined with reanalysis wind stress data. We (1) estimate all oxygen fluxes (advection and turbulent diffusion) ventilating this OMZ, (2) quantify for the first time the oxygen contribution from the subtropical versus the traditionally studied tropical-equatorial pathway, and (3) derive a refined annual-mean oxygen budget for the ESP-OMZ. In the upper OMZ layer, net oxygen supply is dominated by tropical-equatorial advection, with more than one-third of this supply upwelling into the Ekman layer through previously unevaluated vertical advection, within the overturning component of the regional Subtropical Cell (STC). Below the STC, at the OMZ's core, advection is weak and turbulent diffusion (isoneutral and dianeutral) accounts for 89% of the net oxygen supply, most of it coming from the oxygen-rich subtropical gyre. In the deep OMZ layer, net oxygen supply occurs only through turbulent diffusion and is dominated by the tropical-equatorial pathway. Considering the entire OMZ, net oxygen supply (3.84 ± 0.42 µmol kg-1 yr-1) is dominated by isoneutral turbulent diffusion (56.5%, split into 32.3% of tropical-equatorial origin and 24.2% of subtropical origin), followed by isoneutral advection (32.0%, split into 27.6% of tropical-equatorial origin and 4.4% of subtropical origin) and dianeutral diffusion (11.5%). One-quarter (25.8%) of the net oxygen input escapes through dianeutral advection (most of it upwelling) and, assuming steady state, biological consumption is responsible for most of the oxygen loss (74.2%).

Effects of stratification, organic matter remineralization and bathymetry on summertime oxygen distribution in the Bohai Sea, China

NASA Astrophysics Data System (ADS)

Zhao, Hua-De; Kao, Shuh-Ji; Zhai, Wei-Dong; Zang, Kun-Peng; Zheng, Nan; Xu, Xue-Mei; Huo, Cheng; Wang, Ju-Ying

2017-02-01

The Bohai Sea, a semi-enclosed shallow coastal sea with increasing nutrient loads, is susceptible to seasonal oxygen deficiency in its bottom waters, similar to many other areas of the worlds' coastal oceans. We examined the dissolved oxygen (DO) distribution in the Bohai during August 2014. Two oxygen-deficient zones (DO<92 μmol O2 kg-1) with a minimum DO of 80 μmol O2 kg-1 were documented. The area and volume of bottom oxygen-deficient water were 756 km2 and 7820×106 m3, with a mean thickness of 10 m. Thus, the Bohai is second to the Changjiang estuary in its oxygen-deficient zone size among China's coastal waters. We classified three hydrographic areas that dictated the distribution of DO: 1) the shallow well-mixed zone; 2) the laterally-open stratified zone; and 3) the isolated stratified zone. Vertical mixing dominated the shallow well-mixed zone leading to homogeneous DO in the water column. The laterally-open stratified zone was influenced by high DO and low temperature inflow through the northern Bohai Strait. The isolated stratified zones, i.e., the low DO areas, were found in depressed regions. The stoichiometric relationship between DO consumption and the corresponding enrichment of dissolved inorganic carbon suggested that the aerobic respiration of organic matter contributed to the oxygen-depletion in the isolated stratified zone. Overall, the bottom DO distribution in the Bohai system was controlled largely by lateral DO exchange modified by bathymetric features, while superimposed on that was the build-up of stratification caused by summer heating and the remineralization of organics sourced from spring phytoplankton bloom.

The trophic and metabolic pathways of foraminifera in the Arabian Sea: evidence from cellular stable isotopes

NASA Astrophysics Data System (ADS)

Jeffreys, R. M.; Fisher, E. H.; Gooday, A. J.; Larkin, K. E.; Wolff, G. A.; Billett, D. S. M.

2014-12-01

The Arabian Sea is a region of elevated productivity with the highest globally recorded fluxes of particulate organic matter (POM) to the deep ocean, providing an abundant food source for fauna at the seafloor. However, benthic communities are also strongly influenced by an intense oxygen minimum zone (OMZ), which impinges on the continental slope at bathyal depths. We compared the trophic ecology of foraminifera on the Oman and Pakistan margins of the Arabian Sea (140-3185 m water depth). Organic carbon concentrations of surficial sediments were higher on the Oman margin (3.32 ± 1.4%) compared to the Pakistan margin (2.45 ± 1.1%) and sedimentary organic matter (SOM) quality estimated from the Hydrogen Index was also higher on the Oman margin (300-400 mg HC (mg TOC)-1) compared to the Pakistan margin (<250 mg HC (mg TOC)-1). δ13C and δ15N values of sediments were similar on both margins (-20 and 8‰, respectively). Stable isotope analysis (SIA) showed that foraminiferal cells had a wide range of δ13C values (-25.5 to -11.5‰), implying that they utilise multiple food sources; indeed δ13C values varied between depths, foraminiferal types and between the two margins. Foraminifera had broad ranges in δ15N values (-7.8 to 27.3‰). The enriched values suggest that some species may store nitrate to utilise in respiration; this was most notable on the Pakistan margin. Depleted foraminiferal δ15N values were identified on both margins, particularly the Oman margin, and may reflect feeding on chemosynthetic bacteria. We suggest that differences in productivity regimes between the two margins may be responsible for the differences observed in foraminiferal isotopic composition. In addition, at the time of sampling, whole jellyfish carcasses (Crambionella orsini) and a carpet of jelly detritus were observed across the Oman margin transect. Associated chemosynthetic bacteria may have provided an organic-rich food source for foraminifera at these sites. Our data suggest that foraminifera in OMZ settings can utilise a variety of food sources and metabolic pathways to meet their energetic demands.

The cycling of iron, zinc and cadmium in the North East Pacific Ocean - Insights from stable isotopes

NASA Astrophysics Data System (ADS)

Conway, Tim M.; John, Seth G.

2015-09-01

Dissolved stable isotope ratios of the transition metals provide useful information, both for understanding the cycling of these bioactive trace elements through the oceans, and tracing their marine sources and sinks. Here, we present seawater dissolved Fe, Zn and Cd concentration and stable isotope ratio (δ56Fe, δ66Zn, and δ114Cd) profiles from two stations in the Pacific Ocean, the SAFe Station (30°N 140°W) in the subtropical North East Pacific from the GEOTRACES IC2 cruise, and the marginal San Pedro Basin (33.8°N 118.4°W) within the South California Bight. These data represent, to our knowledge, the first full-water column profiles for δ66Zn and δ56Fe from the open-ocean North Pacific, and the first observations of dissolved δ66Zn and δ114Cd in a low-oxygen marginal basin. At the SAFe station, δ56Fe is isotopically lighter throughout the water column (-0.6 to +0.1‰, relative to IRRM-014) compared to the North Atlantic, suggesting significant differences in Fe sources or Fe cycling between these two ocean basins. A broad minimum in δ56Fe associated with the North Pacific oxygen minimum zone (OMZ; <75 μmol kg-1 dissolved oxygen; ∼550-2000 m depth) is consistent with reductive sediments along the California margin being an important source of dissolved Fe to the North Pacific. Other processes which may influence δ56Fe at SAFe include biological cycling in the upper ocean, and input of Fe from hydrothermal vents and oxic sediments below the OMZ. Zn and Cd concentration profiles at both stations broadly match the distribution of the macronutrients silicate and phosphate, respectively. At SAFe, δ114Cd increases towards the surface, reflecting the biological preference for assimilation of lighter Cd isotopes, while negative Cd∗ (-0.12) associated with low oxygen waters supports the recently proposed hypothesis of water-column CdS precipitation. In contrast to δ114Cd, δ66Zn at SAFe decreases towards the surface ocean, perhaps due to scavenging of isotopically heavy Zn, while at intermediate depths δ66Zn provides further evidence of a mid-depth dissolved δ66Zn maximum. We suggest this may be a global feature of Zn biogeochemistry related to either regeneration of heavy adsorbed Zn, or to ZnS formation and removal within the water column. Data from San Pedro shows that anoxic sediments can be a source of isotopically light Zn to the water column (δ66Zn of ∼-0.3‰ relative to JMC Lyon), though evidence of this signal is not observed being transported to SAFe. Within North Pacific Intermediate Water at SAFe (NPIW; ∼500 m) elevated Cd∗ and Zn∗ and a focused minimum in δ56Fe suggest possible transport of Fe, Zn, and Cd over thousands of km from subpolar waters, meaning that NPIW may have a strong influence on the subsurface distribution of trace metals throughout the North Pacific.

Comparative geochemistry of Indian margin (Arabian Sea) sediments: Estuary to continental slope.

NASA Astrophysics Data System (ADS)

Cowie, Greg; Mowbray, Stephen; Kurian, Siby; Sarkar, Amit; White, Carol; Anderson, Amy; Vergnaud, Bianca; Johnstone, Gisele; Brear, Samuel; Woulds, Clare; Naqvi, Wajih; Kitazato, Hiroshi

2014-05-01

Factors controlling the distribution of organic matter in the Arabian Sea have been the subject of much research and debate ever since organic-rich slope deposits were associated with the mid-water oxygen minimum zone (OMZ) However, the debate remains open, and numerous interacting factors have been invoked as important controls. A limitation of most previous studies is that they have been restricted to limited portions of the margin, and have not included molecular-level tracers that allow distinction of organic matter (OM) source and degradation state as factors in OM distribution. We report results from sites across the Indian margin of the Arabian Sea, which were analysed for carbon and nitrogen compositions (elemental and isotopic), grain size and indices of OM source and degradation state. Site locations ranged from the Mandovi/Zuari estuaries to depths of ~2000m on the continental slope, thus spanning both the semi-permanent OMZ on the upper slope (~200-1300m) and the seasonal hypoxic zone that impinges on the shelf. Source indices showed mixed marine and terrigenous OM within the estuaries, but overwhelming predominance (80%+) of marine OM on the shelf and slope, even in nearshore deposits. Thus, riverine OM is heavily diluted or efficiently remineralised within or immediately offshore of the estuaries. Any terrigenous OM that is exported appears to be retained in nearshore muds; lignin phenols indicate that the small terrigenous OM content of slope sediments is of different origin, potentially from rivers to the north. Organic C contents of surface shelf and slope sediments varied from <0.5 wt% in relict shelf sands to a maximum of >7 wt% at upper slope sites within the OMZ, then decreasing to ≤1wt% at 2000m. However, major variability (~5 wt%) occured within the OMZ at sites with near-identical depths and bottom-water oxygen. A strong relationship between organic C and grain size was seen for OMZ sediments, but lower C loadings were found for sites on the shelf and below the OMZ. Diagenetic indices confirmed that lower C content below the OMZ is associated with greater extent of OM degradation, but that C-poor shelf sediments are not consistently more degraded than those within the OMZ. Together, results indicate that OM enrichment on the upper slope, where it occurs, can be explained by winnowing or other physical processes on the shelf combined with progressive OM degradation with increasing oxygen exposure below the OMZ. Reduced oxygen exposure may contribute to observed OM enrichment with the OMZ, but hydrodynamic processes are the overriding control on sediment OM distribution, even within the OMZ.

Effect of oxygen minimum zone formation on communities of marine protists.

PubMed

Orsi, William; Song, Young C; Hallam, Steven; Edgcomb, Virginia

2012-08-01

Changes in ocean temperature and circulation patterns compounded by human activities are leading to oxygen minimum zone (OMZ) expansion with concomitant alteration in nutrient and climate active trace gas cycling. Here, we report the response of microbial eukaryote populations to seasonal changes in water column oxygen-deficiency using Saanich Inlet, a seasonally anoxic fjord on the coast of Vancouver Island British Columbia, as a model ecosystem. We combine small subunit ribosomal RNA gene sequencing approaches with multivariate statistical methods to reveal shifts in operational taxonomic units during successive stages of seasonal stratification and renewal. A meta-analysis is used to identify common and unique patterns of community composition between Saanich Inlet and the anoxic/sulfidic Cariaco Basin (Venezuela) and Framvaren Fjord (Norway) to show shared and unique responses of microbial eukaryotes to oxygen and sulfide in these three environments. Our analyses also reveal temporal fluctuations in rare populations of microbial eukaryotes, particularly anaerobic ciliates, that may be of significant importance to the biogeochemical cycling of methane in OMZs. Eukaryotic 18S rRNA gene sequences recovered from the Saanich Inlet water column on were deposited in Genbank under accession numbers HQ864863–HQ871151.

Metagenomic insights into important microbes from the Dead Zone

NASA Astrophysics Data System (ADS)

Thrash, C.; Baker, B.; Seitz, K.; Temperton, B.; Gillies, L.; Rabalais, N. N.; Mason, O. U.

2015-12-01

Coastal regions of eutrophication-driven oxygen depletion are widespread and increasing in number. Also known as dead zones, these regions take their name from the deleterious effects of hypoxia (dissolved oxygen less than 2 mg/L) on shrimp, demersal fish, and other animal life. Dead zones result from nutrient enrichment of primary production, concomitant consumption by chemoorganotrophic aerobic microorganisms, and strong stratification that prevents ventilation of bottom water. One of the largest dead zones in the world occurs seasonally in the northern Gulf of Mexico (nGOM), where hypoxia can reach up to 22,000 square kilometers. While this dead zone shares many features with more well-known marine oxygen minimum zones, it is nevertheless understudied with regards to the microbial assemblages involved in biogeochemical cycling. We performed metagenomic and metatranscriptomic sequencing on six samples from the 2013 nGOM dead zone from both hypoxic and oxic bottom waters. Assembly and binning led to the recovery of over fifty partial to nearly complete metagenomes from key microbial taxa previously determined to be numerically abundant from 16S rRNA data, such as Thaumarcheaota, Marine Group II Euryarchaeota, SAR406, SAR324, Synechococcus spp., and Planctomycetes. These results provide information about the roles of these taxa in the nGOM dead zone, and opportunities for comparing this region of low oxygen to others around the globe.

Proteomic Characterization of Central Pacific Oxygen Minimum Zone Microbial Communities

NASA Astrophysics Data System (ADS)

Saunders, J. K.; McIlvin, M. M.; Moran, D.; Held, N.; Futrelle, J.; Webb, E.; Santoro, A.; Dupont, C.; Saito, M.

2018-05-01

Microbial proteomic profiles are excellent for surveying vast expanses of pelagic ecosystems for links between microbial communities and the biogeochemical cycles they mediate. Data from the ProteOMZ expedition supports the utility of this method.

Dissimilatory nitrate reduction by Aspergillus terreus isolated from the seasonal oxygen minimum zone in the Arabian Sea

PubMed Central

2014-01-01

Background A wealth of microbial eukaryotes is adapted to life in oxygen-deficient marine environments. Evidence is accumulating that some of these eukaryotes survive anoxia by employing dissimilatory nitrate reduction, a strategy that otherwise is widespread in prokaryotes. Here, we report on the anaerobic nitrate metabolism of the fungus Aspergillus terreus (isolate An-4) that was obtained from sediment in the seasonal oxygen minimum zone in the Arabian Sea, a globally important site of oceanic nitrogen loss and nitrous oxide emission. Results Axenic incubations of An-4 in the presence and absence of oxygen and nitrate revealed that this fungal isolate is capable of dissimilatory nitrate reduction to ammonium under anoxic conditions. A 15N-labeling experiment proved that An-4 produced and excreted ammonium through nitrate reduction at a rate of up to 175 nmol 15NH4+ g-1 protein h-1. The products of dissimilatory nitrate reduction were ammonium (83%), nitrous oxide (15.5%), and nitrite (1.5%), while dinitrogen production was not observed. The process led to substantial cellular ATP production and biomass growth and also occurred when ammonium was added to suppress nitrate assimilation, stressing the dissimilatory nature of nitrate reduction. Interestingly, An-4 used intracellular nitrate stores (up to 6–8 μmol NO3- g-1 protein) for dissimilatory nitrate reduction. Conclusions Our findings expand the short list of microbial eukaryotes that store nitrate intracellularly and carry out dissimilatory nitrate reduction when oxygen is absent. In the currently spreading oxygen-deficient zones in the ocean, an as yet unexplored diversity of fungi may recycle nitrate to ammonium and nitrite, the substrates of the major nitrogen loss process anaerobic ammonium oxidation, and the potent greenhouse gas nitrous oxide. PMID:24517718

Dissimilatory nitrate reduction by Aspergillus terreus isolated from the seasonal oxygen minimum zone in the Arabian Sea.

PubMed

Stief, Peter; Fuchs-Ocklenburg, Silvia; Kamp, Anja; Manohar, Cathrine-Sumathi; Houbraken, Jos; Boekhout, Teun; de Beer, Dirk; Stoeck, Thorsten

2014-02-11

A wealth of microbial eukaryotes is adapted to life in oxygen-deficient marine environments. Evidence is accumulating that some of these eukaryotes survive anoxia by employing dissimilatory nitrate reduction, a strategy that otherwise is widespread in prokaryotes. Here, we report on the anaerobic nitrate metabolism of the fungus Aspergillus terreus (isolate An-4) that was obtained from sediment in the seasonal oxygen minimum zone in the Arabian Sea, a globally important site of oceanic nitrogen loss and nitrous oxide emission. Axenic incubations of An-4 in the presence and absence of oxygen and nitrate revealed that this fungal isolate is capable of dissimilatory nitrate reduction to ammonium under anoxic conditions. A ¹⁵N-labeling experiment proved that An-4 produced and excreted ammonium through nitrate reduction at a rate of up to 175 nmol ¹⁵NH₄⁺ g⁻¹ protein h⁻¹. The products of dissimilatory nitrate reduction were ammonium (83%), nitrous oxide (15.5%), and nitrite (1.5%), while dinitrogen production was not observed. The process led to substantial cellular ATP production and biomass growth and also occurred when ammonium was added to suppress nitrate assimilation, stressing the dissimilatory nature of nitrate reduction. Interestingly, An-4 used intracellular nitrate stores (up to 6-8 μmol NO₃⁻ g⁻¹ protein) for dissimilatory nitrate reduction. Our findings expand the short list of microbial eukaryotes that store nitrate intracellularly and carry out dissimilatory nitrate reduction when oxygen is absent. In the currently spreading oxygen-deficient zones in the ocean, an as yet unexplored diversity of fungi may recycle nitrate to ammonium and nitrite, the substrates of the major nitrogen loss process anaerobic ammonium oxidation, and the potent greenhouse gas nitrous oxide.

On the existence of free and metal complexed sulfide in the Arabian Sea and its oxygen minimum zone

NASA Astrophysics Data System (ADS)

Theberge, Stephen M.; Luther, George W.; Farrenkopf, Anna M.

Free hydrogen sulfide was not detected in the oxygen minimum zone (OMZ) of the Arabian Sea during legs D1 (September 1992) and D3 (October-November 1992) of the Netherlands Indian Ocean Programme (NIOP). However, sulfide complexed to metals was detected by cathodic stripping square wave voltammetry at 2 nM or less throughout the water column. A slight increase in sulfide was measured in the OMZ relative to the surface waters and may be related to sulfur release from organic matter during decomposition. Sulfide complexes are of two general types at low concentrations of metal and sulfide. First, metals such as Mn, Fe, Co and Ni form complexes with bisulfide ion (HS -) that are kinetically labile to dissociation and are reactive. Second, metals such as Cu and Zn form multinuclear complexes with sulfide (S 2-) that are kinetically inert to dissociation; thus, they are less reactive than free (bi)sulfide and the labile metal bisulfide complexes. Zinc and copper sulfide complexes are important in allowing hydrogen sulfide to persist in seawater which contains measurable oxygen.

Seasonal and interannual variability of dissolved oxygen around the Balearic Islands from hydrographic data

NASA Astrophysics Data System (ADS)

Balbín, R.; López-Jurado, J. L.; Aparicio-González, A.; Serra, M.

2014-10-01

Oceanographic data obtained between 2001 and 2011 by the Spanish Institute of Oceanography (IEO, Spain) have been used to characterise the spatial distribution and the temporal variability of the dissolved oxygen around the Balearic Islands (Mediterranean Sea). The study area includes most of the Western Mediterranean Sea, from the Alboran Sea to Cape Creus, at the border between France and Spain. Dissolved oxygen (DO) at the water surface is found to be in a state of equilibrium exchange with the atmosphere. In the spring and summer a subsurface oxygen supersaturation is observed due to the biological activity, above the subsurface fluorescence maximum. Minimum observed values of dissolved oxygen are related to the Levantine Intermediate Waters (LIW). An unusual minimum of dissolved oxygen concentrations was also recorded in the Alboran Sea Oxygen Minimum Zone. The Western Mediterranean Deep Waters (WMDW) and the Western Intermediate Waters (WIW) show higher values of dissolved oxygen than the Levantine Intermediate Waters due to their more recent formation. Using these dissolved oxygen concentrations it is possible to show that the Western Intermediate Waters move southwards across the Ibiza Channel and the deep water circulates around the Balearic Islands. It has also been possible to characterise the seasonal evolution of the different water masses and their dissolved oxygen content in a station in the Algerian sub-basin.

Megafaunal responses to strong oxygen gradients on the Pakistan margin of the Arabian Sea

NASA Astrophysics Data System (ADS)

Murty, Sarah J.; Bett, Brian J.; Gooday, Andrew J.

2009-03-01

The Arabian Sea oxygen minimum zone (OMZ), which intersects the continental margin between approximately 100 and 1200 m, is one of the world's largest deep-water oxygen-deficient water masses. We analysed megafaunal organisms seen in images obtained using a wide-angle survey photographic (WASP) system at nine sites (140-1850 m water depth) across the OMZ on the Pakistan Margin during the late-monsoon period (August-September 2003). The visible megafauna comprised: (1) the megabenthos sensu strictu ( s.s.), (2) large polychaetes and (3) the benthopelagic megafauna (fish, natant decapods and octopods). Large protozoans, mainly the foraminiferan Pelosina sp., were counted but not included in the megafauna. The megabenthos s.s. were rare at the seasonally hypoxic 140-m site (O 2=0.11 ml l -1), entirely absent in the OMZ core and most of the lower transition zone (300-900 m; O 2=0.12-0.15 ml l -1), but peaked in abundance (27.94 indiv. m -2) at 1000 m (O 2=0.16 ml l -1). Densities were much lower at 1100 and 1200 m (0.52-0.69 indiv. m -2; O 2=0.25-0.38 ml l -1), and declined to minimal values (0.01 indiv. m -2) at 1850 m (O 2=1.68 ml l -1). There was no correlation with depth, dissolved-oxygen concentration or sediment organic chemistry variables (%C org, %Total N, C:N, δ13C, δ15N). Pelosina sp. was the only strictly benthic organism visible at 400 and 700 m. Fish and natant decapods were fairly common at 300 m, and fish were the only metazoans seen in photographs from 700 m. Large polychaetes, almost certainly Linopherus sp., were very abundant in photographs from 900 m, where megabenthos s.s. were absent, and somewhat less abundant at 1000 m. Suspension-feeding cnidarians and tunicates were abundant at 1100 and 1200 m, respectively. The number of megabenthos s.s. species visible at each site ranged from six (1000 and 1850 m) to 11 (1100 and 1200 m). Diversity ( H'(log e)) was the lowest at 1000 and 1850 m and the highest at 1100 m, with intermediate values at 140 and 1200 m. Dominance was the highest (>99%) at 1000 m, high (87%) at 1200 m and lower (32-50%) at 140, 1100 and 1850 m. Benthopelagic megafauna appeared more tolerant of dysoxia than the megabenthos s.s., although densities peaked at 1100 m, slightly deeper than for the megabenthos s.s.. The presence of uneaten carrion (dead fish and natant decapods) between 300 and 900 m suggests that scavengers were either not active or not present within the OMZ. The megabenthos s.s. appeared to respond to oxygen concentrations above a threshold value (˜0.15-0.16 ml l -1). The ophiuroid-dominated abundance peak at 1000 m, and the abrupt changes in megabenthic assemblage composition between 1000 and 1200 m, were probably expressions of an 'edge effect', known from other OMZs and believed to reflect a threshold release from physiological oxygen limitation accompanied by an abundant food supply.

A coordinated increase in export production and denitrification on the Costa Rica margin during the early Pleistocene

NASA Astrophysics Data System (ADS)

Yuan, V.; Bascom, C., Jr.; Robinson, R. S.

2013-12-01

The oceanic carbon, nitrogen, and oxygen cycles are linked through export production, oxygen consumption, and denitrification. Denitrification, the bacterial reduction of nitrate, is an anoxic process that serves as the primary sink for fixed nitrogen in the ocean. The Eastern Tropical Pacific (ETP) houses an oxygen minimum zone (OMZ) where pelagic denitrification proceeds as a result of both large scale circulation and regionally high export of organic matter that fuels oxygen consumption in the subsurface. Here we present a 2.4 million year long record of denitrification and productivity in the ETP using ODP Site 1242. Site 1242 is located ~70 km off the west coast of Costa Rica, beneath the OMZ. Downcore records of bulk sedimentary nitrogen isotope values (δ15N) and opal and organic matter accumulation rates show near synchronous increases in δ15N values and biogenic sediment accumulation at approximately 1.6 My. The concurrent increase in the denitrification and productivity proxies suggests that regional oxygen demand could be driving the increase in denitrification observed at Site 1242. This is in contrast to what is observed elsewhere, where export productivity and denitrification changes do not appear to be coupled locally. Moreover, the timing of this increase is distinct from a previously observed increase in δ15N at California Margin Site 1012 which occurred at ~2.1 Ma (Liu et al., G-cubed, 2008) and is also attributed to enhanced denitrification in the OMZ. These differences suggest that the Site 1242 record reflects a purely local or regional process. Interestingly, the later increase in denitrification at 1.6 Ma observed at Site 1242 does not appear to be restricted to the ETP, but rather shows similar timing to a δ15N shift in a site from the Arabian Sea OMZ (Muzuka et al., Proceedings of the ODP, 1991). The new data presented here will help in the development of a mechanistic understanding of relative roles of local and regional processes over global controls on intermediate water OMZ intensity.

Isopycnal diffusivity in the tropical North Atlantic oxygen minimum zone

NASA Astrophysics Data System (ADS)

Köllner, Manuela; Visbeck, Martin; Tanhua, Toste; Fischer, Tim

2017-04-01

Isopycnal diffusivity plays an important role in the ventilation of the Eastern Tropical North Atlantic (ETNA) Oxygen Minimum Zone (OMZ). Lateral tracer transport is described by isopycnal diffusivity and mean advection of the tracer (e.g. oxygen), together they account for up to 70% of the oxygen supply for the OMZ. One of the big challenges is to separate diffusivity from advection. Isopycnal diffusivity was estimated to be Ky=(500 ± 200) m2 s-1 and Kx=(1200 ± 600) m2 s-1 by Banyte et. al (2013) from a Tracer Release Experiment (TRE). Hahn et al. (2014) estimated a meridional eddy diffusivity of 1350 m2 s-1 at 100 m depth decaying to less than 300 m2 s-1 below 800 m depth from repeated ship sections of CTD and ADCP data in addition with hydrographic mooring data. Uncertainties of the estimated diffusivities were still large, thus the Oxygen Supply Tracer Release Experiment (OSTRE) was set up to estimate isopycnal diffusivity in the OMZ using a newly developed sampling strategy of a control volume. The tracer was released in 2012 in the core of the OMZ at approximately 410 m depth and mapped after 6, 15 and 29 months in a regular grid. In addition to the calculation of tracer column integrals from vertical tracer profiles a new sampling method was invented and tested during two of the mapping cruises. The mean eddy diffusivity during OSTRE was found to be about (300 ± 130) m2 s-1. Additionally, the tracer has been advected further to the east and west by zonal jets. We compare different analysis methods to estimate isopycnal diffusivity from tracer spreading and show the advantage of the control volume surveys and control box approach. From the control box approach we are estimating the strength of the zonal jets within the OMZ core integrated over the TRE time period. References: Banyte, D., Visbeck, M., Tanhua, T., Fischer, T., Krahmann, G.,Karstensen, J., 2013. Lateral Diffusivity from Tracer Release Experiments in the Tropical North Atlantic Thermocline. Journal of Geophysical Research 118. Hahn, J., Brandt, P., Greatbatch, R., Krahmann, G., Körtzinger, A., 2014. Oxygen variance and meridional oxygen supply in the Tropical North East Atlantic oxygen minimum zone. Climate Dynamics 43, 2999-3024.

Uptake of phytodetritus by benthic foraminifera under oxygen depletion at the Indian margin (Arabian Sea)

NASA Astrophysics Data System (ADS)

Enge, A. J.; Witte, U.; Kucera, M.; Heinz, P.

2014-04-01

Benthic foraminifera in sediments on the Indian margin of the Arabian Sea, where the oxygen minimum zone (OMZ) impinges on the continental slope, are exposed to particularly severe levels of oxygen depletion. Food supply for the benthic community is high but delivered in distinct pulses during upwelling and water mixing events associated with summer and winter monsoon periods. In order to investigate the response by benthic foraminifera to such pulsed food delivery under oxygen concentrations of less than 0.1 mL L-1 (4.5 μmol L-1), an in situ isotope labeling experiment (13C, 15N) was performed on the western continental slope of India at 540 m water depth (OMZ core region). The assemblage of living foraminifera (>125 μm) in the uppermost centimeter at this depth is characterized by an unexpectedly high population density of 3982 individuals 10 cm-2 and a strong dominance by few calcareous species. For the experiment, we concentrated on the nine most abundant taxa, which constitute 93% of the entire foraminiferal population at 0-1 cm sediment depth. Increased concentrations of 13C and 15N in the cytoplasm indicate that all investigated taxa took up labeled phytodetritus during the 4 day experimental phase. In total, these nine species had assimilated 113.8 mg C m-2 (17.5% of the total added carbon). Uptake of nitrogen by the three most abundant taxa (Bolivina aff. B. dilatata, Cassidulina sp., Bulimina gibba) was 2.7 mg N m-2 (2% of the total added nitrogen). The response to the offered phytodetritus varied largely among foraminiferal species with Uvigerina schwageri being by far the most important species in short-term processing, whereas the most abundant taxa Bolivina aff. B. dilatata and Cassidulina sp. showed comparably low uptake of the offered food. We suggest the observed species-specific differences are related to species biomass and specific feeding preferences. In summary, the experiment in the OMZ core region shows rapid processing of fresh phytodetritus by foraminifera under almost anoxic conditions. The uptake of large amounts of organic matter by few species within four days suggests that foraminifera may play an important role in short-term carbon cycling in the OMZ core region on the Indian margin.

Examining the diversity and distribution of microbial communities from newly discovered methane seeps along the Cascadia Margin

NASA Astrophysics Data System (ADS)

Seabrook, S.; Thurber, A. R.; Embley, R. W.; Raineault, N.; Baumberger, T.; Merle, S. G.

2016-12-01

Methane seeps provide biogeochemical and microbial heterogeneity in deep-sea habitats. In June of 2016 the E/V Nautilus, exploring for methane seeps along the Cascadia continental margin, discovered over 450 bubble streams, indicative of active seepage, and collected biological samples at 6 of the resulting newly discovered seeps. These seeps covered a range of depths, latitudes, habitat types and biogeochemical environments and included: Juan de Fuca (150m), Astoria canyon (800m and 500m), Nehalem Bank (185m), Heceta SW (1200m), SW Coquille Bank (600m), and Klamath Knoll seep (700m). Geologic environment types included continental shelf, canyons and slopes, and these sites spanned the zone of hydrate stability and the Oxygen Minimum Zone. A range of seep-specific habitat were found and sampled including: reduced sediments, microbial mats, methane hydrates, clam beds (Calyptogena spp.), Siboglinidae tubeworm assemblages and sparse assemblages of stalked barnacles. Here, we present an initial characterization of the microbial communities collected via push cores by a remotely operated vehicle (ROV) at the six aforementioned sites. With high throughput amplicon sequencing of the V4-V5 region of the 16S rRNA gene, we characterize the diversity and microbial composition of the seep sites sampled. This characterization is furthered with digital drop PCR of the pmoA gene (involved with aerobic methanotrophy) to allow for a comparison of the community composition with functional gene abundance of critical microbial processes. These data will be placed in the greater biogeochemical context of the region, including direct comparison with paired gas-tight sampling at key locations. The results of these analyses will provide the first microbial description of this broad range of seep ecosystems along the Cascadia Margin adding to our overall understanding of microbial diversity, the dominant physiological processes at seep ecosystems, and the connection between community structure, function and biogeochemistry in habitats which we are just starting to appreciate for their ubiquity in marine environments.

Biogeochemical and Microbial Survey of Gravity Cores from the Guaymas Basin and Sonora Margin

NASA Astrophysics Data System (ADS)

Buckley, A.; Mckay, L. J.; Chanton, J.; Hensen, C.; Turner, T.; Aiello, I. W.; Ravelo, A. C.; Mortera, C.; Teske, A.

2015-12-01

During the cruise "Guaymas14" with RV El Puma (Oct. 14-25, 2014), 15 sediment cores were obtained from the Guaymas Basin Ridge flanks and the Sonora Margin, to contrast the shallow subsurface sediments of the seafloor set at this spreading center and its adjacent continental margin. Here we present biogeochemical profiles of porewater dissolved gases and stable ions, along with high-throughout 16S rRNA gene sequencing of selected samples. Cores from the NW and SE ends of the Guaymas Basin ridge flanks were not sulfidic, and showed neither sulfate depletion nor methane accumulation. In contrast, samples of compression-impacted Sonora Margin on the NE edge of Guaymas Basin and from the upper Sonora Margin beneath the oxygen minimum zone showed an abundance of sulfide, DIC with sulfate depletion, and accumulation of biogenic methane (δ13C-CH4 ca. -85 to -88 ‰) at supersaturated concentrations below sulfate-replete sediment. Samples from an attenuated off-axis seep site on the NW flank of Guaymas Basin differed from both Sonora Margin and Guaymas Basin. The off-axis seep sediments contained 1 to 1.5 mM methane, with distinct δ13C -isotopic content (δ13C-CH4 near -60 ‰); intermediate to the biogenic methane of the Sonora Margin and the hydrothermally produced methane at Guaymas Basin. Unaltered sulfate and low sulfide concentrations indicate insufficiently reduced conditions, suggesting the methane was not produced in situ. Porewater DIC concentrations in the old seep site and the control site were similar to each other (3-5 mM), and lower than in the Sonora Margin sites (ca. 20-40 mM), indicating low bioremineralization in the old seep site and control sediments. Diverse seafloor habitats are expected to result in distinct microbiota that range from strictly anaerobic seep specialists and methane-cycling archaea in the Sonora Margin to diversified heterotrophic communities in the off-axis ridge flank sediments of Guaymas Basin; high-throughput sequencing should also address potential hydrothermal microbial signature in the attenuated off-axis seep site.

Oxygen in the deep-sea: The challenge of maintaining uptake rates in a changing ocean

NASA Astrophysics Data System (ADS)

Hofmann, A. F.; Peltzer, E. T.; Brewer, P. G.

2011-12-01

Although focused on recently, ocean acidification is not the only effect of anthropogenic CO2 emissions on the ocean. Ocean warming will reduce dissolved oxygen concentrations and at the hypoxic limit for a given species this can pose challenges to marine life. The limit is traditionally reported simply as the static mass concentration property [O2]; here we treat it as a dynamic gas exchange problem for the animal analogous to gas exchange at the sea surface. The diffusive limit and its relationship to water velocity is critical for the earliest stages of marine life (eggs, embryos), but the effect is present for all animals at all stages of life. We calculate the external limiting O2 conditions for several representative metabolic rates and their relationship to flow of the bulk fluid under different environmental conditions. Ocean O2 concentrations decline by ≈ 14 μmol kg-1 for a 2 °C rise in temperature. At standard 1000 m depth conditions in the Pacific, flow over the surface would have to increase by ≈ 60% from 2.0 to 3.2 cm s-1 to compensate for this change. The functions derived allow new calculations of depth profiles of limiting O2 concentrations, as well as maximal diffusively sustainable metabolic oxygen consumption rates at various places around the world. Our treatment shows that there is a large variability in the global ocean in terms of facilitating aerobic life. This variability is greater than the variability of the oxygen concentration alone. It becomes clear that temperature and pressure dependencies of diffusion and partial pressure create a region typically around 1000 m depth where a maximal [O2] is needed to sustain a given metabolic rate. This zone of greatest physical constriction on the diffusive transport in the boundary layer is broadly consistent with the oxygen minimum zone, i.e., the zone of least oxygen concentration supply, resulting in a pronounced minimum of maximal diffusively sustainable metabolic oxygen consumption rates. This least-favorable zone for aerobic respiration is bound to expand with further ocean warming.

Water masses in the Humboldt Current System: Properties, distribution, and the nitrate deficit as a chemical water mass tracer for Equatorial Subsurface Water off Chile

NASA Astrophysics Data System (ADS)

Silva, Nelson; Rojas, Nora; Fedele, Aldo

2009-07-01

Three sections are used to analyze the physical and chemical characteristics of the water masses in the eastern South Pacific and their distributions. Oceanographic data were taken from the SCORPIO (May-June 1967), PIQUERO (May-June 1969), and KRILL (June 1974) cruises. Vertical sections of temperature, salinity, σ θ, dissolved oxygen, nitrate, nitrite, phosphate, and silicate were used to analyze the water column structure. Five water masses were identified in the zone through T- S diagrams: Subantarctic Water, Subtropical Water, Equatorial Subsurface Water, Antarctic Intermediate Water, and Pacific Deep Water. Their proportions in the sea water mixture are calculated using the mixing triangle method. Vertical sections were used to describe the geographical distributions of the water mass cores in the upper 1500 m. Several characteristic oceanographic features in the study area were analyzed: the shallow salinity minimum displacement towards the equator, the equatorial subsurface salinity maximum associated with a dissolved oxygen minimum zone and a high nutrient content displacement towards the south, and the equatorward intermediate Antarctic salinity minimum associated with a dissolved oxygen maximum. The nitrate deficit generated in the denitrification area off Peru and northern Chile is proposed as a conservative chemical tracer for the Equatorial Subsurface Waters off the coast of Chile, south of 25°S.

Paralarvae of the complex Sthenoteuthis oualaniensis-Dosidicus gigas (Cephalopoda: Ommastrephidae) in the northern limit of the shallow oxygen minimum zone of the Eastern Tropical Pacific Ocean (April 2012)

NASA Astrophysics Data System (ADS)

Sánchez-Velasco, Laura; Ruvalcaba-Aroche, Erick D.; Beier, Emilio; Godínez, Victor M.; Barton, Eric D.; Díaz-Viloria, Noe; Pacheco, María. R.

2016-03-01

The three-dimensional distribution of the paralarvae of the complex Sthenoteuthis oualaniensis-Dosidicus gigas (Cephalopoda: Ommastrephidae) was analyzed at the northern limit of the shallow oxygen minimum zone in the Eastern Tropical Pacific in April 2012. The upper limit of the oxygen minimum water (˜44 µmol/kg or 1 mL/L) rises from ˜100 m depth in the entrance of the Gulf of California to ˜20 m depth off Cabo Corrientes. Most of the paralarvae of this complex, dominated by D. gigas, were concentrated in the Gulf entrance, between the thermocline (˜20 to ˜50 m depth) and the sea surface, in the warmest (>19°C) oxygenated (>176 µmol/kg) layer. The highest abundance of paralarvae was detected in an anticyclonic eddy (˜120 km diameter and >500 m deep), which contained lower-salinity water (<35 g/kg), consistent with formation in the California Current. Lower paralarvae abundance was recorded further south off Cabo Corrientes, where hypoxic layers were elevated as water shoaled nearshore. Almost no paralarvae were found in the north of the study area beyond the strong salinity front (˜34.8-35.4 g/kg) that bounded the anticyclone. These results showed an affinity of the paralarvae for lower-salinity, oxygenated water, illustrated by the influence of the mesoscale anticyclonic eddy and the salinity front in their distribution. Based on this study, it can be concluded that the expansion of the depth range of hypoxic water observed in the Eastern Tropical Pacific may be increasing environmental stress on the paralarvae by vertically restricting their habitat, and so affecting their survival.

Environmental Genomic Analysis of Stratified Microbial Communities and Climate Active Gases in the Subarctic Pacific Oxygen Minimum Zone

NASA Astrophysics Data System (ADS)

Wright, J.; Hallam, S.; Merzouk, A.; Tortell, P.

2008-12-01

Oxygen minimum zones (OMZs) are areas of low dissolved oxygen concentrations that play a major role in biogeochemical cycling within the world's oceans. They are major sinks for nitrogen and sources for the greenhouse gases carbon dioxide and nitrous oxide. Therefore, microbial mediated biological activity associated with these systems directly impacts ocean productivity and global climate balance. There is increasing evidence that ocean warming trends will decrease dissolved oxygen concentrations within the coastal and interior regions of the subarctic Pacific, causing an expansion of the hypoxic boundary layer. This expansion will have a direct effect on coastal benthic ecosystems and the productivity of marine fisheries due to habitat loss and changes in nutrient cycling. In order to understand the potential implications of these transitions, we are performing environmental genomic analyses of indigenous microbial communities found in coastal and open ocean OMZs in the subarctic Pacific Ocean in relation to dissolved gas and nutrient concentrations. In addition to identifying and describing the key microbial players and biochemical pathways contributing to carbon, nitrogen and sulfur metabolism within the subarctic Pacific Ocean, this work provides a solid comparative genomic foundation for understanding the biogeochemical processes at work in marine OMZs around the globe.

Size-fractionated diversity of eukaryotic microbial communities in the Eastern Tropical North Pacific oxygen minimum zone.

PubMed

Duret, Manon T; Pachiadaki, Maria G; Stewart, Frank J; Sarode, Neha; Christaki, Urania; Monchy, Sébastien; Srivastava, Ankita; Edgcomb, Virginia P

2015-05-01

Oxygen minimum zones (OMZs) caused by water column stratification appear to expand in parts of the world's ocean, with consequences for marine biogeochemical cycles. OMZ formation is often fueled by high surface primary production, and sinking organic particles can be hotspots of interactions and activity within microbial communities. This study investigated the diversity of OMZ protist communities in two biomass size fractions (>30 and 30-1.6 μm filters) from the world's largest permanent OMZ in the Eastern Tropical North Pacific. Diversity was quantified via Illumina MiSeq sequencing of V4 region of 18S SSU rRNA genes in samples spanning oxygen gradients at two stations. Alveolata and Rhizaria dominated the two size fractions at both sites along the oxygen gradient. Community composition at finer taxonomic levels was partially shaped by oxygen concentration, as communities associated with versus anoxic waters shared only ∼32% of operational taxonomic unit (OTU) (97% sequence identity) composition. Overall, only 9.7% of total OTUs were recovered at both stations and under all oxygen conditions sampled, implying structuring of the eukaryotic community in this area. Size-fractionated communities exhibited different taxonomical features (e.g. Syndiniales Group I in the 1.6-30 μm fraction) that could be explained by the microniches created on the surface-originated sinking particles. © FEMS 2015. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Dynamics and stoichiometry of nutrients and phytoplankton in waters influenced by the oxygen minimum zone in the eastern tropical Pacific

NASA Astrophysics Data System (ADS)

Franz, Jasmin; Krahmann, Gerd; Lavik, Gaute; Grasse, Patricia; Dittmar, Thorsten; Riebesell, Ulf

2012-04-01

The tropical South East Pacific is characterized by strong coastal upwelling on the narrow continental shelf and an intense oxygen minimum zone (OMZ) in the intermediate water layer. These hydrographic properties are responsible for a permanent supply of intermediate water masses to the surface rich in nutrients and with a remarkably low inorganic N:P stoichiometry. To investigate the impact of OMZ-influenced upwelling waters on phytoplankton growth, elemental and taxonomical composition we measured hydrographic and biogeochemical parameters along an east-west transect at 10°S in the tropical South East Pacific, stretching from the upwelling region above the narrow continental shelf to the well-stratified oceanic section of the eastern boundary regime. New production in the area of coastal upwelling was driven by large-sized phytoplankton (e.g. diatoms) with generally low N:P ratios (<16:1). While nitrate and phosphate concentrations were at levels not limiting phytoplankton growth along the entire transect, silicate depletion prohibited diatom growth further off-shore. A deep chlorophyll a maximum consisting of pico-/nano- (Synechococcus, flagellates) and microphytoplankton occurred within a pronounced thermocline in subsurface waters above the shelf break and showed intermediate N:P ratios close to Redfield proportions. High PON:POP (>20:1) ratios were observed in the stratified open ocean section of the transect, coinciding with the abundance of two strains of the pico-cyanobacterium Prochlorococcus; a high-light adapted strain in the surface layer and a low-light adapted strain occurring along the oxic-anoxic transition zone below the thermocline. Excess phosphate present along the entire transect did not appear to stimulate growth of nitrogen-fixing phytoplankton, as pigment fingerprinting did not indicate the presence of diazotrophic cyanobacteria at any of our sampling stations. Instead, a large fraction of the excess phosphate generated within the oxygen minimum zone was consumed by non-Redfield production of large phytoplankton in shelf surface waters.

Effects of Southern Hemispheric Wind Changes on Global Oxygen and the Pacific Oxygen Minimum Zone

NASA Astrophysics Data System (ADS)

Getzlaff, J.; Dietze, H.; Oschlies, A.

2016-02-01

We use a coupled ocean biogeochemistry-circulation model to compare the impact of changes in southern hemispheric winds with that of warming induced buoyancy fluxes on dissolved oxygen. Changes in the southern hemispheric wind fields, which are in line with an observed shift of the southern annual mode, are a combination of a strengthening and poleward shift of the southern westerlies. We differentiate between effects caused by a strengthening of the westerlies and effects of a southward shift of the westerlies that is accompanied by a poleward expansion of the tropical trade winds. Our results confirm that the Southern Ocean plays an important role for the marine oxygen supply: a strengthening of the southern westerlies, that leads to an increase of the water formation rates of the oxygen rich deep and intermediate water masses, can counteract part of the warming-induced decline in marine oxygen levels. The wind driven intensification of the Southern Ocean meridional overturning circulation drives an increase of the global oxygen supply. Furthermore the results show that the shift of the boundary between westerlies and trades results in an increase of subantarctic mode water and an anti-correlated decrease of deep water formation and reduces the oceanic oxygen supply. In addition we find that the increased meridional extension of the southern trade winds, results in a strengthening and southward shift of the subtropical wind stress curl. This alters the subtropical gyre circulation (intensification and southward shift) and with it decreases the water mass transport into the oxygen minimum zone. In a business-as-usual CO2 emission scenario, the poleward shift of the trade-to-westerlies boundary is as important for the future evolution of the suboxic volume as direct warming-induced changes.

Niche segregation of ammonia-oxidizing archaea and anammox bacteria in the Arabian Sea oxygen minimum zone

PubMed Central

Pitcher, Angela; Villanueva, Laura; Hopmans, Ellen C; Schouten, Stefan; Reichart, Gert-Jan; Sinninghe Damsté, Jaap S

2011-01-01

Ammonia-oxidizing archaea (AOA) and anaerobic ammonia-oxidizing (anammox) bacteria have emerged as significant factors in the marine nitrogen cycle and are responsible for the oxidation of ammonium to nitrite and dinitrogen gas, respectively. Potential for an interaction between these groups exists; however, their distributions are rarely determined in tandem. Here we have examined the vertical distribution of AOA and anammox bacteria through the Arabian Sea oxygen minimum zone (OMZ), one of the most intense and vertically exaggerated OMZs in the global ocean, using a unique combination of intact polar lipid (IPL) and gene-based analyses, at both DNA and RNA levels. To screen for AOA-specific IPLs, we developed a high-performance liquid chromatography/mass spectrometry/mass spectrometry method targeting hexose-phosphohexose (HPH) crenarchaeol, a common IPL of cultivated AOA. HPH-crenarchaeol showed highest abundances in the upper OMZ transition zone at oxygen concentrations of ca. 5 μ, coincident with peaks in both thaumarchaeotal 16S rDNA and amoA gene abundances and gene expression. In contrast, concentrations of anammox-specific IPLs peaked within the core of the OMZ at 600 m, where oxygen reached the lowest concentrations, and coincided with peak anammox 16S rDNA and the hydrazine oxidoreductase (hzo) gene abundances and their expression. Taken together, the data reveal a unique depth distribution of abundant AOA and anammox bacteria and the segregation of their respective niches by >400 m, suggesting no direct coupling of their metabolisms at the time and site of sampling in the Arabian Sea OMZ. PMID:21593795

The trophic and metabolic pathways of foraminifera in the Arabian Sea: evidence from cellular stable isotopes

NASA Astrophysics Data System (ADS)

Jeffreys, R. M.; Fisher, E. H.; Gooday, A. J.; Larkin, K. E.; Billett, D. S. M.; Wolff, G. A.

2015-03-01

The Arabian Sea is a region of elevated productivity with the highest globally recorded fluxes of particulate organic matter (POM) to the deep ocean, providing an abundant food source for fauna at the seafloor. However, benthic communities are also strongly influenced by an intense oxygen minimum zone (OMZ), which impinges on the continental slope from 100 to 1000 m water depth. We compared the trophic ecology of foraminifera on the Oman and Pakistan margins of the Arabian Sea (140-3185 m water depth). These two margins are contrasting both in terms of the abundance of sedimentary organic matter and the intensity of the OMZ. Organic carbon concentrations of surficial sediments were higher on the Oman margin (3.32 ± 1.4%) compared to the Pakistan margin (2.45 ± 1.1%) and sedimentary organic matter (SOM) quality estimated from the Hydrogen Index was also higher on the Oman margin (300-400 mg HC mg TOC-1) compared to the Pakistan margin (< 250 mg HC mg TOC-1). The δ13C and δ15N values of sediments were similar on both margins (-20 and 8‰, respectively). Stable isotope analysis (SIA) showed that foraminiferal cells had a wide range of δ13C values (-25.5 to -11.5‰), implying that they utilise multiple food sources; indeed δ13C values varied between depths, foraminiferal types and between the two margins. Foraminifera had broad ranges in δ15N values (-7.8 to 27.3‰). The enriched values suggest that some species may store nitrate to utilise in respiration; this was most notable on the Pakistan margin. Depleted foraminiferal δ15N values, particularly at the Oman margin, may reflect feeding on chemosynthetic bacteria. We suggest that differences in productivity regimes may be responsible for the differences observed in foraminiferal isotopic composition. In addition, at the time of sampling, whole jellyfish carcasses (Crambionella orsini) and a carpet of jelly detritus were observed across the Oman margin transect. Associated chemosynthetic bacteria may have provided an organic-rich food source for foraminifera at these sites. Our data suggest that foraminifera in OMZ settings can utilise a variety of food sources and metabolic pathways to meet their energetic demands.

Carbon, hydrogen, and oxygen isotope studies of the regional metamorphic complex at Naxos, Greece

USGS Publications Warehouse

Rye, R.O.; Schuiling, R.D.; Rye, D.M.; Jansen, J.B.H.

1976-01-01

At Naxos, Greece, a migmatite dome is surrounded by schists and marbles of decreasing metamorphic grade. Sillimanite, kyanite, biotite, chlorite, and glaucophane zones are recognized at successively greater distances from the migmatite dome. Quartz-muscovite and quartz-biotite oxygen isotope and mineralogie temperatures range from 350 to 700??C. The metamorphic complex can be divided into multiple schist-rich (including migmatites) and marblerich zones. The ??18O values of silicate minerals in migmatite and schist units and quartz segregations in the schist-rich zones decrease with increase in metamorphic grades. The calculated ??18OH2O values of the metamorphic fluids in the schist-rich zones decrease from about 15??? in the lower grades to an average of about 8.5??? in the migmatite. The ??D values of OH-minerals (muscovite, biotite, chlorite, and glaucophane) in the schist-rich zones also decrease with increase in grade. The calculated ??DH2O values for the metamorphic fluid decrease from -5??? in the glaucophane zone to an average of about -70??? in the migmatite. The ??D values of water in fluid inclusions in quartz segregations in the higher grade rocks are consistent with this trend. The??18O values of silicate minerals and quartz segregations in marble-rich zones are usually very large and were controlled by exchange with the adjacent marbles. The ??D values of the OH minerals in some marble-rich zones may reflect the value of water contained in the rocks prior to metamorphism. Detailed data on 20 marble units show systematic variations of ??18O values which depend upon metamorphic grade. Below the 540??C isograd very steep ??18O gradients at the margins and large ??18O values in the interior of the marbles indicate that oxygen isotope exchange with the adjacent schist units was usually limited to the margins of the marbles with more exchange occurring in the stratigraphic bottom than in the top margins. Above the 540??C isograd lower ??18O values occur in the interior of the marble units reflecting a greater degree of recrystallization and the occurrence of Ca-Mg-silicates. Almost all the ??13C values of the marbles are in the range of unaltered marine limestones. Nevertheless, the ??13C values of most marble units show a general correlation with ??18O values. The CO2 H2O mole ratio of fluid inclusions in quartz segregations range from 0.01 to 2. The??13C values of the CO2 range from -8.0 to 3.6??? and indicate that at some localities CO2 in the metamorphic fluid was not in carbon isotopic equilibrium with the marbles. ?? 1976.

Evaluation of I/Ca ratios in benthic foraminifera from the Peruvian oxygen minimum zone as proxy for redox conditions in the ambient water masses

NASA Astrophysics Data System (ADS)

Glock, N.; Liebetrau, V.; Eisenhauer, A.

2014-12-01

Tropical oxygen minimum zones (OMZs) are most important areas of oxygen depletion in today´s oceans and nutrient cycling in these regions has a large socio-economic impact because they account for about 17% of the global commercial fish catches(1). Possibly increasing magnitude and area of oxygen depletion in these regions, might endanger rich pelagic fish habitats in the future threatening the global marine food supply. By the use of a quantitative redox proxy in OMZs, reconstruction of the temporal variation in OMZ extension eventually providing information about past and future changes in oxygenation and the anthropogenic role in the recent trend of expanding OMZs(2). Recent work has shown that iodine/calcium (I/Ca) ratios in marine carbonates are a promising proxy for ambient oxygen concentration(3). Our study explores the correlation of I/Ca ratios in four benthic foraminiferal species (three calcitic, one aragonitic) from the Peruvian OMZ to bottom water oxygen concentrations ([O2]BW) and evaluates foraminiferal I/Ca ratios as a possible redox proxy for the ambient water masses. Our results show that all species have a positive trend in the I/Ca ratios as a function of [O2]BW. Only for the aragonitic species Hoeglundina elegans this trend is not significant. The highest significance has been found for Uvigerina striata (I/Ca = 0.032(±0.004).[O2]BW + 0.29(±0.03), R² = 0.61, F = 75, P < 0.0001). Although I/Ca ratios in benthic foraminifera appear to be a robust redox proxy there are some methodical issues which have to be considered. These "pitfalls" include: (i) the volatility of iodine in acidic solutions, (ii) a species dependency of the I/Ca-[O2]BW relationship which is either related to a strong vital effect or toa species dependency on the calcification depth within sediment, and (iii) the inter-test variability of I/Ca between different specimens from the same species and habitat. (1): FAO FishStat: Fisheries and aquaculture software. In: FAO Fisheries and Aquaculture Department[online]. Rome. Updated 28 Nov. 2013. (2): Stramma et al.: Expanding Oxygen-Minimum Zones in the Tropical Oceans, Science, 320, 655-658, 2008. (3): Lu et al.: Iodine to calcium ratios in marine carbonate as a paleo-redox proxy during oceanic anoxic events, Geology, 38, 1107-1110, 2010.

Regional cement stratigraphy and diagenetic history of Waulsortian Limestones, eastern Midlands, Republic of Ireland

DOE Office of Scientific and Technical Information (OSTI.GOV)

King, D.E.; Meyers, W.J.

1985-02-01

The Lower Carboniferous Waulsortian Limestones, eastern Midlands, Republic of Ireland, contain 7 distinct luminescent zones in clear calcite cements that overlie inclusion-rich, marine cements in cavities and also fill fractures and aragonite-skeleton molds. The luminescent sequence, which records precipitation from increasingly reducing pore waters, is regionally and stratigraphically consistent over an interval more than 1200 ft thick. Zone 1 cements are nonluminescent; zone 2 cements are brightly luminescent; and zones 3-7 cements are ferroan with a moderate to dull luminescence. Zone 1 cements (mean -2.6% delta/sup 18/O/ +3.3% delta/sup 13/C PDB) are slightly depleted in oxygen relative to radiaxial-fibrous cementsmore » (mean -1.8% delta/sup 18/O/ +3.5% delta/sup 13/C PDB) which have a composition that reflects Lower Carboniferous seawater. Zone 4 cements (mean -4.1% delta/sup 18/O/ +3.1% delta/sup 13/C PDB) are depleted in oxygen relative to zone 1, whereas zone 5 cements (mean -11.8% delta/sup 18/O/ +1.1 delta/sup 13/C PDB) are extremely depleted in oxygen and somewhat in carbon. Locally intense dolomitization includes 2 regionally extensive generations of ferroan saddle dolomite. Petrographic relationships demonstrate these dolomite generations were replaced by zone 5 cement. Sulfide mineralization, principally pyrite and sphalerite, occurred after the precipitation of zone 5 cement. Much of diagenesis occurred during a brief period in the Lower Carboniferous. Zones 1-6 and saddle dolomites are contained in Chadian (upper Osagean), shallow-marine facies overlying the Waulsortian. Fractures filled by zone 5 cements are truncated at the margins of Waulsortian clasts contained in a conglomerate overlying an early Arundian (early Meramecian) unconformity.« less

Oxygen minimum zone: An important oceanographic habitat for deep-diving northern elephant seals, Mirounga angustirostris.

PubMed

Naito, Yasuhiko; Costa, Daniel P; Adachi, Taiki; Robinson, Patrick W; Peterson, Sarah H; Mitani, Yoko; Takahashi, Akinori

2017-08-01

Little is known about the foraging behavior of top predators in the deep mesopelagic ocean. Elephant seals dive to the deep biota-poor oxygen minimum zone (OMZ) (>800 m depth) despite high diving costs in terms of energy and time, but how they successfully forage in the OMZ remains largely unknown. Assessment of their feeding rate is the key to understanding their foraging behavior, but this has been challenging. Here, we assessed the feeding rate of 14 female northern elephant seals determined by jaw motion events (JME) and dive cycle time to examine how feeding rates varied with dive depth, particularly in the OMZ. We also obtained video footage from seal-mounted videos to understand their feeding in the OMZ. While the diel vertical migration pattern was apparent for most depths of the JME, some very deep dives, beyond the normal diel depth ranges, occurred episodically during daylight hours. The midmesopelagic zone was the main foraging zone for all seals. Larger seals tended to show smaller numbers of JME and lower feeding rates than smaller seals during migration, suggesting that larger seals tended to feed on larger prey to satisfy their metabolic needs. Larger seals also dived frequently to the deep OMZ, possibly because of a greater diving ability than smaller seals, suggesting their dependency on food in the deeper depth zones. Video observations showed that seals encountered the rarely reported ragfish ( Icosteus aenigmaticus ) in the depths of the OMZ, which failed to show an escape response from the seals, suggesting that low oxygen concentrations might reduce prey mobility. Less mobile prey in OMZ would enhance the efficiency of foraging in this zone, especially for large seals that can dive deeper and longer. We suggest that the OMZ plays an important role in structuring the mesopelagic ecosystem and for the survival and evolution of elephant seals.

Water column biogeochemistry of oxygen minimum zones in the eastern tropical North Atlantic and eastern tropical South Pacific Oceans

NASA Astrophysics Data System (ADS)

Löscher, C. R.; Bange, H. W.; Schmitz, R. A.; Callbeck, C. M.; Engel, A.; Hauss, H.; Kanzow, T.; Kiko, R.; Lavik, G.; Loginova, A.; Melzner, F.; Neulinger, S. C.; Pahlow, M.; Riebesell, U.; Schunck, H.; Thomsen, S.; Wagner, H.

2015-03-01

Recent modeling results suggest that oceanic oxygen levels will decrease significantly over the next decades to centuries in response to climate change and altered ocean circulation. Hence the future ocean may experience major shifts in nutrient cycling triggered by the expansion and intensification of tropical oxygen minimum zones (OMZs). There are numerous feedbacks between oxygen concentrations, nutrient cycling and biological productivity; however, existing knowledge is insufficient to understand physical, chemical and biological interactions in order to adequately assess past and potential future changes. We investigated the pelagic biogeochemistry of OMZs in the eastern tropical North Atlantic and eastern tropical South Pacific during a series of cruise expeditions and mesocosm studies. The following summarizes the current state of research on the influence of low environmental oxygen conditions on marine biota, viruses, organic matter formation and remineralization with a particular focus on the nitrogen cycle in OMZ regions. The impact of sulfidic events on water column biogeochemistry, originating from a specific microbial community capable of highly efficient carbon fixation, nitrogen turnover and N2O production is further discussed. Based on our findings, an important role of sinking particulate organic matter in controlling the nutrient stochiometry of the water column is suggested. These particles can enhance degradation processes in OMZ waters by acting as microniches, with sharp gradients enabling different processes to happen in close vicinity, thus altering the interpretation of oxic and anoxic environments.

Centennial changes in North Pacific anoxia linked to tropical trade winds

USGS Publications Warehouse

Deutsch, Curtis; Berelson, William; Thunell, Robert; Weber, Thomas; Tems, Caitlin; McManus, James; Crusius, John; Ito, Taka; Baumgartner, Timothy; Ferreira, Vicente; Mey, Jacob; van Geen, Alexander

2014-01-01

Climate warming is expected to reduce oxygen (O2) supply to the ocean and expand its oxygen minimum zones (OMZs). We reconstructed variations in the extent of North Pacific anoxia since 1850 using a geochemical proxy for denitrification (δ15N) from multiple sediment cores. Increasing δ15N since ~1990 records an expansion of anoxia, consistent with observed O2 trends. However, this was preceded by a longer declining δ15N trend that implies that the anoxic zone was shrinking for most of the 20th century. Both periods can be explained by changes in winds over the tropical Pacific that drive upwelling, biological productivity, and O2 demand within the OMZ. If equatorial Pacific winds resume their predicted weakening trend, the ocean’s largest anoxic zone will contract despite a global O2 decline.

Nitrite oxidation in the Namibian oxygen minimum zone.

PubMed

Füssel, Jessika; Lam, Phyllis; Lavik, Gaute; Jensen, Marlene M; Holtappels, Moritz; Günter, Marcel; Kuypers, Marcel M M

2012-06-01

Nitrite oxidation is the second step of nitrification. It is the primary source of oceanic nitrate, the predominant form of bioavailable nitrogen in the ocean. Despite its obvious importance, nitrite oxidation has rarely been investigated in marine settings. We determined nitrite oxidation rates directly in (15)N-incubation experiments and compared the rates with those of nitrate reduction to nitrite, ammonia oxidation, anammox, denitrification, as well as dissimilatory nitrate/nitrite reduction to ammonium in the Namibian oxygen minimum zone (OMZ). Nitrite oxidation (≤372 nM NO(2)(-) d(-1)) was detected throughout the OMZ even when in situ oxygen concentrations were low to non-detectable. Nitrite oxidation rates often exceeded ammonia oxidation rates, whereas nitrate reduction served as an alternative and significant source of nitrite. Nitrite oxidation and anammox co-occurred in these oxygen-deficient waters, suggesting that nitrite-oxidizing bacteria (NOB) likely compete with anammox bacteria for nitrite when substrate availability became low. Among all of the known NOB genera targeted via catalyzed reporter deposition fluorescence in situ hybridization, only Nitrospina and Nitrococcus were detectable in the Namibian OMZ samples investigated. These NOB were abundant throughout the OMZ and contributed up to ~9% of total microbial community. Our combined results reveal that a considerable fraction of the recently recycled nitrogen or reduced NO(3)(-) was re-oxidized back to NO(3)(-) via nitrite oxidation, instead of being lost from the system through the anammox or denitrification pathways.

Monoclonal Antibody Therapy in Treating Patients With Chronic Lymphocytic Leukemia, Lymphocytic Lymphoma, Acute Lymphoblastic Leukemia, or Acute Myeloid Leukemia

ClinicalTrials.gov

2013-06-03

Extranodal Marginal Zone B-cell Lymphoma of Mucosa-associated Lymphoid Tissue; Nodal Marginal Zone B-cell Lymphoma; Noncontiguous Stage II Marginal Zone Lymphoma; Noncontiguous Stage II Small Lymphocytic Lymphoma; Recurrent Adult Acute Lymphoblastic Leukemia; Recurrent Adult Acute Myeloid Leukemia; Recurrent Marginal Zone Lymphoma; Recurrent Small Lymphocytic Lymphoma; Refractory Chronic Lymphocytic Leukemia; Splenic Marginal Zone Lymphoma; Stage III Marginal Zone Lymphoma; Stage III Small Lymphocytic Lymphoma; Stage IV Marginal Zone Lymphoma; Stage IV Small Lymphocytic Lymphoma

Oxygen Minimum Zones in Miniature: Microbial Community Diversity, Activity, and Assembly Across Oxygen Gradients in Meromictic Marine Lakes, Palau

NASA Astrophysics Data System (ADS)

Beman, J. M.

2016-02-01

Oxygen minimum zones (OMZs) play a central role in biogeochemical cycles and are expanding as a consequence of climate change, yet our understanding of these changes is limited by a lack of systematic analyses of low-oxygen ecosystems. In particular, forecasting biogeochemical feedbacks to deoxygenation requires detailed knowledge of microbial community assembly and activity as oxygen declines. Marine `lakes'—isolated bodies of seawater surrounded by land—are an ideal comparative system, as they provide a pronounced oxygen gradient extending from well-mixed, holomictic lakes to stratified, meromictic lakes that vary in their extent of anoxia. We examined 13 marine lakes using pyrosequencing of 16S rRNA genes, quantitative PCR for nitrogen (N)- and sulfur (S)-cycling functional genes and groups, and N- and carbon (C)-cycling rate measurements. All lakes were inhabited by well-known marine bacteria, demonstrating the broad relevance of this study system. Microbial diversity was typically highest in the anoxic monimolimnion of meromictic lakes, with marine cyanobacteria, SAR11, and other common bacteria replaced by anoxygenic phototrophs, sulfate-reducing bacteria (SRBs), and SAR406 in the monimolimnion. Denitrifier nitrite reductase (nirS) genes were also detected alongside high abundances (>106 ml-1) of dissimilatory sulfite reductase (dsrA) genes from SRBs in the monimolimnion. Sharp changes in community structure were linked to environmental gradients (constrained variation in redundancy analysis=76%) and deterministic processes dominated community assembly at all depths (nearest taxon index values >4). These results indicate that oxygen is a strong, deterministic driver of microbial community assembly. We also observed enhanced N- and C-cycling rates along the transition from hypoxic to anoxic to sulfidic conditions, suggesting that microbial communities form a positive feedback loop that may accelerate deoxygenation and OMZ expansion.

Mimicking the oxygen minimum zones: stimulating interaction of aerobic archaeal and anaerobic bacterial ammonia oxidizers in a laboratory-scale model system

PubMed Central

Yan, Jia; Haaijer, Suzanne C M; Op den Camp, Huub J M; Niftrik, Laura; Stahl, David A; Könneke, Martin; Rush, Darci; Sinninghe Damsté, Jaap S; Hu, Yong Y; Jetten, Mike S M

2012-01-01

In marine oxygen minimum zones (OMZs), ammonia-oxidizing archaea (AOA) rather than marine ammonia-oxidizing bacteria (AOB) may provide nitrite to anaerobic ammonium-oxidizing (anammox) bacteria. Here we demonstrate the cooperation between marine anammox bacteria and nitrifiers in a laboratory-scale model system under oxygen limitation. A bioreactor containing ‘Candidatus Scalindua profunda’ marine anammox bacteria was supplemented with AOA (Nitrosopumilus maritimus strain SCM1) cells and limited amounts of oxygen. In this way a stable mixed culture of AOA, and anammox bacteria was established within 200 days while also a substantial amount of endogenous AOB were enriched. ‘Ca. Scalindua profunda’ and putative AOB and AOA morphologies were visualized by transmission electron microscopy and a C18 anammox [3]-ladderane fatty acid was highly abundant in the oxygen-limited culture. The rapid oxygen consumption by AOA and AOB ensured that anammox activity was not affected. High expression of AOA, AOB and anammox genes encoding for ammonium transport proteins was observed, likely caused by the increased competition for ammonium. The competition between AOA and AOB was found to be strongly related to the residual ammonium concentration based on amoA gene copy numbers. The abundance of archaeal amoA copy numbers increased markedly when the ammonium concentration was below 30 μM finally resulting in almost equal abundance of AOA and AOB amoA copy numbers. Massive parallel sequencing of mRNA and activity analyses further corroborated equal abundance of AOA and AOB. PTIO addition, inhibiting AOA activity, was employed to determine the relative contribution of AOB versus AOA to ammonium oxidation. The present study provides the first direct evidence for cooperation of archaeal ammonia oxidation with anammox bacteria by provision of nitrite and consumption of oxygen. PMID:23057688

The formation of a subsurface anticyclonic eddy in the Peru-Chile Undercurrent and its impact on the near-coastal salinity, oxygen, and nutrient distributions

NASA Astrophysics Data System (ADS)

Thomsen, Soeren; Kanzow, Torsten; Krahmann, Gerd; Greatbatch, Richard J.; Dengler, Marcus; Lavik, Gaute

2016-01-01

The formation of a subsurface anticyclonic eddy in the Peru-Chile Undercurrent (PCUC) in January and February 2013 is investigated using a multiplatform four-dimensional observational approach. Research vessel, multiple glider, and mooring-based measurements were conducted in the Peruvian upwelling regime near 12°30'S. The data set consists of >10,000 glider profiles and repeated vessel-based hydrography and velocity transects. It allows a detailed description of the eddy formation and its impact on the near-coastal salinity, oxygen, and nutrient distributions. In early January, a strong PCUC with maximum poleward velocities of ˜0.25 m/s at 100-200 m depth was observed. Starting on 20 January, a subsurface anticyclonic eddy developed in the PCUC downstream of a topographic bend, suggesting flow separation as the eddy formation mechanism. The eddy core waters exhibited oxygen concentration of <1 μmol/kg, an elevated nitrogen deficit of ˜17 μmol/L, and potential vorticity close to zero, which seemed to originate from the bottom boundary layer of the continental slope. The eddy-induced across-shelf velocities resulted in an elevated exchange of water masses between the upper continental slope and the open ocean. Small-scale salinity and oxygen structures were formed by along-isopycnal stirring, and indications of eddy-driven oxygen ventilation of the upper oxygen minimum zone were observed. It is concluded that mesoscale stirring of solutes and the offshore transport of eddy core properties could provide an important coastal open ocean exchange mechanism with potentially large implications for nutrient budgets and biogeochemical cycling in the oxygen minimum zone off Peru.

Rituximab and Dexamethasone in Treating Patients With Low-Grade Non-Hodgkin Lymphoma

ClinicalTrials.gov

2017-04-14

Contiguous Stage II Grade 1 Follicular Lymphoma; Contiguous Stage II Grade 2 Follicular Lymphoma; Contiguous Stage II Marginal Zone Lymphoma; Cutaneous B-cell Non-Hodgkin Lymphoma; Extranodal Marginal Zone B-cell Lymphoma of Mucosa-associated Lymphoid Tissue; Nodal Marginal Zone B-cell Lymphoma; Noncontiguous Stage II Grade 1 Follicular Lymphoma; Noncontiguous Stage II Grade 2 Follicular Lymphoma; Noncontiguous Stage II Marginal Zone Lymphoma; Recurrent Grade 1 Follicular Lymphoma; Recurrent Grade 2 Follicular Lymphoma; Recurrent Marginal Zone Lymphoma; Splenic Marginal Zone Lymphoma; Stage I Grade 1 Follicular Lymphoma; Stage I Grade 2 Follicular Lymphoma; Stage I Marginal Zone Lymphoma; Stage III Grade 1 Follicular Lymphoma; Stage III Grade 2 Follicular Lymphoma; Stage III Marginal Zone Lymphoma; Stage IV Grade 1 Follicular Lymphoma; Stage IV Grade 2 Follicular Lymphoma; Stage IV Marginal Zone Lymphoma; Waldenstrom Macroglobulinemia

Marginal Ice Zone: Biogeochemical Sampling with Gliders

DTIC Science & Technology

2015-09-30

chlorophyll primary productivity model to estimate and compare phytoplankton productivity under full ice cover, in the MIZ, and in open ice-free water...observing array (Fig. 1). The glider sensor suite included temperature, temperature microstructure, salinity, oxygen, chlorophyll fluorescence, optical...operating in continental shelf waters off Alaska’s north slope allowed us to construct proxy libraries for converting chlorophyll fluorescence to

Metaproteomics reveals differential modes of metabolic coupling among ubiquitous oxygen minimum zone microbes

PubMed Central

Hawley, Alyse K.; Brewer, Heather M.; Norbeck, Angela D.; Paša-Tolić, Ljiljana; Hallam, Steven J.

2014-01-01

Marine oxygen minimum zones (OMZs) are intrinsic water column features arising from respiratory oxygen demand during organic matter degradation in stratified waters. Currently OMZs are expanding due to global climate change with resulting feedback on marine ecosystem function. Here we use metaproteomics to chart spatial and temporal patterns of gene expression along defined redox gradients in a seasonally stratified fjord to better understand microbial community responses to OMZ expansion. The expression of metabolic pathway components for nitrification, anaerobic ammonium oxidation (anammox), denitrification, and inorganic carbon fixation were differentially expressed across the redoxcline and covaried with distribution patterns of ubiquitous OMZ microbes including Thaumarchaeota, Nitrospina, Nitrospira, Planctomycetes, and SUP05/ARCTIC96BD-19 Gammaproteobacteria. Nitrification and inorganic carbon fixation pathways affiliated with Thaumarchaeota dominated dysoxic waters, and denitrification, sulfur oxidation, and inorganic carbon fixation pathways affiliated with the SUP05 group of nitrate-reducing sulfur oxidizers dominated suboxic and anoxic waters. Nitrifier nitrite oxidation and anammox pathways affiliated with Nirospina, Nitrospira, and Planctomycetes, respectively, also exhibited redox partitioning between dysoxic and suboxic waters. The numerical abundance of SUP05 proteins mediating inorganic carbon fixation under anoxic conditions suggests that SUP05 will become increasingly important in global ocean carbon and nutrient cycling as OMZs expand. PMID:25053816

Diazotroph community structure in the deep oxygen minimum zone of the Costa Rica Dome.

PubMed

Cheung, Shunyan; Xia, Xiaomin; Guo, Cui; Liu, Hongbin

2016-03-01

Oxygen minimum zones (OMZs), characterized by depleted dissolved oxygen concentration in the intermediate depth of the water column, are predicted to expand under the influence of global warming. Recent studies in the Eastern Tropical South Pacific Ocean and Arabian Sea have reported that heterotrophic nitrogen fixation is active in the OMZs. In this study, we investigated the community structure of diazotrophs in the OMZ of the Costa Rica Dome (CRD) upwelling region in the Eastern Tropical North Pacific Ocean, using 454-pyrosequencing of nifH gene amplicons. Comparing diazotroph assemblages in different depth strata of the OMZ (200-1000 m in depth), we found a unique diazotroph community in the OMZ core, which was mainly dominated by methanotroph-like diazotrophs, suggesting a potential coupling of nitrogen cycle and methane assimilation. In addition, some OTUs revealed in this study, especially those belonging to the large sub-cluster Vibrio diazotrophicus , were reported to be abundant and expressing the nifH gene in other OMZs. Our results suggest that the unique hydrographic conditions in OMZs may support similar assemblages of diazotrophs, and heterotrophic nitrogen fixation could also be occurring in our studied region. Our study provides the first insight into the composition and distribution of putative diazotrophs in the CRD OMZ.

Diversity and spatial distribution of hydrazine oxidoreductase (hzo) gene in the oxygen minimum zone off Costa Rica.

PubMed

Kong, Liangliang; Jing, Hongmei; Kataoka, Takafumi; Buchwald, Carolyn; Liu, Hongbin

2013-01-01

Anaerobic ammonia oxidation (anammox) as an important nitrogen loss pathway has been reported in marine oxygen minimum zones (OMZs), but the community composition and spatial distribution of anammox bacteria in the eastern tropical North Pacific (ETNP) OMZ are poorly determined. In this study, anammox bacterial communities in the OMZ off Costa Rica (CRD-OMZ) were analyzed based on both hydrazine oxidoreductase (hzo) genes and their transcripts assigned to cluster 1 and 2. The anammox communities revealed by hzo genes and proteins in CRD-OMZ showed a low diversity. Gene quantification results showed that hzo gene abundances peaked in the upper OMZs, associated with the peaks of nitrite concentration. Nitrite and oxygen concentrations may therefore colimit the distribution of anammox bacteria in this area. Furthermore, transcriptional activity of anammox bacteria was confirmed by obtaining abundant hzo mRNA transcripts through qRT-PCR. A novel hzo cluster 2x clade was identified by the phylogenetic analysis and these novel sequences were abundant and widely distributed in this environment. Our study demonstrated that both cluster 1 and 2 anammox bacteria play an active role in the CRD-OMZ, and the cluster 1 abundance and transcriptional activity were higher than cluster 2 in both free-living and particle-attached fractions at both gene and transcriptional levels.

Metaproteomics reveals differential modes of metabolic coupling among ubiquitous oxygen minimum zone microbes.

PubMed

Hawley, Alyse K; Brewer, Heather M; Norbeck, Angela D; Paša-Tolić, Ljiljana; Hallam, Steven J

2014-08-05

Marine oxygen minimum zones (OMZs) are intrinsic water column features arising from respiratory oxygen demand during organic matter degradation in stratified waters. Currently OMZs are expanding due to global climate change with resulting feedback on marine ecosystem function. Here we use metaproteomics to chart spatial and temporal patterns of gene expression along defined redox gradients in a seasonally stratified fjord to better understand microbial community responses to OMZ expansion. The expression of metabolic pathway components for nitrification, anaerobic ammonium oxidation (anammox), denitrification, and inorganic carbon fixation were differentially expressed across the redoxcline and covaried with distribution patterns of ubiquitous OMZ microbes including Thaumarchaeota, Nitrospina, Nitrospira, Planctomycetes, and SUP05/ARCTIC96BD-19 Gammaproteobacteria. Nitrification and inorganic carbon fixation pathways affiliated with Thaumarchaeota dominated dysoxic waters, and denitrification, sulfur oxidation, and inorganic carbon fixation pathways affiliated with the SUP05 group of nitrate-reducing sulfur oxidizers dominated suboxic and anoxic waters. Nitrifier nitrite oxidation and anammox pathways affiliated with Nirospina, Nitrospira, and Planctomycetes, respectively, also exhibited redox partitioning between dysoxic and suboxic waters. The numerical abundance of SUP05 proteins mediating inorganic carbon fixation under anoxic conditions suggests that SUP05 will become increasingly important in global ocean carbon and nutrient cycling as OMZs expand.

SAR11 bacteria linked to ocean anoxia and nitrogen loss

NASA Astrophysics Data System (ADS)

Tsementzi, Despina; Wu, Jieying; Deutsch, Samuel; Nath, Sangeeta; Rodriguez-R, Luis M.; Burns, Andrew S.; Ranjan, Piyush; Sarode, Neha; Malmstrom, Rex R.; Padilla, Cory C.; Stone, Benjamin K.; Bristow, Laura A.; Larsen, Morten; Glass, Jennifer B.; Thamdrup, Bo; Woyke, Tanja; Konstantinidis, Konstantinos T.; Stewart, Frank J.

2016-08-01

Bacteria of the SAR11 clade constitute up to one half of all microbial cells in the oxygen-rich surface ocean. SAR11 bacteria are also abundant in oxygen minimum zones (OMZs), where oxygen falls below detection and anaerobic microbes have vital roles in converting bioavailable nitrogen to N2 gas. Anaerobic metabolism has not yet been observed in SAR11, and it remains unknown how these bacteria contribute to OMZ biogeochemical cycling. Here, genomic analysis of single cells from the world’s largest OMZ revealed previously uncharacterized SAR11 lineages with adaptations for life without oxygen, including genes for respiratory nitrate reductases (Nar). SAR11 nar genes were experimentally verified to encode proteins catalysing the nitrite-producing first step of denitrification and constituted ~40% of OMZ nar transcripts, with transcription peaking in the anoxic zone of maximum nitrate reduction activity. These results link SAR11 to pathways of ocean nitrogen loss, redefining the ecological niche of Earth’s most abundant organismal group.

