Science.gov

Sample records for marina grishakova silvi

  1. A Model of Beaver Meadow Complex Evolution in the Silvies River Basin, Oregon.

    NASA Astrophysics Data System (ADS)

    Nash, C.; Grant, G.; Campbell, S. D.

    2014-12-01

    There is increasing evidence to suggest that the pervasive incision seen in the American West is due, in part, to the removal of beaver (Castor canadensis) in the first half of the 19th century. New restoration strategies for these systems focus on the reintroduction of beaver and construction of beaver dam analogs. Such dams locally raise streams beds and water tables, reconnect incised channels to their former floodplains, trap sediment, increase hydraulic diversity, and promote riparian vegetation. However, the geomorphic and hydrologic impacts of both the original beaver dams and their analogs are poorly understood. Observations in the Silvies River basin in Oregon, USA - an upland, semi-arid catchment with extremely high historic beaver populations and a presently recovering population, inform a conceptual model for valley floor evolution with beaver dams. The evolution of the beaver dam complex is characterized by eight stages of morphologic adjustment: water impoundment, sediment deposition, pond filling, multi-thread meadow creation, dam breaching, channel incision, channel widening, and floodplain development. Well-constructed beaver dams, given sufficient time and sediment flux, will evolve from a series of ponds to a multi-threaded channel flowing through a wet meadow complex. If a dam in the system fails, due to overtopping, undercutting, lack of maintenance, or abandonment, the upstream channel will concentrate into a single channel and incise, followed over time by widening once critical bank heights are exceeded. From stratigraphic, dendrochronologic, and geomorphic measurements, we are constraining average timescales associated with each stage's duration and transitional period. Measured sedimentation rates behind modern beaver dam analogs on five stream systems permit calculation of sediment flux over recent time periods, and aid in developing regional rates of sediment deposition over a range of drainage areas and gradients. Stratigraphic and

  2. 33 CFR 80.1118 - Marina Del Rey, CA.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... 33 Navigation and Navigable Waters 1 2011-07-01 2011-07-01 false Marina Del Rey, CA. 80.1118... NAVIGATION RULES COLREGS DEMARCATION LINES Pacific Coast § 80.1118 Marina Del Rey, CA. (a) A line drawn from Marina Del Rey Breakwater South Light 1 to Marina Del Rey Light 4. (b) A line drawn from Marina Del...

  3. 33 CFR 80.1118 - Marina Del Rey, CA.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... 33 Navigation and Navigable Waters 1 2013-07-01 2013-07-01 false Marina Del Rey, CA. 80.1118... NAVIGATION RULES COLREGS DEMARCATION LINES Pacific Coast § 80.1118 Marina Del Rey, CA. (a) A line drawn from Marina Del Rey Breakwater South Light 1 to Marina Del Rey Light 4. (b) A line drawn from Marina Del...

  4. 33 CFR 80.1118 - Marina Del Rey, CA.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... 33 Navigation and Navigable Waters 1 2012-07-01 2012-07-01 false Marina Del Rey, CA. 80.1118... NAVIGATION RULES COLREGS DEMARCATION LINES Pacific Coast § 80.1118 Marina Del Rey, CA. (a) A line drawn from Marina Del Rey Breakwater South Light 1 to Marina Del Rey Light 4. (b) A line drawn from Marina Del...

  5. 33 CFR 80.1118 - Marina Del Rey, CA.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... 33 Navigation and Navigable Waters 1 2014-07-01 2014-07-01 false Marina Del Rey, CA. 80.1118... NAVIGATION RULES COLREGS DEMARCATION LINES Pacific Coast § 80.1118 Marina Del Rey, CA. (a) A line drawn from Marina Del Rey Breakwater South Light 1 to Marina Del Rey Light 4. (b) A line drawn from Marina Del...

  6. 18 CFR 1304.404 - Commercial marina harbor limits.

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... 18 Conservation of Power and Water Resources 2 2011-04-01 2011-04-01 false Commercial marina... ALTERATIONS Miscellaneous § 1304.404 Commercial marina harbor limits. The landward limits of commercial marina... of harbors at commercial marinas will be designated by TVA on the basis of the size and extent...

  7. 18 CFR 1304.404 - Commercial marina harbor limits.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 18 Conservation of Power and Water Resources 2 2010-04-01 2010-04-01 false Commercial marina... ALTERATIONS Miscellaneous § 1304.404 Commercial marina harbor limits. The landward limits of commercial marina... of harbors at commercial marinas will be designated by TVA on the basis of the size and extent...

  8. 33 CFR 80.1124 - Ventura Marina, CA.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... 33 Navigation and Navigable Waters 1 2011-07-01 2011-07-01 false Ventura Marina, CA. 80.1124... NAVIGATION RULES COLREGS DEMARCATION LINES Pacific Coast § 80.1124 Ventura Marina, CA. A line drawn from Ventura Marina South Jetty Light 6 to Ventura Marina Breakwater South Light 3; thence to Ventura...

  9. 33 CFR 80.1124 - Ventura Marina, CA.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... 33 Navigation and Navigable Waters 1 2012-07-01 2012-07-01 false Ventura Marina, CA. 80.1124... NAVIGATION RULES COLREGS DEMARCATION LINES Pacific Coast § 80.1124 Ventura Marina, CA. A line drawn from Ventura Marina South Jetty Light 6 to Ventura Marina Breakwater South Light 3; thence to Ventura...

  10. 33 CFR 80.1124 - Ventura Marina, CA.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... 33 Navigation and Navigable Waters 1 2014-07-01 2014-07-01 false Ventura Marina, CA. 80.1124... NAVIGATION RULES COLREGS DEMARCATION LINES Pacific Coast § 80.1124 Ventura Marina, CA. A line drawn from Ventura Marina South Jetty Light 6 to Ventura Marina Breakwater South Light 3; thence to Ventura...

  11. 18 CFR 1304.404 - Commercial marina harbor limits.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... 18 Conservation of Power and Water Resources 2 2014-04-01 2014-04-01 false Commercial marina... ALTERATIONS Miscellaneous § 1304.404 Commercial marina harbor limits. The landward limits of commercial marina... of harbors at commercial marinas will be designated by TVA on the basis of the size and extent...

  12. 33 CFR 80.1124 - Ventura Marina, CA.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... 33 Navigation and Navigable Waters 1 2013-07-01 2013-07-01 false Ventura Marina, CA. 80.1124... NAVIGATION RULES COLREGS DEMARCATION LINES Pacific Coast § 80.1124 Ventura Marina, CA. A line drawn from Ventura Marina South Jetty Light 6 to Ventura Marina Breakwater South Light 3; thence to Ventura...

  13. 18 CFR 1304.404 - Commercial marina harbor limits.

    Code of Federal Regulations, 2012 CFR

    2012-04-01

    ... 18 Conservation of Power and Water Resources 2 2012-04-01 2012-04-01 false Commercial marina... ALTERATIONS Miscellaneous § 1304.404 Commercial marina harbor limits. The landward limits of commercial marina... of harbors at commercial marinas will be designated by TVA on the basis of the size and extent...

  14. 18 CFR 1304.404 - Commercial marina harbor limits.

    Code of Federal Regulations, 2013 CFR

    2013-04-01

    ... 18 Conservation of Power and Water Resources 2 2013-04-01 2012-04-01 true Commercial marina harbor... Miscellaneous § 1304.404 Commercial marina harbor limits. The landward limits of commercial marina harbor areas... at commercial marinas will be designated by TVA on the basis of the size and extent of facilities...

  15. 17. MARINA WAY, HARBOUR WAY, AND MARITIME CHILD DEVELOPMENT CENTER ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    17. MARINA WAY, HARBOUR WAY, AND MARITIME CHILD DEVELOPMENT CENTER (SEE ALSO HABS No. CA-2718), WITH RICHMOND SHIPYARD NO. 3. S. - Rosie the Riveter National Historical Park, 1401 Marina Way South, Richmond, Contra Costa County, CA

  16. ASSESSING ROOT DEMOGRAPHY AND CARBOHYDRATE DYNAMICS OF ZOSTERA MARINA

    EPA Science Inventory

    To help establish protective criteria for Zostera marina a more complete understanding of the factors affecting the status, condition, distribution and ecophysiology of Z. marina is needed. While Z. marina shoots are readily observed, assessing growth and carbon dynamics of roots...

  17. 33 CFR 80.1118 - Marina Del Rey, CA.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 33 Navigation and Navigable Waters 1 2010-07-01 2010-07-01 false Marina Del Rey, CA. 80.1118 Section 80.1118 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND SECURITY INTERNATIONAL NAVIGATION RULES COLREGS DEMARCATION LINES Pacific Coast § 80.1118 Marina Del Rey, CA. (a) A line drawn from Marina Del Rey Breakwater South Light...

  18. 33 CFR 80.1124 - Ventura Marina, CA.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 33 Navigation and Navigable Waters 1 2010-07-01 2010-07-01 false Ventura Marina, CA. 80.1124 Section 80.1124 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND SECURITY INTERNATIONAL NAVIGATION RULES COLREGS DEMARCATION LINES Pacific Coast § 80.1124 Ventura Marina, CA. A line drawn from Ventura Marina South Jetty Light 6...

  19. Saint Marina: the protectress of nephrology.

    PubMed

    Eftychiadis, A C; Marketos, S G

    1999-01-01

    Saint virgin and martyr Marina (Margarita) of Antioch in Pisidia (255-270) is recognized as the patron saint of kidney sufferers and the protectress of nephrology. Beginning in the 13th century she heals in particular patients suffering from nephropathies, pregnant women having a difficult childbirth, barren women and sickly children. She protects the patients from every side effect and complication. Saint Marina is represented in hagiography as a victor, defeating the dragon satan, holding a hammer or a cross and wearing a belt around her back in the area of kidneys. According to writers, artists and sculptors the belt is the perceivable means of Saint Marina for the miraculous recovery from and healing of kidney diseases. Therefore, kidney sufferers and pregnant women put belts upon her relics for blessing and then wore them. From the Middle Ages and Renaissance and up to the contemporary period Saint Marina (Margarita) was considered the patron saint of kidney sufferers. Justifiably she is recognized by the modern medical world as the protectress of nephrology.

  20. Saint Marina: the protectress of nephrology.

    PubMed

    Eftychiadis, A C; Marketos, S G

    1999-01-01

    Saint virgin and martyr Marina (Margarita) of Antioch in Pisidia (255-270) is recognized as the patron saint of kidney sufferers and the protectress of nephrology. Beginning in the 13th century she heals in particular patients suffering from nephropathies, pregnant women having a difficult childbirth, barren women and sickly children. She protects the patients from every side effect and complication. Saint Marina is represented in hagiography as a victor, defeating the dragon satan, holding a hammer or a cross and wearing a belt around her back in the area of kidneys. According to writers, artists and sculptors the belt is the perceivable means of Saint Marina for the miraculous recovery from and healing of kidney diseases. Therefore, kidney sufferers and pregnant women put belts upon her relics for blessing and then wore them. From the Middle Ages and Renaissance and up to the contemporary period Saint Marina (Margarita) was considered the patron saint of kidney sufferers. Justifiably she is recognized by the modern medical world as the protectress of nephrology. PMID:10213803

  1. MARINA & MAINE STREETS FACING NW. DARKER COLORED HOME ON ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    MARINA & MAINE STREETS FACING NW. DARKER COLORED HOME ON SE CORNER. NYSTROM VILLAGE, LIKE ATCHISON VILLAGE (HAER CA-326-N), HOUSED WORKERS DURING WORLD WAR II - Rosie the Riveter National Historical Park, Nystrom Village, Marina & Maine Streets, Richmond, Contra Costa County, CA

  2. TOTAL DISSOLVED AND BIOAVAILABLE METALS AT LAKE TEXOMA MARINAS

    EPA Science Inventory

    Dissolved metals in water and total metals in sediments have been measured at marina areas in Lake Texoma during June 1999 to October 2001, and October 2001, respectively. The metals most often found in the highest concentrations in marina water were Na and Ca, followed by Mg an...

  3. 33 CFR 110.111 - Marina del Rey Harbor, Calif.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... 33 Navigation and Navigable Waters 1 2013-07-01 2013-07-01 false Marina del Rey Harbor, Calif. 110.111 Section 110.111 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND SECURITY ANCHORAGES ANCHORAGE REGULATIONS Special Anchorage Areas § 110.111 Marina del Rey Harbor, Calif. An area...

  4. DIGITAL IMAGE ANALYSIS OF ZOSTERA MARINA LEAF INJURY

    EPA Science Inventory

    Current methods for assessing leaf injury in Zostera marina (eelgrass) utilize subjective indexes for desiccation injury and wasting disease. Because of the subjective nature of these measures, they are inherently imprecise making them difficult to use in quantifying complex leaf...

  5. 77 FR 21868 - Safety Zone; Marina Salvage, Bellingham Bay, Bellingham, WA

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-04-12

    ... SECURITY Coast Guard 33 CFR Part 165 RIN 1625-AA00 Safety Zone; Marina Salvage, Bellingham Bay, Bellingham... safety zone in and around the Squalicum Harbor Marina, located in Bellingham, WA. This action is... by a marina fire, which produced sunken vessels, and requires emergency salvage operations. Under 5...