SAR11 bacteria linked to ocean anoxia and nitrogen loss.

PubMed

Tsementzi, Despina; Wu, Jieying; Deutsch, Samuel; Nath, Sangeeta; Rodriguez-R, Luis M; Burns, Andrew S; Ranjan, Piyush; Sarode, Neha; Malmstrom, Rex R; Padilla, Cory C; Stone, Benjamin K; Bristow, Laura A; Larsen, Morten; Glass, Jennifer B; Thamdrup, Bo; Woyke, Tanja; Konstantinidis, Konstantinos T; Stewart, Frank J

2016-08-11

Bacteria of the SAR11 clade constitute up to one half of all microbial cells in the oxygen-rich surface ocean. SAR11 bacteria are also abundant in oxygen minimum zones (OMZs), where oxygen falls below detection and anaerobic microbes have vital roles in converting bioavailable nitrogen to N2 gas. Anaerobic metabolism has not yet been observed in SAR11, and it remains unknown how these bacteria contribute to OMZ biogeochemical cycling. Here, genomic analysis of single cells from the world's largest OMZ revealed previously uncharacterized SAR11 lineages with adaptations for life without oxygen, including genes for respiratory nitrate reductases (Nar). SAR11 nar genes were experimentally verified to encode proteins catalysing the nitrite-producing first step of denitrification and constituted ~40% of OMZ nar transcripts, with transcription peaking in the anoxic zone of maximum nitrate reduction activity. These results link SAR11 to pathways of ocean nitrogen loss, redefining the ecological niche of Earth's most abundant organismal group.

SAR11 bacteria linked to ocean anoxia and nitrogen loss

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tsementzi, Despina; Wu, Jieying; Deutsch, Samuel

Bacteria of the SAR11 clade constitute up to one half of all microbial cells in the oxygen-rich surface ocean. SAR11 bacteria are also abundant in oxygen minimum zones (OMZs), where oxygen falls below detection and anaerobic microbes have vital roles in converting bioavailable nitrogen to N 2 gas. Anaerobic metabolism has not yet been observed in SAR11, and it remains unknown how these bacteria contribute to OMZ biogeochemical cycling. Here in this paper, genomic analysis of single cells from the world's largest OMZ revealed previously uncharacterized SAR11 lineages with adaptations for life without oxygen, including genes for respiratory nitrate reductasesmore » (Nar). SAR11 nar genes were experimentally verified to encode proteins catalysing the nitrite-producing first step of denitrification and constituted ~40% of OMZ nar transcripts, with transcription peaking in the anoxic zone of maximum nitrate reduction activity. Finally, these results link SAR11 to pathways of ocean nitrogen loss, redefining the ecological niche of Earth's most abundant organismal group.« less

SAR11 bacteria linked to ocean anoxia and nitrogen loss

DOE PAGES

Tsementzi, Despina; Wu, Jieying; Deutsch, Samuel; ...

2016-08-03

Bacteria of the SAR11 clade constitute up to one half of all microbial cells in the oxygen-rich surface ocean. SAR11 bacteria are also abundant in oxygen minimum zones (OMZs), where oxygen falls below detection and anaerobic microbes have vital roles in converting bioavailable nitrogen to N 2 gas. Anaerobic metabolism has not yet been observed in SAR11, and it remains unknown how these bacteria contribute to OMZ biogeochemical cycling. Here in this paper, genomic analysis of single cells from the world's largest OMZ revealed previously uncharacterized SAR11 lineages with adaptations for life without oxygen, including genes for respiratory nitrate reductasesmore » (Nar). SAR11 nar genes were experimentally verified to encode proteins catalysing the nitrite-producing first step of denitrification and constituted ~40% of OMZ nar transcripts, with transcription peaking in the anoxic zone of maximum nitrate reduction activity. Finally, these results link SAR11 to pathways of ocean nitrogen loss, redefining the ecological niche of Earth's most abundant organismal group.« less

The geochemical record of the last 17,000 years in the Guaymas Basin, Gulf of California

USGS Publications Warehouse

Dean, W.E.

2006-01-01

Sediments deposited on the western slope of the Guaymas Basin in the central Gulf of California are composed predominantly of detrital clastic material and biogenic silica (biopal), with minor organic material (average of 2.8% organic carbon) and calcium carbonate. The CaCO3 is derived from calcareous plankton and is highly variable ranging from 0% to 16%. In general, the CaCO3 content of the sediments varies inversely with the biopal content, reflecting the relative abundance of calcareous and siliceous plankton in the photic zone. Siliceous plankton dominate when winds are predominantly out of the northwest producing strong upwelling. Calcareous plankton indicates weak southeasterly winds that bring warm, tropical Pacific surface water into the Gulf. Based mainly on relative abundances of biopal and CaCO3, the sediments deposited over the last 17,000 years in the western Guaymas Basin can be divided into five intervals. In general, the sediments in the intervals with high biopal and low CaCO3 are laminated, but this is not always true. Unlike most other continental margins of the world with well-developed oxygen minimum zones where highest concentrations of organic carbon and redox-sensitive trace metals occur in laminated sediments, the laminated sediments on the anoxic slope of the western Guaymas Basin do not always have the highest concentrations of organic carbon and trace metals such as Mo and Cd.

Oceanography. Centennial changes in North Pacific anoxia linked to tropical trade winds.

PubMed

Deutsch, Curtis; Berelson, William; Thunell, Robert; Weber, Thomas; Tems, Caitlin; McManus, James; Crusius, John; Ito, Taka; Baumgartner, Timothy; Ferreira, Vicente; Mey, Jacob; van Geen, Alexander

2014-08-08

Climate warming is expected to reduce oxygen (O2) supply to the ocean and expand its oxygen minimum zones (OMZs). We reconstructed variations in the extent of North Pacific anoxia since 1850 using a geochemical proxy for denitrification (δ(15)N) from multiple sediment cores. Increasing δ(15)N since ~1990 records an expansion of anoxia, consistent with observed O2 trends. However, this was preceded by a longer declining δ(15)N trend that implies that the anoxic zone was shrinking for most of the 20th century. Both periods can be explained by changes in winds over the tropical Pacific that drive upwelling, biological productivity, and O2 demand within the OMZ. If equatorial Pacific winds resume their predicted weakening trend, the ocean's largest anoxic zone will contract despite a global O2 decline. Copyright © 2014, American Association for the Advancement of Science.

Molluscan and Foraminiferan Paleoecological Reconstructions of Extreme Post-Glacial Seafloor Environments of the California Borderland

NASA Astrophysics Data System (ADS)

Moffitt, S. E.; Hill, T. M.; Kroeker, K.; Roopnarine, P. D.; Kennett, J.

2014-12-01

We have reconstructed paleoecological and climatic change in a Late Quaternary (16.1-3.4 ka) sediment core from the California margin (418 meters below sea level) of Santa Barbara Basin using quantitative analyses of Molluscan and Foraminiferan microfossils. This archive represents the first record of marine metazoan community ecology, and a comparison to a well-established biotic proxy (Foraminifera), through the climatic and oceanographic events of the most recent deglaciation. The high-resolution seafloor archive reveals strong coupling between orbital and millennial climatic episodes and the structure of shallow ocean ecosystems. Changes in the density and diversity of molluscs and foraminifera exhibit clear associations with climatic events that mark the deglacial episode, including rapid expansions and contractions of the Oxygen Minimum Zone and development of chemosynthetic bacterial mat communities. Molluscans occur discontinuously in only 28% of the sediment sequence, whereas foraminifera occur throughout. Multivariate statistical analyses of the community ecology assist with the interpretations of the multi-species paleoecological data and of processes that caused the variability. A surprising dominance of molluscan extremophiles (sulfidic Astrys permodesta and hypoxic Lucinoma aequizonatum) during cool, well oxygenated intervals reveals how such forms can thrive during inferred brief ephemeral extreme events. Hydrographic variability and bottom water flow, as well as the growth of benthic bacterial communities, determine where such extremophile communities dominate.

Carfilzomib With or Without Rituximab in the Treatment of Waldenstrom Macroglobulinemia or Marginal Zone Lymphoma

ClinicalTrials.gov

2018-02-05

Marginal Zone Lymphoma; Recurrent Marginal Zone Lymphoma; Recurrent Waldenstrom Macroglobulinemia; Refractory Marginal Zone Lymphoma; Refractory Waldenstrom Macroglobulinemia; Waldenstrom Macroglobulinemia

Activity and diversity of aerobic methanotrophs in a coastal marine oxygen minimum zone

NASA Astrophysics Data System (ADS)

Padilla, C. C.; Bristow, L. A.; Sarode, N. D.; Garcia-Robledo, E.; Girguis, P. R.; Thamdrup, B.; Stewart, F. J.

2016-02-01

The pelagic ocean is a sink for the potent greenhouse gas methane, with methane consumption regulated primarily by aerobic methane-oxidizing bacteria (MOB). Marine oxygen minimum zones (OMZs) contain the largest pool of pelagic methane in the oceans but remain largely unexplored for their potential to harbor MOB communities and contribute to methane cycling. Here, we present meta-omic and geochemical evidence that aerobic MOB are present and active in a coastal OMZ, in Golfo Dulce, Costa Rica. Oxygen concentrations were < 50 nM below 85 m, and sulfide accumulated below 140 m, with methane concentrations ranging from trace levels above the oxycline to 78 nM at 180 m. The upper OMZ (90 m) was characterized by an abundant MOB and methylotroph community representing diverse lineages of the Methylophilaceae, Methylophaga, and Methylococcales. Of these, Type I methanotrophs of the Order Methylococcales dominated , representing >5% of total 16S rRNA genes and >19% of 16S rRNA transcripts. This peak in ribosomal abundance and activity was affiliated with methane oxidation rates of 2.6 ± 0.7 nM d-1, measured in seawater incubations with estimated O2 concentrations of 50 nM. Rates fell to zero with the addition of acetylene, an inhibitor of aerobic methanotrophy. In contrast, methane oxidation was below detection at lower depths in the OMZ (100 m and 120 m). Metatranscriptome sequencing indicated a peak at 90 m in the expression of pathways essential to Methylococcales, including aerobic methanotrophy and the RuMP pathway of carbon assimilation, as well as the serine pathway of Type II methanotrophs. Preliminary analysis of single-cell genomes suggests distinct adaptations by Methylococcales from the Golfo Dulce, helping explain the persistence of putative aerobic methanotrophs under very low oxygen in this OMZ. Taken together, these data suggest the boundary layers of OMZs, despite extreme oxygen depletion, are a niche for aerobic MOBs and therefore potentially important zones of pelagic methane loss.

Distribution and ecophysiology of calanoid copepods in relation to the oxygen minimum zone in the eastern tropical atlantic.

PubMed

Teuber, Lena; Schukat, Anna; Hagen, Wilhelm; Auel, Holger

2013-01-01

Oxygen minimum zones (OMZs) affect distribution patterns, community structure and metabolic processes of marine organisms. Due to the prominent role of zooplankton, especially copepods, in the marine carbon cycle and the predicted intensification and expansion of OMZs, it is essential to understand the effects of hypoxia on zooplankton distribution and ecophysiology. For this study, calanoid copepods were sampled from different depths (0-1800 m) at eight stations in the eastern tropical Atlantic (3 °47'N to 18 °S) during three expeditions in 2010 and 2011. Their horizontal and vertical distribution was determined and related to the extent and intensity of the OMZ, which increased from north to south with minimum O2 concentrations (12.7 µmol kg(-1)) in the southern Angola Gyre. Calanoid copepod abundance was highest in the northeastern Angola Basin and decreased towards equatorial regions as well as with increasing depth. Maximum copepod biodiversity was observed in the deep waters of the central Angola Basin. Respiration rates and enzyme activities were measured to reveal species-specific physiological adaptations. Enzyme activities of the electron transport system (ETS) and lactate dehydrogenase (LDH) served as proxies for aerobic and anaerobic metabolic activity, respectively. Mass-specific respiration rates and ETS activities decreased with depth of occurrence, consistent with vertical changes in copepod body mass and ambient temperature. Copepods of the families Eucalanidae and Metridinidae dominated within the OMZ. Several of these species showed adaptive characteristics such as lower metabolic rates, additional anaerobic activity and diel vertical migration that enable them to successfully inhabit hypoxic zones.

Distribution and Ecophysiology of Calanoid Copepods in Relation to the Oxygen Minimum Zone in the Eastern Tropical Atlantic

PubMed Central

Teuber, Lena; Schukat, Anna; Hagen, Wilhelm; Auel, Holger

2013-01-01

Oxygen minimum zones (OMZs) affect distribution patterns, community structure and metabolic processes of marine organisms. Due to the prominent role of zooplankton, especially copepods, in the marine carbon cycle and the predicted intensification and expansion of OMZs, it is essential to understand the effects of hypoxia on zooplankton distribution and ecophysiology. For this study, calanoid copepods were sampled from different depths (0–1800 m) at eight stations in the eastern tropical Atlantic (3°47′N to 18°S) during three expeditions in 2010 and 2011. Their horizontal and vertical distribution was determined and related to the extent and intensity of the OMZ, which increased from north to south with minimum O2 concentrations (12.7 µmol kg−1) in the southern Angola Gyre. Calanoid copepod abundance was highest in the northeastern Angola Basin and decreased towards equatorial regions as well as with increasing depth. Maximum copepod biodiversity was observed in the deep waters of the central Angola Basin. Respiration rates and enzyme activities were measured to reveal species-specific physiological adaptations. Enzyme activities of the electron transport system (ETS) and lactate dehydrogenase (LDH) served as proxies for aerobic and anaerobic metabolic activity, respectively. Mass-specific respiration rates and ETS activities decreased with depth of occurrence, consistent with vertical changes in copepod body mass and ambient temperature. Copepods of the families Eucalanidae and Metridinidae dominated within the OMZ. Several of these species showed adaptive characteristics such as lower metabolic rates, additional anaerobic activity and diel vertical migration that enable them to successfully inhabit hypoxic zones. PMID:24223716

Oxygen minimum zones in the eastern tropical Atlantic and Pacific oceans

NASA Astrophysics Data System (ADS)

Karstensen, Johannes; Stramma, Lothar; Visbeck, Martin

2008-06-01

Within the eastern tropical oceans of the Atlantic and Pacific basin vast oxygen minimum zones (OMZ) exist in the depth range between 100 and 900 m. Minimum oxygen values are reached at 300-500 m depth which in the eastern Pacific become suboxic (dissolved oxygen content <4.5 μmol kg -1) with dissolved oxygen concentration of less than 1 μmol kg -1. The OMZ of the eastern Atlantic is not suboxic and has relatively high oxygen minimum values of about 17 μmol kg -1 in the South Atlantic and more than 40 μmol kg -1 in the North Atlantic. About 20 (40%) of the North Pacific volume is occupied by an OMZ when using 45 μmol kg -1 (or 90 μmol kg -1, respectively) as an upper bound for OMZ oxygen concentration for ocean densities lighter than σθ < 27.2 kg m -3. The relative volumes reduce to less than half for the South Pacific (7% and 13%, respectively). The abundance of OMZs are considerably smaller (1% and 7%) for the South Atlantic and only ∼0% and 5% for the North Atlantic. Thermal domes characterized by upward displacements of isotherms located in the northeastern Pacific and Atlantic and in the southeastern Atlantic are co-located with the centres of the OMZs. They seem not to be directly involved in the generation of the OMZs. OMZs are a consequence of a combination of weak ocean ventilation, which supplies oxygen, and respiration, which consumes oxygen. Oxygen consumption can be approximated by the apparent oxygen utilization (AOU). However, AOU scaled with an appropriate consumption rate (aOUR) gives a time, the oxygen age. Here we derive oxygen ages using climatological AOU data and an empirical estimate of aOUR. Averaging oxygen ages for main thermocline isopycnals of the Atlantic and Pacific Ocean exhibit an exponential increase with density without an obvious signature of the OMZs. Oxygen supply originates from a surface outcrop area and can also be approximated by the turn-over time, the ratio of ocean volume to ventilating flux. The turn-over time corresponds well to the average oxygen ages for the well ventilated waters. However, in the density ranges of the suboxic OMZs the turn-over time substantially increases. This indicates that reduced ventilation in the outcrop is directly related to the existence of suboxic OMZs, but they are not obviously related to enhanced consumption indicated by the oxygen ages. The turn-over time suggests that the lower thermocline of the North Atlantic would be suboxic but at present this is compensated by the import of water from the well ventilated South Atlantic. The turn-over time approach itself is independent of details of ocean transport pathways. Instead the geographical location of the OMZ is to first order determined by: (i) the patterns of upwelling, either through Ekman or equatorial divergence, (ii) the regions of general sluggish horizontal transport at the eastern boundaries, and (iii) to a lesser extent to regions with high productivity as indicated through ocean colour data.

Microbial community phylogenetic and trait diversity declines with depth in a marine oxygen minimum zone.

PubMed

Bryant, Jessica A; Stewart, Frank J; Eppley, John M; DeLong, Edward F

2012-07-01

Oxygen minimum zones (OMZs) are natural physical features of the world's oceans. They create steep physiochemical gradients in the water column, which most notably include a dramatic draw down in oxygen concentrations over small vertical distances (<100 m). Microbial communities within OMZs play central roles in ocean and global biogeochemical cycles, yet we still lack a fundamental understanding of how microbial biodiversity is distributed across OMZs. Here, we used metagenomic sequencing to investigate microbial diversity across a vertical gradient in the water column during three seasons in the Eastern Tropical South Pacific (ETSP) OMZ. Based on analysis of small subunit ribosomal RNA (SSU rRNA) gene fragments, we found that both taxonomic and phylogenetic diversity declined steeply along the transition from oxygen-rich surface water to the permanent OMZ. We observed similar declines in the diversity of protein-coding gene categories, suggesting a decrease in functional (trait) diversity with depth. Metrics of functional and trait dispersion indicated that microbial communities are phylogenetically and functionally more overdispersed in oxic waters, but clustered within the OMZ. These dispersion patterns suggest that community assembly drivers (e.g., competition, environmental filtering) vary strikingly across the oxygen gradient. To understand the generality of our findings, we compared OMZ results to two marine depth gradients in subtropical oligotrophic sites and found that the oligotrophic sites did not display similar patterns, likely reflecting unique features found in the OMZ. Finally, we discuss how our results may relate to niche theory, diversity-energy relationships and stress gradients.

Ammonium excretion and oxygen respiration of tropical copepods and euphausiids exposed to oxygen minimum zone conditions

NASA Astrophysics Data System (ADS)

Kiko, R.; Hauss, H.; Buchholz, F.; Melzner, F.

2015-10-01

Calanoid copepods and euphausiids are key components of marine zooplankton communities worldwide. Most euphausiids and several copepod species perform diel vertical migrations (DVMs) that contribute to the export of particulate and dissolved matter to midwater depths. In vast areas of the global ocean, and in particular in the eastern tropical Atlantic and Pacific, the daytime distribution depth of many migrating organisms corresponds to the core of the oxygen minimum zone (OMZ). At depth, the animals experience reduced temperature and oxygen partial pressure (pO2) and an increased carbon dioxide partial pressure (pCO2) compared to their near-surface nighttime habitat. Although it is well known that low oxygen levels can inhibit respiratory activity, the respiration response of tropical copepods and euphausiids to relevant pCO2, pO2 and temperature conditions remains poorly parameterized. Further, the regulation of ammonium excretion at OMZ conditions is generally not well understood. It was recently estimated that DVM-mediated ammonium supply considerably fuels bacterial anaerobic ammonium oxidation - a major loss process for fixed nitrogen in the ocean. These estimates were based on the implicit assumption that hypoxia or anoxia in combination with hypercapnia (elevated pCO2) does not result in a downregulation of ammonium excretion. Here we show that exposure to OMZ conditions can result in strong depression of respiration and ammonium excretion in calanoid copepods and euphausiids from the Eastern Tropical North Atlantic and the Eastern Tropical South Pacific. These physiological responses need to be taken into account when estimating DVM-mediated fluxes of carbon and nitrogen into OMZs.

Do submesoscale frontal processes ventilate the oxygen minimum zone off Peru?

NASA Astrophysics Data System (ADS)

Thomsen, S.; Kanzow, T.; Colas, F.; Echevin, V.; Krahmann, G.; Engel, A.

2016-02-01

The Peruvian upwelling region shows pronounced near-surface submesoscale variability including filaments and sharp density fronts. Submesoscale frontal processes can drive large vertical velocities and enhance vertical tracer fluxes in the upper ocean. The associated high temporal and spatial variability poses a large challenge to observational approaches targeting these processes. In this study the role of submesoscale processes for the ventilation of the near-coastal oxygen minimum zone off Peru is investigated. We use satellite based sea surface temperature measurements and multiple high-resolution glider observations of temperature, salinity, oxygen and chlorophyll fluorescence carried out in January and February 2013 off Peru near 14°S during active upwelling. Additionally, high-resolution regional ocean circulation model outputs (ROMS) outputs are analysed. At the beginning of our observational survey a previously upwelled, productive and highly oxygenated water body is found in the mixed layer. Subsequently, a cold filament forms and the waters are moved offshore. After the decay of the filament and the relaxation of the upwelling front, the oxygen enriched surface water is found in the previously less oxygenated thermocline suggesting the occurrence of frontal subduction. A numerical model simulation is used to analyse the evolution of Lagrangian numerical floats in several upwelling filaments, whose vertical structure and hydrographic properties agree well with the observations. The floats trajectories support our interpretation that the subduction of previously upwelled water occurs in filaments off Peru. We find that 40 - 60 % of the floats seeded in the newly upwelled water is subducted within a time period of 5 days. This hightlights the importance of this process in ventilating the oxycline off Peru.

Habitat Parameters for Oxygen Minimum Zone Copepods from the Eastern Tropical North Pacific

NASA Astrophysics Data System (ADS)

Wishner, K. F.; Outram, D.; Grassian, B.

2016-02-01

Oxygen minimum zones (OMZs) affect zooplankton distributions and may be expanding in worldwide spatial and vertical extent from climate change. We studied zooplankton (especially copepod) distributions in the Eastern Tropical North Pacific (ETNP) OMZ, using day-night vertically-stratified MOCNESS tows (0-1000m). Habitat parameters (temperature, oxygen, depth) were defined for abundant copepod species and groups. Zooplankton layers, with a unique suite of species, occurred at upper and lower OMZ oxyclines. At the mesopelagic lower oxycline, there was a layer with a characteristic species assemblage and a sharp 10X biomass increase compared to nearby depths. The lower oxycline layer occurred within a narrow very low oxygen concentration (2µM). At two stations with different OMZ vertical extents, the lower oxycline layer depth changed with OMZ thickness, remaining at the same oxygen concentration but different temperature. Life history habitat (diapause depth, temperature) of the copepod Eucalanus inermis was also affected. In the upper water column at the two stations, large diel vertical migrators (fish, euphausiids) descended to taxon-specific daytime depths in the mid OMZ, regardless of oxygen level, but copepod species distributions showed more variability and sensitivity to habitat parameters. We predict that, with moderate OMZ expansion, the lower oxycline community will likely shift depth, thus re-distributing midwater biomass, species, and processes. In the upper water column, large vertical migrator distributions may be less affected, while smaller taxa (copepods) will likely be sensitive to habitat changes. At some point, the ability to withstand these changes may be exceeded for particular taxa, with consequences for assemblages, trophic webs, and export. In keeping with the session theme, we hope to compare our oceanic findings with others' results from coastal hypoxic situations.

Oxygen distribution and aerobic respiration in the north and south eastern tropical Pacific oxygen minimum zones

NASA Astrophysics Data System (ADS)

Tiano, Laura; Garcia-Robledo, Emilio; Dalsgaard, Tage; Devol, Allan H.; Ward, Bess B.; Ulloa, Osvaldo; Canfield, Donald E.; Peter Revsbech, Niels

2014-12-01

Highly sensitive STOX O2 sensors were used for determination of in situ O2 distribution in the eastern tropical north and south Pacific oxygen minimum zones (ETN/SP OMZs), as well as for laboratory determination of O2 uptake rates of water masses at various depths within these OMZs. Oxygen was generally below the detection limit (few nmol L-1) in the core of both OMZs, suggesting the presence of vast volumes of functionally anoxic waters in the eastern Pacific Ocean. Oxygen was often not detectable in the deep secondary chlorophyll maximum found at some locations, but other secondary maxima contained up to 0.4 μmol L-1. Directly measured respiration rates were high in surface and subsurface oxic layers of the coastal waters, reaching values up to 85 nmol L-1 O2 h-1. Substantially lower values were found at the depths of the upper oxycline, where values varied from 2 to 33 nmol L-1 O2 h-1. Where secondary chlorophyll maxima were found the rates were higher than in the oxic water just above. Incubation times longer than 20 h, in the all-glass containers, resulted in highly increased respiration rates. Addition of amino acids to the water from the upper oxycline did not lead to a significant initial rise in respiration rate within the first 20 h, indicating that the measurement of respiration rates in oligotrophic Ocean water may not be severely affected by low levels of organic contamination during sampling. Our measurements indicate that aerobic metabolism proceeds efficiently at extremely low oxygen concentrations with apparent half-saturation concentrations (Km values) ranging from about 10 to about 200 nmol L-1.

A model study of warming-induced phosphorus-oxygen feedbacks in open-ocean oxygen minimum zones on millennial timescales

NASA Astrophysics Data System (ADS)

Niemeyer, Daniela; Kemena, Tronje P.; Meissner, Katrin J.; Oschlies, Andreas

2017-05-01

Observations indicate an expansion of oxygen minimum zones (OMZs) over the past 50 years, likely related to ongoing deoxygenation caused by reduced oxygen solubility, changes in stratification and circulation, and a potential acceleration of organic matter turnover in a warming climate. The overall area of ocean sediments that are in direct contact with low-oxygen bottom waters also increases with expanding OMZs. This leads to a release of phosphorus from ocean sediments. If anthropogenic carbon dioxide emissions continue unabated, higher temperatures will cause enhanced weathering on land, which, in turn, will increase the phosphorus and alkalinity fluxes into the ocean and therefore raise the ocean's phosphorus inventory even further. A higher availability of phosphorus enhances biological production, remineralisation and oxygen consumption, and might therefore lead to further expansions of OMZs, representing a positive feedback. A negative feedback arises from the enhanced productivity-induced drawdown of carbon and also increased uptake of CO2 due to weathering-induced alkalinity input. This feedback leads to a decrease in atmospheric CO2 and weathering rates. Here, we quantify these two competing feedbacks on millennial timescales for a high CO2 emission scenario. Using the University of Victoria (UVic) Earth System Climate Model of intermediate complexity, our model results suggest that the positive benthic phosphorus release feedback has only a minor impact on the size of OMZs in the next 1000 years. The increase in the marine phosphorus inventory under assumed business-as-usual global warming conditions originates, on millennial timescales, almost exclusively (> 80 %) from the input via terrestrial weathering and causes a 4- to 5-fold expansion of the suboxic water volume in the model.

Pembrolizumab Alone or With Idelalisib or Ibrutinib in Treating Patients With Relapsed or Refractory Chronic Lymphocytic Leukemia or Other Low-Grade B-Cell Non-Hodgkin Lymphomas

ClinicalTrials.gov

2017-06-30

Recurrent Chronic Lymphocytic Leukemia; Recurrent Extranodal Marginal Zone Lymphoma of Mucosa-Associated Lymphoid Tissue; Recurrent Grade 1 Follicular Lymphoma; Recurrent Grade 2 Follicular Lymphoma; Recurrent Grade 3 Follicular Lymphoma; Recurrent Lymphoplasmacytic Lymphoma; Recurrent Marginal Zone Lymphoma; Recurrent Nodal Marginal Zone Lymphoma; Recurrent Small Lymphocytic Lymphoma; Recurrent Splenic Marginal Zone Lymphoma; Refractory Chronic Lymphocytic Leukemia; Refractory Extranodal Marginal Zone Lymphoma of Mucosa-Associated Lymphoid Tissue; Refractory Follicular Lymphoma; Refractory Lymphoplasmacytic Lymphoma; Refractory Nodal Marginal Zone Lymphoma; Refractory Small Lymphocytic Lymphoma; Refractory Splenic Marginal Zone Lymphoma; Richter Syndrome; Waldenstrom Macroglobulinemia

Polychaete community structure in the South Eastern Arabian Sea continental margin (200-1000 m)

NASA Astrophysics Data System (ADS)

Abdul Jaleel, K. U.; Anil Kumar, P. R.; Nousher Khan, K.; Correya, Neil S.; Jacob, Jini; Philip, Rosamma; Sanjeevan, V. N.; Damodaran, R.

2014-11-01

Macrofaunal polychaete communities (>500 μm) in the South Eastern Arabian Sea (SEAS) continental margin (200-1000 m) are described, based on three systematic surveys carried out in 9 transects (at ~200 m, 500 m and 1000 m) between 7°00‧and 14°30‧N latitudes. A total of 7938 polychaetes belonging to 195 species were obtained in 136 grab samples collected at 27 sites. Three distinct assemblages were identified in the northern part of the SEAS margin (10-14°30‧N), occupying the three sampled depth strata (shelf edge, upper and mid-slope) and two assemblages (shelf edge and slope) in the south (7-10°N). Highest density of polychaetes and dominance of a few species were observed in the shelf edge, where the Arabian Sea oxygen minimum zone (OMZ) impinged on the seafloor, particularly in the northern transects. The resident fauna in this region (Cossura coasta, Paraonis gracilis, Prionospio spp. and Tharyx spp.) were characteristically of smaller size, and well suited to thrive in the sandy sediments in OMZ settings. Densities were lowest along the most northerly transect (T9), where dissolved oxygen (DO) concentrations were extremely low (<0.15 ml l-1, i.e.<6.7 μmol l-1). Beyond the realm of influence of the OMZ (i.e. mid-slope, ~1000 m), the faunal density decreased while species diversity increased. The relative proportion of silt increased with depth, and the dominance of the aforementioned species decreased, giving way to forms such as Paraprionospio pinnata, Notomastus sp., Eunoe sp. and lumbrinerids. Relatively high species richness and diversity were observed in the sandy sediments of the southern sector (7-9°N), where influence of the OMZ was less intense. The area was also characterized by certain species (e.g. Aionidella cirrobranchiata, Isolda pulchella) that were nearly absent in the northern region. The gradients in DO concentration across the core and lower boundary of the OMZ, along with bathymetric and latitudinal variation in sediment texture, were responsible for differences in polychaete size and community structure on the SEAS margin. Spatial and temporal variations were observed in organic matter (OM) content of the sediment, but these were not reflected in the density, diversity or distribution pattern of the polychaetes.

Inorganic geochemical indicators of glacial-interglacial changes in productivity and anoxia on the California continental margin

USGS Publications Warehouse

Dean, W.E.; Gardner, J.V.; Piper, D.Z.

1997-01-01

Evidence from sediments in cores collected from within the present oxygen-minimum zone (OMZ; 600-1200 m) on the central and northern California margins record several episodes during the last interstadial (OIS-3, ca. 60-24 ka) of deposition of laminated sediments containing elevated concentrations of several trace elements indicative of anoxic conditions (e.g., Mo, Ni, Zn, and Cu). The presence of abundant well-preserved organic matter, as well as lack of bioturbation and the presence of elevated concentrations of Mo and other trace elements, all support the theory that the OMZ in the northeastern Pacific Ocean was more intense, possibly anoxic, at several times during the late Pleistocene. Sediments of all ages in cores from the southern California margin contain elevated concentrations of Mo, suggesting that this area has always had higher rates of sulfate reduction than either the central or northern California areas. Most of the Ba in sediments in all cores collected on the upper continental slope (200-2700 m) off California and southern Oregon is derived from detrital clastic material, and this source did not change much in time. However, the amount of biogenic Ba did vary with time, and these variations closely follow the temporal variations in organic C (Corg) mass accumulation rate. Using Ba and Corg mass accumulation rates as proxy variables for productivity, all cores show that organic productivity under the California Current upwelling system was highest during OIS-3 and the Holocene, and lowest during the last glacial interval (LGI, ca. 24-10 ka). All paleoproductivity proxy variables indicate that the southern California area has always experienced higher productivity than other areas under the California Current, at least over the last 50 ky. Copyright ?? 1997 Elsevier Science Ltd.

Nitrite oxidation in the Namibian oxygen minimum zone

PubMed Central

Füssel, Jessika; Lam, Phyllis; Lavik, Gaute; Jensen, Marlene M; Holtappels, Moritz; Günter, Marcel; Kuypers, Marcel MM

2012-01-01

Nitrite oxidation is the second step of nitrification. It is the primary source of oceanic nitrate, the predominant form of bioavailable nitrogen in the ocean. Despite its obvious importance, nitrite oxidation has rarely been investigated in marine settings. We determined nitrite oxidation rates directly in 15N-incubation experiments and compared the rates with those of nitrate reduction to nitrite, ammonia oxidation, anammox, denitrification, as well as dissimilatory nitrate/nitrite reduction to ammonium in the Namibian oxygen minimum zone (OMZ). Nitrite oxidation (⩽372 nM NO2− d−1) was detected throughout the OMZ even when in situ oxygen concentrations were low to non-detectable. Nitrite oxidation rates often exceeded ammonia oxidation rates, whereas nitrate reduction served as an alternative and significant source of nitrite. Nitrite oxidation and anammox co-occurred in these oxygen-deficient waters, suggesting that nitrite-oxidizing bacteria (NOB) likely compete with anammox bacteria for nitrite when substrate availability became low. Among all of the known NOB genera targeted via catalyzed reporter deposition fluorescence in situ hybridization, only Nitrospina and Nitrococcus were detectable in the Namibian OMZ samples investigated. These NOB were abundant throughout the OMZ and contributed up to ∼9% of total microbial community. Our combined results reveal that a considerable fraction of the recently recycled nitrogen or reduced NO3− was re-oxidized back to NO3− via nitrite oxidation, instead of being lost from the system through the anammox or denitrification pathways. PMID:22170426

El Niño and similar perturbation effects on the benthos of the Humboldt, California, and Benguela Current upwelling ecosystems

NASA Astrophysics Data System (ADS)

Arntz, W. E.; Gallardo, V. A.; Gutiérrez, D.; Isla, E.; Levin, L. A.; Mendo, J.; Neira, C.; Rowe, G. T.; Tarazona, J.; Wolff, M.

2006-03-01

To a certain degree, Eastern Boundary Current (EBC) ecosystems are similar: Cold bottom water from moderate depths, rich in nutrients, is transported to the euphotic zone by a combination of trade winds, Coriolis force and Ekman transport. The resultant high primary production fuels a rich secondary production in the upper pelagic and nearshore zones, but where O2 exchange is restricted, it creates oxygen minimum zones (OMZs) at shelf and upper slope (Humboldt and Benguela Current) or slope depths (California Current). These hypoxic zones host a specifically adapted, small macro- and meiofauna together with giant sulphur bacteria that use nitrate to oxydise H2S. In all EBC, small polychaetes, large nematodes and other opportunistic benthic species have adapted to the hypoxic conditions and co-exist with sulphur bacteria, which seem to be particularly dominant off Peru and Chile. However, a massive reduction of macrobenthos occurs in the core of the OMZ. In the Humboldt Current area the OMZ ranges between <100 and about 600 m, with decreasing thickness in a poleward direction. The OMZ merges into better oxygenated zones towards the deep sea, where large cold-water mega- and macrofauna occupy a dominant role as in the nearshore strip. The Benguela Current OMZ has a similar upper limit but remains shallower. It also hosts giant sulphur bacteria but little is known about the benthic fauna. However, sulphur eruptions and intense hypoxia might preclude the coexistence of significant mega- und macrobenthos. Conversely, off North America the upper limit of the OMZ is considerably deeper (e.g., 500-600 m off California and Oregon), and the lower boundary may exceed 1000m. The properties described are valid for very cold and cold (La Niña and "normal") ENSO conditions with effective upwelling of nutrient-rich bottom water. During warm (El Niño) episodes, warm water masses of low oxygen concentration from oceanic and equatorial regions enter the upwelling zones, bringing a variety of (sub)tropical immigrants. The autochthonous benthic fauna emigrates to deeper water or poleward, or suffers mortality. However, some local macrofaunal species experience important population proliferations, presumably due to improved oxygenation (in the southern hemisphere), higher temperature tolerance, reduced competition or the capability to use different food. Both these negative and positive effects of El Niño influence local artisanal fisheries and the livelihood of coastal populations. In the Humboldt Current system the hypoxic seafloor at outer shelf depths receives important flushing from the equatorial zone, causing havoc on the sulphur bacteria mats and immediate recolonisation of the sediments by mega- and macrofauna. Conversely, off California, the intruding equatorial water masses appear to have lower oxygen than ambient waters, and may cause oxygen deficiency at upper slope depths. Effects of this change have not been studied in detail, although shrimp and other taxa appear to alter their distribution on the continental margin. Other properties and reactions of the two Pacific EBC benthic ecosystems to El Niño seem to differ, too, as does the overall impact of major episodes (e.g., 1982/1983(1984) vs. 1997/1998). The relation of the "Benguela Niño" to ENSO seems unclear although many Pacific-Atlantic ocean and atmosphere teleconnections have been described. Warm, low-oxygen equatorial water seems to be transported into the upwelling area by similar mechanisms as in the Pacific, but most major impacts on the eukaryotic biota obviously come from other, independent perturbations such as an extreme eutrophication of the sediments ensuing in sulphidic eruptions and toxic algal blooms. Similarities and differences of the Humboldt and California Current benthic ecosystems are discussed with particular reference to ENSO impacts since 1972/73. Where there are data available, the authors include the Benguela Current ecosystem as another important, non-Pacific EBC, which also suffers from the effects of hypoxia.

Modern and ancient geochemical constraints on Proterozoic atmosphere-ocean redox evolution

NASA Astrophysics Data System (ADS)

Hardisty, D. S.; Horner, T. J.; Wankel, S. D.; Lu, Z.; Lyons, T.; Nielsen, S.

2017-12-01

A detailed understanding of the spatiotemporal oxygenation of Earth's atmosphere-ocean system through the Precambrian has important implications for the environments capable of sustaining early eukaryotic life and the evolving oxidant budget of subducted sediments. Proxy records suggest an anoxic Fe-rich deep ocean through much of the Precambrian and atmospheric and surface-ocean oxygenation that started in earnest at the Paleoproterozoic Great Oxidation Event (GOE). The marine photic zone represented the initial site of oxygen production and accumulation via cyanobacteria, yet our understanding of surface-ocean oxygen contents and the extent and timing of oxygen propagation and exchange between the atmosphere and deeper ocean are limited. Here, we present an updated perspective of the constraints on atmospheric, surface-ocean, and deep-ocean oxygen contents starting at the GOE. Our research uses the iodine content of Proterozoic carbonates as a tracer of dissolved iodate in the shallow ocean, a redox-sensitive species quantitatively reduced in modern oxygen minimum zones. We supplement our understanding of the ancient record with novel experiments examining the rates of iodate production from oxygenated marine environments based on seawater incubations. Combining new data from iodine with published shallow marine (Ce anomaly, N isotopes) and atmospheric redox proxies, we provide an integrated view of the vertical redox structure of the atmosphere and ocean across the Proterozoic.

Faunal responses to oxygen gradients on the Pakistan margin: A comparison of foraminiferans, macrofauna and megafauna

NASA Astrophysics Data System (ADS)

Gooday, A. J.; Levin, L. A.; Aranda da Silva, A.; Bett, B. J.; Cowie, G. L.; Dissard, D.; Gage, J. D.; Hughes, D. J.; Jeffreys, R.; Lamont, P. A.; Larkin, K. E.; Murty, S. J.; Schumacher, S.; Whitcraft, C.; Woulds, C.

2009-03-01

The Pakistan Margin is characterised by a strong mid-water oxygen minimum zone (OMZ) that intercepts the seabed at bathyal depths (150-1300 m). We investigated whether faunal abundance and diversity trends were similar among protists (foraminiferans and gromiids), metazoan macrofauna and megafauna along a transect (140-1850 m water depth) across the OMZ during the 2003 intermonsoon (March-May) and late/post-monsoon (August-October) seasons. All groups exhibited some drop in abundance in the OMZ core (250-500 m water depth; O 2: 0.10-0.13 mL L -1=4.46-5.80 μM) but to differing degrees. Densities of foraminiferans >63 μm were slightly depressed at 300 m, peaked at 738 m, and were much lower at deeper stations. Foraminiferans >300 μm were the overwhelmingly dominant macrofaunal organisms in the OMZ core. Macrofaunal metazoans reached maximum densities at 140 m depth, with additional peaks at 850, 940 and 1850 m where foraminiferans were less abundant. The polychaete Linopherus sp. was responsible for a macrofaunal biomass peak at 950 m. Apart from large swimming animals (fish and natant decapods), metazoan megafauna were absent between 300 and 900 m (O 2 <0.14-0.15 mL L -1=6.25-6.69 μM) but were represented by a huge, ophiuroid-dominated abundance peak at 1000 m (O 2 ˜0.15-0.18 mL L -1=6.69-8.03 μM). Gromiid protists were confined largely to depths below 1150 m (O 2 >0.2 mL L -1=8.92 μM). The progressively deeper abundance peaks for foraminiferans (>63 μm), Linopherus sp. and ophiuroids probably represent lower OMZ boundary edge effects and suggest a link between body size and tolerance of hypoxia. Macro- and megafaunal organisms collected between 800 and 1100 m were dominated by a succession of different taxa, indicating that the lower part of the OMZ is also a region of rapid faunal change. Species diversity was depressed in all groups in the OMZ core, but this was much more pronounced for macrofauna and megafauna than for foraminiferans. Oxygen levels strongly influenced the taxonomic composition of all faunal groups. Calcareous foraminiferans dominated the seasonally and permanently hypoxic sites (136-300 m); agglutinated foraminiferans were relatively more abundant at deeper stations where oxygen concentrations were >0.13 mL L -1(=5.80 μM). Polychaetes were the main macrofaunal taxon within the OMZ; calcareous macrofauna and megafauna (molluscs and echinoderms) were rare or absent where oxygen levels were lowest. The rarity of larger animals between 300 and 700 m on the Pakistan Margin, compared with the abundant macrofauna in the OMZ core off Oman, is the most notable contrast between the two sides of the Arabian Sea. This difference probably reflects the slightly higher oxygen levels and better food quality on the western side.

Pegfilgrastim and Rituximab in Treating Patients With Untreated, Relapsed, or Refractory Follicular Lymphoma, Small Lymphocytic Lymphoma, or Marginal Zone Lymphoma

ClinicalTrials.gov

2017-09-08

Contiguous Stage II Grade 1 Follicular Lymphoma; Contiguous Stage II Grade 2 Follicular Lymphoma; Contiguous Stage II Grade 3 Follicular Lymphoma; Contiguous Stage II Marginal Zone Lymphoma; Contiguous Stage II Small Lymphocytic Lymphoma; Extranodal Marginal Zone B-cell Lymphoma of Mucosa-associated Lymphoid Tissue; Nodal Marginal Zone B-cell Lymphoma; Noncontiguous Stage II Grade 1 Follicular Lymphoma; Noncontiguous Stage II Grade 2 Follicular Lymphoma; Noncontiguous Stage II Grade 3 Follicular Lymphoma; Noncontiguous Stage II Marginal Zone Lymphoma; Noncontiguous Stage II Small Lymphocytic Lymphoma; Recurrent Grade 1 Follicular Lymphoma; Recurrent Grade 2 Follicular Lymphoma; Recurrent Grade 3 Follicular Lymphoma; Recurrent Marginal Zone Lymphoma; Recurrent Small Lymphocytic Lymphoma; Splenic Marginal Zone Lymphoma; Stage I Grade 1 Follicular Lymphoma; Stage I Grade 2 Follicular Lymphoma; Stage I Grade 3 Follicular Lymphoma; Stage I Marginal Zone Lymphoma; Stage I Small Lymphocytic Lymphoma; Stage III Grade 1 Follicular Lymphoma; Stage III Grade 2 Follicular Lymphoma; Stage III Grade 3 Follicular Lymphoma; Stage III Marginal Zone Lymphoma; Stage III Small Lymphocytic Lymphoma; Stage IV Grade 1 Follicular Lymphoma; Stage IV Grade 2 Follicular Lymphoma; Stage IV Grade 3 Follicular Lymphoma; Stage IV Marginal Zone Lymphoma; Stage IV Small Lymphocytic Lymphoma

Determination of the Nonlethal Margin Inside the Visible 'Ice-Ball' During Percutaneous Cryoablation of Renal Tissue

DOE Office of Scientific and Technical Information (OSTI.GOV)

Georgiades, Christos, E-mail: g_christos@hotmail.com; Rodriguez, Ronald, E-mail: rrodrig@jhmi.edu; Azene, Ezana, E-mail: eazene1@jhmi.edu

2013-06-15

Objective. The study was designed to determine the distance between the visible 'ice-ball' and the lethal temperature isotherm for normal renal tissue during cryoablation. Methods. The Animal Care Committee approved the study. Nine adult swine were used: three to determine the optimum tissue stain and six to test the hypotheses. They were anesthetized and the left renal artery was catheterized under fluoroscopy. Under MR guidance, the kidney was ablated and (at end of a complete ablation) the nonfrozen renal tissue (surrounding the 'ice-ball') was stained via renal artery catheter. Kidneys were explanted and sent for slide preparation and examination. Frommore » each slide, we measured the maximum, minimum, and an in-between distance from the stained to the lethal tissue boundaries (margin). We examined each slide for evidence of 'heat pump' effect. Results. A total of 126 measurements of the margin (visible 'ice-ball'-lethal margin) were made. These measurements were obtained from 29 slides prepared from the 6 test animals. Mean width was 0.75 {+-} 0.44 mm (maximum 1.15 {+-} 0.51 mm). It was found to increase adjacent to large blood vessels. No 'heat pump' effect was noted within the lethal zone. Data are limited to normal swine renal tissue. Conclusions. Considering the effects of the 'heat pump' phenomenon for normal renal tissue, the margin was measured to be 1.15 {+-} 0.51 mm. To approximate the efficacy of the 'gold standard' (partial nephrectomy, {approx}98 %), a minimum margin of 3 mm is recommended (3 Multiplication-Sign SD). Given these assumptions and extrapolating for renal cancer, which reportedly is more cryoresistant with a lethal temperature of -40 Degree-Sign C, the recommended margin is 6 mm.« less

Evaluating the Impact of Changes in Oceanic Dissolved Oxygen on Marine Nitrous Oxide

NASA Astrophysics Data System (ADS)

Suntharalingam, Parvadha; Buitenhuis, Erik; Schmidtko, Sunke; Andrews, Oliver; LeQuere, Corinne

2013-04-01

Emissions of the greenhouse gas nitrous-oxide (N2O) from oceanic oxygen minimum zones (OMZs) in the Equatorial Pacific and Northwest Indian Ocean are believed to provide a significant portion of the global oceanic flux to the atmosphere. Mechanisms of marine N2O production and consumption in these regions display significant sensitivity to ambient oxygen, with high yields at low oxygen levels (O2 < 50 micromol/L), and N2O depletion via denitrification in anoxic zones. These OMZ regions display large gradients in sub-surface N2O, and high rates of N2O turnover that far exceed those observed in the open ocean. Recent studies have suggested that possible expansion of oceanic OMZs in a warming climate, could lead to significant changes in N2O emissions from these zones. In this analysis we employ a global ocean biogeochemistry model (NEMO-PlankTOM), which includes representation of the marine N2O cycle, to explore the impact of changes in dissolved oxygen on the ocean-atmosphere N2O flux. We focus on the period 1960-2000, and evaluate the impact of estimated changes in ocean oxygen from two alternative sources : (a) the observationally-based upper-ocean oxygen distributions and trends of Stramma et al. [2012]; (b) simulated oxygen distributions and temporal variations from a set of CMIP5 Earth System models. We will inter-compare the oceanic N2O estimates derived from these alternative scenarios of ocean de-oxygenation. We will also discuss the implications of our results for the ability to reliably predict changes in N2O emissions under potential expansion of oceanic OMZs, particularly in view of the recently noted discrepancies between observed and modeled trends in oceanic oxygen by Stramma et al. [2012].

Physical Controls on Oxygen Distribution and Denitrification Potential in the North West Arabian Sea

NASA Astrophysics Data System (ADS)

Queste, Bastien Y.; Vic, Clément; Heywood, Karen J.; Piontkovski, Sergey A.

2018-05-01

At suboxic oxygen concentrations, key biogeochemical cycles change and denitrification becomes the dominant remineralization pathway. Earth system models predict oxygen loss across most ocean basins in the next century; oxygen minimum zones near suboxia may become suboxic and therefore denitrifying. Using an ocean glider survey and historical data, we show oxygen loss in the Gulf of Oman (from 6-12 to <2 μmol kg-1) not represented in climatologies. Because of the nonlinearity between denitrification and oxygen concentration, resolutions of current Earth system models are too coarse to accurately estimate denitrification. We develop a novel physical proxy for oxygen from the glider data and use a high-resolution physical model to show eddy stirring of oxygen across the Gulf of Oman. We use the model to investigate spatial and seasonal differences in the ratio of oxic and suboxic water across the Gulf of Oman and waters exported to the wider Arabian Sea.

The jumbo squid, Dosidicus gigas (Ommastrephidae), living in oxygen minimum zones II: Blood-oxygen binding

NASA Astrophysics Data System (ADS)

Seibel, Brad A.

2013-10-01

Dosidicus gigas is a large, metabolically active squid that migrates across a strong oxygen and temperature gradient in the Eastern Pacific. Here we analyze the oxygen-binding properties of the squid's respiratory protein (hemocyanin, Hc) that facilitate such activity. A high Hc-oxygen affinity, strong temperature dependence, and pronounced pH sensitivity (P50=0.009T2.03, pH 7.4; Bohr coefficient=ΔlogP50/ΔpH=-1.55+0.034T) of oxygen binding facilitate night-time foraging in the upper water column, and support suppressed oxygen demand in hypoxic waters at greater depths. Expanding hypoxia may act to alter the species habitable depth range. This analysis supports the contention that ocean acidification could limit oxygen carrying capacity in squids at warmer temperature leading to reduced activity levels or altered distribution.

Spatio-temporal biodiversity of soft bottom macrofaunal assemblages in shallow coastal waters exposed to episodic hypoxic events.

PubMed

Veas, Rodrigo; Hernández-Miranda, Eduardo; Quiñones, Renato A; Carrasco, Franklin D

2012-07-01

The Humboldt Current System (HCS) has one of the three most important oxygen minimum zones (OMZ) of the global ocean. Several studies have looked at the macrofaunal benthic assemblages inhabiting the continental shelf and shallow bays off central-southern Chile associated with low oxygen areas, but little is known about open coast macrofaunal communities within this zone, which are frequently subjected to the low oxygen conditions of Equatorial Subsurface Waters (ESSW). In order to assess local and mesoscale coastal macrofauna dynamics, the sampling area (ca. 40 linear km) was divided into seven local zones (Cobquecura, southern Cobquecura, northern Itata, Itata River mouth, external, southern Itata, and Coliumo). Eight oceanographic cruises were carried out between May 2006 and February 2008 covering 16 coastal sampling sites, between 36°07'S and 36°30'S. The macrofaunal assemblage was dominated by polychaetes, crustaceans, and mollusks. Our results suggest a high degree of temporal faunal stability on the mesoscale in soft bottom communities along the open coast, given the persistence of a faunal assemblage dominated by organisms tolerant of low oxygen conditions. While there is some local variability in community attributes, the main structuring factor for soft bottom communities in the shallow coastal area off central-southern Chile is the seasonal intrusion of low oxygen ESSW. Copyright © 2012 Elsevier Ltd. All rights reserved.

The Colorado front range: anatomy of a Laramide uplift

USGS Publications Warehouse

Kellogg, Karl; Bryant, Bruce; Reed, John C.

2004-01-01

Along a transect across the Front Range from Denver to the Blue River valley near Dillon, the trip explores the geologic framework and Laramide (Late Cretaceous to early Eocene) uplift history of this basement-cored mountain range. Specific items for discussion at various stops are (1) the sedimentary and structural record along the upturned eastern margin of the range, which contains several discontinuous, east-directed reverse faults; (2) the western structural margin of the range, which contains a minimum of 9 km of thrust overhang and is significantly different in structural style from the eastern margin; (3) mid- to late-Tertiary modifications to the western margin of the range from extensional faulting along the northern Rio Grande rift trend; (4) the thermal and uplift history of the range as revealed by apatite fission track analysis; (5) the Proterozoic basement of the range, including the significance of northeast-trending shear zones; and (6) the geologic setting of the Colorado mineral belt, formed during Laramide and mid-Tertiary igneous activity.

Dysoxia in the Gulf of Alaska evinced by benthic foraminiferal assemblages and redox-sensitive trace elements during deglacial and glacial intervals

NASA Astrophysics Data System (ADS)

Sharon, S.; Belanger, C. L.; Du, J.; Mix, A. C.; Asahi, H.

2016-12-01

During the last ice age, millennial-scale episodes of expanded low-oxygen conditions occurred around the margins of the North Pacific, however the drivers of these events are not well understood. Differences in the timing of dysoxic events in the shallow and deep Pacific have been proposed, which imply changes in ocean circulation may play a role. Here we combine faunal and geochemical analyses to investigate the timing and severity of low-oxygen events in the North Pacific at a slope (682 m) and a deeper-water (3680 m) site from a transect cored by IODP Expedition 341 in the Gulf of Alaska. At the slope site, multivariate faunal analyses based on the relative abundances of benthic foraminiferal species reveal a distinct fauna characterized by high abundances of taxa associated with dysoxic to suboxic conditions including Buliminella tenuata, Bolivia pacifica, and Epistominella pacifica. These assemblages occur during the most recent deglacial ( 12,000 kyr) and during MIS 3 from 45,000-55,000 years ago. These fossil assemblages have no faunal analog within the modern Gulf of Alaska, although they are most similar to faunas from the modern oxygen minimum zone (OMZ). Thus, these faunas may represent a more intense OMZ. Sedimentary trace element analyses show enrichment in Re, Mo, and U where these faunas are found, supporting them as low-oxygen indicators. Similarly, a distinct fauna occurs at the deeper site, which has high relative abundances of Nonionella sp., Stainforthia fusiformis, and small-bodied taxa common in suboxic settings with high phytodetritus. Ongoing age-model improvements and increased sampling resolution will allow us to better test whether faunal changes are offset at the two sites and assess the abruptness of the onset of extreme low-oxygen events in the North Pacific.

Behavioral ecology of jumbo squid (Dosidicus gigas) in relation to oxygen minimum zones

NASA Astrophysics Data System (ADS)

Stewart, Julia S.; Field, John C.; Markaida, Unai; Gilly, William F.

2013-10-01

Habitat utilization, behavior and food habits of the jumbo or Humboldt squid, Dosidicus gigas, were compared between an area recently inhabited in the northern California Current System (CCS) and a historically established area of residence in the Gulf of California (GOC). Low dissolved oxygen concentrations at midwater depths define the oxygen minimum zone (OMZ), an important environmental feature in both areas. We analyzed vertical diving behavior and diet of D. gigas and hydrographic properties of the water column to ascertain the extent to which squid utilized the OMZ in the two areas. The upper boundary of the OMZ has been shoaling in recent decades in the CCS, and this phenomenon has been proposed to vertically compress the pelagic environment inhabited by aerobic predators. A shoaling OMZ will also bring mesopelagic communities into a depth range with more illumination during daytime, making these organisms more vulnerable to predation by visual predators (i.e. jumbo squid). Because the OMZ in the GOC is considerably shallower than in the CCS, our study provides insight into the behavioral plasticity of jumbo squid and how they may respond to a shoaling OMZ in the CCS. We propose that shoaling OMZs are likely to be favorable to jumbo squid and could be a key indirect factor behind the recent range expansion of this highly migratory predator.

Diversity and Spatial Distribution of Hydrazine Oxidoreductase (hzo) Gene in the Oxygen Minimum Zone Off Costa Rica

PubMed Central

Kong, Liangliang; Jing, Hongmei; Kataoka, Takafumi; Buchwald, Carolyn; Liu, Hongbin

2013-01-01

Anaerobic ammonia oxidation (anammox) as an important nitrogen loss pathway has been reported in marine oxygen minimum zones (OMZs), but the community composition and spatial distribution of anammox bacteria in the eastern tropical North Pacific (ETNP) OMZ are poorly determined. In this study, anammox bacterial communities in the OMZ off Costa Rica (CRD-OMZ) were analyzed based on both hydrazine oxidoreductase (hzo) genes and their transcripts assigned to cluster 1 and 2. The anammox communities revealed by hzo genes and proteins in CRD-OMZ showed a low diversity. Gene quantification results showed that hzo gene abundances peaked in the upper OMZs, associated with the peaks of nitrite concentration. Nitrite and oxygen concentrations may therefore colimit the distribution of anammox bacteria in this area. Furthermore, transcriptional activity of anammox bacteria was confirmed by obtaining abundant hzo mRNA transcripts through qRT-PCR. A novel hzo cluster 2x clade was identified by the phylogenetic analysis and these novel sequences were abundant and widely distributed in this environment. Our study demonstrated that both cluster 1 and 2 anammox bacteria play an active role in the CRD-OMZ, and the cluster 1 abundance and transcriptional activity were higher than cluster 2 in both free-living and particle-attached fractions at both gene and transcriptional levels. PMID:24205176

A Phase I/II Study of Intratumoral Injection of SD-101

ClinicalTrials.gov

2017-09-04

Extranodal Marginal Zone B-cell Lymphoma of Mucosa-associated Lymphoid Tissue; Nodal Marginal Zone B-cell Lymphoma; Recurrent Grade 1 Follicular Lymphoma; Recurrent Grade 2 Follicular Lymphoma; Recurrent Marginal Zone Lymphoma; Recurrent Small Lymphocytic Lymphoma; Splenic Marginal Zone Lymphoma

Evolution of the Marginal Ice Zone: Adaptive Sampling with Autonomous Gliders

DTIC Science & Technology

2015-09-30

kinetic energy (ε). Gliders also sampled dissolved oxygen, optical backscatter ( chlorophyll and CDOM fluorescence) and multi-spectral downwelling...Fig. 2). In the pack, Pacific Summer Water and a deep chlorophyll maximum form distinct layers at roughly 60 m and 80 m, respectively, which become...Sections across the ice edge just prior to recovery, during freeze-up, reveal elevated chlorophyll fluorescence throughout the mixed layer (Fig. 4

Hypoxia tolerance and antioxidant defense system of juvenile jumbo squids in oxygen minimum zones

NASA Astrophysics Data System (ADS)

Trübenbach, Katja; Teixeira, Tatiana; Diniz, Mário; Rosa, Rui

2013-10-01

Jumbo squid (Dosidicus gigas) is a large oceanic squid endemic off the Eastern Tropical Pacific that undertakes diel vertical migrations into mesopelagic oxygen minimum zones. One of the expected physiological effects of such migration is the generation of reactive oxygen species (ROS) at the surface, promoted by the transition between hypoxia and reoxygenation states. The aim of this study was to investigate the energy expenditure rates and the antioxidant stress strategies of juvenile D. gigas under normoxia and hypoxia, namely by quantifying oxygen consumption rates, antioxidant enzyme activities [including superoxide dismutase (SOD), catalase (CAT) and glutathione-S-transferase (GST)], heat shock protein expression (Hsp70/Hsc70), and lipid peroxidation [malondialdehyde (MDA) levels]. A high significant decrease (68%) in squid's metabolic rates was observed during hypoxia (p<0.05). This process of metabolic suppression was followed by a significant increase in Hsp70/Hsc70 expression (p<0.05), which may be interpreted as a strategy to prevent post-hypoxic oxidative damage during the squid's night upwards migration to the surface ocean. On the other hand, in normoxia, the higher SOD and CAT activities seemed to be a strategy to cope with the reoxygenation process, and may constitute an integrated stress response at shallower depths. GST activity and MDA concentrations did not change significantly from normoxia to hypoxia (p>0.05), with the latter indicating no enhancement of lipid peroxidation (i.e. cellular damage) at the warmer and normoxic surface waters. The understanding of such physiological strategies that are linked to oxygen deprivation and reoxygenation phases may provide valuable information about how this species is quickly responding to the impacts of environmental stressors coupled with global climate change.

Reconnaissance 14C Dating and the Evaluation of Mg/Li as a Temperature Proxy in Bamboo Corals from the California Margin

NASA Astrophysics Data System (ADS)

Freiberger, M. M.; LaVigne, M.; Miller, H.; Hill, T. M.; McNichol, A. P.; Lardie Gaylord, M.

2015-12-01

In the face of anthropogenically induced climate changes, it is becoming increasingly important to develop high-resolution paleoceanographic records that may elucidate how ocean conditions may shift in coming decades. Recently, bamboo corals (gorgonian octocorals) have been proposed as archives of intermediate ocean conditions. This study used 'reconnaissance' radiocarbon analysis to identify the nuclear bomb 14C spike in the proteinaceous nodes of bamboo corals and to quantify radial growth rates and ages of corals spanning the eastern Pacific oxygen minimum zone (OMZ) (790-2055 m). Preliminary data suggest that these corals exhibit a wide range of growth rates (9.4-350 μm/yr) that are non-linear over time and decrease with coral age and depth. Records of Mg/Li were investigated in these corals, given that previous studies have demonstrated positive correlations between Mg/Li and temperature in benthic foraminifera and surface and deep-sea aragonitic corals, with a reduced influence of vital effects over Mg/Ca. Intracoral reproducibility observed for replicate Mg/Li timeseries within each sample (p=0.6±0.2, n=6) and strong correlations between Mg/Ca and Li/Ca (0.9±0.1, n=6) indicate similar environmental or biological drivers of Mg and Li incorporation in bamboo corals. Given the strong positive correlations between Mg/Li and water temperature across a depth transect (r2=0.87, n=6), increasing Mg/Li observed over the growth history of each of the corals more likely reflects declining growth rates resulting in decreased Li incorporation over time rather than cooling of California Margin intermediate waters. Reductions in growth rate over the lifespan of each coral (~100+ years) may be a function of natural coral growth patterns or changes in carbonate chemistry, oxygen, or food supply in a sensitive OMZ coral ecosystem.

Chromium Isotope Anomaly Scaling with Past Warming Episodes

NASA Astrophysics Data System (ADS)

Remmelzwaal, S.; O'Connor, L.; Preston, W.; Parkinson, I. J.; Schmidt, D. N.

2017-12-01

The recent expansion of oxygen minimum zones caused by anthropogenic global warming raises questions about the scale of this expansion with different emission scenarios. Ocean deoxygenation will impact marine ecosystems and fisheries demanding an assessment of the possible extent and intensity of deoxygenation. Here, we used past climate warming events to quantify a potential link between warming and the spread of oxygen minimum zones: including Ocean Anoxic Event (OAE) 1a, OAE 2 in the Cretaceous, the Palaeocene-Eocene Thermal Maximum (PETM), the Eocene Thermal Maximum 2 (ETM2), and Pleistocene glacial-interglacial cycles. We applied the emerging proxy of chromium isotopes in planktic foraminifera to assess redox changes during the PETM, ETM2, and Pleistocene and bulk carbonate for the OAEs. Both δ53Cr and chromium concentrations respond markedly during the PETM indicative of a reduction in dissolved oxygen concentrations caused by changes in ocean ventilation and associated warming [1]. A strong correlation between Δδ53Cr and benthic Δδ18O, a measure of the excursion size in both oxygen and chromium isotopes, suggest temperatures to be one of the main drivers of ocean deoxygenation in the past [1]. Chromium concentrations decrease during ETM2 and OAE1a, and, increase by 4.5 ppm over the Plenus Cold Event during OAE2, which suggests enhanced seafloor ventilation. [1] Remmelzwaal, S.R.C., Dixon, S., Parkinson, I.J., Schmidt, D.N., Monteiro, F.M., Sexton, P., Fehr, M., Peacock, C., Donnadieu, Y., James, R.H., in review. Ocean deoxygenation during the Palaeocene-Eocene Thermal Maximum. EPSL.

Enhanced Sulfate Reduction and Carbon Sequestration in Sediments Underlying the Core of the Arabian Sea Oxygen Minimum Zone

NASA Astrophysics Data System (ADS)

Fernandes, S. Q.; Mazumdar, A.; Peketi, A.; Bhattacharya, S.; Carvalho, M.; Da Silva, R.; Roy, R.; Mapder, T.; Roy, C.; Banik, S. K.; Ghosh, W.

2017-12-01

The oxygen minimum zone (OMZ) of the Arabian Sea in the northern Indian Ocean is one of the three major global sites of open ocean denitrification. The functionally anoxic water column between 150 to 1200 mbsl plays host to unique biogeochemical processes and organism interactions. Little is known, however, about the consequence of the low dissolved oxygen on the underlying sedimentary biogeochemical processes. Here we present, for the first time, a comprehensive investigation of sediment biogeochemistry of the Arabian Sea OMZ by coupling pore fluid analyses with microbial diversity data in eight sediment cores collected across a transect off the west coast of India in the Eastern Arabian Sea. We observed that in sediments underlying the core of the OMZ, high organic carbon sequestration coincides with a high diversity of all bacteria (the majority of which are complex organic matter hydrolyzers) and sulfate reducing bacteria (simple organic compound utilizers). Depth-integrated sulfate reduction rate also intensifies in this territory. These biogeochemical features, together with the detected shallowing of the sulfate-methane interface and buildup of pore-water sulfide, are all reflective of heightened carbon-sulfur cycling in the sediments underlying the OMZ core. Our data suggests that the sediment biogeochemistry of the OMZ is sensitive to minute changes in bottom water dissolved oxygen, and is dictated by the potential abundance and bioavailability of complex to simple carbon compounds which can stimulate a cascade of geomicrobial activities pertaining to the carbon-sulfur cycle. Our findings hold implications in benthic ecology and sediment diagenesis.

Paralarvae of the complex Sthenoteuthis oualaniensis - Dosidicus gigas (Cephalopoda: Ommastrephidae) in the northern limit of the shallow oxygen minimum zone of the Eastern Tropical Pacific Ocean.

NASA Astrophysics Data System (ADS)

Sanchez Velasco, L.; Ruvalcaba-Aroche, E. D.; Beier, E.; Godinez, V. M.; Barton, E. D.; Diaz-Viloria, N.; Pacheco, M.

2016-02-01

The three-dimensional distribution of the paralarvae of the complex Sthenoteuthis oualaniensis - Dosidicus gigas (Cephalopoda: Ommastrephidae) was analyzed in the northern limit of the shallow oxygen minimum zone in the Eastern Tropical Pacific (April, 2012). The hypoxic water ( 1 mL/L) rises from 100 m depth in the entrance of the Gulf of California to 20 m depth off Cabo Corrientes. Most of the paralarvae of this complex, dominated by D. gigas, were concentrated in the Gulf entrance, between the thermocline ( 20 to 50 m depth) and the sea surface, in the warmest (> 19oC) and oxygenated (> 4 mL/L) layer. The highest abundance of paralarvae was detected in an anticyclonic eddy ( 120 km diameter and > 500 m deep), which contained lower salinity water (< 35 g/kg), consistent with formation in the California Current. Lower paralarvae abundance was recorded further south off Cabo Corrientes, where hypoxic layers were elevated as water shoaled near shore. No paralarvae were found in the north of the study area beyond the strong salinity front ( 34.8 - 35.4 g/kg) that bounded the anticyclone. These results showed an affinity of the paralarvae for lower salinity, oxygenated water, illustrated by the influence of the mesoescale anticyclonic eddy and the salinity front in their distribution. Based on this study, it can be hypothesized that the expansion of the depth range of hypoxic water observed in the Eastern Tropical Pacific is vertically restricting the paralarvae habitat and likely causing a northward expansion of its range.

A multiproxy approach to understanding the "enhanced" flux of organic matter through the oxygen deficient waters of the Arabian Sea

NASA Astrophysics Data System (ADS)

Keil, R. G.; Neibauer, J.; Biladeau, C.; van der Elst, K.; Devol, A. H.

2015-10-01

Free-drifting sediment net traps were deployed 14 times at depths between 80 and 500 m for 1-3 days each during the late monsoon/intermonsoon transition in the central Arabian Sea. Two locations (19.5 and 15.5° N) were within the permanently oxygen deficient zone, and a third (11° N) had a shallow and thin oxygen minimum. The secondary nitrite maximum, which serves as a tracer of the oxygen deficient zone (ODZ) zone, thinned from ∼ 250 m thick at stations 19.5 and 15.5° N to ∼ 50 m thick at station 11° N. Overall, organic carbon fluxes ranged from 13.2 g m2 yr-1 at 80 m to a minimum of 1.1 g m2 yr-1 at 500 m. Fluxes at the more oxygenated 11° N station attenuate faster than within the permanent ODZ. Martin curve attenuation coefficients for 19.5 and 15.5° N are 0.59 and 0.63 and for 11° N it is 0.98. At least six potential mechanisms might explain why sinking particles sinking through the ODZ are more effectively transferred to depth; (M1) oxygen effects, (M2) microbial loop efficiencies and chemoautotrophy, (M3) changes in zooplankton dynamics, (M4) additions of ballast that might sorb and protect organic matter from decay, (M5) inputs of refractory organic matter, and (M6) changes in sinking speeds. These mechanisms are intertwined, and were explored using a combination of mineral (XPS) and organic matter characterizations of the sinking material and ship-board incubation experiments. Evidence was found supporting an oxygen effect and/or changes in the efficiency of the microbial loop including the addition of chemoautotrophic carbon to the sinking flux in the upper 500 m. Less evidence was found for the other potential mechanisms. A simple conceptual model consistent with our and other recent data suggests that the upper ODZ microbial community determines the initial flux attenuation, and that deeper in the water column zooplankton and sinking speed become more important. The exact interplay between the various mechanisms remains to be further evaluated.

Root-Zone-Specific Oxygen Tolerance of Azospirillum spp. and Diazotrophic Rods Closely Associated with Kallar Grass.

PubMed

Hurek, T; Reinhold, B; Fendrik, I; Niemann, E G

1987-01-01

The effect of oxygen on N(2)-dependent growth of two Azospirillum strains and two diazotrophic rods closely associated with roots of Kallar grass (Leptochloa fusca) was studied. To enable precise comparison, bacteria were grown in dissolved-oxygen-controlled batch and continuous cultures. Steady states were obtained from about 1 to 30 muM O(2), some of them being carbon limited. All strains needed a minimum amount of oxygen for N(2)-dependent growth. Nitrogen contents between 10 and 13% of cell dry weight were observed. The response of steady-state cultures to increasing O(2) concentrations suggested that carbon limitation shifted to internal nitrogen limitation when N(2) fixation became so low that the bacteria could no longer meet their requirements for fixed nitrogen. For Azospirillum lipoferum Rp5, increase of the dilution rate resulted in decreased N(2) fixation in steady-state cultures with internal nitrogen limitation. Oxygen tolerance was found to be strain specific in A. lipoferum with strain Sp59b as a reference organism. Oxygen tolerance of strains from Kallar grass was found to be root zone specific. A. halopraeferens Au 4 and A. lipoferum Rp5, predominating on the rhizoplane of Kallar grass, and strains H6a2 and BH72, predominating in the endorhizosphere, differed in their oxygen tolerance profiles. Strains H6a2 and BH72 still grew and fixed nitrogen in steady-state cultures at O(2) concentrations exceeding those which absolutely inhibited nitrogen fixation of both Azospirillum strains. It is proposed that root-zone-specific oxygen tolerance reflects an adaptation of the isolates to the microenvironments provided by the host plant.

Implications of SHRIMP and microstructural data on the age and kinematics of shearing in the Asir terrane, southern Arabian Shield, Saudi Arabia

USGS Publications Warehouse

Johnson, P.R.; Kattan, F.H.; Wooden, J.L.

2001-01-01

The Asir terrane consists of north-trending belts of variably metamorphosed volcanic, sedimentary, and plutonic rocks that are cut by numerous shear zones (Fig. 1). Previous workers interpreted the shear zones as sutures, structures that modify earlier sutures, or structures that define the margins of tectonic belts across which there are significant lithologic differences and along which there may have been major transposition (Frisch and Al-Shanti, 1977; Greenwood et al., 1982; Brown et al., 1989). SHRIMP data from zircons (Table 1) and sense-of-shear data recently acquired from selected shear zones in the terrane help to constrain the minimum ages and kinematics of these shearing events and lead to an overall model of terrane assembly that is more complex than previously proposed. 

Bacterial transformations of inorganic nitrogen in the oxygen-deficient waters of the Eastern Tropical South Pacific Ocean

NASA Astrophysics Data System (ADS)

Lipschultz, F.; Wofsy, S. C.; Ward, B. B.; Codispoti, L. A.; Friedrich, G.; Elkins, J. W.

1990-10-01

Rates of transformations of inorganic nitrogen were measured in the low oxygen, subsurface waters (50-450 m) of the Eastern Tropical South Pacific during February 1985, using 15N tracer techniques. Oxygen concentrations over the entire region were in a range (O 2 < 2.5 μM) that allowed both oxidation and reduction of nitrogen to occur. A wide range of rates was observed for the lowest oxygen levels, indicating that observed oxygen concentration was not a primary factor regulating nitrogen metabolism. High values for subsurface metabolic rates correspond with high levels for surface primary production, both apparently associated with mesoscale features observed in satellite imagery and with mesoscale features of the current field. Measured rates of nitrate reduction and estimated rates of denitrification were sufficient to respire nearly all of the surface primary production that might be transported into the oxygen deficient zone. These results imply that the supply of labile organic material, especially from the surface, was more important than oxygen concentration in modulating the rates of nitrogen transformations within the low oxygen water mass of the Eastern Tropical South Pacific. The pattern of nitrite oxidation and nitrite reduction activities in the oxygen minimum zone supports the hypothesis ( ANDERSONet al., 1982, Deep-Sea Research, 29, 1113-1140) that nitrite, produced from nitrate reduction, can be recycled by oxidation at the interface between low and high oxygen waters. Rates for denitrification, estimated from nitrate reduction rates, were in harmony with previous estimates based on electron transport system (ETS) measurements and analysis of the nitrate deficit and water residence times. Assimilation rates of NH 4+ were substantial, providing evidence for heterotrophic bacterial growth in low oxygen waters. Ambient concentrations of ammonium were maintained at low values primarily by assimilation; ammonium oxidation was an important mechanism at the surface boundary of the low oxygen zone.

Kinetic bottlenecks to chemical exchange rates for deep-sea animals - Part 1: Oxygen

NASA Astrophysics Data System (ADS)

Hofmann, A. F.; Peltzer, E. T.; Brewer, P. G.

2012-10-01

Ocean warming will reduce dissolved oxygen concentrations which can pose challenges to marine life. Oxygen limits are traditionally reported simply as a static concentration thresholds with no temperature, pressure or flow rate dependency. Here we treat the oceanic oxygen supply potential for heterotrophic consumption as a dynamic molecular exchange problem analogous to familiar gas exchange processes at the sea surface. A combination of the purely physico-chemical oceanic properties temperature, hydrostatic pressure, and oxygen concentration defines the ability of the ocean to supply oxygen to any given animal. This general oceanic oxygen supply potential is modulated by animal specific properties such as the diffusive boundary layer thickness to define and limit maximal oxygen supply rates. Here we combine all these properties into formal, mechanistic equations defining novel oceanic properties that subsume various relevant classical oceanographic parameters to better visualize, map, comprehend, and predict the impact of ocean deoxygenation on aerobic life. By explicitly including temperature and hydrostatic pressure into our quantities, various ocean regions ranging from the cold deep-sea to warm, coastal seas can be compared. We define purely physico-chemical quantities to describe the oceanic oxygen supply potential, but also quantities that contain organism-specific properties which in a most generalized way describe general concepts and dependencies. We apply these novel quantities to example oceanic profiles around the world and find that temperature and pressure dependencies of diffusion and partial pressure create zones of greatest physical constriction on oxygen supply typically at around 1000 m depth, which coincides with oxygen concentration minimum zones. In these zones, which comprise the bulk of the world ocean, ocean warming and deoxygenation have a clear negative effect for aerobic life. In some shallow and warm waters the enhanced diffusion and higher partial pressure due to higher temperatures might slightly overcompensate for oxygen concentration decreases due to decreases in solubility.

Study of BKM120 & Rituximab in Patients With Relapsed or Refractory Indolent B-Cell Lymphoma

ClinicalTrials.gov

2017-09-12

Extranodal Marginal Zone B-cell Lymphoma of Mucosa-associated Lymphoid Tissue; Nodal Marginal Zone B-cell Lymphoma; Recurrent Grade 1 Follicular Lymphoma; Recurrent Grade 2 Follicular Lymphoma; Recurrent Grade 3 Follicular Lymphoma; Recurrent Mantle Cell Lymphoma; Recurrent Marginal Zone Lymphoma; Splenic Marginal Zone Lymphoma; Waldenström Macroglobulinemia

Uptake of phytodetritus by benthic foraminifera under oxygen depletion at the Indian Margin (Arabian Sea)

NASA Astrophysics Data System (ADS)

Enge, A. J.; Witte, U.; Kucera, M.; Heinz, P.

2013-09-01

Benthic foraminifera in sediments on the Indian margin of the Arabian Sea where the oxygen minimum zone (OMZ) impinges on the continental slope are exposed to particularly severe levels of oxygen depletion. Food supply for the benthic community is high but delivered in distinct pulses during upwelling and water mixing events associated with summer and winter monsoon periods. In order to investigate the response by benthic foraminifera to such pulsed food delivery under oxygen concentrations of less than 0.1 mL L-1 (4.5 μmol L-1), an in situ isotope labeling experiment (13C, 15N) was performed at the western continental slope of India at 540 m water depth (OMZ core region). The assemblage of living foraminifera (>125 μm) in the uppermost centimeter at this depth is characterized by an unexpectedly high population density of 3982 ind. 10 cm-2 and a strong dominance by few calcareous species. For the experiment, we concentrated on the nine most abundant taxa, which constitute 93% of the entire foraminifera population at 0-1 cm sediment depth. Increased concentrations of 13C and 15N in the cytoplasm indicate that all investigated taxa took up the labeled phytodetritus during the 4 day experimental phase. In total, these nine species had assimilated 113.8 mg C m-2 (17.5% of the total added carbon). The uptake of nitrogen by the three most abundant taxa (Bolivina aff. B. dilatata, Cassidulina sp., Bulimina gibba) was 2.7 mg N m-2 (2% of the total added nitrogen) and showed the successful application of 15N as tracer in foraminiferal studies. The short-term response to the offered phytodetritus varied largely among foraminiferal species with Uvigerina schwageri being by far the most important species in short-term processing whereas the most abundant taxa Bolivina aff. B. dilatata and Cassidulina sp. showed comparably low uptake of the offered food. We suggest that the observed species-specific differences are related to individual biomass of species and to specific feeding preferences. The high numbers of living foraminifera and their rapid response to deposited fresh phytodetritus demonstrate the importance of foraminifera in short-term carbon cycling under oxygen-depleted conditions. We propose that foraminifera at the studied site benefit from unique adaptations in their metabolisms to nearly anoxic conditions as well as from the exclusion of macrofauna and the resulting relaxation of competition for food and low predation pressure.

Oxygen, ecology, and the Cambrian radiation of animals

NASA Astrophysics Data System (ADS)

Sperling, Erik A.; Frieder, Christina A.; Raman, Akkur V.; Girguis, Peter R.; Levin, Lisa A.; Knoll, Andrew H.

2013-08-01

The Proterozoic-Cambrian transition records the appearance of essentially all animal body plans (phyla), yet to date no single hypothesis adequately explains both the timing of the event and the evident increase in diversity and disparity. Ecological triggers focused on escalatory predator-prey "arms races" can explain the evolutionary pattern but not its timing, whereas environmental triggers, particularly ocean/atmosphere oxygenation, do the reverse. Using modern oxygen minimum zones as an analog for Proterozoic oceans, we explore the effect of low oxygen levels on the feeding ecology of polychaetes, the dominant macrofaunal animals in deep-sea sediments. Here we show that low oxygen is clearly linked to low proportions of carnivores in a community and low diversity of carnivorous taxa, whereas higher oxygen levels support more complex food webs. The recognition of a physiological control on carnivory therefore links environmental triggers and ecological drivers, providing an integrated explanation for both the pattern and timing of Cambrian animal radiation.