  6. Belliella marina sp. nov., isolated from seawater.

    PubMed

    Song, Lei; Liu, Hongcan; Wang, Jian; Huang, Ying; Dai, Xin; Han, Xiqiu; Zhou, Yuguang

    2015-12-01

    Gram-stain-negative, rod-shaped bacterium, strain SW112T, was isolated from a seawater sample collected from the Indian Ocean. The strain was strictly aerobic and catalase- and oxidase-positive. Strain SW112T grew at 4-42 °C (optimum 30 °C), at pH 5.5-9.5 (optimum pH 7.5) and in the presence of 0-9.0 % (w/v) NaCl (optimum 2.0-3.0 %). The predominant cellular fatty acids were iso-C15 : 0 (29.7 %), iso-C17 : 03-OH (14.3 %) and summed feature 3 (comprising C16 : 1ω7c and/or C16 : 1ω6c, 15.1 %). The major menaquinone was menaquinone-7 and the major polar lipid was phosphatidylethanolamine. The genomic DNA G+C content of strain SW112T was 39 mol%. Phylogenetic analyses based on 16S rRNA gene sequences revealed that strain SW112T was related to members of the genus Belliella, showing the highest similarity with Belliella aquatica TS-T86T and Belliella baltica DSM 15883T (96.5 % and 96.4 %sequence similarity, respectively). On the basis of phylogenetic inference and phenotypic characteristics, it is proposed that strain SW112T represents a novel species of the genus Belliella, for which the name Belliella marina sp. nov. is proposed. The type strain is SW112T(=CGMCC 1.15180T=KCTC 33694T). PMID:26346194

  7. Polynuclear aromatic hydrocarbons in oyster tissue around three coastal marinas

    SciTech Connect

    Marcus, J.M.; Stokes, T.P.

    1985-12-01

    Marinas present the potential for introduction of various pollutants into the surrounding waters such as coliform bacteria, primary pathogens, heavy metals, and petroleum hydrocarbons. Little data have been presented specifically addressing the effects of recreational marinas on petroleum hydrocarbon levels or, for that matter, other constituent levels in oysters near those marinas. In order to obtain such data, a comprehensive assessment of water and oyster quality around three coastal marinas was conducted by the South Carolina Department of Health and Environmental control (SCDHEC) during 1983. Polynuclear aromatic hydrocarbons (PAH) were selected as the petroleum hydrocarbon fraction of interest since they are mainly of pyrogenic origin; have been shown to be the most toxic/carcinogenic fraction of oil; have been shown to affect the respiration and heart rates of mussels; and have been shown to be linked to neoplasia in clams and proliferative disorders in mussels. C. virginica was chosen as the mollusc of interest because of its widespread distribution in the estuaries of South Carolina, its importance as an economic and recreational resource, and its suitability as a sentinel organism for monitoring coastal pollution.

  8. TOTAL AND BIOAVAILABLE METALS AT MARINA SEDIMENTS IN LAKE TEXOMA

    EPA Science Inventory

    Total and bioavailable metals in sediments were measured at marina areas in Lake Texoma during the fall of 2001. The metals most often found in the highest concentrations in sediments were Ca (56811 mg/kg) and Al (31095 mg/kg), followed by Fe (19393 mg/kg), K (6089 mg/kg), and Mg...

  9. Photoresponse in the heterotrophic marine dinoflagellate Oxyrrhis marina.

    PubMed

    Hartz, Aaron J; Sherr, Barry F; Sherr, Evelyn B

    2011-01-01

    Expressed rhodopsins were detected by proteomic analysis in an investigation of potential signal receptors in the cell membrane of the marine heterotrophic dinoflagellate Oxyrrhis marina (CCMP604). We inferred these to be sensory rhodopsins, a type of G-protein-coupled receptor trans-membrane signaling molecule. Because phototactic behavior based on sensory rhodopsins has been reported in other protists, we investigated the photosensory response of O. marina. This dinoflagellate exhibited strongest positive phototaxis at low levels (2-3 μE/m(2)/s) of white light when the cells were previously light adapted and well fed. Positive phototaxis was also found for blue (450 nm), green (525 nm), and red (680 nm) wavelengths. In a further test, O. marina showed significantly greater phototaxis toward concentrated algal food illuminated by blue light to stimulate red chlorophyll-a autofluorescence in the prey, compared with using bleached algae as prey. Concentration of a cytoplasmic downstream messenger molecule, cyclic adenosine monophosphate, a component of the signaling pathway of G-protein-coupled receptor molecules, rapidly increased in O. marina cells after exposure to white light. In addition, treatment with hydroxylamine, a rhodopsin signaling inhibitor, significantly decreased their phototactic response. Our results demonstrate that a heterotrophic marine dinoflagellate can orient to light based on rhodopsins present in the outer cell membrane and may be able to use photosensory response to detect algal prey based on chlorophyll autofluorescence.

  10. Testing of Zostera marina for physical properties. [Eelgrass-Zostera marina

    SciTech Connect

    Rue, M.L.

    1984-03-23

    The innovative portion of this project is the use of a floating solar drier to process eelgrass (Zostera marina) for building insulation. The use of eelgrass as an insulating material is well documented up to about 50 years ago. At that time it was dried by spreading out on the ground along the shore. This is no longer possible because of the nearly full development of the shore area and the high cost of labor for such activity. It is proposed to build a floating unit that will collect the eelgrass detritus and immediately process the material by drying using solar heat. (An unusual advantage of using a floating drier is that it has the ability to track the sun during the day with a substantial increase in available solar energy). The drier will be constructed of perforated corrugated aluminum sheets with a black absorber coating. A continuous mesh belt will transport the eelgrass through the dryer to a bailer at the far end. The dried material will be transported to shore for packaging and distribution to building material suppliers.

  11. Draft genome sequence of Shimia marina CECT 7688(T).

    PubMed

    Rodrigo-Torres, Lidia; Pujalte, María J; Arahal, David R

    2016-08-01

    Shimia marina is a member of the family Rhodobacteraceae described in 2006. Strain CL-TA03(T) (=CECT 7688(T)) was isolated from a biofilm formed on an acrylic slide submerged in surface water in a coastal fish farm in Tongyeong, Korea. Here we report the draft genome sequence and annotation of S. marina CECT 7688(T) which is composed by 4,001,860bp arranged in 45 scaffolds with a G+C content of 57.4%, 3878 protein coding genes, 40 tRNA genes, 4 rRNA genes and 1 repeat region. An overview of annotated genes revealed diverse genes encoding for exopolysaccharide and capsular biosynthesis enzymes, secondary metabolite biosynthesis enzymes, multiple antibiotic and metal resistance and the ability for degrading aromatic compounds. PMID:26852259

  12. VIEW OF TOWN CENTER, MARINA VIEW TOWERS SOUTH BUILDING (ORIGINALLY ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    VIEW OF TOWN CENTER, MARINA VIEW TOWERS SOUTH BUILDING (ORIGINALLY TOWN CENTER PLAZA WEST) AT 1000-1100 SIXTH STREET; TOWN CENTER PLAZA WEST WAS DESIGNED BY I.M. PEI & PARTNERS AND BUILT IN 1962 BY WEBB & KNAPP - Southwest Washington, Urban Renewal Area, Bounded by Independence Avenue, Washington Avenue, South Capitol Street, Canal Street, P Street, Maine Avenue & Washington Channel, Fourteenth Street, D Street, & Twelfth Street, Washington, District of Columbia, DC

  13. Eelgrass (Zostera marina L.) in the Gulf of California:.

    PubMed

    Felger, R; Moser, M B

    1973-07-27

    Discovery of Its Nutritional Value by the Seri Indians Zostera marina occurs in the northern Gulf of California. The grain of eelgrass is harvested in the spring and formed an important part of traditional Seri diet and culture. This is the only known case of a grain from the sea being used as a human food source. Eelgrass has considerable potential as a general food resource for mankind. Its cultivation would not require fresh water, pesticides, or artificial fertilizer.