Oxygen Sensitivity of Anammox and Coupled N-Cycle Processes in Oxygen Minimum Zones

PubMed Central

Kalvelage, Tim; Jensen, Marlene M.; Contreras, Sergio; Revsbech, Niels Peter; Lam, Phyllis; Günter, Marcel; LaRoche, Julie; Lavik, Gaute; Kuypers, Marcel M. M.

2011-01-01

Nutrient measurements indicate that 30–50% of the total nitrogen (N) loss in the ocean occurs in oxygen minimum zones (OMZs). This pelagic N-removal takes place within only ∼0.1% of the ocean volume, hence moderate variations in the extent of OMZs due to global warming may have a large impact on the global N-cycle. We examined the effect of oxygen (O2) on anammox, NH3 oxidation and NO3 − reduction in 15N-labeling experiments with varying O2 concentrations (0–25 µmol L−1) in the Namibian and Peruvian OMZs. Our results show that O2 is a major controlling factor for anammox activity in OMZ waters. Based on our O2 assays we estimate the upper limit for anammox to be ∼20 µmol L−1. In contrast, NH3 oxidation to NO2 − and NO3 − reduction to NO2 − as the main NH4 + and NO2 − sources for anammox were only moderately affected by changing O2 concentrations. Intriguingly, aerobic NH3 oxidation was active at non-detectable concentrations of O2, while anaerobic NO3 − reduction was fully active up to at least 25 µmol L−1 O2. Hence, aerobic and anaerobic N-cycle pathways in OMZs can co-occur over a larger range of O2 concentrations than previously assumed. The zone where N-loss can occur is primarily controlled by the O2-sensitivity of anammox itself, and not by any effects of O2 on the tightly coupled pathways of aerobic NH3 oxidation and NO3 − reduction. With anammox bacteria in the marine environment being active at O2 levels ∼20 times higher than those known to inhibit their cultured counterparts, the oceanic volume potentially acting as a N-sink increases tenfold. The predicted expansion of OMZs may enlarge this volume even further. Our study provides the first robust estimates of O2 sensitivities for processes directly and indirectly connected with N-loss. These are essential to assess the effects of ocean de-oxygenation on oceanic N-cycling. PMID:22216239

Aerobic Microbial Respiration in Oceanic Oxygen Minimum Zones

NASA Astrophysics Data System (ADS)

Kalvelage, Tim; Lavik, Gaute; Jensen, Marlene M.; Revsbech, Niels Peter; Schunck, Harald; Loescher, Carolin; Desai, Dhwani K.; LaRoche, Julie; Schmitz-Streit, Ruth; Kuypers, Marcel M. M.

2014-05-01

In the oxygen minimum zones (OMZs) of the tropical oceans, sluggish ventilation combined with strong microbial respiration of sinking organic matter results in the depletion of oxygen (O2). When O2 concentrations drop below ~5 µmol/L, organic matter is generally assumed to be respired with nitrate, ultimately leading to the loss of fixed inorganic nitrogen via anammox and denitrification. However, direct measurements of microbial O2 consumption at low O2 levels are - apart from a single experiment conducted in the OMZ off Peru - so far lacking. At the same time, consistently observed active aerobic ammonium and nitrite oxidation at non-detectable O2 concentrations (<1 µmol/L) in all major OMZs, suggests aerobic microorganisms, likely including heterotrophs, to be well adapted to near-anoxic conditions. Consequently, microaerobic (≤5 µmol/L) remineralization of organic matter, and thus release of ammonium, in low- O2 environments might be significantly underestimated at present. Here we present extensive measurements of microbial O2 consumption in OMZ waters, combined with highly sensitive O2 (STOX) measurements and meta-omic functional gene analyses. Short-term incubation experiments with labelled O2 (18-18O2) carried out in the Namibian and Peruvian OMZ, revealed persistent aerobic microbial activity at depths with non-detectable concentrations of O2 (≤50 nmol/L). In accordance, examination of metagenomes and metatranscriptomes from Chilean and Peruvian OMZ waters identified genes encoding for terminal respiratory oxidases with high O2 affinities as well as their expression by diverse microbial communities. Oxygen consumption was particularly enhanced near the upper OMZ boundaries and could mostly (~80%) be assigned to heterotrophic microbial activity. Compared to previously identified anaerobic microbial processes, microaerobic organic matter respiration was the dominant remineralization pathway and source of ammonium (~90%) in the upper Namibian and Peruvian OMZ. Our results reconcile so-far existing mismatches between ammonium sources and sinks in OMZs, and may help to improve biogeochemical modelling of the effects of future ocean de-oxygenation on aerobic and anaerobic organic matter remineralization in these zones.

Dynamics of oxygen and carbon dioxide in rhizospheres of Lobelia dortmanna - a planar optode study of belowground gas exchange between plants and sediment.

PubMed

Lenzewski, Nikola; Mueller, Peter; Meier, Robert Johannes; Liebsch, Gregor; Jensen, Kai; Koop-Jakobsen, Ketil

2018-04-01

Root-mediated CO 2 uptake, O 2 release and their effects on O 2 and CO 2 dynamics in the rhizosphere of Lobelia dortmanna were investigated. Novel planar optode technology, imaging CO 2 and O 2 distribution around single roots, provided insights into the spatiotemporal patterns of gas exchange between roots, sediment and microbial community. In light, O 2 release and CO 2 uptake were pronounced, resulting in a distinct oxygenated zone (radius: c. 3 mm) and a CO 2 -depleted zone (radius: c. 2 mm) around roots. Simultaneously, however, microbial CO 2 production was stimulated within a larger zone around the roots (radius: c. 10 mm). This gave rise to a distinct pattern with a CO 2 minimum at the root surface and a CO 2 maximum c. 2 mm away from the root. In darkness, CO 2 uptake ceased, and the CO 2 -depleted zone disappeared within 2 h. By contrast, the oxygenated root zone remained even after 8 h, but diminished markedly over time. A tight coupling between photosynthetic processes and the spatiotemporal dynamics of O 2 and CO 2 in the rhizosphere of Lobelia was demonstrated, and we suggest that O 2 -induced stimulation of the microbial community in the sediment increases the supply of inorganic carbon for photosynthesis by building up a CO 2 reservoir in the rhizosphere. © 2018 The Authors. New Phytologist © 2018 New Phytologist Trust.

Rituxan/Bendamustine/PCI-32765 in Relapsed DLBCL, MCL, or Indolent Non-Hodgkin's Lymphoma

ClinicalTrials.gov

2017-11-07

Extranodal Marginal Zone B-cell Lymphoma of Mucosa-associated Lymphoid Tissue; Nodal Marginal Zone B-cell Lymphoma; Recurrent Adult Diffuse Large Cell Lymphoma; Recurrent Grade 1 Follicular Lymphoma; Recurrent Grade 2 Follicular Lymphoma; Recurrent Grade 3 Follicular Lymphoma; Recurrent Mantle Cell Lymphoma; Recurrent Marginal Zone Lymphoma; Splenic Marginal Zone Lymphoma; Waldenstrom Macroglobulinemia

Oxidative stress in deep scattering layers: Heat shock response and antioxidant enzymes activities of myctophid fishes thriving in oxygen minimum zones

NASA Astrophysics Data System (ADS)

Lopes, Ana Rita; Trübenbach, Katja; Teixeira, Tatiana; Lopes, Vanessa M.; Pires, Vanessa; Baptista, Miguel; Repolho, Tiago; Calado, Ricardo; Diniz, Mário; Rosa, Rui

2013-12-01

Diel vertical migrators, such as myctophid fishes, are known to encounter oxygen minimum zones (OMZ) during daytime in the Eastern Pacific Ocean and, therefore, have to cope with temperature and oxidative stress that arise while ascending to warmer, normoxic surface waters at night-time. The aim of this study was to investigate the antioxidant defense strategies and heat shock response (HSR) in two myctophid species, namely Triphoturus mexicanus and Benthosema panamense, at shallow and warm surface waters (21 kPa, 20-25 °C) and at hypoxic, cold (≤1 kPa, 10 °C) mesopelagic depths. More specifically, we quantified (i) heat shock protein concentrations (HSP70/HSC70) (ii) antioxidant enzyme activities [including superoxide dismutase (SOD), catalase (CAT) and glutathione-S-transferase (GST)], and (iii) lipid peroxidation [malondialdehyde (MDA) levels]. HSP70/HSC70 levels increased in both myctophid species at warmer, well-oxygenated surface waters probably to prevent cellular damage (oxidative stress) due to increased oxygen demand under elevated temperatures and reactive oxygen species (ROS) formation. On the other hand, CAT and GST activities were augmented under hypoxic conditions, probably as preparatory response to a burst of oxyradicals during the reoxygenation phase (while ascending). SOD activity decreased under hypoxia in B. panamense, but was kept unchanged in T. mexicanus. MDA levels in B. panamense did not change between the surface and deep-sea conditions, whereas T. mexicanus showed elevated MDA and HSP70/HSC70 concentrations at warmer surface waters. This indicated that T. mexicanus seems to be not so well tuned to temperature and oxidative stress associated to diel vertical migrations. The understanding of such physiological strategies that are linked to oxygen deprivation and reoxygenation phases may provide valuable information about how different species might respond to the impacts of environmental stressors (e.g. expanding mesopelagic hypoxia) coupled with global climate change.

Changes in Ocean Heat, Carbon Content, and Ventilation: A Review of the First Decade of GO-SHIP Global Repeat Hydrography.

PubMed

Talley, L D; Feely, R A; Sloyan, B M; Wanninkhof, R; Baringer, M O; Bullister, J L; Carlson, C A; Doney, S C; Fine, R A; Firing, E; Gruber, N; Hansell, D A; Ishii, M; Johnson, G C; Katsumata, K; Key, R M; Kramp, M; Langdon, C; Macdonald, A M; Mathis, J T; McDonagh, E L; Mecking, S; Millero, F J; Mordy, C W; Nakano, T; Sabine, C L; Smethie, W M; Swift, J H; Tanhua, T; Thurnherr, A M; Warner, M J; Zhang, J-Z

2016-01-01

Global ship-based programs, with highly accurate, full water column physical and biogeochemical observations repeated decadally since the 1970s, provide a crucial resource for documenting ocean change. The ocean, a central component of Earth's climate system, is taking up most of Earth's excess anthropogenic heat, with about 19% of this excess in the abyssal ocean beneath 2,000 m, dominated by Southern Ocean warming. The ocean also has taken up about 27% of anthropogenic carbon, resulting in acidification of the upper ocean. Increased stratification has resulted in a decline in oxygen and increase in nutrients in the Northern Hemisphere thermocline and an expansion of tropical oxygen minimum zones. Southern Hemisphere thermocline oxygen increased in the 2000s owing to stronger wind forcing and ventilation. The most recent decade of global hydrography has mapped dissolved organic carbon, a large, bioactive reservoir, for the first time and quantified its contribution to export production (∼20%) and deep-ocean oxygen utilization. Ship-based measurements also show that vertical diffusivity increases from a minimum in the thermocline to a maximum within the bottom 1,500 m, shifting our physical paradigm of the ocean's overturning circulation.

Arsenic Trioxide in Treating Patients With Relapsed or Refractory Lymphoma or Leukemia

ClinicalTrials.gov

2013-01-31

Extranodal Marginal Zone B-cell Lymphoma of Mucosa-associated Lymphoid Tissue; Nodal Marginal Zone B-cell Lymphoma; Prolymphocytic Leukemia; Recurrent Adult Diffuse Small Cleaved Cell Lymphoma; Recurrent Grade 1 Follicular Lymphoma; Recurrent Grade 2 Follicular Lymphoma; Recurrent Marginal Zone Lymphoma; Recurrent Small Lymphocytic Lymphoma; Refractory Chronic Lymphocytic Leukemia; Splenic Marginal Zone Lymphoma; Waldenström Macroglobulinemia

Radiolabeled Monoclonal Antibody Plus Rituximab With and Without Filgrastim and Interleukin-11 in Treating Patients With Relapsed or Refractory Non-Hodgkin's Lymphoma

ClinicalTrials.gov

2015-11-04

Extranodal Marginal Zone B-cell Lymphoma of Mucosa-associated Lymphoid Tissue; Nodal Marginal Zone B-cell Lymphoma; Recurrent Grade 1 Follicular Lymphoma; Recurrent Grade 2 Follicular Lymphoma; Recurrent Grade 3 Follicular Lymphoma; Recurrent Marginal Zone Lymphoma; Recurrent Small Lymphocytic Lymphoma; Splenic Marginal Zone Lymphoma; Waldenström Macroglobulinemia

Accumulation of Fe oxyhydroxides in the Peruvian oxygen deficient zone implies non-oxygen dependent Fe oxidation

DOE PAGES

Heller, Maija I.; Lam, Phoebe J.; Moffett, James W.; ...

2017-05-19

Oxygen minimum zones (OMZs) have been proposed to be an important source of dissolved iron (Fe) into the interior ocean. However, previous studies in OMZs have shown a sharp decrease in total dissolved Fe (dFe) and/or dissolved Fe(II) (dFe(II)) concentrations at the shelf-break, despite constant temperature, salinity and continued lack of oxygen across the shelf-break. The loss of both total dFe and dFe(II) suggests a conversion of the dFe to particulate form, but studies that have coupled the reduction-oxidation (redox) speciation of both dissolved and particulate phases have not previously been done. Here in this work, we have measured themore » redox speciation and concentrations of both dissolved and particulate forms of Fe in samples collected during the U.S. GEOTRACES Eastern tropical Pacific Zonal Transect (EPZT) cruise in 2013 (GP16). This complete data set allows us to assess possible mechanisms for loss of dFe. We observed an offshore loss of dFe(II) within the oxygen deficient zone (ODZ), where dissolved oxygen is undetectable, accompanied by an increase in total particulate Fe (pFe). Total pFe concentrations were highest in the upper ODZ. X-ray absorption spectroscopy revealed that the pFe maximum was primarily in the Fe(III) form as Fe(III) oxyhydroxides. The remarkable similarity in the distributions of total particulate iron and nitrite suggests a role for nitrite in the oxidation of dFe(II) to pFe(III). Lastly, we present a conceptual model for the rapid redox cycling of Fe that occurs in ODZs, despite the absence of oxygen.« less

Accumulation of Fe oxyhydroxides in the Peruvian oxygen deficient zone implies non-oxygen dependent Fe oxidation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Heller, Maija I.; Lam, Phoebe J.; Moffett, James W.

Oxygen minimum zones (OMZs) have been proposed to be an important source of dissolved iron (Fe) into the interior ocean. However, previous studies in OMZs have shown a sharp decrease in total dissolved Fe (dFe) and/or dissolved Fe(II) (dFe(II)) concentrations at the shelf-break, despite constant temperature, salinity and continued lack of oxygen across the shelf-break. The loss of both total dFe and dFe(II) suggests a conversion of the dFe to particulate form, but studies that have coupled the reduction-oxidation (redox) speciation of both dissolved and particulate phases have not previously been done. Here in this work, we have measured themore » redox speciation and concentrations of both dissolved and particulate forms of Fe in samples collected during the U.S. GEOTRACES Eastern tropical Pacific Zonal Transect (EPZT) cruise in 2013 (GP16). This complete data set allows us to assess possible mechanisms for loss of dFe. We observed an offshore loss of dFe(II) within the oxygen deficient zone (ODZ), where dissolved oxygen is undetectable, accompanied by an increase in total particulate Fe (pFe). Total pFe concentrations were highest in the upper ODZ. X-ray absorption spectroscopy revealed that the pFe maximum was primarily in the Fe(III) form as Fe(III) oxyhydroxides. The remarkable similarity in the distributions of total particulate iron and nitrite suggests a role for nitrite in the oxidation of dFe(II) to pFe(III). Lastly, we present a conceptual model for the rapid redox cycling of Fe that occurs in ODZs, despite the absence of oxygen.« less

Accumulation of Fe oxyhydroxides in the Peruvian oxygen deficient zone implies non-oxygen dependent Fe oxidation

NASA Astrophysics Data System (ADS)

Heller, Maija I.; Lam, Phoebe J.; Moffett, James W.; Till, Claire P.; Lee, Jong-Mi; Toner, Brandy M.; Marcus, Matthew A.

2017-08-01

Oxygen minimum zones (OMZs) have been proposed to be an important source of dissolved iron (Fe) into the interior ocean. However, previous studies in OMZs have shown a sharp decrease in total dissolved Fe (dFe) and/or dissolved Fe(II) (dFe(II)) concentrations at the shelf-break, despite constant temperature, salinity and continued lack of oxygen across the shelf-break. The loss of both total dFe and dFe(II) suggests a conversion of the dFe to particulate form, but studies that have coupled the reduction-oxidation (redox) speciation of both dissolved and particulate phases have not previously been done. Here we have measured the redox speciation and concentrations of both dissolved and particulate forms of Fe in samples collected during the U.S. GEOTRACES Eastern tropical Pacific Zonal Transect (EPZT) cruise in 2013 (GP16). This complete data set allows us to assess possible mechanisms for loss of dFe. We observed an offshore loss of dFe(II) within the oxygen deficient zone (ODZ), where dissolved oxygen is undetectable, accompanied by an increase in total particulate Fe (pFe). Total pFe concentrations were highest in the upper ODZ. X-ray absorption spectroscopy revealed that the pFe maximum was primarily in the Fe(III) form as Fe(III) oxyhydroxides. The remarkable similarity in the distributions of total particulate iron and nitrite suggests a role for nitrite in the oxidation of dFe(II) to pFe(III). We present a conceptual model for the rapid redox cycling of Fe that occurs in ODZs, despite the absence of oxygen.

Sca-1(+) mesenchymal stromal cells inhibit splenic marginal zone B lymphocytes commitment through Caspase-3.

PubMed

Chen, Yaozhen; Yang, Jialei; Zhang, Hui-Jie; Fan, Hong; An, Ning; Xin, Jiajia; Li, Na; Xu, Jinmei; Yin, Wen; Wu, Zhongliang; Hu, Xingbin

2016-05-01

Mesenchymal stromal cells (MSCs) have been characterized as an important component of hematopoietic niche, which are capable of modulating the immune system through interaction with a wide range of immune cells. Marginal zone B cells, one main type of mature B lymphocytes, play a central role in eliciting antibody response against pathogens. However, how MSCs and its subpopulations regulate marginal zone B cells commitment is unknown yet. In this study, we assessed the contribution of Sca-1(+) MSCs on marginal zone B cells commitment. Our results showed that Sca-1(+) MSCs inhibit the commitment of marginal zone B lymphocytes. The inhibition was exerted through lowered Caspase-3 expression. Furthermore, we found marginal zone B lymphocytes in spleen of Caspase-3 knockout mice decreased and Caspase-3 knockout Sca-1(+) MSCs accounted for the MZB lymphocytes decrease. In conclusion, our investigation provided clues about Sca-1(+) MSCs regulation on the commitment of marginal zone B cells through Caspase-3 gene. © 2016 International Federation for Cell Biology.

Metaproteomics reveals differential modes of metabolic coupling among ubiquitous oxygen minimum zone microbes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hawley, Alyse K.; Brewer, Heather M.; Norbeck, Angela D.

2014-08-05

Oxygen minimum zones (OMZs) are intrinsic water column features arising from respiratory oxygen demand during organic matter degradation in stratified marine waters. Currently OMZs are expanding due to global climate change. This expansion alters marine ecosystem function and the productivity of fisheries due to habitat compression and changes in biogeochemical cycling leading to fixed nitrogen loss and greenhouse gas production. Here we use metaproteomics to chart spatial and temporal patterns of gene expression along defined redox gradients in a seasonally anoxic fjord, Saanich Inlet to better understand microbial community responses to OMZ expansion. The expression of metabolic pathway components formore » nitrification, anaerobic ammonium oxidation (anammox), denitrification and inorganic carbon fixation predominantly co-varied with abundance and distribution patterns of Thaumarchaeota, Nitrospira, Planctomycetes and SUP05/ARCTIC96BD-19 Gammaproteobacteria. Within these groups, pathways mediating inorganic carbon fixation and nitrogen and sulfur transformations were differentially expressed across the redoxcline. Nitrification and inorganic carbon fixation pathways affiliated with Thaumarchaeota dominated dysoxic waters and denitrification, sulfur-oxidation and inorganic carbon fixation pathways affiliated with SUP05 dominated suboxic and anoxic waters. Nitrite-oxidation and anammox pathways affiliated with Nitrospina and Planctomycetes respectively, also exhibited redox partitioning between dysoxic and suboxic waters. The differential expression of these pathways under changing water column redox conditions has quantitative implications for coupled biogeochemical cycling linking different modes of inorganic carbon fixation with distributed nitrogen and sulfur-based energy metabolism extensible to coastal and open ocean OMZs.« less

Persistent millennial-scale link between Greenland climate and northern Pacific Oxygen Minimum Zone under interglacial conditions

NASA Astrophysics Data System (ADS)

Cartapanis, O.; Tachikawa, K.; Romero, O. E.; Bard, E.

2014-02-01

The intensity and/or extent of the northeastern Pacific Oxygen Minimum Zone (OMZ) varied in-phase with the Northern Hemisphere high latitude climate on millennial timescales during the last glacial period, indicating the occurrence of atmospheric and oceanic connections under glacial conditions. While millennial variability was reported for both the Greenland and the northern Atlantic Ocean during the last interglacial period, the climatic connections with the northeastern Pacific OMZ has not yet been observed under warm interglacial conditions. Here we present a new geochemical dataset, spanning the past 120 ka, for major components (terrigenous fraction, marine organic matter, biogenic opal, and carbonates) generated by X-ray fluorescence scanning alongside with biological productivity and redox sensitive trace element content (Mo, Ni, Cd) of sediment core MD02-2508 at 23° N, retrieved from the northern limit of the modern OMZ. Based on elemental ratios Si / Ti (proxy for opal), Cd / Al and Ni / Al, we suggest that biological productivity was high during the last interglacial (MIS5). Highly resolved opal reconstruction presents millennial variability corresponding to all the Dansgaard-Oeschger interstadial events over the last interglacial, while the Mo / Al ratio indicates reduced oxygenation during these events. Extremely high opal content during warm interstadials suggests high diatom productivity. Despite the different climatic and oceanic background between glacial and interglacial periods, rapid variability in the northeastern Pacific OMZ seems to be tightly related to Northern Hemisphere high latitude climate via atmospheric and possibly oceanic processes.

Blastic marginal zone lymphoma: a clinical and pathological study of 8 cases and review of the literature.

PubMed

Magro, Cynthia M; Yang, Amy; Fraga, Garth

2013-05-01

Blastic transformation (BT) of marginal zone lymphoma or mucosa-associated lymphoid tissue lymphoma has been mainly reported in the spleen and stomach. Primary cutaneous marginal zone lymphoma that undergoes BT is rare and not well documented. We describe 8 patients with blastic primary cutaneous marginal zone lymphoma and compare the clinical, pathologic, and molecular findings of these patients with 10 cases previously reported in the literature. The cases of blastic marginal zone lymphoma could be categorized into cases of de novo blastic marginal zone lymphoma and large-cell transformation arising in a background of a history of biopsy proven marginal zone lymphoma. The cases of de novo blastic marginal zone lymphoma occurred in elderly patients without any medical history. In each of the cases, the lesions were radiated, not treated, or treated with complete excision without any death due to lymphoma nor was there any evidence of extracutaneous dissemination. Large-cell transformation arising in background of marginal zone lymphoma typically occurred in patients who were younger; 2 of the 4 cases were immunocompromised. The clinical course in each of the cases was aggressive with 3 of the 4 patients succumbing to disseminated disease while 1 patient developed extracutaneous nodal disease. Phenotypically, there was an expression of CD5 in a total of 3 of the 8 cases and CD23 in 3 of the 8 cases. Commonality of B-cell clones was demonstrated in 2 cases where biopsies were available of both the less aggressive appearing marginal zone lymphoma and the transformed biopsies. Cytogenetic abnormalities associated with BT included a deletion of chromosome 7q in all cases tested. Large-cell transformation arising in a patient with a history of marginal zone lymphoma portends a worse prognosis, including death from disseminated disease, whereas a de novo presentation of blastic marginal zone lymphoma may define a clinical course similar to other forms of low-grade cutaneous B-cell lymphoma. The expression of CD5 and CD23 may define a phenotypic profile associated with BT. It is possible that marginal zone lymphomas associated with CD5 and CD23 positivity should be followed more closely and/or treated with radiation and/or complete excision.

Near N-S paleo-extension in the western Deccan region, India: Does it link strike-slip tectonics with India-Seychelles rifting?

NASA Astrophysics Data System (ADS)

Misra, Achyuta Ayan; Bhattacharya, Gourab; Mukherjee, Soumyajit; Bose, Narayan

2014-09-01

This is the first detailed report and analyses of deformation from the W part of the Deccan large igneous province (DLIP), Maharashtra, India. This deformation, related to the India-Seychelles rifting during Late Cretaceous-Early Paleocene, was studied, and the paleostress tensors were deduced. Near N-S trending shear zones, lineaments, and faults were already reported without significant detail. An E-W extension was envisaged by the previous workers to explain the India-Seychelles rift at ~64 Ma. The direction of extension, however, does not match with their N-S brittle shear zones and also those faults (sub-vertical, ~NE-SW/~NW-SE, and few ~N-S) we report and emphasize in this work. Slickenside-bearing fault planes, brittle shear zones, and extension fractures in meso-scale enabled us to estimate the paleostress tensors (directions and relative magnitudes). The field study was complemented by remote sensing lineament analyses to map dykes and shear zones. Dykes emplaced along pre-existing ~N-S to ~NE-SW/~NW-SE shears/fractures. This information was used to derive regional paleostress trends. A ~NW-SE/NE-SW minimum compressive stress in the oldest Kalsubai Subgroup and a ~N-S direction for the younger Lonavala, Wai, and Salsette Subgroups were deciphered. Thus, a ~NW/NE to ~N-S extension is put forward that refutes the popular view of E-W India-Seychelles extension. Paleostress analyses indicate that this is an oblique rifted margin. Field criteria suggest only ~NE-SW and ~NW-SE, with some ~N-S strike-slip faults/brittle shear zones. We refer this deformation zone as the "Western Deccan Strike-slip Zone" (WDSZ). The observed deformation was matched with offshore tectonics deciphered mainly from faults interpreted on seismic profiles and from magnetic seafloor spreading anomalies. These geophysical findings too indicate oblique rifting in this part of the W Indian passive margin. We argue that the Seychelles microcontinent separated from India only after much of the DLIP erupted. Further studies of magma-rich passive margins with respect to timing and architecture of deformation and emplacement of volcanics are required.

Abrupt changes of intermediate-water oxygen in the northwestern Pacific during the last 27 kyr

NASA Astrophysics Data System (ADS)

Ishizaki, Yui; Ohkushi, Ken'ichi; Ito, Takashi; Kawahata, Hodaka

2009-04-01

An oxygen minimum zone (OMZ) currently exists at intermediate water depths on the northern Japanese margin in the northwestern Pacific. The OMZ results largely from a combination of high surface-water productivity and poor ventilation of intermediate waters. We investigated the late Quaternary history (last 27 kyr) of the intensity of this OMZ using changes in benthic foraminiferal carbon isotopes and assemblages in a sediment core taken on the continental slope off Shimokita Peninsula, northern Japan, at a water depth of 975 m. The core was located well within the region of the present-day OMZ and high surface-water productivity. The benthic foraminiferal δ13C values, which indicate millennial-scale fluctuations of nutrient contents at the sediment-water interface, were 0.48‰ lower during the last glacial maximum (LGM) than during the late Holocene. These results do not indicate the formation of glacial intermediate waters of subarctic Pacific origin, but rather the large contribution of high-nutrient water masses such as the Antarctic Intermediate Water, implying that the regional circulation pattern during the LGM was similar to that of modern times. Benthic foraminiferal assemblages underwent major changes in response to changes in dissolved oxygen concentrations in ocean floor sediments. The lowest oxygen and highest nutrient conditions, marked by dysoxic taxa and negative values of benthic foraminiferal δ13C, occurred during the Bølling/Allerød (B/A) and Pre-Boreal warming events. Dysoxic conditions in this region during these intervals were possibly caused by high surface-water productivity at times of reduced intermediate-water ventilation in the northwestern Pacific. The benthic assemblages show dysoxic events on approx. 100- to 200-year cycles during the B/A, reflecting centennial-scale productivity changes related to freshwater cycles and surface-water circulation in the North Pacific.

Controlled environment crop production - Hydroponic vs. lunar regolith

NASA Technical Reports Server (NTRS)

Bugbee, Bruce G.; Salisbury, Frank B.

1989-01-01

The potential of controlled environment crop production in a lunar colony is discussed. Findings on the effects of optimal root-zone and aerial environments derived as part of the NASA CELSS project at Utah State are presented. The concept of growing wheat in optimal environment is discussed. It is suggested that genetic engineering might produce the ideal wheat cultivar for CELSS (about 100 mm in height with fewer leaves). The Utah State University hydroponic system is outlined and diagrams of the system and plant container construction are provided. Ratio of plant mass to solution mass, minimum root-zone volume, maintenance, and pH control are discussed. A comparison of liquid hydrophonic systems and lunar regoliths as substrates for plant growth is provided. The physiological processes that are affected by the root-zone environment are discussed including carbon partitioning, nutrient availability, nutrient absorption zones, root-zone oxygen, plant water potential, root-produced hormones, and rhizosphere pH control.

A study of the mutational landscape of pediatric-type follicular lymphoma and pediatric nodal marginal zone lymphoma.

PubMed

Ozawa, Michael G; Bhaduri, Aparna; Chisholm, Karen M; Baker, Steven A; Ma, Lisa; Zehnder, James L; Luna-Fineman, Sandra; Link, Michael P; Merker, Jason D; Arber, Daniel A; Ohgami, Robert S

2016-10-01

Pediatric-type follicular lymphoma and pediatric marginal zone lymphoma are two of the rarest B-cell lymphomas. These lymphomas occur predominantly in the pediatric population and show features distinct from their more common counterparts in adults: adult-type follicular lymphoma and adult-type nodal marginal zone lymphoma. Here we report a detailed whole-exome deep sequencing analysis of a cohort of pediatric-type follicular lymphomas and pediatric marginal zone lymphomas. This analysis revealed a recurrent somatic variant encoding p.Lys66Arg in the transcription factor interferon regulatory factor 8 (IRF8) in 3 of 6 cases (50%) of pediatric-type follicular lymphoma. This specific point mutation was not detected in pediatric marginal zone lymphoma or in adult-type follicular lymphoma. Additional somatic point mutations in pediatric-type follicular lymphoma were observed in genes involved in transcription, intracellular signaling, and cell proliferation. In pediatric marginal zone lymphoma, no recurrent mutation was identified; however, somatic point mutations were observed in genes involved in cellular adhesion, cytokine regulatory elements, and cellular proliferation. A somatic variant in AMOTL1, a recurrently mutated gene in splenic marginal zone lymphoma, was also identified in a case of pediatric marginal zone lymphoma. The overall non-synonymous mutational burden was low in both pediatric-type follicular lymphoma and pediatric marginal zone lymphoma (4.6 mutations per exome). Altogether, these findings support a distinctive genetic basis for pediatric-type follicular lymphoma and pediatric marginal zone lymphoma when compared with adult subtypes and to one another. Moreover, identification of a recurrent point mutation in IRF8 provides insight into a potential driver mutation in the pathogenesis of pediatric-type follicular lymphoma with implications for novel diagnostic or therapeutic strategies.

A study of the mutational landscape of pediatric-type follicular lymphoma and pediatric nodal marginal zone lymphoma

PubMed Central

Ozawa, Michael G; Bhaduri, Aparna; Chisholm, Karen M; Baker, Steven A; Ma, Lisa; Zehnder, James L; Luna-Fineman, Sandra; Link, Michael P; Merker, Jason D; Arber, Daniel A; Ohgami, Robert S

2016-01-01

Pediatric-type follicular lymphoma and pediatric marginal zone lymphoma are two of the rarest B-cell lymphomas. These lymphomas occur predominantly in the pediatric population and show features distinct from their more common counterparts in adults: adult-type follicular lymphoma and adult-type nodal marginal zone lymphoma. Here we report a detailed whole-exome deep sequencing analysis of a cohort of pediatric-type follicular lymphomas and pediatric marginal zone lymphomas. This analysis revealed a recurrent somatic variant encoding p.Lys66Arg in the transcription factor interferon regulatory factor 8 (IRF8) in 3 of 6 cases (50%) of pediatric-type follicular lymphoma. This specific point mutation was not detected in pediatric marginal zone lymphoma or in adult-type follicular lymphoma. Additional somatic point mutations in pediatric-type follicular lymphoma were observed in genes involved in transcription, intracellular signaling, and cell proliferation. In pediatric marginal zone lymphoma, no recurrent mutation was identified; however, somatic point mutations were observed in genes involved in cellular adhesion, cytokine regulatory elements, and cellular proliferation. A somatic variant in AMOTL1, a recurrently mutated gene in splenic marginal zone lymphoma, was also identified in a case of pediatric marginal zone lymphoma. The overall non-synonymous mutational burden was low in both pediatric-type follicular lymphoma and pediatric marginal zone lymphoma (4.6 mutations per exome). Altogether, these findings support a distinctive genetic basis for pediatric-type follicular lymphoma and pediatric marginal zone lymphoma when compared with adult subtypes and to one another. Moreover, identification of a recurrent point mutation in IRF8 provides insight into a potential driver mutation in the pathogenesis of pediatric-type follicular lymphoma with implications for novel diagnostic or therapeutic strategies. PMID:27338637

Late summer metalimnetic oxygen minimum zone in the northern Baltic Sea

NASA Astrophysics Data System (ADS)

Raateoja, M.; Kuosa, H.; Flinkman, J.; Pääkkönen, J.-P.; Perttilä, M.

2010-02-01

The frequently observed, but commonly ignored hydrographic characteristic of the Baltic Sea, the oxygen minimum zone (OMiZ) above and within the summertime thermocline, was studied during the 6-yr monitoring programme encompassing the Gulfs of Bothnia and Finland in the northern Baltic Sea. A temperature-anomaly-driven density gradient was found to be a prerequisite for the existence of the OMiZ. We determined the magnitude of the apparently utilized O 2 in the OMiZ by combining graphical analysis and empirical modelling. A sound criterion for distinguishing the cases in which the OMiZ had a biological origin, and not only a hydrodynamic one, was the accompanying ammonium maximum zone (AMaZ). Of a total of 46 stations visited, a density gradient was found at every station, an accompanying OMiZ at 37 stations, and an accompanying AMaZ at 20 stations. This suggests that biological activity is an essential factor in forming the OMiZ. We investigated to what extent the OMiZ was a manifestation of microbial decomposition of autochthonous organic matter, as zooplankton respiration was also a factor. As a study average, ~ 80% of the apparently utilized O 2 was consumed by the microbial decomposition process and ~ 20% of it by mesozooplankton respiration. According to the O 2 quota consumed in the process, the microbial community in the OMiZ of the Gulf of Finland decomposed, on average, 14% of all the organic matter settling from the euphotic zone in the time frame of mid-June to early August. A pronounced allochthonous organic carbon pool in the Gulf of Bothnia hinders a prompt estimation of a corresponding share for that basin.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Walsh, David A.; Zaikova, Elena; Howes, Charles L.

Oxygen minimum zones (OMZs), also known as oceanic"dead zones", are widespread oceanographic features currently expanding due to global warming and coastal eutrophication. Although inhospitable to metazoan life, OMZs support a thriving but cryptic microbiota whose combined metabolic activity is intimately connected to nutrient and trace gas cycling within the global ocean. Here we report time-resolved metagenomic analyses of a ubiquitous and abundant but uncultivated OMZ microbe (SUP05) closely related to chemoautotrophic gill symbionts of deep-sea clams and mussels. The SUP05 metagenome harbors a versatile repertoire of genes mediating autotrophic carbon assimilation, sulfur-oxidation and nitrate respiration responsive to a wide rangemore » of water column redox states. Thus, SUP05 plays integral roles in shaping nutrient and energy flow within oxygen-deficient oceanic waters via carbon sequestration, sulfide detoxification and biological nitrogen loss with important implications for marine productivity and atmospheric greenhouse control.« less

Ammonium and nitrite oxidation at nanomolar oxygen concentrations in oxygen minimum zone waters

PubMed Central

Bristow, Laura A.; Dalsgaard, Tage; Tiano, Laura; Mills, Daniel B.; Bertagnolli, Anthony D.; Wright, Jody J.; Hallam, Steven J.; Ulloa, Osvaldo; Canfield, Donald E.; Revsbech, Niels Peter; Thamdrup, Bo

2016-01-01

A major percentage of fixed nitrogen (N) loss in the oceans occurs within nitrite-rich oxygen minimum zones (OMZs) via denitrification and anammox. It remains unclear to what extent ammonium and nitrite oxidation co-occur, either supplying or competing for substrates involved in nitrogen loss in the OMZ core. Assessment of the oxygen (O2) sensitivity of these processes down to the O2 concentrations present in the OMZ core (<10 nmol⋅L−1) is therefore essential for understanding and modeling nitrogen loss in OMZs. We determined rates of ammonium and nitrite oxidation in the seasonal OMZ off Concepcion, Chile at manipulated O2 levels between 5 nmol⋅L−1 and 20 μmol⋅L−1. Rates of both processes were detectable in the low nanomolar range (5–33 nmol⋅L−1 O2), but demonstrated a strong dependence on O2 concentrations with apparent half-saturation constants (Kms) of 333 ± 130 nmol⋅L−1 O2 for ammonium oxidation and 778 ± 168 nmol⋅L−1 O2 for nitrite oxidation assuming one-component Michaelis–Menten kinetics. Nitrite oxidation rates, however, were better described with a two-component Michaelis–Menten model, indicating a high-affinity component with a Km of just a few nanomolar. As the communities of ammonium and nitrite oxidizers were similar to other OMZs, these kinetics should apply across OMZ systems. The high O2 affinities imply that ammonium and nitrite oxidation can occur within the OMZ core whenever O2 is supplied, for example, by episodic intrusions. These processes therefore compete with anammox and denitrification for ammonium and nitrite, thereby exerting an important control over nitrogen loss. PMID:27601665

Splenic marginal zone lymphoma: comprehensive analysis of gene expression and miRNA profiling.

PubMed

Arribas, Alberto J; Gómez-Abad, Cristina; Sánchez-Beato, Margarita; Martinez, Nerea; Dilisio, Lorena; Casado, Felipe; Cruz, Miguel A; Algara, Patrocinio; Piris, Miguel A; Mollejo, Manuela

2013-07-01

Splenic marginal zone lymphoma is a small B-cell neoplasm whose molecular pathogenesis is still essentially unknown and whose differentiation from other small B-cell lymphomas is hampered by the lack of specific markers. We have analyzed the gene expression and miRNA profiles of 31 splenic marginal zone lymphoma cases. For comparison, 7 spleens with reactive lymphoid hyperplasia, 10 spleens infiltrated by chronic lymphocytic leukemia, 12 spleens with follicular lymphoma, 6 spleens infiltrated by mantle cell lymphoma and 15 lymph nodes infiltrated by nodal marginal zone lymphoma were included. The results were validated by qRT-PCR in an independent series including 77 paraffin-embedded splenic marginal zone lymphomas. The splenic marginal zone lymphoma miRNA signature had deregulated expression of 51 miRNAs. The most highly overexpressed miRNAs were miR-155, miR-21, miR-34a, miR-193b and miR-100, while the most repressed miRNAs were miR-377, miR-27b, miR-145, miR-376a and miR-424. MiRNAs located in 14q32-31 were underexpressed in splenic marginal zone lymphoma compared with reactive lymphoid tissues and other B-cell lymphomas. Finally, the gene expression data were integrated with the miRNA profile to identify functional relationships between genes and deregulated miRNAs. Our study reveals miRNAs that are deregulated in splenic marginal zone lymphoma and identifies new candidate diagnostic molecules for splenic marginal zone lymphoma.

Great earthquakes along the Western United States continental margin: implications for hazards, stratigraphy and turbidite lithology

NASA Astrophysics Data System (ADS)

Nelson, C. H.; Gutiérrez Pastor, J.; Goldfinger, C.; Escutia, C.

2012-11-01

We summarize the importance of great earthquakes (Mw ≳ 8) for hazards, stratigraphy of basin floors, and turbidite lithology along the active tectonic continental margins of the Cascadia subduction zone and the northern San Andreas Transform Fault by utilizing studies of swath bathymetry visual core descriptions, grain size analysis, X-ray radiographs and physical properties. Recurrence times of Holocene turbidites as proxies for earthquakes on the Cascadia and northern California margins are analyzed using two methods: (1) radiometric dating (14C method), and (2) relative dating, using hemipelagic sediment thickness and sedimentation rates (H method). The H method provides (1) the best estimate of minimum recurrence times, which are the most important for seismic hazards risk analysis, and (2) the most complete dataset of recurrence times, which shows a normal distribution pattern for paleoseismic turbidite frequencies. We observe that, on these tectonically active continental margins, during the sea-level highstand of Holocene time, triggering of turbidity currents is controlled dominantly by earthquakes, and paleoseismic turbidites have an average recurrence time of ~550 yr in northern Cascadia Basin and ~200 yr along northern California margin. The minimum recurrence times for great earthquakes are approximately 300 yr for the Cascadia subduction zone and 130 yr for the northern San Andreas Fault, which indicates both fault systems are in (Cascadia) or very close (San Andreas) to the early window for another great earthquake. On active tectonic margins with great earthquakes, the volumes of mass transport deposits (MTDs) are limited on basin floors along the margins. The maximum run-out distances of MTD sheets across abyssal-basin floors along active margins are an order of magnitude less (~100 km) than on passive margins (~1000 km). The great earthquakes along the Cascadia and northern California margins cause seismic strengthening of the sediment, which results in a margin stratigraphy of minor MTDs compared to the turbidite-system deposits. In contrast, the MTDs and turbidites are equally intermixed on basin floors along passive margins with a mud-rich continental slope, such as the northern Gulf of Mexico. Great earthquakes also result in characteristic seismo-turbidite lithology. Along the Cascadia margin, the number and character of multiple coarse pulses for correlative individual turbidites generally remain constant both upstream and downstream in different channel systems for 600 km along the margin. This suggests that the earthquake shaking or aftershock signature is normally preserved, for the stronger (Mw ≥ 9) Cascadia earthquakes. In contrast, the generally weaker (Mw = or <8) California earthquakes result in upstream simple fining-up turbidites in single tributary canyons and channels; however, downstream mainly stacked turbidites result from synchronously triggered multiple turbidity currents that deposit in channels below confluences of the tributaries. Consequently, both downstream channel confluences and the strongest (Mw ≥ 9) great earthquakes contribute to multi-pulsed and stacked turbidites that are typical for seismo-turbidites generated by a single great earthquake. Earthquake triggering and multi-pulsed or stacked turbidites also become an alternative explanation for amalgamated turbidite beds in active tectonic margins, in addition to other classic explanations. The sedimentologic characteristics of turbidites triggered by great earthquakes along the Cascadia and northern California margins provide criteria to help distinguish seismo-turbidites in other active tectonic margins.

SAR11 bacteria linked to ocean anoxia and nitrogen loss

PubMed Central

Tsementzi, Despina; Wu, Jieying; Deutsch, Samuel; Nath, Sangeeta; Rodriguez-R, Luis M; Burns, Andrew S.; Ranjan, Piyush; Sarode, Neha; Malmstrom, Rex R.; Padilla, Cory C.; Stone, Benjamin K.; Bristow, Laura A.; Larsen, Morten; Glass, Jennifer B.; Thamdrup, Bo; Woyke, Tanja; Konstantinidis, Konstantinos T.; Stewart, Frank J.

2016-01-01

Summary Bacteria of the SAR11 clade constitute up to one half of all microbial cells in the oxygen-rich surface ocean. DNA sequences from SAR11 are also abundant in oxygen minimum zones (OMZs) where oxygen falls below detection and anaerobic microbes play important roles in converting bioavailable nitrogen to N2 gas. Evidence for anaerobic metabolism in SAR11 has not yet been observed, and the question of how these bacteria contribute to OMZ biogeochemical cycling is unanswered. Here, we identify the metabolic basis for SAR11 activity in anoxic ocean waters. Genomic analysis of single cells from the world’s largest OMZ revealed diverse and previously uncharacterized SAR11 lineages that peak in abundance at anoxic depths, but are largely undetectable in oxygen-rich ocean regions. OMZ SAR11 contain adaptations to low oxygen, including genes for respiratory nitrate reductases (Nar). SAR11 nar genes were experimentally verified to encode proteins catalyzing the nitrite-producing first step of denitrification and constituted ~40% of all OMZ nar transcripts, with transcription peaking in the zone of maximum nitrate reduction rates. These results redefine the ecological niche of Earth’s most abundant organismal group and suggest an important contribution of SAR11 to nitrite production in OMZs, and thus to pathways of ocean nitrogen loss. PMID:27487207

Genetically Engineered Lymphocytes, Cyclophosphamide, and Aldesleukin in Treating Patients With Relapsed or Refractory Mantle Cell Lymphoma or Indolent B-Cell Non-Hodgkin Lymphoma

ClinicalTrials.gov

2014-08-04

B-cell Chronic Lymphocytic Leukemia; Extranodal Marginal Zone B-cell Lymphoma of Mucosa-associated Lymphoid Tissue; Nodal Marginal Zone B-cell Lymphoma; Recurrent Grade 1 Follicular Lymphoma; Recurrent Grade 2 Follicular Lymphoma; Recurrent Mantle Cell Lymphoma; Recurrent Marginal Zone Lymphoma; Recurrent Small Lymphocytic Lymphoma; Refractory Chronic Lymphocytic Leukemia; Splenic Marginal Zone Lymphoma; Waldenström Macroglobulinemia

The Paleoceanography of the Bering Sea During the Last Glacial Cycle

DTIC Science & Technology

2006-02-01

Stabeno, 1998). Water from the Bering (1995) inferred that the oxygen minimum zone Sea is relatively low salinity and rich in nutrients, (OMZ...fresher, warmer, and enriched in nutrients, particu- planktonic species Neogloboquadrina pachyderma larly silicate, which dissolves from opal- rich seafloor...2- rich 33 North Pacific intermediate water (NPIW), (2) decrease in the [02] of newly-formed NPIW without a change in ventilation rate (Crusius et al

Metabolic versatility of a novel N2 -fixing Alphaproteobacterium isolated from a marine oxygen minimum zone.

PubMed

Martínez-Pérez, Clara; Mohr, Wiebke; Schwedt, Anne; Dürschlag, Julia; Callbeck, Cameron M; Schunck, Harald; Dekaezemacker, Julien; Buckner, Caroline R T; Lavik, Gaute; Fuchs, Bernhard M; Kuypers, Marcel M M

2018-02-01

The N 2 -fixing (diazotrophic) community in marine ecosystems is dominated by non-cyanobacterial microorganisms. Yet, very little is known about their identity, function and ecological relevance due to a lack of cultured representatives. Here we report a novel heterotrophic diazotroph isolated from the oxygen minimum zone (OMZ) off Peru. The new species belongs to the genus Sagittula (Rhodobacteraceae, Alphaproteobacteria) and its capability to fix N 2 was confirmed in laboratory experiments. Genome sequencing revealed that it is a strict heterotroph with a high versatility in substrate utilization and energy acquisition mechanisms. Pathways for sulfide oxidation and nitrite reduction to nitrous oxide are encoded in the genome and might explain the presence throughout the Peruvian OMZ. The genome further indicates that this novel organism could be in direct interaction with other microbes or particles. NanoSIMS analyses were used to compare the metabolic potential of S. castanea with single-cell activity in situ; however, N 2 fixation by this diazotroph could not be detected at the isolation site. While the biogeochemical impact of S. castanea is yet to be resolved, its abundance and widespread distribution suggests that its potential to contribute to the marine N input could be significant at a larger geographical scale. © 2017 Society for Applied Microbiology and John Wiley & Sons Ltd.

Significance of archaeal nitrification in hypoxic waters of the Baltic Sea

NASA Astrophysics Data System (ADS)

Berg, C.; Vandieken, V.; Thamdrup, B.; Jürgens, K.

2012-04-01

Marine oxygen deficient areas are sites of important microbially mediated transformations within the nitrogen cycle. In the Baltic Sea, suboxic waters (oxygen below 5 μmol L-1) are considered to be a major nitrification zone within the water column. Recent evidence indicates that Archaea and not Bacteria are here the major ammonium oxidizers. In a Baltic Sea pelagic redoxcline, the crenarchaeotal subcluster GD2 which is related to the first cultivated ammonia-oxidizing crenarchaeote Candidatus Nitrosopumilus maritimus occurs in high abundance. However, little is known about its function and importance for the nitrogen and carbon cycles in oxygen minimum zones of the Baltic Sea. To approach this question, we sampled pelagic redoxclines in the Baltic Sea and determined the rates of nitrification and light-independent, inorganic carbon fixation via 15N and 14C isotope incubations, and quantified the abundance of putative ammonia-oxidizing Crenarchaeota by catalyzed reporter deposition fluorescence in situ hybridization (CARD-FISH). Nitrification was detectable throughout the suboxic zone with maxima of 122-131 nmol L-1 d-1 in layers with 1.8-7.1 μmol oxygen L-1 and ammonium below 0.2 μmol L-1. However, a nitrification potential was detected even in the upper anoxic, sulfidic zone. Crenarchaeotal abundance correlated strongly with nitrification rates and accounted for up to 24% of total prokaryotic cells. In contrast, the CO2 fixation in the suboxic zone was with 1.6-19.6 nmol L-1 d-1 rather low when compared to the subjacent anoxic, sulfidic waters. Our study indicates that ammonia oxidation in the suboxic zone of the Baltic Sea is mainly driven by Crenarchaeota. Their occurrence also in the anoxic, sulfidic water masses and the maintained nitrification potential point to special adaptations in this habitat with a potentially reduced sensitivity against hydrogen sulfide.

Hydrogenation of carbonaceous materials

DOEpatents

Friedman, Joseph; Oberg, Carl L.; Russell, Larry H.

1980-01-01

A method for reacting pulverized coal with heated hydrogen-rich gas to form hydrocarbon liquids suitable for conversion to fuels wherein the reaction involves injection of pulverized coal entrained in a minimum amount of gas and mixing the entrained coal at ambient temperature with a separate source of heated hydrogen. In accordance with the present invention, the hydrogen is heated by reacting a small portion of the hydrogen-rich gas with oxygen in a first reaction zone to form a gas stream having a temperature in excess of about 1000.degree. C. and comprising a major amount of hydrogen and a minor amount of water vapor. The coal particles then are reacted with the hydrogen in a second reaction zone downstream of the first reaction zone. The products of reaction may be rapidly quenched as they exit the second reaction zone and are subsequently collected.

Effects of ecological engineered oxygenation on the bacterial community structure in an anoxic fjord in western Sweden

PubMed Central

Forth, Michael; Liljebladh, Bengt; Stigebrandt, Anders; Hall, Per O J; Treusch, Alexander H

2015-01-01

Oxygen-depleted bodies of water are becoming increasingly common in marine ecosystems. Solutions to reverse this trend are needed and under development, for example, by the Baltic deep-water OXygenation (BOX) project. In the framework of this project, the Swedish Byfjord was chosen for a pilot study, investigating the effects of an engineered oxygenation on long-term anoxic bottom waters. The strong stratification of the water column of the Byfjord was broken up by pumping surface water into the deeper layers, triggering several inflows of oxygen-rich water and increasing oxygen levels in the lower water column and the benthic zone up to 110 μmol l−1.We used molecular ecologic methods to study changes in bacterial community structure in response to the oxygenation in the Byfjord. Water column samples from before, during and after the oxygenation as well as from two nearby control fjords were analyzed. Our results showed a strong shift in bacterial community composition when the bottom water in the Byfjord became oxic. Initially dominant indicator species for oxygen minimum zones such as members of the SUP05 clade declined in abundance during the oxygenation event and nearly vanished after the oxygenation was accomplished. In contrast, aerobic species like SAR11 that initially were restricted to surface waters could later be detected deep into the water column. Overall, the bacterial community in the formerly anoxic bottom waters changed to a community structure similar to those found in oxic waters, showing that an engineered oxygenation of a large body of anoxic marine water is possible and emulates that of a natural oxygenation event. PMID:25238400

Effects of ecological engineered oxygenation on the bacterial community structure in an anoxic fjord in western Sweden.

PubMed

Forth, Michael; Liljebladh, Bengt; Stigebrandt, Anders; Hall, Per O J; Treusch, Alexander H

2015-03-01

Oxygen-depleted bodies of water are becoming increasingly common in marine ecosystems. Solutions to reverse this trend are needed and under development, for example, by the Baltic deep-water OXygenation (BOX) project. In the framework of this project, the Swedish Byfjord was chosen for a pilot study, investigating the effects of an engineered oxygenation on long-term anoxic bottom waters. The strong stratification of the water column of the Byfjord was broken up by pumping surface water into the deeper layers, triggering several inflows of oxygen-rich water and increasing oxygen levels in the lower water column and the benthic zone up to 110 μmol l(-1).We used molecular ecologic methods to study changes in bacterial community structure in response to the oxygenation in the Byfjord. Water column samples from before, during and after the oxygenation as well as from two nearby control fjords were analyzed. Our results showed a strong shift in bacterial community composition when the bottom water in the Byfjord became oxic. Initially dominant indicator species for oxygen minimum zones such as members of the SUP05 clade declined in abundance during the oxygenation event and nearly vanished after the oxygenation was accomplished. In contrast, aerobic species like SAR11 that initially were restricted to surface waters could later be detected deep into the water column. Overall, the bacterial community in the formerly anoxic bottom waters changed to a community structure similar to those found in oxic waters, showing that an engineered oxygenation of a large body of anoxic marine water is possible and emulates that of a natural oxygenation event.

Fusion Protein Cytokine Therapy After Rituximab in Treating Patients With B-Cell Non-Hodgkin Lymphoma

ClinicalTrials.gov

2015-06-03

Anaplastic Large Cell Lymphoma; Cutaneous B-cell Non-Hodgkin Lymphoma; Extranodal Marginal Zone B-cell Lymphoma of Mucosa-associated Lymphoid Tissue; Intraocular Lymphoma; Nodal Marginal Zone B-cell Lymphoma; Recurrent Adult Diffuse Small Cleaved Cell Lymphoma; Recurrent Adult Grade III Lymphomatoid Granulomatosis; Recurrent Grade 1 Follicular Lymphoma; Recurrent Grade 2 Follicular Lymphoma; Recurrent Marginal Zone Lymphoma; Small Intestine Lymphoma; Splenic Marginal Zone Lymphoma; Testicular Lymphoma; Waldenstrom Macroglobulinemia

Bortezomib and Fludarabine With or Without Rituximab in Treating Patients With Relapsed or Refractory Indolent Non-Hodgkin's Lymphoma or Chronic Lymphocytic Leukemia

ClinicalTrials.gov

2013-09-27

Extranodal Marginal Zone B-cell Lymphoma of Mucosa-associated Lymphoid Tissue; Hematopoietic/Lymphoid Cancer; Nodal Marginal Zone B-cell Lymphoma; Recurrent Adult Diffuse Small Cleaved Cell Lymphoma; Recurrent Grade 1 Follicular Lymphoma; Recurrent Grade 2 Follicular Lymphoma; Recurrent Mantle Cell Lymphoma; Recurrent Marginal Zone Lymphoma; Recurrent Small Lymphocytic Lymphoma; Refractory Chronic Lymphocytic Leukemia; Splenic Marginal Zone Lymphoma; Waldenström Macroglobulinemia

Current status of emerging hypoxia in a eutrophic estuary: The lower reach of the Pearl River Estuary, China

NASA Astrophysics Data System (ADS)

Qian, Wei; Gan, Jianping; Liu, Jinwen; He, Biyan; Lu, Zhongming; Guo, Xianghui; Wang, Deli; Guo, Liguo; Huang, Tao; Dai, Minhan

2018-05-01

We examine the current status of dissolved oxygen (DO) and its trend over the past 25 years in the lower Pearl River Estuary, a large eutrophic estuary located in Southern China and surrounded by large cities including Hong Kong, Shenzhen and Guangzhou. Monthly cruises conducted from April 2010 to March 2011 clearly show that DO depletion began to emerge in the bottom layer of the lower estuary off Hong Kong in June, and became fully developed in July and August when oxygen-deficient water occupied ∼1000 km2 before gradually becoming re-oxygenated in September and October. The development of the low oxygen zone was closely coupled with phytoplankton blooms in the surface water, which was supersaturated with respect to DO suggesting the importance of autochthonous organic matter in fueling bottom DO consumption after settling through the pycnocline. Long-term monitoring data collected in the study area adjacent to Hong Kong by the Hong Kong Environmental Protection Department showed a decreasing trend of ∼2 ± 0.9 μmol kg-1 yr-1 in the annual minimum DO concentration in bottom water over the past 25 years. Associated with the decrease in DO was an increase in the annual maximum surface concentration of dissolved inorganic nitrogen (DIN) at a rate of ∼1.4 ± 0.3 μmol kg-1 yr-1, suggesting again that eutrophication is the most plausible driver of oxygen deficiency in this region. Therefore, our monthly cruises, along with the decadal monitoring data, reveal a large low oxygen zone, likely developing into a large hypoxic zone driven primarily by anthropogenic eutrophication. This new development suggests environmental stressors such as eutrophication may have a cascading effect, with important and expensive consequences for the regional environment.

Physicochemical Constraints on the Distribution of Benthic Foraminiferal Cell Morphology in the Modern Ocean

NASA Astrophysics Data System (ADS)

Keating-Bitonti, C.; Payne, J.

2016-02-01

Patterns in the sizes and shapes of marine organisms often occur across latitude and water depth gradients as a function of metabolic constraints dictated by the physical environment. However, the environmental factors that maintain these gradients in morphology remain incompletely understood because several oceanographic variables of biological importance are intimately correlated, such as temperature, dissolved oxygen concentration, particulate organic carbon (POC) flux, and carbonate saturation. Benthic foraminifera, a diverse group of single-celled protists that occur in nearly all marine environments, provide an ideal opportunity to test statistically among the various hypothesized environmental controls on cell morphology. Here, we use over 7,000 occurrences of 541 species of recent benthic foraminifera that span more than 60 degrees of latitude and 1,600 meters of water depth around the North American continental margin to assess the relative contributions of temperature, oxygen availability, carbonate saturation, and POC flux on their size and volume-to-surface area ratio in the modern ocean. Seawater temperature and dissolved oxygen concentrations best predict both measures of benthic foraminiferal cell morphology from the North American continental margin. These same variables also explain morphological variations from the Pacific continental margin in isolation, but dissolved oxygen is absent from the best model for the Atlantic. Because our results concur with predictions from first principles of cell physiology, we interpret these findings to reflect the physiological selective pressures on cell morphology as determined by the physical environment. Moreover, these findings suggest that warming waters and the expansion of hypoxic zones associated with anthropogenic-induced climate change are more likely to impact benthic foraminiferal communities than changes in primary productivity or ocean acidification.

Pore pressure development and progressive dewatering in underthrust sediments at the Costa Rican subduction margin: Comparison with northern Barbados and Nankai

NASA Astrophysics Data System (ADS)

Saffer, Demian M.

2003-05-01

At subduction zones, pore pressure affects fault strength, deformation style, structural development, and potentially the updip limit of seismogenic faulting behavior through its control on effective stress and consolidation state. Despite its importance for a wide range of subduction zone processes, few detailed measurements or estimates of pore pressure at subduction zones exist. In this paper, I combine logging-while-drilling (LWD) data, downhole physical properties data, and laboratory consolidation tests from the Costa Rican, Nankai, and Barbados subduction zones, to document the development and downsection variability of effective stress and pore pressure within underthrust sediments as they are progressively loaded by subduction. At Costa Rica, my results suggest that the lower portion of the underthrust section remains nearly undrained, whereas the upper portion is partially drained. An inferred minimum in effective stress developed within the section ˜1.5 km landward of the trench is consistent with core and seismic observations of faulting, and illustrates the important effects of heterogeneous drainage on structural development. Inferred pore pressures at the Nankai and northern Barbados subduction zones indicate nearly undrained conditions throughout the studied intervals, and are consistent with existing direct measurements and consolidation test results. Slower dewatering at Nankai and Barbados than at Costa Rica can be attributed to higher permeability and larger compressibility of near-surface sediments underthrust at Costa Rica. Results for the three margins indicate that the pore pressure ratio (λ) in poorly drained underthrust sediments should increase systematically with distance landward of the trench, and may vary with depth.

Quantifying the correlation between spatially defined oxygen gradients and cell fate in an engineered three-dimensional culture model.

PubMed

Ardakani, Amir G; Cheema, Umber; Brown, Robert A; Shipley, Rebecca J

2014-09-06

A challenge in three-dimensional tissue culture remains the lack of quantitative information linking nutrient delivery and cellular distribution. Both in vivo and in vitro, oxygen is delivered by diffusion from its source (blood vessel or the construct margins). The oxygen level at a defined distance from its source depends critically on the balance of diffusion and cellular metabolism. Cells may respond to this oxygen environment through proliferation, death and chemotaxis, resulting in spatially resolved gradients in cellular density. This study extracts novel spatially resolved and simultaneous data on tissue oxygenation, cellular proliferation, viability and chemotaxis in three-dimensional spiralled, cellular collagen constructs. Oxygen concentration gradients drove preferential cellular proliferation rates and viability in the higher oxygen zones and induced chemotaxis along the spiral of the collagen construct; an oxygen gradient of 1.03 mmHg mm(-1) in the spiral direction induced a mean migratory speed of 1015 μm day(-1). Although this movement was modest, it was effective in balancing the system to a stable cell density distribution, and provided insights into the natural cell mechanism for adapting cell number and activity to a prevailing oxygen regime.

Nitrate and Nitrite Variability at the Seafloor of an Oxygen Minimum Zone Revealed by a Novel Microfluidic In-Situ Chemical Sensor

PubMed Central

Yücel, Mustafa; Beaton, Alexander D.; Dengler, Marcus; Mowlem, Matthew C.; Sohl, Frank; Sommer, Stefan

2015-01-01

Microfluidics, or lab-on-a-chip (LOC) is a promising technology that allows the development of miniaturized chemical sensors. In contrast to the surging interest in biomedical sciences, the utilization of LOC sensors in aquatic sciences is still in infancy but a wider use of such sensors could mitigate the undersampling problem of ocean biogeochemical processes. Here we describe the first underwater test of a novel LOC sensor to obtain in situ calibrated time-series (up to 40 h) of nitrate+nitrite (ΣNOx) and nitrite on the seafloor of the Mauritanian oxygen minimum zone, offshore Western Africa. Initial tests showed that the sensor successfully reproduced water column (160 m) nutrient profiles. Lander deployments at 50, 100 and 170 m depth indicated that the biogeochemical variability was high over the Mauritanian shelf: The 50 m site had the lowest ΣNOx concentration, with 15.2 to 23.4 μM (median=18.3 μM); while at the 100 site ΣNOx varied between 21.0 and 30.1 μM over 40 hours (median = 25.1μM). The 170 m site had the highest median ΣNOx level (25.8 μM) with less variability (22.8 to 27.7 μM). At the 50 m site, nitrite concentration decreased fivefold from 1 to 0.2 μM in just 30 hours accompanied by decreasing oxygen and increasing nitrate concentrations. Taken together with the time series of oxygen, temperature, pressure and current velocities, we propose that the episodic intrusion of deeper waters via cross-shelf transport leads to intrusion of nitrate-rich, but oxygen-poor waters to shallower locations, with consequences for benthic nitrogen cycling. This first validation of an LOC sensor at elevated water depths revealed that when deployed for longer periods and as a part of a sensor network, LOC technology has the potential to contribute to the understanding of the benthic biogeochemical dynamics. PMID:26161958

Oxygen, ecology, and the Cambrian radiation of animals

PubMed Central

Sperling, Erik A.; Frieder, Christina A.; Raman, Akkur V.; Girguis, Peter R.; Levin, Lisa A.; Knoll, Andrew H.

2013-01-01

The Proterozoic-Cambrian transition records the appearance of essentially all animal body plans (phyla), yet to date no single hypothesis adequately explains both the timing of the event and the evident increase in diversity and disparity. Ecological triggers focused on escalatory predator–prey “arms races” can explain the evolutionary pattern but not its timing, whereas environmental triggers, particularly ocean/atmosphere oxygenation, do the reverse. Using modern oxygen minimum zones as an analog for Proterozoic oceans, we explore the effect of low oxygen levels on the feeding ecology of polychaetes, the dominant macrofaunal animals in deep-sea sediments. Here we show that low oxygen is clearly linked to low proportions of carnivores in a community and low diversity of carnivorous taxa, whereas higher oxygen levels support more complex food webs. The recognition of a physiological control on carnivory therefore links environmental triggers and ecological drivers, providing an integrated explanation for both the pattern and timing of Cambrian animal radiation. PMID:23898193

NF-κB deregulation in splenic marginal zone lymphoma.

PubMed

Spina, Valeria; Rossi, Davide

2016-08-01

Splenic marginal zone lymphoma is a rare mature B-cell malignancy involving the spleen, bone marrow and blood. Over the past years, the rapid expansion of sequencing technologies allowing the genome-wide assessment of genomic, epigenetic and transcriptional changes has revolutionized our understanding of the biological basis of splenic marginal zone lymphoma by providing a comprehensive and unbiased view of the genes/pathways that are deregulated in this disease. NF-κB is a family of transcription factors that plays critical roles in development, survival, and activation of B lymphocytes. Consistent with the physiological involvement of NF-κB signalling in proliferation and commitment of mature B-cells to the marginal zone of the spleen, many oncogenic mutations involved in constitutive activation of the NF-κB pathway were recently identified in splenic marginal zone lymphoma. This review describes the progress in understanding the mechanism of NF-κB activation in splenic marginal zone lymphoma, including molecular, epigenetic and post-transcriptional modifications of NF-κB genes and of upstream pathways, and discusses how information gained from these efforts has provided new insights on potential targets of diagnostic, prognostic and therapeutic relevance for splenic marginal zone lymphoma. Copyright © 2016. Published by Elsevier Ltd.

Methyl mercury distributions in relation to the presence of nano- and picophytoplankton in an oceanic water column (Ligurian Sea, North-western Mediterranean)

NASA Astrophysics Data System (ADS)

Heimbürger, Lars-Eric; Cossa, Daniel; Marty, Jean-Claude; Migon, Christophe; Averty, Bernard; Dufour, Aurélie; Ras, Josephine

2010-10-01

Recent findings on the distribution of methylated mercury (MeHg T) in waters have highlighted the importance of organic carbon remineralization on the production of these compounds in the open ocean. Here, we present the first time-series (20 monthly samplings between July 2007 and May 2009) of high-resolution vertical profiles (10-12 depths in a 2350 m water column) of MeHg T distributions in an open ocean environment, the Ligurian Sea (North-western Mediterranean Sea). Concentrations varied within the sub-picomolar range (general mean: 0.30 ± 0.17 pmol L -1, n = 214) with the lowest values at the surface, increasing with depth up to the oxygen minimum zone, and decreasing slowly at greater depth. Concentrations in the surface waters never exceeded 0.15 pmol L -1, while the highest concentrations (up to 0.82 pmol L -1) were associated to the hypoxycline during the autumn bloom. A detailed vertical MeHg T profile reveals a "double-peak" pattern, coincidental with the two microbial layers described by Tanaka and Rassoulzadegan (2002), the so-called "microbial food web" in the euphotic zone (<100 m) and the "microbial loop" in the aphotic zone (>100 m). Temporal variations in the MeHg T abundance and distribution in the water column were linked to seasonality. The highest MeHg T concentrations were found in the oxygen minimum zone during the period of stratification, and coincide with the greatest abundance of nano- and picophytoplankton (cyanobacteria, nanoflagellates, etc.) in the euphotic layer. None of our deep MeHg T measurements (˜100 m above the sea bottom) revealed a significant sedimentary source of MeHg T. We explored the correlation between MeHg T concentrations and the apparent oxygen utilization, a proxy of organic matter remineralization, over the study period. Results of this study strengthen the hypothesis that net mercury methylation in the open ocean occurs in the water column, is linked to organic matter regeneration, and is promoted by the presence of small-sized nano- and picophytoplankton, that dominate under oligotrophic conditions.

Bryostatin 1 Plus Vincristine in Treating Patients With Progressive or Relapsed Non-Hodgkin's Lymphoma After Bone Marrow or Stem Cell Transplantation

ClinicalTrials.gov

2013-01-09

Extranodal Marginal Zone B-cell Lymphoma of Mucosa-associated Lymphoid Tissue; Nodal Marginal Zone B-cell Lymphoma; Recurrent Adult Diffuse Large Cell Lymphoma; Recurrent Adult Diffuse Mixed Cell Lymphoma; Recurrent Adult Diffuse Small Cleaved Cell Lymphoma; Recurrent Grade 1 Follicular Lymphoma; Recurrent Grade 2 Follicular Lymphoma; Recurrent Grade 3 Follicular Lymphoma; Recurrent Mantle Cell Lymphoma; Recurrent Marginal Zone Lymphoma; Recurrent Small Lymphocytic Lymphoma; Splenic Marginal Zone Lymphoma

Short-term alteration of biotic and abiotic components of the pelagic system in a shallow bay produced by a strong natural hypoxia event.

PubMed

Hernández-Miranda, Eduardo; Veas, Rodrigo; Anabalón, Valeria; Quiñones, Renato A

2017-01-01

In January 2008 there was an intensive and extensive upwelling event in the southern Humboldt Current System. This event produced an intrusion of water with low dissolved oxygen into Coliumo Bay, which caused massive mortality and the beaching of pelagic and benthic organisms, including zooplankton. During this event, which lasted 3 to 5 days, we studied and evaluated the effect of the hypoxic water in the bay on the abundance of macrozooplankton, nanoplankton and microphytoplankton, the concentration of several nutrients and hydrographic conditions. At the beginning of the hypoxia event the water column had very low dissolved oxygen concentrations (<0.5 mL O2 L-1), low temperatures and high salinity which are characteristics of the oxygen minimum zone from the Humboldt Current System. Redox, pH, nitrate, phosphate, silicate and chlorophyll-a values were the lowest, while nitrate and the phaeopigment values were the highest. The N:P ratio was below 16, and the abundance of nano- and microphytoplankton were at their lowest, the latter also with the lowest proportion of live organisms. Macrozooplankton had the greatest abundance during hypoxia, dominated mainly by crustacean, fish eggs and amphipods. The hypoxia event generated a strong short-term alteration of all biotic and abiotic components of the pelagic system in Coliumo Bay and the neighboring coastal zone. These negative effects associated with strong natural hypoxia events could have important consequences for the productivity and ecosystem functioning of the coastal zone of the Humboldt Current System if, as suggested by several models, winds favorable to upwelling should increase due to climate change. The effects of natural hypoxia in this coastal zone can be dramatic especially for pelagic and benthic species not adapted to endure conditions of low dissolved oxygen.

Chromophoric and fluorescent dissolved organic matter in and above the oxygen minimum zone off Peru

NASA Astrophysics Data System (ADS)

Loginova, A. N.; Thomsen, S.; Engel, A.

2016-11-01

As a result of nutrient upwelling, the Peruvian coastal system is one of the most productive regions in the ocean. Sluggish ventilation of intermediate waters, characteristic for the Eastern Tropical South Pacific (ETSP) and microbial degradation of a high organic matter load promotes deoxygenation at depth. Dissolved organic matter (DOM) plays a key role in microbial respiration and carbon cycling, but little is known on DOM distribution and cycling in the ETSP. DOM optical properties give important insights on DOM sources, structure and biogeochemical reactivity. Here, we present data and a conceptual view on distribution and cycling of chromophoric (CDOM) and fluorescent (FDOM) DOM in and above the oxygen minimum zone (OMZ) off Peru. Five fluorescent components were identified during PARAFAC analysis. Highest intensities of CDOM and of the amino acid-like fluorescent component (C3) occurred above the OMZ and coincided with maximum chl a concentrations, suggesting phytoplankton productivity as major source. High intensities of a marine humic-like fluorescent component (C1), observed in subsurface waters, indicated in situ microbial reworking of DOM. FDOM release from inner shelf sediment was determined by seawater analysis and continuous glider sensor measurement and included a humic-like component (C2) with a signature typical for terrestrially derived humic acids. Upwelling supplied humic-like substances to the euphotic zone. Photo-reactions were likely involved in the production of a humic-like fluorescent component (C5). Our data show that variable biological and physical processes need to be considered for understanding DOM cycling in a highly dynamic coastal upwelling system like the ETSP off Peru.

Small cell lymphocytic variant of marginal zone lymphoma: A distinct form of marginal zone lymphoma derived from naïve B cells as a cutaneous counterpart to the naïve marginal zone lymphoma of splenic origin.

PubMed

Magro, Cynthia M; Olson, Luke C

2018-02-21

Primary cutaneous marginal zone lymphoma most commonly represents an indolent form of cutaneous B cell lymphoma. However, epidermotropic marginal zone lymphoma, blastic marginal zone lymphoma and B cell dominant variants without isotype switching can be associated with extracutaneous dissemination. The presumptive cell of origin is a post germinal center B cell with plasmacytic features. In the extracutaneous setting, however, a naïve B cell origin has been proposed for a subset of marginal zone lymphomas, notably splenic marginal zone lymphoma. The author encountered 11 cases of atypical lymphocytic infiltration of the skin primarily occurring in older individuals with an upper arm and head and neck localization; there was a reproducible pattern of diffuse and nodular infiltration by small monomorphic-appearing B cells. Phenotypically, the infiltrate was one predominated by B cells exhibiting CD23 and IgD positivity without immunoreactivity for CD38 and there were either no plasma cells or only a few without light chain restriction. In cases presenting with a solitary lesion complete excision and/or radiation led to successful disease remission in all cases without recurrence or metastatic disease. Of three cases with multiple initial lesions, evidence of extracutaneous disease was seen in two cases and recurrence occurred in one case. No patients have died of lymphoma. Longer term follows up and additional cases are needed to determine if this subset of marginal zone lymphoma is associated with a worse prognosis. Copyright © 2018. Published by Elsevier Inc.

Coastal sources, sinks and strong organic complexation of dissolved cobalt within the US North Atlantic GEOTRACES transect GA03

NASA Astrophysics Data System (ADS)

Noble, Abigail E.; Ohnemus, Daniel C.; Hawco, Nicholas J.; Lam, Phoebe J.; Saito, Mak A.

2017-06-01

Cobalt is the scarcest of metallic micronutrients and displays a complex biogeochemical cycle. This study examines the distribution, chemical speciation, and biogeochemistry of dissolved cobalt during the US North Atlantic GEOTRACES transect expeditions (GA03/3_e), which took place in the fall of 2010 and 2011. Two major subsurface sources of cobalt to the North Atlantic were identified. The more prominent of the two was a large plume of cobalt emanating from the African coast off the eastern tropical North Atlantic coincident with the oxygen minimum zone (OMZ) likely due to reductive dissolution, biouptake and remineralization, and aeolian dust deposition. The occurrence of this plume in an OMZ with oxygen above suboxic levels implies a high threshold for persistence of dissolved cobalt plumes. The other major subsurface source came from Upper Labrador Seawater, which may carry high cobalt concentrations due to the interaction of this water mass with resuspended sediment at the western margin or from transport further upstream. Minor sources of cobalt came from dust, coastal surface waters and hydrothermal systems along the Mid-Atlantic Ridge. The full depth section of cobalt chemical speciation revealed near-complete complexation in surface waters, even within regions of high dust deposition. However, labile cobalt observed below the euphotic zone demonstrated that strong cobalt-binding ligands were not present in excess of the total cobalt concentration there, implying that mesopelagic labile cobalt was sourced from the remineralization of sinking organic matter. In the upper water column, correlations were observed between total cobalt and phosphate, and between labile cobalt and phosphate, demonstrating a strong biological influence on cobalt cycling. Along the western margin off the North American coast, this correlation with phosphate was no longer observed and instead a relationship between cobalt and salinity was observed, reflecting the importance of coastal input processes on cobalt distributions. In deep waters, both total and labile cobalt concentrations were lower than in intermediate depth waters, demonstrating that scavenging may remove labile cobalt from the water column. Total and labile cobalt distributions were also compared to a previously published South Atlantic GEOTRACES-compliant zonal transect (CoFeMUG, GAc01) to discern regional biogeochemical differences. Together, these Atlantic sectional studies highlight the dynamic ecological stoichiometry of total and labile cobalt. As increasing anthropogenic use and subsequent release of cobalt poses the potential to overpower natural cobalt signals in the oceans, it is more important than ever to establish a baseline understanding of cobalt distributions in the ocean.

NC10 Bacteria in a Marine Oxygen Minimum Zone

NASA Astrophysics Data System (ADS)

Padilla, C. C.; Bristow, L. A.; Benson, C. R.; Sarode, N. D.; Girguis, P. R.; Glass, J. B.; DiChristina, T. J.; Thamdrup, B.; Stewart, F. J.

2014-12-01

Marine oxygen minimum zones (OMZs) are key regions of nitrogen cycling and nitrogen loss as N2. The potential for methane cycling to influence OMZ nitrogen budgets remains largely unknown. The anaerobic oxidation of methane (AOM) coupled to nitrite or nitrate reduction has been shown to be a potential source of methane consumption, N loss, and oxygen production in freshwater sediments, but has not been described for marine pelagic environments. Nitrite-dependent AOM is performed by bacteria of the candidate division NC10 through an intra-aerobic pathway involving the dismutation of nitric oxide to O2 and N2. We explored the potential that NC10-like bacteria are present and active in the anoxic, nitrite-rich OMZ of the Eastern Tropical North Pacific. Community transcriptome sequencing confirmed the expression of genes with top matches to the NC10 bacterium 'Candidatus Methylomirabilis oxyfera.' NC10-like transcripts increased in relative abundance with depth into the anoxic OMZ core and included genes of aerobic methanotrophy and denitrification, as well as high numbers of transcripts matching norZ nitric oxide reductase, hypothesized to play a role in the O2-yielding dismutation reaction. Phylogenetic analysis of OMZ particulate methane monooxygenase (pmoA) and 16S rRNA gene sequences recovered by PCR revealed multiple clades of NC10 phylotypes in the OMZ. Preliminary data from OMZ enrichments revealed methane-dependent nitrite consumption, but further characterization is required to identify the pathways and organisms mediating this process. These findings expand the known environmental range of NC10 and suggest the possibility of previously uncharacterized linkages between OMZ nitrogen and methane cycles.

Community composition of ammonia-oxidizing archaea from surface and anoxic depths of oceanic oxygen minimum zones.

PubMed

Peng, Xuefeng; Jayakumar, Amal; Ward, Bess B

2013-01-01

Ammonia-oxidizing archaea (AOA) have been reported at high abundance in much of the global ocean, even in environments, such as pelagic oxygen minimum zones (OMZs), where conditions seem unlikely to support aerobic ammonium oxidation. Due to the lack of information on any potential alternative metabolism of AOA, the AOA community composition might be expected to differ between oxic and anoxic environments. This hypothesis was tested by evaluating AOA community composition using a functional gene microarray that targets the ammonia monooxygenase gene subunit A (amoA). The relationship between environmental parameters and the biogeography of the Arabian Sea and the Eastern Tropical South Pacific (ETSP) AOA assemblages was investigated using principal component analysis (PCA) and redundancy analysis (RDA). In both the Arabian Sea and the ETSP, AOA communities within the core of the OMZ were not significantly different from those inhabiting the oxygenated surface waters above the OMZ. The AOA communities in the Arabian Sea were significantly different from those in the ETSP. In both oceans, the abundance of archaeal amoA gene in the core of the OMZ was higher than that in the surface waters. Our results indicate that AOA communities are distinguished by their geographic origin. RDA suggested that temperature (higher in the Arabian Sea than in the ETSP) was the main factor that correlated with the differences between the AOA communities. Physicochemical properties that characterized the different environments of the OMZ and surface waters played a less important role, than did geography, in shaping the AOA community composition.

Rituximab and Interleukin-12 in Treating Patients With B-Cell Non-Hodgkin's Lymphoma

ClinicalTrials.gov

2013-08-23

Extranodal Marginal Zone B-cell Lymphoma of Mucosa-associated Lymphoid Tissue; Nodal Marginal Zone B-cell Lymphoma; Recurrent Grade 1 Follicular Lymphoma; Recurrent Grade 2 Follicular Lymphoma; Recurrent Mantle Cell Lymphoma; Recurrent Small Lymphocytic Lymphoma; Splenic Marginal Zone Lymphoma

Nitrite oxidation in the upper water column and oxygen minimum zone of the eastern tropical North Pacific Ocean

PubMed Central

Beman, J Michael; Leilei Shih, Joy; Popp, Brian N

2013-01-01

Nitrogen (N) is an essential nutrient in the sea and its distribution is controlled by microorganisms. Within the N cycle, nitrite (NO2−) has a central role because its intermediate redox state allows both oxidation and reduction, and so it may be used by several coupled and/or competing microbial processes. In the upper water column and oxygen minimum zone (OMZ) of the eastern tropical North Pacific Ocean (ETNP), we investigated aerobic NO2− oxidation, and its relationship to ammonia (NH3) oxidation, using rate measurements, quantification of NO2−-oxidizing bacteria via quantitative PCR (QPCR), and pyrosequencing. 15NO2− oxidation rates typically exhibited two subsurface maxima at six stations sampled: one located below the euphotic zone and beneath NH3 oxidation rate maxima, and another within the OMZ. 15NO2− oxidation rates were highest where dissolved oxygen concentrations were <5 μM, where NO2− accumulated, and when nitrate (NO3−) reductase genes were expressed; they are likely sustained by NO3− reduction at these depths. QPCR and pyrosequencing data were strongly correlated (r2=0.79), and indicated that Nitrospina bacteria numbered up to 9.25% of bacterial communities. Different Nitrospina groups were distributed across different depth ranges, suggesting significant ecological diversity within Nitrospina as a whole. Across the data set, 15NO2− oxidation rates were decoupled from 15NH4+ oxidation rates, but correlated with Nitrospina (r2=0.246, P<0.05) and NO2− concentrations (r2=0.276, P<0.05). Our findings suggest that Nitrospina have a quantitatively important role in NO2− oxidation and N cycling in the ETNP, and provide new insight into their ecology and interactions with other N-cycling processes in this biogeochemically important region of the ocean. PMID:23804152

Anammox bacteria and the anaerobic oxidation of ammonium in the oxygen minimum zone off northern Chile

NASA Astrophysics Data System (ADS)

Galán, Alexander; Molina, Verónica; Thamdrup, Bo; Woebken, Dagmar; Lavik, Gaute; Kuypers, Marcel M. M.; Ulloa, Osvaldo

2009-07-01

Anammox is the anaerobic oxidation of ammonium by nitrite or nitrate to yield N 2. This process, along with conventional denitrification, contributes to nitrogen loss in oxygen-deficient systems. Anammox is performed by a special group of bacteria belonging to the Planctomycetes phylum. However, information about the distribution, activity, and controlling factors of these anammox bacteria is still limited. Herein, we examine the phylogenetic diversity, vertical distribution, and activity of anammox bacteria in the coastal upwelling region and oxygen minimum zone off northern Chile. The phylogeny of anammox bacteria was studied using primers designed to specifically target 16S rRNA genes from Planctomycetes in samples taken during a cruise in 2004. Anammox bacteria-like sequences affiliated with Candidatus "Scalindua spp." dominated the 16S rRNA gene clone library. However, 62% of the sequences subgrouped separately within this cluster and together with a single sequence retrieved from the suboxic zone of the freshwater Lake Tanganyika. The vertical distribution and activity of anammox bacteria were explored through CARD-FISH (fluorescence in situ hybridization with catalyzed reporter deposition) and 15N labeling incubations, respectively, at two different open-ocean stations during a second cruise in 2005. Anammox bacterial CARD-FISH counts (up to 3000 cells ml -1) and activity (up to 5.75 nmol N 2 L -1 d -1) were only detected at the station subjected directly to the upwelling influence. Anammox cell abundance and activity were highest at 50 m depth, which is the upper part of the OMZ. In this layer, a high abundance of cyanobacteria and a marked nitrogen deficit were also observed. Thus, our results show the presence of a new subcluster within the marine anammox phylogeny and indicate high vertical variability in the abundance and activity of anammox bacteria that could be related to an intensification of carbon and nitrogen cycling in the upper part of the OMZ.

A compendium of geochemical information from the Saanich Inlet water column

NASA Astrophysics Data System (ADS)

Torres-Beltrán, Mónica; Hawley, Alyse K.; Capelle, David; Zaikova, Elena; Walsh, David A.; Mueller, Andreas; Scofield, Melanie; Payne, Chris; Pakhomova, Larysa; Kheirandish, Sam; Finke, Jan; Bhatia, Maya; Shevchuk, Olena; Gies, Esther A.; Fairley, Diane; Michiels, Céline; Suttle, Curtis A.; Whitney, Frank; Crowe, Sean A.; Tortell, Philippe D.; Hallam, Steven J.

2017-10-01

Extensive and expanding oxygen minimum zones (OMZs) exist at variable depths in coastal and open ocean waters. As oxygen levels decline, nutrients and energy are increasingly diverted away from higher trophic levels into microbial community metabolism, resulting in fixed nitrogen loss and production of climate active trace gases including nitrous oxide and methane. While ocean deoxygenation has been reported on a global scale, our understanding of OMZ biology and geochemistry is limited by a lack of time-resolved data sets. Here, we present a historical dataset of oxygen concentrations spanning fifty years and nine years of monthly geochemical time series observations in Saanich Inlet, a seasonally anoxic fjord on the coast of Vancouver Island, British Columbia, Canada that undergoes recurring changes in water column oxygenation status. This compendium provides a unique geochemical framework for evaluating long-term trends in biogeochemical cycling in OMZ waters.

Near-bed environmental conditions influencing cold-water coral growth on Viosca Knoll, Gulf of Mexico

NASA Astrophysics Data System (ADS)

Mienis, F.; Duineveld, G.; Davies, A. J.; Weering, T. V.; Ross, S.; Roberts, M.; Seim, H.

2010-12-01

During recent decades research has shown that cold-water coral (CWC) ecosystems are widely distributed on the margins of the Atlantic Ocean, representing the most species rich ecosystems in the upper bathyal zone. On the European continental margin and the continental slope from North Carolina to Florida, CWCs have formed large reef and mound structures. Presently detailed studies on the environmental constraints in CWC areas are limited to the NE Atlantic. This is the first study showing long-term environmental variability in a CWC habitat in the West Atlantic. The most extensive CWC area known in the Gulf of Mexico is found on the Viosca Knoll (480 m), located in the vicinity of the Mississippi River. This source dominates sedimentation patterns, discharging large amounts of sediments and dispersing organic matter and nutrients. In the coral area, CTD transects were made and benthic landers were deployed for a period of 12 months to identify near-bed environmental conditions, seasonal variability and the forcing mechanisms of particle supply. The importance of studying the functioning of deep water ecosystems was underpinned by the recent Deepwater Horizon oil spill, which might pose a risk for the CWC ecosystems. CTD transects showed an oxygen minimum zone at the depth of the corals. Long term deployments of landers revealed intra-annual temperature (6.5-11.6 °C) and salinity fluctuations, which co-vary during the year. Food supply appears not to be driven by surface processes due to low fluorescence (except for two periods in April and June), but an indirect mechanism of transport may be a 24 hour diel vertical migration of zooplankton. The average current speed in the area varies at around 8 cms-1, whilst peak current speeds were recorded up to 38 cms-1. East-west currents are strongest in the area corresponding with flow along isobaths. During westward flow, the amount of particles in the water column increases, while during eastward flow clearer water is transported to the area. Sediment trap samples show a similar pattern and high mass fluxes are found, varying between 1.1-4.5 gm-2day-1. High mass fluxes and turbidity values can be related to an increased input of material coming from the Mississippi River. The environmental conditions on Viosca Knoll resemble those recorded in CWC areas on the European margin. Even though oxygen values are low and high mass fluxes were recorded, the CWC ecosystem thrives at present. The proximity of the area to the Mississippi River may benefit the corals by increasing the food supply. Migration of zooplankton and episodes of fresh particle supply from surface water form the mechanisms of food delivery, influencing CWC growth. Subsequently baffling of particles between the coral framework likely increases lateral extension and reef growth.

A tracer study of ventilation in the Japan/East Sea

NASA Astrophysics Data System (ADS)

Postlethwaite, C. F.; Rohling, E. J.; Jenkins, W. J.; Walker, C. F.

2005-06-01

During the Circulation Research in East Asian Marginal Seas (CREAMS) summer cruises in 1999, a suite of samples was collected for tracer analysis. Oxygen isotopes combined with tritium-helium ventilation timescales and noble gas measurements give unique insights into the ventilation of water masses in the Japan/East Sea (JES). In particular, noble gases and oxygen isotopes are indicators of brine rejection, which may assist in explaining the recent changes observed in the ventilation of the JES. Oxygen isotope data presented here indicate that both thermally driven convection and brine rejection have played significant roles in deep-water formation but that brine rejection is unlikely to be a significant contributor at the moment. A 6-box ventilation model of the JES, calibrated with tritium and helium-3 measurements, performed better when a significant decrease of dense-water formation rates in the mid-1960s was incorporated. However, the model calculations suggest that Japan Sea Intermediate Water formation is still occurring. Subduction of sea-ice melt water may be a significant ventilation mechanism for this water mass, based on an argon saturation minimum at the recently ventilated salinity minimum in the northwestern sector of the JES. The salinity and oxygen isotope budgets imply a potential bottom-water formation rate of 3.97±0.89×10 12 m 3 yr -1 due to brine rejection, which could account for a time averaged fraction of between 25% and 35% of the ventilation of subsurface water formation in the JES.

Thermochronometry Across the Austroalpine-Pennine Boundary, Central Alps, Switzerland: Orogen-Perpendicular Normal Fault Slip on a Major "Overthrust" and Its Implications for Orogenesis

NASA Astrophysics Data System (ADS)

Price, Jason B.; Wernicke, Brian P.; Cosca, Michael A.; Farley, Kenneth A.

2018-03-01

Fifty-one new and 309 published thermochronometric ages (nine systems with closure temperatures ranging from 450 to 70°C) from the Graubünden region of the Central Alps demonstrate that a pronounced thermal mismatch between the Austroalpine allochthon (Alpine "orogenic lid") and the Pennine zone persisted until at least 29 Ma and, allowably, until circa 18 Ma. The observed mismatch supports previous suggestions that the famous "overthrust" between the Austroalpine allochthon and the Pennine zone, historically regarded as primarily an Eocene top-north thrust fault, is in fact primarily an Oligocene-Miocene normal fault that has a minimum of 60 km of displacement with top-south or top-southeast sense of shear. Two hallmarks of Alpine geology, deposition of the foredeep Molasse and emplacement of the Helvetic nappes, appear to be coeval, peripheral manifestations of crustal thickening via the interposition of the Pennine zone as a northward intruding wedge between the Austroalpine "lid" and the European cratonic margin, with the Helvetic system (European margin) acting as the "floor" of the wedge. We presume the Penninic wedge is driven by the buoyant rise of subducted crust no longer able to remain attached to the descending slab. If so, emplacement of the Pennine wedge could have occurred mainly after Adria was juxtaposed against cratonic Europe.

Thermochronometry across the Austroalpine-Pennine boundary, Central Alps, Switzerland: Orogen-perpendicular normal fault slip on a major ‘overthrust’ and its implications for orogenesis

USGS Publications Warehouse

Price, Jason B.; Wernicke, Brian P.; Cosca, Michael A.; Farley, Kenneth A.

2018-01-01

Fifty‐one new and 309 published thermochronometric ages (nine systems with closure temperatures ranging from ~450 to 70°C) from the Graubünden region of the Central Alps demonstrate that a pronounced thermal mismatch between the Austroalpine allochthon (Alpine “orogenic lid”) and the Pennine zone persisted until at least 29 Ma and, allowably, until circa 18 Ma. The observed mismatch supports previous suggestions that the famous “overthrust” between the Austroalpine allochthon and the Pennine zone, historically regarded as primarily an Eocene top‐north thrust fault, is in fact primarily an Oligocene‐Miocene normal fault that has a minimum of 60 km of displacement with top‐south or top‐southeast sense of shear. Two hallmarks of Alpine geology, deposition of the foredeep Molasse and emplacement of the Helvetic nappes, appear to be coeval, peripheral manifestations of crustal thickening via the interposition of the Pennine zone as a northward intruding wedge between the Austroalpine “lid” and the European cratonic margin, with the Helvetic system (European margin) acting as the “floor” of the wedge. We presume the Penninic wedge is driven by the buoyant rise of subducted crust no longer able to remain attached to the descending slab. If so, emplacement of the Pennine wedge could have occurred mainly after Adria was juxtaposed against cratonic Europe.

Dissolved Gases in Seawater and Sediments (Paper 7R0315)

NASA Astrophysics Data System (ADS)

Key, R. M.

1987-07-01

Certainly the most controversial results derived from the study of any dissolved gas concerned oxygen utilization rates in the North Atlantic. Jenkins (1982) estimated a net oxy-gen utilization rate (OUR) for the Beta triangle region of the North Atlantic (apices 26.5°N x 38.5°W, 32.5°N x 30.0°W, and 22.5°N x 28.5°W) of 5.7 moles of oxygen consumed m-2 yr-1 for the zone below 100m. He assumed that the oxygen distribution below the euphotic zone was stationary and steady state and therfore that the in situ oxygen consumption must be balanced by physical transport of oxygen into the area. His estimates were based on measured distributions of dissolved oxygen and the tracers 3He and 3H and a simple model which assumed lateral advection was small. The derived value or OUR was several times higher that previous estimates based on 14C and 15N incubation techniques. The OUR requires a downward flux of carbon from the photic zone of approximately 50 gCm-2yr-1 , which is again much higher that previous results. Jenkins and Goldman (1985) amplified the arguments in a study of seasonal oxygen cycling and primary production based on a ten year time series of measurements from the Panulirus station near Bermuda. Considering insolation, heat budgets and 3He/3H data they estimated a vertically integrated oxygen production rate of 5 Mm-2yr-1 and a subsequent new production of 50 gCm-2yr-1. The results were supported by calculations based on a second order turbulence closure model (Klein and Coste, 1984). These results have been challenged primarily on the basis of the spatial variability of the phenomenon!. Whatever the final outcome Jenkins has clearly demonstrated that the time has come to take a fresh look at oxygen utilization rates and primary productivity given the tools and modelling capabilities now at hand. The TTO data set will go a long way toward providing the necessary data set for the North Atlantic when the analyses are complete. Other studies have dealt with the photooxidative daylight loss of oxygen from near-surface tropical waters (Gieskes and Kraay, 1982), isotopic fractionation between fresh and seawater and the atmosphere (Benson and Krause, 1984) , edge effects on chemistry in the 02 minimum zone (Mullins et al., 1985), and the relationship between oxygen and other biogeochemical properties (Pak, 1984; Blizard and Pak, 1984; Lewitus and Broenkow, 1985).

The Peru Margin as an Authigenic Mineral Factory, Evidence From Surface Sediments and Oceanography

NASA Astrophysics Data System (ADS)

Dean, W. E.; Arthur, M. A.

2004-12-01

Characteristics of sediments deposited within an intense oxygen-minimum zone (OMZ) on the Peru continental margin were mapped by submersible, and studied in samples collected in deck-deployed box cores and submersible push cores on two east-west transects over water depths of 75 to 1000 m at 12 degrees and 13.5 degrees S. On the basis of sampling of the top 1-2 cm of available cores, three main belts of sediments were identified in each transect with increasing depth: 1) organic-carbon (OC)-rich muds; 2) authigenic phosphatic mineral crusts; and 3) glaucony facies. These facies patterns are primarily controlled by redox conditions and strength of bottom currents. OC-rich sediments on the 12-degree transect were mainly located on the outer shelf and upper slope (150-350 m), but they occurred in much shallower water (ca. 100 m) on the 13.5-degree transect. The organic matter is almost entirely marine, resulting from very high primary productivity. The OC concentrations are highest (up to 18%) in sediments where intermediate water masses with low dissolved oxygen concentrations (less than 5 micromoles/kg) impinge on the slope at water depths between 75 and 450 m. The region between 175 and 350 m depth is characterized by bedforms stabilized by bacterial mats, extensive authigenic mineral crusts, and (or) thick organic flocs. Currents as high as 30 cm/sec were measured over that depth interval. Current-resuspension of surficial organic matter, activity of organisms, and transport to and from more oxygenated zones contribute to greater oxidation and poorer preservation of organic matter than occur under oxygen-deficient conditions. Phosphate-rich sediments occurred at depths of about 300 to 550 m on both transects. Nodular crusts cemented by carbonate-fluorapatite (CFA; phosphorite) or dolomite form within the OMZ. The crusts start by cementation of sediment near the sediment-water interface forming stiff but friable phosphatizes claystone "protocrusts". The protocrusts evolve into dense, dark phosphorite crusts, cemented breccias, and pavements. The degree of phosphatization and thickness of the phosphorite crusts depends on rates of sediment supply and strength and frequency of currents that re-expose crusts on the seafloor. Glaucony-rich surficial sediments, relatively undiluted by other components, mainly were found in deeper water on the 13.5 degree transect (750 m to at least 1067 m). These sediments consist almost entirely of sand-size glaucony pellets (aggregates of clay minerals with pelletoid shapes). These widespread glaucony sands possibly formed in situ and were then concentrated and reworked by strong currents that winnowed away the fine-grained matrix. Overall, sedimentation rate must be slow in order for the glaucony minerals to remain in contact with seawater, which is the source of cations during growth. The close association of glaucony and phosphorite indicates that there is a delicate balance between slightly oxidizing and slightly reducing conditions at the base of the OMZ- slightly reducing to mobilize iron and phosphate, and slightly oxidizing to form glaucony.

Bottom trawling and oxygen minimum zone influences on continental slope benthic community structure off Vancouver Island (NE Pacific)

NASA Astrophysics Data System (ADS)

De Leo, Fabio C.; Gauthier, Maéva; Nephin, Jessica; Mihály, Steven; Juniper, S. Kim

2017-03-01

Understanding responses of benthic ecosystems to cumulative impacts of natural stressors, long-term ocean change and increasing resource exploitation is an emerging area of interest for marine ecologists and environmental managers. Few, if any, studies have quantitatively addressed cumulative effects in the deep sea. We report here on a study from the continental slope off Vancouver Island (Canada) in the northeast Pacific Ocean, where the Oxygen Minimum Zone impinges on seabed habitats that are subjected to widespread bottom trawling, primarily by the fishery for thornyhead (Sebastolobus ssp.). We examined how the benthic megafauna in this area was influenced by varying levels of dissolved oxygen and trawling activity, along a depth gradient that was also likely to shape community composition. Continuous video and sonar records from two ROV surveys (50 linear km total; depth range 300-1400 m) respectively provided data on faunal attributes (composition, abundance and diversity) and the frequency of trawl door marks on the seabed. Faunal and trawl data were compiled in a geo-referenced database along with corresponding dissolved oxygen data, and pooled into 500 m segments for statistical analysis. Trawl mark occurrence peaked between 500 and 1100 m, corresponding to areas of slope subjected to hypoxia (<1.4 ml l-1) and severe hypoxia (<0.5 ml l-1). A combined total of 266,251 megafauna organisms from 87 taxa were enumerated in the two transects. Significant megafaunal assemblages according to depth, trawling intensity and bottom water dissolved oxygen concentration were identified by PERMANOVA analyses, with characterizing taxa identified for all three factors. Depth, dissolved oxygen and trawl mark density accounted for 21% to 52% of the variability in benthic community structure according to multiple regression (DISTLM) models. Species richness was highest at intermediate depths and in areas subject to intermediate levels of trawling, and higher under hypoxia than under severe hypoxia. These statistically significant trends demonstrate that the structuring influences of bottom trawling on deep-sea benthic communities can be observed even where communities are being shaped by strong environmental gradients.

Metabolic suppression during protracted exposure to hypoxia in the jumbo squid, Dosidicus gigas, living in an oxygen minimum zone.

PubMed

Seibel, Brad A; Häfker, N Sören; Trübenbach, Katja; Zhang, Jing; Tessier, Shannon N; Pörtner, Hans-Otto; Rosa, Rui; Storey, Kenneth B

2014-07-15

The jumbo squid, Dosidicus gigas, can survive extended forays into the oxygen minimum zone (OMZ) of the Eastern Pacific Ocean. Previous studies have demonstrated reduced oxygen consumption and a limited anaerobic contribution to ATP production, suggesting the capacity for substantial metabolic suppression during hypoxic exposure. Here, we provide a more complete description of energy metabolism and explore the expression of proteins indicative of transcriptional and translational arrest that may contribute to metabolic suppression. We demonstrate a suppression of total ATP demand under hypoxic conditions (1% oxygen, PO2 =0.8 kPa) in both juveniles (52%) and adults (35%) of the jumbo squid. Oxygen consumption rates are reduced to 20% under hypoxia relative to air-saturated controls. Concentrations of arginine phosphate (Arg-P) and ATP declined initially, reaching a new steady state (~30% of controls) after the first hour of hypoxic exposure. Octopine began accumulating after the first hour of hypoxic exposure, once Arg-P breakdown resulted in sufficient free arginine for substrate. Octopine reached levels near 30 mmol g(-1) after 3.4 h of hypoxic exposure. Succinate did increase through hypoxia but contributed minimally to total ATP production. Glycogenolysis in mantle muscle presumably serves to maintain muscle functionality and balance energetics during hypoxia. We provide evidence that post-translational modifications on histone proteins and translation factors serve as a primary means of energy conservation and that select components of the stress response are altered in hypoxic squids. Reduced ATP consumption under hypoxia serves to maintain ATP levels, prolong fuel store use and minimize the accumulation of acidic intermediates of anaerobic ATP-generating pathways during prolonged diel forays into the OMZ. Metabolic suppression likely limits active, daytime foraging at depth in the core of the OMZ, but confers an energetic advantage over competitors that must remain in warm, oxygenated surface waters. Moreover, the capacity for metabolic suppression provides habitat flexibility as OMZs expand as a result of climate change. © 2014. Published by The Company of Biologists Ltd.

The Effect of Changes in the Hadley Circulation on Oceanic Oxygen Minimum Zones

NASA Astrophysics Data System (ADS)

De La Cruz Tello, G.; Ummenhofer, C.; Karnauskas, K. B.

2014-12-01

Recent research argued that the Hadley circulation (HC) is composed of three regional cells located at the eastern edges of the ocean basins, rather than a single, globe-encircling cell as the classic textbook view suggests. The HC is expected to expand in concert with global warming, which means that the dry regions beneath the descending branches of the HC are projected to become even drier. Changes in the HC are thus likely to impact freshwater resources on land, as well as the underlying ocean in the subtropics. The eastern edges of ocean basins are characterized by oxygen minimum zones (OMZs), which are regions of very low oxygen concentrations. They affect marine life, as many animals cannot handle the stress caused by such conditions. OMZs have expanded and shoaled in the last 50 years, and they are expected to continue to do so as global climate changes. The purpose of this research is to find links between the projected changes in OMZs and the HC. The National Center for Atmospheric Research (NCAR) Community Earth System Model 1.0 (CESM), Representative Concentration Pathways 8.5 (RCP8.5) experiment with a resolution of 0.9 by 1.25 degrees, which formed part of the Coupled Model Intercomparison Project phase 5 (CMIP5), was used for this analysis. Meridional winds and oceanic oxygen concentrations were the primarily analyzed variables. Latitudinal ocean oxygen slices demonstrate the OMZs' location along the eastern edges of ocean basins. Meridional winds overlayed with oxygen concentration are consistent with the idea that surface meridional 'Hadleywise flow' (i.e., towards the equator at the surface and towards the poles aloft) and OMZs are linked through changes in upwelling. Area-averaged time series spanning the historical period through to the end of the 21st century with RCP8.5 confirm that future changes in OMZs and the HC may be connected. Further research could lead to improved understanding of the factors that drive changes in both, which could help anticipate and mitigate the consequences discussed previously.

Glacial-Holocene variability in pelagic denitrification and OMZ intensity along the NW Mexican Margin

NASA Astrophysics Data System (ADS)

Ontiveros Cuadras, J. F.; Thunell, R.; Ruiz-Fernandez, A. C.; Machain-Castillo, M. L.; Tappa, E.

2017-12-01

Denitrification of fixed nitrogen represents a substantial loss of bioavailable nitrogen from the ocean, thus playing a major role in the global nitrogen cycle. Water-column (pelagic) denitrification occurs mostly in the oxygen minimum zones (OMZs), which are situated beneath coastal upwelling areas that are characterized by high settling fluxes of organic detritus and high rates of oxygen utilization from remineralization. Our study uses biogenic components (total organic carbon and opal) and δ15N values of sediments from the NW Mexican Margin to reconstruct variations in denitrification and strength of the OMZ in the eastern tropical North Pacific (ETNP) for the last 36,000 years. During the last glacial period (LGM, 23-18 kyr) the associations between relatively low δ15N values (7-8‰) and low TOC (2-4%) and opal (1-4%) content indicates reduced denitrification due to reduced upwelling and decreased flux of organic matter through the OMZ. This was followed by abrupt acceleration of water-column denitrification (δ15N, 7-10‰) and the strengthening of the OMZ during the latter half of Heinrich Stadial 1 (HS1; 18-14.7 kyr). However, the biogenic component of sediments deposited during HS1 do not increase appreciably, suggesting that the increase in denitrification was not driven by an increase in productivity. Furthermore, the increase in δ15N precedes the deglacial decrease in planktonic foraminiferal δ18O which mostly occurs during the Bolling Alerod (14.7-12.9 kyr). This suggests that the increase in denitrification was not a response to surface warming. Rather, we attribute the rapid increase in denitrification during HS1 to reduced ventilation of the ETNP OMZ. Following the peak in denitrification at the end of HS1, we observe a small but steady decline in δ15N over the last 15 kyr. Higher TOC in Holocene sediments relative to glacial sediments suggests that increased productivity has played a role in maintaining a strong OMZ throughout the Holocene.

Acoustic Observation of Living Organisms Reveals the Upper Limit of the Oxygen Minimum Zone

PubMed Central

Bertrand, Arnaud; Ballón, Michael; Chaigneau, Alexis

2010-01-01

Background Oxygen minimum zones (OMZs) are expanding in the World Ocean as a result of climate change and direct anthropogenic influence. OMZ expansion greatly affects biogeochemical processes and marine life, especially by constraining the vertical habitat of most marine organisms. Currently, monitoring the variability of the upper limit of the OMZs relies on time intensive sampling protocols, causing poor spatial resolution. Methodology/Principal Findings Using routine underwater acoustic observations of the vertical distribution of marine organisms, we propose a new method that allows determination of the upper limit of the OMZ with a high precision. Applied in the eastern South-Pacific, this original sampling technique provides high-resolution information on the depth of the upper OMZ allowing documentation of mesoscale and submesoscale features (e.g., eddies and filaments) that structure the upper ocean and the marine ecosystems. We also use this information to estimate the habitable volume for the world's most exploited fish, the Peruvian anchovy (Engraulis ringens). Conclusions/Significance This opportunistic method could be implemented on any vessel geared with multi-frequency echosounders to perform comprehensive high-resolution monitoring of the upper limit of the OMZ. Our approach is a novel way of studying the impact of physical processes on marine life and extracting valid information about the pelagic habitat and its spatial structure, a crucial aspect of Ecosystem-based Fisheries Management in the current context of climate change. PMID:20442791

Origin and fate of methane in the Eastern Tropical North Pacific oxygen minimum zone.

PubMed

Chronopoulou, Panagiota-Myrsini; Shelley, Felicity; Pritchard, William J; Maanoja, Susanna T; Trimmer, Mark

2017-06-01

Oxygen minimum zones (OMZs) contain the largest pools of oceanic methane but its origin and fate are poorly understood. High-resolution (<15 m) water column profiles revealed a 300 m thick layer of elevated methane (20-105 nM) in the anoxic core of the largest OMZ, the Eastern Tropical North Pacific. Sediment core incubations identified a clear benthic methane source where the OMZ meets the continental shelf, between 350 and 650 m, with the flux reflecting the concentration of methane in the overlying anoxic water. Further incubations characterised a methanogenic potential in the presence of both porewater sulphate and nitrate of up to 88 nmol g -1 day -1 in the sediment surface layer. In these methane-producing sediments, the majority (85%) of methyl coenzyme M reductase alpha subunit (mcrA) gene sequences clustered with Methanosarcinaceae (⩾96% similarity to Methanococcoides sp.), a family capable of performing non-competitive methanogenesis. Incubations with 13 C-CH 4 showed potential for both aerobic and anaerobic methane oxidation in the waters within and above the OMZ. Both aerobic and anaerobic methane oxidation is corroborated by the presence of particulate methane monooxygenase (pmoA) gene sequences, related to type I methanotrophs and the lineage of Candidatus Methylomirabilis oxyfera, known to perform nitrite-dependent anaerobic methane oxidation (N-DAMO), respectively.

Origin and fate of methane in the Eastern Tropical North Pacific oxygen minimum zone

PubMed Central

Chronopoulou, Panagiota-Myrsini; Shelley, Felicity; Pritchard, William J; Maanoja, Susanna T; Trimmer, Mark

2017-01-01

Oxygen minimum zones (OMZs) contain the largest pools of oceanic methane but its origin and fate are poorly understood. High-resolution (<15 m) water column profiles revealed a 300 m thick layer of elevated methane (20–105 nM) in the anoxic core of the largest OMZ, the Eastern Tropical North Pacific. Sediment core incubations identified a clear benthic methane source where the OMZ meets the continental shelf, between 350 and 650 m, with the flux reflecting the concentration of methane in the overlying anoxic water. Further incubations characterised a methanogenic potential in the presence of both porewater sulphate and nitrate of up to 88 nmol g−1day−1 in the sediment surface layer. In these methane-producing sediments, the majority (85%) of methyl coenzyme M reductase alpha subunit (mcrA) gene sequences clustered with Methanosarcinaceae (⩾96% similarity to Methanococcoides sp.), a family capable of performing non-competitive methanogenesis. Incubations with 13C-CH4 showed potential for both aerobic and anaerobic methane oxidation in the waters within and above the OMZ. Both aerobic and anaerobic methane oxidation is corroborated by the presence of particulate methane monooxygenase (pmoA) gene sequences, related to type I methanotrophs and the lineage of Candidatus Methylomirabilis oxyfera, known to perform nitrite-dependent anaerobic methane oxidation (N-DAMO), respectively. PMID:28244978

Protist communities in a marine oxygen minimum zone off Costa Rica by 454 pyrosequencing

NASA Astrophysics Data System (ADS)

Jing, H.; Rocke, E.; Kong, L.; Xia, X.; Liu, H.; Landry, M. R.

2015-08-01

Marine planktonic protists, including microalgae and protistan grazers, are an important contributor to global primary production and carbon and mineral cycles, however, little is known about their population shifts along the oxic-anoxic gradient in the water column. We used 454 pyrosequencing of the 18S rRNA gene and gene transcripts to study the community composition of whole and active protists throughout a water column in the Costa Rica Dome, where a stable oxygen minimum zone (OMZ) exists at a depth of 400~700 m. A clear shift of protist composition from photosynthetic Dinoflagellates in the surface to potential parasitic Dinoflagellates and Ciliates in the deeper water was revealed along the vertical profile at both rRNA and rDNA levels. Those protist groups recovered only at the rDNA level represent either lysed aggregates sinking from the upper waters or potential hosts for parasitic groups. UPGMA clustering demonstrated that total and active protists in the anoxic core of OMZ (550 m) were distinct from those in other water depths. The reduced community diversity and presence of a parasitic/symbiotic trophic lifestyle in the OMZ, especially the anoxic core, suggests that OMZs can exert a selective pressure on protist communities. Such changes in community structure and a shift in trophic lifestyle could result in a modulation of the microbial loop and associated biogeochemical cycling.

Dynamics of the Indian-Ocean oxygen minimum zones

NASA Astrophysics Data System (ADS)

McCreary, Julian P.; Yu, Zuojun; Hood, Raleigh R.; Vinaychandran, P. N.; Furue, Ryo; Ishida, Akio; Richards, Kelvin J.

2013-05-01

In the Indian Ocean, mid-depth oxygen minimum zones (OMZs) occur in the Arabian Sea and the Bay of Bengal. The lower part of the Arabian-Sea OMZ (ASOMZ; below 400 m) intensifies northward across the basin; in contrast, its upper part (above 400 m) is located in the central/eastern basin, well east of the most productive regions along the western boundary. The Bay-of-Bengal OMZ (BBOMZ), although strong, is weaker than the ASOMZ. To investigate the processes that maintain the Indian-Ocean OMZs, we obtain a suite of solutions to a coupled biological/physical model. Its physical component is a variable-density, 61/2 >-layer model, in which each layer corresponds to a distinct dynamical regime or water-mass type. Its biological component has six compartments: nutrients, phytoplankton, zooplankton, two size classes of detritus, and oxygen. Because the model grid is non-eddy resolving (0.5°), the biological model also includes a parameterization of enhanced mixing based on the eddy kinetic energy derived from satellite observations. To explore further the impact of local processes on OMZs, we also obtain analytic solutions to a one-dimensional, simplified version of the biological model. Our control run is able to simulate basic features of the oxygen, nutrient, and phytoplankton fields throughout the Indian Ocean. The model OMZs result from a balance, or lack thereof, between a sink of oxygen by remineralization and subsurface oxygen sources due primarily to northward spreading of oxygenated water from the Southern Hemisphere, with a contribution from Persian-Gulf water in the northern Arabian Sea. The northward intensification of the lower ASOMZ results mostly from horizontal mixing since advection is weak in its depth range. The eastward shift of the upper ASOMZ is due primarily to enhanced advection and vertical eddy mixing in the western Arabian Sea, which spread oxygenated waters both horizontally and vertically. Advection carries small detritus from the western boundary into the central/eastern Arabian Sea, where it provides an additional source of remineralization that drives the ASOMZ to suboxic levels. The model BBOMZ is weaker than the ASOMZ because the Bay lacks a remote source of detritus from the western boundary. Although detritus has a prominent annual cycle, the model OMZs do not because there is not enough time for significant remineralization to occur.

Pathology of nodal marginal zone lymphomas.

PubMed

Pileri, Stefano; Ponzoni, Maurilio

Nodal marginal zone B cell lymphomas (NMZLs) are a rare group of lymphoid disorders part of the spectrum of marginal zone B-cell lymphomas, which encompass splenic marginal one B-cell lymphoma (SMZL) and extra nodal marginal zone of B-cell lymphoma (EMZL), often of MALT-type. Two clinicopathological forms of NMZL are recognized: adult-type and pediatric-type, respectively. NMZLs show overlapping features with other types of MZ, but distinctive features as well. In this review, we will focus on the salient distinguishing features of NMZL mostly under morphological/immunophenotypical/molecular perspectives in views of the recent acquisitions and forthcoming updated 2016 WHO classification of lymphoid malignancies. Copyright © 2016 Elsevier Ltd. All rights reserved.

14 CFR 25.1443 - Minimum mass flow of supplemental oxygen.

Code of Federal Regulations, 2013 CFR

2013-01-01

... 14 Aeronautics and Space 1 2013-01-01 2013-01-01 false Minimum mass flow of supplemental oxygen... § 25.1443 Minimum mass flow of supplemental oxygen. (a) If continuous flow equipment is installed for use by flight crewmembers, the minimum mass flow of supplemental oxygen required for each crewmember...

14 CFR 25.1443 - Minimum mass flow of supplemental oxygen.

Code of Federal Regulations, 2014 CFR

2014-01-01

... 14 Aeronautics and Space 1 2014-01-01 2014-01-01 false Minimum mass flow of supplemental oxygen... § 25.1443 Minimum mass flow of supplemental oxygen. (a) If continuous flow equipment is installed for use by flight crewmembers, the minimum mass flow of supplemental oxygen required for each crewmember...

14 CFR 25.1443 - Minimum mass flow of supplemental oxygen.

Code of Federal Regulations, 2012 CFR

2012-01-01

... 14 Aeronautics and Space 1 2012-01-01 2012-01-01 false Minimum mass flow of supplemental oxygen... § 25.1443 Minimum mass flow of supplemental oxygen. (a) If continuous flow equipment is installed for use by flight crewmembers, the minimum mass flow of supplemental oxygen required for each crewmember...

14 CFR 25.1443 - Minimum mass flow of supplemental oxygen.

Code of Federal Regulations, 2011 CFR

2011-01-01

... 14 Aeronautics and Space 1 2011-01-01 2011-01-01 false Minimum mass flow of supplemental oxygen... § 25.1443 Minimum mass flow of supplemental oxygen. (a) If continuous flow equipment is installed for use by flight crewmembers, the minimum mass flow of supplemental oxygen required for each crewmember...

The effect of Sequoyah Nuclear Plant on dissolved oxygen in Chickamauga Reservoir

DOE Office of Scientific and Technical Information (OSTI.GOV)

Butkus, S.R.; Shiao, M.C.; Yeager, B.L.

1990-09-01

During the summer of 1985, the Tennessee Division of Water Pollution Control and the Tennessee Wildlife Resources Agency measured dissolved oxygen (DO) concentrations downstream from the Sequoyah Nuclear Plant (SQN) discharge mixing zone that were below the state criterion for DO. The Tennessee General Water Quality Criteria'' specifies that DO should be a minimum of 5.0 mg/l measured at a depth of 5 feet for the protection of fish and aquatic life. The Tennessee Valley Authority developed the present study to answer general concerns about reservoir conditions and potential for adverse effects on aquatic biota. Four objectives were defined formore » this study: (1) to better define the extent and duration of the redistribution of DO in the reservoir, (2) to better understand DO dynamics within the mixing zone, (3) to determine whether DO is being lost (or added) as the condenser cooling water passes through the plant, and (4) to evaluate the potential for impact on aquatic life in the reservoir.« less

Methylation patterns in marginal zone lymphoma.

PubMed

Arribas, Alberto J; Bertoni, Francesco

Promoter DNA methylation is a major regulator of gene expression and transcription. The identification of methylation changes is important for understanding disease pathogenesis, for identifying prognostic markers and can drive novel therapeutic approaches. In this review we summarize the current knowledge regarding DNA methylation in MALT lymphoma, splenic marginal zone lymphoma, nodal marginal zone lymphoma. Despite important differences in the study design for different publications and the existence of a sole large and genome-wide methylation study for splenic marginal zone lymphoma, it is clear that DNA methylation plays an important role in marginal zone lymphomas, in which it contributes to the inactivation of tumor suppressors but also to the expression of genes sustaining tumor cell survival and proliferation. Existing preclinical data provide the rationale to target the methylation machinery in these disorders. Copyright © 2016 Elsevier Ltd. All rights reserved.

Modeling sulfate reduction in methane hydrate-bearing continental margin sediments: Does a sulfate-methane transition require anaerobic oxidation of methane?

USGS Publications Warehouse

Malinverno, A.; Pohlman, J.W.

2011-01-01

The sulfate-methane transition (SMT), a biogeochemical zone where sulfate and methane are metabolized, is commonly observed at shallow depths (1-30 mbsf) in methane-bearing marine sediments. Two processes consume sulfate at and above the SMT, anaerobic oxidation of methane (AOM) and organoclastic sulfate reduction (OSR). Differentiating the relative contribution of each process is critical to estimate methane flux into the SMT, which, in turn, is necessary to predict deeper occurrences of gas hydrates in continental margin sediments. To evaluate the relative importance of these two sulfate reduction pathways, we developed a diagenetic model to compute the pore water concentrations of sulfate, methane, and dissolved inorganic carbon (DIC). By separately tracking DIC containing 12C and 13C, the model also computes ??13C-DIC values. The model reproduces common observations from methane-rich sediments: a well-defined SMT with no methane above and no sulfate below and a ??13C-DIC minimum at the SMT. The model also highlights the role of upward diffusing 13C-enriched DIC in contributing to the carbon isotope mass balance of DIC. A combination of OSR and AOM, each consuming similar amounts of sulfate, matches observations from Site U1325 (Integrated Ocean Drilling Program Expedition 311, northern Cascadia margin). Without AOM, methane diffuses above the SMT, which contradicts existing field data. The modeling results are generalized with a dimensional analysis to the range of SMT depths and sedimentation rates typical of continental margins. The modeling shows that AOM must be active to establish an SMT wherein methane is quantitatively consumed and the ??13C-DIC minimum occurs. The presence of an SMT generally requires active AOM. Copyright 2011 by the American Geophysical Union.

Iodine I 131 Tositumomab and Fludarabine Phosphate in Treating Older Patients Who Are Undergoing an Autologous or Syngeneic Stem Cell Transplant for Relapsed or Refractory Non-Hodgkin's Lymphoma

ClinicalTrials.gov

2014-08-04

Extranodal Marginal Zone B-cell Lymphoma of Mucosa-associated Lymphoid Tissue; Nodal Marginal Zone B-cell Lymphoma; Recurrent Adult Burkitt Lymphoma; Recurrent Adult Diffuse Large Cell Lymphoma; Recurrent Adult Diffuse Mixed Cell Lymphoma; Recurrent Adult Diffuse Small Cleaved Cell Lymphoma; Recurrent Adult Immunoblastic Large Cell Lymphoma; Recurrent Adult Lymphoblastic Lymphoma; Recurrent Grade 1 Follicular Lymphoma; Recurrent Grade 2 Follicular Lymphoma; Recurrent Grade 3 Follicular Lymphoma; Recurrent Mantle Cell Lymphoma; Recurrent Marginal Zone Lymphoma; Splenic Marginal Zone Lymphoma; Waldenström Macroglobulinemia

Interleukin-12 in Treating Patients With Previously Treated Non-Hodgkin's Lymphoma or Hodgkin's Disease

ClinicalTrials.gov

2015-04-14

Extranodal Marginal Zone B-cell Lymphoma of Mucosa-associated Lymphoid Tissue; Nodal Marginal Zone B-cell Lymphoma; Recurrent Adult Diffuse Large Cell Lymphoma; Recurrent Adult Diffuse Mixed Cell Lymphoma; Recurrent Adult Diffuse Small Cleaved Cell Lymphoma; Recurrent Adult Hodgkin Lymphoma; Recurrent Adult Immunoblastic Large Cell Lymphoma; Recurrent Cutaneous T-cell Non-Hodgkin Lymphoma; Recurrent Grade 1 Follicular Lymphoma; Recurrent Grade 2 Follicular Lymphoma; Recurrent Grade 3 Follicular Lymphoma; Recurrent Mantle Cell Lymphoma; Recurrent Marginal Zone Lymphoma; Recurrent Mycosis Fungoides/Sezary Syndrome; Recurrent Small Lymphocytic Lymphoma; Splenic Marginal Zone Lymphoma; Waldenström Macroglobulinemia

CCI-779 in Treating Patients With Recurrent or Refractory B-Cell Non-Hodgkin's Lymphoma or Chronic Lymphocytic Leukemia

ClinicalTrials.gov

2014-05-07

B-cell Chronic Lymphocytic Leukemia; Extranodal Marginal Zone B-cell Lymphoma of Mucosa-associated Lymphoid Tissue; Malignant Neoplasm; Nodal Marginal Zone B-cell Lymphoma; Recurrent Adult Burkitt Lymphoma; Recurrent Adult Diffuse Large Cell Lymphoma; Recurrent Adult Diffuse Mixed Cell Lymphoma; Recurrent Adult Diffuse Small Cleaved Cell Lymphoma; Recurrent Adult Immunoblastic Large Cell Lymphoma; Recurrent Adult Lymphoblastic Lymphoma; Recurrent Grade 1 Follicular Lymphoma; Recurrent Grade 2 Follicular Lymphoma; Recurrent Grade 3 Follicular Lymphoma; Recurrent Marginal Zone Lymphoma; Recurrent Small Lymphocytic Lymphoma; Refractory Chronic Lymphocytic Leukemia; Splenic Marginal Zone Lymphoma; Waldenström Macroglobulinemia

Dynamics of Productivity-Related Oxygen Minimum Zone along the Shirshov Ridge, Western Bering Sea, during the Last Glacial Termination

NASA Astrophysics Data System (ADS)

Ovsepyan, E.; Ivanova, E. V.; Tiedemann, R.

2017-12-01

Seasonally sea-ice covered Bering Sea is known to be a sensitive region to study rapid climatic oscillations. Based on benthic (BF) and planktic (PF) foraminiferal data from two sediment cores SO201-2-85KL (85KL, w.d. 968 m) and SO201-2-77KL (77KL, w.d. 2163 m) we reconstruct variations in intensity of oxygen minimum zone (OMZ) and its relation to sea-surface bioproductivity in the central and southern parts of the Shirshov Ridge, western Bering Sea, during the Termination I. A prevalence of suboxic BF group (Kaiho, 1994) in both cores mirrors moderately oxygenated intermediate and deep waters during LGM-Heinrich I interval. Rapid increase in percentages of dysoxic group is registered in the core 77KL at the onset of Bølling/Allerød. This implies that relatively low-oxygen conditions developed at 2 km water depths in the southwestern Bering Sea, but occurrence (20-30%) of suboxic group suggests that oxygen depletion was not dramatic. Simultaneous spikes of high-productivity species point to a bioproductivity rise above the southern part of the ridge. Increase in bioproductivity and decrease in oxygen content are detected 0.9 kyr later above the central part of Shirshov Ridge than above the southern one. This delay might reflect a gradual sea ice retreat from station 77 KL to 85KL during the global warming and sea level rise. Moderate bottom-water oxygenation is suggested for the intermediate depths of 1 km whereas no changes in relative oxygen content are found at 2 km below sea level during the Younger Dryas. Concurrent decrease in bioproductivity is reconstructed from BF records from the core 85KL. However, presence of high-productivity species and elevated BF accumulation rates in the core 77KL point to higher organic matter flux to the sea floor in the southern part of the ridge at the end of Younger Dryas. For the Early Holocene, bioproductivity rise and oxygen depletion in the intermediate waters are inferred from BF data. Strong dominance of dysoxic group in the 85KL indicates that oxygen content at the intermediate depths was much lower during the Early Holocene than during the Bølling/Allerød. The results provide evidence for complex development of OMZ in the western Bering Sea during the Termination I. They also demonstrate high potential to extend such studies to the North Pacific realm.

Indian Monsoon and denitrification change in the Laxmi Basin (IODP Exp. 355 Site U1456) of the Eastern Arabian Sea during the last 800 kyrs

NASA Astrophysics Data System (ADS)

Kim, J. E.; Khim, B. K.; Ikehara, M.; Lee, J.

2017-12-01

The Arabian Sea is a famous site for the basin-wide denitrification in the globe. The Western Arabian Sea has been acknowledged by its upwelling-induced denitrification related to the Indian Monsoon system (Altabet et al., 1999). It was recently reported that the denitrification in the Eastern Arabian Sea (IODP Exp. 355 Site U1456) has been persistent and consistent during the mid-Pleistocene as reflected in the bulk sediment δ15N values (Tripathi et al., 2017). Based on the age model reconstructed by δ18O stratigraphy of planktonic foraminifera (Globigerinoides ruber) together with shipboard biostratigraphic and paleomagnetic data at Site U1456 drilled in the Laxmi Basin of the Eastern Arabian Sea, the glacial-interglacial fluctuations of denitrification in association with the development of oxygen minimum zone (OMZ) were resolved in the context of Indian Monsoon activity. One of striking features in the Eastern Arabian Sea is that the δ15N values of bulk sediment show clear and consistent denitrification with minimum δ15N values exceeding 6‰ even during glacial periods, when its western counterpart experienced a temporal collapse of OMZ and denitrification. The Eastern Arabian Sea is fed not only by the upwelling-induced productivity in the western margin during the summer monsoon but also by the high productivity during the winter monsoon, both of which maintain the increased productivity affecting the OMZ through the consumption of dissolved oxygen by the degradation of sinking organic particles. The Eastern Arabian Sea is further influenced by the clockwise surface currents, intermediate water ventilation change by the blockage of Antarctic Intermediate Water, limited inflow from the Red Sea/Persian Gulf, and the freshwater salinity stratification due to nearby riverine discharges, all of which make the denitrification process more complicated than the Western Arabian Sea. Nonetheless, the glacial-interglacial denitrification change in the Eastern Arabian Sea is interpreted to be linked strongly with the intensity of Indian Monsoon.

Facets of diazotrophy in the oxygen minimum zone waters off Peru

PubMed Central

Loescher, Carolin R; Großkopf, Tobias; Desai, Falguni D; Gill, Diana; Schunck, Harald; Croot, Peter L; Schlosser, Christian; Neulinger, Sven C; Pinnow, Nicole; Lavik, Gaute; Kuypers, Marcel M M; LaRoche, Julie; Schmitz, Ruth A

2014-01-01

Nitrogen fixation, the biological reduction of dinitrogen gas (N2) to ammonium (NH4+), is quantitatively the most important external source of new nitrogen (N) to the open ocean. Classically, the ecological niche of oceanic N2 fixers (diazotrophs) is ascribed to tropical oligotrophic surface waters, often depleted in fixed N, with a diazotrophic community dominated by cyanobacteria. Although this applies for large areas of the ocean, biogeochemical models and phylogenetic studies suggest that the oceanic diazotrophic niche may be much broader than previously considered, resulting in major implications for the global N-budget. Here, we report on the composition, distribution and abundance of nifH, the functional gene marker for N2 fixation. Our results show the presence of eight clades of diazotrophs in the oxygen minimum zone (OMZ) off Peru. Although proteobacterial clades dominated overall, two clusters affiliated to spirochaeta and archaea were identified. N2 fixation was detected within OMZ waters and was stimulated by the addition of organic carbon sources supporting the view that non-phototrophic diazotrophs were actively fixing dinitrogen. The observed co-occurrence of key functional genes for N2 fixation, nitrification, anammox and denitrification suggests that a close spatial coupling of N-input and N-loss processes exists in the OMZ off Peru. The wide distribution of diazotrophs throughout the water column adds to the emerging view that the habitat of marine diazotrophs can be extended to low oxygen/high nitrate areas. Furthermore, our statistical analysis suggests that NO2− and PO43− are the major factors affecting diazotrophic distribution throughout the OMZ. In view of the predicted increase in ocean deoxygenation resulting from global warming, our findings indicate that the importance of OMZs as niches for N2 fixation may increase in the future. PMID:24813564

Mesopelagic fishes of the Arabian Sea: distribution, abundance and diet of Chauliodus pammelas, Chauliodus sloani, Stomias affinis, and Stomias nebulosus

NASA Astrophysics Data System (ADS)

Butler, Mari; Bollens, Stephen M.; Burkhalter, Brenda; Madin, Laurence P.; Horgan, Erich

Four species of predatory fishes - Chauliodus pammelas, Chauliodus sloani, Stomias affinis and Stomias nebulosus - were collected on two cruises to the Arabian Sea during 1995. We present data on the abundances, horizontal and vertical distributions, and diet of these fishes. We also discuss briefly the importance of the oxygen minimum zone and predation on myctophid fishes to the ecology of these mesopelagic predators. Chauliodus pammelas and C. sloani appear to have only partially overlapping horizontal distributions in the Arabian Sea, with C. pammelas more common to the north and C. sloani more common to the south. Our data support previous results suggesting that diel vertical migration is the norm for these species, with smaller individuals usually nearer to the surface and larger individuals tending to stay deeper. In contrast to Chauliodus, Stomias affinis and S. nebulosus appear to have largely overlapping horizontal distributions in the Arabian Sea. However, they may have slightly different vertical distributions, with S. affinis living slightly shallower (especially at night) than S. nebulosus. All four species spend most of their time in the oxygen minimum zone, entering the surface oxygenated waters (100-150 m) only at night (if at all). The diets of C. pammelas, C. sloani, and S. affinis consisted mainly of lanternfishes, Myctophidae, and other fishes. In contrast, S. nebulosus, the smaller of the two Stomias species, ate mostly copepods and other crustaceans. This differential feeding may allow the two Stomias species to co-occur. Three of these four stomiids appear to play an important role in predation on myctophid fish populations in the Arabian Sea.

Ammonia-Oxidizing β-Proteobacteria from the Oxygen Minimum Zone off Northern Chile▿

PubMed Central

Molina, Verónica; Ulloa, Osvaldo; Farías, Laura; Urrutia, Homero; Ramírez, Salvador; Junier, Pilar; Witzel, Karl-Paul

2007-01-01

The composition of ammonia-oxidizing bacteria from the β-Proteobacteria subclass (βAOB) was studied in the surface and upper-oxycline oxic waters (2- to 50-m depth, ∼200 to 44 μM O2) and within the oxygen minimum zone (OMZ) suboxic waters (50- to 400-m depth, ≤10 μM O2) of the eastern South Pacific off northern Chile. This study was carried out through cloning and sequencing of genes coding for 16S rRNA and the ammonia monooxygenase enzyme active subunit (amoA). Sequences affiliated with Nitrosospira-like cluster 1 dominated the 16S rRNA gene clone libraries constructed from both oxic and suboxic waters. Cluster 1 consists exclusively of yet-uncultivated βAOB from marine environments. However, a single clone, out of 224 obtained from the OMZ, was found to belong to Nitrosospira lineage cluster 0. To our knowledge, cluster 0 sequences have been derived from βAOB isolated only from sand, soil, and freshwater environments. Sequences in clone libraries of the amoA gene from the surface and upper oxycline could be grouped in a marine subcluster, also containing no cultured representatives. In contrast, all 74 amoA sequences originating from the OMZ were either closely affiliated with cultured Nitrosospira spp. from clusters 0 and 2 or with other yet-uncultured βAOB from soil and an aerated-anoxic Orbal process waste treatment plant. Our results reveal the presence of Nitrosospira-like βAOB in both oxic and suboxic waters associated with the OMZ but with a clear community shift at the functional level (amoA) along the strong oxygen gradient. PMID:17416686

Facets of diazotrophy in the oxygen minimum zone waters off Peru.

PubMed

Loescher, Carolin R; Großkopf, Tobias; Desai, Falguni D; Gill, Diana; Schunck, Harald; Croot, Peter L; Schlosser, Christian; Neulinger, Sven C; Pinnow, Nicole; Lavik, Gaute; Kuypers, Marcel M M; LaRoche, Julie; Schmitz, Ruth A

2014-11-01

Nitrogen fixation, the biological reduction of dinitrogen gas (N2) to ammonium (NH4(+)), is quantitatively the most important external source of new nitrogen (N) to the open ocean. Classically, the ecological niche of oceanic N2 fixers (diazotrophs) is ascribed to tropical oligotrophic surface waters, often depleted in fixed N, with a diazotrophic community dominated by cyanobacteria. Although this applies for large areas of the ocean, biogeochemical models and phylogenetic studies suggest that the oceanic diazotrophic niche may be much broader than previously considered, resulting in major implications for the global N-budget. Here, we report on the composition, distribution and abundance of nifH, the functional gene marker for N2 fixation. Our results show the presence of eight clades of diazotrophs in the oxygen minimum zone (OMZ) off Peru. Although proteobacterial clades dominated overall, two clusters affiliated to spirochaeta and archaea were identified. N2 fixation was detected within OMZ waters and was stimulated by the addition of organic carbon sources supporting the view that non-phototrophic diazotrophs were actively fixing dinitrogen. The observed co-occurrence of key functional genes for N2 fixation, nitrification, anammox and denitrification suggests that a close spatial coupling of N-input and N-loss processes exists in the OMZ off Peru. The wide distribution of diazotrophs throughout the water column adds to the emerging view that the habitat of marine diazotrophs can be extended to low oxygen/high nitrate areas. Furthermore, our statistical analysis suggests that NO2(-) and PO4(3-) are the major factors affecting diazotrophic distribution throughout the OMZ. In view of the predicted increase in ocean deoxygenation resulting from global warming, our findings indicate that the importance of OMZs as niches for N2 fixation may increase in the future.

Oxygen at Nanomolar Levels Reversibly Suppresses Process Rates and Gene Expression in Anammox and Denitrification in the Oxygen Minimum Zone off Northern Chile

PubMed Central

Stewart, Frank J.; Thamdrup, Bo; De Brabandere, Loreto; Revsbech, Niels Peter; Ulloa, Osvaldo; Canfield, Don E.; DeLong, Edward F.

2014-01-01

ABSTRACT A major percentage (20 to 40%) of global marine fixed-nitrogen loss occurs in oxygen minimum zones (OMZs). Concentrations of O2 and the sensitivity of the anaerobic N2-producing processes of anammox and denitrification determine where this loss occurs. We studied experimentally how O2 at nanomolar levels affects anammox and denitrification rates and the transcription of nitrogen cycle genes in the anoxic OMZ off Chile. Rates of anammox and denitrification were reversibly suppressed, most likely at the enzyme level. Fifty percent inhibition of N2 and N2O production by denitrification was achieved at 205 and 297 nM O2, respectively, whereas anammox was 50% inhibited at 886 nM O2. Coupled metatranscriptomic analysis revealed that transcripts encoding nitrous oxide reductase (nosZ), nitrite reductase (nirS), and nitric oxide reductase (norB) decreased in relative abundance above 200 nM O2. This O2 concentration did not suppress the transcription of other dissimilatory nitrogen cycle genes, including nitrate reductase (narG), hydrazine oxidoreductase (hzo), and nitrite reductase (nirK). However, taxonomic characterization of transcripts suggested inhibition of narG transcription in gammaproteobacteria, whereas the transcription of anammox narG, whose gene product is likely used to oxidatively replenish electrons for carbon fixation, was not inhibited. The taxonomic composition of transcripts differed among denitrification enzymes, suggesting that distinct groups of microorganisms mediate different steps of denitrification. Sulfide addition (1 µM) did not affect anammox or O2 inhibition kinetics but strongly stimulated N2O production by denitrification. These results identify new O2 thresholds for delimiting marine nitrogen loss and highlight the utility of integrating biogeochemical and metatranscriptomic analyses. PMID:25352619

Ammonia-oxidizing beta-proteobacteria from the oxygen minimum zone off northern Chile.

PubMed

Molina, Verónica; Ulloa, Osvaldo; Farías, Laura; Urrutia, Homero; Ramírez, Salvador; Junier, Pilar; Witzel, Karl-Paul

2007-06-01

The composition of ammonia-oxidizing bacteria from the beta-Proteobacteria subclass (betaAOB) was studied in the surface and upper-oxycline oxic waters (2- to 50-m depth, approximately 200 to 44 microM O(2)) and within the oxygen minimum zone (OMZ) suboxic waters (50- to 400-m depth, < or =10 microM O(2)) of the eastern South Pacific off northern Chile. This study was carried out through cloning and sequencing of genes coding for 16S rRNA and the ammonia monooxygenase enzyme active subunit (amoA). Sequences affiliated with Nitrosospira-like cluster 1 dominated the 16S rRNA gene clone libraries constructed from both oxic and suboxic waters. Cluster 1 consists exclusively of yet-uncultivated betaAOB from marine environments. However, a single clone, out of 224 obtained from the OMZ, was found to belong to Nitrosospira lineage cluster 0. To our knowledge, cluster 0 sequences have been derived from betaAOB isolated only from sand, soil, and freshwater environments. Sequences in clone libraries of the amoA gene from the surface and upper oxycline could be grouped in a marine subcluster, also containing no cultured representatives. In contrast, all 74 amoA sequences originating from the OMZ were either closely affiliated with cultured Nitrosospira spp. from clusters 0 and 2 or with other yet-uncultured betaAOB from soil and an aerated-anoxic Orbal process waste treatment plant. Our results reveal the presence of Nitrosospira-like betaAOB in both oxic and suboxic waters associated with the OMZ but with a clear community shift at the functional level (amoA) along the strong oxygen gradient.

Bacterial diversity in the oxygen minimum zone of the eastern tropical South Pacific.

PubMed

Stevens, Heike; Ulloa, Osvaldo

2008-05-01

The structure and diversity of bacterial communities associated with the oxygen minimum zone (OMZ) of the eastern tropical South Pacific was studied through phylogenetic analysis. Clone libraries of 16S rRNA gene fragments were constructed using environmental DNA collected from the OMZ (60 m and 200 m), the sea surface (10 m), and the deep oxycline (450 m). At the class level, the majority of sequences affiliated to the gamma- (53.7%) and alpha-Proteobacteria (19.7%), and to the Bacteroidetes (11.2%). A vertical partitioning of the bacterial communities was observed, with main differences between the suboxic OMZ and the more oxygenated surface and deep oxycline waters. At the surface, the microbial community was predominantly characterized by SAR86, Loktanella and unclassified Flavobacteriaceae, whereas the deeper layer was dominated by Sulfitobacter and unclassified Alteromonadaceae. In the OMZ, major constituents affiliated to the marine SAR11 clade and to thiotrophic gamma-symbionts (25% of all sequences), a group not commonly found in pelagic waters. Sequences affiliating to the phylum Chloroflexi, to the AGG47 and SAR202 clades, to the delta-Proteobacteria, to the Acidobacteria, and to the 'anammox group' of the Planctomycetes were found exclusively in the OMZ. The bacterial richness in the OMZ was higher than in the oxic surface and deeper oxycline, as revealed by rarefaction analysis and the Chao1 richness estimator (surface: 45 +/- 8, deeper oxycline: 76 +/- 26; OMZ (60 m): 97 +/- 33, OMZ (200 m): 109 +/- 31). OMZ bacterial diversity indices (Fisher's: approximately 30 +/- 5, Shannon's: approximately 3.31, inverse Simpson's: approximately 20) were similar to those found in other pelagic marine environments. Thus, our results indicate a distinct and diverse bacterial community within the OMZ, with presumably novel and yet uncultivated bacterial lineages.

Similar potential ATP-P production and enzymatic activities in the microplankton community off Concepción (Chile) under oxic and suboxic conditions

NASA Astrophysics Data System (ADS)

González, Rodrigo R.; Gutiérrez, Marcelo H.; Quiñones, Renato A.

2007-11-01

The effects of the oxygen minimum zone on the metabolism of the heterotrophic microplankton community (0.22-100 μm) in the Humboldt Current System, as well as the factors controlling its biomass production, remain unknown. Here we compare the effect of four sources of dissolved organic carbon (glucose, oxaloacetate, glycine, leucine) on microbial biomass production (such as ATP-P) and the potential enzymatic activities involved in catabolic pathways under oxic and suboxic conditions. Our results show significant differences ( p < 0.05) in the ATP-P production when induced by the different substrates that are used as dissolved organic carbon herein. The induction of ATP-P production is enhanced from glucose < oxaloacetate < glycine < leucine. Nevertheless, for individual substrates, no significant differences were found between incubation under oxic and suboxic conditions except in the case of leucine. For this amino acid, the induction of ATP-P synthesis was higher under suboxic than oxic conditions. The data sets of all the substrates used showed greater potential ATP-P production under suboxic than oxic conditions. The results of the potential enzymatic activities suggest that malate dehydrogenase has the highest signal of NADH oxidization activity in the microbial assemblage. Furthermore, for all experiments, the malate dehydrogenase activity data set had a significant relationship with ATP-P production. These findings suggest that the microbial community inhabiting the oxygen minimum zone has the same or greater potential growth than the community inhabiting more oxygenated strata of the water column and that malate dehydrogenase is the activity that best represents the metabolic potential of the community.

Serpentinisation and fluid flow associated with a detachment fault in Tasna OCT, South-east Switzerland

NASA Astrophysics Data System (ADS)

Engström, A. V.; Skelton, A. D.

2003-04-01

The well-studied Iberia Abyssal Plain (ODP legs 149 and 173) is a non-volcanic passive margin where continental crust and oceanic crust are separated by a “mantle window” composed of serpentinised peridotites. The exhumation of the mantle at this transitional zone is under debate and several models involving detachment faulting, shear zones or magmatic intrusions have been proposed to explain the formation of the ocean-continent transition (OCT). The mechanical behaviour of serpentinite, with its low density, strength and permeability, and the timing of the serpentinisation process in relation to the exhumation, are crucial parameters in understanding non-volcanic rifting processes. Beneath Iberia Abyssal Plain, sampling is restricted to ocean ridges, the recovery is very poor and in addition, drillcores only give one-dimensional data, implicitly any data is not statistically well represented. However, there are several land analogues of past ocean-continent margins which give excellent opportunities to study the timing and evolution of fluids and serpentinisation in several dimensions. The Tasna OCT is a “mantle window” situated in the Swiss Alps displaying exhumed mantle (serpentinised peridotite) in contact with basement rocks or sediments. For this study several sampling profiles have been conducted across the mantle boundary. Field observations together with ignition experiments and thin section analyses indicate that the degree of serpentinisation is not continously increasing with depth as may be expected. In contrast, high serpentinite contents were recorded at the top of the mantle sequence as well as deeper down. The general pattern of serpentinisation shows “saw tooth” geometry as the content fluctuate from high to low and back to higher values again. This implies that the fluid flow has been channeled. Oxygen isotope studies from the Iberia margin (Skelton and Valley 2000) show deformation channeled fluid flow. Several heavily eroded sections in the Tasna OCT may very well correspond with the postulated shear zones in the Iberia margin localizing the fluid.

Impacts of hypoxia on the structure and processes in the pelagic community (zooplankton, macro-invertebrates and fish)

NASA Astrophysics Data System (ADS)

Ekau, W.; Auel, H.; Pörtner, H.-O.; Gilbert, D.

2009-05-01

Dissolved oxygen (DO) concentration in the water column is an environmental parameter that is crucial for the successful development of many pelagic organisms. Hypoxia tolerance and threshold values are species- and stage-specific and can vary enormously. While some fish species may suffer from oxygen values of less than 3 ml L-1 and show impact on growth, development and behaviour, other organisms such as euphausiids may survive DO levels as low as 0.1 ml L-1. A change in the average or the minimum or maximum DO in an area may have significant impacts on the survival of certain species and hence on the species composition in the ecosystem with consequent changes in trophic pathways and productivity. Evidence of the deleterious effects of oxygen depletion on species of the pelagic realm is scarce, particularly in terms of the effect of low oxygen on development, recruitment and patterns of migration and distribution. While planktonic organisms have to cope with different DOs and find adaptive mechanisms, nektonic species may avoid areas of inconvenient DO and develop adapted migrational strategies. Planktonic organisms may only be able to escape vertically, above or beneath the Oxygen Minimum Zone (OMZ). In shallow areas only the surface layer can serve as a refuge, in deep waters many organisms have developed vertical migration strategies to use, pass and cope with the OMZ. This paper elucidates the role of DO for different taxa in the pelagic realm and the consequences of low oxygen for foodweb structure and system productivity.

Giant Hydrogen Sulfide Plume in the Oxygen Minimum Zone off Peru Supports Chemolithoautotrophy

PubMed Central

Großkopf, Tobias; Kalvelage, Tim; Löscher, Carolin R.; Paulmier, Aurélien; Contreras, Sergio; Siegel, Herbert; Holtappels, Moritz; Rosenstiel, Philip; Schilhabel, Markus B.; Graco, Michelle; Schmitz, Ruth A.; Kuypers, Marcel M. M.; LaRoche, Julie

2013-01-01

In Eastern Boundary Upwelling Systems nutrient-rich waters are transported to the ocean surface, fuelling high photoautotrophic primary production. Subsequent heterotrophic decomposition of the produced biomass increases the oxygen-depletion at intermediate water depths, which can result in the formation of oxygen minimum zones (OMZ). OMZs can sporadically accumulate hydrogen sulfide (H2S), which is toxic to most multicellular organisms and has been implicated in massive fish kills. During a cruise to the OMZ off Peru in January 2009 we found a sulfidic plume in continental shelf waters, covering an area >5500 km2, which contained ∼2.2×104 tons of H2S. This was the first time that H2S was measured in the Peruvian OMZ and with ∼440 km3 the largest plume ever reported for oceanic waters. We assessed the phylogenetic and functional diversity of the inhabiting microbial community by high-throughput sequencing of DNA and RNA, while its metabolic activity was determined with rate measurements of carbon fixation and nitrogen transformation processes. The waters were dominated by several distinct γ-, δ- and ε-proteobacterial taxa associated with either sulfur oxidation or sulfate reduction. Our results suggest that these chemolithoautotrophic bacteria utilized several oxidants (oxygen, nitrate, nitrite, nitric oxide and nitrous oxide) to detoxify the sulfidic waters well below the oxic surface. The chemolithoautotrophic activity at our sampling site led to high rates of dark carbon fixation. Assuming that these chemolithoautotrophic rates were maintained throughout the sulfidic waters, they could be representing as much as ∼30% of the photoautotrophic carbon fixation. Postulated changes such as eutrophication and global warming, which lead to an expansion and intensification of OMZs, might also increase the frequency of sulfidic waters. We suggest that the chemolithoautotrophically fixed carbon may be involved in a negative feedback loop that could fuel further sulfate reduction and potentially stabilize the sulfidic OMZ waters. PMID:23990875

Giant hydrogen sulfide plume in the oxygen minimum zone off Peru supports chemolithoautotrophy.

PubMed

Schunck, Harald; Lavik, Gaute; Desai, Dhwani K; Großkopf, Tobias; Kalvelage, Tim; Löscher, Carolin R; Paulmier, Aurélien; Contreras, Sergio; Siegel, Herbert; Holtappels, Moritz; Rosenstiel, Philip; Schilhabel, Markus B; Graco, Michelle; Schmitz, Ruth A; Kuypers, Marcel M M; Laroche, Julie

2013-01-01

In Eastern Boundary Upwelling Systems nutrient-rich waters are transported to the ocean surface, fuelling high photoautotrophic primary production. Subsequent heterotrophic decomposition of the produced biomass increases the oxygen-depletion at intermediate water depths, which can result in the formation of oxygen minimum zones (OMZ). OMZs can sporadically accumulate hydrogen sulfide (H2S), which is toxic to most multicellular organisms and has been implicated in massive fish kills. During a cruise to the OMZ off Peru in January 2009 we found a sulfidic plume in continental shelf waters, covering an area >5500 km(2), which contained ∼2.2×10(4) tons of H2S. This was the first time that H2S was measured in the Peruvian OMZ and with ∼440 km(3) the largest plume ever reported for oceanic waters. We assessed the phylogenetic and functional diversity of the inhabiting microbial community by high-throughput sequencing of DNA and RNA, while its metabolic activity was determined with rate measurements of carbon fixation and nitrogen transformation processes. The waters were dominated by several distinct γ-, δ- and ε-proteobacterial taxa associated with either sulfur oxidation or sulfate reduction. Our results suggest that these chemolithoautotrophic bacteria utilized several oxidants (oxygen, nitrate, nitrite, nitric oxide and nitrous oxide) to detoxify the sulfidic waters well below the oxic surface. The chemolithoautotrophic activity at our sampling site led to high rates of dark carbon fixation. Assuming that these chemolithoautotrophic rates were maintained throughout the sulfidic waters, they could be representing as much as ∼30% of the photoautotrophic carbon fixation. Postulated changes such as eutrophication and global warming, which lead to an expansion and intensification of OMZs, might also increase the frequency of sulfidic waters. We suggest that the chemolithoautotrophically fixed carbon may be involved in a negative feedback loop that could fuel further sulfate reduction and potentially stabilize the sulfidic OMZ waters.

Effects of geodynamic setting on the redox state of fluids released by subducted mantle lithosphere

NASA Astrophysics Data System (ADS)

Evans, K. A.; Reddy, S. M.; Tomkins, A. G.; Crossley, R. J.; Frost, B. R.

2017-05-01

Magnetite breakdown during subduction of serpentinised ultramafic rocks may produce oxidised fluids that oxidise the deep Earth and/or the sub-arc mantle, either via direct transport of ferric iron, or via redox reactions between ferric iron and other elements, such as sulfur. However, so far, there is no consensus on the oxidation state of fluids released during subduction of ultramafic rocks, or the factors that control this oxidation state. Subducted samples from a magma-poor rifted margin and a supra-subduction zone geodynamic setting were compared to examine evidence of changes in opaque phase assemblage and ferric iron content as a consequence of subduction, and as a function of geodynamic setting. Thermodynamic calculations in the system Fe-Ni-O-H-S and Fe-Ni-O-S at the pressures and temperatures of interest were used to constrain oxygen activities and fluid compositions. Samples from New Caledonia, which exemplify supra-subduction zone mantle, contain awaruite (FeNi3) and equilibrated with hydrogen-bearing fluids at oxygen activity less than the FMQ (fayalite-magnetite-quartz) buffer. In contrast, samples from the Zermatt Saas Zone ophiolite, Western Alps, which are thought to represent mantle from a subducted magma-poor rifted margin, contain magnetite plus sulfur-rich phases such as pyrite (FeS2), and are inferred to have equilibrated with hydrogen-poor fluids at oxygen activity greater than FMQ. This major difference is independent of differences in subduction pressure-temperature conditions, variation in peridotite protolith composition, or the nature of adjacent units. We propose that the Zermatt Saas Zone samples would have undergone more complete serpentinisation prior to subduction than the supra-subduction zone (SSZ) New Caledonian samples. This difference explains the different fluid compositions, because incompletely serpentinised rocks containing olivine and brucite retain or evolve awaruite-bearing assemblages that buffer fluid compositions to high hydrogen activity (aH2). Ultramafic rocks are associated with two distinctly different fluid compositions during pre-subduction and subduction serpentinisation. Initially, while olivine is in equilibrium with infiltrating fluid, mineral assemblages that include awaruite in the rocks buffer fluids to H2-bearing, low aO2 compositions. Deserpentinisation of incompletely serpentinised rocks in which awaruite is present also produces H2-bearing fluids. Once awaruite is exhausted, H2-poor, high aO2 fluids co-exist with awaruite-absent assemblages, and deserpentinisation of such rocks would produce H2O-rich fluids. Thus, deserpentinisation of ultramafic rocks could produce either hydrogen-bearing fluids that could infiltrate and reduce the sub-arc mantle, or more oxidised fluids, which could transfer redox budget to other geochemical reservoirs such as the sub-arc mantle. Therefore, the redox contribution of subducted ultramafic rocks to the deep Earth and sub-arc mantle depends on the extent of protolith serpentinisation. Pre-subduction settings that promote extensive serpentinisation by oxidised fluids at high fluid:rock ratios in open systems, such as slow and ultraslow spreading ridges, transform faults, oceanic core complexes, and exhumed mantle at rifted continental margins, may produce more oxidised fluids than those associated with less pervasive serpentinisation and fluids that may be rock-buffered to a reduced state.

The Effects of Oxygen Concentration on Benthic Foraminiferal Growth and Size

NASA Astrophysics Data System (ADS)

Ng, B.; Keating-Bitonti, C.; Payne, J.

2015-12-01

Many organisms use oxygen through cellular respiration in order to gain energy. For this reason, oxygen has a significant influence on organism size and growth. The amount of oxygen an organism needs depends on its metabolic demand, which is partially a function organism size (i.e., mass). The Santa Monica Basin (SMB) is an oxygen minimum zone located off the southern coast of California that maintains a steep oxygen gradient and is thus an ideal location for conducting research on how oxygen influences organism size. Here we use benthic foraminifera, widespread single-celled protists that produce shells (tests), to study the controls of oxygen on organism size. Because cell mass and cell volume are correlated, we study trends in the log test volume of four abundant species from SMB: Uvigerina peregrina, Bolivina spissa, B. argentea, Loxostomum pseudobeyrichi. These foraminifera make multi-chambered tests, thus we also count the number of chambers per specimen in order to further assess their growth under varying oxygen concentrations. We analyzed the data using quantile regressions to determine trends in not only median values of the log test volume and number of chambers as a function of oxygen concentrations, but also in the 10th, 25th, 75th, and 90th percentiles because oxygen availability often constrains the maximum and minimum size of organisms. Our results show a positive correlation between oxygen concentration and the maximum log test volumes of L. pseudobeyrichi and B. argentea, supporting our hypothesis. However, we observed a negative correlation between oxygen concentration and the maximum percentiles of log test volume in U. peregrina. Nevertheless, U. peregrina still displays a positive correlation between chamber number and oxygen concentrations in line with our hypothesis. The preponderance of trends supporting a direct correlation between log test volume or chamber number and oxygen concentration suggest that oxygen limits the maximum obtainable size of benthic foraminifera through its effects on test volume or chamber growth. This study is important because it holds a glimpse into how changes in oxygen levels can affect organisms given current fluctuations in oxygen level around the world due to man-made climate change.

Iodine I 131 Tositumomab, Etoposide and Cyclophosphamide Followed by Autologous Stem Cell Transplant in Treating Patients With Relapsed or Refractory Non-Hodgkin's Lymphoma

ClinicalTrials.gov

2017-07-21

Anaplastic Large Cell Lymphoma; Cutaneous B-cell Non-Hodgkin Lymphoma; Extranodal Marginal Zone B-cell Lymphoma of Mucosa-associated Lymphoid Tissue; Nodal Marginal Zone B-cell Lymphoma; Recurrent Adult Burkitt Lymphoma; Recurrent Adult Diffuse Large Cell Lymphoma; Recurrent Adult Diffuse Mixed Cell Lymphoma; Recurrent Adult Diffuse Small Cleaved Cell Lymphoma; Recurrent Adult Immunoblastic Large Cell Lymphoma; Recurrent Adult Lymphoblastic Lymphoma; Recurrent Grade 1 Follicular Lymphoma; Recurrent Grade 2 Follicular Lymphoma; Recurrent Grade 3 Follicular Lymphoma; Recurrent Mantle Cell Lymphoma; Recurrent Marginal Zone Lymphoma; Splenic Marginal Zone Lymphoma; Waldenström Macroglobulinemia

Homeobox NKX2-3 promotes marginal-zone lymphomagenesis by activating B-cell receptor signalling and shaping lymphocyte dynamics

PubMed Central

Robles, Eloy F.; Mena-Varas, Maria; Barrio, Laura; Merino-Cortes, Sara V.; Balogh, Péter; Du, Ming-Qing; Akasaka, Takashi; Parker, Anton; Roa, Sergio; Panizo, Carlos; Martin-Guerrero, Idoia; Siebert, Reiner; Segura, Victor; Agirre, Xabier; Macri-Pellizeri, Laura; Aldaz, Beatriz; Vilas-Zornoza, Amaia; Zhang, Shaowei; Moody, Sarah; Calasanz, Maria Jose; Tousseyn, Thomas; Broccardo, Cyril; Brousset, Pierre; Campos-Sanchez, Elena; Cobaleda, Cesar; Sanchez-Garcia, Isidro; Fernandez-Luna, Jose Luis; Garcia-Muñoz, Ricardo; Pena, Esther; Bellosillo, Beatriz; Salar, Antonio; Baptista, Maria Joao; Hernandez-Rivas, Jesús Maria; Gonzalez, Marcos; Terol, Maria Jose; Climent, Joan; Ferrandez, Antonio; Sagaert, Xavier; Melnick, Ari M.; Prosper, Felipe; Oscier, David G.; Carrasco, Yolanda R.; Dyer, Martin J. S.; Martinez-Climent, Jose A.

2016-01-01

NKX2 homeobox family proteins have a role in cancer development. Here we show that NKX2-3 is overexpressed in tumour cells from a subset of patients with marginal-zone lymphomas, but not with other B-cell malignancies. While Nkx2-3-deficient mice exhibit the absence of marginal-zone B cells, transgenic mice with expression of NKX2-3 in B cells show marginal-zone expansion that leads to the development of tumours, faithfully recapitulating the principal clinical and biological features of human marginal-zone lymphomas. NKX2-3 induces B-cell receptor signalling by phosphorylating Lyn/Syk kinases, which in turn activate multiple integrins (LFA-1, VLA-4), adhesion molecules (ICAM-1, MadCAM-1) and the chemokine receptor CXCR4. These molecules enhance migration, polarization and homing of B cells to splenic and extranodal tissues, eventually driving malignant transformation through triggering NF-κB and PI3K-AKT pathways. This study implicates oncogenic NKX2-3 in lymphomagenesis, and provides a valid experimental mouse model for studying the biology and therapy of human marginal-zone B-cell lymphomas. PMID:27297662

Ventilation rates and activity levels of juvenile jumbo squid under metabolic suppression in the oxygen minimum zone.