  14. Phylogenetic position of Multicilia marina and the evolution of Amoebozoa.

    PubMed

    Nikolaev, Sergey I; Berney, Cédric; Petrov, Nikolai B; Mylnikov, Alexandre P; Fahrni, José F; Pawlowski, Jan

    2006-06-01

    Recent molecular phylogenetic studies have led to the erection of the phylum Amoebozoa, uniting naked and testate lobose amoebae, the mycetozoan slime moulds and amitochondriate amoeboid protists (Archamoebae). Molecular data together with ultrastructural evidence have suggested a close relationship between Mycetozoa and Archamoebae, classified together in the Conosea, which was named after the cone of microtubules that, when present, is characteristic of their kinetids. However, the relationships of conoseans to other amoebozoans remain unclear. Here, we obtained the complete small-subunit (SSU) rRNA gene sequence (2746 bp) of the enigmatic, multiflagellated protist Multicilia marina, which has formerly been classified either in a distinct phylum, Multiflagellata, or among lobose amoebae. Our study clearly shows that Multicilia marina belongs to the Amoebozoa. Phylogenetic analyses including 60 amoebozoan SSU rRNA gene sequences revealed that Multicilia marina branches at the base of the Conosea, together with another flagellated amoebozoan, Phalansterium solitarium, as well as with Gephyramoeba sp., Filamoeba nolandi and two unidentified amoebae. This is the first report showing strong support for a clade containing all flagellated amoebozoans and we discuss the position of the root of the phylum Amoebozoa in the light of this result. PMID:16738126

  15. Heavy metals in oyster tissue around three coastal marinas

    SciTech Connect

    Marcus, J.M.; Thompson, A.M.

    1986-04-01

    The past decade has presented an unprecedented period of growth and development along the coastline of South Carolina. The majority of this development has been to serve the recreation and tourism industry and, as such, has included the construction of numerous recreational marinas in the coastal waters of the State. Various plans have been presented for the siting of marinas in pristine estuarine waters. This has raised much concern due to the possible impacts of such development on the plentiful oyster resource found in those waters. Marinas present the potential for the introduction of pollutants such as heavy metals into the surrounding waters. This investigation was conducted by the South Carolina Department of Health and Environmental Control (SCDHEC) during 1983, and yielded a multifaceted data base composed of physiocochemical and bacteriological analyses from water, chemical analyses from sediment and chemical/bacteriological physiological analyses from the American oyster, Crassostrea virginica (Gmelin). C. virginica was chosen as the organism of interest due to its wide distribution in the estuaries of South Carolina, its importance as an economic and recreational resource and its suitability as a sentinel organism for monitoring coastal pollution.

  16. Fragility of Floating Docks for Small Craft Marinas

    NASA Astrophysics Data System (ADS)

    Keen, A.; Eskijian, M.; Lynett, P. J.; Ayca, A.

    2015-12-01

    Because of the damage resulting from the 2010 Chile and 2011 Japanese tele-tsunamis, damage to the small craft marinas in California has become an important concern. This paper will explain the methodology and results used to simulate the demand and also the structural capacity of the floating dock system, composed of floating docks, fingers and moored vessels during tsunami events. The intent is to develop a predictive tool to understand the vulnerability of California's small craft harbors to tsunami events. To validate the methodology, the probabilistic model will be applied to Santa Cruz Harbor. Maps of maximum velocity and mean current direction from the 2011 Japan tsunami have been developed using a numerical model. Cleat and pile guide locations will be recorded and georeferenced from aerial images before the event. The fragility curves for each dock/finger system will be compared with damage reports and aerial images from just after the tsunami event. A discussion of how the fragility curves compare with the damage reports will be included. It is anticipated that these curves will be useful to marina operators to use as a tool to determine where rehabilitation might be necessary to mitigate some of the damage from the next event. Conclusions will focus on how results can be used by marina operators to reduce harbor vulnerability to tsunamis.

  17. Phylogenetic position of Multicilia marina and the evolution of Amoebozoa.

    PubMed

    Nikolaev, Sergey I; Berney, Cédric; Petrov, Nikolai B; Mylnikov, Alexandre P; Fahrni, José F; Pawlowski, Jan

    2006-06-01

    Recent molecular phylogenetic studies have led to the erection of the phylum Amoebozoa, uniting naked and testate lobose amoebae, the mycetozoan slime moulds and amitochondriate amoeboid protists (Archamoebae). Molecular data together with ultrastructural evidence have suggested a close relationship between Mycetozoa and Archamoebae, classified together in the Conosea, which was named after the cone of microtubules that, when present, is characteristic of their kinetids. However, the relationships of conoseans to other amoebozoans remain unclear. Here, we obtained the complete small-subunit (SSU) rRNA gene sequence (2746 bp) of the enigmatic, multiflagellated protist Multicilia marina, which has formerly been classified either in a distinct phylum, Multiflagellata, or among lobose amoebae. Our study clearly shows that Multicilia marina belongs to the Amoebozoa. Phylogenetic analyses including 60 amoebozoan SSU rRNA gene sequences revealed that Multicilia marina branches at the base of the Conosea, together with another flagellated amoebozoan, Phalansterium solitarium, as well as with Gephyramoeba sp., Filamoeba nolandi and two unidentified amoebae. This is the first report showing strong support for a clade containing all flagellated amoebozoans and we discuss the position of the root of the phylum Amoebozoa in the light of this result.

  18. Development of approaches to predict the distribution of Zostera marina and Z. japonica in Pacific Northwest estuaries

    EPA Science Inventory

    The dominant species of submerged aquatic vegetation (SAV) in Pacific Northwest (PNW) estuaries is the intertidal and shallow subtidal seagrass, Zostera marina. Beds of Z. marina constitute a critical habitat, including providing habitat for juvenile salmon. Additionally, the n...

  19. 78 FR 29022 - Safety Zone; Fourth of July Fireworks, Berkeley Marina, Berkeley, CA

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-05-17

    ... SECURITY Coast Guard 33 CFR Part 165 Safety Zone; Fourth of July Fireworks, Berkeley Marina, Berkeley, CA... enforce the safety zone for the Berkeley Marina Fourth of July Fireworks display in the Captain of the... necessary to protect life and property of the maritime public from the hazards associated with the...