PubMed

Trübenbach, Katja; Pegado, Maria R; Seibel, Brad A; Rosa, Rui

2013-02-01

The Humboldt (jumbo) squid, Dosidicus gigas, is a part-time resident of the permanent oxygen minimum zone (OMZ) in the Eastern Tropical Pacific and, thereby, it encounters oxygen levels below its critical oxygen partial pressure. To better understand the ventilatory mechanisms that accompany the process of metabolic suppression in these top oceanic predators, we exposed juvenile D. gigas to the oxygen levels found in the OMZ (1% O(2), 1 kPa, 10 °C) and measured metabolic rate, activity cycling patterns, swimming mode, escape jet (burst) frequency, mantle contraction frequency and strength, stroke volume and oxygen extraction efficiency. In normoxia, metabolic rate varied between 14 and 29 μmol O(2) g(-1) wet mass h(-1), depending on the level of activity. The mantle contraction frequency and strength were linearly correlated and increased significantly with activity level. Additionally, an increase in stroke volume and ventilatory volume per minute was observed, followed by a mantle hyperinflation process during high activity periods. Squid metabolic rate dropped more than 75% during exposure to hypoxia. Maximum metabolic rate was not achieved under such conditions and the metabolic scope was significantly decreased. Hypoxia changed the relationship between mantle contraction strength and frequency from linear to polynomial with increasing activity, indicating that, under hypoxic conditions, the jumbo squid primarily increases the strength of mantle contraction and does not regulate its frequency. Under hypoxia, jumbo squid also showed a larger inflation period (reduced contraction frequency) and decreased relaxed mantle diameter (shortened diffusion pathway), which optimize oxygen extraction efficiency (up to 82%/34%, without/with consideration of 60% potential skin respiration). Additionally, they breathe 'deeply', with more powerful contractions and enhanced stroke volume. This deep-breathing behavior allows them to display a stable ventilatory volume per minute, and explains the maintenance of the squid's cycling activity under such O(2) conditions. During hypoxia, the respiratory cycles were shorter in length but increased in frequency. This was accompanied by an increase in the number of escape jets during active periods and a faster switch between swimming modes. In late hypoxia (onset ~170 ± 10 min), all the ventilatory processes were significantly reduced and followed by a lethargic state, a behavior that seems closely associated with the process of metabolic suppression and enables the squid to extend its residence time in the OMZ.

Biological nitrate transport in sediments on the Peruvian margin mitigates benthic sulfide emissions and drives pelagic N loss during stagnation events

NASA Astrophysics Data System (ADS)

Dale, A. W.; Sommer, S.; Lomnitz, U.; Bourbonnais, A.; Wallmann, K.

2016-06-01

Benthic N cycling in the Peruvian oxygen minimum zone (OMZ) was investigated at ten stations along 12 °S from the middle shelf (74 m) to the upper slope (1024 m) using in situ flux measurements, sediment biogeochemistry and modeling. Middle shelf sediments were covered by mats of the filamentous bacteria Thioploca spp. and contained a large 'hidden' pool of nitrate that was not detectable in the porewater. This was attributed to a biological nitrate reservoir stored within the bacteria to oxidize sulfide during 'dissimilatory nitrate reduction to ammonium' (DNRA). The extremely high rates of DNRA on the shelf (15.6 mmol m-2 d-1 of N), determined using an empirical steady-state model, could easily supply all the ammonium requirements for anammox in the water column. The model further showed that denitrification by foraminifera may account for 90% of N2 production at the lower edge of the OMZ. At the time of sampling, dissolved oxygen was below detection limit down to 400 m and the water body overlying the shelf had stagnated, resulting in complete depletion of nitrate and nitrite. A decrease in the biological nitrate pool was observed on the shelf during fieldwork concomitant with a rise in porewater sulfide levels in surface sediments to 2 mM. Using a non-steady state model to simulate this natural anoxia experiment, these observations were shown to be consistent with Thioploca surviving on a dwindling intracellular nitrate reservoir to survive the stagnation period. The model shows that sediments hosting Thioploca are able to maintain high ammonium fluxes for many weeks following stagnation, potentially sustaining pelagic N loss by anammox. In contrast, sulfide emissions remain low, reducing the economic risk to the Peruvian fishery by toxic sulfide plume development.

Microbialites and global environmental change across the Permian-Triassic boundary: a synthesis.

PubMed

Kershaw, S; Crasquin, S; Li, Y; Collin, P-Y; Forel, M-B; Mu, X; Baud, A; Wang, Y; Xie, S; Maurer, F; Guo, L

2012-01-01

Permian-Triassic boundary microbialites (PTBMs) are thin (0.05-15 m) carbonates formed after the end-Permian mass extinction. They comprise Renalcis-group calcimicrobes, microbially mediated micrite, presumed inorganic micrite, calcite cement (some may be microbially influenced) and shelly faunas. PTBMs are abundant in low-latitude shallow-marine carbonate shelves in central Tethyan continents but are rare in higher latitudes, likely inhibited by clastic supply on Pangaea margins. PTBMs occupied broadly similar environments to Late Permian reefs in Tethys, but extended into deeper waters. Late Permian reefs are also rich in microbes (and cements), so post-extinction seawater carbonate saturation was likely similar to the Late Permian. However, PTBMs lack widespread abundant inorganic carbonate cement fans, so a previous interpretation that anoxic bicarbonate-rich water upwelled to rapidly increase carbonate saturation of shallow seawater, post-extinction, is problematic. Preliminary pyrite framboid evidence shows anoxia in PTBM facies, but interbedded shelly faunas indicate oxygenated water, perhaps there was short-term pulsing of normally saturated anoxic water from the oxygen-minimum zone to surface waters. In Tethys, PTBMs show geographic variations: (i) in south China, PTBMs are mostly thrombolites in open shelf settings, largely recrystallised, with remnant structure of Renalcis-group calcimicrobes; (ii) in south Turkey, in shallow waters, stromatolites and thrombolites, lacking calcimicrobes, are interbedded, likely depth-controlled; and (iii) in the Middle East, especially Iran, stromatolites and thrombolites (calcimicrobes uncommon) occur in different sites on open shelves, where controls are unclear. Thus, PTBMs were under more complex control than previously portrayed, with local facies control playing a significant role in their structure and composition. © 2011 Blackwell Publishing Ltd.

Distal facies variability within the Upper Triassic part of the Otuk Formation in northern Alaska

USGS Publications Warehouse

Whidden, Katherine J.; Dumoulin, Julie A.; Whalen, M.T.; Hutton, E.; Moore, Thomas; Gaswirth, Stephanie

2014-01-01

The Triassic-Jurassic Otuk Formation is a potentially important source rock in allochthonous structural positions in the northern foothills of the Brooks Range in the North Slope of Alaska. This study focuses on three localities of the Upper Triassic (Norian) limestone member, which form a present-day, 110-km-long, east-west transect in the central Brooks Range. All three sections are within the structurally lowest Endicott Mountain allochthon and are interpreted to have been deposited along a marine outer shelf with a ramp geometry.The uppermost limestone member of the Otuk was chosen for this study in order to better understand lateral and vertical variability within carbonate source rocks, to aid prediction of organic richness, and ultimately, to evaluate the potential for these units to act as continuous (or unconventional) reservoirs. At each locality, 1 to 4 m sections of the limestone member were measured and sampled in detail to capture fine-scale features. Hand sample and thin section descriptions reveal four major microfacies in the study area, and one diagenetically recrystallized microfacies. Microfacies 1 and 2 are interpreted to represent redeposition of material by downslope transport, whereas microfacies 3 and 4 have high total organic carbon (TOC) values and are classified as primary depositional organofacies. Microfacies 3 is interpreted to have been deposited under primarily high productivity conditions, with high concentrations of radiolarian tests. Microfacies 4 was deposited under the lowest relative-oxygen conditions, but abundant thin bivalve shells indicate that the sediment-water interface was probably not anoxic.The Otuk Formation is interpreted to have been deposited outboard of a southwest-facing ramp margin, with the location of the three limestone outcrops likely in relatively close proximity during deposition. All three sections have evidence of transported material, implying that the Triassic Alaskan Basin was not a low-energy, deep-water setting, but rather a dynamic system with intermittent, yet significant, downslope flow. Upwelling played an important role in the small-scale vertical variability in microfacies. The zone of upwelling and resultant oxygen-minimum zone may have migrated across the ramp during fourth- or fifth-order sea-level changes.

Modeling Primary Productivity in the Margin Ice Zone from Glider-Based Measurements of Chlorophyll and Light during the 2014 Miz Program

NASA Astrophysics Data System (ADS)

Perry, M. J.; Lee, C.; Rainville, L.; Cetinic, I.; Yang, E. J.; Kang, S. H.

2016-02-01

In late summer 2014 during the Marginal Ice Zone (MIZ) Experiment, an international project sponsored by ONR, four Seagliders transited open water, through the marginal ice zone, and under ice-covered regions in the Beaufort Sea, penetrating as far as 100 km into the ice pack. The gliders navigated either by GPS in open water or, when under the ice, by acoustics from sound sources embedded in the MIZ autonomous observing array. The glider sensor suite included temperature, temperature microstructure, salinity, oxygen, chlorophyll fluorescence, optical backscatter, and multi-spectral downwelling irradiance. Cruises on the IBRV Araon operating in the open Beaufort Sea and on the R/V Ukpik and Norseman operating in continental shelf waters off Alaska's north slope allowed us to construct proxy libraries for converting chlorophyll fluorescence to chlorophyll concentration and optical backscatter to particulate organic carbon concentration. Water samples were collected for chlorophyll and particulate organic carbon analysis on the cruises and aligned with optical profiles of fluorescence and backscatter using sensors that were factory calibrated at the same time as the glider sensors. Fields of chlorophyll, particulate organic carbon, light, and primary productivity are constructed from the glider data. Productivity is modeled as a function of chlorophyll and light, using photosynthesis-light (PE) models with available PE parameters from Arctic measurements. During August the region under the ice was characterized by a deep chlorophyll maximum layer with low rates of production in overlying waters. A phytoplankton bloom developed in open water at the end of September, preceding the rapid reformation of ice, despite shorter days and reduce irradiation.

Middle to Late Eocene paleoenvironmental changes in a marine transgressive sequence from the northern Tethyan margin (Adelholzen, Germany).

PubMed

Gebhardt, Holger; Ćorić, Stjepan; Darga, Robert; Briguglio, Antonino; Schenk, Bettina; Werner, Winfried; Andersen, Nils; Sames, Benjamin

The northern Tethyan margin is a key region for determining environmental changes associated with the collision of continental and oceanic tectonic plates and Alpine orogeny. Herein we investigated Middle to Late Eocene neritic to bathyal sediments deposited during an interval of unstable climatic conditions. In order to quantify paleoenvironmental changes, we developed a detailed age model based on biozonations of planktic foraminifera, calcareous nannoplankton, and larger benthic foraminifera. The section at Adelholzen covers the almost complete Lutetian Stage (calcareous nannoplankton zones NP15a-16, planktic foraminifera zones E8-11, shallow benthic (foraminifera) zones SBZ13-15) and large parts of the Priabonian Stage (NP18-20, E14/15), while the intermediate Bartonian Stage (NP17) is completely missing. Foraminiferal, calcareous nannoplankton, and macrofossil assemblages were analyzed for changes in paleo-water depth, mixing and stratification, paleo-primary productivity (pPP), food supply, and bottom water oxygenation. Paleo-water depth estimates range from 50 m (middle neritic, early Lutetian) to nearly 500 m (upper bathyal, late Priabonian). The combination of assemblage composition, planktic and benthic foraminiferal accumulation rates, and derived parameters (carbon-flux to sea floor, pPP) enabled us to identify a series of distinct paleoceanographic events of at least regional significance. Such events are characterized by considerable changes in primary productivity or reduced bottom water ventilation. Calculated pPP-values indicate oligotrophic conditions throughout.

Benthic Oxygen Uptake in the Arctic Ocean Margins - A Case Study at the Deep-Sea Observatory HAUSGARTEN (Fram Strait)

PubMed Central

Cathalot, Cecile; Rabouille, Christophe; Sauter, Eberhard; Schewe, Ingo; Soltwedel, Thomas

2015-01-01

The past decades have seen remarkable changes in the Arctic, a hotspot for climate change. Nevertheless, impacts of such changes on the biogeochemical cycles and Arctic marine ecosystems are still largely unknown. During cruises to the deep-sea observatory HAUSGARTEN in July 2007 and 2008, we investigated the biogeochemical recycling of organic matter in Arctic margin sediments by performing shipboard measurements of oxygen profiles, bacterial activities and biogenic sediment compounds (pigment, protein, organic carbon, and phospholipid contents). Additional in situ oxygen profiles were performed at two sites. This study aims at characterizing benthic mineralization activity along local bathymetric and latitudinal transects. The spatial coverage of this study is unique since it focuses on the transition from shelf to Deep Ocean, and from close to the ice edge to more open waters. Biogeochemical recycling across the continental margin showed a classical bathymetric pattern with overall low fluxes except for the deepest station located in the Molloy Hole (5500 m), a seafloor depression acting as an organic matter depot center. A gradient in benthic mineralization rates arises along the latitudinal transect with clearly higher values at the southern stations (average diffusive oxygen uptake of 0.49 ± 0.18 mmol O2 m-2 d-1) compared to the northern sites (0.22 ± 0.09 mmol O2 m-2 d-1). The benthic mineralization activity at the HAUSGARTEN observatory thus increases southward and appears to reflect the amount of organic matter reaching the seafloor rather than its lability. Although organic matter content and potential bacterial activity clearly follow this gradient, sediment pigments and phospholipids exhibit no increase with latitude whereas satellite images of surface ocean chlorophyll a indicate local seasonal patterns of primary production. Our results suggest that predicted increases in primary production in the Arctic Ocean could induce a larger export of more refractory organic matter due to the longer production season and the extension of the ice-free zone. PMID:26465885

Normal fates and states of specification of different regions in the axolotl gastrula.

PubMed

Cleine, J H; Slack, J M

1985-04-01

A fate map was constructed for four regions of the early gastrula of Ambystoma mexicanum using orthotopic grafts from donors labelled with FLDx (fluoresceinated-lysinated-dextran). The region around the animal pole gave rise to epidermis only and did not include prospective neural plate. The dorsal marginal zone contributed to cephalic endoderm and to the whole length of the axial mesoderm (notochord and somites), the lateral marginal zone to lateroventral and somitic mesoderm, and the ventral marginal zone to lateroventral mesoderm. It was found that the dorsal marginal zone contributed relatively more to the anterior regions of the mesodermal mantle and the ventral marginal zone more to its posterior parts. The same regions of the gastrula and also vegetal yolky tissue were cultured as explants and labelled with tritiated mannose. Their glycoprotein synthesis pattern was compared to those of the neurula tissues to which they contribute in vivo. Animal pole explants synthesized large amounts of the epidermis-specific marker epimucin. Dorsal marginal zone explants did not synthesize epimucin but did make amounts of S2 and S6 indicative of mesoderm, as well as the notochord-specific markers S2.2 and S3.2. Lateral marginal zone explants showed the same pattern as the dorsal marginal zone including the two notochord-specific markers, although they do not contribute to notochord in vivo. Ventral marginal zone explants were more variable in their behaviour. Yolky tissue from the vegetal hemisphere of the gastrula or the archenteron floor of the neurula synthesized mainly polydisperse material of high molecular weight rather than discrete glycoproteins. The results indicate that at the early gastrula stage states of specification exist which correspond to the three germ layers, ecto-, meso- and endoderm. The ectodermal specification of animal pole explants is quite robust and cannot easily be changed by variation of the culture conditions. However treatment with a concentrated pellet of vegetalizing factor does induce a change to mesodermal specification, which is clearly detectable in the pattern of glycoprotein synthesis. Similar inductive interactions between different regions of the early embryo are thought to occur during normal development.

Intensification and deepening of the Arabian Sea Oxygen Minimum Zone in response to increase in Indian monsoon wind intensity

NASA Astrophysics Data System (ADS)

Lachkar, Zouhair; Smith, Shafer; Levy, Marina

2017-04-01

The decline in oxygen supply to the ocean associated with global warming of sea-surface temperatures is expected to expand the oxygen minimum zones (OMZs). This global trend can be attenuated or amplified by regional processes. In the Arabian Sea, the World's thickest OMZ is highly vulnerable to changes in the Indian monsoon wind. Evidence from paleo records and future climate projections indicate strong variations of the Indian monsoon wind intensity over climatic timescales. Yet, the response of the OMZ to these wind changes remains poorly understood and its amplitude and timescale unexplored. Here, we investigate the impacts of perturbations in Indian monsoon wind intensity (from -50% to +50%) on the size and intensity of the Arabian Sea OMZ, and examine the biogeochemical and ecological implications of these changes. To this end, we conducted a series of eddy-resolving simulations of the Arabian Sea using the Regional Oceanic Modeling System (ROMS) coupled to a nitrogen based Nutrient-Phytoplankton-Zooplankton-Detritus (NPZD) ecosystem model that includes a representation of the O2 cycle. We show that the Arabian Sea productivity increases and its OMZ expands and deepens in response to monsoon wind intensification. These responses are dominated by the perturbation of the summer monsoon wind, whereas the changes in the winter monsoon wind play a secondary role. While the productivity responds quickly and nearly linearly to wind increase (i.e., on a timescale of years), the OMZ response is much slower (i.e., a timescale of decades). Our analysis reveals that the OMZ expansion at depth is driven by increased oxygen biological consumption, whereas its surface weakening is induced by increased lateral ventilation. The enhanced lateral ventilation favors episodic intrusions of oxic waters in the lower epipelagic zone (100-200m) of the western and central Arabian Sea, leading to intermittent expansions of habitats and a more frequent alternation of hypoxic and oxic conditions there. The increased productivity and deepening of the OMZ also lead to a strong intensification of denitrification at depth, resulting in a substantial amplification of fixed nitrogen depletion in the Arabian Sea. We conclude that changes in the Indian monsoon can affect, on longer timescales, the large-scale biogeochemical cycles of nitrogen and carbon, with a positive feedback on climate change in the case of stronger winds.

MDX-010 in Treating Patients With Recurrent or Refractory Lymphoma

ClinicalTrials.gov

2014-05-22

Adult Grade III Lymphomatoid Granulomatosis; B-cell Chronic Lymphocytic Leukemia; Cutaneous B-cell Non-Hodgkin Lymphoma; Extranodal Marginal Zone B-cell Lymphoma of Mucosa-associated Lymphoid Tissue; Intraocular Lymphoma; Nodal Marginal Zone B-cell Lymphoma; Recurrent Adult Burkitt Lymphoma; Recurrent Adult Diffuse Large Cell Lymphoma; Recurrent Adult Diffuse Mixed Cell Lymphoma; Recurrent Adult Diffuse Small Cleaved Cell Lymphoma; Recurrent Adult Grade III Lymphomatoid Granulomatosis; Recurrent Adult Hodgkin Lymphoma; Recurrent Adult Immunoblastic Large Cell Lymphoma; Recurrent Adult Lymphoblastic Lymphoma; Recurrent Grade 1 Follicular Lymphoma; Recurrent Grade 2 Follicular Lymphoma; Recurrent Mantle Cell Lymphoma; Recurrent Marginal Zone Lymphoma; Refractory Hairy Cell Leukemia; Small Intestine Lymphoma; Splenic Marginal Zone Lymphoma; Testicular Lymphoma; Waldenström Macroglobulinemia

Remote sensing of the marginal ice zone during Marginal Ice Zone Experiment (MIZEX) 83

NASA Technical Reports Server (NTRS)

Shuchman, R. A.; Campbell, W. J.; Burns, B. A.; Ellingsen, E.; Farrelly, B. A.; Gloersen, P.; Grenfell, T. C.; Hollinger, J.; Horn, D.; Johannessen, J. A.

1984-01-01

The remote sensing techniques utilized in the Marginal Ice Zone Experiment (MIZEX) to study the physical characteristics and geophysical processes of the Fram Strait Region of the Greenland Sea are described. The studies, which utilized satellites, aircraft, helicopters, and ship and ground-based remote sensors, focused on the use of microwave remote sensors. Results indicate that remote sensors can provide marginal ice zone characteristics which include ice edge and ice boundary locations, ice types and concentration, ice deformation, ice kinematics, gravity waves and swell (in the water and the ice), location of internal wave fields, location of eddies and current boundaries, surface currents and sea surface winds.

Biogenic sedimentation beneath the California Current system for the past 30 kyr and its paleoceanographic significance

USGS Publications Warehouse

Gardner, J.V.; Dean, W.E.; Dartnell, P.

1997-01-01

A north-south transect of 17 cores was constructed along the eastern boundary of the California Current system from 33?? to 42?? N to investigate the changes in biogenic sedimentation over the past 30 kyr. Percentages and mass accumulation rates of CaCO3, Corg, and biogenic opal were assembled at 500 to 1000 years/sample to provide relatively high resolution. Time-space maps reveal a complex pattern of changes that do not follow a simple glacial-interglacial two-mode model. Biogenic sedimentation shows responses that are sometimes time-transgressive and sometimes coeval, and most of the responses show more consistency within a limited geographic area than any temporal consistency. Reconstructed conditions during late oxygen isotope stage 3 were more like early Holocene conditions than any other time during the last 30 kyr. Coastal upwelling and productivity during oxygen isotope stage 3 were relatively strong along the central California margin but were weak along the northern California margin. Precipitation increased during the last glacial interval in the central California region, and the waters of the southern California margin had relatively low productivity. Productivity on the southern Oregon margin was relatively low at the beginning of the last glacial interval, but by about 20 ka, productivity in this area significantly increased. This change suggests that the center of the divergence of the West Wind Drift shifted south at this time. The end of the last glacial interval was characterized by increased productivity in the southern California margin and increased upwelling along the central California margin but upwelling remained weak along the northern California margin. A sudden (<300 years) decrease in CaCO3, Corg, and biogenic opal occurred at 13 ka. The changes suggest a major reorientation of the atmospheric circulation in the North Pacific and western North America and the establishment of a strong seasonality in the central California region. A carbonate preservation event occurred at 10 ka that appears to reflect the uptake of CO2 by the terrestrial biosphere as the northern latitudes were reforested following retreat of the glaciers. The Holocene has been a period of relatively high productivity in the southern California margin, relatively strong coastal upwelling along the central California margin, relatively weak upwelling along the northern California margin, and the northward migration of the divergence zone of the West Wind Drift.

Molecular tools for investigating microbial community structure and function in oxygen-deficient marine waters.

PubMed

Hawley, Alyse K; Kheirandish, Sam; Mueller, Andreas; Leung, Hilary T C; Norbeck, Angela D; Brewer, Heather M; Pasa-Tolic, Ljiljana; Hallam, Steven J

2013-01-01

Water column oxygen (O2)-deficiency shapes food-web structure by progressively directing nutrients and energy away from higher trophic levels into microbial community metabolism resulting in fixed nitrogen loss and greenhouse gas production. Although respiratory O2 consumption during organic matter degradation is a natural outcome of a productive surface ocean, global-warming-induced stratification intensifies this process leading to oxygen minimum zone (OMZ) expansion. Here, we describe useful tools for detection and quantification of potential key microbial players and processes in OMZ community metabolism including quantitative polymerase chain reaction primers targeting Marine Group I Thaumarchaeota, SUP05, Arctic96BD-19, and SAR324 small-subunit ribosomal RNA genes and protein extraction methods from OMZ waters compatible with high-resolution mass spectrometry for profiling microbial community structure and functional dynamics. © 2013 Elsevier Inc. All rights reserved.

Exploring a microbial ecosystem approach to modeling deep ocean biogeochemical cycles

NASA Astrophysics Data System (ADS)

Zakem, E.; Follows, M. J.

2014-12-01

Though microbial respiration of organic matter in the deep ocean governs ocean and atmosphere biogeochemistry, it is not represented mechanistically in current global biogeochemical models. We seek approaches that are feasible for a global resolution, yet still reflect the enormous biodiversity of the deep microbial community and its associated metabolic pathways. We present a modeling framework grounded in thermodynamics and redox reaction stoichiometry that represents diverse microbial metabolisms explicitly. We describe a bacterial/archaeal functional type with two parameters: a growth efficiency representing the chemistry underlying a bacterial metabolism, and a rate limitation given by the rate of uptake of each of the necessary substrates for that metabolism. We then apply this approach to answer questions about microbial ecology. As a start, we resolve two dominant heterotrophic respiratory pathways- reduction of oxygen and nitrate- and associated microbial functional types. We combine these into an ecological model and a two-dimensional ocean circulation model to explore the organization, biogeochemistry, and ecology of oxygen minimum zones. Intensified upwelling and lateral transport conspire to produce an oxygen minimum at mid-depth, populated by anaerobic denitrifiers. This modeling approach should ultimately allow for the emergence of bacterial biogeography from competition of metabolisms and for the incorporation of microbial feedbacks to the climate system.

Short-term alteration of biotic and abiotic components of the pelagic system in a shallow bay produced by a strong natural hypoxia event

PubMed Central

Veas, Rodrigo; Anabalón, Valeria; Quiñones, Renato A.

2017-01-01

In January 2008 there was an intensive and extensive upwelling event in the southern Humboldt Current System. This event produced an intrusion of water with low dissolved oxygen into Coliumo Bay, which caused massive mortality and the beaching of pelagic and benthic organisms, including zooplankton. During this event, which lasted 3 to 5 days, we studied and evaluated the effect of the hypoxic water in the bay on the abundance of macrozooplankton, nanoplankton and microphytoplankton, the concentration of several nutrients and hydrographic conditions. At the beginning of the hypoxia event the water column had very low dissolved oxygen concentrations (<0.5 mL O2 L-1), low temperatures and high salinity which are characteristics of the oxygen minimum zone from the Humboldt Current System. Redox, pH, nitrate, phosphate, silicate and chlorophyll-a values were the lowest, while nitrate and the phaeopigment values were the highest. The N:P ratio was below 16, and the abundance of nano- and microphytoplankton were at their lowest, the latter also with the lowest proportion of live organisms. Macrozooplankton had the greatest abundance during hypoxia, dominated mainly by crustacean, fish eggs and amphipods. The hypoxia event generated a strong short-term alteration of all biotic and abiotic components of the pelagic system in Coliumo Bay and the neighboring coastal zone. These negative effects associated with strong natural hypoxia events could have important consequences for the productivity and ecosystem functioning of the coastal zone of the Humboldt Current System if, as suggested by several models, winds favorable to upwelling should increase due to climate change. The effects of natural hypoxia in this coastal zone can be dramatic especially for pelagic and benthic species not adapted to endure conditions of low dissolved oxygen. PMID:28715447

Circulation, eddies, oxygen and nutrient changes in the eastern tropical South Pacific Ocean

NASA Astrophysics Data System (ADS)

Czeschel, R.; Stramma, L.; Weller, R. A.; Fischer, T.

2014-09-01

A large, subsurface oxygen deficiency zone is located in the eastern tropical South Pacific Ocean (ETSP). The large-scale circulation in the eastern equatorial Pacific and off Peru in November/December 2012 shows the influence of the equatorial current system, the eastern boundary currents, and the northern reaches of the subtropical gyre. In November 2012 the Equatorial Undercurrent is centered at 250 m depth, deeper than in earlier observations. In December 2012 the equatorial water is transported southeastward near the shelf in the Peru-Chile Undercurrent with a mean transport of 1.6 Sv. In the oxygen minimum zone (OMZ) the flow is overlaid with strong eddy activity on the poleward side of the OMZ. Floats with parking depth at 400 m show fast westward flow in the mid-depth equatorial channel and sluggish flow in the OMZ. Floats with oxygen sensors clearly show the passage of eddies with oxygen anomalies. The long-term float observations in the upper ocean lead to a net community production estimate at about 18° S of up to 16.7 mmol C m-3 yr1 extrapolated to an annual rate and 7.7 mmol C m-3 yr-1 for the time period below the mixed layer. Oxygen differences between repeated ship sections are influenced by the Interdecadal Pacific Oscillation, by the phase of El Niño, by seasonal changes, and by eddies and hence have to be interpreted with care. At and south of the equator the decrease in oxygen in the upper ocean since 1976 is related to an increase in nitrate, phosphate, and in part in silicate.

Circulation, eddies, oxygen, and nutrient changes in the eastern tropical South Pacific Ocean

NASA Astrophysics Data System (ADS)

Czeschel, R.; Stramma, L.; Weller, R. A.; Fischer, T.

2015-06-01

A large subsurface oxygen deficiency zone is located in the eastern tropical South Pacific Ocean (ETSP). The large-scale circulation in the eastern equatorial Pacific and off the coast of Peru in November/December 2012 shows the influence of the equatorial current system, the eastern boundary currents, and the northern reaches of the subtropical gyre. In November 2012 the equatorial undercurrent (EUC) is centered at 250 m depth, deeper than in earlier observations. In December 2012, the equatorial water is transported southeastward near the shelf in the Peru-Chile undercurrent (PCUC) with a mean transport of 1.4 Sv. In the oxygen minimum zone (OMZ), the flow is overlaid with strong eddy activity on the poleward side of the OMZ. Floats with parking depth at 400 m show fast westward flow in the mid-depth equatorial channel and sluggish flow in the OMZ. Floats with oxygen sensors clearly show the passage of eddies with oxygen anomalies. The long-term float observations in the upper ocean lead to a net community production estimate at about 18° S of up to 16.7 mmol C m-3 yr-1 extrapolated to an annual rate and 7.7 mmol C m-3 yr-1 for the time period below the mixed layer. Oxygen differences between repeated ship sections are influenced by the Interdecadal Pacific Oscillation (IPO), by the phase of El Niño, by seasonal changes, and by eddies, and hence have to be interpreted with care. At and south of the Equator the decrease in oxygen in the upper ocean since 1976 is related to an increase in nitrate, phosphate, and in part silicate.

Annual Net Community Production in the Western Subtropical North Pacific Determined from Argo-O2 Measurements

NASA Astrophysics Data System (ADS)

Yang, B.; Emerson, S. R.; Bushinsky, S. M.

2016-02-01

Export of organic carbon from the surface ocean to depth (the biological pump) helps maintain the pCO2 of the atmosphere and the O2 content of the oxygen minimum zones of the ocean. In the upper ocean, at steady state over a seasonal cycle the net organic carbon export is equal to the Annual Net Community Production (ANCP). The geographic distribution of this quantity determined by satellite-predicted Net Primary Production (NPP) and the recycling efficiency in the euphotic zone is more heterogeneous than the limited experimental estimates of ANCP. We evaluate the relationship between these two estimates of ANCP in the subtropical Western North Pacific Ocean ( 165o E and 20o N) using oxygen measurements on Argo Floats. In January of 2015 we deployed four floats with Anderaa oxygen sensors attached to a 60 cm stick on top of the float end cap, which can be readily calibrated against atmospheric pO2. We present data from these floats and air-sea oxygen flux calculations. The degree of oxygen supersaturation in summer is 1-2 percent, and in winter it fluctuates between being over and undersaturated. Evaluating the role of bubbles in winter is critical to an accurate determination of the annual flux. While there is not a full year of data at the time of writing this abstract, there will be when the Ocean Science meeting is held. So far, after nine months of measurements, there is a net flux of oxygen to the atmosphere, indicating that photosynthesis exceeds respiration. In February we will present a full annual cycle of air-sea oxygen flux and an estimate of ANCP in this very rarely studied region of the ocean.

Communities of nirS-type denitrifiers in the water column of the oxygen minimum zone in the eastern South Pacific.

PubMed

Castro-González, Maribeb; Braker, Gesche; Farías, Laura; Ulloa, Osvaldo

2005-09-01

The major sites of water column denitrification in the ocean are oxygen minimum zones (OMZ), such as one in the eastern South Pacific (ESP). To understand the structure of denitrifying communities in the OMZ off Chile, denitrifier communities at two sites in the Chilean OMZ (Antofagasta and Iquique) and at different water depths were explored by terminal restriction fragment length polymorphism analysis and cloning of polymerase chain reaction (PCR)-amplified nirS genes. NirS is a functional marker gene for denitrification encoding cytochrome cd1-containing nitrite reductase, which catalyses the reduction of nitrite to nitric oxide, the key step in denitrification. Major differences were found between communities from the two geographic locations. Shifts in community structure occurred along a biogeochemical gradient at Antofagasta. Canonical correspondence analysis indicated that O2, NO3-, NO2- and depth were important environmental factors governing these communities along the biogeochemical gradient in the water column. Phylogenetic analysis grouped the majority of clones from the ESP in distinct clusters of genes from presumably novel and yet uncultivated denitrifers. These nirS clusters were distantly related to those found in the water column of the Arabian Sea but the phylogenetic distance was even higher compared with environmental sequences from marine sediments or any other habitat. This finding suggests similar environmental conditions trigger the development of denitrifiers with related nirS genotypes despite large geographic distances.

U enrichment and Th/U fractionation in Archean boninites: Implications for paleo-ocean oxygenation and U cycling at juvenile subduction zones

NASA Astrophysics Data System (ADS)

Manikyamba, C.; Said, Nuru; Santosh, M.; Saha, Abhishek; Ganguly, Sohini; Subramanyam, K. S. V.

2018-05-01

Phanerozoic boninites record enrichments of U over Th, giving Th/U: 0.5-1.6, relative to intraoceanic island arc tholeiites (IAT) where Th/U averages 2.6. Uranium enrichment is attributed to incorporation of shallow, oxidized fluids, U-rich but Th-poor, from the slab into the melt column of boninites which form in near-trench to forearc settings of suprasubduction zone ophiolites. Well preserved Archean komatiite-tholeiite, plume-derived, oceanic volcanic sequences have primary magmatic Th/U ratios of 4.4-3.6, and Archean convergent margin IAT volcanic sequences, having REE and HFSE compositions similar to Phanerozoic IAT equivalents, preserve primary Th/U of 4-3.6. The best preserved Archean boninites of the 3.0 Ga Olondo and 2.7 Ga Gadwal greenstone belts, hosted in convergent margin ophiolite sequences, also show relative enrichments of U over Th, with low average Th/U ∼3 relative to coeval IAT, and Phanerozoic counterparts which are devoid of crustal contamination and therefore erupted in an intraoceanic setting, with minimal contemporaneous submarine hydrothermal alteration. Later enrichment of U is unlikely as Th-U-Nb-LREE patterns are coherent in these boninites whereas secondary effects induce dispersion of Th/U ratios. The variation in Th/U ratios from Archean to Phanerozoic boninites of greenstone belts to ophiolitic sequences reflect on genesis of boninitic lavas at different tectono-thermal regimes. Consequently, if the explanation for U enrichment in Phanerozoic boninites also applies to Archean examples, the implication is that U was soluble in oxygenated Archean marine water up to 600 Ma before the proposed great oxygenation event (GOE) at ∼2.4 Ga. This interpretation is consistent with large Ce anomalies in some hydrothermally altered Archean volcanic sequences aged 3.0-2.7 Ga.

Sufficient oxygen for animal respiration 1,400 million years ago

PubMed Central

Zhang, Shuichang; Wang, Xiaomei; Wang, Huajian; Bjerrum, Christian J.; Hammarlund, Emma U.; Costa, M. Mafalda; Connelly, James N.; Zhang, Baomin; Su, Jin; Canfield, Donald E.

2016-01-01

The Mesoproterozoic Eon [1,600–1,000 million years ago (Ma)] is emerging as a key interval in Earth history, with a unique geochemical history that might have influenced the course of biological evolution on Earth. Indeed, although this time interval is rather poorly understood, recent chromium isotope results suggest that atmospheric oxygen levels were <0.1% of present levels, sufficiently low to have inhibited the evolution of animal life. In contrast, using a different approach, we explore the distribution and enrichments of redox-sensitive trace metals in the 1,400 Ma sediments of Unit 3 of the Xiamaling Formation, North China Block. Patterns of trace metal enrichments reveal oxygenated bottom waters during deposition of the sediments, and biomarker results demonstrate the presence of green sulfur bacteria in the water column. Thus, we document an ancient oxygen minimum zone. We develop a simple, yet comprehensive, model of marine carbon−oxygen cycle dynamics to show that our geochemical results are consistent with atmospheric oxygen levels >4% of present-day levels. Therefore, in contrast to previous suggestions, we show that there was sufficient oxygen to fuel animal respiration long before the evolution of animals themselves. PMID:26729865

Recognizing nodal marginal zone lymphoma: recent advances and pitfalls. A systematic review

PubMed Central

van den Brand, Michiel; van Krieken, J. Han J.M.

2013-01-01

The diagnosis of nodal marginal zone lymphoma is one of the remaining problem areas in hematopathology. Because no established positive markers exist for this lymphoma, it is frequently a diagnosis of exclusion, making distinction from other low-grade B-cell lymphomas difficult or even impossible. This systematic review summarizes and discusses the current knowledge on nodal marginal zone lymphoma, including clinical features, epidemiology and etiology, histology, and cytogenetic and molecular features. In particular, recent advances in diagnostics and pathogenesis are discussed. New immunohistochemical markers have become available that could be used as positive markers for nodal marginal zone lymphoma. These markers could be used to ensure more homogeneous study groups in future research. Also, recent gene expression studies and studies describing specific gene mutations have provided clues to the pathogenesis of nodal marginal zone lymphoma, suggesting deregulation of the nuclear factor kappa B pathway. Nevertheless, nodal marginal zone lymphoma remains an enigmatic entity, requiring further study to define its pathogenesis to allow an accurate diagnosis and tailored treatment. However, recent data indicate that it is not related to splenic or extranodal lymphoma, and that it is also not related to lymphoplasmacytic lymphoma. Thus, even though the diagnosis is not always easy, it is clearly a separate entity. PMID:23813646

Structure across the northeastern margin of Flemish Cap, offshore Newfoundland from Erable multichannel seismic reflection profiles: evidence for a transtensional rifting environment

NASA Astrophysics Data System (ADS)

Welford, J. Kim; Hall, Jeremy; Sibuet, Jean-Claude; Srivastava, Shiri P.

2010-11-01

We present the results from processing and interpreting nine multichannel seismic reflection lines collected during the 1992 Erable experiment over the northeastern margin of Flemish Cap offshore Newfoundland. These lines, combined into five cross-sections, provide increased seismic coverage over this lightly probed section of the margin and reveal tectonically significant along-strike variations in the degree and compartmentalization of crustal thinning. Similar to the southeastern margins of Flemish Cap and the Grand Banks, a transitional zone of exhumed serpentinized mantle is interpreted between thinned continental and oceanic crust. The 25 km wide transitional zone bears similarities to the 120 km wide transitional zone interpreted as exhumed serpentinized mantle on the conjugate Irish Atlantic margin but the significant width difference is suggestive of an asymmetric conjugate pair. A 40-50 km wide zone of inferred strike-slip shearing is interpreted and observed to extend along most of the northeastern margin of Flemish Cap. Individual shear zones (SZs) may represent extensions of SZs and normal faults within the Orphan Basin providing further evidence for the rotation and displacement of Flemish Cap out of Orphan Basin. The asymmetry between the Flemish Cap and Irish conjugate pairs is likely due in large part to the rotation and displacement of Flemish Cap which resulted in the Flemish Cap margin displaying features of both a strike-slip margin and an extensional margin.

Mesopelagic microplankton of the Arabian Sea

NASA Astrophysics Data System (ADS)

Gowing, Marcia M.; Garrison, David L.; Wishner, Karen F.; Gelfman, Celia

2003-10-01

The Arabian Sea is notable for its dramatic monsoonal effects on euphotic zone biogeochemical processes and the large spatial extent of its mesopelagic oxygen minimum zone. As part of the US Joint Global Ocean Flux Study Arabian Sea project, we sampled microplankton (organisms 20-200 μm including diatoms, dinoflagellates, ciliates, sarcodines and nauplii) at five depths from 250 to 1000 or 1100 m at six stations during four seasonal cruises in 1995. Abundances of groups of organisms at discrete depths averaged 1-2 l -1 seasonally. Mean seasonal integrated biomass of the assemblage was 29 mg C m -2 during the late Northeast Monsoon, 37 mg C m -2 during the Spring Intermonsoon, 47 mg C m -2 during the late Southwest Monsoon and 49 mg C m -2 during the early Northeast Monsoon. Overall, protozoans dominated the mesopelagic microplankton assemblage. Integrated biomass peaked during the late SW Monsoon at two stations as expected if microplankton responded to surface productivity and mesopelagic organic carbon fluxes. At three stations, microplankton biomass peaked during the early NE Monsoon; this may reflect a continuing response to SW Monsoon productivity signals by these larger, slow-growing organisms. Protozooplankton abundance did not appear to be negatively affected by low (<0.1 ml dissolved O 2 l -1) oxygen, whereas naupliar abundance and biomass were higher where oxygen concentration was higher. Total microplankton biomass was highest where oxygen concentrations and also mesozooplankton biomass were lowest, suggesting that predation also played a role in microplankton distributions. Calculations based on allometric relationships indicated that the mesopelagic heterotrophic microplankton assemblage could, on average, respire 9-38% of the particulate carbon flux that entered the system at 100 m and possibly 18-76% of the flux remaining at 250 m. Microplankton may therefore be significant carbon cyclers in the ocean's vast "twilight zone".

Simulation of hydrodynamics, temperature, and dissolved oxygen in Beaver Lake, Arkansas, 1994-1995

USGS Publications Warehouse

Haggard, Brian; Green, W. Reed

2002-01-01

The tailwaters of Beaver Lake and other White River reservoirs support a cold-water trout fishery of significant economic yield in northwestern Arkansas. The Arkansas Game and Fish Commission has requested an increase in existing minimum flows through the Beaver Lake dam to increase the amount of fishable waters downstream. Information is needed to assess the impact of additional minimum flows on temperature and dissolved-oxygen qualities of reservoir water above the dam and the release water. A two-dimensional, laterally averaged hydrodynamic, thermal and dissolved-oxygen model was developed and calibrated for Beaver Lake, Arkansas. The model simulates surface-water elevation, currents, heat transport and dissolved-oxygen dynamics. The model was developed to assess the impacts of proposed increases in minimum flows from 1.76 cubic meters per second (the existing minimum flow) to 3.85 cubic meters per second (the additional minimum flow). Simulations included assessing (1) the impact of additional minimum flows on tailwater temperature and dissolved-oxygen quality and (2) increasing initial water-surface elevation 0.5 meter and assessing the impact of additional minimum flow on tailwater temperatures and dissolved-oxygen concentrations. The additional minimum flow simulation (without increasing initial pool elevation) appeared to increase the water temperature (<0.9 degrees Celsius) and decrease dissolved oxygen concentration (<2.2 milligrams per liter) in the outflow discharge. Conversely, the additional minimum flow plus initial increase in pool elevation (0.5 meter) simulation appeared to decrease outflow water temperature (0.5 degrees Celsius) and increase dissolved oxygen concentration (<1.2 milligrams per liter) through time. However, results from both minimum flow scenarios for both water temperature and dissolved oxygen concentration were within the boundaries or similar to the error between measured and simulated water column profile values.

Particle export fluxes to the oxygen minimum zone of the eastern tropical North Atlantic

NASA Astrophysics Data System (ADS)

Engel, Anja; Wagner, Hannes; Le Moigne, Frédéric A. C.; Wilson, Samuel T.

2017-04-01

In the ocean, sinking of particulate organic matter (POM) drives carbon export from the euphotic zone and supplies nutrition to mesopelagic communities, the feeding and degradation activities of which in turn lead to export flux attenuation. Oxygen (O2) minimum zones (OMZs) with suboxic water layers (< 5 µmol O2 kg-1) show a lower carbon flux attenuation compared to well-oxygenated waters (> 100 µmol O2 kg-1), supposedly due to reduced heterotrophic activity. This study focuses on sinking particle fluxes through hypoxic mesopelagic waters (< 60 µmol O2 kg-1); these represent ˜ 100 times more ocean volume globally compared to suboxic waters, but they have less been studied. Particle export fluxes and attenuation coefficients were determined in the eastern tropical North Atlantic (ETNA) using two surface-tethered drifting sediment trap arrays with seven trapping depths located between 100 and 600 m. Data on particulate matter fluxes were fitted to the normalized power function Fz = F100 (z/100)-b, with F100 being the flux at a depth (z) of 100 m and b being the attenuation coefficient. Higher b values suggest stronger flux attenuation and are influenced by factors such as faster degradation at higher temperatures. In this study, b values of organic carbon fluxes varied between 0.74 and 0.80 and were in the intermediate range of previous reports, but lower than expected from seawater temperatures within the upper 500 m. During this study, highest b values were determined for fluxes of particulate hydrolyzable amino acids (PHAA), followed by particulate organic phosphorus (POP), nitrogen (PN), carbon (POC), chlorophyll a (Chl a) and transparent exopolymer particles (TEP), pointing to a sequential degradation of organic matter components during sinking. Our study suggests that in addition to O2 concentration, organic matter composition co-determines transfer efficiency through the mesopelagic. The magnitude of future carbon export fluxes may therefore also depend on how organic matter quality in the surface ocean changes under influence of warming, acidification and enhanced stratification.

The anatomy and histology of the bicipital tunnel of the shoulder.

PubMed

Taylor, Samuel A; Fabricant, Peter D; Bansal, Manjula; Khair, M Michael; McLawhorn, Alexander; DiCarlo, Edward F; Shorey, Mary; O'Brien, Stephen J

2015-04-01

The bicipital tunnel is the extra-articular, fibro-osseous structure that encloses the long head of the biceps tendon. Twelve cadaveric shoulder specimens underwent in situ casting of the bicipital tunnel with methyl methacrylate cement to demonstrate structural competence (n = 6) and en bloc harvest with gross and histologic evaluation (n = 6). The percentage of empty tunnel was calculated histologically by subtracting the proportion of cross-sectional area of the long head of the biceps tendon from that of the bicipital tunnel for each zone. Cement casting demonstrated that the bicipital tunnel was a closed space. Zone 1 extended from the articular margin to the distal margin of the subscapularis tendon. Zone 2 extended from the distal margin of the subscapularis tendon to the proximal margin of the pectoralis major tendon. Zone 3 was the subpectoral region. Zones 1 and 2 were both enclosed by a dense connective tissue sheath and demonstrated the presence of synovium. Zone 3 had significantly greater percentage of empty tunnel than zones 1 and 2 did (P < .01). The bicipital tunnel is a closed space with 3 distinct zones. Zones 1 and 2 have similar features, including the presence of synovium, but differ from zone 3. A significant bottleneck occurs between zone 2 and zone 3, most likely at the proximal margin of the pectoralis major tendon. The bicipital tunnel is a closed space where space-occupying lesions may produce a bicipital tunnel syndrome. Careful consideration should be given to surgical techniques that decompress both zones 1 and 2 of the bicipital tunnel. Copyright © 2015 Journal of Shoulder and Elbow Surgery Board of Trustees. Published by Elsevier Inc. All rights reserved.

Selinexor Plus Combination Chemotherapy in Treating Patients With Advanced B Cell Non-Hodgkin Lymphoma

ClinicalTrials.gov

2018-02-12

Diffuse Large B-Cell Lymphoma; Recurrent B-Cell Non-Hodgkin Lymphoma; Recurrent Extranodal Marginal Zone Lymphoma; Recurrent Follicular Lymphoma; Recurrent Indolent Adult Non-Hodgkin Lymphoma; Recurrent Mantle Cell Lymphoma; Recurrent Marginal Zone Lymphoma; Recurrent Waldenstrom Macroglobulinemia; Refractory B-Cell Non-Hodgkin Lymphoma; Refractory Extranodal Marginal Zone Lymphoma; Refractory Follicular Lymphoma; Refractory Mantle Cell Lymphoma; Stage III Non-Hodgkin Lymphoma; Stage IV Non-Hodgkin Lymphoma; Transformed Recurrent Non-Hodgkin Lymphoma

Rituximab, Romidepsin, and Lenalidomide in Treating Patients With Recurrent or Refractory B-cell Non-Hodgkin Lymphoma

ClinicalTrials.gov

2016-08-09

B-cell Adult Acute Lymphoblastic Leukemia; Extranodal Marginal Zone B-cell Lymphoma of Mucosa-associated Lymphoid Tissue; Intraocular Lymphoma; Nodal Marginal Zone B-cell Lymphoma; Recurrent Adult Acute Lymphoblastic Leukemia; Recurrent Adult Burkitt Lymphoma; Recurrent Adult Diffuse Large Cell Lymphoma; Recurrent Adult Diffuse Mixed Cell Lymphoma; Recurrent Adult Diffuse Small Cleaved Cell Lymphoma; Recurrent Adult Grade III Lymphomatoid Granulomatosis; Recurrent Adult Immunoblastic Large Cell Lymphoma; Recurrent Adult Lymphoblastic Lymphoma; Recurrent Grade 1 Follicular Lymphoma; Recurrent Grade 2 Follicular Lymphoma; Recurrent Grade 3 Follicular Lymphoma; Recurrent Mantle Cell Lymphoma; Recurrent Marginal Zone Lymphoma; Recurrent Small Lymphocytic Lymphoma; Refractory Hairy Cell Leukemia; Small Intestine Lymphoma; Splenic Marginal Zone Lymphoma; Testicular Lymphoma; Waldenström Macroglobulinemia

Effects of natural and human-induced hypoxia on coastal benthos

NASA Astrophysics Data System (ADS)

Levin, L. A.; Ekau, W.; Gooday, A. J.; Jorissen, F.; Middelburg, J. J.; Naqvi, S. W. A.; Neira, C.; Rabalais, N. N.; Zhang, J.

2009-10-01

Coastal hypoxia (defined here as <1.42 ml L-1; 62.5 μM; 2 mg L-1, approx. 30% oxygen saturation) develops seasonally in many estuaries, fjords, and along open coasts as a result of natural upwelling or from anthropogenic eutrophication induced by riverine nutrient inputs. Permanent hypoxia occurs naturally in some isolated seas and marine basins as well as in open slope oxygen minimum zones. Responses of benthos to hypoxia depend on the duration, predictability, and intensity of oxygen depletion and on whether H2S is formed. Under suboxic conditions, large mats of filamentous sulfide oxidizing bacteria cover the seabed and consume sulfide. They are hypothesized to provide a detoxified microhabitat for eukaryotic benthic communities. Calcareous foraminiferans and nematodes are particularly tolerant of low oxygen concentrations and may attain high densities and dominance, often in association with microbial mats. When oxygen is sufficient to support metazoans, small, soft-bodied invertebrates (typically annelids), often with short generation times and elaborate branchial structures, predominate. Large taxa are more sensitive than small taxa to hypoxia. Crustaceans and echinoderms are typically more sensitive to hypoxia, with lower oxygen thresholds, than annelids, sipunculans, molluscs and cnidarians. Mobile fish and shellfish will migrate away from low-oxygen areas. Within a species, early life stages may be more subject to oxygen stress than older life stages. Hypoxia alters both the structure and function of benthic communities, but effects may differ with regional hypoxia history. Human-caused hypoxia is generally linked to eutrophication, and occurs adjacent to watersheds with large populations or agricultural activities. Many occurrences are seasonal, within estuaries, fjords or enclosed seas of the North Atlantic and the NW Pacific Oceans. Benthic faunal responses, elicited at oxygen levels below 2 ml L-1, typically involve avoidance or mortality of large species and elevated abundances of enrichment opportunists, sometimes prior to population crashes. Areas of low oxygen persist seasonally or continuously beneath upwelling regions, associated with the upper parts of oxygen minimum zones (SE Pacific, W Africa, N Indian Ocean). These have a distribution largely distinct from eutrophic areas and support a resident fauna that is adapted to survive and reproduce at oxygen concentrations <0.5 ml L-1. Under both natural and eutrophication-caused hypoxia there is loss of diversity, through attrition of intolerant species and elevated dominance, as well as reductions in body size. These shifts in species composition and diversity yield altered trophic structure, energy flow pathways, and corresponding ecosystem services such as production, organic matter cycling and organic C burial. Increasingly the influences of nature and humans interact to generate or exacerbate hypoxia. A warmer ocean is more stratified, holds less oxygen, and may experience greater advection of oxygen-poor source waters, making new regions subject to hypoxia. Future understanding of benthic responses to hypoxia must be established in the context of global climate change and other human influences such as overfishing, pollution, disease, habitat loss, and species invasions.

Hydrothermal Exploration at the Chile Triple Junction - ABE's last adventure?

NASA Astrophysics Data System (ADS)

German, C. R.; Shank, T. M.; Lilley, M. D.; Lupton, J. E.; Blackman, D. K.; Brown, K. M.; Baumberger, T.; Früh-Green, G.; Greene, R.; Saito, M. A.; Sylva, S.; Nakamura, K.; Stanway, J.; Yoerger, D. R.; Levin, L. A.; Thurber, A. R.; Sellanes, J.; Mella, M.; Muñoz, J.; Diaz-Naveas, J. L.; Inspire Science Team

2010-12-01

In February and March 2010 we conducted preliminary exploration for hydrothermal plume signals along the East Chile Rise where it intersects the continental margin at the Chile Triple Junction (CTJ). This work was conducted as one component of our larger NOAA-OE funded INSPIRE project (Investigation of South Pacific Reducing Environments) aboard RV Melville cruise MV 1003 (PI: Andrew Thurber, Scripps) with all shiptime funded through an award of the State of California to Andrew Thurber and his co-PI's. Additional support came from the Census of Marine Life (ChEss and CoMarge projects). At sea, we conducted a series of CTD-rosette and ABE autonomous underwater vehicle operations to prospect for and determine the nature of any seafloor venting at, or adjacent to, the point where the the East Chile Rise subducts beneath the continental margin. Evidence from in situ sensing (optical backscatter, Eh) and water column analyses of dissolved CH4, δ3He and TDFe/TDMn concentrations document the presence of two discrete sites of venting, one right at the triple junction and the other a further 10km along axis, north of the Triple Junction, but still within the southernmost segment of the East Chile Rise. From an intercomparison of the abundance of different chemical signals we can intercompare likely characteristics of these differet source sites and also differentiate between them and the high methane concentrations released from cold seep sites further north along the Chile Margin, both with the CTJ region and also at the Concepcion Methane Seep Area (CMSA). This multi-disciplinary and international collaboration - involving scientists from Chile, the USA, Europe and Japan - can serve as an excellent and exciting launchpoint for wide-ranging future investigations of the Chile Triple Junction area - the only place on Earth where an oceanic spreading center is being actively subducted beneath a continent and also the only place on Earth where all known forms of deep-sea chemically-reducing ecosystem (hydrothermal vents, cold seeps, oxygen minimum zones and large organic falls) have the potential to co-exist.

Modeling anoxic aggregates in the ocean - implications for nitrogen, sulfur and trace metal cycling

NASA Astrophysics Data System (ADS)

Bianchi, D.; Weber, T. S.; Deutsch, C.

2016-02-01

Anoxic conditions are uncommon in the open ocean, and mostly confined to the cores of oxygen minimum zones (OMZs). When oxygen runs out, a suite of alternative electron acceptors are used, leading to denitrification and, rarely in open waters, sulfate reduction. Anoxic conditions have been shown to develop inside millimeter-scale organic particles and aggregates, establishing microscale gradients that could sustain diverse microbial communities along a sequence of redox niches. We develop a model of the biogeochemistry of anoxic aggregates that includes aerobic and anaerobic reactions in a diffusion-limited environment, and present analytical and numerical solutions for the conditions that allow denitrification and sulfate reduction inside aggregates. The model is applied to realistic size spectra of particles sinking through the water column, and used to estimate the potential for particle-bound denitrification and sulfate reduction in the global ocean. We show that anoxia inside aggregates may be common throughout low oxygen waters, extending the niche of denitrifying metabolisms beyond fully anoxic zones. In the OMZ cores, aggregates can sustain pockets of sulfate reduction in otherwise non-sulfidic waters, depending on ambient nitrate concentrations, particle respiration rates, and other factors. We further discuss the implications for nitrogen, sulfur and trace metal cycling in the ocean.

Two-step deoxygenation at the end of the Paleoproterozoic Lomagundi Event

NASA Astrophysics Data System (ADS)

Ossa Ossa, Frantz; Eickmann, Benjamin; Hofmann, Axel; Planavsky, Noah J.; Asael, Dan; Pambo, Florent; Bekker, Andrey

2018-03-01

The ca. 2.1 Ga Francevillian Group of Gabon was deposited in the aftermath of the Great Oxidation Event (GOE) and records the Lomagundi Event (LE), which is the most pronounced and long-lived carbon isotope excursion in the geologic record. Moreover, the sedimentary succession contains putative evidence for the earliest appearance of macro-eukaryotes. An emerging paradigm is that the end of the LE was accompanied by a deoxygenation event that preceded the apparent stability of environmental and redox conditions as well as the carbon cycle characteristic of the Mesoproterozoic. However, the processes that led to deoxygenation some 300 to 200 Ma after the beginning of the GOE are not well understood. Here we present a multi-proxy stable isotope (δ34 S, Δ33 S, Δ36 S, δ98 Mo , δ13Corg, δ13Ccarb, and δ18Ocarb) study of the Francevillian Group. We suggest that sedimentation of the lower part of the Francevillian Group took place during the LE in oxygenated shallow waters with elevated sulfate concentrations. Two episodes of anoxic water shoaling during deposition of the upper Francevillian Group correspond with broader marine deoxygenation and a contraction of the seawater sulfate reservoir. This shoaling of anoxic conditions may be linked to intense submarine hydrothermal and volcanic activity that led to sedimentary manganese deposits. We propose that increased concentrations of aqueous, hydrothermally sourced reductants drove oxygen consumption during the first deoxygenation event and established a sulfidic oxygen-minimum zone at the margin of the shallow shelf. Carbonates with positive δ13Ccarb values characteristic of the LE precipitated during this first stage of deoxygenation. The second deoxygenation, separated from the previous event by a period of well-oxygenated conditions, was marked by a stronger contraction of the seawater sulfate reservoir and coincided with the end of the LE. During this time, widespread euxinic conditions were established in shallow (above storm wave base) marine environments. The presence of a shallow-water redoxcline points to a generally low-oxygen atmosphere-ocean system. Further, the negative co-variation between δ34 S and δ13 C values in sediments of the Francevillian Group and other sedimentary successions of similar age worldwide suggests that the inferred two-step deoxygenation corresponding to the end of the LE reflects global rather than local events that likely occurred between ∼2.1 and 2.05 Ga ago.

Phanerozoic tectonic evolution of the Circum-North Pacific

USGS Publications Warehouse

Nokleberg, Warren J.; Parfenov, Leonid M.; Monger, James W.H.; Norton, Ian O.; Khanchuk, Alexander I.; Stone, David B.; Scotese, Christopher R.; Scholl, David W.; Fujita, Kazuya

2000-01-01

The Phanerozoic tectonic evolution of the Circum-North Pacific is recorded mainly in the orogenic collages of the Circum-North Pacific mountain belts that separate the North Pacific from the eastern part of the North Asian Craton and the western part of the North American Craton. These collages consist of tectonostratigraphic terranes that are composed of fragments of igneous arcs, accretionary-wedge and subduction-zone complexes, passive continental margins, and cratons; they are overlapped by continental-margin-arc and sedimentary-basin assemblages. The geologic history of the terranes and overlap assemblages is highly complex because of postaccretionary dismemberment and translation during strike-slip faulting that occurred subparallel to continental margins.We analyze the complex tectonics of this region by the following steps. (1) We assign tectonic environments for the orogenic collages from regional compilation and synthesis of stratigraphic and faunal data. The types of tectonic environments include cratonal, passive continental margin, metamorphosed continental margin, continental-margin arc, island arc, oceanic crust, seamount, ophiolite, accretionary wedge, subduction zone, turbidite basin, and metamorphic. (2) We make correlations between terranes. (3) We group coeval terranes into a single tectonic origin, for example, a single island arc or subduction zone. (4) We group igneous-arc and subduction- zone terranes, which are interpreted as being tectonically linked, into coeval, curvilinear arc/subduction-zone complexes. (5) We interpret the original positions of terranes, using geologic, faunal, and paleomagnetic data. (6) We construct the paths of tectonic migration. Six processes overlapping in time were responsible for most of the complexities of the collage of terranes and overlap assemblages around the Circum-North Pacific, as follows. (1) During the Late Proterozoic, Late Devonian, and Early Carboniferous, major periods of rifting occurred along the ancestral margins of present-day Northeast Asia and northwestern North America. The rifting resulted in the fragmentation of each continent and the formation of cratonal and passive continental-margin terranes that eventually migrated and accreted to other sites along the evolving margins of the original or adjacent continents. (2) From about the Late Triassic through the mid-Cretaceous, a succession of island arcs and tectonically paired subduction zones formed near the continental margins. (3) From about mainly the mid-Cretaceous through the present, a succession of igneous arcs and tectonically paired subduction zones formed along the continental margins. (4) From about the Jurassic to the present, oblique convergence and rotations caused orogenparallel sinistral and then dextral displacements within the upper-plate margins of cratons that have become Northeast Asia and North America. The oblique convergences and rotations resulted in the fragmentation, displacement, and duplication of formerly more nearly continuous arcs, subduction zones, and passive continental margins. These fragments were subsequently accreted along the expanding continental margins. (5) From the Early Jurassic through Tertiary, movement of the upper continental plates toward subduction zones resulted in strong plate coupling and accretion of the former island arcs and subduction zones to the continental margins. Accretions were accompanied and followed by crustal thickening, anatexis, metamorphism, and uplift. The accretions resulted in substantial growth of the North Asian and North American Continents. (6) During the middle and late Cenozoic, oblique to orthogonal convergence of the Pacifi c plate with present-day Alaska and Northeast Asia resulted in formation of the modern-day ring of volcanoes around the Circum-North Pacific. Oblique convergence between the Pacific plate and Alaska also resulted in major dextral-slip faulting in interior and southern Alaska and along the western p

Vertical zonation and distributions of calanoid copepods through the lower oxycline of the Arabian Sea oxygen minimum zone

NASA Astrophysics Data System (ADS)

Wishner, Karen F.; Gelfman, Celia; Gowing, Marcia M.; Outram, Dawn M.; Rapien, Mary; Williams, Rebecca L.

2008-08-01

This paper provides the first comprehensive analysis of calanoid copepod vertical zonation and community structure at midwater depths (300-1000 m) through the lower oxygen gradient (oxycline) (0.02 to ∼0.3 ml/L) of an oxygen minimum zone (OMZ). Feeding ecology was also analyzed. Zooplankton were collected with a double 1 m 2 MOCNESS plankton net in day and night vertically-stratified oblique tows from 1000 m to the surface at six stations during four seasons as part of the 1995 US Joint Global Ocean Flux Study (JGOFS) Arabian Sea project. The geographic comparison between a eutrophic more oxygenated onshore station and an offshore station with a strong OMZ served as a natural experiment to elucidate the influence of depth, oxygen concentration, season, food resources, and predators on the copepod distributions. Copepod species and species assemblages of the Arabian Sea OMZ differed in their spatial and vertical distributions relative to environmental and ecological characteristics of the water column and region. The extent and intensity of the oxycline at the lower boundary of the OMZ, and its spatial and temporal variability over the year of sampling, was an important factor affecting distributional patterns. Calanoid copepod species showed vertical zonation through the lower OMZ oxycline. Clustering analyses defined sample groups with similar copepod assemblages and species groups with similar distributions. No apparent diel vertical migration for either calanoid or non-calanoid copepods at these midwater depths was observed, but some species had age-related differences in vertical distributions. Subzones of the OMZ, termed the OMZ Core, the Lower Oxycline, and the Sub-Oxycline, had different copepod communities and ecological interactions. Major distributional and ecological changes were associated with surprisingly small oxygen gradients at low oxygen concentrations. The calanoid copepod community was most diverse in the most oxygenated environments (oxygen >0.14 ml/L), but the rank order of abundance of species was similar in the Lower Oxycline and Sub-Oxycline. Some species were absent or much scarcer in the OMZ Core. Two copepod species common in the Lower Oxycline were primarily detritivorous but showed dietary differences suggesting feeding specialization. The copepod Spinocalanus antarcticus fed primarily on components of the vertical particulate flux and suspended material, a less versatile diet than the co-occurring copepod Lucicutia grandis. Vertical zonation of copepod species through the lower OMZ oxycline is probably a complex interplay between physiological limitation by low oxygen, potential predator control, and potential food resources. Pelagic OMZ and oxycline communities, and their ecological interactions in the water column and with the benthos, may become even more widespread and significant in the future ocean, if global warming increases the extent and intensity of OMZs as predicted.

A Phase 2 Study of Concurrent Fludarabine and Rituximab for the Treatment of Marginal Zone Lymphomas

PubMed Central

Brown, Jennifer R; Friedberg, Jonathan W.; Feng, Yang; Scofield, Sarah; Phillips, Kimberly; Cin, Paola Dal; Joyce, Robin; Takvorian, Ronald W; Fisher, David C; Fisher, Richard I; Liesveld, Jane; Marquis, Diana; Neuberg, Donna; Freedman, Arnold S

2009-01-01

SUMMARY The marginal zone lymphomas are a recently defined group of related diseases likely arising from a common cell of origin, the marginal zone B cell. Data on therapy for subtypes other than gastric MALT has been largely limited to retrospective case series. We therefore undertook this prospective phase 2 study of fludarabine and rituximab for the treatment of marginal zone lymphomas. 26 patients were enrolled, 14 with nodal MZL, 8 with MALT lymphomas and 4 with splenic MZL; 81% were receiving initial systemic therapy. Only 58% (95% CI 37–77%) of patients completed the planned six cycles, due to significant hematologic, infectious and allergic toxicity. Four late toxic deaths occurred due to infections (15% (95% CI 4.3–35%), two related to delayed bone marrow aplasia and two related to MDS. Nonetheless, the ORR was 85% (95% CI 65–96%), with 54% CRs. The progression-free survival at 3.1 years of follow-up is 79.5% (95% CI, 63–96%). We conclude that although concurrent fludarabine and rituximab given at this dose and schedule is a highly effective regimen in the treatment of marginal zone lymphomas, the significant hematologic and infectious toxicity observed both during and after therapy is prohibitive in this patient population, emphasizing the need to study marginal zone lymphomas as a separate entity. PMID:19344412

Extranodal Marginal Zone B-cell Lymphoma of the Ocular Adnexa.

PubMed

Guffey Johnson, Jean; Terpak, Lauren A; Margo, Curtis E; Setoodeh, Reza

2016-04-01

Low-grade B-cell lymphomas located around the eye present unique challenges in diagnosis and treatment. Extranodal marginal zone B-cell lymphoma is the most common lymphoma of the ocular adnexa (conjunctiva, orbit, lacrimal gland, and eyelid). A systematic search of the relevant literature was performed. Material pertinent to the diagnosis, prognosis, pathogenesis, and treatment of extranodal marginal zone B-cell lymphoma of the ocular adnexa was identified, reviewed, and analyzed, focusing on management strategies for primary localized disease. The primary cause of extranodal marginal zone B-cell lymphoma of the ocular adnexa remains elusive, although an infectious agent is suspected. Radiotherapy is the most common initial treatment for localized disease. Initial treatment with chemotherapy, immunotherapy, and antibiotics has shown promising results, but the number of series is limited and controlled trials do not exist. Although the long-term outcome of localized extranodal marginal zone B-cell lymphoma of the ocular adnexa is good, optimal treatment remains a goal. The variation in rates of local and systemic relapse among treated stage 1E tumors suggests that critical factors affecting outcomes are not fully understood. Radiotherapy is the standard of care; at this time, the evidence is insufficient to recommend chemotherapy, immunotherapy, or antibiotics for initial treatment of extranodal marginal zone B-cell lymphoma localized to the ocular adnexa. Well-controlled comparative studies are needed.

Splenic marginal zone lymphoma.

PubMed

Piris, Miguel A; Onaindía, Arantza; Mollejo, Manuela

Splenic marginal zone lymphoma (SMZL) is an indolent small B-cell lymphoma involving the spleen and bone marrow characterized by a micronodular tumoral infiltration that replaces the preexisting lymphoid follicles and shows marginal zone differentiation as a distinctive finding. SMZL cases are characterized by prominent splenomegaly and bone marrow and peripheral blood infiltration. Cells in peripheral blood show a villous cytology. Bone marrow and peripheral blood characteristic features usually allow a diagnosis of SMZL to be performed. Mutational spectrum of SMZL identifies specific findings, such as 7q loss and NOTCH2 and KLF2 mutations, both genes related with marginal zone differentiation. There is a striking clinical variability in SMZL cases, dependent of the tumoral load and performance status. Specific molecular markers such as 7q loss, p53 loss/mutation, NOTCH2 and KLF2 mutations have been found to be associated with the clinical variability. Distinction from Monoclonal B-cell lymphocytosis with marginal zone phenotype is still an open issue that requires identification of precise and specific thresholds with clinical meaning. Copyright © 2016 Elsevier Ltd. All rights reserved.

Biogeochemical modelling of dissolved oxygen in a changing ocean.

PubMed

Andrews, Oliver; Buitenhuis, Erik; Le Quéré, Corinne; Suntharalingam, Parvadha

2017-09-13

Secular decreases in dissolved oxygen concentration have been observed within the tropical oxygen minimum zones (OMZs) and at mid- to high latitudes over the last approximately 50 years. Earth system model projections indicate that a reduction in the oxygen inventory of the global ocean, termed ocean deoxygenation, is a likely consequence of on-going anthropogenic warming. Current models are, however, unable to consistently reproduce the observed trends and variability of recent decades, particularly within the established tropical OMZs. Here, we conduct a series of targeted hindcast model simulations using a state-of-the-art global ocean biogeochemistry model in order to explore and review biases in model distributions of oceanic oxygen. We show that the largest magnitude of uncertainty is entrained into ocean oxygen response patterns due to model parametrization of p CO 2 -sensitive C : N ratios in carbon fixation and imposed atmospheric forcing data. Inclusion of a p CO 2 -sensitive C : N ratio drives historical oxygen depletion within the ocean interior due to increased organic carbon export and subsequent remineralization. Atmospheric forcing is shown to influence simulated interannual variability in ocean oxygen, particularly due to differences in imposed variability of wind stress and heat fluxes.This article is part of the themed issue 'Ocean ventilation and deoxygenation in a warming world'. © 2017 The Author(s).

Biogeochemical modelling of dissolved oxygen in a changing ocean

NASA Astrophysics Data System (ADS)

Andrews, Oliver; Buitenhuis, Erik; Le Quéré, Corinne; Suntharalingam, Parvadha

2017-08-01

Secular decreases in dissolved oxygen concentration have been observed within the tropical oxygen minimum zones (OMZs) and at mid- to high latitudes over the last approximately 50 years. Earth system model projections indicate that a reduction in the oxygen inventory of the global ocean, termed ocean deoxygenation, is a likely consequence of on-going anthropogenic warming. Current models are, however, unable to consistently reproduce the observed trends and variability of recent decades, particularly within the established tropical OMZs. Here, we conduct a series of targeted hindcast model simulations using a state-of-the-art global ocean biogeochemistry model in order to explore and review biases in model distributions of oceanic oxygen. We show that the largest magnitude of uncertainty is entrained into ocean oxygen response patterns due to model parametrization of pCO2-sensitive C : N ratios in carbon fixation and imposed atmospheric forcing data. Inclusion of a pCO2-sensitive C : N ratio drives historical oxygen depletion within the ocean interior due to increased organic carbon export and subsequent remineralization. Atmospheric forcing is shown to influence simulated interannual variability in ocean oxygen, particularly due to differences in imposed variability of wind stress and heat fluxes. This article is part of the themed issue 'Ocean ventilation and deoxygenation in a warming world'.

Automated design and optimization of flexible booster autopilots via linear programming. Volume 2: User's manual

NASA Technical Reports Server (NTRS)

Hauser, F. D.; Szollosi, G. D.; Lakin, W. S.

1972-01-01

COEBRA, the Computerized Optimization of Elastic Booster Autopilots, is an autopilot design program. The bulk of the design criteria is presented in the form of minimum allowed gain/phase stability margins. COEBRA has two optimization phases: (1) a phase to maximize stability margins; and (2) a phase to optimize structural bending moment load relief capability in the presence of minimum requirements on gain/phase stability margins.

3D mapping, hydrodynamics and modelling of the freshwater-brine mixing zone in salt flats similar to the Salar de Atacama (Chile)

NASA Astrophysics Data System (ADS)

Marazuela, M. A.; Vázquez-Suñé, E.; Custodio, E.; Palma, T.; García-Gil, A.; Ayora, C.

2018-06-01

Salt flat brines are a major source of minerals and especially lithium. Moreover, valuable wetlands with delicate ecologies are also commonly present at the margins of salt flats. Therefore, the efficient and sustainable exploitation of the brines they contain requires detailed knowledge about the hydrogeology of the system. A critical issue is the freshwater-brine mixing zone, which develops as a result of the mass balance between the recharged freshwater and the evaporating brine. The complex processes occurring in salt flats require a three-dimensional (3D) approach to assess the mixing zone geometry. In this study, a 3D map of the mixing zone in a salt flat is presented, using the Salar de Atacama as an example. This mapping procedure is proposed as the basis of computationally efficient three-dimensional numerical models, provided that the hydraulic heads of freshwater and mixed waters are corrected based on their density variations to convert them into brine heads. After this correction, the locations of lagoons and wetlands that are characteristic of the marginal zones of the salt flats coincide with the regional minimum water (brine) heads. The different morphologies of the mixing zone resulting from this 3D mapping have been interpreted using a two-dimensional (2D) flow and transport numerical model of an idealized cross-section of the mixing zone. The result of the model shows a slope of the mixing zone that is similar to that obtained by 3D mapping and lower than in previous models. To explain this geometry, the 2D model was used to evaluate the effects of heterogeneity in the mixing zone geometry. The higher the permeability of the upper aquifer is, the lower the slope and the shallower the mixing zone become. This occurs because most of the freshwater lateral recharge flows through the upper aquifer due to its much higher transmissivity, thus reducing the freshwater head. The presence of a few meters of highly permeable materials in the upper part of these hydrogeological systems, such as alluvial fans or karstified evaporites that are frequently associated with the salt flats, is enough to greatly modify the geometry of the saline interface.

Oxygen minimum zones (OMZs) in the modern ocean

NASA Astrophysics Data System (ADS)

Paulmier, A.; Ruiz-Pino, D.

2009-03-01

In the modern ocean, oxygen minimum zones (OMZs) are potential traces of a primitive ocean in which Archean bacteria lived and reduced chemical anomalies occurred. But OMZs are also keys to understanding the present unbalanced nitrogen cycle and the oceans’ role on atmospheric greenhouse control. OMZs are the main areas of nitrogen loss (as N 2, N 2O) to the atmosphere through denitrification and anammox, and could even indirectly mitigate the oceanic biological sequestration of CO 2. It was recently hypothesized that OMZs are going to spread in the coming decades as a consequence of global climate change. Despite an important OMZ role for the origin of marine life and for the biogeochemical cycles of carbon and nitrogen, there are some key questions on the structure of OMZs at a global scale. There is no agreement concerning the threshold in oxygen that defines an OMZ, and the extent of an OMZ is often evaluated by denitrification criteria which, at the same time, are O 2-dependent. Our work deals with the identification of each OMZ, the evaluation of its extent, volume and vertical structure, the determination of its seasonality or permanence and the comparison between OMZs and denitrification zones at a global scale. The co-existence in the OMZ of oxic (in its boundaries) and suboxic (even anoxic, in its core) conditions involves rather complex biogeochemical processes such as strong remineralization of the organic matter, removal of nitrate and release of nitrite. The quantitative OMZ analysis is focused on taking into account the whole water volume under the influence of an OMZ and adapted to the study of the specific low oxygen biogeochemical processes. A characterization of the entire structure for the main and most intense OMZs (O 2 < 20 μM reaching 1 μM in the core) is proposed based on a previously published CRIO criterion from the eastern South Pacific OMZ and including a large range of O 2 concentrations. Using the updated global WOA2005 O 2 climatology, the four known tropical OMZs in the open ocean have been described: the Eastern South Pacific and Eastern Tropical North Pacific, in the Pacific Ocean; the Arabian Sea and Bay of Bengal, in the Indian Ocean. Moreover, the Eastern Sub-Tropical North Pacific (25-52°N) has been identified as a lesser known permanent deep OMZ. Two additional seasonal OMZs at high latitude have also been identified: the West Bering Sea and the Gulf of Alaska. The total surface of the permanent OMZs is 30.4 millions of km 2 (∼8% of the total oceanic area), and the volume of the OMZ cores (10.3 millions of km 3) corresponds to a value ∼7 times higher than previous evaluations. The volume of the OMZ cores is about three times larger than that of the associated denitrification zone, here defined as NMZ (‘nitrate deficit or NDEF > 10 μM’ maximum zone). The larger OMZ, relative to the extent of denitrification zone, suggests that the unbalanced nitrogen cycle on the global scale could be more intense than previously recognized and that evaluation of the OMZ from denitrification could underestimate their extent.

Ibrutinib in Treating Relapsed or Refractory B-Cell Non-Hodgkin Lymphoma in Patients With HIV Infection

ClinicalTrials.gov

2015-08-18

Adult B Acute Lymphoblastic Leukemia; Chronic Lymphocytic Leukemia; Cutaneous B-Cell Non-Hodgkin Lymphoma; Extranodal Marginal Zone Lymphoma of Mucosa-Associated Lymphoid Tissue; HIV Infection; Intraocular Lymphoma; Multicentric Angiofollicular Lymphoid Hyperplasia; Nodal Marginal Zone Lymphoma; Recurrent Adult Acute Lymphoblastic Leukemia; Recurrent Adult Burkitt Lymphoma; Recurrent Adult Diffuse Large Cell Lymphoma; Recurrent Adult Diffuse Mixed Cell Lymphoma; Recurrent Adult Diffuse Small Cleaved Cell Lymphoma; Recurrent Adult Grade III Lymphomatoid Granulomatosis; Recurrent Adult Immunoblastic Lymphoma; Recurrent Adult Lymphoblastic Lymphoma; Recurrent Grade 1 Follicular Lymphoma; Recurrent Grade 2 Follicular Lymphoma; Recurrent Grade 3 Follicular Lymphoma; Recurrent Mantle Cell Lymphoma; Recurrent Marginal Zone Lymphoma; Recurrent Small Lymphocytic Lymphoma; Refractory Chronic Lymphocytic Leukemia; Refractory Hairy Cell Leukemia; Refractory Plasma Cell Myeloma; Small Intestinal Lymphoma; Splenic Marginal Zone Lymphoma; Testicular Lymphoma; Waldenstrom Macroglobulinemia

Genetically Modified T-cell Infusion Following Peripheral Blood Stem Cell Transplant in Treating Patients With Recurrent or High-Risk Non-Hodgkin Lymphoma

ClinicalTrials.gov

2018-01-26

Adult Grade III Lymphomatoid Granulomatosis; Cutaneous B-cell Non-Hodgkin Lymphoma; Extranodal Marginal Zone B-cell Lymphoma of Mucosa-associated Lymphoid Tissue; Intraocular Lymphoma; Nodal Marginal Zone B-cell Lymphoma; Post-transplant Lymphoproliferative Disorder; Recurrent Adult Burkitt Lymphoma; Recurrent Adult Diffuse Large Cell Lymphoma; Recurrent Adult Diffuse Mixed Cell Lymphoma; Recurrent Adult Diffuse Small Cleaved Cell Lymphoma; Recurrent Adult Grade III Lymphomatoid Granulomatosis; Recurrent Adult Immunoblastic Large Cell Lymphoma; Recurrent Adult Lymphoblastic Lymphoma; Recurrent Grade 1 Follicular Lymphoma; Recurrent Grade 2 Follicular Lymphoma; Recurrent Grade 3 Follicular Lymphoma; Recurrent Mantle Cell Lymphoma; Recurrent Marginal Zone Lymphoma; Recurrent Small Lymphocytic Lymphoma; Refractory Hairy Cell Leukemia; Small Intestine Lymphoma; Splenic Marginal Zone Lymphoma; Testicular Lymphoma; Waldenström Macroglobulinemia

Mohs micrographic surgery in dermatofibrosarcoma protuberans allows tumour clearance with smaller margins and greater preservation of healthy tissue compared with conventional surgery: a study of 74 primary cases.

PubMed

Serra-Guillén, C; Llombart, B; Nagore, E; Guillén, C; Requena, C; Traves, V; Kindem, S; Alcalá, R; Rivas, N; Sanmartín, O

2015-01-01

Dermatofibrosarcoma protuberans (DFSP) is an uncommon skin tumour with aggressive local growth. Whether DFSP should be treated with conventional surgery (CS) or Mohs micrographic surgery (MMS) has long been a topic of debate. To calculate, in a large series of DFSP treated by MMS, the minimum margin that would have been needed to achieve complete clearance by CS. Secondly, to calculate the percentage of healthy tissue that was preserved by MMS rather than CS with 2- and 3-cm margins. The minimum margin was calculated by measuring the largest distance from the visible edge of the tumour to the edge of the definitive surgical defect. Tumour and surgical defect areas for hypothetical CS with 2- and 3-cm margins were calculated using AutoCAD for Windows. A mean minimum margin of 1·34 cm was required to achieve complete clearance for the 74 tumours analysed. The mean percentages of skin spared using MMS rather than CS with 2- and 3-cm margins were 49·4% and 67·9%, respectively. MMS can achieve tumour clearance with smaller margins and greater preservation of healthy tissue than CS. © 2014 British Association of Dermatologists.