  20. 77 FR 37604 - Safety Zone; Fourth of July Fireworks, Berkeley Marina, Berkeley, CA

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-06-22

    ... SECURITY Coast Guard 33 CFR Part 165 Safety Zone; Fourth of July Fireworks, Berkeley Marina, Berkeley, CA... enforce the safety zone for the Berkeley Marina Fourth of July Fireworks display in the Captain of the... necessary to protect life and property of the maritime public from the hazards associated with the...

  1. 18 CFR 1304.403 - Marina sewage pump-out stations and holding tanks.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 18 Conservation of Power and Water Resources 2 2010-04-01 2010-04-01 false Marina sewage pump-out stations and holding tanks. 1304.403 Section 1304.403 Conservation of Power and Water Resources TENNESSEE... OTHER ALTERATIONS Miscellaneous § 1304.403 Marina sewage pump-out stations and holding tanks. All...

  2. 18 CFR 1304.403 - Marina sewage pump-out stations and holding tanks.

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... 18 Conservation of Power and Water Resources 2 2011-04-01 2011-04-01 false Marina sewage pump-out stations and holding tanks. 1304.403 Section 1304.403 Conservation of Power and Water Resources TENNESSEE... OTHER ALTERATIONS Miscellaneous § 1304.403 Marina sewage pump-out stations and holding tanks. All...

  3. 75 FR 1110 - Culturally Significant Objects Imported for Exhibition Determinations: “Marina Abramovic: The...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-01-08

    ... Culturally Significant Objects Imported for Exhibition Determinations: ``Marina Abramovic: The Artist Is Present'' SUMMARY: Notice is hereby given of the following determinations: Pursuant to the authority... hereby determine that the objects to be included in the exhibition ``Marina Abramovic: The Artist...

  4. The protozoa dinoflagellate Oxyrrhis marina contains selenoproteins and the relevant translation apparatus.

    PubMed

    Osaka, Takashi; Beika, Asa; Hattori, Asuka; Kohno, Yoshinori; Kato, Koichi H; Mizutani, Takaharu

    2003-01-01

    In the phylogenetic tree, selenoproteins and the corresponding translation machinery are found in Archaea, Eubacteria, and animals, but not in fungi and higher plants. As very little is known about Protozoa, we searched for the presence of selenoproteins in the primitive dinoflagellate Oxyrrhis marina, belonging to the Protoctista kingdom. Four selenoproteins could be obtained from O. marina cells cultured in the presence of 75Se. Using O. marina or bovine liver cytosolic extracts, we could serylate and selenylate in vitro total O. marina tRNAs. Moreover, the existence of a tRNA(Sec) could be deduced from in vivo experiments. Lastly, an anti-serum against the specialized mammalian translation elongation factor mSelB reacted with a protein of 48-kDa molecular mass. Altogether, our data showed that O. marina contains selenoproteins and suggests that the corresponding translation machinery is related to that found in animals.

  5. The protozoa dinoflagellate Oxyrrhis marina contains selenoproteins and the relevant translation apparatus.

    PubMed

    Osaka, Takashi; Beika, Asa; Hattori, Asuka; Kohno, Yoshinori; Kato, Koichi H; Mizutani, Takaharu

    2003-01-01

    In the phylogenetic tree, selenoproteins and the corresponding translation machinery are found in Archaea, Eubacteria, and animals, but not in fungi and higher plants. As very little is known about Protozoa, we searched for the presence of selenoproteins in the primitive dinoflagellate Oxyrrhis marina, belonging to the Protoctista kingdom. Four selenoproteins could be obtained from O. marina cells cultured in the presence of 75Se. Using O. marina or bovine liver cytosolic extracts, we could serylate and selenylate in vitro total O. marina tRNAs. Moreover, the existence of a tRNA(Sec) could be deduced from in vivo experiments. Lastly, an anti-serum against the specialized mammalian translation elongation factor mSelB reacted with a protein of 48-kDa molecular mass. Altogether, our data showed that O. marina contains selenoproteins and suggests that the corresponding translation machinery is related to that found in animals. PMID:12480549

  6. Plastid-derived genes in the nonphotosynthetic alveolate Oxyrrhis marina.

    PubMed

    Slamovits, Claudio H; Keeling, Patrick J

    2008-07-01

    Reconstructing the history of plastid acquisition and loss in the alveolate protists is a difficult problem because our knowledge of the distribution of plastids in extant lineages is incomplete due to the possible presence of cryptic, nonphotosynthetic plastids in several lineages. The discovery of the apicoplast in apicomplexan parasites has drawn attention to this problem and, more specifically, to the question of whether many other nonphotosynthetic lineages also contain cryptic plastids or are derived from plastid-containing ancestors. Oxyrrhis marina is one such organism: It is a heterotrophic, early-branching member of the dinoflagellate lineage for which there is no evidence of a plastid. To investigate the possibility that O. marina is derived from a photosynthetic ancestor, we have generated and analyzed a large-scale EST database and searched for evidence of plastid-derived genes. Here, we describe 8 genes whose phylogeny shows them to be derived from plastid-targeted homologues. These genes encode proteins from several pathways known to be localized in the plastids of other algae, including synthesis of tetrapyrroles, isoprenoids, and amino acids, as well as carbon metabolism and oxygen detoxification. The 5' end of 5 cDNAs were also characterized using cap-dependent or spliced leader-mediated reverse transcriptase-polymerase chain reaction, revealing that at least 4 of these genes have retained leaders that are similar in nature to the plastid-targeting signals of other secondary plastids, suggesting that these proteins may be targeted to a cryptic organelle. At least 2 genes do not encode such leaders, and their products may presently function in the cytosol. Altogether, the presence of plastid-derived genes in O. marina shows that its ancestors contained a plastid, and the pathways represented by the genes and presence of targeting signals on at least some of the genes further suggests that a relict organelle may still exist to fulfill plastid

  7. Sulfide Intrusion and Detoxification in the Seagrass Zostera marina

    PubMed Central

    Hasler-Sheetal, Harald; Holmer, Marianne

    2015-01-01

    Gaseous sulfide intrusion into seagrasses growing in sulfidic sediments causes little or no harm to the plant, indicating the presence of an unknown sulfide tolerance or detoxification mechanism. We assessed such mechanism in the seagrass Zostera marina in the laboratory and in the field with scanning electron microscopy coupled to energy dispersive X-ray spectroscopy, chromatographic and spectrophotometric methods, and stable isotope tracing coupled with a mass balance of sulfur compounds. We found that Z. marina detoxified gaseous sediment-derived sulfide through incorporation and that most of the detoxification occurred in underground tissues, where sulfide intrusion was greatest. Elemental sulfur was a major detoxification compound, precipitating on the inner wall of the aerenchyma of underground tissues. Sulfide was metabolized into thiols and entered the plant sulfur metabolism as well as being stored as sulfate throughout the plant. We conclude that avoidance of sulfide exposure by reoxidation of sulfide in the rhizosphere or aerenchyma and tolerance of sulfide intrusion by incorporation of sulfur in the plant are likely major survival strategies of seagrasses in sulfidic sediments. PMID:26030258

  8. Reconstructing Contaminant Deposition in a San Francisco Bay Marina, California

    PubMed Central

    Love, Adam H.; Esser, Bradley K.; Hunt, James R.

    2010-01-01

    Two sediment cores were collected from a marina in the San Francisco Bay to characterize historical sediment contamination resulting from the direct discharge of industrial wastewater from Naval Air Station Alameda. Depth profiles of trace metals, petroleum hydrocarbons, and radionuclides were determined with a 12-cm spacing down to a depth of 120 cm. The chronology of sediment accumulation is established by depth profiles of sedimentary time markers in conjunction with information on site history. The traditional approach of determining sediment accumulation rates by measuring atmospheric 210Pb deposition was obscured by a larger source of 210Pb in the sediments from the decay of anthropogenic 226Ra, likely from luminescent paints used at this facility and released to the marina. The sedimentation rates inferred from the data indicate that the greatest amount of contamination by trace metals and petroleum hydrocarbons took place between 1940 and 1960. In addition, anthropogenic 226Ra activities are positively correlated with some of the contaminants in the sediments, allowing the wastewater discharged from the facility to be distinguished from baywide contamination. In locations such as this, where there is a complex history of contaminant deposition, a source-specific tracer may be the only feasible method of attributing historical contamination to a point source. PMID:20333267

  9. Influence of neighboring plants on shading stress resistance and recovery of eelgrass, Zostera marina L.

    PubMed

    Gustafsson, Camilla; Boström, Christoffer

    2013-01-01

    Stressful environments may enhance the occurrence of facilitative interspecific interactions between plants. In several regions, Zostera marina occurs in mixed assemblages. However, the potential effects of plant diversity on stress responses and stability properties of Z. marina are poorly understood. We investigated the resistance and recovery of Z. marina subjected to shading (1 mo) in a field experiment lasting 2.5 mo. We shaded Z. marina planted in mono- and polycultures (Potamogeton perfoliatus, P. pectinatus, P. filiformis) in a factorial design (Shading×Richness) at 2 m depth. We estimated the resistance and recovery of Z. marina by measuring four response variables. Polyculture Z. marina lost proportionally less biomass than monocultures, thus having a greater resistance to shading. In contrast, after a 1 mo recovery period, monocultures exhibited higher biomass gain, and a faster recovery than polycultures. Our results suggest that plant species richness enhances the resistance of Z. marina through facilitative mechanisms, while the faster recovery in monocultures is possibly due to interspecific competition. Our results highlight the need of a much better understanding of the effects of interspecific interactions on ecosystem processes in mixed seagrass meadows, and the preservation of diverse plant assemblages to maintain ecosystem functioning.

  10. Influence of Neighboring Plants on Shading Stress Resistance and Recovery of Eelgrass, Zostera marina L

    PubMed Central

    Gustafsson, Camilla; Boström, Christoffer

    2013-01-01

    Stressful environments may enhance the occurrence of facilitative interspecific interactions between plants. In several regions, Zostera marina occurs in mixed assemblages. However, the potential effects of plant diversity on stress responses and stability properties of Z. marina are poorly understood. We investigated the resistance and recovery of Z. marina subjected to shading (1 mo) in a field experiment lasting 2.5 mo. We shaded Z. marina planted in mono- and polycultures (Potamogeton perfoliatus, P. pectinatus, P. filiformis) in a factorial design (Shading×Richness) at 2 m depth. We estimated the resistance and recovery of Z. marina by measuring four response variables. Polyculture Z. marina lost proportionally less biomass than monocultures, thus having a greater resistance to shading. In contrast, after a 1 mo recovery period, monocultures exhibited higher biomass gain, and a faster recovery than polycultures. Our results suggest that plant species richness enhances the resistance of Z. marina through facilitative mechanisms, while the faster recovery in monocultures is possibly due to interspecific competition. Our results highlight the need of a much better understanding of the effects of interspecific interactions on ecosystem processes in mixed seagrass meadows, and the preservation of diverse plant assemblages to maintain ecosystem functioning. PMID:23717532

  11. Patterns of genetic diversity in the marine heterotrophic flagellate Oxyrrhis marina (Alveolata: Dinophyceae).

    PubMed

    Lowe, Chris D; Montagnes, David J S; Martin, Laura E; Watts, Phillip C

    2010-04-01

    Oxyrrhis marina is an important model in ecological studies of free-living protists. Despite this, O. marina has rarely been studied in the environment and no explicit distributional studies exist. Further, phylogenetic data for a small number of isolates indicate that O. marina constitutes two divergent lineages. Here, we quantify phylogenetic variation between 58 globally distributed O. marina isolates using 5.8S--internal transcribed spacer 1 and 2 rDNA (5.8S ITS) and cytochrome c oxidase I (COI) partial sequences. 5.8S ITS and COI phylogenies both partitioned O. marina into four clades, which formed two lineages; mean sequence identity for 5.8S ITS and COI respectively was approximately 40 and 90% between these two lineages. Sequence identities for 5.8S ITS/ COI between clades within lineages were 66.3/99.4% (lineage 1: clade 1 vs 2) and 42.3/99.1% (lineage 2: clade 3 vs 4). rDNA mutation rates in O. marina appear to be abnormally high and were not interpreted in a species delineation context. Based on variation in COI sequence and comparisons with other protists, we suggest that O. marina lineages may constitute two species. In a geographic context, evidence of spatial restriction but also extensive overlap between O. marina clades occurred. Further, clade abundances varied considerably: clades 1 and 2 (belonging to one lineage) were abundant and widespread; in contrast, clades 3 and 4 (belonging to the second lineage) were rare and spatially restricted (occurring only in the Mediterranean or in culture collection). There is need for further phylogenetic and taxonomic studies to assess species delineation in O. marina, and for the application of high resolution genetic markers to resolve processes driving genetic diversity in this important model organism.

  12. Hydroacoustic basis for detection and characterization of eelgrass (Zostera marina)

    SciTech Connect

    Sabol, B.; McCarthy, E.; Rocha, K.

    1997-06-01

    Understanding the distribution and density of seagrasses is important for a variety of environmental applications. Physical techniques for detection and characterization are labor and cost intensive and provide little insight into spatial distribution. optical-based techniques are limited by water clarity - frequently resulting in systematic underestimation of the extent of seagrasses. Active hydroacoustic techniques have shown the ability to detect seagrasses but the phenomenology behind detection is poorly understood. Laboratory and in-situ hydroacoustic measurements are presented for eelgrass (Zostera marina), a common seagrass in the United States. Based on these data, hydroacoustic approaches for wide area detection and mapping are discussed and several are demonstrated within areas of established eelgrass beds in Narragansett Bay, Rhode Island.