Middle to Late Eocene paleoenvironmental changes in a marine transgressive sequence from the northern Tethyan margin (Adelholzen, Germany)

PubMed Central

GEBHARDT, Holger; ĆORIĆ, Stjepan; DARGA, Robert; BRIGUGLIO, Antonino; SCHENK, Bettina; WERNER, Winfried; ANDERSEN, Nils; SAMES, Benjamin

2015-01-01

The northern Tethyan margin is a key region for determining environmental changes associated with the collision of continental and oceanic tectonic plates and Alpine orogeny. Herein we investigated Middle to Late Eocene neritic to bathyal sediments deposited during an interval of unstable climatic conditions. In order to quantify paleoenvironmental changes, we developed a detailed age model based on biozonations of planktic foraminifera, calcareous nannoplankton, and larger benthic foraminifera. The section at Adelholzen covers the almost complete Lutetian Stage (calcareous nannoplankton zones NP15a-16, planktic foraminifera zones E8-11, shallow benthic (foraminifera) zones SBZ13-15) and large parts of the Priabonian Stage (NP18-20, E14/15), while the intermediate Bartonian Stage (NP17) is completely missing. Foraminiferal, calcareous nannoplankton, and macrofossil assemblages were analyzed for changes in paleo-water depth, mixing and stratification, paleo-primary productivity (pPP), food supply, and bottom water oxygenation. Paleo-water depth estimates range from 50 m (middle neritic, early Lutetian) to nearly 500 m (upper bathyal, late Priabonian). The combination of assemblage composition, planktic and benthic foraminiferal accumulation rates, and derived parameters (carbon-flux to sea floor, pPP) enabled us to identify a series of distinct paleoceanographic events of at least regional significance. Such events are characterized by considerable changes in primary productivity or reduced bottom water ventilation. Calculated pPP-values indicate oligotrophic conditions throughout. PMID:26346423

Primary cutaneous marginal zone B-cell lymphoma: clinical and histological aspects.

PubMed

Khaled, A; Sassi, S; Fazaa, B; Ben Hassouna, J; Ben Romdhane, K; Kamoun, M R

2009-02-01

According to the WHO-EORTC classification of cutaneous lymphomas, primary cutaneous marginal zone B-cell lymphoma are now well characterized. We report here a case of primary cutaneous marginal zone B-cell lymphoma in a 51 year-old man in which the diagnosis was made using both histology and immunopathology. The patient had no remarkable medical history, no history of either acute inflammation or insect bite, and presented with a 5 cm solitary asymptomatic erythematous firm, multinodular and infiltrated plaque on the back for 12 months. Histological examination and immunohistochemical study of a cutaneous biopsy provided a differential diagnosis between B cell lymphoma and lymphocytoma cutis. Full body work up revealed no signs of extracutaneous dissemination. The patient underwent surgical excision of the nodule. Histological examination showed a histological and immunophenotyping profile typical of primary cutaneous marginal zone B-cell lymphoma. The lesion was completely excised with clear margins and no recurrence occurred after a 12 month-follow-up period. Primary cutaneous marginal zone B-cell lymphoma are low-grade lymphomas that have an indolent course and a high tendency to recur. They should be differentiated from lymphocytoma cutis and from the other types of cutaneous B cell lymphomas that have a different course and prognosis.

Temperature effects on metabolic rate of juvenile Pacific bluefin tuna Thunnus orientalis.

PubMed

Blank, Jason M; Morrissette, Jeffery M; Farwell, Charles J; Price, Matthew; Schallert, Robert J; Block, Barbara A

2007-12-01

Pacific bluefin tuna inhabit a wide range of thermal environments across the Pacific ocean. To examine how metabolism varies across this thermal range, we studied the effect of ambient water temperature on metabolic rate of juvenile Pacific bluefin tuna, Thunnus thynnus, swimming in a swim tunnel. Rate of oxygen consumption (MO2) was measured at ambient temperatures of 8-25 degrees C and swimming speeds of 0.75-1.75 body lengths (BL) s(-1). Pacific bluefin swimming at 1 BL s(-1) per second exhibited a U-shaped curve of metabolic rate vs ambient temperature, with a thermal minimum zone between 15 degrees C to 20 degrees C. Minimum MO2 of 175+/-29 mg kg(-1) h(-1) was recorded at 15 degrees C, while both cold and warm temperatures resulted in increased metabolic rates of 331+/-62 mg kg(-1) h(-1) at 8 degrees C and 256+/-19 mg kg(-1) h(-1) at 25 degrees C. Tailbeat frequencies were negatively correlated with ambient temperature. Additional experiments indicated that the increase in MO2 at low temperature occurred only at low swimming speeds. Ambient water temperature data from electronic tags implanted in wild fish indicate that Pacific bluefin of similar size to the experimental fish used in the swim tunnel spend most of their time in ambient temperatures in the metabolic thermal minimum zone.

Patterns of deoxygenation: sensitivity to natural and anthropogenic drivers

NASA Astrophysics Data System (ADS)

Oschlies, Andreas; Duteil, Olaf; Getzlaff, Julia; Koeve, Wolfgang; Landolfi, Angela; Schmidtko, Sunke

2017-08-01

Observational estimates and numerical models both indicate a significant overall decline in marine oxygen levels over the past few decades. Spatial patterns of oxygen change, however, differ considerably between observed and modelled estimates. Particularly in the tropical thermocline that hosts open-ocean oxygen minimum zones, observations indicate a general oxygen decline, whereas most of the state-of-the-art models simulate increasing oxygen levels. Possible reasons for the apparent model-data discrepancies are examined. In order to attribute observed historical variations in oxygen levels, we here study mechanisms of changes in oxygen supply and consumption with sensitivity model simulations. Specifically, the role of equatorial jets, of lateral and diapycnal mixing processes, of changes in the wind-driven circulation and atmospheric nutrient supply, and of some poorly constrained biogeochemical processes are investigated. Predominantly wind-driven changes in the low-latitude oceanic ventilation are identified as a possible factor contributing to observed oxygen changes in the low-latitude thermocline during the past decades, while the potential role of biogeochemical processes remains difficult to constrain. We discuss implications for the attribution of observed oxygen changes to anthropogenic impacts and research priorities that may help to improve our mechanistic understanding of oxygen changes and the quality of projections into a changing future. This article is part of the themed issue 'Ocean ventilation and deoxygenation in a warming world'.

Widespread gas hydrate instability on the upper U.S. Beaufort margin

NASA Astrophysics Data System (ADS)

Phrampus, Benjamin J.; Hornbach, Matthew J.; Ruppel, Carolyn D.; Hart, Patrick E.

2014-12-01

The most climate-sensitive methane hydrate deposits occur on upper continental slopes at depths close to the minimum pressure and maximum temperature for gas hydrate stability. At these water depths, small perturbations in intermediate ocean water temperatures can lead to gas hydrate dissociation. The Arctic Ocean has experienced more dramatic warming than lower latitudes, but observational data have not been used to study the interplay between upper slope gas hydrates and warming ocean waters. Here we use (a) legacy seismic data that constrain upper slope gas hydrate distributions on the U.S. Beaufort Sea margin, (b) Alaskan North Slope borehole data and offshore thermal gradients determined from gas hydrate stability zone thickness to infer regional heat flow, and (c) 1088 direct measurements to characterize multidecadal intermediate ocean warming in the U.S. Beaufort Sea. Combining these data with a three-dimensional thermal model shows that the observed gas hydrate stability zone is too deep by 100 to 250 m. The disparity can be partially attributed to several processes, but the most important is the reequilibration (thinning) of gas hydrates in response to significant (~0.5°C at 2σ certainty) warming of intermediate ocean temperatures over 39 years in a depth range that brackets the upper slope extent of the gas hydrate stability zone. Even in the absence of additional ocean warming, 0.44 to 2.2 Gt of methane could be released from reequilibrating gas hydrates into the sediments underlying an area of ~5-7.5 × 103 km2 on the U.S. Beaufort Sea upper slope during the next century.

14 CFR 121.335 - Equipment standards.

Code of Federal Regulations, 2011 CFR

2011-01-01

... Equipment standards. (a) Reciprocating engine powered airplanes. The oxygen apparatus, the minimum rates of oxygen flow, and the supply of oxygen necessary to comply with § 121.327 must meet the standards...) Turbine engine powered airplanes. The oxygen apparatus, the minimum rate of oxygen flow, and the supply of...

14 CFR 121.335 - Equipment standards.

Code of Federal Regulations, 2013 CFR

2013-01-01

... Equipment standards. (a) Reciprocating engine powered airplanes. The oxygen apparatus, the minimum rates of oxygen flow, and the supply of oxygen necessary to comply with § 121.327 must meet the standards...) Turbine engine powered airplanes. The oxygen apparatus, the minimum rate of oxygen flow, and the supply of...

14 CFR 121.335 - Equipment standards.

Code of Federal Regulations, 2012 CFR

2012-01-01

... Equipment standards. (a) Reciprocating engine powered airplanes. The oxygen apparatus, the minimum rates of oxygen flow, and the supply of oxygen necessary to comply with § 121.327 must meet the standards...) Turbine engine powered airplanes. The oxygen apparatus, the minimum rate of oxygen flow, and the supply of...

14 CFR 121.335 - Equipment standards.

Code of Federal Regulations, 2010 CFR

2010-01-01

... Equipment standards. (a) Reciprocating engine powered airplanes. The oxygen apparatus, the minimum rates of oxygen flow, and the supply of oxygen necessary to comply with § 121.327 must meet the standards...) Turbine engine powered airplanes. The oxygen apparatus, the minimum rate of oxygen flow, and the supply of...

14 CFR 121.335 - Equipment standards.

Code of Federal Regulations, 2014 CFR

2014-01-01

... Equipment standards. (a) Reciprocating engine powered airplanes. The oxygen apparatus, the minimum rates of oxygen flow, and the supply of oxygen necessary to comply with § 121.327 must meet the standards...) Turbine engine powered airplanes. The oxygen apparatus, the minimum rate of oxygen flow, and the supply of...

The Kinematics of Central American Fore-Arc Motion in Nicaragua: Geodetic, Geophysical and Geologic Study of Magma-Tectonic Interactions

NASA Astrophysics Data System (ADS)

La Femina, P. C.; Geirsson, H.; Saballos, A.; Mattioli, G. S.

2017-12-01

A long-standing paradigm in plate tectonics is that oblique convergence results in strain partitioning and the formation of migrating fore-arc terranes accommodated on margin-parallel strike-slip faults within or in close proximity to active volcanic arcs (e.g., the Sumatran fault). Some convergent margins, however, are segmented by margin-normal faults and margin-parallel shear is accommodated by motion on these faults and by vertical axis block rotation. Furthermore, geologic and geophysical observations of active and extinct margins where strain partitioning has occurred, indicate the emplacement of magmas within the shear zones or extensional step-overs. Characterizing the mechanism of accommodation is important for understanding short-term (decadal) seismogenesis, and long-term (millions of years) fore-arc migration, and the formation of continental lithosphere. We investigate the geometry and kinematics of Quaternary faulting and magmatism along the Nicaraguan convergent margin, where historical upper crustal earthquakes have been located on margin-normal, strike-slip faults within the fore arc and arc. Using new GPS time series, other geophysical and geologic data, we: 1) determine the location of the maximum gradient in forearc motion; 2) estimate displacement rates on margin-normal faults; and 3) constrain the geometric moment rate for the fault system. We find that: 1) forearc motion is 11 mm a-1; 2) deformation is accommodated within the active volcanic arc; and 3) that margin-normal faults can have rates of 10 mm a-1 in agreement with geologic estimates from paleoseismology. The minimum geometric moment rate for the margin-normal fault system is 2.62x107 m3 yr-1, whereas the geometric moment rate for historical (1931-2006) earthquakes is 1.01x107 m3/yr. The discrepancy between fore-arc migration and historical seismicity may be due to aseismic accommodation of fore-arc motion by magmatic intrusion along north-trending volcanic alignments within the volcanic arc.

CPI-613, Bendamustine Hydrochloride, and Rituximab in Treating Patients With Relapsed or Refractory B-Cell Non-Hodgkin Lymphoma

ClinicalTrials.gov

2017-05-25

B-cell Adult Acute Lymphoblastic Leukemia; B-cell Chronic Lymphocytic Leukemia; Cutaneous B-cell Non-Hodgkin Lymphoma; Extranodal Marginal Zone B-cell Lymphoma of Mucosa-associated Lymphoid Tissue; Intraocular Lymphoma; Nodal Marginal Zone B-cell Lymphoma; Recurrent Adult Acute Lymphoblastic Leukemia; Recurrent Adult Burkitt Lymphoma; Recurrent Adult Diffuse Large Cell Lymphoma; Recurrent Adult Diffuse Mixed Cell Lymphoma; Recurrent Adult Diffuse Small Cleaved Cell Lymphoma; Recurrent Adult Grade III Lymphomatoid Granulomatosis; Recurrent Adult Immunoblastic Large Cell Lymphoma; Recurrent Adult Lymphoblastic Lymphoma; Recurrent Grade 1 Follicular Lymphoma; Recurrent Grade 2 Follicular Lymphoma; Recurrent Grade 3 Follicular Lymphoma; Recurrent Mantle Cell Lymphoma; Recurrent Marginal Zone Lymphoma; Recurrent Mycosis Fungoides/Sezary Syndrome; Recurrent Small Lymphocytic Lymphoma; Refractory Chronic Lymphocytic Leukemia; Refractory Hairy Cell Leukemia; Small Intestine Lymphoma; Splenic Marginal Zone Lymphoma; Testicular Lymphoma; Waldenström Macroglobulinemia

Species-specific patterns of diel migration into the Oxygen Minimum Zone by euphausiids in the Humboldt Current Ecosystem

NASA Astrophysics Data System (ADS)

Antezana, Tarsicio

2009-12-01

A series of stratified bongo net samples taken over a 2 day period at ca. 18°S, about 20 nm off the coast of Peru, South America, suggest species-specific patterns of diel vertical migration into the Oxygen Minimum Zone (OMZ) of the Humboldt Current Ecosystem (HCE). The OMZ was the most dramatic feature of the water column and seemed to determine the extent of migration: Stylocheiron affine migrated only to the shallow oxycline; whereas Euphausia mucronata, Euphausia eximia, Euphausia distinguenda and Euphausia tenera migrated to the core of the OMZ; and Nematoscelis gracilis to beneath the core of the OMZ. Some differences were also found in the timing and duration of the ascent and descent, and residence times in shallow and deep layers. E. mucronata, N. gracilis and E. distinguenda displayed a normal descent during sunrise, and ascent during sunset. E. eximia and E. tenera also descended during sunrise but seemed to begin their ascent earlier in the afternoon and consequently shortened their deep residence times. S. affine showed the most extended residence times at the shallow layer and the shortest vertical displacement. Day and night vertical stratification and differences in the timing of migration into and out of the OMZ of the HCE suggest a community structure based on habitat partitioning whereby species avoided co-occurrence in time and space. Species-specific patterns of vertical stratification and migratory chronology are examined with regard to body and gill sizes, feeding adaptations of euphausiids, and potential food resources at the OMZ.

Integrating biogeochemistry with multiomic sequence information in a model oxygen minimum zone

PubMed Central

Hawley, Alyse K.; Katsev, Sergei; Torres-Beltran, Monica; Bhatia, Maya P.; Kheirandish, Sam; Michiels, Céline C.; Capelle, David; Lavik, Gaute; Doebeli, Michael; Crowe, Sean A.; Hallam, Steven J.

2016-01-01

Microorganisms are the most abundant lifeform on Earth, mediating global fluxes of matter and energy. Over the past decade, high-throughput molecular techniques generating multiomic sequence information (DNA, mRNA, and protein) have transformed our perception of this microcosmos, conceptually linking microorganisms at the individual, population, and community levels to a wide range of ecosystem functions and services. Here, we develop a biogeochemical model that describes metabolic coupling along the redox gradient in Saanich Inlet—a seasonally anoxic fjord with biogeochemistry analogous to oxygen minimum zones (OMZs). The model reproduces measured biogeochemical process rates as well as DNA, mRNA, and protein concentration profiles across the redox gradient. Simulations make predictions about the role of ubiquitous OMZ microorganisms in mediating carbon, nitrogen, and sulfur cycling. For example, nitrite “leakage” during incomplete sulfide-driven denitrification by SUP05 Gammaproteobacteria is predicted to support inorganic carbon fixation and intense nitrogen loss via anaerobic ammonium oxidation. This coupling creates a metabolic niche for nitrous oxide reduction that completes denitrification by currently unidentified community members. These results quantitatively improve previous conceptual models describing microbial metabolic networks in OMZs. Beyond OMZ-specific predictions, model results indicate that geochemical fluxes are robust indicators of microbial community structure and reciprocally, that gene abundances and geochemical conditions largely determine gene expression patterns. The integration of real observational data, including geochemical profiles and process rate measurements as well as metagenomic, metatranscriptomic and metaproteomic sequence data, into a biogeochemical model, as shown here, enables holistic insight into the microbial metabolic network driving nutrient and energy flow at ecosystem scales. PMID:27655888

Integrating biogeochemistry with multiomic sequence information in a model oxygen minimum zone.

PubMed

Louca, Stilianos; Hawley, Alyse K; Katsev, Sergei; Torres-Beltran, Monica; Bhatia, Maya P; Kheirandish, Sam; Michiels, Céline C; Capelle, David; Lavik, Gaute; Doebeli, Michael; Crowe, Sean A; Hallam, Steven J

2016-10-04

Microorganisms are the most abundant lifeform on Earth, mediating global fluxes of matter and energy. Over the past decade, high-throughput molecular techniques generating multiomic sequence information (DNA, mRNA, and protein) have transformed our perception of this microcosmos, conceptually linking microorganisms at the individual, population, and community levels to a wide range of ecosystem functions and services. Here, we develop a biogeochemical model that describes metabolic coupling along the redox gradient in Saanich Inlet-a seasonally anoxic fjord with biogeochemistry analogous to oxygen minimum zones (OMZs). The model reproduces measured biogeochemical process rates as well as DNA, mRNA, and protein concentration profiles across the redox gradient. Simulations make predictions about the role of ubiquitous OMZ microorganisms in mediating carbon, nitrogen, and sulfur cycling. For example, nitrite "leakage" during incomplete sulfide-driven denitrification by SUP05 Gammaproteobacteria is predicted to support inorganic carbon fixation and intense nitrogen loss via anaerobic ammonium oxidation. This coupling creates a metabolic niche for nitrous oxide reduction that completes denitrification by currently unidentified community members. These results quantitatively improve previous conceptual models describing microbial metabolic networks in OMZs. Beyond OMZ-specific predictions, model results indicate that geochemical fluxes are robust indicators of microbial community structure and reciprocally, that gene abundances and geochemical conditions largely determine gene expression patterns. The integration of real observational data, including geochemical profiles and process rate measurements as well as metagenomic, metatranscriptomic and metaproteomic sequence data, into a biogeochemical model, as shown here, enables holistic insight into the microbial metabolic network driving nutrient and energy flow at ecosystem scales.

Abundance and phylogenetic identity of archaeoplankton in the permanent oxygen minimum zone of the eastern tropical South Pacific.

PubMed

Belmar, Lucy; Molina, Verónica; Ulloa, Osvaldo

2011-11-01

We assessed the abundance and molecular phylogeny of archaeoplankton in the oxygen minimum zone (OMZ) of the eastern tropical South Pacific, using specific-probe hybridization and phylogenetic analysis of the SSU-rRNA gene. Euryarchaea from Marine Group-II (MG-II) were most abundant in the surface oxic layer, representing 4.0±2.0% of the total picoplankton, while crenarchaea from Group I.1a (G-I.1a) peaked at the oxyclines, with a relative abundance of 8.1±4.3% (upper oxycline). In most of the stations, the abundance of both the groups decreased at the core of the OMZ, where a secondary maximum in cell density is commonly observed. The majority of the phylotypes affiliated with one of three groups: MG-II, euryarchaeal Marine Group-III (MG-III) and G-I.1a (75.9%, 12.8% and 10.3%, respectively). While MG-II phylotypes were found throughout the water column and G-I.1a ones were predominantly found within the oxyclines, MG-III phylotypes came almost exclusively from the OMZ core. Higher archaeal richness was found within the OMZ, with some of the exclusive lineages grouping with sequences from the deep ocean and hydrothermal vents. Moreover, G-I.1a sequences from the OMZ grouped into a different subcluster from the aerobic ammonium-oxidizer Nitrosopumilus maritimus. Thus, the community structure of archaeoplankton in OMZs is rich and distinct, with G-I.1a members particularly prominent at the oxyclines. © 2011 Federation of European Microbiological Societies. Published by Blackwell Publishing Ltd. All rights reserved.

Quantifying the sources and sinks of nitrite in the oxygen minimum zone of the Eastern Tropical South Pacific

NASA Astrophysics Data System (ADS)

Ji, Qixing; Widner, Brittany; Jayakumar, Amal; Ward, Bess; Mulholland, Margaret

2017-04-01

In coastal upwelling regions, high surface productivity leads to high export and intense remineralization consuming oxygen. This, in combination with slow ventilation, creates oxygen minimum zones (OMZ) in eastern boundary regions of the ocean, such as the one off the Peruvian coast in the Eastern Tropical South Pacific. The OMZ is characterized by a layer of high nitrite concentration coinciding with water column anoxia. Sharp oxygen gradients are located above and below the anoxic layer (upper and lower oxyclines). Thus, the OMZ harbors diverse microbial metabolisms, several of which involve the production and consumption of nitrite. The sources of nitrite are ammonium oxidation and nitrate reduction. The sinks of nitrite include anaerobic ammonium oxidation (anammox), canonical denitrification and nitrite oxidation to nitrate. To quantify the sources and sinks of nitrite in the Peruvian OMZ, incubation experiments with 15N-labeled substrates (ammonium, nitrite and nitrate) were conducted on a research cruise in January 2015. The direct measurements of instantaneous nitrite production and consumption rates were compared with ambient nitrite concentrations to evaluate the turnover rate of nitrite in the OMZ. The distribution of nitrite in the water column showed a two-peak structure. A primary nitrite maximum (up to 0.5 μM) was located in the upper oxycline. A secondary nitrite maximum (up to 10 μM) was found in the anoxic layer. A nitrite concentration minimum occurred at the oxic-anoxic interface just below the upper oxycline. For the sources of nitrite, highest rates of ammonium oxidation and nitrate reduction were detected in the upper oxycline, where both nitrite and oxygen concentrations were low. Lower rates of nitrite production were detected within the layer of secondary nitrite maximum. For the sinks of nitrite, the rates of anammox, denitrification and nitrite oxidation were the highest just below the oxic-anoxic interface. Low nitrite consumption rates were also detected within the layer of the secondary nitrite maximum. The imbalances between nitrite production and consumption rates help to explain the distribution of nitrite in the water column. The primary nitrite maximum in the upper oxycline is consistent with ammonium oxidation exceeding nitrite oxidation. Nitrite consumption rates exceeding rates of nitrite production result in the low nitrite concentration at the oxic-anoxic interface. Within the secondary nitrite maximum in the anoxic layer, production and consumption of nitrite are equivalent within measurement error. These low turnover rates suggest the stability of the nitrite pool in the secondary nitrite maximum over long time scales (decades to millennial). These data could be implemented into biogeochemical models to decipher the origin and the evolution of nitrite distribution in the OMZs.

The jumbo squid, Dosidicus gigas (Ommastrephidae), living in oxygen minimum zones I: Oxygen consumption rates and critical oxygen partial pressures

NASA Astrophysics Data System (ADS)

Trueblood, Lloyd A.; Seibel, Brad A.

2013-10-01

Dosidicus gigas is a large, metabolically active, epipelagic squid known to undertake diel vertical migrations across a large temperature and oxygen gradient in the Eastern Pacific. Hypoxia is known to cause metabolic suppression in D. gigas. However, the precise oxygen level at which metabolic suppression sets in is unknown. Here we describe a novel ship-board swim tunnel respirometer that was used to measure metabolic rates and critical oxygen partial pressures (Pcrit) for adult squids (2-7kg). Metabolic rate measurements were validated by comparison to the activity of the Krebs cycle enzyme, citrate synthase, in mantle muscle tissue (2-17kg). We recorded a mean routine metabolic rate of 5.91μmolg-1h-1 at 10°C and 12.62μmolg-1h-1 at 20°C. A temperature coefficient, Q10, of 2.1 was calculated. D. gigas had Pcrits of 1.6 and 3.8kPa at 10 and 20°C, respectively. Oxygen consumption rate (MO2) varied with body mass (M) according to MO2=11.57M-0.12±0.03 at 10°C. Citrate synthase activity varied with body mass according to Y=9.32M-0.19±0.02.

Early benthic successional processes at implanted substrates in Barkley Submarine Canyon affected by a permanent oxygen minimum zone

NASA Astrophysics Data System (ADS)

Cabrera De Leo, F.; Smith, C. R.; Levin, L. A.; Fleury, A.; Aguzzi, J.

2016-02-01

With the advent of cabled observatories scientists are now able to have a permanent presence in the deep-seafloor, being able to reveal previously unseen faunal behavior as well as to track long-term changes in biodiversity and ecosystem function. The Ocean Networks Canada 800-km loop seafloor observatory array (NEPTUNE) located in the NE Pacific has instruments measuring a variety of environmental variables ranging from temperature, salinity, oxygen, currents, turbidity, fluorescence, etc, at multiple and very high temporal resolution scales. High-definition video cameras also monitor benthic communities in multiple deep-sea habitats, all at some extent influenced by an oxygen minimum zone (OMZ). In the present study, whale-bone and wood substrates are being used to evaluate bathymetric, regional and inter-basin variations in benthic biodiversity and connectivity, as well as interactions between biodiversity and ecosystem function. In May of 2014 three humpback whale (Megaptera novaeangliae) rib sections, one 20x20x10 cm block of Douglas Fir (Pseudotsunga meniziesii), and a 30x30x30 block of authigenic carbonate were placed with the use of an ROV at 890 m depth inside Barkley Canyon. The substrate packages were placed concentrically, 45-cm away from a HD video camera. Five-minute videos were captured at 2-hr intervals. Preliminary data analysis from 8 months of deployment showed very distinct early community succession patterns between the two organic substrates (bones and wood) and the authigenic carbonate. Whalebones and wood showed amphipod (Orchomene obtusa) abundance peaks mostly contained during the first 60 days after deployment; Amphipod peak abundance rapid decline coincides with rapid growth of bacterial mat on whalebone and wood surfaces. Low abundance, species richness and substrate degradation rates are in agreement with a low oxygen environment of the OMZ in the canyon. Despite the early stages of data analysis, this experiment demonstrates how cabled observatories are suited for conducting experiments in the deep-sea, where researchers gain full control of observation parameters and benefit from high-frequency measuring of environmental fluctuation.

Metabolic physiology of the Humboldt squid, Dosidicus gigas: Implications for vertical migration in a pronounced oxygen minimum zone

NASA Astrophysics Data System (ADS)

Rosa, Rui; Seibel, Brad A.

2010-07-01

The Humboldt (or jumbo) squid, Dosidicus gigas, is an active predator endemic to the Eastern Pacific that undergoes diel vertical migrations into a pronounced oxygen minimum layer (OML). Here, we investigate the physiological mechanisms that facilitate these migrations and assess the associated costs and benefits. Exposure to hypoxic conditions equivalent to those found in the OML (∼10 μM O 2 at 10 °C) led to a significant reduction in the squid’s routine metabolic rate (RMR), from 8.9 to 1.6 μmol O 2 g -1 h -1 ( p < 0.05), and a concomitant increase in mantle muscle octopine levels (from 0.50 to 5.24 μmol g -1 tissue, p < 0.05). Enhanced glycolitic ATP production accounted for only 7.0% and 2.8% at 10 °C and 20 °C, respectively, of the energy deficit that resulted from the decline in aerobic respiration. The observed metabolic suppression presumably extends survival time in the OML by conserving the finite stores of fermentable substrate and avoiding the accumulation of the deleterious anaerobic end products in the tissues. RMR increased significantly with temperature ( p < 0.05), from 8.9 (at 10 °C) to 49.85 μmol O 2 g -1 h -1 (at 25 °C) which yielded a Q10 of 2.0 between 10 and 20 °C and 7.9 between 20 and 25 °C ( p < 0.05). These results suggest that 25 °C, although within the normal surface temperature range in the Gulf of California, is outside this species’ normal temperature range. By following the scattering layer into oxygen-enriched shallow water at night, D. gigas may repay any oxygen debt accumulated during the daytime. The dive to deeper water may minimize exposure to stressful surface temperatures when most prey have migrated to depth during the daytime. The physiological and ecological strategies demonstrated here may have facilitated the recent range expansion of this species into northern waters where expanding hypoxic zones prohibit competing top predators.

Effects of latitudinal changes in the oxygen minimum zone of the northeast Pacific on the distribution of bathyal benthic decapod crustaceans

NASA Astrophysics Data System (ADS)

Papiol, Vanesa; Hendrickx, Michel E.; Serrano, David

2017-03-01

The presence of an Oxygen Minimum Zone (OMZ) is one of the major characteristics of the eastern Pacific. The OMZ changes strongly adjacent to Mexico in its thickness and intensity. The ecological impacts of those changes were studied by examining the community structures of bathyal benthic and bentho-pelagic decapod crustaceans, and their oceanographic contexts, on the Mexican Pacific slope along a wide latitudinal range (16-32°N). Decapod crustaceans were collected with a benthic sledge from 48 stations between 865 and 2165 m in three main areas: offshore of northern Baja California (NBC), off southern Baja California (SBC) and in the southern Mexican Pacific (SMP). Physical-chemical parameters were measured in the water column, and sediment composition was analyzed for each station. The narrowing and weakening of the OMZ north of ca. 26°N was confirmed. Water with dissolved oxygen <0.5 ml l-1 occupied a stratum of 1231 m in the SMP vs. only 664 m off NBC. The strongest changes coincided with a region of surface, subsurface and intermediate water mass transitions, where less saline waters from the north extended to depths of ca. 1000 m. Sand proportions were higher in sediments to the south, whereas silt dominated offshore of NBC. A strong latitudinal shift in decapod community composition and bathymetric distribution occurred from off SBC to off NBC, coinciding with changes in oceanographic conditions. The dominant genera of decapod crustaceans at slope depths were cognate to those dominating slope areas in other tropical and subtropical regions of the world. In the SMP and off SBC, large aggregations of organisms were observed at 900-1300 m, with a sharp decrease in abundance at greater depth. Off NBC, the density of organisms was intermediate at all depths. The combined effects of dissolved oxygen concentration and characteristics of water masses affected the distribution of organisms. The faunal patterns were also related with sediment grain size.

14 CFR 23.1443 - Minimum mass flow of supplemental oxygen.

Code of Federal Regulations, 2010 CFR

2010-01-01

... discretion. (c) If first-aid oxygen equipment is installed, the minimum mass flow of oxygen to each user may... upon an average flow rate of 3 liters per minute per person for whom first-aid oxygen is required. (d...

Late Holocene activity of the Dead Sea Transform revealed in 3D palaeoseismic trenches on the Jordan Gorge segment [rapid communication

NASA Astrophysics Data System (ADS)

Marco, Shmuel; Rockwell, Thomas K.; Heimann, Ariel; Frieslander, Uri; Agnon, Amotz

2005-05-01

Three-dimensional excavations of buried stream channels that have been displaced by the Jordan Fault, the primary strand of the Dead Sea fault zone in northern Israel, demonstrate that late Holocene slip has been primarily strike-slip at a minimum rate of 3 mm/yr. The palaeoseismic study was carried out in the Bet-Zayda Valley, the delta of the Jordan River at the north shore of the Sea of Galilee. The site was chosen where a north-striking scarp with up to 1-m vertical expression crosses the flat valley. One group of trench excavations was located where a small stream crosses the scarp. The active stream, which is incised into the scarp, is not offset by the fault. However we found two palaeo channels about 2 m below the surface offset sinistrally 2.7±0.2 m by the fault and two younger nested channels offset 0.5±0.05 m. Based on radiocarbon dates we attribute the last 0.5 m rupture to the earthquake of October 30, 1759. The older offset of 2.2 m most probably occurred in the earthquakes of May 20, 1202. These two events correlate with the findings at Ateret, about 12 km north of Bet-Zayda, where the 1202 earthquake produced 1.6 m of lateral displacement in E-W-striking defence walls of a Crusader castle, and an Ottoman mosque was offset 0.5 m in the earthquake of 1759. In the second group of trenches some 60 m farther south we found another offset channel. Its northern margin is displaced 15 m sinistrally whereas the southern margin shows only 9 m of sinistral offset. The dip slip component is 1.2 m, west side down. The different amounts of margin offset can be explained by erosion of the southern margin during the first 6 m of displacement. Additional slip of 9 m accrued after the stream had been abandoned and buried by a 2-m-thick lacustrine clay layers. Radiocarbon dates on organic residue provide the age control which indicates that the 15 m of slip has accrued over the past 5 kyr, yielding a short-term slip rate of 3 mm/yr for the late Holocene. It is possible that our study covers only part of the fault zone, hence we regard this mean slip rate to be a minimum for the DST. Based on other palaeoseismic studies the best estimate for Quaternary slip rate is 4±1 mm/yr.

Oblimersen and Gemcitabine in Treating Patients With Advanced Solid Tumor or Lymphoma

ClinicalTrials.gov

2013-01-24

Extranodal Marginal Zone B-cell Lymphoma of Mucosa-associated Lymphoid Tissue; Nodal Marginal Zone B-cell Lymphoma; Recurrent Adult Burkitt Lymphoma; Recurrent Adult Diffuse Large Cell Lymphoma; Recurrent Adult Diffuse Mixed Cell Lymphoma; Recurrent Adult Diffuse Small Cleaved Cell Lymphoma; Recurrent Adult Hodgkin Lymphoma; Recurrent Adult Immunoblastic Large Cell Lymphoma; Recurrent Adult Lymphoblastic Lymphoma; Recurrent Adult T-cell Leukemia/Lymphoma; Recurrent Cutaneous T-cell Non-Hodgkin Lymphoma; Recurrent Grade 1 Follicular Lymphoma; Recurrent Grade 2 Follicular Lymphoma; Recurrent Grade 3 Follicular Lymphoma; Recurrent Mantle Cell Lymphoma; Recurrent Marginal Zone Lymphoma; Recurrent Small Lymphocytic Lymphoma; Splenic Marginal Zone Lymphoma; Stage IV Adult Burkitt Lymphoma; Stage IV Adult Diffuse Large Cell Lymphoma; Stage IV Adult Diffuse Mixed Cell Lymphoma; Stage IV Adult Diffuse Small Cleaved Cell Lymphoma; Stage IV Adult Hodgkin Lymphoma; Stage IV Adult Immunoblastic Large Cell Lymphoma; Stage IV Adult Lymphoblastic Lymphoma; Stage IV Adult T-cell Leukemia/Lymphoma; Stage IV Cutaneous T-cell Non-Hodgkin Lymphoma; Stage IV Grade 1 Follicular Lymphoma; Stage IV Grade 2 Follicular Lymphoma; Stage IV Grade 3 Follicular Lymphoma; Stage IV Mantle Cell Lymphoma; Stage IV Marginal Zone Lymphoma; Stage IV Small Lymphocytic Lymphoma; Unspecified Adult Solid Tumor, Protocol Specific

Ground water stratification and delivery of nitrate to an incised stream under varying flow conditions.

PubMed

Böhlke, J K; O'Connell, Michael E; Prestegaard, Karen L

2007-01-01

Ground water processes affecting seasonal variations of surface water nitrate concentrations were investigated in an incised first-order stream in an agricultural watershed with a riparian forest in the coastal plain of Maryland. Aquifer characteristics including sediment stratigraphy, geochemistry, and hydraulic properties were examined in combination with chemical and isotopic analyses of ground water, macropore discharge, and stream water. The ground water flow system exhibits vertical stratification of hydraulic properties and redox conditions, with sub-horizontal boundaries that extend beneath the field and adjacent riparian forest. Below the minimum water table position, ground water age gradients indicate low recharge rates (2-5 cm yr(-1)) and long residence times (years to decades), whereas the transient ground water wedge between the maximum and minimum water table positions has a relatively short residence time (months to years), partly because of an upward increase in hydraulic conductivity. Oxygen reduction and denitrification in recharging ground waters are coupled with pyrite oxidation near the minimum water table elevation in a mottled weathering zone in Tertiary marine glauconitic sediments. The incised stream had high nitrate concentrations during high flow conditions when much of the ground water was transmitted rapidly across the riparian zone in a shallow oxic aquifer wedge with abundant outflow macropores, and low nitrate concentrations during low flow conditions when the oxic wedge was smaller and stream discharge was dominated by upwelling from the deeper denitrified parts of the aquifer. Results from this and similar studies illustrate the importance of near-stream geomorphology and subsurface geology as controls of riparian zone function and delivery of nitrate to streams in agricultural watersheds.

Ground water stratification and delivery of nitrate to an incised stream under varying flow conditions

USGS Publications Warehouse

Böhlke, J.K.; O'Connell, M. E.; Prestegaard, K.L.

2007-01-01

Ground water processes affecting seasonal variations of surface water nitrate concentrations were investigated in an incised first-order stream in an agricultural watershed with a riparian forest in the coastal plain of Maryland. Aquifer characteristics including sediment stratigraphy, geochemistry, and hydraulic properties were examined in combination with chemical and isotopic analyses of ground water, macropore discharge, and stream water. The ground water flow system exhibits vertical stratification of hydraulic properties and redox conditions, with sub-horizontal boundaries that extend beneath the field and adjacent riparian forest. Below the minimum water table position, ground water age gradients indicate low recharge rates (2-5 cm yr-1) and long residence times (years to decades), whereas the transient ground water wedge between the maximum and minimum water table positions has a relatively short residence time (months to years), partly because of an upward increase in hydraulic conductivity. Oxygen reduction and denitrification in recharging ground waters are coupled with pyrite oxidation near the minimum water table elevation in a mottled weathering zone in Tertiary marine glauconitic sediments. The incised stream had high nitrate concentrations during high flow conditions when much of the ground water was transmitted rapidly across the riparian zone in a shallow oxic aquifer wedge with abundant outflow macropores, and low nitrate concentrations during low flow conditions when the oxic wedge was smaller and stream discharge was dominated by upwelling from the deeper denitrified parts of the aquifer. Results from this and similar studies illustrate the importance of near-stream geomorphology and subsurface geology as controls of riparian zone function and delivery of nitrate to streams in agricultural watersheds. ?? ASA, CSSA, SSSA.

Deoxygenation of the Baltic Sea during the last century

PubMed Central

Carstensen, Jacob; Andersen, Jesper H.; Gustafsson, Bo G.; Conley, Daniel J.

2014-01-01

Deoxygenation is a global problem in coastal and open regions of the ocean, and has led to expanding areas of oxygen minimum zones and coastal hypoxia. The recent expansion of hypoxia in coastal ecosystems has been primarily attributed to global warming and enhanced nutrient input from land and atmosphere. The largest anthropogenically induced hypoxic area in the world is the Baltic Sea, where the relative importance of physical forcing versus eutrophication is still debated. We have analyzed water column oxygen and salinity profiles to reconstruct oxygen and stratification conditions over the last 115 y and compare the influence of both climate and anthropogenic forcing on hypoxia. We report a 10-fold increase of hypoxia in the Baltic Sea and show that this is primarily linked to increased inputs of nutrients from land, although increased respiration from higher temperatures during the last two decades has contributed to worsening oxygen conditions. Although shifts in climate and physical circulation are important factors modulating the extent of hypoxia, further nutrient reductions in the Baltic Sea will be necessary to reduce the ecosystems impacts of deoxygenation. PMID:24706804

Size really does matter: effects of filter fractionation on microbial community structure in a model oxygen minimum zone.

NASA Astrophysics Data System (ADS)

Torres Beltran, M.

2016-02-01

The Scientific Committee on Oceanographic Research (SCOR) Working Group 144 "Microbial Community Responses to Ocean Deoxygenation" workshop held in Vancouver, British Columbia in July 2014 had the primary objective of kick-starting the establishment of a minimal core of technologies, techniques and standard operating procedures (SOPs) to enable compatible process rate and multi-molecular data (DNA, RNA and protein) collection in marine oxygen minimum zones (OMZs) and other oxygen starved waters. Experimental activities conducted in Saanich Inlet, a seasonally anoxic fjord on Vancouver Island British Columbia, were designed to compare and cross-calibrate in situ sampling devices (McLane PPS system) with conventional bottle sampling and incubation methods. Bottle effects on microbial community composition, and activity were tested using different filter combinations and sample volumes to compare PPS/IPS (0.4 µm) versus Sterivex (0.22 µm) filtration methods with and without prefilters (2.7 µm). Resulting biomass was processed for small subunit ribosomal RNA gene sequencing across all three domains of life on the 454 platform followed by downstream community structure analyses. Significant community shifts occurred within and between filter fractions for in situ versus on-ship processed samples. For instance, the relative abundance of several bacterial phyla including Bacteroidetes, Delta and Gammaproteobacteria decreased five-fold on-ship when compared to in situ filtration. Similarly, experimental mesocosms showed similar community structure and activity to in situ filtered samples indicating the need to cross-calibrate incubations to constrain bottle effects. In addition, alpha and beta diversity significantly changed as function of filter size and volume, as well as the operational taxonomic units identified using indicator species analysis for each filter size. Our results provide statistical support that microbial community structure is systematically biased by filter fraction methods and highlight the need for establishing compatible techniques among researchers that facilitate comparative and reproducible science for the whole community.

Sedimentology and chronology of the advance and retreat of the last British-Irish Ice Sheet on the continental shelf west of Ireland

NASA Astrophysics Data System (ADS)

Peters, Jared L.; Benetti, Sara; Dunlop, Paul; Ó Cofaigh, Colm; Moreton, Steven G.; Wheeler, Andrew J.; Clark, Christopher D.

2016-05-01

The last British-Irish Ice Sheet (BIIS) had extensive marine-terminating margins and was drained by multiple large ice streams and is thus a useful analogue for marine-based areas of modern ice sheets. However, despite recent advances from investigating the offshore record of the BIIS, the dynamic history of its marine margins, which would have been sensitive to external forcing(s), remain inadequately understood. This study is the first reconstruction of the retreat dynamics and chronology of the western, marine-terminating, margin of the last (Late Midlandian) BIIS. Analyses of shelf geomorphology and core sedimentology and chronology enable a reconstruction of the Late Midlandian history of the BIIS west of Ireland, from initial advance to final retreat onshore. Five AMS radiocarbon dates from marine cores constrain the timing of retreat and associated readvances during deglaciation. The BIIS advanced without streaming or surging, depositing a bed of highly consolidated subglacial traction till, and reached to within ∼20 km of the shelf break by ∼24,000 Cal BP. Ice margin retreat was likely preceded by thinning, grounding zone retreat and ice shelf formation on the outer shelf by ∼22,000 Cal BP. This ice shelf persisted for ≤2500 years, while retreating at a minimum rate of ∼24 m/yr and buttressing a >150-km long, 20-km wide, bathymetrically-controlled grounding zone. A large (∼150 km long), arcuate, flat-topped grounding-zone wedge, termed here the Galway Lobe Grounding-Zone Wedge (GLGZW), was deposited below this ice shelf and records a significant stillstand in BIIS retreat. Geomorphic relationships indicate that the BIIS experienced continued thinning during its retreat across the shelf, which led to increased topographic influence on its flow dynamics following ice shelf break up and grounding zone retreat past the GLGZW. At this stage of retreat the western BIIS was comprised of several discrete, asynchronous lobes that underwent several readvances. Sedimentary evidence of dilatant till deposition suggests that the readvances may have been rapid and possibly associated with ice streaming or surging. The largest lobe extended offshore from Galway Bay and deposited the Galway Lobe Readvance Moraine by <18,500 Cal BP. Further to the north, an ice lobe readvanced at least 50 km offshore from Killary Harbour, possibly by ≤15,100 Cal BP. The existing chronology currently does not allow us to determine conclusively whether these readvances were a glaciodynamic (internally-driven) response of the ice sheet during deglaciation or were climatically-driven. Following the <18,500 Cal BP readvance, the Galway Lobe experienced accelerated eastward retreat at an estimated rate of ∼113 m/yr.

Oxygen isotopic variations in the outer margins and Wark–Lovering rims of refractory inclusions

DOE PAGES

Simon, Justin I.; Matzel, Jennifer E. P.; Simon, Steven B.; ...

2016-05-02

Oxygen isotopic variations across the outer margins and Wark–Lovering (WL) rims of a diverse suite of six coarse-grained Types A and B refractory inclusions from both oxidized and reduced CV3 chondrites suggest that CAIs originated from a 16O-rich protosolar gas reservoir and were later exposed to both relatively 17,18O-rich and 16O-rich reservoirs. The O-isotope profiles of CAIs can be explained by changes in the composition of gas near the protoSun or the migration of CAIs through a heterogeneous nebula. Variability within the inclusion interiors appears to have been set prior to WL rim growth. Modeling the isotopic zoning profiles asmore » diffusion gradients between inclusion interiors and edges establishes a range of permissible time–temperature combinations for their exposure in the nebula. At mean temperatures of 1400 K, models that match the isotope gradients in the inclusions yield timescales ranging from 5 × 10 3 to 3 × 10 5 years. Assuming CAIs originated with a relatively 16O-rich (protosolar) isotopic composition, differences among the melilite interiors and the isotopic gradients in their margins imply the existence of a number of isotopically distinct reservoirs. In addition, evidence at the edges of some CAIs for subsequent isotopic exchange may relate to the beginning of rim formation. In the WL rim layers surrounding the interiors, spinel is relatively 16O-rich but subtly distinct among different CAIs. Melilite is often relatively 16O-poor, but rare relatively 16O-rich grains also exist. Pyroxene generally exhibits intermediate O-isotope compositions and isotopic zoning. Olivine in both WL and accretionary rims, when present, is isotopically heterogeneous. The extreme isotopic heterogeneity among and within individual WL rim layers and in particular, the observed trends of outward 16O-enrichments, suggest that rims surrounding CAIs contained in CV3 chondrites, like the inclusions themselves, formed from a number of isotopically distinct gas reservoirs. Collectively, these results support numerical protoplanetary disk models in which CAIs were transported between several distinct nebular reservoirs multiple times prior to accretion onto a parent body.« less

Oxygen isotopic variations in the outer margins and Wark-Lovering rims of refractory inclusions

NASA Astrophysics Data System (ADS)

Simon, Justin I.; Matzel, Jennifer E. P.; Simon, Steven B.; Hutcheon, Ian D.; Ross, D. Kent; Weber, Peter K.; Grossman, Lawrence

2016-08-01

Oxygen isotopic variations across the outer margins and Wark-Lovering (WL) rims of a diverse suite of six coarse-grained Types A and B refractory inclusions from both oxidized and reduced CV3 chondrites suggest that CAIs originated from a 16O-rich protosolar gas reservoir and were later exposed to both relatively 17,18O-rich and 16O-rich reservoirs. The O-isotope profiles of CAIs can be explained by changes in the composition of gas near the protoSun or the migration of CAIs through a heterogeneous nebula. Variability within the inclusion interiors appears to have been set prior to WL rim growth. Modeling the isotopic zoning profiles as diffusion gradients between inclusion interiors and edges establishes a range of permissible time-temperature combinations for their exposure in the nebula. At mean temperatures of 1400 K, models that match the isotope gradients in the inclusions yield timescales ranging from 5 × 103 to 3 × 105 years. Assuming CAIs originated with a relatively 16O-rich (protosolar) isotopic composition, differences among the melilite interiors and the isotopic gradients in their margins imply the existence of a number of isotopically distinct reservoirs. Evidence at the edges of some CAIs for subsequent isotopic exchange may relate to the beginning of rim formation. In the WL rim layers surrounding the interiors, spinel is relatively 16O-rich but subtly distinct among different CAIs. Melilite is often relatively 16O-poor, but rare relatively 16O-rich grains also exist. Pyroxene generally exhibits intermediate O-isotope compositions and isotopic zoning. Olivine in both WL and accretionary rims, when present, is isotopically heterogeneous. The extreme isotopic heterogeneity among and within individual WL rim layers and in particular, the observed trends of outward 16O-enrichments, suggest that rims surrounding CAIs contained in CV3 chondrites, like the inclusions themselves, formed from a number of isotopically distinct gas reservoirs. Collectively, these results support numerical protoplanetary disk models in which CAIs were transported between several distinct nebular reservoirs multiple times prior to accretion onto a parent body.

Intensification and deepening of the Arabian Sea oxygen minimum zone in response to increase in Indian monsoon wind intensity

NASA Astrophysics Data System (ADS)

Lachkar, Zouhair; Lévy, Marina; Smith, Shafer

2018-01-01

The decline in oxygen supply to the ocean associated with global warming is expected to expand oxygen minimum zones (OMZs). This global trend can be attenuated or amplified by regional processes. In the Arabian Sea, the world's thickest OMZ is highly vulnerable to changes in the Indian monsoon wind. Evidence from paleo-records and future climate projections indicates strong variations of the Indian monsoon wind intensity over climatic timescales. Yet, the response of the OMZ to these wind changes remains poorly understood and its amplitude and timescale unexplored. Here, we investigate the impacts of perturbations in Indian monsoon wind intensity (from -50 to +50 %) on the size and intensity of the Arabian Sea OMZ, and examine the biogeochemical and ecological implications of these changes. To this end, we conducted a series of eddy-resolving simulations of the Arabian Sea using the Regional Ocean Modeling System (ROMS) coupled to a nitrogen-based nutrient-phytoplankton-zooplankton-detritus (NPZD) ecosystem model that includes a representation of the O2 cycle. We show that the Arabian Sea productivity increases and its OMZ expands and deepens in response to monsoon wind intensification. These responses are dominated by the perturbation of the summer monsoon wind, whereas the changes in the winter monsoon wind play a secondary role. While the productivity responds quickly and nearly linearly to wind increase (i.e., on a timescale of years), the OMZ response is much slower (i.e., a timescale of decades). Our analysis reveals that the OMZ expansion at depth is driven by increased oxygen biological consumption, whereas its surface weakening is induced by increased ventilation. The enhanced ventilation favors episodic intrusions of oxic waters in the lower epipelagic zone (100-200 m) of the western and central Arabian Sea, leading to intermittent expansions of marine habitats and a more frequent alternation of hypoxic and oxic conditions there. The increased productivity and deepening of the OMZ also lead to a strong intensification of denitrification at depth, resulting in a substantial amplification of fixed nitrogen depletion in the Arabian Sea. We conclude that changes in the Indian monsoon can affect, on longer timescales, the large-scale biogeochemical cycles of nitrogen and carbon, with a positive feedback on climate change in the case of stronger winds. Additional potential changes in large-scale ocean ventilation and stratification may affect the sensitivity of the Arabian Sea OMZ to monsoon intensification.

Ocean N2O Emissions : Recent Global Estimates and Anthropogenically Influenced Changes

NASA Astrophysics Data System (ADS)

Suntharalingam, P.; Buithenuis, E.; Andrews, O.; Le Quere, C.

2016-12-01

Oceanic N2O is produced by microbial activity during organic matter cycling in the subsurface ocean; its production mechanisms display sensitivity to ambient oxygen level. In the oxic ocean, N2O is produced as a byproduct during the oxidation of ammonia to nitrate, mediated by ammonia oxidizing bacteria and archea. N2O is also produced and consumed in sub-oxic and anoxic waters through the action of marine denitrifiers during the multi-step reduction of nitrate to gaseous nitrogen. The oceanic N2O distribution therefore displays significant heterogeneity with background levels of 10-20 nmol/l in the well-oxygenated ocean basins, high concentrations (> 40 nmol/l) in hypoxic waters, and N2O depletion in the core of ocean oxygen minimum zones (OMZs). Oceanic N2O emissions are estimated to account for up to a third of the pre-industrial N2O fluxes to the atmosphere, however the natural cycle of ocean N2O has been perturbed in recent decades by inputs of anthropogenically derived nutrient, and by the impacts of climate change. Anthropogenic nitrogen inputs (e.g., NOx and NHy from fossil fuel combustion and agricultural fertilizer) enter the ocean via atmospheric deposition and riverine fluxes, influencing oceanic N2O production via their impact on the marine organic matter cycle. In addition, climate variations associated with surface ocean warming affect oceanic circulation and nutrient transport pathways, influencing marine productivity and the ventilation of oxygen minimum zones. Recent studies have suggested that possible expansion of oceanic OMZs in a warming climate could lead to significant changes in N2O production and fluxes from these regions. We will summarise the current state of knowledge on the ocean N2O budget and net flux to the atmosphere. Recently reported estimates have been based on (i) empirical relationships derived from ocean tracer data (e.g., involving excess N2O and Apparent Oxygen Utilization (AOU) correlations), (ii) ocean biogeochemical models, and (iii) air-sea flux calculations which combine surface ocean N2O measurements with gas-exchange relationships. We will also present results from ongoing ocean biogeochemistry model analyses evaluating the separate influences of climate variation and anthropogenic nutrient inputs on ocean N2O emissions for recent decades.

Monoclonal Antibody Therapy and Peripheral Stem Cell Transplant in Treating Patients With Non-Hodgkin's Lymphoma

ClinicalTrials.gov

2013-01-08

Contiguous Stage II Adult Diffuse Large Cell Lymphoma; Contiguous Stage II Adult Diffuse Small Cleaved Cell Lymphoma; Contiguous Stage II Grade 1 Follicular Lymphoma; Contiguous Stage II Grade 2 Follicular Lymphoma; Contiguous Stage II Grade 3 Follicular Lymphoma; Contiguous Stage II Mantle Cell Lymphoma; Contiguous Stage II Marginal Zone Lymphoma; Contiguous Stage II Small Lymphocytic Lymphoma; Extranodal Marginal Zone B-cell Lymphoma of Mucosa-associated Lymphoid Tissue; Noncontiguous Stage II Adult Diffuse Large Cell Lymphoma; Noncontiguous Stage II Adult Diffuse Small Cleaved Cell Lymphoma; Noncontiguous Stage II Grade 1 Follicular Lymphoma; Noncontiguous Stage II Grade 2 Follicular Lymphoma; Noncontiguous Stage II Grade 3 Follicular Lymphoma; Noncontiguous Stage II Mantle Cell Lymphoma; Noncontiguous Stage II Marginal Zone Lymphoma; Noncontiguous Stage II Small Lymphocytic Lymphoma; Recurrent Adult Diffuse Large Cell Lymphoma; Recurrent Adult Diffuse Small Cleaved Cell Lymphoma; Recurrent Grade 1 Follicular Lymphoma; Recurrent Grade 2 Follicular Lymphoma; Recurrent Grade 3 Follicular Lymphoma; Recurrent Mantle Cell Lymphoma; Recurrent Marginal Zone Lymphoma; Recurrent Small Lymphocytic Lymphoma; Stage I Adult Diffuse Large Cell Lymphoma; Stage I Adult Diffuse Small Cleaved Cell Lymphoma; Stage I Grade 1 Follicular Lymphoma; Stage I Grade 2 Follicular Lymphoma; Stage I Grade 3 Follicular Lymphoma; Stage I Mantle Cell Lymphoma; Stage I Marginal Zone Lymphoma; Stage I Small Lymphocytic Lymphoma; Stage III Adult Diffuse Large Cell Lymphoma; Stage III Adult Diffuse Small Cleaved Cell Lymphoma; Stage III Grade 1 Follicular Lymphoma; Stage III Grade 2 Follicular Lymphoma; Stage III Grade 3 Follicular Lymphoma; Stage III Mantle Cell Lymphoma; Stage III Marginal Zone Lymphoma; Stage III Small Lymphocytic Lymphoma; Stage IV Adult Diffuse Large Cell Lymphoma; Stage IV Adult Diffuse Small Cleaved Cell Lymphoma; Stage IV Grade 1 Follicular Lymphoma; Stage IV Grade 2 Follicular Lymphoma; Stage IV Grade 3 Follicular Lymphoma; Stage IV Mantle Cell Lymphoma; Stage IV Marginal Zone Lymphoma; Stage IV Small Lymphocytic Lymphoma; Waldenström Macroglobulinemia

Flavopiridol in Treating Patients With Relapsed or Refractory Lymphoma or Multiple Myeloma

ClinicalTrials.gov

2016-06-27

Adult Lymphocyte Depletion Hodgkin Lymphoma; Adult Lymphocyte Predominant Hodgkin Lymphoma; Adult Mixed Cellularity Hodgkin Lymphoma; Adult Nodular Sclerosis Hodgkin Lymphoma; Anaplastic Large Cell Lymphoma; Angioimmunoblastic T-cell Lymphoma; Extranodal Marginal Zone B-cell Lymphoma of Mucosa-associated Lymphoid Tissue; Nodal Marginal Zone B-cell Lymphoma; Recurrent Adult Diffuse Large Cell Lymphoma; Recurrent Adult Diffuse Mixed Cell Lymphoma; Recurrent Adult Diffuse Small Cleaved Cell Lymphoma; Recurrent Adult Grade III Lymphomatoid Granulomatosis; Recurrent Adult Hodgkin Lymphoma; Recurrent Adult T-cell Leukemia/Lymphoma; Recurrent Cutaneous T-cell Non-Hodgkin Lymphoma; Recurrent Grade 1 Follicular Lymphoma; Recurrent Grade 2 Follicular Lymphoma; Recurrent Grade 3 Follicular Lymphoma; Recurrent Mantle Cell Lymphoma; Recurrent Marginal Zone Lymphoma; Recurrent Mycosis Fungoides/Sezary Syndrome; Recurrent Small Lymphocytic Lymphoma; Refractory Multiple Myeloma; Splenic Marginal Zone Lymphoma; Stage I Multiple Myeloma; Stage II Multiple Myeloma; Stage III Multiple Myeloma; Waldenström Macroglobulinemia

Gemcitabine Hydrochloride, Carboplatin, Dexamethasone, and Rituximab in Treating Patients With Previously Treated Lymphoid Malignancies

ClinicalTrials.gov

2017-05-28

Adult Nasal Type Extranodal NK/T-cell Lymphoma; Anaplastic Large Cell Lymphoma; Angioimmunoblastic T-cell Lymphoma; Cutaneous B-cell Non-Hodgkin Lymphoma; Extranodal Marginal Zone B-cell Lymphoma of Mucosa-associated Lymphoid Tissue; Hepatosplenic T-cell Lymphoma; Intraocular Lymphoma; Nodal Marginal Zone B-cell Lymphoma; Noncutaneous Extranodal Lymphoma; Peripheral T-cell Lymphoma; Recurrent Adult Burkitt Lymphoma; Recurrent Adult Diffuse Large Cell Lymphoma; Recurrent Adult Diffuse Mixed Cell Lymphoma; Recurrent Adult Diffuse Small Cleaved Cell Lymphoma; Recurrent Adult Grade III Lymphomatoid Granulomatosis; Recurrent Adult Hodgkin Lymphoma; Recurrent Adult Immunoblastic Large Cell Lymphoma; Recurrent Adult Lymphoblastic Lymphoma; Recurrent Adult T-cell Leukemia/Lymphoma; Recurrent Cutaneous T-cell Non-Hodgkin Lymphoma; Recurrent Grade 1 Follicular Lymphoma; Recurrent Grade 2 Follicular Lymphoma; Recurrent Grade 3 Follicular Lymphoma; Recurrent Mantle Cell Lymphoma; Recurrent Marginal Zone Lymphoma; Recurrent Mycosis Fungoides/Sezary Syndrome; Recurrent Small Lymphocytic Lymphoma; Small Intestine Lymphoma; Splenic Marginal Zone Lymphoma; Testicular Lymphoma; Waldenstrom Macroglobulinemia

Panobinostat and Everolimus in Treating Patients With Recurrent Multiple Myeloma, Non-Hodgkin Lymphoma, or Hodgkin Lymphoma

ClinicalTrials.gov

2018-04-19

Adult Nasal Type Extranodal NK/T-cell Lymphoma; Anaplastic Large Cell Lymphoma; Angioimmunoblastic T-cell Lymphoma; B-cell Adult Acute Lymphoblastic Leukemia; Extranodal Marginal Zone B-cell Lymphoma of Mucosa-associated Lymphoid Tissue; Hepatosplenic T-cell Lymphoma; Nodal Marginal Zone B-cell Lymphoma; Post-transplant Lymphoproliferative Disorder; Primary Central Nervous System Non-Hodgkin Lymphoma; Recurrent Adult Acute Lymphoblastic Leukemia; Recurrent Adult Burkitt Lymphoma; Recurrent Adult Diffuse Large Cell Lymphoma; Recurrent Adult Hodgkin Lymphoma; Recurrent Adult Lymphoblastic Lymphoma; Recurrent Adult T-cell Leukemia/Lymphoma; Recurrent Cutaneous T-cell Non-Hodgkin Lymphoma; Recurrent Grade 1 Follicular Lymphoma; Recurrent Grade 2 Follicular Lymphoma; Recurrent Grade 3 Follicular Lymphoma; Recurrent Mantle Cell Lymphoma; Recurrent Marginal Zone Lymphoma; Recurrent Mycosis Fungoides/Sezary Syndrome; Recurrent Small Lymphocytic Lymphoma; Refractory Chronic Lymphocytic Leukemia; Refractory Multiple Myeloma; Splenic Marginal Zone Lymphoma; T-cell Adult Acute Lymphoblastic Leukemia; Waldenström Macroglobulinemia

Molecular pathogenesis of splenic and nodal marginal zone lymphoma.

PubMed

Spina, Valeria; Rossi, Davide

Genomic studies have improved our understanding of the biological basis of splenic (SMZL) and nodal (NMZL) marginal zone lymphoma by providing a comprehensive and unbiased view of the genes/pathways that are deregulated in these diseases. Consistent with the physiological involvement of NOTCH, NF-κB, B-cell receptor and toll-like receptor signaling in mature B-cells differentiation into the marginal zone B-cells, many oncogenic mutations of genes involved in these pathways have been identified in SMZL and NMZL. Beside genetic lesions, also epigenetic and post-transcriptional modifications contribute to the deregulation of marginal zone B-cell differentiation pathways in SMZL and NMZL. This review describes the progress in understanding the molecular mechanism underlying SMZL and NMZL, including molecular and post-transcriptional modifications, and discusses how information gained from these efforts has provided new insights on potential targets of diagnostic, prognostic and therapeutic relevance in SMZL and NMZL. Copyright © 2016 Elsevier Ltd. All rights reserved.

Prolonged or Standard Infusion of Cefepime Hydrochloride in Treating Patients With Febrile Neutropenia

ClinicalTrials.gov

2017-05-25

Adult Acute Lymphoblastic Leukemia; Adult Acute Myeloid Leukemia; Adult Burkitt Lymphoma; Adult Diffuse Large Cell Lymphoma; Adult Diffuse Mixed Cell Lymphoma; Adult Diffuse Small Cleaved Cell Lymphoma; Adult Hodgkin Lymphoma; Adult Immunoblastic Large Cell Lymphoma; Adult Lymphoblastic Lymphoma; Atypical Chronic Myeloid Leukemia, BCR-ABL1 Negative; Breast Cancer; Chronic Eosinophilic Leukemia; Chronic Lymphocytic Leukemia; Chronic Myelogenous Leukemia; Chronic Myelomonocytic Leukemia; Chronic Neutrophilic Leukemia; Cutaneous T-cell Non-Hodgkin Lymphoma; Disseminated Neuroblastoma; Extranodal Marginal Zone B-cell Lymphoma of Mucosa-associated Lymphoid Tissue; Grade 1 Follicular Lymphoma; Grade 2 Follicular Lymphoma; Grade 3 Follicular Lymphoma; Malignant Testicular Germ Cell Tumor; Mantle Cell Lymphoma; Marginal Zone Lymphoma; Multiple Myeloma; Mycosis Fungoides/Sezary Syndrome; Myelodysplastic Syndromes; Myelodysplastic/Myeloproliferative Neoplasms; Neutropenia; Nodal Marginal Zone B-cell Lymphoma; Ovarian Epithelial Cancer; Ovarian Germ Cell Tumor; Plasma Cell Neoplasm; Poor Prognosis Metastatic Gestational Trophoblastic Tumor; Primary Myelofibrosis; Prolymphocytic Leukemia; Small Lymphocytic Lymphoma; Splenic Marginal Zone Lymphoma

40 CFR 63.1365 - Test methods and initial compliance procedures.

Code of Federal Regulations, 2013 CFR

2013-07-01

... design minimum and average temperature in the combustion zone and the combustion zone residence time. (B... establish the design minimum and average flame zone temperatures and combustion zone residence time, and... carbon bed temperature after regeneration, design carbon bed regeneration time, and design service life...

Simulation of hydrodynamics, temperature, and dissolved oxygen in Table Rock Lake, Missouri, 1996-1997

USGS Publications Warehouse

Green, W. Reed; Galloway, Joel M.; Richards, Joseph M.; Wesolowski, Edwin A.

2003-01-01

Outflow from Table Rock Lake and other White River reservoirs support a cold-water trout fishery of substantial economic yield in south-central Missouri and north-central Arkansas. The Missouri Department of Conservation has requested an increase in existing minimum flows through the Table Rock Lake Dam from the U.S. Army Corps of Engineers to increase the quality of fishable waters downstream in Lake Taneycomo. Information is needed to assess the effect of increased minimum flows on temperature and dissolved- oxygen concentrations of reservoir water and the outflow. A two-dimensional, laterally averaged, hydrodynamic, temperature, and dissolved-oxygen model, CE-QUAL-W2, was developed and calibrated for Table Rock Lake, located in Missouri, north of the Arkansas-Missouri State line. The model simulates water-surface elevation, heat transport, and dissolved-oxygen dynamics. The model was developed to assess the effects of proposed increases in minimum flow from about 4.4 cubic meters per second (the existing minimum flow) to 11.3 cubic meters per second (the increased minimum flow). Simulations included assessing the effect of (1) increased minimum flows and (2) increased minimum flows with increased water-surface elevations in Table Rock Lake, on outflow temperatures and dissolved-oxygen concentrations. In both minimum flow scenarios, water temperature appeared to stay the same or increase slightly (less than 0.37 ?C) and dissolved oxygen appeared to decrease slightly (less than 0.78 mg/L) in the outflow during the thermal stratification season. However, differences between the minimum flow scenarios for water temperature and dissolved- oxygen concentration and the calibrated model were similar to the differences between measured and simulated water-column profile values.

Sorafenib in Treating Patients With Metastatic or Unresectable Solid Tumors, Multiple Myeloma, or Non-Hodgkin's Lymphoma With or Without Impaired Liver or Kidney Function

ClinicalTrials.gov

2013-01-04

Extranodal Marginal Zone B-cell Lymphoma of Mucosa-associated Lymphoid Tissue; Nodal Marginal Zone B-cell Lymphoma; Recurrent Adult Burkitt Lymphoma; Recurrent Adult Diffuse Large Cell Lymphoma; Recurrent Adult Diffuse Mixed Cell Lymphoma; Recurrent Adult Diffuse Small Cleaved Cell Lymphoma; Recurrent Adult Grade III Lymphomatoid Granulomatosis; Recurrent Adult Immunoblastic Large Cell Lymphoma; Recurrent Adult Lymphoblastic Lymphoma; Recurrent Grade 1 Follicular Lymphoma; Recurrent Grade 2 Follicular Lymphoma; Recurrent Grade 3 Follicular Lymphoma; Recurrent Mantle Cell Lymphoma; Recurrent Marginal Zone Lymphoma; Recurrent Small Lymphocytic Lymphoma; Refractory Multiple Myeloma; Splenic Marginal Zone Lymphoma; Stage II Multiple Myeloma; Stage III Adult Burkitt Lymphoma; Stage III Adult Diffuse Large Cell Lymphoma; Stage III Adult Diffuse Mixed Cell Lymphoma; Stage III Adult Diffuse Small Cleaved Cell Lymphoma; Stage III Adult Immunoblastic Large Cell Lymphoma; Stage III Adult Lymphoblastic Lymphoma; Stage III Grade 1 Follicular Lymphoma; Stage III Grade 2 Follicular Lymphoma; Stage III Grade 3 Follicular Lymphoma; Stage III Mantle Cell Lymphoma; Stage III Marginal Zone Lymphoma; Stage III Multiple Myeloma; Stage III Small Lymphocytic Lymphoma; Stage IV Adult Burkitt Lymphoma; Stage IV Adult Diffuse Large Cell Lymphoma; Stage IV Adult Diffuse Mixed Cell Lymphoma; Stage IV Adult Diffuse Small Cleaved Cell Lymphoma; Stage IV Adult Immunoblastic Large Cell Lymphoma; Stage IV Adult Lymphoblastic Lymphoma; Stage IV Grade 1 Follicular Lymphoma; Stage IV Grade 2 Follicular Lymphoma; Stage IV Grade 3 Follicular Lymphoma; Stage IV Mantle Cell Lymphoma; Stage IV Marginal Zone Lymphoma; Stage IV Small Lymphocytic Lymphoma; Unspecified Adult Solid Tumor, Protocol Specific; Waldenström Macroglobulinemia

The export and fate of organic matter in the ocean: New constraints from combining satellite and oceanographic tracer observations

NASA Astrophysics Data System (ADS)

DeVries, Tim; Weber, Thomas

2017-03-01

The ocean's biological pump transfers carbon from the surface euphotic zone into the deep ocean, reducing the atmospheric CO2 concentration. Despite its climatic importance, there are large uncertainties in basic metrics of the biological pump. Previous estimates of the strength of the biological pump, as measured by the amount of organic carbon exported from the euphotic zone, range from about 4 to 12 Pg C yr-1. The fate of exported carbon, in terms of how efficiently it is transferred into the deep ocean, is even more uncertain. Here we present a new model of the biological pump that assimilates satellite and oceanographic tracer observations to constrain rates and patterns of organic matter production, export, and remineralization in the ocean. The data-assimilated model predicts a global particulate organic carbon (POC) flux out of the euphotic zone of ˜9 Pg C yr-1. The particle export ratio (the ratio of POC export to net primary production) is highest at high latitudes and lowest at low latitudes, but low-latitude export is greater than predicted by previous models, in better agreement with observed patterns of long-term carbon export. Particle transfer efficiency (Teff) through the mesopelagic zone is controlled by temperature and oxygen, with highest Teff for high-latitude regions and oxygen minimum zones. In contrast, Teff in the deep ocean (below 1000 m) is controlled by particle sinking speed, with highest deep ocean Teff below the subtropical gyres. These results emphasize the utility of both remote sensing and oceanographic tracer observations for constraining the operation of the biological pump.

Pb-Sr-Nd-O isotopic characterization of Mesozoic rocks throughout the northern end of the Peninsular Ranges batholith: Isotopic evidence for the magmatic evolution of oceanic arc–continental margin accretion during the Late Cretaceous of southern California

USGS Publications Warehouse

Kistler, Ronald W.; Wooden, Joseph L.; Premo, Wayne R.; Morton, Douglas M.

2014-01-01

Within the duration of the U.S. Geological Survey (USGS)–based Southern California Areal Mapping Project (SCAMP), many samples from the northern Peninsular Ranges batholith were studied for their whole-rock radioisotopic systematics (rubidium-strontium [Rb-Sr], uranium-thorium-lead [U-Th-Pb], and samarium-neodymium [Sm-Nd]), as well as oxygen (O), a stable isotope. The results of three main studies are presented separately, but here we combine them (>400 analyses) to produce a very complete Pb-Sr-Nd-O isotopic profile of an arc-continent collisional zone—perhaps the most complete in the world. In addition, because many of these samples have U-Pb zircon as well as argon mineral age determinations, we have good control of the timing for Pb-Sr-Nd-O isotopic variations.The ages and isotopic variations help to delineate at least four zones across the batholith from west to east—an older western zone (126–108 Ma), a transitional zone (111–93 Ma), an eastern zone (94–91 Ma), and a much younger allochthonous thrust sheet (ca. 84 Ma), which is the upper plate of the Eastern Peninsular Ranges mylonite zone. Average initial 87Sr/86 Sr (Sri), initial 206Pb/204Pb (206 Pbi), initial 208Pb/204Pb (average 208Pbi), initial epsilon Nd (average εNdi), and δ18O signatures range from 0.704, 18.787, 38.445, +3.1, and 4.0‰–9.0‰, respectively, in the westernmost zone, to 0.7071, 19.199, 38.777, −5, and 9‰–12‰, respectively, in the easternmost zone. The older western zone is therefore the more chemically and isotopically juvenile, characterized mostly by values that are slightly displaced from a mantle array at ca. 115 Ma, and similar to some modern island-arc signatures. In contrast, the isotopic signatures in the eastern zones indicate significant amounts of crustal involvement in the magmatic plumbing of those plutons. These isotopic signatures confirm previously published results that interpreted the Peninsular Ranges batholith as a progressively contaminated magmatic arc. The Peninsular Ranges batholith magmatic arc was initially an oceanic arc built on Panthalassan lithosphere that eventually evolved into a continental margin magmatic arc collision zone, eventually overriding North American cratonic lithosphere. Our Pb-Sr-Nd data further suggest that the western arc rocks represent a nearshore or inboard oceanic arc, as they exhibit isotopic signatures that are more enriched than typical mid-ocean-ridge basalt (MORB). Isotopic signatures from the central zone are transitional and indicate that enriched crustal magma sources were becoming involved in the northern Peninsular Ranges batholith magmatic plumbing. As the oceanic arc–continental margin collision progressed, a mixture of oceanic mantle and continental magmatic sources transpired. Magmatic production in the northern Peninsular Ranges batholith moved eastward and continued to tap enriched crustal magmatic sources. Similar modeling has been previously proposed for two other western margin magmatic arcs, the Sierra Nevada batholith of central California and the Idaho batholith.Calculated initial Nd signatures at ca. 100 Ma for Permian–Jurassic and Proterozoic basement rocks from the nearby San Gabriel Mountains and possible source areas along the southwestern Laurentian margin of southern California, southwestern Arizona, and northern Sonora strongly suggest their involvement with deep crustal magma mixing beneath the eastern zones of the Peninsular Ranges batholith, as well as farther east in continental lithospheric zones.Last, several samples from the allochthonous, easternmost upper-plate zone, which are considerably younger (ca. 84 Ma) than any of the rocks from the northern Peninsular Ranges batholith proper, have even more enriched average Sri, 206Pbi, 208Pbi, and εNdisignatures of 0.7079, 19.344, 38.881, and −6.6, respectively, indicative of the most-evolved magma sources in the northern Peninsular Ranges batholith and similar to radioisotopic values for rocks from the nearby Transverse Ranges, suggesting a genetic connection between the two.

Monitoring microbial responses to ocean deoxygenation in a model oxygen minimum zone.

PubMed

Hallam, Steven J; Torres-Beltrán, Mónica; Hawley, Alyse K

2017-10-31

Today in Scientific Data, two compendia of geochemical and multi-omic sequence information (DNA, RNA, protein) generated over almost a decade of time series monitoring in a seasonally anoxic coastal marine setting are presented to the scientific community. These data descriptors introduce a model ecosystem for the study of microbial responses to ocean deoxygenation, a phenotype that is currently expanding due to climate change. Public access to this time series information is intended to promote scientific collaborations and the generation of new hypotheses relevant to microbial ecology, biogeochemistry and global change issues.

Revisiting nitrification in the Eastern Tropical South Pacific: A focus on controls

NASA Astrophysics Data System (ADS)

Peng, Xuefeng; Fuchsman, Clara A.; Jayakumar, Amal; Warner, Mark J.; Devol, Allan H.; Ward, Bess B.

2016-03-01

Nitrification, the oxidation of ammonium (NH4+) to nitrite (NO2-) and to nitrate (NO3-), is a component of the nitrogen (N) cycle internal to the fixed N pool. In oxygen minimum zones (OMZs), which are hotspots for oceanic fixed N loss, nitrification plays a key role because it directly supplies substrates for denitrification and anaerobic ammonia oxidation (anammox), and may compete for substrates with these same processes. However, the control of oxygen and substrate concentrations on nitrification are not well understood. We performed onboard incubations with 15N-labeled substrates to measure rates of NH4+ and NO2- oxidation in the eastern tropical South Pacific (ETSP). The spatial and depth distributions of NH4+ and NO2- oxidation rates were primarily controlled by NH4+ and NO2- availability, oxygen concentration, and light. In the euphotic zone, nitrification was partially photoinhibited. In the anoxic layer, NH4+ oxidation was negligible or below detection, but high rates of NO2- oxidation were observed. NH4+ oxidation displayed extremely high affinity for both NH4+ and oxygen. The positive linear correlations between NH4+ oxidation rates and in situ NH4+ concentrations and ammonia monooxygenase subunit A (amoA) gene abundances in the upper oxycline indicate that the natural assemblage of ammonia oxidizers responds to in situNH4+ concentrations or supply by adjusting their population size, which determines the NH4+ oxidation potential. The depth distribution of archaeal and bacterial amoA gene abundances and N2O concentration, along with independently reported simultaneous direct N2O production rate measurements, suggests that AOA were predominantly responsible for NH4+ oxidation, which was a major source of N2O production at oxygen concentrations > 5 µM.

Optimum aerobic volume control based on continuous in-line oxygen uptake monitoring.

PubMed

Svardal, K; Lindtner, S; Winkler, S

2003-01-01

Dynamic adaptation of the aerated volume to changing load conditions is essential to maximise the nitrogen removal performance and to minimise energy consumption. A control strategy is presented which provides optimum aerobic volume control (OAV-control concept) based on continuous in-line oxygen uptake monitoring. For ammonium concentrations below 1 mg/l the oxygen uptake rate shows a strong and almost linear dependency on the ammonium concentration. Therefore, the oxygen uptake rate is an ideal indicator for the nitrification performance in activated sludge systems. The OAV-control concept provides dynamic variation of the minimum aerobic volume required for complete nitrification and therefore maximises the denitrification performance. In-line oxygen uptake monitoring is carried out by controlling the oxygen concentration in a continuous aerated zone of the aeration tank and measuring the total air flow to the aeration tank. The total air flow to the aeration tank is directly proportional to the current oxygen uptake rate and can therefore be used as an indicator for the required aerobic volume. The instrumentation requirements for installation of the OAV-control are relatively low, oxygen sensors in the aeration tank and an on-line air flow measurement are needed. This enables individual control of aeration tanks operated in parallel at low investment costs. The OAV-control concept is installed at the WWTP Linz-Asten (1 Mio PE) and shows very good results. Full scale results are presented.

Impact of Gas Hydrate and Related Fluid Seepage on Submarine Slope Failures along the Margins of the Ulleung Basin, East Sea (Japan Sea)

NASA Astrophysics Data System (ADS)

Horozal, S.; Bahk, J. J.; Urgeles, R.; Kim, G. Y.; Cukur, D.; Lee, G. H.; Lee, S. H.; Kim, S. P.; Ryu, B. J.; Kim, J. H.

2016-12-01

The Ulleung Basin is a back-arc basin that is known to retain gas hydrate reservoirs in the East (Japan) Sea. The basin contains large volumes of mass-transport deposits (MTDs) due to submarine slope failures along its margins since the Neogene. In this study, seismic indicators of gas hydrate and associated gas and fluid flow were re-compiled on a regional multi-channel seismic reflection data. The gas hydrate occurrence zone (GHOZ) is defined by the BSR (bottom-simulating reflector) distribution. It is more pronounced along the southwestern slope with a minimum depth of 100 mbsf (meters below seafloor) at 295 mbsl (meter below sea level) on the southern, while its thickness is the greatest (250 mbsf) at the southwestern margin. Flow and seepage structures reflected on the seismic data as columnar acoustic-blanking zones varying in width and height (up to hundreds of meters) were classified into: (a) buried seismic chimneys (BSC), (b) chimneys with a mound (SCM), and (c) chimneys with a depression (SCD) on the seafloor. Pockmarks which are not associated with seismic chimneys, reflection anomalies (i.e., enhanced reflections below the BSR and hyperbolic reflections), and SCD are predominant features in the western margin, while the BSR, BSC and SCM are densely distributed in the south-southwestern margin. Present-day gas hydrate stability zone (GHSZ) is calculated using in-situ bottom-water temperature and geothermal gradient measurements (ranging between 0-17.5 oC and 25-200 oC/km, respectively) and multibeam bathymetry data. The GHSZ thickness exceeds 190 m, and the upslope limit of GHSZ ranges between about 180 and 260 mbsl. This depth range is in the proximity of the uppermost depths of landslide scars ( 190 mbsl) which are common features on the slopes along with glide planes, slides/slumps and MTDs. Overall, the base of GHSZ (BGHSZ) and the BSR depths are well-correlated in the basin. However, the BSR depths are typically greater (up to 50 m) than the BGHSZ depths on the slopes suggesting that the GHOZ is not stable. A close correlation exists between the spatial distributions of the landslides, and indicators of gas hydrate and gas/fluid flow and the GHSZ. This may imply that excess pore-pressure caused by dissociation/dissolution of gas hydrates could have played a role on slope failures.

Reversal of Increasing Tropical Ocean Hypoxia Trends With Sustained Climate Warming

NASA Astrophysics Data System (ADS)

Fu, Weiwei; Primeau, Francois; Keith Moore, J.; Lindsay, Keith; Randerson, James T.

2018-04-01

Dissolved oxygen (O2) is essential for the survival of marine animals. Climate change impacts on future oxygen distributions could modify species biogeography, trophic interactions, biodiversity, and biogeochemistry. The Coupled Model Intercomparison Project Phase 5 models predict a decreasing trend in marine O2 over the 21st century. Here we show that this increasing hypoxia trend reverses in the tropics after 2100 in the Community Earth System Model forced by atmospheric CO2 from the Representative Concentration Pathway 8.5 and Extended Concentration Pathway 8.5. In tropical intermediate waters between 200 and 1,000 m, the model predicts a steady decline of O2 and an expansion of oxygen minimum zones (OMZs) during the 21st century. By 2150, however, the trend reverses with oxygen concentration increasing and OMZ volume shrinking through 2300. A novel five-box model approach in conjunction with output from the full Earth system model is used to separate the contributions of biological and physical processes to the trends in tropical oxygen. The tropical O2 recovery is caused mainly by reductions in tropical biological export, coupled with a modest increase in ventilation after 2200. The time-evolving oxygen distribution impacts marine nitrogen cycling, with potentially important climate feedbacks.

Evidence for an evolving oxygen minimum zone in the Eastern Mediterranean during sapropel S1 controlled partly by the increased outflow from the Nile flood

NASA Astrophysics Data System (ADS)

Zirks, Eleen; Goodman-Tchernov, Beverly; Krom, Michael D.

2017-04-01

Understanding the nature and evolution of past Oxygen Minimum Zones (OMZ) are of great interest since they shed light on expanding OMZ's in the modern ocean. Furthermore, as we alter the nutrient fluxes emitted from modern major rivers there are known to major, often undesirable, consequence to the oxygen status in the marine basin both proximal and distal to the river discharge (e.g. Mississippi). Recent Global Climate Model (GCM) of the nature and development of S-1 sapropel in the Eastern Mediterranean (EMS) have suggested a four layer system with a well-ventilated surface water (0-200 m) and intermediate water (200-500 m), a partially ventilated sapropel intermediate water (SIW, 500-1800 m) and long-term stagnant deep water below 1800 m. Our conceptual model is of the partially ventilated SIW flowing from Adriatic/Aegean towards the east and becoming depleted in oxygen as it is increasingly influenced by descending labile organic matter derived directly or indirectly from the Nile flood. Most studies of sapropels in the EMS concentrate on the deep water below 1800 m water depths with only a limited number of samples having been taken from the SIW layer. In this review, we focus on the several stations sampled between 500-1800 m and particularly on stations in the Eastern Aegean and Levantine basins. Data has been obtained from sediment cores (9509, 9501, SL112, PS009PC, SL123, 562MC) in which either benthic foraminifera fauna or redox sensitive trace metals (RSTM) data have been measured. The Shannon-Weaver diversity index and the Oxygen Index have been calculated on the benthic foraminifera fauna. These cores reveal a distinct pattern in onset and offset of sapropel S1 and in the interruption of the sapropel at 8.2 ka BP. The onset of S1 was earlier in the shallower water depths consistent with greater respiration rates from progressively less labile organic matter dropping from the photic zone. There was a clear spatial trend in intensity of the OMZ with benthic foraminifera surviving in SIW throughout S1 offshore Libya (562MC) and close to Crete (SL123) nearer the source of SIW. By contrast the diversity is reduced and in case of 562MC the Oxygen Index reached zero close to the Israeli coast and under the direct influence of the Nile. There was an observed correlation between the V/Al ratio (PS009PC), a redox sensitive trace metal used as an indicator for sub-oxic conditions in the water column and the calculated Oxygen Index as well as diversity on benthic foraminifera (SL112). Our study also shows that the intensity of S1 sapropel was greater in this region between its onset and the 8.2 interruption, than in the period from 8.2 to the end of S1. Indeed, close to Cyprus (9501) sapropel S1 ends at 8.2 ka BP and doesn't have a second sapropelic part.

Everolimus and Lenalidomide in Treating Patients With Relapsed or Refractory Non-Hodgkin or Hodgkin Lymphoma

ClinicalTrials.gov

2018-02-07

Adult Nasal Type Extranodal NK/T-cell Lymphoma; Anaplastic Large Cell Lymphoma; Angioimmunoblastic T-cell Lymphoma; Extranodal Marginal Zone B-cell Lymphoma of Mucosa-associated Lymphoid Tissue; Hepatosplenic T-cell Lymphoma; Nodal Marginal Zone B-cell Lymphoma; Peripheral T-cell Lymphoma; Post-transplant Lymphoproliferative Disorder; Recurrent Adult Burkitt Lymphoma; Recurrent Adult Diffuse Large Cell Lymphoma; Recurrent Adult Hodgkin Lymphoma; Recurrent Adult T-cell Leukemia/Lymphoma; Recurrent Grade 1 Follicular Lymphoma; Recurrent Grade 2 Follicular Lymphoma; Recurrent Grade 3 Follicular Lymphoma; Recurrent Mantle Cell Lymphoma; Recurrent Mycosis Fungoides/Sezary Syndrome; Splenic Marginal Zone Lymphoma; Waldenstrom Macroglobulinemia

Yttrium Y 90 Ibritumomab Tiuxetan, Fludarabine, Radiation Therapy, and Donor Stem Cell Transplant in Treating Patients With Relapsed or Refractory Non-Hodgkin's Lymphoma

ClinicalTrials.gov

2017-04-17

B-cell Chronic Lymphocytic Leukemia; Nodal Marginal Zone B-cell Lymphoma; Recurrent Adult Burkitt Lymphoma; Recurrent Adult Diffuse Large Cell Lymphoma; Recurrent Adult Diffuse Mixed Cell Lymphoma; Recurrent Adult Diffuse Small Cleaved Cell Lymphoma; Recurrent Adult Grade III Lymphomatoid Granulomatosis; Recurrent Adult Immunoblastic Large Cell Lymphoma; Recurrent Adult Lymphoblastic Lymphoma; Recurrent Grade 1 Follicular Lymphoma; Recurrent Grade 2 Follicular Lymphoma; Recurrent Grade 3 Follicular Lymphoma; Recurrent Mantle Cell Lymphoma; Recurrent Marginal Zone Lymphoma; Recurrent Small Lymphocytic Lymphoma; Splenic Marginal Zone Lymphoma; Waldenström Macroglobulinemia

Kinematic Reconstruction of the Costa Rican Margin: Evidence for Discontinuities in Deformation Across the Margin

NASA Astrophysics Data System (ADS)

Gose, B.; Bangs, N. L.; McIntosh, K. D.

2016-12-01

Recently acquired 3D seismic reflection data shows that both in-sequence and out-of sequence faults makeup the interior structure of the Costa Rican convergent margin. Recent studies have found evidence for a phase of accretion that led to the formation of a series of thrust-bounded folds that are easily observable within the margin-wedge fabric. Along a primary 2D transect through the center of the 3D survey, faults partition the outer 23km of the margin into 8 fault-bounded segments that can be divided into two characteristic zones, those closest to the trench (S1-S3) and those furthest (S4-S8) separated by a slope break 10 km from the trench (Fig 1). To better understand the observed structure, each segment was characterized as a fault-propagation fold and geometrically modeled using Paradigm's Geosec 2D software. Kinematic flexural slip modules were applied in order to perform bed-length balancing and generate a geologic reconstruction of the margin. Results show the section of the margin spanning from 3-23km from the deformation front has experienced 27.5% shortening, assuming the interpreted horizons were initially flat and continuous. The individual values for percent shortening are not consistent across the margin but distributed into two zones each with progressively increasing strain in the landward direction. Zone 2 (landward) begins with a percent shortening for S8 at 22% and linearly decreases to 2% shortening as you move seaward to S4. The Zone 1-2 boundary is marked by a slope break coinciding with an increase in percent shortening (S3,15%) followed by less shortening seaward (9%, 8%). Shortening and the associated strain is focused at the landward side of the two zones, within S3 and S8. We conclude that the Costa Rican margin has some degree of mechanical partitioning, with a notable discontinuity in strain patterns occurring 10 km from the trench.

Expression of seasonal and ENSO forcing in climatic variability at lower than ENSO frequencies: evidence from Pleistocene marine varves off California

USGS Publications Warehouse

Anderson, R.Y.; Linsley, B.K.; Gardner, J.V.

1990-01-01

Upper Pleistocene marine sediments along the upper continental slope off northern and central California contain alternations of varved and bioturbated sediments and associated changes in biota and sediment composition. These alternations can be related to conditions that accompany El Nin??o and anti-El Nin??o (ENSO) circulation. Anti-El Nin??o conditions are characterized by increased upwelling and productivity and by low concentrations of dissolved oxygen in the oxygen minimum zone that resulted in varve preservation. El Nin??o conditions are characterized by little or no upwelling, low productivity, and higher concentrations of dissolved oxygen that resulted in zones of bioturbation. Alternations of varves and zones of bioturbation, that range from decades to millennia, occur through the upper Pleistocene section. The inferred long-term alternations in El Nin??o and anti-El Nin??o conditions appear to be a re-expression of ENSO's primary 3-7 year cycle. Decadal to millennial cycles of productivity associated with El Nin??o and anti-El Nin??o conditions may have served as a "carbon pump" and transferred atmospheric CO2 to the marine reservoir. Changes in sediment composition and organisms associated with El Nin??o or anti-El Nin??o conditions can be related to both seasonal and ENSO phenomena. Expression of these changes at lower-than-ENSO frequencies may be partly explained by adding the effects of seasonal variability to effects produced by a self-oscillating ENSO system. However, deterministic mechanisms, including solar modulation of ENSO, may also contribute to long-term alternations of El Nin??o and anti-El Nin??o conditions. ?? 1990.

Extensional collapse along the Sevier Desert reflection, northern Sevier Desert basin, western United States

NASA Astrophysics Data System (ADS)

Coogan, James C.; Decelles, Peter G.

1996-10-01

Newly released and previously published seismic reflection data from the northern Sevier Desert basin provide a complete seismic transect between the tilted western margin of the basin and the eastern breakaway zone. When tied to well and surface age data, the transect delineates a continuum of extensional fault and basin fill geometries that developed between late Oligocene and Pleistocene time across the basin. A minimum of 18 km of top-to-the-west normal displacement is estimated across the Sevier Desert from only the most conspicuous growth geometries and offsets across listric normal faults that sole downward into the Sevier Desert reflection (SDR). The SDR clearly marks a normal fault zone beneath the entire basin, where stratal truncations are imaged for 50% of the 39 km length of the reflection east of the Cricket Mountains block. Restoration of extensional displacement along this entire 39 km fault length is necessary to reconstruct the pre-Oligocene configuration and erosion level of Sevier thrust sheets across the Sevier Desert area. The SDR normal fault zone underlies the former topographic crest of the Sevier orogenic belt, where it accommodated extensional collapse after cessation of regional contractile tectonism.

Widespread gas hydrate instability on the upper U.S. Beaufort margin

USGS Publications Warehouse

Phrampus, Benjamin J.; Hornbach, Matthew J.; Ruppel, Carolyn D.; Hart, Patrick E.

2014-01-01

The most climate-sensitive methane hydrate deposits occur on upper continental slopes at depths close to the minimum pressure and maximum temperature for gas hydrate stability. At these water depths, small perturbations in intermediate ocean water temperatures can lead to gas hydrate dissociation. The Arctic Ocean has experienced more dramatic warming than lower latitudes, but observational data have not been used to study the interplay between upper slope gas hydrates and warming ocean waters. Here we use (a) legacy seismic data that constrain upper slope gas hydrate distributions on the U.S. Beaufort Sea margin, (b) Alaskan North Slope borehole data and offshore thermal gradients determined from gas hydrate stability zone thickness to infer regional heat flow, and (c) 1088 direct measurements to characterize multidecadal intermediate ocean warming in the U.S. Beaufort Sea. Combining these data with a three-dimensional thermal model shows that the observed gas hydrate stability zone is too deep by 100 to 250 m. The disparity can be partially attributed to several processes, but the most important is the reequilibration (thinning) of gas hydrates in response to significant (~0.5°C at 2σ certainty) warming of intermediate ocean temperatures over 39 years in a depth range that brackets the upper slope extent of the gas hydrate stability zone. Even in the absence of additional ocean warming, 0.44 to 2.2 Gt of methane could be released from reequilibrating gas hydrates into the sediments underlying an area of ~5–7.5 × 103 km2 on the U.S. Beaufort Sea upper slope during the next century.

Lenalidomide Maintenance Therapy After High Dose BEAM With or Without Rituximab

ClinicalTrials.gov

2018-01-13

Adult Nasal Type Extranodal NK/T-cell Lymphoma; Anaplastic Large Cell Lymphoma; Angioimmunoblastic T-cell Lymphoma; Extranodal Marginal Zone B-cell Lymphoma of Mucosa-associated Lymphoid Tissue; Nodal Marginal Zone B-cell Lymphoma; Peripheral T-cell Lymphoma; Recurrent Adult Burkitt Lymphoma; Recurrent Adult Diffuse Large Cell Lymphoma; Recurrent Adult Diffuse Mixed Cell Lymphoma; Recurrent Adult Diffuse Small Cleaved Cell Lymphoma; Recurrent Adult Grade III Lymphomatoid Granulomatosis; Recurrent Adult Immunoblastic Large Cell Lymphoma; Recurrent Adult Lymphoblastic Lymphoma; Recurrent Cutaneous T-cell Non-Hodgkin Lymphoma; Recurrent Grade 1 Follicular Lymphoma; Recurrent Grade 2 Follicular Lymphoma; Recurrent Grade 3 Follicular Lymphoma; Recurrent Mantle Cell Lymphoma; Recurrent Marginal Zone Lymphoma; Recurrent Mycosis Fungoides/Sezary Syndrome; Recurrent Small Lymphocytic Lymphoma; Splenic Marginal Zone Lymphoma; Stage III Adult Burkitt Lymphoma; Stage III Adult Diffuse Large Cell Lymphoma; Stage III Adult Diffuse Mixed Cell Lymphoma; Stage III Adult Diffuse Small Cleaved Cell Lymphoma; Stage III Adult Immunoblastic Large Cell Lymphoma; Stage III Adult Lymphoblastic Lymphoma; Stage III Cutaneous T-cell Non-Hodgkin Lymphoma; Stage III Grade 1 Follicular Lymphoma; Stage III Grade 2 Follicular Lymphoma; Stage III Grade 3 Follicular Lymphoma; Stage III Mantle Cell Lymphoma; Stage III Marginal Zone Lymphoma; Stage III Mycosis Fungoides/Sezary Syndrome; Stage III Small Lymphocytic Lymphoma; Stage IV Adult Burkitt Lymphoma; Stage IV Adult Diffuse Large Cell Lymphoma; Stage IV Adult Diffuse Mixed Cell Lymphoma; Stage IV Adult Diffuse Small Cleaved Cell Lymphoma; Stage IV Adult Immunoblastic Large Cell Lymphoma; Stage IV Adult Lymphoblastic Lymphoma; Stage IV Cutaneous T-cell Non-Hodgkin Lymphoma; Stage IV Grade 1 Follicular Lymphoma; Stage IV Grade 2 Follicular Lymphoma; Stage IV Grade 3 Follicular Lymphoma; Stage IV Mantle Cell Lymphoma; Stage IV Marginal Zone Lymphoma; Stage IV Mycosis Fungoides/Sezary Syndrome; Stage IV Small Lymphocytic Lymphoma; Waldenström Macroglobulinemia

Style of extensional tectonism during rifting, Red Sea and Gulf of Aden

USGS Publications Warehouse

Bohannon, R.G.

1989-01-01

Geologic and geophysical studies from the Arabian continental margin in the southern Red Sea and LANDSAT analysis of the northern Somalia margin in the Gulf of Aden suggest that the early continental rifts were long narrow features that formed by extension on closely spaced normal faults above moderate- to shallow-dipping detachments with break-away zones defining one rift flank and root zones under the opposing rift flank. The rift flanks presently form the opposing continental margins across each ocean basin. The detachment on the Arabian margin dips gently to the west, with a breakaway zone now eroded above the deeply dissected terrain of the Arabian escarpment. A model is proposed in which upper crustal breakup occurs on large detachment faults that have a distinct polarity. -from Author

Growth patterns of an intertidal gastropod as revealed by oxygen isotope analysis

NASA Astrophysics Data System (ADS)

Bean, J. R.; Hill, T. M.; Guerra, C.

2007-12-01

The size and morphology of mollusk shells are affected by environmental conditions. As a result, it is difficult to assess growth rate, population age structure, shell morphologies associated with ontogenetic stages, and to compare life history patterns across various environments. Oxygen isotope analysis is a useful tool for estimating minimum ages and growth rates of calcium carbonate secreting organisms. Calcite shell material from members of two northern California populations of the intertidal muricid gastropod Acanthinucella spirata was sampled for isotopic analysis. Individual shells were sampled from apex to margin, thus providing a sequential record of juvenile and adult growth. A. spirata were collected from a sheltered habitat in Tomales Bay and from an exposed reef in Bolinas. Abiotic factors, such as temperature, wave exposure, and substrate consistency, and biotic composition differ significantly between these sites, possibly resulting in local adaptations and variation in life history and growth patterns. Shell morphology of A. spirata changes with age as internal shell margin thickenings of denticle rows associated with external growth bands are irregularly accreted. It is not known when, either seasonally and/or ontogentically, these thickenings and bands form or whether inter or intra-populational variation exists. Preliminary results demonstrate the seasonal oxygen isotopic variability present at the two coastal sites, indicating 5-6 degC changes from winter to summertime temperatures; these data are consistent with local intertidal temperature records. Analysis of the seasonal patterns indicate that: 1) differences in growth rate and seasonal growth patterns at different ontogenetic stages within populations, and 2) differences in growth patterns and possibly age structure between the two A. spirata populations. These findings indicate that isotopic analyses, in addition to field observations and morphological measurements, are necessary to assess life history strategies and compare population dynamics under varying environmental conditions.

Spatial variability of upper ocean POC export in the Bay of Bengal and the Indian Ocean determined using particle-reactive 234Th

NASA Astrophysics Data System (ADS)

Subha Anand, S.; Rengarajan, R.; Sarma, V. V. S. S.; Sudheer, A. K.; Bhushan, R.; Singh, S. K.

2017-05-01

The northern Indian Ocean is globally significant for its seasonally reversing winds, upwelled nutrients, high biological production, and expanding oxygen minimum zones. The region acts as sink and source for atmospheric CO2. However, the efficiency of the biological carbon pump to sequester atmospheric CO2 and export particulate organic carbon from the surface is not well known. To quantify the upper ocean carbon export flux and to estimate the efficiency of biological carbon pump in the Bay of Bengal and the Indian Ocean, seawater profiles of total 234Th were measured from surface to 300 m depth at 13 stations from 19.9°N to 25.3°S in a transect along 87°E, during spring intermonsoon period (March-April 2014). Results showed enhanced in situ primary production in the equatorial Indian Ocean and the central Bay of Bengal and varied from 13.2 to 173.8 mmol C m-2 d-1. POC export flux in this region varied from 0 to 7.7 mmol C m-2 d-1. Though high carbon export flux was found in the equatorial region, remineralization of organic carbon in the surface and subsurface waters considerably reduced organic carbon export in the Bay of Bengal. Annually recurring anticyclonic eddies enhanced organic carbon utilization and heterotrophy. Oxygen minimum zone developed due to stratification and poor ventilation was intensified by subsurface remineralization. 234Th-based carbon export fluxes were not comparable with empirical statistical model estimates based on primary production and temperature. Region-specific refinement of model parameters is required to accurately predict POC export fluxes.

Metagenomic analysis of size-fractionated picoplankton in a marine oxygen minimum zone

PubMed Central

Ganesh, Sangita; Parris, Darren J; DeLong, Edward F; Stewart, Frank J

2014-01-01

Marine oxygen minimum zones (OMZs) support diverse microbial communities with roles in major elemental cycles. It is unclear how the taxonomic composition and metabolism of OMZ microorganisms vary between particle-associated and free-living size fractions. We used amplicon (16S rRNA gene) and shotgun metagenome sequencing to compare microbial communities from large (>1.6 μm) and small (0.2–1.6 μm) filter size fractions along a depth gradient in the OMZ off Chile. Despite steep vertical redox gradients, size fraction was a significantly stronger predictor of community composition compared to depth. Phylogenetic diversity showed contrasting patterns, decreasing towards the anoxic OMZ core in the small size fraction, but exhibiting maximal values at these depths within the larger size fraction. Fraction-specific distributions were evident for key OMZ taxa, including anammox planctomycetes, whose coding sequences were enriched up to threefold in the 0.2–1.6 μm community. Functional gene composition also differed between fractions, with the >1.6 μm community significantly enriched in genes mediating social interactions, including motility, adhesion, cell-to-cell transfer, antibiotic resistance and mobile element activity. Prokaryotic transposase genes were three to six fold more abundant in this fraction, comprising up to 2% of protein-coding sequences, suggesting that particle surfaces may act as hotbeds for transposition-based genome changes in marine microbes. Genes for nitric and nitrous oxide reduction were also more abundant (three to seven fold) in the larger size fraction, suggesting microniche partitioning of key denitrification steps. These results highlight an important role for surface attachment in shaping community metabolic potential and genome content in OMZ microorganisms. PMID:24030599

Size-fraction partitioning of community gene transcription and nitrogen metabolism in a marine oxygen minimum zone.

PubMed

Ganesh, Sangita; Bristow, Laura A; Larsen, Morten; Sarode, Neha; Thamdrup, Bo; Stewart, Frank J

2015-12-01

The genetic composition of marine microbial communities varies at the microscale between particle-associated (PA; >1.6 μm) and free-living (FL; 0.2-1.6 μm) niches. It remains unclear, however, how metabolic activities differ between PA and FL fractions. We combined rate measurements with metatranscriptomics to quantify PA and FL microbial activity in the oxygen minimum zone (OMZ) of the Eastern Tropical North Pacific, focusing on dissimilatory processes of the nitrogen (N) cycle. Bacterial gene counts were 8- to 15-fold higher in the FL compared with the PA fraction. However, rates of all measured N cycle processes, excluding ammonia oxidation, declined significantly following particle (>1.6 μm) removal. Without particles, rates of nitrate reduction to nitrite (1.5-9.4nMNd(-1)) fell to zero and N2 production by denitrification (0.5-1.7nMNd(-1)) and anammox (0.3-1.9nMNd(-1)) declined by 53-85%. The proportional representation of major microbial taxa and N cycle gene transcripts in metatranscriptomes followed fraction-specific trends. Transcripts encoding nitrate reductase were uniform among PA and FL fractions, whereas anammox-associated transcripts were proportionately enriched up to 15-fold in the FL fraction. In contrast, transcripts encoding enzymes for N2O and N2 production by denitrification were enriched up to 28-fold in PA samples. These patterns suggest that the majority of N cycle activity, excluding N2O and N2 production by denitrification, is confined to a FL majority that is critically dependent on access to particles, likely as a source of organic carbon and inorganic N. Variable particle distributions may drive heterogeneity in N cycle activity and gene expression in OMZs.

Denitrifier Community in the Oxygen Minimum Zone of a Subtropical Deep Reservoir

PubMed Central

Yu, Zheng; Yang, Jun; Liu, Lemian

2014-01-01

Denitrification is an important pathway for nitrogen removal from aquatic systems and this could benefit water quality. However, little is known about the denitrifier community composition and key steps of denitrification in the freshwater environments, and whether different bacteria have a role in multiple processes of denitrification reduction. In this study, quantitative PCR, quantitative RT-PCR, clone library and 454 pyrosequencing were used together to investigate the bacterial and denitrifier community in a subtropical deep reservoir during the strongly stratified period. Our results indicated that the narG gene recorded the highest abundance among the denitrifying genes (2.76×109 copies L−1 for DNA and 4.19×108 copies L−1 for RNA), and the lowest value was nosZ gene (7.56×105 copies L−1 for DNA and undetected for RNA). The RNA: DNA ratios indicated that narG gene was the most active denitrifying gene in the oxygen minimum zone of Dongzhen Reservoir. Further, α-, β- and γ- Proteobacteria were the overwhelmingly dominant classes of denitrifier communities. Each functional gene had its own dominant groups which were different at the genus level: the narG gene was dominated by Albidiferax, while nirS gene was dominated by Dechloromonas. The main OTU of nirK gene was Rhodopseudomonas palustris, but for norB and nosZ genes, they were Bacillus and Bradyrhizobium, respectively. These results contribute to the understanding of linkages between denitrifier community, function and how they work together to complete the denitrification process. Studies on denitrifier community and activity may be useful in managing stratified reservoirs for the ecosystem services and aiding in constructing nitrogen budgets. PMID:24664112

Metagenomic analysis of size-fractionated picoplankton in a marine oxygen minimum zone.

PubMed

Ganesh, Sangita; Parris, Darren J; DeLong, Edward F; Stewart, Frank J

2014-01-01

Marine oxygen minimum zones (OMZs) support diverse microbial communities with roles in major elemental cycles. It is unclear how the taxonomic composition and metabolism of OMZ microorganisms vary between particle-associated and free-living size fractions. We used amplicon (16S rRNA gene) and shotgun metagenome sequencing to compare microbial communities from large (>1.6 μm) and small (0.2-1.6 μm) filter size fractions along a depth gradient in the OMZ off Chile. Despite steep vertical redox gradients, size fraction was a significantly stronger predictor of community composition compared to depth. Phylogenetic diversity showed contrasting patterns, decreasing towards the anoxic OMZ core in the small size fraction, but exhibiting maximal values at these depths within the larger size fraction. Fraction-specific distributions were evident for key OMZ taxa, including anammox planctomycetes, whose coding sequences were enriched up to threefold in the 0.2-1.6 μm community. Functional gene composition also differed between fractions, with the >1.6 μm community significantly enriched in genes mediating social interactions, including motility, adhesion, cell-to-cell transfer, antibiotic resistance and mobile element activity. Prokaryotic transposase genes were three to six fold more abundant in this fraction, comprising up to 2% of protein-coding sequences, suggesting that particle surfaces may act as hotbeds for transposition-based genome changes in marine microbes. Genes for nitric and nitrous oxide reduction were also more abundant (three to seven fold) in the larger size fraction, suggesting microniche partitioning of key denitrification steps. These results highlight an important role for surface attachment in shaping community metabolic potential and genome content in OMZ microorganisms.

Size-fraction partitioning of community gene transcription and nitrogen metabolism in a marine oxygen minimum zone

PubMed Central

Ganesh, Sangita; Bristow, Laura A; Larsen, Morten; Sarode, Neha; Thamdrup, Bo; Stewart, Frank J

2015-01-01

The genetic composition of marine microbial communities varies at the microscale between particle-associated (PA; >1.6 μm) and free-living (FL; 0.2–1.6 μm) niches. It remains unclear, however, how metabolic activities differ between PA and FL fractions. We combined rate measurements with metatranscriptomics to quantify PA and FL microbial activity in the oxygen minimum zone (OMZ) of the Eastern Tropical North Pacific, focusing on dissimilatory processes of the nitrogen (N) cycle. Bacterial gene counts were 8- to 15-fold higher in the FL compared with the PA fraction. However, rates of all measured N cycle processes, excluding ammonia oxidation, declined significantly following particle (>1.6 μm) removal. Without particles, rates of nitrate reduction to nitrite (1.5–9.4nMNd−1) fell to zero and N2 production by denitrification (0.5–1.7nMNd−1) and anammox (0.3–1.9nMNd−1) declined by 53–85%. The proportional representation of major microbial taxa and N cycle gene transcripts in metatranscriptomes followed fraction-specific trends. Transcripts encoding nitrate reductase were uniform among PA and FL fractions, whereas anammox-associated transcripts were proportionately enriched up to 15-fold in the FL fraction. In contrast, transcripts encoding enzymes for N2O and N2 production by denitrification were enriched up to 28-fold in PA samples. These patterns suggest that the majority of N cycle activity, excluding N2O and N2 production by denitrification, is confined to a FL majority that is critically dependent on access to particles, likely as a source of organic carbon and inorganic N. Variable particle distributions may drive heterogeneity in N cycle activity and gene expression in OMZs. PMID:25848875

Denitrifier community in the oxygen minimum zone of a subtropical deep reservoir.

PubMed

Yu, Zheng; Yang, Jun; Liu, Lemian

2014-01-01

Denitrification is an important pathway for nitrogen removal from aquatic systems and this could benefit water quality. However, little is known about the denitrifier community composition and key steps of denitrification in the freshwater environments, and whether different bacteria have a role in multiple processes of denitrification reduction. In this study, quantitative PCR, quantitative RT-PCR, clone library and 454 pyrosequencing were used together to investigate the bacterial and denitrifier community in a subtropical deep reservoir during the strongly stratified period. Our results indicated that the narG gene recorded the highest abundance among the denitrifying genes (2.76×109 copies L-1 for DNA and 4.19×108 copies L-1 for RNA), and the lowest value was nosZ gene (7.56×105 copies L-1 for DNA and undetected for RNA). The RNA: DNA ratios indicated that narG gene was the most active denitrifying gene in the oxygen minimum zone of Dongzhen Reservoir. Further, α-, β- and γ- Proteobacteria were the overwhelmingly dominant classes of denitrifier communities. Each functional gene had its own dominant groups which were different at the genus level: the narG gene was dominated by Albidiferax, while nirS gene was dominated by Dechloromonas. The main OTU of nirK gene was Rhodopseudomonas palustris, but for norB and nosZ genes, they were Bacillus and Bradyrhizobium, respectively. These results contribute to the understanding of linkages between denitrifier community, function and how they work together to complete the denitrification process. Studies on denitrifier community and activity may be useful in managing stratified reservoirs for the ecosystem services and aiding in constructing nitrogen budgets.

Pleistocene Thermocline Reconstruction and Oxygen Minimum Zone Evolution in the Maldives

NASA Astrophysics Data System (ADS)

Yu, S. M.; Wright, J.

2017-12-01

Drift deposits of the southern flank the Kardiva Channel in the eastern Inner Sea of the Maldives provide a complete record of Pleistocene water column changes in conjunction with monsoon cyclicity and fluctuations in the current system. We sampled IODP Site 359-U1467 to reconstruct water column using foraminiferal stable isotope records. This unlithified lithostratigraphic unit is rich in well-preserved microfossils and has an average sedimentation rate of 3.4 cm/yr. Marine Isotope Stages 1-6 were identified and show higher sedimentation rates during the interglacial sections approaching 6 cm/kyr. We present the δ13C and δ18O record of planktonic and benthic foraminiferal species taken at intervals of 3 cm. Globigerinoides ruber was used to constrain surface conditions. The thermocline dwelling species, Globorotalia menardii, was chosen to monitor fluctuations in the thermocline compared to the mixed layer. Lastly, the δ13C of the benthic species, Cibicidoides subhaidingerii and Planulina renzi, reveal changes to the bottom water ventilation and expansion of oxygen minimum zones over time. All three taxa recorded similar changes in δ18O over the glacial/interglacial cycles which is remarkable given the large sea level change ( 120 m) and the relatively shallow water depth ( 450 m). There is a small increase in the δ13C gradient during the glacial intervals which might reflect less ventilated bottom waters in the Inner Sea. This multispecies approach allows us to better constrain the thermocline hydrography and suggests that changes in the OMZ thickness are driven by the intensification of the monsoon cycles while painting a more cohesive picture to the changes in the water column structure.

Hydrographic and fish larvae distribution during the "Godzilla El Niño 2015-2016" in the northern end of the shallow oxygen minimum zone of the Eastern Tropical Pacific Ocean

NASA Astrophysics Data System (ADS)

Sánchez-Velasco, L.; Beier, E.; Godínez, V. M.; Barton, E. D.; Santamaría-del-Angel, E.; Jiménez-Rosemberg, S. P. A.; Marinone, S. G.

2017-03-01

Based on hydrographic data and vertical distributions of tropical species of fish larvae (Diogenichthys laternatus, Vinciguerria lucetia, Bregmaceros bathymaster, and Auxis spp.), effects of "Godzilla El Niño 2015-2016" in the shallow oxygen minimum zone off Mexico were analyzed. Zooplankton samples were collected during four cruises, before (February 2010 and April 2012) and during (June 2015 and March 2016) the warm event. Temporal series of sea surface temperature revealed that June 2015 was the warmest June of the last years. Conservative temperature was >2°C higher than normal in the surface mixed layer, and the suboxic layer (4.4 µmol/kg) reached as shallow as 100 m depth. Unexpected results were that larval abundances were relatively high during the warm event, unlike zooplankton volumes, which declined. Before the warm event, V. lucetia and Auxis spp. were more abundant in the surface mixed layer, while B. bathymaster and D. laternatus dominated in the thermocline and shallow hypoxic layer (44 µmol/kg). However, during the event in June 2015, all species were most abundant in the surface mixed layer, which implied that the species adapted to hypoxia had inverted their normal pattern of distribution, possibly as consequence of the rise of the suboxic layer; however, further observations are required to confirm this generality. Results showed no dramatic change in the total larval abundance during the warm event. Nevertheless, a differential response in their vertical distribution was evident in association with changes in the depth of the shallow hypoxic and suboxic layers. This might indicate adaptability of tropical species to prolonged periods of warming in the oceans.

Nitrogen isotope effects induced by anammox bacteria

PubMed Central

Brunner, Benjamin; Contreras, Sergio; Lehmann, Moritz F.; Matantseva, Olga; Rollog, Mark; Kalvelage, Tim; Klockgether, Gabriele; Lavik, Gaute; Jetten, Mike S. M.; Kartal, Boran; Kuypers, Marcel M. M.

2013-01-01

Nitrogen (N) isotope ratios (15N/14N) provide integrative constraints on the N inventory of the modern ocean. Anaerobic ammonium oxidation (anammox), which converts ammonium and nitrite to dinitrogen gas (N2) and nitrate, is an important fixed N sink in marine ecosystems. We studied the so far unknown N isotope effects of anammox in batch culture experiments. Anammox preferentially removes 14N from the ammonium pool with an isotope effect of +23.5‰ to +29.1‰, depending on factors controlling reversibility. The N isotope effects during the conversion of nitrite to N2 and nitrate are (i) inverse kinetic N isotope fractionation associated with the oxidation of nitrite to nitrate (−31.1 ± 3.9‰), (ii) normal kinetic N isotope fractionation during the reduction of nitrite to N2 (+16.0 ± 4.5‰), and (iii) an equilibrium N isotope effect between nitrate and nitrite (−60.5 ± 1.0‰), induced when anammox is exposed to environmental stress, leading to the superposition of N isotope exchange effects upon kinetic N isotope fractionation. Our findings indicate that anammox may be responsible for the unresolved large N isotope offsets between nitrate and nitrite in oceanic oxygen minimum zones. Irrespective of the extent of N isotope exchange between nitrate and nitrite, N removed from the combined nitrite and nitrate (NOx) pool is depleted in 15N relative to NOx. This net N isotope effect by anammox is superimposed on the N isotope fractionation by the co-occurring reduction of nitrate to nitrite in suboxic waters, possibly enhancing the overall N isotope effect for N loss from oxygen minimum zones. PMID:24191043

Dissolved oxygen: Chapter 6

USGS Publications Warehouse

Senn, David; Downing-Kunz, Maureen; Novick, Emily

2016-01-01

Dissolved oxygen (DO) concentration serves as an important indicator of estuarine habitat condition, because all aquatic macro-organisms require some minimum DO level to survive and prosper. The instantaneous DO concentration, measured at a specific location in the water column, results from a balance between multiple processes that add or remove oxygen (Figure 6.1): primary production produces O2; aerobic respiration in the water column and sediments consumes O2; abiotic or microbially-mediated biogeochemical reactions utilize O2 as an oxidant (e.g., oxidation of ammonium, sulfide, and ferrous iron); O2 exchange occurs across the air:water interface in response to under- or oversaturated DO concentrations in the water column; and water currents and turbulent mixing transport DO into and out of zones in the water column. If the oxygen loss rate exceeds the oxygen production or input rate, DO concentration decreases. When DO losses exceed production or input over a prolonged enough period of time, hypoxia ((<2-3 mg/L) or anoxia can develop. Persistent hypoxia or anoxia causes stress or death in aquatic organism populations, or for organisms that can escape a hypoxic or anoxic area, the loss of habitat. In addition, sulfide, which is toxic to aquatic organisms and causes odor problems, escapes from sediments under low oxygen conditions. Low dissolved oxygen is a common aquatic ecosystem response to elevated organic

Large fluctuations of dissolved oxygen in the Indian and Pacific oceans during Dansgaard-Oeschger oscillations caused by variations of North Atlantic Deep Water subduction

NASA Astrophysics Data System (ADS)

Schmittner, Andreas; Galbraith, Eric D.; Hostetler, Steven W.; Pedersen, Thomas F.; Zhang, Rong

2007-09-01

Paleoclimate records from glacial Indian and Pacific oceans sediments document millennial-scale fluctuations of subsurface dissolved oxygen levels and denitrification coherent with North Atlantic temperature oscillations. Yet the mechanism of this teleconnection between the remote ocean basins remains elusive. Here we present model simulations of the oxygen and nitrogen cycles that explain how changes in deepwater subduction in the North Atlantic can cause large and synchronous variations of oxygen minimum zones throughout the Northern Hemisphere of the Indian and Pacific oceans, consistent with the paleoclimate records. Cold periods in the North Atlantic are associated with reduced nutrient delivery to the upper Indo-Pacific oceans, thereby decreasing productivity. Reduced export production diminishes subsurface respiration of organic matter leading to higher oxygen concentrations and less denitrification. This effect of reduced oxygen consumption dominates at low latitudes. At high latitudes in the Southern Ocean and North Pacific, increased mixed layer depths and steepening of isopycnals improve ocean ventilation and oxygen supply to the subsurface. Atmospheric teleconnections through changes in wind-driven ocean circulation modify this basin-scale pattern regionally. These results suggest that changes in the Atlantic Ocean circulation, similar to those projected by climate models to possibly occur in the centuries to come because of anthropogenic climate warming, can have large effects on marine ecosystems and biogeochemical cycles even in remote areas.

Sensitivity of ocean oxygenation to variations in tropical zonal wind stress magnitude

NASA Astrophysics Data System (ADS)

Ridder, Nina N.; England, Matthew H.

2014-09-01

Ocean oxygenation has been observed to have changed over the past few decades and is projected to change further under global climate change due to an interplay of several mechanisms. In this study we isolate the effect of modified tropical surface wind stress conditions on the evolution of ocean oxygenation in a numerical climate model. We find that ocean oxygenation varies inversely with low-latitude surface wind stress. Approximately one third of this response is driven by sea surface temperature anomalies; the remaining two thirds result from changes in ocean circulation and marine biology. Global mean O2 concentration changes reach maximum values of +4 μM and -3.6 μM in the two most extreme perturbation cases of -30% and +30% wind change, respectively. Localized changes lie between +92 μM under 30% reduced winds and -56 μM for 30% increased winds. Overall, we find that the extent of the global low-oxygen volume varies with the same sign as the wind perturbation; namely, weaker winds reduce the low-oxygen volume on the global scale and vice versa for increased trade winds. We identify two regions, one in the Pacific Ocean off Chile and the other in the Indian Ocean off Somalia, that are of particular importance for the evolution of oxygen minimum zones in the global ocean.

Characterization of oceanic Noctiluca blooms not associated with hypoxia in the Northeastern Arabian Sea.

PubMed

Lotliker, Aneesh A; Baliarsingh, S K; Trainer, Vera L; Wells, Mark L; Wilson, Cara; Udaya Bhaskar, T V S; Samanta, Alakes; Shahimol, S R

2018-04-01

Intense blooms of the heterotrophic dinoflagellate, green Noctiluca scintillans, have been reported annually in the Northern Arabian Sea since the early 2000s. Although not known to produce organic toxins, these blooms are still categorized as a harmful due to their association with massive fish mortalities. Recent work has attributed these blooms to the vertical expansion of the oxygen minimum zone, driven by cultural eutrophication from major coastal cities in western India. As diatoms are preferred prey of green Noctiluca scintillans, more frequent blooms of this mixotroph will likely impact the productivity of important fisheries in the region. The present study uses a satellite algorithm to determine the distribution of both diatom and green Noctiluca blooms in the Northeastern Arabian Sea from 2009 to 2016. The results from shipboard microscopy of phytoplankton community composition were used to validate the satellite estimates. The satellite algorithm showed 76% accuracy for detection of green Noctiluca and 92% for diatoms. Shipboard measurements and data from biogeochemical-Argo floats were used to assess the relationship between oxygen concentrations and green Noctiluca blooms in the Northeastern Arabian Sea. Regardless of the presence of a Noctiluca bloom, the dissolved oxygen in the photic zone was always >70% saturated, with an average oxygen saturation >90%. The variability in the relative abundance of diatoms and green Noctiluca is not correlated with changes in oxygen concentration. These findings provide no evidence that cultural eutrophication has contributed to the decadal scale shifts in plankton composition in the Northeastern Arabian Sea oceanic waters. Conversely, the climatic warming of surface waters would have intensified stratification, thereby reducing net nutrient flux to the photic zone and decreasing silicate to nitrate ratios (Si:N); both factors that could increase the competitive advantage of the mixotroph, green Noctiluca, over diatoms. If so, the decadal-scale trajectory of phytoplankton community composition in the Northeastern Arabian Sea may be a harbinger of future climate-driven change in other productive oceanic systems. Copyright © 2018 Elsevier B.V. All rights reserved.

Mesozooplankton production, grazing and respiration in the Bay of Bengal: Implications for net heterotrophy

NASA Astrophysics Data System (ADS)

Fernandes, Veronica; Ramaiah, N.

2016-03-01

Mesozooplankton samples were collected from the mixed layer along a central (along 88°E) and a western transect in the Bay of Bengal during four seasons covered between 2001 and 2006 in order to investigate spatio-temporal variability in their biomass. At these stations, grazing and respiration rates were measured from live zooplankton hauled in from the surface during December 2005. Akin to the mesozooplankton "paradox" in the central and eastern Arabian Sea, biomass in the mixed layer was more or less invariant in the central and western Bay of Bengal, even as the chl a showed marginal temporal variation. By empirical equation, the mesozooplankton production rate calculated to be 70-246 mg C m- 2 d- 1 is on par with the Arabian Sea. Contrary to the conventional belief, mesozooplankton grazing impact was up to 83% on primary production (PP). Low PP coupled with very high zooplankton production (70% of PP) along with abundant bacterial production (50% of the PP; Ramaiah et al., 2009) is likely to render the Bay of Bengal net heterotrophic, especially during the spring intermonsoon. Greater estimates of fecal pellet-carbon egestion by mesozooplankton compared to the average particulate organic carbon flux in sediment traps, implies that much of the matter is recycled by heterotrophic communities in the mixed layer facilitating nutrient regeneration for phytoplankton growth. We also calculated that over a third of the primary production is channelized for basin-wide zooplankton respiration that accounts for 52 Mt C annually. In the current scenario of global warming, if low (primary) productive warm pools like the Bay of Bengal continue to be net heterotrophic, negative implications like enhanced emission of CO2 to the atmosphere, increased particulate flux to the deeper waters and greater utilization of dissolved oxygen resulting in expansion of the existing oxygen minimum zone are imminent.

Insights Into Intermediate Ocean Barium Cycling From Deep-Sea Bamboo Coral Records on the California Margin

NASA Astrophysics Data System (ADS)

LaVigne, M.; Serrato Marks, G.; Freiberger, M. M.; Miller, H. R.; Hill, T. M.; McNichol, A. P.; Lardie Gaylord, M.

2016-02-01

Dissolved barium (BaSW) has been linked to several biogeochemical processes such as the cycling and export of nutrients, organic carbon (Corg), and barite in surface and intermediate oceans. The dynamic nature of barium cycling in the water column has been demonstrated on short timescales (days-weeks) while sedimentary records have documented geologic-scale changes in barite preservation driven by export production. Our understanding of how inter-annual-decadal scale climate variability impacts these biogeochemical processes currently lacks robust instrumental and paleoceanographic records. Recent work has calibrated and demonstrated the reproducibility of a new BaSW proxy in California Current System (CCS) bamboo corals (Ba/Ca) using a coral depth transect spanning the CCS oxygen minimum zone (792-2055m water depth). New `reconnaissance' radiocarbon data identifying the bomb 14C spike in coral proteinaceous nodes and sclerochronological analyses of calcitic internodes are used to assign chronologies to the CCS coral records. Century-long coral records from 900-1500m record 4-7 year long increases in Ba/Ca ( 10-70 nmol/kg BaSW) at depths where rapid barite cycling occurs on day-weekly timescales. The BaSW peaks punctuate the coral records at different time periods and depths and do not coincide with inter-annual/decadal climate transitions (e.g. ENSO/PDO). Stable surface productivity and coral δ15N records indicate that Corg export from CCS surface waters has been relatively constant over the past century. Thus, the inter-annual scale BaSW peaks recorded by the 900-1500m corals more likely reflect periods of decreased barite formation (and/or increased dissolution) via reduced bacterial Corg respiration or barite saturation state. Paleoceanographic BaSW records and continued research on barium cycling in the modern ocean have the potential to elucidate the mechanisms linking intermediate water carbon and barium cycling, climate, and ocean oxygenation in the past.

Variations of mesoscale and large-scale sea ice morphology in the 1984 Marginal Ice Zone Experiment as observed by microwave remote sensing

NASA Technical Reports Server (NTRS)

Campbell, W. J.; Josberger, E. G.; Gloersen, P.; Johannessen, O. M.; Guest, P. S.

1987-01-01

The data acquired during the summer 1984 Marginal Ice Zone Experiment in the Fram Strait-Greenland Sea marginal ice zone, using airborne active and passive microwave sensors and the Nimbus 7 SMMR, were analyzed to compile a sequential description of the mesoscale and large-scale ice morphology variations during the period of June 6 - July 16, 1984. Throughout the experiment, the long ice edge between northwest Svalbard and central Greenland meandered; eddies were repeatedly formed, moved, and disappeared but the ice edge remained within a 100-km-wide zone. The ice pack behind this alternately diffuse and compact edge underwent rapid and pronounced variations in ice concentration over a 200-km-wide zone. The high-resolution ice concentration distributions obtained in the aircraft images agree well with the low-resolution distributions of SMMR images.

DOE Office of Scientific and Technical Information (OSTI.GOV)

McGinnis, J.P.; Karner, G.D.; Driscoll, N.W.

The tectonic and stratigraphic development of the Congo continental margin reflects the timing, magnitude, and distribution of lithospheric extension responsible for its formation. Details of the lithospheric extension process are recorded in the stratigraphic successions preserved along and across the margin. By using the stratal relationships (e.g., onlap, downlap, and truncation) and lithofacies determined from seismic reflection and exploratory well data as input into our basin-modeling strategy, we have developed an integrated approach to determine the relationship between the timing, magnitude, and distribution of lithospheric extension across the margin. Two hinge zones, an eastern and Atlantic hinge formed along themore » Congo margin in response to discrete extensional events occurring from the Berriasian to the Aptian. The eastern hinge zone demarcates the eastern limit of the broadly distributed Berriasian extension. This extension resulted in the formation of deep anoxic, lacustrine systems. In contrast, the Atlantic hinge, located [approximately]90 km west of the eastern hinge, marks the eastern limit of a second phase of extension, which began in the Hauterivian. Consequent footwall uplift and rotation exposed the earlier synrift and prerift stratigraphy to at least wave base causing varying amounts of erosional truncation across the Atlantic hinge zone along much of the Gabon, Congo, and Angola margins. The absence of the Melania Formation across the Congo margin implies that uplift of the Atlantic hinge was relatively minor compared to that across the Angola and Gabon margins. In addition, material eroded from the adjacent and topographically higher hinge zones may in part account for the thick wedge of sediment deposited seaward of the Congo Atlantic hinge. A third phase of extension reactivated both the eastern and Atlantic hinge zones and was responsible for creating the accommodation space for Marnes Noires source rock deposition.« less

Ocean (de)oxygenation from the Last Glacial Maximum to the twenty-first century: insights from Earth System models.

PubMed

Bopp, L; Resplandy, L; Untersee, A; Le Mezo, P; Kageyama, M

2017-09-13

All Earth System models project a consistent decrease in the oxygen content of oceans for the coming decades because of ocean warming, reduced ventilation and increased stratification. But large uncertainties for these future projections of ocean deoxygenation remain for the subsurface tropical oceans where the major oxygen minimum zones are located. Here, we combine global warming projections, model-based estimates of natural short-term variability, as well as data and model estimates of the Last Glacial Maximum (LGM) ocean oxygenation to gain some insights into the major mechanisms of oxygenation changes across these different time scales. We show that the primary uncertainty on future ocean deoxygenation in the subsurface tropical oceans is in fact controlled by a robust compensation between decreasing oxygen saturation (O 2sat ) due to warming and decreasing apparent oxygen utilization (AOU) due to increased ventilation of the corresponding water masses. Modelled short-term natural variability in subsurface oxygen levels also reveals a compensation between O 2sat and AOU, controlled by the latter. Finally, using a model simulation of the LGM, reproducing data-based reconstructions of past ocean (de)oxygenation, we show that the deoxygenation trend of the subsurface ocean during deglaciation was controlled by a combination of warming-induced decreasing O 2sat and increasing AOU driven by a reduced ventilation of tropical subsurface waters.This article is part of the themed issue 'Ocean ventilation and deoxygenation in a warming world'. © 2017 The Author(s).

Expanded oxygen minimum zones during the late Paleocene-early Eocene: Hints from multiproxy comparison and ocean modeling

NASA Astrophysics Data System (ADS)

Zhou, X.; Thomas, E.; Winguth, A. M. E.; Ridgwell, A.; Scher, H.; Hoogakker, B. A. A.; Rickaby, R. E. M.; Lu, Z.

2016-12-01

Anthropogenic warming could well drive depletion of oceanic oxygen in the future. Important insight into the relationship between deoxygenation and warming can be gleaned from the geological record, but evidence is limited because few ocean oxygenation records are available for past greenhouse climate conditions. We use I/Ca in benthic foraminifera to reconstruct late Paleocene through early Eocene bottom and pore water redox conditions in the South Atlantic and Southern Indian Oceans and compare our results with those derived from Mn speciation and the Ce anomaly in fish teeth. We conclude that waters with lower oxygen concentrations were widespread at intermediate depths (1.5-2 km), whereas bottom waters were more oxygenated at the deepest site, in the Southeast Atlantic Ocean (>3 km). Epifaunal benthic foraminiferal I/Ca values were higher in the late Paleocene, especially at low-oxygen sites, than at well-oxygenated modern sites, indicating higher seawater total iodine concentrations in the late Paleocene than today. The proxy-based bottom water oxygenation pattern agrees with the site-to-site O2 gradient as simulated in a comprehensive climate model (Community Climate System Model Version 3), but the simulated absolute dissolved O2 values are low (< 35 µmol/kg), while higher O2 values ( 60-100 µmol/kg) were obtained in an Earth system model (Grid ENabled Integrated Earth system model). Multiproxy data together with improvements in boundary conditions and model parameterization are necessary if the details of past oceanographic oxygenation are to be resolved.

High diversity of ammonia-oxidizing archaea in permanent and seasonal oxygen-deficient waters of the eastern South Pacific.

PubMed

Molina, Verónica; Belmar, Lucy; Ulloa, Osvaldo

2010-09-01

The community structure of putative aerobic ammonia-oxidizing archaea (AOA) was explored in two oxygen-deficient ecosystems of the eastern South Pacific: the oxygen minimum zone off Peru and northern Chile (11°S-20°S), where permanent suboxic and low-ammonium conditions are found at intermediate depths, and the continental shelf off central Chile (36°S), where seasonal oxygen-deficient and relatively high-ammonium conditions develop in the water column, particularly during the upwelling season. The AOA community composition based on the ammonia monooxygenase subunit A (amoA) genes changed according to the oxygen concentration in the water column and the ecosystem studied, showing a higher diversity in the seasonal low-oxygen waters. The majority of the archaeal amoA genotypes was affiliated to the uncultured clusters A (64%) and B (35%), with Cluster A AOA being mainly associated with higher oxygen and ammonium concentrations and Cluster B AOA with permanent oxygen- and ammonium-poor waters. Q-PCR assays revealed that AOA are an abundant community (up to 10(5) amoA copies ml(-1) ), while bacterial amoA genes from β proteobacteria were undetected. Our results thus suggest that a diverse uncultured AOA community, for which, therefore, we do not have any physiological information, to date, is an important component of the nitrifying community in oxygen-deficient marine ecosystems, and particularly in rich coastal upwelling ones. © 2010 Society for Applied Microbiology and Blackwell Publishing Ltd.

Ocean (de)oxygenation from the Last Glacial Maximum to the twenty-first century: insights from Earth System models

NASA Astrophysics Data System (ADS)

Bopp, L.; Resplandy, L.; Untersee, A.; Le Mezo, P.; Kageyama, M.

2017-08-01

All Earth System models project a consistent decrease in the oxygen content of oceans for the coming decades because of ocean warming, reduced ventilation and increased stratification. But large uncertainties for these future projections of ocean deoxygenation remain for the subsurface tropical oceans where the major oxygen minimum zones are located. Here, we combine global warming projections, model-based estimates of natural short-term variability, as well as data and model estimates of the Last Glacial Maximum (LGM) ocean oxygenation to gain some insights into the major mechanisms of oxygenation changes across these different time scales. We show that the primary uncertainty on future ocean deoxygenation in the subsurface tropical oceans is in fact controlled by a robust compensation between decreasing oxygen saturation (O2sat) due to warming and decreasing apparent oxygen utilization (AOU) due to increased ventilation of the corresponding water masses. Modelled short-term natural variability in subsurface oxygen levels also reveals a compensation between O2sat and AOU, controlled by the latter. Finally, using a model simulation of the LGM, reproducing data-based reconstructions of past ocean (de)oxygenation, we show that the deoxygenation trend of the subsurface ocean during deglaciation was controlled by a combination of warming-induced decreasing O2sat and increasing AOU driven by a reduced ventilation of tropical subsurface waters. This article is part of the themed issue 'Ocean ventilation and deoxygenation in a warming world'.

Coupling of Waves, Turbulence and Thermodynamics Across the Marginal Ice Zone

DTIC Science & Technology

2015-09-30

1 DISTRIBUTION STATEMENT A. Approved for public release; distribution is unlimited. Coupling of Waves, Turbulence and Thermodynamics across...developing Thermodynamically Forced Marginal Ice Zone. Submitted to JGR. Heiles,A. S., NPS thesis, Sep. 2014 Schmidt, B. K., NPS thesis March 2012 Shaw

Natural History Study of Monoclonal B Cell Lymphocytosis (MBL), Chronic Lymphocytic Leukemia/Small Lymphocytic Lymphoma (CLL/SLL), Lymphoplasmacytic Lymphoma (LPL)/Waldenstrom Macroglobulinemia (WM), and Splenic Marginal Zone Lymphoma (SMZL)

ClinicalTrials.gov

2018-06-27

B-Cell Chronic Lymphocytic Leukemia; Monoclonal B-Cell Lymphocytosis; Lymhoma, Small Lymphocytic; Chronic Lymphocytic Leukemia; Lymphoplasmacytic Lymphoma; Waldenstrom Macroglobulinemia; Splenic Marginal Zone Lymphoma

Ipilimumab and Local Radiation Therapy in Treating Patients With Recurrent Melanoma, Non-Hodgkin Lymphoma, Colon, or Rectal Cancer

ClinicalTrials.gov

2017-01-12

Adult Nasal Type Extranodal NK/T-cell Lymphoma; Anaplastic Large Cell Lymphoma; Angioimmunoblastic T-cell Lymphoma; Cutaneous B-cell Non-Hodgkin Lymphoma; Extranodal Marginal Zone B-cell Lymphoma of Mucosa-associated Lymphoid Tissue; Hepatosplenic T-cell Lymphoma; Intraocular Lymphoma; Nodal Marginal Zone B-cell Lymphoma; Peripheral T-cell Lymphoma; Recurrent Adult Burkitt Lymphoma; Recurrent Adult Diffuse Large Cell Lymphoma; Recurrent Adult Diffuse Mixed Cell Lymphoma; Recurrent Adult Diffuse Small Cleaved Cell Lymphoma; Recurrent Adult Grade III Lymphomatoid Granulomatosis; Recurrent Adult Immunoblastic Large Cell Lymphoma; Recurrent Adult Lymphoblastic Lymphoma; Recurrent Adult T-cell Leukemia/Lymphoma; Recurrent Colon Cancer; Recurrent Cutaneous T-cell Non-Hodgkin Lymphoma; Recurrent Grade 1 Follicular Lymphoma; Recurrent Grade 2 Follicular Lymphoma; Recurrent Grade 3 Follicular Lymphoma; Recurrent Mantle Cell Lymphoma; Recurrent Marginal Zone Lymphoma; Recurrent Melanoma; Recurrent Mycosis Fungoides/Sezary Syndrome; Recurrent Rectal Cancer; Recurrent Small Lymphocytic Lymphoma; Refractory Hairy Cell Leukemia; Small Intestine Lymphoma; Splenic Marginal Zone Lymphoma; T-cell Large Granular Lymphocyte Leukemia; Testicular Lymphoma; Waldenström Macroglobulinemia

Monoclonal Antibody Therapy Before Stem Cell Transplant in Treating Patients With Relapsed or Refractory Lymphoid Malignancies

ClinicalTrials.gov

2017-10-10

Adult Nasal Type Extranodal NK/T-cell Lymphoma; Anaplastic Large Cell Lymphoma; Angioimmunoblastic T-cell Lymphoma; Cutaneous B-cell Non-Hodgkin Lymphoma; Extranodal Marginal Zone B-cell Lymphoma of Mucosa-associated Lymphoid Tissue; Hepatosplenic T-cell Lymphoma; Intraocular Lymphoma; Nodal Marginal Zone B-cell Lymphoma; Noncutaneous Extranodal Lymphoma; Peripheral T-cell Lymphoma; Recurrent Adult Burkitt Lymphoma; Recurrent Adult Diffuse Large Cell Lymphoma; Recurrent Adult Diffuse Mixed Cell Lymphoma; Recurrent Adult Diffuse Small Cleaved Cell Lymphoma; Recurrent Adult Grade III Lymphomatoid Granulomatosis; Recurrent Adult Hodgkin Lymphoma; Recurrent Adult Immunoblastic Large Cell Lymphoma; Recurrent Adult Lymphoblastic Lymphoma; Recurrent Adult T-cell Leukemia/Lymphoma; Recurrent Cutaneous T-cell Non-Hodgkin Lymphoma; Recurrent Grade 1 Follicular Lymphoma; Recurrent Grade 2 Follicular Lymphoma; Recurrent Grade 3 Follicular Lymphoma; Recurrent Mantle Cell Lymphoma; Recurrent Marginal Zone Lymphoma; Recurrent Mycosis Fungoides/Sezary Syndrome; Recurrent Small Lymphocytic Lymphoma; Refractory Hairy Cell Leukemia; Small Intestine Lymphoma; Splenic Marginal Zone Lymphoma; T-cell Large Granular Lymphocyte Leukemia; Testicular Lymphoma; Waldenström Macroglobulinemia

Bendamustine Hydrochloride, Etoposide, Dexamethasone, and Filgrastim For Peripheral Blood Stem Cell Mobilization in Treating Patients With Refractory or Recurrent Lymphoma or Multiple Myeloma

ClinicalTrials.gov

2017-04-14

Adult Nasal Type Extranodal NK/T-cell Lymphoma; Anaplastic Large Cell Lymphoma; Angioimmunoblastic T-cell Lymphoma; Cutaneous B-cell Non-Hodgkin Lymphoma; Extranodal Marginal Zone B-cell Lymphoma of Mucosa-associated Lymphoid Tissue; Intraocular Lymphoma; Nodal Marginal Zone B-cell Lymphoma; Peripheral T-cell Lymphoma; Recurrent Adult Burkitt Lymphoma; Recurrent Adult Diffuse Large Cell Lymphoma; Recurrent Adult Diffuse Mixed Cell Lymphoma; Recurrent Adult Diffuse Small Cleaved Cell Lymphoma; Recurrent Adult Grade III Lymphomatoid Granulomatosis; Recurrent Adult Hodgkin Lymphoma; Recurrent Adult Immunoblastic Large Cell Lymphoma; Recurrent Adult Lymphoblastic Lymphoma; Recurrent Adult T-cell Leukemia/Lymphoma; Recurrent Cutaneous T-cell Non-Hodgkin Lymphoma; Recurrent Grade 1 Follicular Lymphoma; Recurrent Grade 2 Follicular Lymphoma; Recurrent Grade 3 Follicular Lymphoma; Recurrent Mantle Cell Lymphoma; Recurrent Marginal Zone Lymphoma; Recurrent Mycosis Fungoides/Sezary Syndrome; Recurrent Small Lymphocytic Lymphoma; Refractory Multiple Myeloma; Small Intestine Lymphoma; Splenic Marginal Zone Lymphoma; Waldenström Macroglobulinemia

Methoxyamine and Fludarabine Phosphate in Treating Patients With Relapsed or Refractory Hematologic Malignancies

ClinicalTrials.gov

2015-08-12

Adult Nasal Type Extranodal NK/T-cell Lymphoma; Anaplastic Large Cell Lymphoma; Angioimmunoblastic T-cell Lymphoma; Cutaneous B-cell Non-Hodgkin Lymphoma; Extranodal Marginal Zone B-cell Lymphoma of Mucosa-associated Lymphoid Tissue; Hepatosplenic T-cell Lymphoma; Intraocular Lymphoma; Nodal Marginal Zone B-cell Lymphoma; Peripheral T-cell Lymphoma; Recurrent Adult Burkitt Lymphoma; Recurrent Adult Diffuse Large Cell Lymphoma; Recurrent Adult Diffuse Mixed Cell Lymphoma; Recurrent Adult Diffuse Small Cleaved Cell Lymphoma; Recurrent Adult Grade III Lymphomatoid Granulomatosis; Recurrent Adult Hodgkin Lymphoma; Recurrent Adult Immunoblastic Large Cell Lymphoma; Recurrent Adult Lymphoblastic Lymphoma; Recurrent Adult T-cell Leukemia/Lymphoma; Recurrent Cutaneous T-cell Non-Hodgkin Lymphoma; Recurrent Grade 1 Follicular Lymphoma; Recurrent Grade 2 Follicular Lymphoma; Recurrent Grade 3 Follicular Lymphoma; Recurrent Mantle Cell Lymphoma; Recurrent Marginal Zone Lymphoma; Recurrent Mycosis Fungoides/Sezary Syndrome; Recurrent Small Lymphocytic Lymphoma; Refractory Chronic Lymphocytic Leukemia; Refractory Multiple Myeloma; Relapsing Chronic Myelogenous Leukemia; Small Intestine Lymphoma; Splenic Marginal Zone Lymphoma; Stage III Chronic Lymphocytic Leukemia; Testicular Lymphoma; Waldenström Macroglobulinemia

Geodynamic models of the Wilson Cycle: From rifts to mountains to rifts

NASA Astrophysics Data System (ADS)

Buiter, Susanne; Tetreault, Joya; Torsvik, Trond

2015-04-01

The Wilson Cycle theory that oceans close and reopen along the former suture is a fundamental concept in plate tectonics. The theory suggests that subduction initiates at a passive margin, closing the ocean, and that future continental extension localises at the ensuing collision zone. Each stage of the Wilson Cycle will therefore be characterised by inherited structural and thermal heterogeneities. Here we investigate the role of Wilson Cycle inheritance by considering the influence of (1) passive margin structure on continental collision and (2) collision zones on passive margin formation. Passive margins may be preferred locations for subduction initiation because inherited faults and areas of exhumed serpentinized mantle may weaken a margin enough to localise shortening. If subduction initiates at a passive margin, the shape and structure of the passive margins will affect future continental collision. Our review of present-day passive margins along the Atlantic and Indian Oceans reveals that most passive margins are located on former collision zones. Continental break-up occurs on relatively young sutures, such as Morocco-Nova Scotia, and on very old sutures, such as the Greenland-Labrador and East Antarctica-Australia systems. This implies that it is not always post-collisional collapse that initiates the extensional phase of a Wilson Cycle. We highlight the impact of collision zone inheritance on continental extension and rifted margin architecture. We show numerical experiments of one Wilson Cycle of subduction, collision, and extension. Subduction initiates at a tapered passive margin. Closure of a 60 Ma ocean leads to continental collision and slab break-off, followed by some tens of kilometres of slab eduction. Mantle flow above the sinking detached slab enhances deformation in the rift area. The resulting rift exposes not only continental crust, but also subduction-related sediments and oceanic crust remnants. Renewed subduction in the post-collision phase is enabled by lithosphere delamination and slab rollback, leading to back-arc extension in a style similar to the Tyrrhenian Sea.

Bounds on strain in large Tertiary shear zones of SE Asia from boudinage restoration

NASA Astrophysics Data System (ADS)

Lacassin, R.; Leloup, P. H.; Tapponnier, P.

1993-06-01

We have used surface-balanced restoration of stretched, boudinaged layers to estimate minimum amounts of finite strain in the mylonitic gneisses of the Oligo-Miocene Red River-Ailao Shan shear zone (Yunnan, China) and of the Wang Chao shear zone (Thailand). The layer-parallel extension values thus obtained range between 250 and 870%. We discuss how to use such extension values to place bounds on amounts of finite shear strain in these large crustal shear zones. Assuming simple shear, these values imply minimum total and late shear strains of, respectively, 33 ± 6 and 7 ± 3 at several sites along the Red River-Ailao Shan shear zone. For the Wang Chao shear zone a minimum shear strain of 7 ± 4 is deduced. Assuming homogeneous shear would imply that minimum strike-slip displacements along these two left-lateral shear zones, which have been interpreted to result from the India-Asia collision, have been of the order of 330 ± 60 km (Red River-Ailao Shan) and 35 ± 20 km (Wang Chao).

Agro-climatic zoning of Jatropha curcas as a subside for crop planning and implementation in Brazil.

PubMed

Yamada, Eliane S M; Sentelhas, Paulo C

2014-11-01

As jatropha (Jatropha curcas L.) is a recent crop in Brazil, the studies for defining its suitability for different regions are not yet available, even considering the promises about this plant as of high potential for marginal zones where poor soils and dry climate occur. Based on that, the present study had as objective to characterize the climatic conditions of jatropha's center of origin in Central America for establishing its climatic requirements and to develop the agro-climatic zoning for this crop for some Brazilian regions where, according to the literature, it would be suitable. For classifying the climatic conditions of the jatropha's center of origin, climate data from 123 weather stations located in Mexico (93) and in Guatemala (30) were used. These data were input for Thornthwaite and Mather's climatological water balance for determining the annual water deficiency (WD) and water surplus (WS) of each location, considering a soil water-holding capacity (SWHC) of 100 mm. Mean annual temperature (T m), WD, and WS data were organized in histograms for defining the limits of suitability for jatropha cultivation. The results showed that the suitable range of T m for jatropha cultivation is between 23 and 27 °C. T m between 15 and 22.9 °C and between 27.1 and 28 °C were classified as marginal by thermal deficiency and excess, respectively. T m below 15 °C and above 28 °C were considered as unsuitable for jatropha cultivation, respectively, by risk of frosts and physiological disturbs. For WD, suitability for rain-fed jatropha cultivation was considered when its value is below 360 mm, while between 361 and 720 mm is considered as marginal and over 720 mm unsuitable. The same order of suitability was also defined for WS, with the following limits: suitable for WS up to 1,200 mm; marginal for WS between 1,201 and 2,400 mm, and unsuitable for WS above 2,400 mm. For the crop zoning, the criteria previously defined were applied to 1,814 climate stations in the following Brazilian regions: Northeast (NE) region and the states of Goiás (GO), Tocantins (TO), and Minas Gerais (MG). The suitability maps were generated by crossing the crop climate requirements with the interpolated climate conditions of the selected regions. The maps showed that only 22.65% of the areas in the NE region are suitable for jatropha as a rain-fed crop. The other areas of the region are classified as marginal (62.61%) and unsuitable (14.74%). In the states of GO and TO, the majority of the areas (47.78%) is classified as suitable, and in the state of MG, 33.92% of the territory has suitability for the crop. These results prove that jatropha cannot be cultivated everywhere and will require, as any other crop, minimum climatic conditions to have sustainable performance and high yields.

Oxygen production by molten alkali metal salts using multiple absorption-desorption cycles

DOEpatents

Cassano, Anthony A.

1985-01-01

A continuous chemical air separation is performed wherein oxygen is recovered with a molten alkali metal salt oxygen acceptor in a series of absorption zones which are connected to a plurality of desorption zones operated in separate parallel cycles with the absorption zones. A greater recovery of high pressure oxygen is achieved at reduced power requirements and capital costs.

Characteristics of produced water discharged to the Gulf of Mexico hypoxiczone.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Veil, J. A.; Kimmell, T. A.; Rechner, A. C.

2005-08-24

Each summer, an area of low dissolved oxygen (the hypoxic zone) forms in the shallow nearshore Gulf of Mexico waters from the Mississippi River Delta westward to near the Texas/Louisiana border. Most scientists believe that the leading contributor to the hypoxic zone is input of nutrients (primarily nitrogen and phosphorus compounds) from the Mississippi and Atchafalaya Rivers. The nutrients stimulate growth of phytoplankton. As the phytoplankton subsequently die, they fall to the bottom waters where they are decomposed by microorganisms. The decomposition process consumes oxygen in the bottom waters to create hypoxic conditions. Sources other than the two rivers mentionedmore » above may also contribute significant quantities of oxygen-demanding pollutants. One very visible potential source is the hundreds of offshore oil and gas platforms located within or near the hypoxic zone. Many of these platforms discharge varying volumes of produced water. However, only limited data characterizing oxygen demand and nutrient concentration and loading from offshore produced water discharges have been collected. No comprehensive and coordinated oxygen demand data exist for produced water discharges in the Gulf of Mexico. This report describes the results of a program to sample 50 offshore oil and gas platforms located within the Gulf of Mexico hypoxic zone. The program was conducted in response to a requirement in the U.S. Environmental Protection Agency (EPA) general National Pollutant Discharge Elimination System (NPDES) permit for offshore oil and gas discharges. EPA requested information on the amount of oxygen-demanding substances contained in the produced water discharges. This information is needed as inputs to several water quality models that EPA intends to run to estimate the relative contributions of the produced water discharges to the occurrence of the hypoxic zone. Sixteen platforms were sampled 3 times each at approximately one-month intervals to give an estimate of temporal variability. An additional 34 platforms were sampled one time. The 50 sampled platforms were scattered throughout the hypoxic zone to give an estimate of spatial variability. Each platform was sampled for biochemical oxygen demand (BOD), total organic carbon (TOC), nitrogen (ammonia, nitrate, nitrite, and total Kjeldahl nitrogen [TKN]), and phosphorus (total phosphorus and orthophosphate). In addition to these parameters, each sample was monitored for pH, conductivity, salinity, and temperature. The sampling provided average platform concentrations for each parameter. Table ES-1 shows the mean, median, maximum, and minimum for the sampled parameters. For some of the parameters, the mean is considerably larger than the median, suggesting that one or a few data points are much higher than the rest of the points (outliers). Chapter 4 contains an extensive discussion of outliers and shows how the sample results change if outliers are deleted from consideration. A primary goal of this study is to estimate the mass loading (lb/day) of each of the oxygen-demanding pollutants from the 50 platforms sampled in the study. Loading is calculated by multiplying concentrations by the discharge volume and then by a conversion factor to allow units to match. The loadings calculated in this study of 50 platforms represent a produced water discharge volume of about 176,000 bbl/day. The total amount of produced water generated in the hypoxic zone during the year 2003 was estimated as 508,000 bbl/day. This volume is based on reports by operators to the Minerals Management Service each year. It reflects the volume of produced water that is generated from each lease, not the volume that is discharged from each platform. The mass loadings from offshore oil and gas discharges to the entire hypoxic zone were estimated by multiplying the 50-platform loadings by the ratio of total water generated to 50-platform discharge volume. The loadings estimated for the 50 platforms and for the entire hypoxic zone are shown in Table ES-2. These estimates and the sampling data from 50 platforms represent the most complete and comprehensive effort ever undertaken to characterize the amount and potential sources of the oxygen demand in offshore oil and gas produced water discharges.« less

Application value of different transformation zone types and its genetic relationship with high-risk HPV type in diagnosis and therapy of cervical disease.

PubMed

Chen, Yan; Zhou, Jia-De

2015-01-01

This study aims to discuss the influence of different types of transformation zone (TZ) on positive surgical margin of loop electrosurgical excision procedure (LEEP) and the significance of infection of different genetic high-risk HPV for cervical intraepithelial neoplasm. The clinical data of patients who had CIN2+ and received LEEP during January to December 2013 was investigated. The conditions of positive surgical margin of patients of different transformation zone (type I, II, III) were analyzed. The clinical high-risk types of HPV were divided into three groups, including A5/6, A7 and A9, compared with the pathological conditions of pre-operation and post-operation of the patients in respective group. The results indicated that type III transformation zone is more likely to cause positive cutting margin. For CIN2+ patients, sensitivity and specificity are 0.89% and 79.56% in group A5/6, and negative and positive predicted value (NPV, PPV) are 40% and 5%. The sensitivity, specificity, NPV, PPV in group A7 is 12.5%, 44.08%, 29.49% and 21.21%, respectively. The sensitivity, specificity, NPV, PPV in group A9 is 88.99%, 87.09%, 85.26%, 81.51%, respectively. Transformation zone type was correlated positively with positive cutting margin percentage (r = 0.8732, P < 0.05). Compared with type I, type II and III transformation zone is more likely to cause pathological upgrades. In conclusion, different types of transformation zone and high-risk HPV have clinical significance in causing positive cutting margin of surgery and disease extent.

Lenalidomide And Rituximab as Maintenance Therapy in Treating Patients With B-Cell Non-Hodgkin Lymphoma

ClinicalTrials.gov

2015-11-25

Adult Non-Hodgkin Lymphoma; Adult Grade III Lymphomatoid Granulomatosis; Contiguous Stage II Adult Burkitt Lymphoma; Contiguous Stage II Adult Diffuse Large Cell Lymphoma; Contiguous Stage II Adult Diffuse Mixed Cell Lymphoma; Contiguous Stage II Adult Diffuse Small Cleaved Cell Lymphoma; Contiguous Stage II Adult Immunoblastic Large Cell Lymphoma; Contiguous Stage II Adult Lymphoblastic Lymphoma; Contiguous Stage II Grade 1 Follicular Lymphoma; Contiguous Stage II Grade 2 Follicular Lymphoma; Contiguous Stage II Grade 3 Follicular Lymphoma; Contiguous Stage II Mantle Cell Lymphoma; Contiguous Stage II Marginal Zone Lymphoma; Contiguous Stage II Small Lymphocytic Lymphoma; Cutaneous B-cell Non-Hodgkin Lymphoma; Extranodal Marginal Zone B-cell Lymphoma of Mucosa-associated Lymphoid Tissue; Nodal Marginal Zone B-cell Lymphoma; Noncontiguous Stage II Adult Burkitt Lymphoma; Noncontiguous Stage II Adult Diffuse Large Cell Lymphoma; Noncontiguous Stage II Adult Diffuse Mixed Cell Lymphoma; Noncontiguous Stage II Adult Diffuse Small Cleaved Cell Lymphoma; Noncontiguous Stage II Adult Immunoblastic Large Cell Lymphoma; Noncontiguous Stage II Adult Lymphoblastic Lymphoma; Noncontiguous Stage II Grade 1 Follicular Lymphoma; Noncontiguous Stage II Grade 2 Follicular Lymphoma; Noncontiguous Stage II Grade 3 Follicular Lymphoma; Noncontiguous Stage II Mantle Cell Lymphoma; Noncontiguous Stage II Marginal Zone Lymphoma; Noncontiguous Stage II Small Lymphocytic Lymphoma; Recurrent Adult Burkitt Lymphoma; Recurrent Adult Diffuse Large Cell Lymphoma; Recurrent Adult Diffuse Mixed Cell Lymphoma; Recurrent Adult Diffuse Small Cleaved Cell Lymphoma; Recurrent Adult Grade III Lymphomatoid Granulomatosis; Recurrent Adult Immunoblastic Large Cell Lymphoma; Recurrent Adult Lymphoblastic Lymphoma; Recurrent Grade 1 Follicular Lymphoma; Recurrent Grade 2 Follicular Lymphoma; Recurrent Grade 3 Follicular Lymphoma; Recurrent Mantle Cell Lymphoma; Recurrent Marginal Zone Lymphoma; Recurrent Small Lymphocytic Lymphoma; Splenic Marginal Zone Lymphoma; Stage I Adult Burkitt Lymphoma; Stage I Adult Diffuse Large Cell Lymphoma; Stage I Adult Diffuse Mixed Cell Lymphoma; Stage I Adult Diffuse Small Cleaved Cell Lymphoma; Stage I Adult Immunoblastic Large Cell Lymphoma; Stage I Adult Lymphoblastic Lymphoma; Stage I Grade 1 Follicular Lymphoma; Stage I Grade 2 Follicular Lymphoma; Stage I Grade 3 Follicular Lymphoma; Stage I Mantle Cell Lymphoma; Stage I Marginal Zone Lymphoma; Stage I Small Lymphocytic Lymphoma; Stage III Adult Burkitt Lymphoma; Stage III Adult Diffuse Large Cell Lymphoma; Stage III Adult Diffuse Mixed Cell Lymphoma; Stage III Adult Diffuse Small Cleaved Cell Lymphoma; Stage III Adult Immunoblastic Large Cell Lymphoma; Stage III Adult Lymphoblastic Lymphoma; Stage III Grade 1 Follicular Lymphoma; Stage III Grade 2 Follicular Lymphoma; Stage III Grade 3 Follicular Lymphoma; Stage III Mantle Cell Lymphoma; Stage III Marginal Zone Lymphoma; Stage III Small Lymphocytic Lymphoma; Stage IV Adult Burkitt Lymphoma; Stage IV Adult Diffuse Large Cell Lymphoma; Stage IV Adult Diffuse Mixed Cell Lymphoma; Stage IV Adult Diffuse Small Cleaved Cell Lymphoma; Stage IV Adult Immunoblastic Large Cell Lymphoma; Stage IV Adult Lymphoblastic Lymphoma; Stage IV Grade 1 Follicular Lymphoma; Stage IV Grade 2 Follicular Lymphoma; Stage IV Grade 3 Follicular Lymphoma; Stage IV Mantle Cell Lymphoma; Stage IV Marginal Zone Lymphoma; Stage IV Small Lymphocytic Lymphoma; Waldenstrom Macroglobulinemia

Advancing Understanding of Earthquakes by Drilling an Eroding Convergent Margin

NASA Astrophysics Data System (ADS)

von Huene, R.; Vannucchi, P.; Ranero, C. R.