  13. Genetic relatedness influences plant biomass accumulation in eelgrass (Zostera marina).

    PubMed

    Stachowicz, John J; Kamel, Stephanie J; Hughes, A Randall; Grosberg, Richard K

    2013-05-01

    In multispecies assemblages, phylogenetic relatedness often predicts total community biomass. In assemblages dominated by a single species, increasing the number of genotypes increases total production, but the role of genetic relatedness is unknown. We used data from three published experiments and a field survey of eelgrass (Zostera marina), a habitat-forming marine angiosperm, to examine the strength and direction of the relationship between genetic relatedness and plant biomass. The genetic relatedness of an assemblage strongly predicted its biomass, more so than the number of genotypes. However, contrary to the pattern observed in multispecies assemblages, maximum biomass occurred in assemblages of more closely related individuals. The mechanisms underlying this pattern remain unclear; however, our data support a role for both trait differentiation and cooperation among kin. Many habitat-forming species interact intensely with conspecifics of varying relatedness; thus, genetic relatedness could influence the functioning of ecosystems dominated by such species.

  14. Characterization of single nucleotide polymorphism markers for eelgrass (Zostera marina).

    PubMed

    Ferber, Steven; Reusch, Thorsten B H; Stam, Wytze T; Olsen, Jeanine L

    2008-11-01

    We characterized 37 single nucleotide polymorphism (SNP) makers for eelgrass Zostera marina. SNP markers were developed using existing EST (expressed sequence tag)-libraries to locate polymorphic loci and develop primers from the functional expressed genes that are deposited in The ZOSTERA database (V1.2.1). SNP loci were genotyped using a single-base-extension approach which facilitated high-throughput genotyping with minimal optimization time. These markers show a wide range of variability among 25 eelgrass populations and will be useful for population genetic studies including evaluation of population structure, historical demography, and phylogeography. Potential applications include haplotype inference of physically linked SNPs and identification of genes under selection for temperature and desiccation stress.

  15. The bathymetric distribution of intertidal eelgrass Zostera marina L. in three coastal estuaries of Oregon

    EPA Science Inventory

    Distributions of native eelgrass Zostera marina L. within the intertidal and shallow subtidal zones of three Oregon coastal estuaries (Tillamook, Yaquina, and Alsea) were determined by digital classification of aerial color infrared (CIR) orthophotographs. Stratified random surv...

  16. Distribution of intertidal eelgrass (Zostera marina L.) with bathymetry in three Pacific Northwest estuaries

    EPA Science Inventory

    Distributions of native intertidal eelgrass (Zostera marina L.) and non-vegetated substrates in three coastal estuaries of the Pacific Northwest (PNW) were determined using color infrared (CIR) aerial orthophotography during daylight low tides. Comparison of the digital classif...

  17. 3. SOUTHEAST APPROACHELEVATION. Puente de la Marina, San LorenzoFlorida ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    3. SOUTHEAST APPROACH-ELEVATION. - Puente de la Marina, San Lorenzo-Florida & Cerro Gordo Neighborhoods, spanning Rio Grande de Loiza River at Narciso Varona-Suarez Street, San Lorenzo, San Lorenzo Municipio, PR

  18. 4. NORTHWEST APPROACHELEVATION. Puente de la Marina, San LorenzoFlorida ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    4. NORTHWEST APPROACH-ELEVATION. - Puente de la Marina, San Lorenzo-Florida & Cerro Gordo Neighborhoods, spanning Rio Grande de Loiza River at Narciso Varona-Suarez Street, San Lorenzo, San Lorenzo Municipio, PR

  19. 5. NORTHEAST SIDEELEVATION. Puente de la Marina, San LorenzoFlorida ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    5. NORTHEAST SIDE-ELEVATION. - Puente de la Marina, San Lorenzo-Florida & Cerro Gordo Neighborhoods, spanning Rio Grande de Loiza River at Narciso Varona-Suarez Street, San Lorenzo, San Lorenzo Municipio, PR

  20. DIGESTIVE BIOAVAILABILITY TO A DEPOSIT FEDDER (ARENICOLA MARINA) OF POLYCYCLIC AROMATIC HYDROCARBONS ASSOCIATED WITH ANTHRPOGENIC PARTICLES

    EPA Science Inventory

    Marine sediments around urban areas serve as catch basins for anthropogenic particles containing polycyclic aromatic hydrocarbons (PAHs). Using incubations with gut fluids extracted from a deposit-feeding polychaete (Arenicola marina), we determined the digestive bioavailability ...

  1. Effect of Temperature and Nutrient Manipulations on eelgrass Zostera marina L. from the Pacific Northwest, USA

    EPA Science Inventory

    Global climate change will have a large impact on the three predominate drivers of estuarine seagrass productivity, temperature, light and nutrients. I experimentally evaluate the response of Pacific Northwest Z. marina to interactive effects of temperature and nutrient conditio...

  2. Estuarine intertidal sediment temperature variability in Zoster marina and Z. japonica habitats in Yaquina Bay, Oregon

    EPA Science Inventory

    Physical characterization of intertidal estuarine plant habitats over time may reveal distribution-limiting thresholds. Temperature data from loggers embedded in sediment in transects crossing Zostera marina and Z. japonica habitats in lower Yaquina Bay, Oregon display signific...

  3. ZOSTERA MARINA IN A PACIFIC NORTHWEST ESTUARY: WHAT FACTORS CONTROL INTERTIDAL DISTRIBUTION?

    EPA Science Inventory

    The impact of four factors (desiccation, macroalgae, erosion, light) on the distribution of Zostera marina was examined across tidal and bathymetric slope gradients. Data detailing seagrass characteristics, including 1 production, macroalgae biomass and sediment characteristics ...

  4. Recolonization of intertidal Zostera marina L. (eelgrass) following experimental shoot removal

    EPA Science Inventory

    The recovery of eelgrass (Zostera marina) from physical disturbances is understudied and no attention has been given to the likely differences in damage recovery rates between the continuous lower intertidal perennial meadows and higher intertidal eelgrass patches. In the present...