2010-12-01

A program of IODP with great societal relevance is sampling and instrumenting the seismogenic zone. The zone generates great earthquakes that trigger tsunamis, and submarine slides thereby endangering coastal communities containing over sixty percent of the earth’s population. To asses and mitigate this endangerment it is urgent to advance understanding of fault dynamics that allows more timely anticipation of hazardous seismicity. Seismogenesis on accreting and eroding convergent plate boundaries apparently differ because of dissimilar materials along the interplate fault. As the history of instrumentally recorded earthquakes expands the difference becomes clearer. The more homogeneous clay, silt and sand subducted at accreting margins is associated with great earthquakes (M 9) whereas the fragmented upper plate rock that can dominate subducted material along an eroding margin plate interface is associated with many tsunamigenic earthquakes (Bilek, 2010). Few areas have been identified where the seismogenic zone can be reached with scientific drilling. In IODP accreting margins are studied on the NanTroSeize drill transect off Japan where the ultimate drilling of the seismogenic interface may occur by the end of IODP. The eroding Costa Rica margin will be studied in CRISP where a drill program will begin in 2011. The Costa Rican geophysical site survey will be complete with acquisition and processing of 3D seismic data in 2011 but the entire drilling will not be accomplished in IODP. It is appropriate that the accreting margin study be accomplished soon considering the indications of a pending great earthquake that will affect a country that has devoted enormous resources to IODP. However, understanding the erosional end-member is scientifically as important to an understanding of fault mechanics. Transoceanic tsunamis affect the entire Pacific rim where most subduction zones are eroding margins. The Costa Rican subduction zone is less complex operationally and perhaps geologically than the Nankai margin. The developing Central American countries do not have the resources to contribute to IODP but this should not deter acquiring the scientific insights proposed in CRISP considering the broader scientific benefits. Such benefits include the first sampling and instrumentation of an actively eroding plate interface and drilling near or into an earthquake asperity. Drilling an eroding margin should significantly advance understanding of subduction zone fault mechanisms and help improve assessment of future hazardous earthquakes and tsunamis.

Oxy-fired boiler unit and method of operating the same

DOEpatents

Lou, Xinsheng; Zhang, Jundong; Joshi, Abhinaya; McCombe, James A.; Levasseur, Armand A.

2016-12-06

An oxy-combustion boiler unit is disclosed which includes a furnace for combusting fuel and for emitting flue gas resulting from combustion. The furnace has first, second and third combustion zones, and an air separation unit for separating oxygen gas from air and providing a first portion of the separated oxygen to a first oxidant flow, a second portion to a second oxidant flow, and a third portion of the separated oxygen gas to the first, second, and third zones of the furnace. A controller can cause the separated oxygen gas to be distributed so that the first and second oxygen flows have a desired oxygen content, and so that the first, second, and third zones of the furnace receive a desired amount of oxygen based on a combustion zone stoichiometry control.

Influence of oxygen availability on the activities of ammonia-oxidizing archaea.

PubMed

Qin, Wei; Meinhardt, Kelley A; Moffett, James W; Devol, Allan H; Virginia Armbrust, E; Ingalls, Anitra E; Stahl, David A

2017-06-01

Recent studies point to the importance of oxygen (O 2 ) in controlling the distribution and activity of marine ammonia-oxidizing archaea (AOA), one of the most abundant prokaryotes in the ocean. The AOA are associated with regions of low O 2 tension in oceanic oxygen minimum zones (OMZs), and O 2 availability is suggested to influence their production of the ozone-depleting greenhouse gas nitrous oxide (N 2 O). We show that marine AOA available in pure culture sustain high ammonia oxidation activity at low μM O 2 concentrations, characteristic of suboxic regions of OMZs (<10 µM O 2 ), and that atmospheric concentrations of O 2 may inhibit the growth of some environmental populations. We quantify the increasing N 2 O production by marine AOA with decreasing O 2 tensions, consistent with the plausibility of an AOA contribution to the accumulation of N 2 O at the oxic-anoxic redox boundaries of OMZs. Variable sensitivity to peroxide also suggests that endogenous or exogenous reactive oxygen species are of importance in determining the environmental distribution of some populations. © 2017 Society for Applied Microbiology and John Wiley & Sons Ltd.

Gas hydrates (clathrates) causing pore-water freshening and oxygen isotope fractionation in deep-water sedimentary sections of terrigenous continental margins

USGS Publications Warehouse

Hesse, R.; Harrison, W.E.

1981-01-01

The occurrence of gas hydrates in deep-water sections of the continental margins predicted from anomalous acoustic reflectors on seismic profiles has been confirmed by recent deep-sea drilling results. On the Pacific continental slope off Guatemala gas hydrates were brought up for the first time from two holes (497, 498A) drilled during Leg 67 of the DSDP in water depths of 2360 and 5500 m, respectively. The hydrates occur in organic matter-rich Pleistocene to Miocene terrigenous sediments. In the hydrate-bearing zone a marked decrease in interstitial water chlorinities was observed starting at about 10-20 m subbottom depth. Pore waters at the bottom of the holes (near 400 m subbottom) have as little as half the chlorinity of seawater (i.e. 9???). Similar, but less pronounced, trends were observed during previous legs of the DSDP in other hydrate-prone segments of the continental margins where recharge of fresh water from the continent can be excluded (e.g. Leg 11). The crystallization of hydrates, like ice, excludes salt ions from the crystal structure. During burial the dissolved salts are separated from the solids. Subsidence results in a downward motion of the solids (including hydrates) relative to the pore fluids. Thawing of hydrates during recovery releases fresh water which is remixed with the pore fluid not involved in hydrate formation. The volume of the latter decreases downhole thus causing downward decreasing salinity (chlorinity). Hydrate formation is responsible for oxygen isotope fractionation with 18O-enrichment in the hydrate explaining increasingly more positive ??18O values in the pore fluids recovered (after hydrate dissociation) with depth. ?? 1981.

Waves and mesoscale features in the marginal ice zone

NASA Technical Reports Server (NTRS)

Liu, Antony K.; Peng, Chih Y.

1993-01-01

Ocean-ice interaction processes in the Marginal Ice Zone (MIZ) by waves and mesoscale features, such as upwelling and eddies, are studied using ERS-1 Synthetic Aperture Radar (SAR) imagery and wave-ice interaction models. Satellite observations of mesoscale features can play a crucial role in ocean-ice interaction study.

Dissolved oxygen as a constraint on daytime deep scattering layer depth in the southern California current ecosystem

NASA Astrophysics Data System (ADS)

Netburn, Amanda N.; Anthony Koslow, J.

2015-10-01

Climate change-induced ocean deoxygenation is expected to exacerbate hypoxic conditions in mesopelagic waters off the coast of southern California, with potentially deleterious effects for the resident fauna. In order to understand the possible impacts that the oxygen minimum zone expansion will have on these animals, we investigated the response of the depth of the deep scattering layer (i.e., upper and lower boundaries) to natural variations in midwater oxygen concentrations, light levels, and temperature over time and space in the southern California Current Ecosystem. We found that the depth of the lower boundary of the deep scattering layer (DSL) is most strongly correlated with dissolved oxygen concentration, and irradiance and oxygen concentration are the key variables determining the upper boundary. Based on our correlations and published estimates of annual rates of change to irradiance level and hypoxic boundary, we estimated the corresponding annual rate of change of DSL depths. If past trends continue, the upper boundary is expected to shoal at a faster rate than the lower boundary, effectively widening the DSL under climate change scenarios. These results have important implications for the future of pelagic ecosystems, as a change to the distribution of mesopelagic animals could affect pelagic food webs as well as biogeochemical cycles.

Placing an upper limit on cryptic marine sulphur cycling.

PubMed

Johnston, D T; Gill, B C; Masterson, A; Beirne, E; Casciotti, K L; Knapp, A N; Berelson, W

2014-09-25

A quantitative understanding of sources and sinks of fixed nitrogen in low-oxygen waters is required to explain the role of oxygen-minimum zones (OMZs) in controlling the fixed nitrogen inventory of the global ocean. Apparent imbalances in geochemical nitrogen budgets have spurred numerous studies to measure the contributions of heterotrophic and autotrophic N2-producing metabolisms (denitrification and anaerobic ammonia oxidation, respectively). Recently, 'cryptic' sulphur cycling was proposed as a partial solution to the fundamental biogeochemical problem of closing marine fixed-nitrogen budgets in intensely oxygen-deficient regions. The degree to which the cryptic sulphur cycle can fuel a loss of fixed nitrogen in the modern ocean requires the quantification of sulphur recycling in OMZ settings. Here we provide a new constraint for OMZ sulphate reduction based on isotopic profiles of oxygen ((18)O/(16)O) and sulphur ((33)S/(32)S, (34)S/(32)S) in seawater sulphate through oxygenated open-ocean and OMZ-bearing water columns. When coupled with observations and models of sulphate isotope dynamics and data-constrained model estimates of OMZ water-mass residence time, we find that previous estimates for sulphur-driven remineralization and loss of fixed nitrogen from the oceans are near the upper limit for what is possible given in situ sulphate isotope data.

Wave attenuation in the marginal ice zone during LIMEX

NASA Technical Reports Server (NTRS)

Liu, Antony K.; Peng, Chih Y.; Vachon, Paris W.

1991-01-01

During LIMEX'87 and '89, the CCRS CV-580 aircraft collected SAR (synthetic aperture radar) data over the marginal ice zone off the coast of Newfoundland. Based upon the wavenumber spectra from SAR data, the wave attenuation rate is estimated and compared with a model. The model-data comparisons are reasonably good for the ice conditions during LIMEX (Labrador Ice Margin Experiment). Both model and SAR-derived wave attenuation rates show a roll-over at high wavenumbers.

An eddy-stimulated hotspot for fixed nitrogen-loss from the Peru oxygen minimum zone

NASA Astrophysics Data System (ADS)

Altabet, M. A.; Ryabenko, E.; Stramma, L.; Wallace, D. W. R.; Frank, M.; Grasse, P.; Lavik, G.

2012-07-01

Fixed nitrogen (N) loss to biogenic N2 in intense oceanic O2 minimum zones (OMZ) accounts for a large fraction of the global N sink and is an essential control on the ocean's N budget. However, major uncertainties exist regarding microbial pathways as well as net impact on the magnitude of N-loss and the ocean's overall N budget. Here we report the discovery of a N-loss hotspot in the Peru OMZ associated with a coastally trapped mesoscale eddy that is marked by an extreme N deficit matched by biogenic N2 production, high NO2- levels, and the highest isotope enrichments observed so far in OMZ's for the residual NO3-. High sea surface chlorophyll (SSC) in seaward flowing streamers provides evidence for offshore eddy transport of highly productive, inshore water. Resulting pulses in the downward flux of particles likely stimulated heterotrophic dissimilatory NO3- reduction and subsequent production of biogenic N2. The associated temporal/spatial heterogeneity of N-loss, mediated by a local succession of microbial processes, may explain inconsistencies observed among prior studies. Similar transient enhancements of N-loss likely occur within all other major OMZ's exerting a major influence on global ocean N and N isotope budgets.

[Distribution characteristics of dissolved oxygen and mechanism of hypoxia in the upper estuarine zone of the Daliaohe River].

PubMed

Yang, Li-Na; Li, Zheng-Yan; Zhang, Xue-Qing

2011-01-01

Based on field surveys in the upper estuarine zone of the Daliaohe River in Spring and Summer of 2009, the spatial and temporal distributions of dissolved oxygen were analyzed and the mechanism of hypoxia were preliminarily discussed. The results indicated that DO concentrations were higher in the river mouth and lower in the upper reaches, higher in surface layers and lower in bottom concerning its spatial distribution. For its temporal distribution, DO concentrations were higher in daytime and lower at night, higher in Spring and lower in Summer. The DO concentrations in the upper estuarine zone of the Daliaohe River in Summer ranged between 1.36-4.77 mg/L with an average of 3.44 mg/L. The concentrations in the lower reaches were higher with an average of 3.94 mg/L. A large hypoxia area was recorded in Summer in the upper reaches of the estuary starting from about 45 km away from the river gate with an average DO concentration of 2.33 mg/L and a minimum of 1.36 mg/L. The correlation analysis showed that DO concentration was significantly correlated with nutrients and permanganate index. Excessive discharge of nutrients and organic pollutants were, therefore, main factors causing hypoxia, and water column stratification due to temperature rise in Summer in surface layers led to further reduction of DO in bottom layers of the water.

Effect of blood viscosity on oxygen transport in residual stenosed artery following angioplasty.

PubMed

Kwon, Ohwon; Krishnamoorthy, Mahesh; Cho, Young I; Sankovic, John M; Banerjee, Rupak K

2008-02-01

The effect of blood viscosity on oxygen transport in a stenosed coronary artery during the postangioplasty scenario is studied. In addition to incorporating varying blood viscosity using different hematocrit (Hct) concentrations, oxygen consumption by the avascular wall and its supply from vasa vasorum, nonlinear oxygen binding capacity of the hemoglobin, and basal to hyperemic flow rate changes are included in the calculation of oxygen transport in both the lumen and the avascular wall. The results of this study show that oxygen transport in the postangioplasty residual stenosed artery is affected by non-Newtonian shear-thinning property of the blood viscosity having variable Hct concentration. As Hct increases from 25% to 65%, the diminished recirculation zone for the increased Hct causes the commencement of pO(2) decrease to shift radially outward by approximately 20% from the center of the artery for the basal flow, but by approximately 10% for the hyperemic flow at the end of the diverging section. Oxygen concentration increases from a minimum value at the core of the recirculation zone to over 90 mm Hg before the lumen-wall interface at the diverging section for the hyperemic flow, which is attributed to increased shear rate and thinner lumen boundary layer for the hyperemic flow, and below 90 mm Hg for the basal flow. As Hct increases from 25% to 65%, the average of pO(2,min) beyond the diverging section drops by approximately 25% for the basal flow, whereas it increases by approximately 15% for the hyperemic flow. Thus, current results with the moderate stenosed artery indicate that reducing Hct might be favorable in terms of increasing O(2) flux and pO(2,min), in the medial region of the wall for the basal flow, while higher Hct is advantageous for the hyperemic flow beyond the diverging section. The results of this study not only provide significant details of oxygen transport under varying pathophysiologic blood conditions such as unusually high blood viscosity and flow rate, but might also be extended to offer implications for drug therapy related to blood-thinning medication and for blood transfusion and hemorrhage.

Variability of dissolved oxygen over the last millennium and the 21st century in CESM

NASA Astrophysics Data System (ADS)

Hameau, Angélique; Joos, Fortunat; Mignot, Juliette; Keller, Kathrin

2017-04-01

The earth system models simulate a depletion of the oxygen content in the ocean under global warming conditions (Cocco et al. 2012, Frölicher et al. 2009). The response to external forcing and mechanism underlying this evolution are not completely understood. Physical and biogeochemical processes are involved and tangled up to each other leading to a decrease of the global mean concentration of O2 in the ocean with the increase of the ocean temperature. This result is supported by experimental and observational studies in Atlantic and Pacific oceans (Stramma et al. 2008, Brandt et al. 2010). Here, we study the evolution of dissolved oxygen in a climate simulation of the Community Earth System Model (CESM) covering the last millennium and the 21st century. This long period allows us to identify the natural variability of the climate in this system, and therefore analyse the time of emergence (ToE) of the anthropogenic signal under the RCP8.5 scenario. Based on Keller et al. 2014, the time of emergence is defined as the point in time when the trend signal reaches twice the standard deviation of the signal during the preindustrial period (1000 years). The ToE of oxygen and of temperature present an offset. We show that the anthropogenic emissions are seen in a first hand by the oxygen and only then by the temperature. We also look at the OMZ response. The oxygen minimum zones result from a combination of weak ventilation and sustained respiration by the microorgamisms. With a global decrease of the oceanic oxygen content, the OMZ may therefore expand impacting the environment of marine species. But this statement is questioned by Deutsch et al 2014, who relates the variations of Pacific OMZ to the variations of the tropical Walker circulation. The CESM climate model predicts an expansion of the oxygen low zones and the emergence of new ones over the last century. Magnitude and timescales of these responses will be discussed and compared to natural variability.

Oxygen production by molten alkali metal salts using multiple absorption-desorption cycles

DOEpatents

Cassano, A.A.

1985-07-02

A continuous chemical air separation is performed wherein oxygen is recovered with a molten alkali metal salt oxygen acceptor in a series of absorption zones which are connected to a plurality of desorption zones operated in separate parallel cycles with the absorption zones. A greater recovery of high pressure oxygen is achieved at reduced power requirements and capital costs. 3 figs.

Cytherellid species (Ostracoda) and their significance to the Late Quaternary events in the Santos Basin, Brazil

USGS Publications Warehouse

Bergue, C.T.; Coimbra, J.C.; Cronin, T. M.

2007-01-01

Four autochthonous cytherellid species (Cytherella serratula (BRADY, 1880), C. hermargentina WHATLEY et al. 1998, C. pleistocenica sp. nov. and C. santosensis sp. nov.) have been identified from two offshore cores (44 samples) within the Santos Basin. The distribution of these ostracodes is controlled by local hydrological conditions such as the temperature and, possibly, the oxygen minimum zone (OMZ). However, these factors cannot explain completely the species occurrence in the analysed cores, and relative sea level changes and productivity variation driven by climatic changes are proposed as additional explanations for the faunal distribution pattern. ?? E. Schweizerbart'sche Verlagsbuchhandlung (Na??gele u. Obermiller), 2007.

Oxygen enhanced switching to combustion of lower rank fuels

DOEpatents

Kobayashi, Hisashi; Bool, III, Lawrence E.; Wu, Kuang Tsai

2004-03-02

A furnace that combusts fuel, such as coal, of a given minimum energy content to obtain a stated minimum amount of energy per unit of time is enabled to combust fuel having a lower energy content, while still obtaining at least the stated minimum energy generation rate, by replacing a small amount of the combustion air fed to the furnace by oxygen. The replacement of oxygen for combustion air also provides reduction in the generation of NOx.

Method for converting hydrocarbon fuel into hydrogen gas and carbon dioxide

DOEpatents

Clawson, Lawrence G.; Mitchell, William L.; Bentley, Jeffrey M.; Thijssen, Johannes H. J.

2000-01-01

A method for converting hydrocarbon fuel into hydrogen gas and carbon dioxide within a reformer 10 is disclosed. According to the method, a stream including an oxygen-containing gas is directed adjacent to a first vessel 18 and the oxygen-containing gas is heated. A stream including unburned fuel is introduced into the oxygen-containing gas stream to form a mixture including oxygen-containing gas and fuel. The mixture of oxygen-containing gas and unburned fuel is directed tangentially into a partial oxidation reaction zone 24 within the first vessel 18. The mixture of oxygen-containing gas and fuel is further directed through the partial oxidation reaction zone 24 to produce a heated reformate stream including hydrogen gas and carbon monoxide. Steam may also be mixed with the oxygen-containing gas and fuel, and the reformate stream from the partial oxidation reaction zone 24 directed into a steam reforming zone 26. High- and low-temperature shift reaction zones 64,76 may be employed for further fuel processing.

The Dynamics of Sediment Oxygenation in Marsh Rhizospheres

NASA Astrophysics Data System (ADS)

Koop-Jakobsen, K.

2014-12-01

Many marsh grasses are capable of internal oxygen transport from aboveground sources to belowground roots and rhizomes, where oxygen may leak across the rhizodermis and oxygenate the surrounding sediment. In the field, the extent of sediment oxygenation in marshes was assessed in the rhizosphere of the marsh grass; Spartina anglica, inserting 70 optical fiber oxygen sensors into the rhizosphere. Two locations with S. anglica growing in different sediment types were investigated. No oxygen was detected in the rhizospheres indicating that belowground sediment oxygenation in S. anglica has a limited effect on the bulk anoxic sediment and is restricted to sediment in the immediate vicinity of the roots. In the laboratory, the presence of 1.5mm wide and 16mm long oxic root zones was demonstrated around root tips of S. anglica growing in permeable sandy sediment using planar optodes recording 2D-images of the oxygen distribution. Oxic root zones in S. anglica growing in tidal flat deposits were significantly smaller. The size of oxic roots zones was highly dynamic and affected by tidal inundations as well as light availability. Atmospheric air was the primary oxygen source for belowground sediment oxygenation, whereas photosynthetic oxygen production only played a minor role for the size of the oxic root zones during air-exposure of the aboveground biomass. During tidal inundations (1.5 h) completely submerging the aboveground biomass cutting off access to atmospheric oxygen, the size of oxic root zones were reduced significantly in the light and oxic root zones were completely eliminated in darkness. Sediment oxygenation in the rhizospheres of marsh grasses is of significant importance for marshes ability to retain inorganic nitrogen before it reaches the coastal waters. The presence of oxic roots zones promotes coupled nitrification-denitrification at depth in the sediment, which can account for more than 80% of the total denitrification in marshes.

Slip parameters on major thrusts at a convergent plate boundary: regional heterogeneity of potential slip distance at the shallow portion of the subducting plate

NASA Astrophysics Data System (ADS)

Mukoyoshi, Hideki; Kaneki, Shunya; Hirono, Tetsuro

2018-03-01

Understanding variations of slip distance along major thrust systems at convergent margins is an important issue for evaluation of near-trench slip and the potential generation of large tsunamis. We derived quantitative estimates of slip along ancient subduction fault systems by using the maturity of carbonaceous material (CM) of discrete slip zones as a proxy for temperature. We first obtained the Raman spectra of CM in ultracataclasite and pseudotachylyte layers in discrete slip zones at depths below the seafloor of 1-4 km and 2.5-5.5 km, respectively. By comparing the area-under-the-peak ratios of graphitic and disordered bands in those Raman spectra with spectra of experimentally heated CM from surrounding rocks, we determined that the ultracataclasite and pseudotachylyte layers had been heated to temperatures of up to 700 and 1300 °C, respectively. Numerical simulation of the thermal history of CM extracted from rocks near the two slip zones, taking into consideration these temperature constraints, indicated that slip distances in the ultracataclasite and pseudotachylyte layers were more than 3 and 7 m, respectively. Thus, potential distance of coseismic slip along the subduction-zone fault system could have regional variations even at shallow depth (≤ 5.5 km). The slip distances we determined probably represent minimum slips for subduction-zone thrusts and thus provide an important contribution to earthquake preparedness plans in coastal areas facing the Nankai and Sagami Troughs.

Structural styles of Paleozoic intracratonic fault reactivation: A case study of the Grays Point fault zone in southeastern Missouri, USA

USGS Publications Warehouse

Clendenin, C.W.; Diehl, S.F.

1999-01-01

A pronounced, subparallel set of northeast-striking faults occurs in southeastern Missouri, but little is known about these faults because of poor exposure. The Commerce fault system is the southernmost exposed fault system in this set and has an ancestry related to Reelfoot rift extension. Recent published work indicates that this fault system has a long history of reactivation. The northeast-striking Grays Point fault zone is a segment of the Commerce fault system and is well exposed along the southeast rim of an inactive quarry. Our mapping shows that the Grays Point fault zone also has a complex history of polyphase reactivation, involving three periods of Paleozoic reactivation that occurred in Late Ordovician, Devonian, and post-Mississippian. Each period is characterized by divergent, right-lateral oblique-slip faulting. Petrographic examination of sidwall rip-out clasts in calcite-filled faults associated with the Grays Point fault zone supports a minimum of three periods of right-lateral oblique-slip. The reported observations imply that a genetic link exists between intracratonic fault reactivation and strain produced by Paleozoic orogenies affecting the eastern margin of Laurentia (North America). Interpretation of this link indicate that right-lateral oblique-slip has occurred on all of the northeast-striking faults in southeastern Missouri as a result of strain influenced by the convergence directions of the different Paleozoic orogenies.

Gold deposits and occurrences of the Greater Caucasus, Georgia Republic: Their genesis and prospecting criteria

USGS Publications Warehouse

Kekelia, S.A.; Kekelia, M.A.; Kuloshvili, S.I.; Sadradze, N.G.; Gagnidze, N.E.; Yaroshevich, V.Z.; Asatiani, G.G.; Doebrich, J.L.; Goldfarb, R.J.; Marsh, E.E.

2008-01-01

The south-central part of the Greater Caucasus region, Georgia Republic, represents an extremely prospective region for significant orogenic gold deposits. Gold-bearing quartz veins are concentrated in two extensive WNW-trending belts, the Mestia-Racha and Svaneti districts, within the northern margin of the Southern Slope Zone of the Great Caucasus orogen. This metalliferous region is dominated by Early to Middle Jurassic slates, which are part of a terrane that likely accreted to the continental margin from late Paleozoic to Jurassic. The slates were subsequently intruded by both Middle to Late Jurassic and Neogene granitoids. Quartz veins in the more carbonaceous slate units are most consistently enriched in As, Au, Hg, Sb, and W, and show mineralization styles most consistent with typical orogenic gold deposits. Quartz veins in the Mestia-Racha district were mined in Soviet times for As, Sb, and W, but many of these are now being recognized as gold resource targets. The veins occur in the footwall of a thrust fault between the Southern Slope zone and an earlier accreted terrane, the Main Zone, to the north. Many veins in the district continue along strike for > 1??km and some cut Neogene intrusions, constraining ore formation to the most recent 4 to 5??million years. Gold deposition thus correlates with final collision of the Arabian plate to the south and uplift of the ore-hosting Greater Caucasus. The Zopkhito deposit, previously mined for antimony, contains an estimated 55??t Au at a cutoff grade of 0.5??g/t. The veins are localized in an area where smaller-order structures show a major change in strike from N-S to more E-W trends. A pyrite-arsenopyrite ore stage includes gold concentrated in both sulfide phases; it is overprinted by a later stibnite-dominant stage. Fluid-inclusion studies of ore samples from the Zopkhito deposit indicate minimum trapping temperatures of 300 to 350????C and 200 to 300????C for the two stages, respectively, and minimum trapping pressures of 0.2 to 0.5??kbar. Ore-forming fluids, with approximately 5 to 20??mol% non-aqueous gas, evolved from N2-dominant to CO2-dominant during evolution of the hydrothermal system. ??34S values of + 1 to + 4??? for ore-related sulfides at Zopkhito are consistent with a sedimentary rock source for the sulfur, and ??18O quartz measurements of 16 to 21??? are consistent with either a magmatic or metamorphic fluid. More than 60 gold-bearing lodes and placers in the Svaneti district occur along the thrust between the Southern Slope and Main Zones. Lode gold potential was first recognized in the historic placer district in the 1980s, with many auriferous quartz veins cutting Middle Jurassic igneous rocks. Brecciated veins in the 18??t Au Lukhra deposit cut a small granodioritic to dioritic stock; the latter intrudes Devonian schist immediately north of the thrust. Presently, there are three recognized ore zones in the deposit, with the most significant occurring over an area 140??m in length and 12??m-wide, with typical grades of 7 to 9??g/t Au. Reconnaissance fluid-inclusion studies of ore samples from the Lukhra deposit indicate minimum trapping temperatures of 220????C. Measurements of ??18Oquartz of about 10??? suggest buffering of isotopic composition by the igneous host rocks.

Effects of Variable Oxygen Concentrations on the Sinking Fluxes and Composition of Organic Matter in The Baltic Sea

NASA Astrophysics Data System (ADS)

Cisternas-Novoa, C.; Le Moigne, F. A. C.; Roa, J.; Wagner, H.; Engel, A.

2016-02-01

The downward flux of organic matter (OM) from the euphotic zone is critical to understand the biogeochemistry cycles in the ocean. Local changes in stratification, nutrient inputs, community structure and oxygen concentrations potentially affect the magnitude of OM flux. The Baltic Sea is a unique environment with strong natural gradients of primary productivity, nutrients and O2 concentrations. The genuine effect of oxygen minimum deficiency on the fate of sinking OM and the efficiency of the biologic carbon pump has yet to be clarified. Previous work suggested that under oxygen deficiency, nitrogen rich amino acids are preferentially utilized causing nitrogen loss from the water column (van Mooy et al., 2002, Kalvelage et al 2013). Here, we investigate how different oxygen conditions and surface productivity affect sinking particles flux and particles composition in the central Baltic Sea. Sinking OM was collected in June 2015 using surface-tethered free-drifting traps in the Gotland and Landsort deeps. Sinking particles were collected for a period of 48 and 24 hours at four depths from below the mixed layer and down to hypoxic deep waters (40, 60, 110 and 180 m). Fluxes of POC, PON, POP and amino acids were estimated. We will discuss the effect of low oxygen levels on the biological carbon pump associated with fluxes of OM and sinking particles.

Metallogenesis and tectonics of the Russian Far East, Alaska, and the Canadian Cordillera

USGS Publications Warehouse

Nokleberg, Warren J.; Bundtzen, Thomas K.; Eremin, Roman A.; Ratkin, Vladimir V.; Dawson, Kenneth M.; Shpikerman, Vladimir I.; Goryachev, Nikolai A.; Byalobzhesky, Stanislav G.; Frolov, Yuri F.; Khanchuk, Alexander I.; Koch, Richard D.; Monger, James W.H.; Pozdeev, Anany I.; Rozenblum, Ilya S.; Rodionov, Sergey M.; Parfenov, Leonid M.; Scotese, Christopher R.; Sidorov, Anatoly A.

2005-01-01

The Proterozoic and Phanerozoic metallogenic and tectonic evolution of the Russian Far East, Alaska, and the Canadian Cordillera is recorded in the cratons, craton margins, and orogenic collages of the Circum-North Pacific mountain belts that separate the North Pacific from the eastern North Asian and western North American Cratons. The collages consist of tectonostratigraphic terranes and contained metallogenic belts, which are composed of fragments of igneous arcs, accretionary-wedge and subduction-zone complexes, passive continental margins, and cratons. The terranes are overlapped by continental-margin-arc and sedimentary-basin assemblages and contained metallogenic belts. The metallogenic and geologic history of terranes, overlap assemblages, cratons, and craton margins has been complicated by postaccretion dismemberment and translation during strike-slip faulting that occurred subparallel to continental margins. Seven processes overlapping in time were responsible for most of metallogenic and geologic complexities of the region (1) In the Early and Middle Proterozoic, marine sedimentary basins developed on major cratons and were the loci for ironstone (Superior Fe) deposits and sediment-hosted Cu deposits that occur along both the North Asia Craton and North American Craton Margin. (2) In the Late Proterozoic, Late Devonian, and Early Carboniferous, major periods of rifting occurred along the ancestral margins of present-day Northeast Asia and northwestern North America. The rifting resulted in fragmentation of each continent, and formation of cratonal and passive continental-margin terranes that eventually migrated and accreted to other sites along the evolving margins of the original or adjacent continents. The rifting also resulted in formation of various massive-sulfide metallogenic belts. (3) From about the late Paleozoic through the mid-Cretaceous, a succession of island arcs and contained igneous-arc-related metallogenic belts and tectonically paired subduction zones formed near continental margins. (4) From about mainly the mid-Cretaceous through the present, a succession of continental-margin igneous arcs (some extending offshore into island arcs) and contained metallogenic belts, and tectonically paired subduction zones formed along the continental margins. (5) From about the Jurassic to the present, oblique convergence and rotations caused orogen-parallel sinistral, and then dextral displacements within the plate margins of the Northeast Asian and North American Cratons. The oblique convergences and rotations resulted in the fragmentation, displacement, and duplication of formerly more continuous arcs, subduction zones, passive continental margins, and contained metallogenic belts. These fragments were subsequently accreted along the margins of the expanding continental margins. (6) From the Early Jurassic through Tertiary, movement of the upper continental plates toward subduction zones resulted in strong plate coupling and accretion of the former island arcs, subduction zones, and contained metallogenic belts to continental margins. In this region, the multiple arc accretions were accompanied and followed by crustal thickening, anatexis, metamorphism, formation of collision-related metallogenic belts, and uplift; this resulted in the substantial growth of the North Asian and North American continents. (7) In the middle and late Cenozoic, oblique to orthogonal convergence of the Pacific Plate with present-day Alaska and Northeast Asia resulted in formation of the present ring of volcanoes and contained metallogenic belts around the Circum-North Pacific. Oblique convergence between the Pacific Plate and Alaska also resulted in major dextral-slip faulting in interior and southern Alaska and along the western part of the Aleutian- Wrangell arc. Associated with dextral-slip faulting was crustal extrusion of terranes from western Alaska into the Bering Sea.

Lenalidomide With or Without Rituximab in Treating Patients With Progressive or Relapsed Chronic Lymphocytic Leukemia, Small Lymphocytic Lymphoma, Prolymphocytic Leukemia, or Non-Hodgkin Lymphoma Previously Treated With Donor Stem Cell Transplant

ClinicalTrials.gov

2017-07-24

Adult Nasal Type Extranodal NK/T-cell Lymphoma; Anaplastic Large Cell Lymphoma; Angioimmunoblastic T-cell Lymphoma; Cutaneous B-cell Non-Hodgkin Lymphoma; Extranodal Marginal Zone B-cell Lymphoma of Mucosa-associated Lymphoid Tissue; Hepatosplenic T-cell Lymphoma; Intraocular Lymphoma; Nodal Marginal Zone B-cell Lymphoma; Noncutaneous Extranodal Lymphoma; Peripheral T-cell Lymphoma; Prolymphocytic Leukemia; Recurrent Adult Burkitt Lymphoma; Recurrent Adult Diffuse Large Cell Lymphoma; Recurrent Adult Diffuse Mixed Cell Lymphoma; Recurrent Adult Diffuse Small Cleaved Cell Lymphoma; Recurrent Adult Grade III Lymphomatoid Granulomatosis; Recurrent Adult Immunoblastic Large Cell Lymphoma; Recurrent Adult Lymphoblastic Lymphoma; Recurrent Adult T-cell Leukemia/Lymphoma; Recurrent Cutaneous T-cell Non-Hodgkin Lymphoma; Recurrent Grade 1 Follicular Lymphoma; Recurrent Grade 2 Follicular Lymphoma; Recurrent Grade 3 Follicular Lymphoma; Recurrent Mantle Cell Lymphoma; Recurrent Marginal Zone Lymphoma; Recurrent Mycosis Fungoides/Sezary Syndrome; Recurrent Small Lymphocytic Lymphoma; Refractory Chronic Lymphocytic Leukemia; Refractory Hairy Cell Leukemia; Small Intestine Lymphoma; Splenic Marginal Zone Lymphoma; T-cell Large Granular Lymphocyte Leukemia; Testicular Lymphoma; Waldenström Macroglobulinemia

Study of Akt Inhibitor MK2206 in Patients With Relapsed Lymphoma

ClinicalTrials.gov

2015-10-09

Adult Nasal Type Extranodal NK/T-cell Lymphoma; Anaplastic Large Cell Lymphoma; Angioimmunoblastic T-cell Lymphoma; B-cell Adult Acute Lymphoblastic Leukemia; B-cell Chronic Lymphocytic Leukemia; Cutaneous B-cell Non-Hodgkin Lymphoma; Extranodal Marginal Zone B-cell Lymphoma of Mucosa-associated Lymphoid Tissue; Hepatosplenic T-cell Lymphoma; Intraocular Lymphoma; Nodal Marginal Zone B-cell Lymphoma; Noncutaneous Extranodal Lymphoma; Peripheral T-cell Lymphoma; Recurrent Adult Acute Lymphoblastic Leukemia; Recurrent Adult Diffuse Large Cell Lymphoma; Recurrent Adult Diffuse Mixed Cell Lymphoma; Recurrent Adult Diffuse Small Cleaved Cell Lymphoma; Recurrent Adult Grade III Lymphomatoid Granulomatosis; Recurrent Adult Hodgkin Lymphoma; Recurrent Adult Immunoblastic Large Cell Lymphoma; Recurrent Adult Lymphoblastic Lymphoma; Recurrent Adult T-cell Leukemia/Lymphoma; Recurrent Cutaneous T-cell Non-Hodgkin Lymphoma; Recurrent Grade 1 Follicular Lymphoma; Recurrent Grade 2 Follicular Lymphoma; Recurrent Grade 3 Follicular Lymphoma; Recurrent Mantle Cell Lymphoma; Recurrent Marginal Zone Lymphoma; Recurrent Mycosis Fungoides/Sezary Syndrome; Recurrent Small Lymphocytic Lymphoma; Refractory Hairy Cell Leukemia; Small Intestine Lymphoma; Splenic Marginal Zone Lymphoma; T-cell Adult Acute Lymphoblastic Leukemia; T-cell Large Granular Lymphocyte Leukemia; Testicular Lymphoma; Waldenström Macroglobulinemia

Etoposide, Filgrastim, and Plerixafor in Improving Stem Cell Mobilization in Treating Patients With Non-Hodgkin Lymphoma

ClinicalTrials.gov

2016-12-06

Adult Acute Lymphoblastic Leukemia in Remission; Adult Grade III Lymphomatoid Granulomatosis; Adult Nasal Type Extranodal NK/T-cell Lymphoma; Anaplastic Large Cell Lymphoma; Angioimmunoblastic T-cell Lymphoma; Cutaneous B-cell Non-Hodgkin Lymphoma; Extranodal Marginal Zone B-cell Lymphoma of Mucosa-associated Lymphoid Tissue; Hepatosplenic T-cell Lymphoma; Nodal Marginal Zone B-cell Lymphoma; Noncutaneous Extranodal Lymphoma; Peripheral T-cell Lymphoma; Recurrent Adult Burkitt Lymphoma; Recurrent Adult Diffuse Large Cell Lymphoma; Recurrent Adult Diffuse Mixed Cell Lymphoma; Recurrent Adult Diffuse Small Cleaved Cell Lymphoma; Recurrent Adult Grade III Lymphomatoid Granulomatosis; Recurrent Adult Immunoblastic Large Cell Lymphoma; Recurrent Adult Lymphoblastic Lymphoma; Recurrent Adult T-cell Leukemia/Lymphoma; Recurrent Cutaneous T-cell Non-Hodgkin Lymphoma; Recurrent Grade 1 Follicular Lymphoma; Recurrent Grade 2 Follicular Lymphoma; Recurrent Grade 3 Follicular Lymphoma; Recurrent Mantle Cell Lymphoma; Recurrent Marginal Zone Lymphoma; Recurrent Mycosis Fungoides/Sezary Syndrome; Recurrent Small Lymphocytic Lymphoma; Refractory Chronic Lymphocytic Leukemia; Refractory Hairy Cell Leukemia; Small Intestine Lymphoma; Splenic Marginal Zone Lymphoma; T-cell Large Granular Lymphocyte Leukemia; Testicular Lymphoma; Waldenström Macroglobulinemia

Alisertib in Combination With Vorinostat in Treating Patients With Relapsed or Recurrent Hodgkin Lymphoma, B-Cell Non-Hodgkin Lymphoma, or Peripheral T-Cell Lymphoma

ClinicalTrials.gov

2018-04-10

Adult B Acute Lymphoblastic Leukemia; Adult T Acute Lymphoblastic Leukemia; Anaplastic Large Cell Lymphoma; Angioimmunoblastic T-Cell Lymphoma; Chronic Lymphocytic Leukemia; Extranodal Marginal Zone Lymphoma of Mucosa-Associated Lymphoid Tissue; Hepatosplenic T-Cell Lymphoma; Intraocular Lymphoma; Lymphomatous Involvement of Non-Cutaneous Extranodal Site; Mature T-Cell and NK-Cell Non-Hodgkin Lymphoma; Nodal Marginal Zone Lymphoma; Primary Cutaneous B-Cell Non-Hodgkin Lymphoma; Recurrent Adult Acute Lymphoblastic Leukemia; Recurrent Adult Burkitt Lymphoma; Recurrent Adult Grade III Lymphomatoid Granulomatosis; Recurrent Adult Hodgkin Lymphoma; Recurrent Adult Immunoblastic Lymphoma; Recurrent Adult Lymphoblastic Lymphoma; Recurrent Adult T-Cell Leukemia/Lymphoma; Recurrent Grade 1 Follicular Lymphoma; Recurrent Grade 2 Follicular Lymphoma; Recurrent Grade 3 Follicular Lymphoma; Recurrent Mantle Cell Lymphoma; Recurrent Marginal Zone Lymphoma; Recurrent Mycosis Fungoides and Sezary Syndrome; Recurrent Non-Hodgkin Lymphoma; Recurrent Primary Cutaneous T-Cell Non-Hodgkin Lymphoma; Recurrent Small Lymphocytic Lymphoma; Refractory Chronic Lymphocytic Leukemia; Refractory Hairy Cell Leukemia; Small Intestinal Lymphoma; Splenic Marginal Zone Lymphoma; T-Cell Large Granular Lymphocyte Leukemia; Testicular Lymphoma; Waldenstrom Macroglobulinemia

Satellite microwave and in situ observations of the Weddell Sea ice cover and its marginal ice zone

NASA Technical Reports Server (NTRS)

Comiso, J. C.; Sullivan, C. W.

1986-01-01

The radiative and physical characteristics of the Weddell Sea ice cover and its marginal ice zone are analyzed using multichannel satellite passive microwave data and ship and helicopter observations obtained during the 1983 Antarctic Marine Ecosystem Research. Winter and spring brightness temperatures are examined; spatial variability in the brightness temperatures of consolidated ice in winter and spring cyclic increases and decrease in brightness temperatures of consolidated ice with an amplitude of 50 K at 37 GHz and 20 K at 18 GHz are observed. The roles of variations in air temperature and surface characteristics in the variability of spring brightness temperatures are investigated. Ice concentrations are derived using the frequency and polarization techniques, and the data are compared with the helicopter and ship observations. Temporal changes in the ice margin structure and the mass balance of fresh water and of biological features of the marginal ice zone are studied.

Evolution of passive continental margins and initiation of subduction zones

NASA Astrophysics Data System (ADS)

Cloetingh, S. A. P. L.; Wortel, M. J. R.; Vlaar, N. J.

1982-05-01

Although the initiation of subduction is a key element in plate tectonic schemes for evolution of lithospheric plates, the underlying mechanisms are not well understood. Plate rupture is an important aspect of the process of creating a new subduction zone, as stresses of the order of kilobars are required to fracture oceanic lithosphere1. Therefore initiation of subduction could take place preferentially at pre-existing weakness zones or in regions where the lithosphere is prestressed. As such, transform faults2,3 and passive margins4,5 where the lithosphere is downflexed under the influence of sediment loading have been suggested. From a model study of passive margin evolution we found that ageing of passive margins alone does not make them more suitable sites for initiation of subduction. However, extensive sediment loading on young lithosphere might be an effective mechanism for closure of small ocean basins.

Ku band airborne radar altimeter observations of marginal sea ice during the 1984 Marginal Ice Zone Experiment

NASA Technical Reports Server (NTRS)

Drinkwater, Mark R.

1991-01-01

Pulse-limited, airborne radar data taken in June and July 1984 with a 13.8-GHz altimeter over the Fram Strait marginal ice zone are analyzed with the aid of large-format aerial photography, airborne synthetic aperture radar data, and surface observations. Variations in the radar return pulse waveforms are quantified and correlated with ice properties recorded during the Marginal Ice Zone Experiment. Results indicate that the wide-beam altimeter is a flexible instrument, capable of identifying the ice edge with a high degree of accuracy, calculating the ice concentration, and discriminating a number of different ice classes. This suggests that microwave radar altimeters have a sensitivity to sea ice which has not yet been fully exploited. When fused with SSM/I, AVHRR and ERS-1 synthetic aperture radar imagery, future ERS-1 altimeter data are expected to provide some missing pieces to the sea ice geophysics puzzle.

The Cascadia Subduction Zone: two contrasting models of lithospheric structure

USGS Publications Warehouse

Romanyuk, T.V.; Blakely, R.; Mooney, W.D.

1998-01-01

The Pacific margin of North America is one of the most complicated regions in the world in terms of its structure and present day geodynamic regime. The aim of this work is to develop a better understanding of lithospheric structure of the Pacific Northwest, in particular the Cascadia subduction zone of Southwest Canada and Northwest USA. The goal is to compare and contrast the lithospheric density structure along two profiles across the subduction zone and to interpet the differences in terms of active processes. The subduction of the Juan de Fuca plate beneath North America changes markedly along the length of the subduction zone, notably in the angle of subduction, distribution of earthquakes and volcanism, goelogic and seismic structure of the upper plate, and regional horizontal stress. To investigate these characteristics, we conducted detailed density modeling of the crust and mantle along two transects across the Cascadia subduction zone. One crosses Vancouver Island and the Canadian margin, the other crosses the margin of central Oregon.

Conduit margin heating and deformation during the AD 1886 basaltic Plinian eruption at Tarawera volcano, New Zealand.

PubMed

Schauroth, Jenny; Wadsworth, Fabian B; Kennedy, Ben; von Aulock, Felix W; Lavallée, Yan; Damby, David E; Vasseur, Jérémie; Scheu, Bettina; Dingwell, Donald B

During explosive eruptions, a suspension of gas and pyroclasts rises rapidly within a conduit. Here, we have analysed textures preserved in the walls of a pyroclastic feeder dyke of the AD 1886 Tarawera basaltic Plinian fissure eruption. The samples examined consist of basaltic ash and scoria plastered onto a conduit wall of a coherent rhyolite dome and a welded rhyolitic dome breccia. We examine the textural evidence for the response of the wall material, built of ∼75 vol.% glass and ∼25 vol.% crystals (pore-free equivalent), to mass movement in the adjacent conduit. In the rhyolitic wall material, we quantify the orientation and aspect ratio of biotite crystals as strain markers of simple shear deformation, and interpret juxtaposed regions of vesiculation and vesicle collapse as evidence of conduit wall heating. Systematic changes occur close to the margin: (1) porosity is highly variable, with areas locally vesiculated or densified, (2) biotite crystals are oriented with their long axis parallel to the margin, (3) the biotites have greater aspect ratios close to the margin and (4) the biotite crystals are fractured. We interpret the biotite phenocryst deformation to result from crystal fracture, rotation and cleavage-parallel bookcase translation. These textural observations are inferred to indicate mechanical coupling between the hot gas-ash jet and the conduit wall and reheating of wall rock rhyolite. We couple these observations with a simple 1D conductive heating model to show what minimum temperature the conduit wall needs to reach in order to achieve a temperature above the glass transition throughout the texturally-defined deformed zone. We propose that conduit wall heating and resulting deformation influences conduit margin outgassing and may enhance the intensity of such large basaltic eruptions.

Emerging role of infectious etiologies in the pathogenesis of marginal zone B-cell lymphomas.

PubMed

Zucca, Emanuele; Bertoni, Francesco; Vannata, Barbara; Cavalli, Franco

2014-10-15

Extranodal marginal zone B-cell lymphomas of the mucosa-associated lymphoid tissue (MALT) arise from lymphoid populations that are induced by chronic inflammation in extranodal sites. The most frequently affected organ is the stomach, where MALT lymphoma is incontrovertibly associated with a chronic gastritis induced by a microbial pathogen, Helicobacter pylori. Gastric MALT lymphoma therefore represents a paradigm for evaluating inflammation-associated lymphomagenesis, which may lead to a deeper understanding of a possible etiologic association between other microorganisms and nongastric marginal zone lymphomas. Besides infectious etiology, chronic inflammation caused by autoimmune diseases, such as Sjögren syndrome or Hashimoto thyroiditis, can also carry a significant risk factor for the development of marginal zone lymphoma. In addition to the continuous antigenic drive, additional oncogenic events play a relevant role in lymphoma growth and progression to the point at which the lymphoproliferative process may eventually become independent of antigenic stimulation. Recent studies on MALT lymphomas have in fact demonstrated genetic alterations affecting the NF-κB) pathway, a major signaling pathway involved in many cancers. This review aims to present marginal zone lymphoma as an example of the close pathogenetic link between chronic inflammation and tumor development, with particular attention to the role of infectious agents and the integration of these observations into everyday clinical practice. See all articles in this CCR Focus section, "Paradigm Shifts in Lymphoma." ©2014 American Association for Cancer Research.

MS-275 and Isotretinoin in Treating Patients With Metastatic or Advanced Solid Tumors or Lymphomas

ClinicalTrials.gov

2013-01-23

Adult Grade III Lymphomatoid Granulomatosis; Anaplastic Large Cell Lymphoma; Angioimmunoblastic T-cell Lymphoma; Extranodal Marginal Zone B-cell Lymphoma of Mucosa-associated Lymphoid Tissue; Intraocular Lymphoma; Nodal Marginal Zone B-cell Lymphoma; Primary Central Nervous System Non-Hodgkin Lymphoma; Recurrent Adult Burkitt Lymphoma; Recurrent Adult Diffuse Large Cell Lymphoma; Recurrent Adult Diffuse Mixed Cell Lymphoma; Recurrent Adult Diffuse Small Cleaved Cell Lymphoma; Recurrent Adult Grade III Lymphomatoid Granulomatosis; Recurrent Adult Hodgkin Lymphoma; Recurrent Adult Immunoblastic Large Cell Lymphoma; Recurrent Adult Lymphoblastic Lymphoma; Recurrent Adult T-cell Leukemia/Lymphoma; Recurrent Cutaneous T-cell Non-Hodgkin Lymphoma; Recurrent Grade 1 Follicular Lymphoma; Recurrent Grade 2 Follicular Lymphoma; Recurrent Grade 3 Follicular Lymphoma; Recurrent Mantle Cell Lymphoma; Recurrent Marginal Zone Lymphoma; Recurrent Mycosis Fungoides/Sezary Syndrome; Recurrent Small Lymphocytic Lymphoma; Small Intestine Lymphoma; Splenic Marginal Zone Lymphoma; Stage IV Adult Burkitt Lymphoma; Stage IV Adult Diffuse Large Cell Lymphoma; Stage IV Adult Diffuse Mixed Cell Lymphoma; Stage IV Adult Diffuse Small Cleaved Cell Lymphoma; Stage IV Adult Hodgkin Lymphoma; Stage IV Adult Immunoblastic Large Cell Lymphoma; Stage IV Adult Lymphoblastic Lymphoma; Stage IV Adult T-cell Leukemia/Lymphoma; Stage IV Cutaneous T-cell Non-Hodgkin Lymphoma; Stage IV Grade 1 Follicular Lymphoma; Stage IV Grade 2 Follicular Lymphoma; Stage IV Grade 3 Follicular Lymphoma; Stage IV Mantle Cell Lymphoma; Stage IV Marginal Zone Lymphoma; Stage IV Mycosis Fungoides/Sezary Syndrome; Stage IV Small Lymphocytic Lymphoma; Unspecified Adult Solid Tumor, Protocol Specific; Waldenström Macroglobulinemia

Variations of oxygen-minimum and primary productivity recorded in sediments of the Arabian Sea

NASA Astrophysics Data System (ADS)

Schulte, Sonja; Rostek, Frauke; Bard, Edouard; Rullkötter, Jürgen; Marchal, Olivier

1999-11-01

Two deep-sea sediment cores from the northeastern and the southeastern Arabian Sea were studied in order to reconstruct the palaeoenvironments of the past glacial cycles. Core 136KL was recovered from the high-productivity area off Pakistan within the modern oxygen-minimum zone (OMZ). By contrast, modern primary productivity at the site of MD900963 close to Maldives is moderate and bottom waters are today well oxygenated. For both cores, we reconstructed the changes in palaeoproductivity using a set of biomarkers (alkenones, dinosterol and brassicasterol); the main result is that primary productivity is enhanced during glacial stages and lowered during interstadials. The proxies associated with productivity show a 23 kyr cyclicity corresponding to the precession-related insolation cycle. Palaeoredox conditions were studied in both cores using a new organic geochemical parameter (C 35/C 31- n-alkane ratio) developed by analysing surface sediments from a transect across the OMZ off Pakistan. The value of this ratio in core 136KL shows many variations during the last 65 kyr, indicating that the OMZ was not stable during this time: it disappeared completely during Heinrich- and the Younger Dryas events, pointing to a connection between global oceanic circulation and the stability of the OMZ. The C 35/C 31 ratio determined in sediments of core MD900963 shows that bottom waters remained rather well oxygenated over the last 330 kyr, which is confirmed by comparison with authigenic metal concentrations in the same sediments. A zonally averaged, circulation-biogeochemical ocean model was used to explore how the intermediate Indian Ocean responds to a freshwater flux anomaly at the surface of the North Atlantic. As suggested by the geochemical time series, both the abundance of Southern Ocean Water and the oxygen concentration are significantly increased in response to this freshwater perturbation.

Large and giant hydrocarbon accumulations in the transitional continent-ocean zone

NASA Astrophysics Data System (ADS)

Khain, V. E.; Polyakova, I. D.

2008-05-01

The petroleum resource potential is considered for the Atlantic, West Pacific, and East Pacific types of deepwater continental margins. The most considerable energy resources are concentrated at the Atlantic-type passive margins in the zone transitional to the ocean. The less studied continental slope of backarc seas of the generally active margins of the West Pacific type is currently not so rich in discoveries as the Atlantic-type margin, but is not devoid of certain expectations. In some of their parameters, the margins bounded by continental slopes may be regarded as analogs of classical passive margins. At the margins of the East Pacific type, the petroleum potential is solely confined to transform segments. In the shelf-continental-slope basins of the rift and pull-apart nature, petroleum fields occur largely in the upper fan complex, and to a lesser extent in the lower graben (rift) complex. In light of world experience, the shelf-continental-slope basins of the Arctic and Pacific margins of Russia are evaluated as highly promising.

Diapycnal diffusivity in the core and oxycline of the tropical North Atlantic oxygen minimum zone

NASA Astrophysics Data System (ADS)

Köllner, Manuela; Visbeck, Martin; Tanhua, Toste; Fischer, Tim

2016-08-01

Diapycnal diffusivity estimates from two Tracer Release Experiments (TREs) and microstructure measurements in the oxycline and core of the oxygen minimum zone (OMZ) in the Eastern Tropical North Atlantic (ETNA) are compared. For the first time, two TREs within the same area at different depths were realized: the Guinea Upwelling Tracer Release Experiment (GUTRE) initiated in 2008 in the oxycline at approximately 320 m depth, and the Oxygen Supply Tracer Release Experiment (OSTRE) initiated in 2012 in the core of the OMZ at approximately 410 m depth. The mean diapycnal diffusivity Dz was found to be insignificantly smaller in the OMZ core with (1.06 ± 0.24) × 10- 5 m2 s- 1 compared to (1.11 ± 0.22) × 10- 5 m2 s- 1 90 m shallower in the oxycline. Unexpectedly, GUTRE tracer was detected during two of the OSTRE surveys which showed that the estimated diapycnal diffusivity from GUTRE over a time period of seven years was within the uncertainty of the previous estimates over a time period of three years. The results are consistent with the Dz estimates from microstructure measurements and demonstrate that Dz does not vary significantly vertically in the OMZ within the depth range of 200-600 m and does not change with time. The presence of a seamount chain in the vicinity of the GUTRE injection region did not cause enhanced Dz compared to the smoother bottom topography of the OSTRE injection region, although the analysis of vertical shear spectra from ship ADCP data showed elevated internal wave energy level in the seamount vicinity. However, the two tracer patches covered increasingly overlapping areas with time and thus spatially integrated increasingly similar fields of local diffusivity, as well as the difference in local stratification counteracted the influence of roughness on Dz. For both experiments no significant vertical displacements of the tracer were observed, thus diapycnal upwelling within the ETNA OMZ is below the uncertainty level of 5 m yr- 1.

Desulfovibrio oceani subsp. oceani sp. nov., subsp. nov. and Desulfovibrio oceani subsp. galateae subsp. nov., novel sulfate-reducing bacteria isolated from the oxygen minimum zone off the coast of Peru.

PubMed

Finster, Kai W; Kjeldsen, Kasper U

2010-03-01

Two deltaproteobacterial sulfate reducers, designated strain I.8.1(T) and I.9.1(T), were isolated from the oxygen minimum zone water column off the coast of Peru at 400 and 500 m water depth. The strains were Gram-negative, vibrio-shaped and motile. Both strains were psychrotolerant, grew optimally at 20 degrees C at pH 7.0-8.0 and at 2.5-3.5% NaCl (w/v). The strains grew by utilizing hydrogen/acetate, C(3-4) fatty acids, amino acids and glycerol as electron acceptors for sulfate reduction. Fumarate, lactate and pyruvate supported fermentative growth. Sulfate, sulfite, thiosulfate and taurin supported growth as electron acceptors. Both strains were catalase-positive and highly oxygen-tolerant, surviving 24 days of exposure to atmospheric concentrations. MK6 was the only respiratory quinone. The most prominent cellular fatty acid was iso-17:1-omega9c (18%) for strain I.8.1(T) and iso-17:0-omega9c (14%) for strain I.9.1(T). The G+C contents of their genomic DNA were 45-46 mol%. Phylogenetic analysis of 16S rRNA and dsrAB gene sequences showed that both strains belong to the genus Desulfovibrio. Desulfovibrio acrylicus DSM 10141(T) and Desulfovibrio marinisediminis JCM 14577(T) represented their closest validly described relatives with pairwise 16S rRNA gene sequence identities of 98-99%. The level of DNA-DNA hybridization between strains I.8.1(T) and I.9.1(T) was 30-38%. The two strains shared 10-26% DNA-DNA relatedness with D. acrylicus. Based on a polyphasic investigation it is proposed that strains I.8.1(T) and I.9.1(T) represent a novel species for which the name Desulfovibrio oceani sp. nov. is proposed with the two subspecies D. oceani subsp. oceani (type strain, I.8.1(T) = DSM 21390(T) = JCM 15970(T)) and D. oceani subsp. galateae (type strain, I.9.1(T) = DSM 21391(T) = JCM 15971(T)).

Statistical analysis of iron geochemical data suggests limited late Proterozoic oxygenation

NASA Astrophysics Data System (ADS)

Sperling, Erik A.; Wolock, Charles J.; Morgan, Alex S.; Gill, Benjamin C.; Kunzmann, Marcus; Halverson, Galen P.; MacDonald, Francis A.; Knoll, Andrew H.; Johnston, David T.

2015-07-01

Sedimentary rocks deposited across the Proterozoic-Phanerozoic transition record extreme climate fluctuations, a potential rise in atmospheric oxygen or re-organization of the seafloor redox landscape, and the initial diversification of animals. It is widely assumed that the inferred redox change facilitated the observed trends in biodiversity. Establishing this palaeoenvironmental context, however, requires that changes in marine redox structure be tracked by means of geochemical proxies and translated into estimates of atmospheric oxygen. Iron-based proxies are among the most effective tools for tracking the redox chemistry of ancient oceans. These proxies are inherently local, but have global implications when analysed collectively and statistically. Here we analyse about 4,700 iron-speciation measurements from shales 2,300 to 360 million years old. Our statistical analyses suggest that subsurface water masses in mid-Proterozoic oceans were predominantly anoxic and ferruginous (depleted in dissolved oxygen and iron-bearing), but with a tendency towards euxinia (sulfide-bearing) that is not observed in the Neoproterozoic era. Analyses further indicate that early animals did not experience appreciable benthic sulfide stress. Finally, unlike proxies based on redox-sensitive trace-metal abundances, iron geochemical data do not show a statistically significant change in oxygen content through the Ediacaran and Cambrian periods, sharply constraining the magnitude of the end-Proterozoic oxygen increase. Indeed, this re-analysis of trace-metal data is consistent with oxygenation continuing well into the Palaeozoic era. Therefore, if changing redox conditions facilitated animal diversification, it did so through a limited rise in oxygen past critical functional and ecological thresholds, as is seen in modern oxygen minimum zone benthic animal communities.

40 CFR 63.1257 - Test methods and compliance procedures.

Code of Federal Regulations, 2012 CFR

2012-07-01

...)(2), or 63.1256(h)(2)(i)(C) with a minimum residence time of 0.5 seconds and a minimum temperature of... temperature of the organic HAP, must consider the vent stream flow rate, and must establish the design minimum and average temperature in the combustion zone and the combustion zone residence time. (B) For a...

40 CFR 63.1257 - Test methods and compliance procedures.

Code of Federal Regulations, 2011 CFR

2011-07-01

...)(2), or 63.1256(h)(2)(i)(C) with a minimum residence time of 0.5 seconds and a minimum temperature of... temperature of the organic HAP, must consider the vent stream flow rate, and must establish the design minimum and average temperature in the combustion zone and the combustion zone residence time. (B) For a...

40 CFR 63.1257 - Test methods and compliance procedures.

Code of Federal Regulations, 2010 CFR

2010-07-01

...)(2), or 63.1256(h)(2)(i)(C) with a minimum residence time of 0.5 seconds and a minimum temperature of... temperature of the organic HAP, must consider the vent stream flow rate, and must establish the design minimum and average temperature in the combustion zone and the combustion zone residence time. (B) For a...

Lenalidomide and Combination Chemotherapy (DA-EPOCH-R) in Treating Patients With MYC-Associated B-Cell Lymphomas

ClinicalTrials.gov

2017-09-28

Adult Grade III Lymphomatoid Granulomatosis; B-cell Chronic Lymphocytic Leukemia; Contiguous Stage II Adult Diffuse Large Cell Lymphoma; Contiguous Stage II Adult Diffuse Mixed Cell Lymphoma; Contiguous Stage II Adult Diffuse Small Cleaved Cell Lymphoma; Contiguous Stage II Adult Immunoblastic Large Cell Lymphoma; Contiguous Stage II Grade 1 Follicular Lymphoma; Contiguous Stage II Grade 2 Follicular Lymphoma; Contiguous Stage II Grade 3 Follicular Lymphoma; Contiguous Stage II Mantle Cell Lymphoma; Contiguous Stage II Marginal Zone Lymphoma; Contiguous Stage II Small Lymphocytic Lymphoma; Cutaneous B-cell Non-Hodgkin Lymphoma; Extranodal Marginal Zone B-cell Lymphoma of Mucosa-associated Lymphoid Tissue; Intraocular Lymphoma; Nodal Marginal Zone B-cell Lymphoma; Noncontiguous Stage II Adult Diffuse Large Cell Lymphoma; Noncontiguous Stage II Adult Diffuse Mixed Cell Lymphoma; Noncontiguous Stage II Adult Diffuse Small Cleaved Cell Lymphoma; Noncontiguous Stage II Adult Immunoblastic Large Cell Lymphoma; Noncontiguous Stage II Grade 1 Follicular Lymphoma; Noncontiguous Stage II Grade 2 Follicular Lymphoma; Noncontiguous Stage II Grade 3 Follicular Lymphoma; Noncontiguous Stage II Mantle Cell Lymphoma; Noncontiguous Stage II Marginal Zone Lymphoma; Noncontiguous Stage II Small Lymphocytic Lymphoma; Progressive Hairy Cell Leukemia, Initial Treatment; Small Intestine Lymphoma; Splenic Marginal Zone Lymphoma; Stage 0 Chronic Lymphocytic Leukemia; Stage I Adult Diffuse Large Cell Lymphoma; Stage I Adult Diffuse Mixed Cell Lymphoma; Stage I Adult Diffuse Small Cleaved Cell Lymphoma; Stage I Adult Hodgkin Lymphoma; Stage I Adult Immunoblastic Large Cell Lymphoma; Stage I Chronic Lymphocytic Leukemia; Stage I Grade 1 Follicular Lymphoma; Stage I Grade 2 Follicular Lymphoma; Stage I Grade 3 Follicular Lymphoma; Stage I Mantle Cell Lymphoma; Stage I Marginal Zone Lymphoma; Stage I Small Lymphocytic Lymphoma; Stage II Adult Hodgkin Lymphoma; Stage II Chronic Lymphocytic Leukemia; Stage II Small Lymphocytic Lymphoma; Stage III Adult Diffuse Large Cell Lymphoma; Stage III Adult Diffuse Mixed Cell Lymphoma; Stage III Adult Diffuse Small Cleaved Cell Lymphoma; Stage III Adult Hodgkin Lymphoma; Stage III Adult Immunoblastic Large Cell Lymphoma; Stage III Chronic Lymphocytic Leukemia; Stage III Grade 1 Follicular Lymphoma; Stage III Grade 2 Follicular Lymphoma; Stage III Grade 3 Follicular Lymphoma; Stage III Mantle Cell Lymphoma; Stage III Marginal Zone Lymphoma; Stage III Small Lymphocytic Lymphoma; Stage IV Adult Diffuse Large Cell Lymphoma; Stage IV Adult Diffuse Mixed Cell Lymphoma; Stage IV Adult Diffuse Small Cleaved Cell Lymphoma; Stage IV Adult Hodgkin Lymphoma; Stage IV Adult Immunoblastic Large Cell Lymphoma; Stage IV Chronic Lymphocytic Leukemia; Stage IV Grade 1 Follicular Lymphoma; Stage IV Grade 2 Follicular Lymphoma; Stage IV Grade 3 Follicular Lymphoma; Stage IV Mantle Cell Lymphoma; Stage IV Marginal Zone Lymphoma; Stage IV Small Lymphocytic Lymphoma; Testicular Lymphoma; Untreated Hairy Cell Leukemia; Waldenström Macroglobulinemia

Reproducibility of Ba/Ca variations recorded by northeast Pacific bamboo corals

NASA Astrophysics Data System (ADS)

Serrato Marks, G.; LaVigne, M.; Hill, T. M.; Sauthoff, W.; Guilderson, T. P.; Roark, E. B.; Dunbar, R. B.; Horner, T. J.

2017-09-01

Trace elemental ratios preserved in the calcitic skeleton of bamboo corals have been shown to serve as archives of past ocean conditions. The concentration of dissolved barium (BaSW), a bioactive nutrientlike element, is linked to biogeochemical processes such as the cycling and export of nutrients. Recent work has calibrated bamboo coral Ba/Ca, a new BaSW proxy, using corals spanning the oxygen minimum zone beneath the California Current System. However, it was previously unclear whether Ba/Cacoral records were internally reproducible. Here we investigate the accuracy of using laser ablation inductively coupled plasma mass spectrometry for Ba/Cacoral analyses and test the internal reproducibility of Ba/Ca among replicate radial transects in the calcite of nine bamboo corals collected from the Gulf of Alaska (643-720 m) and the California margin (870-2054 m). Data from replicate Ba/Ca transects were aligned using visible growth bands to account for nonconcentric growth; smoothed data were reproducible within 4% for eight corals (n = 3 radii/coral). This intracoral reproducibility further validates using bamboo coral Ba/Ca for BaSW reconstructions. Sections of the Ba/Ca records that were potentially influenced by noncarbonate bound Ba phases occurred in regions where elevated Mg/Ca or Pb/Ca and coincided with anomalous regions on photomicrographs. After removing these regions of the records, increased Ba/Cacoral variability was evident in corals between 800 and 1500 m. These findings support additional proxy validation to understand BaSW variability on interannual timescales, which could lead to new insights into deep sea biogeochemistry over the past several centuries.

Determination of Stone-Mastic Asphalt Concrete Durability

NASA Astrophysics Data System (ADS)

Yastremsky, D. A.; Abaidullina, T. N.; Chepur, P. V.

2018-05-01

The paper is focused on determination of durability of the stone-mastic asphalt (SMA) concrete, containing various stabilizing additives: "Armidon" (authors’ development) and "Viatop". At the first stage of experiments, the APA method was used to determine the rutting in the SMA containing these additives. Strength test for only top layers of asphalt concrete surface is insufficient for the calculation of the pavement fatigue resistance limits. Due to this fact, a comprehensive approach was employed which incorporates the interaction of the surface and subgrade natural soil. To analyze the road surface stress-strain state and to determine the durability margin, a numerical model was used (describes the processes of fatigue life). The model was developed basing on the finite element method (FEM) in the ANSYS program. Conducted studies and numerical calculations allowed obtaining the minimum and maximum stress values in the structure affected zones and in the zones of plastic deformations occurrence in artificial and natural bases. It allows predicting deformation processes during repeated wheel loads caused by moving vehicles. In course of studies, the results of static stresses in the pavement were also obtained.

White Shark Offshore Habitat: A Behavioral and Environmental Characterization of the Eastern Pacific Shared Offshore Foraging Area

PubMed Central

Nasby-Lucas, Nicole; Dewar, Heidi; Lam, Chi H.; Goldman, Kenneth J.; Domeier, Michael L.

2009-01-01

Background Although much is known about the behavior of white sharks in coastal regions, very little is known about their vertical movements offshore in the eastern Pacific where they spend up to five months. We provide the first detailed description of the offshore habitat use of white sharks in the eastern North Pacific. Methodology/Principal Findings This study uses 2-min data from four recovered pop-up satellite archival tags deployed at Guadalupe Island (2002 and 2005). Deployments ranged from 5.4 to 8.2 months. Two predominant vertical patterns were described. The first was a bimodal vertical pattern with time spent at the surface and at depth, which was observed while traveling. The second was a repetitive oscillatory diving mode displayed by sharks in the Shared Offshore Foraging Area (SOFA). For all four datasets the average maximum daily dive depths ranged from 442.5 to 492.8 m and were typically associated with dissolved oxygen concentrations of above 1.7 ml L−1. Although infrequent, occasional dives to near 1000 m with a minimum temperature of 3.9°C and a minimum O2 level of 0.3 ml L−1 were observed. Conclusions/Significance Recovered pop-up satellite tags from Guadalupe Island white sharks advance our understanding of the vertical habitat use of white sharks while offshore. The bimodal vertical pattern during traveling is most likely related to geolocation. The oscillatory dive pattern is likely associated with foraging. While feeding is not documented, foraging is likely occurring in association with the deep scattering layer. Diving depths were not limited by temperature but were constrained by O2 levels below approximately 1.5 ml L−1. While oxygen may limit the extent of sharks' vertical movements, it will also impact prey distribution. Consequently, the shallow oxygen minimum zone in the SOFA may act to concentrate prey, thus enhancing foraging opportunities in these oligotrophic waters. PMID:20011032

Large fluctuations of dissolved oxygen in the Indian and Pacific oceans during Dansgaard-Oeschger oscillations caused by variations of North Atlantic Deep Water subduction

USGS Publications Warehouse

Schmittner, A.; Galbraith, E.D.; Hostetler, S.W.; Pedersen, Thomas F.; Zhang, R.

2007-01-01

Paleoclimate records from glacial Indian and Pacific oceans sediments document millennial-scale fluctuations of subsurface dissolved oxygen levels and denitrification coherent with North Atlantic temperature oscillations. Yet the mechanism of this teleconnection between the remote ocean basins remains elusive. Here we present model simulations of the oxygen and nitrogen cycles that explain how changes in deepwater subduction in the North Atlantic can cause large and synchronous variations of oxygen minimum zones, throughout the Northern Hemisphere of the Indian and Pacific oceans, consistent with the paleoclimate records. Cold periods in the North Atlantic are associated with reduced nutrient delivery to the upper Indo-Pacific oceans, thereby decreasing productivity. Reduced export production diminishes subsurface respiration of organic matter leading to higher oxygen concentrations and less denitrification. This effect of reduced oxygen consumption dominates at low latitudes. At high latitudes in the Southern Ocean and North Pacific, increased mixed layer depths and steepening of isopycnals improve ocean ventilation and oxygen supply to the subsurface. Atmospheric teleconnections through changes in wind-driven ocean circulation modify this basin-scale pattern regionally. These results suggest that changes in the Atlantic Ocean circulation, similar to those projected by climate models to possibly occur in the centuries to come because of anthropogenic climate warming, can have large effects on marine ecosystems and biogeochemical cycles even in remote areas. Copyright 2007 by the American Geophysical Union.

Anoxygenic photosynthesis modulated Proterozoic oxygen and sustained Earth's middle age

PubMed Central

Johnston, D. T.; Wolfe-Simon, F.; Pearson, A.; Knoll, A. H.

2009-01-01

Molecular oxygen (O2) began to accumulate in the atmosphere and surface ocean ca. 2,400 million years ago (Ma), but the persistent oxygenation of water masses throughout the oceans developed much later, perhaps beginning as recently as 580–550 Ma. For much of the intervening interval, moderately oxic surface waters lay above an oxygen minimum zone (OMZ) that tended toward euxinia (anoxic and sulfidic). Here we illustrate how contributions to primary production by anoxygenic photoautotrophs (including physiologically versatile cyanobacteria) influenced biogeochemical cycling during Earth's middle age, helping to perpetuate our planet's intermediate redox state by tempering O2 production. Specifically, the ability to generate organic matter (OM) using sulfide as an electron donor enabled a positive biogeochemical feedback that sustained euxinia in the OMZ. On a geologic time scale, pyrite precipitation and burial governed a second feedback that moderated sulfide availability and water column oxygenation. Thus, we argue that the proportional contribution of anoxygenic photosynthesis to overall primary production would have influenced oceanic redox and the Proterozoic O2 budget. Later Neoproterozoic collapse of widespread euxinia and a concomitant return to ferruginous (anoxic and Fe2+ rich) subsurface waters set in motion Earth's transition from its prokaryote-dominated middle age, removing a physiological barrier to eukaryotic diversification (sulfide) and establishing, for the first time in Earth's history, complete dominance of oxygenic photosynthesis in the oceans. This paved the way for the further oxygenation of the oceans and atmosphere and, ultimately, the evolution of complex multicellular organisms. PMID:19805080

Anoxygenic photosynthesis modulated Proterozoic oxygen and sustained Earth's middle age.

PubMed

Johnston, D T; Wolfe-Simon, F; Pearson, A; Knoll, A H

2009-10-06

Molecular oxygen (O(2)) began to accumulate in the atmosphere and surface ocean ca. 2,400 million years ago (Ma), but the persistent oxygenation of water masses throughout the oceans developed much later, perhaps beginning as recently as 580-550 Ma. For much of the intervening interval, moderately oxic surface waters lay above an oxygen minimum zone (OMZ) that tended toward euxinia (anoxic and sulfidic). Here we illustrate how contributions to primary production by anoxygenic photoautotrophs (including physiologically versatile cyanobacteria) influenced biogeochemical cycling during Earth's middle age, helping to perpetuate our planet's intermediate redox state by tempering O(2) production. Specifically, the ability to generate organic matter (OM) using sulfide as an electron donor enabled a positive biogeochemical feedback that sustained euxinia in the OMZ. On a geologic time scale, pyrite precipitation and burial governed a second feedback that moderated sulfide availability and water column oxygenation. Thus, we argue that the proportional contribution of anoxygenic photosynthesis to overall primary production would have influenced oceanic redox and the Proterozoic O(2) budget. Later Neoproterozoic collapse of widespread euxinia and a concomitant return to ferruginous (anoxic and Fe(2+) rich) subsurface waters set in motion Earth's transition from its prokaryote-dominated middle age, removing a physiological barrier to eukaryotic diversification (sulfide) and establishing, for the first time in Earth's history, complete dominance of oxygenic photosynthesis in the oceans. This paved the way for the further oxygenation of the oceans and atmosphere and, ultimately, the evolution of complex multicellular organisms.

On the initiation of subduction

NASA Technical Reports Server (NTRS)

Mueller, Steve; Phillips, Roger J.

1991-01-01

Estimates of shear resistance associated with lithospheric thrusting and convergence represent lower bounds on the force necessary to promote trench formation. Three environments proposed as preferential sites of incipient subduction are investigated: passive continental margins, transform faults/fracture zones, and extinct ridges. None of these are predicted to convert into subduction zones simply by the accumulation of local gravitational stresses. Subduction cannot initiate through the foundering of dense oceanic lithosphere immediately adjacent to passive continental margins. The attempted subduction of buoyant material at a mature trench can result in large compressional forces in both subducting and overriding plates. This is the only tectonic force sufficient to trigger the nucleation of a new subduction zone. The ubiquitous distribution of transform faults and fracture zones, combined with the common proximity of these features to mature subduction complexes, suggests that they may represent the most likely sites of trench formation if they are even marginally weaker than normal oceanic lithosphere.

On the initiation of subduction zones

NASA Astrophysics Data System (ADS)

Cloetingh, Sierd; Wortel, Rinus; Vlaar, N. J.

1989-03-01

Analysis of the relation between intraplate stress fields and lithospheric rheology leads to greater insight into the role that initiation of subduction plays in the tectonic evolution of the lithosphere. Numerical model studies show that if after a short evolution of a passive margin (time span a few tens of million years) subduction has not yet started, continued aging of the passive margin alone does not result in conditions more favorable for transformation into an active margin. Although much geological evidence is available in supporting the key role small ocean basins play in orogeny and ophiolite emplacement, evolutionary frameworks of the Wilson cycle usually are cast in terms of opening and closing of wide ocean basins. We propose a more limited role for large oceans in the Wilson cycle concept. In general, initiation of subduction at passive margins requires the action of external plate-tectonic forces, which will be most effective for young passive margins prestressed by thick sedimentary loads. It is not clear how major subduction zones (such as those presently ringing the Pacific Basin) form but it is unlikely they form merely by aging of oceanic lithosphere. Conditions likely to exist in very young oceanic regions are quite favorable for the development of subduction zones, which might explain the lack of preservation of back-arc basins and marginal seas. Plate reorganizations probably occur predominantly by the formation of new spreading ridges, because stress relaxation in the lithosphere takes place much more efficiently through this process than through the formation of new subduction zones.

DOE Office of Scientific and Technical Information (OSTI.GOV)

McGregor, Hugh C. J., E-mail: hugh.mcgregor@ucsf.edu; Saeed, Maythem, E-mail: maythem.saeed@ucsf.edu; Surman, Andrew, E-mail: andrew.surman@ucsf.edu

PurposeTo investigate the feasibility of percutaneous gallbladder cryoablation (GBC) under CT guidance in a swine model with histopathologic correlation.Materials and MethodsInstitutional Animal Care and Use Committee approval was obtained for this study protocol. Five pigs underwent GBC. Under CT guidance, 3–4 cryoprobes were positioned percutaneously at the gallbladder margins. Thermocouple probes were placed percutaneously at the gallbladder fundus, neck, free wall, and gallbladder fossa. Two freeze–thaw cycles ranging from 10 to 26 min were performed. The subjects were sacrificed 5 h after cryoablation. The gallbladder and bile ducts were resected, stained, and examined microscopically.ResultsGBC was completed in all subjects. A 10-mm ablationmore » margin was achieved beyond all gallbladder walls. Thermocouple probes reached at least −20 °C. Intra-procedural body temperature decreased to a minimum of 35 °C but recovered after the procedure. Intra- and post-procedural vital signs otherwise remained within physiologic parameters. Non-target ablation occurred in the stomach and colon of the first two subjects. Histology demonstrated complete denudation of the gallbladder epithelium, hemorrhage, and edema within the muscularis layer, and preservation of the microscopic architecture of the common bile duct in all cases.ConclusionPercutaneous gallbladder cryoablation is feasible, with adequate ablation margins obtained and histologic changes demonstrating transmural necrosis. Adjacent structures included in the ablation may require conservative ablation zones, hydrodissection, or continuous saline lavage.« less

Meaning-Making and Motivation in Urban Zones of Marginalization: Mapping the Ecocultural Context of Educational Goals

ERIC Educational Resources Information Center

Eksner, H. Julia

2015-01-01

This article explores how achievement motivation is framed by the larger context of the devaluation of educational capital that is currently underway in urban centers in Europe. The article elucidates the shared cultural meaning working-class German Turkish youths living in urban marginalized zones in Berlin, Germany create about the decreasing…

Remote sensing of the Fram Strait marginal ice zone

USGS Publications Warehouse

Shuchman, R.A.; Burns, B.A.; Johannessen, O.M.; Josberger, E.G.; Campbell, W.J.; Manley, T.O.; Lannelongue, N.

1987-01-01

Sequential remote sensing images of the Fram Strait marginal ice zone played a key role in elucidating the complex interactions of the atmosphere, ocean, and sea ice. Analysis of a subset of these images covering a 1-week period provided quantitative data on the mesoscale ice morphology, including ice edge positions, ice concentrations, floe size distribution, and ice kinematics. The analysis showed that, under light to moderate wind conditions, the morphology of the marginal ice zone reflects the underlying ocean circulation. High-resolution radar observations showed the location and size of ocean eddies near the ice edge. Ice kinematics from sequential radar images revealed an ocean eddy beneath the interior pack ice that was verified by in situ oceanographic measurements.

Transformation of marginal zone lymphoma (and association with other lymphomas).

PubMed

Casulo, Carla; Friedberg, Jonathan

Marginal zone lymphomas (MZL) are a diverse group of indolent lymphoproliferative disorders that comprise three subtypes: nodal, splenic and mucosal associated marginal zone lymphomas (MALT). Histologic transformation (HT) to an aggressive lymphoma is a rare event that can occur in any subtype, and at lower frequency compared to other indolent non Hodgkin lymphomas (NHL) like follicular lymphoma. There are few data directly associated with risk and prognosis of transformation in MZL. However, recent advances in the understanding of molecular and genetic features of MALT have contributed to an evolving appreciation of HT in this disease. Optimal treatment of HT of MZL remains unknown. Much of the approach to managing transformed MZL is extrapolated from other indolent NHLs. Copyright © 2016 Elsevier Ltd. All rights reserved.