  5. Toad Intoxication in the Dog by Rhinella marina : The Clinical Syndrome and Current Treatment Recommendations.

    PubMed

    Johnnides, Stephanie; Green, Tiffany; Eubig, Paul

    2016-01-01

    Oral exposure to the secretions of Rhinella marina (formerly Bufo marinus ) can carry a high fatality rate without early and appropriate treatment. In dogs, the clinical syndrome, which is evident almost immediately, manifests in profuse ptyalism along with gastrointestinal, respiratory, and neurologic signs. Severe cardiac arrhythmias develop less frequently. This review will cover the history, toxicology, and clinical syndrome of Rhinella marina intoxication, and will discuss the recommended therapies for stabilization. PMID:27259028

  6. Complete genome of Cobetia marina JCM 21022T and phylogenomic analysis of the family Halomonadaceae

    NASA Astrophysics Data System (ADS)

    Tang, Xianghai; Xu, Kuipeng; Han, Xiaojuan; Mo, Zhaolan; Mao, Yunxiang

    2016-09-01

    Cobetia marina is a model proteobacteria in researches on marine biofouling. Its taxonomic nomenclature has been revised many times over the past few decades. To better understand the role of the surface-associated lifestyle of C. marina and the phylogeny of the family Halomonadaceae, we sequenced the entire genome of C. marina JCM 21022T using single molecule real-time sequencing technology (SMRT) and performed comparative genomics and phylogenomics analyses. The circular chromosome was 4 176 300 bp with an average GC content of 62.44% and contained 3 611 predicted coding sequences, 72 tRNA genes, and 21 rRNA genes. The C. marina JCM 21022T genome contained a set of crucial genes involved in surface colonization processes. The comparative genome analysis indicated the significant diff erences between C. marina JCM 21022T and Cobetia amphilecti KMM 296 (formerly named C. marina KMM 296) resulted from sequence insertions or deletions and chromosomal recombination. Despite these diff erences, pan and core genome analysis showed similar gene functions between the two strains. The phylogenomic study of the family Halomonadaceae is reported here for the first time. We found that the relationships were well resolved among every genera tested, including Chromohalobacter, Halomonas, Cobetia, Kushneria, Zymobacter, and Halotalea.

  7. Current European Labyrinthula zosterae Are Not Virulent and Modulate Seagrass (Zostera marina) Defense Gene Expression

    PubMed Central

    Brakel, Janina; Werner, Franziska Julie; Tams, Verena; Reusch, Thorsten B. H.; Bockelmann, Anna-Christina

    2014-01-01

    Pro- and eukaryotic microbes associated with multi-cellular organisms are receiving increasing attention as a driving factor in ecosystems. Endophytes in plants can change host performance by altering nutrient uptake, secondary metabolite production or defense mechanisms. Recent studies detected widespread prevalence of Labyrinthula zosterae in European Zostera marina meadows, a protist that allegedly caused a massive amphi-Atlantic seagrass die-off event in the 1930's, while showing only limited virulence today. As a limiting factor for pathogenicity, we investigated genotype×genotype interactions of host and pathogen from different regions (10–100 km-scale) through reciprocal infection. Although the endophyte rapidly infected Z. marina, we found little evidence that Z. marina was negatively impacted by L. zosterae. Instead Z. marina showed enhanced leaf growth and kept endophyte abundance low. Moreover, we found almost no interaction of protist×eelgrass-origin on different parameters of L. zosterae virulence/Z. marina performance, and also no increase in mortality after experimental infection. In a target gene approach, we identified a significant down-regulation in the expression of 6/11 genes from the defense cascade of Z. marina after real-time quantitative PCR, revealing strong immune modulation of the host's defense by a potential parasite for the first time in a marine plant. Nevertheless, one gene involved in phenol synthesis was strongly up-regulated, indicating that Z. marina plants were probably able to control the level of infection. There was no change in expression in a general stress indicator gene (HSP70). Mean L. zosterae abundances decreased below 10% after 16 days of experimental runtime. We conclude that under non-stress conditions L. zosterae infection in the study region is not associated with substantial virulence. PMID:24691450

  8. Current European Labyrinthula zosterae are not virulent and modulate seagrass (Zostera marina) defense gene expression.

    PubMed

    Brakel, Janina; Werner, Franziska Julie; Tams, Verena; Reusch, Thorsten B H; Bockelmann, Anna-Christina

    2014-01-01

    Pro- and eukaryotic microbes associated with multi-cellular organisms are receiving increasing attention as a driving factor in ecosystems. Endophytes in plants can change host performance by altering nutrient uptake, secondary metabolite production or defense mechanisms. Recent studies detected widespread prevalence of Labyrinthula zosterae in European Zostera marina meadows, a protist that allegedly caused a massive amphi-Atlantic seagrass die-off event in the 1930's, while showing only limited virulence today. As a limiting factor for pathogenicity, we investigated genotype × genotype interactions of host and pathogen from different regions (10-100 km-scale) through reciprocal infection. Although the endophyte rapidly infected Z. marina, we found little evidence that Z. marina was negatively impacted by L. zosterae. Instead Z. marina showed enhanced leaf growth and kept endophyte abundance low. Moreover, we found almost no interaction of protist × eelgrass-origin on different parameters of L. zosterae virulence/Z. marina performance, and also no increase in mortality after experimental infection. In a target gene approach, we identified a significant down-regulation in the expression of 6/11 genes from the defense cascade of Z. marina after real-time quantitative PCR, revealing strong immune modulation of the host's defense by a potential parasite for the first time in a marine plant. Nevertheless, one gene involved in phenol synthesis was strongly up-regulated, indicating that Z. marina plants were probably able to control the level of infection. There was no change in expression in a general stress indicator gene (HSP70). Mean L. zosterae abundances decreased below 10% after 16 days of experimental runtime. We conclude that under non-stress conditions L. zosterae infection in the study region is not associated with substantial virulence.

  9. Cellulomonas marina sp. nov., isolated from deep-sea water.

    PubMed

    Zhang, Limin; Xi, Lijun; Qiu, Danheng; Song, Lei; Dai, Xin; Ruan, Jisheng; Huang, Ying

    2013-08-01

    A bacterial strain FXJ8.089(T) was isolated from deep-sea water collected from the southwest Indian Ocean (49° 39' E 37° 47' S) at a depth of 2800 m, and its taxonomic position was investigated by a polyphasic approach. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain FXJ8.089(T) belonged to the genus Cellulomonas and had the highest similarities with Cellulomonas oligotrophica (96.9 %) and Cellulomonas aerilata (96.6 %). It contained MK-9(H4) as the predominant menaquinone. The polar lipids were diphosphatidylglycerol and phosphatidylinositol mannosides. The cell-wall peptidoglycan type was A4β with an interpeptide bridge L-Orn-D-Glu. The cell-wall sugars were glucose, mannose and ribose. The DNA G+C content was 70.3 mol%. The strain also showed a number of physiological and biochemical characteristics that were distinct from the closely related species. Based on phenotypic and genotypic data, strain FXJ8.089(T) (= CGMCC 4.6945(T) = DSM 24960(T)) represents a novel species of the genus Cellulomonas, for which the name Cellulomonas marina sp. nov. is proposed.

  10. Eelgrass (Zostera marina) Food Web Structure in Different Environmental Settings.

    PubMed

    Thormar, Jonas; Hasler-Sheetal, Harald; Baden, Susanne; Boström, Christoffer; Clausen, Kevin Kuhlmann; Krause-Jensen, Dorte; Olesen, Birgit; Rasmussen, Jonas Ribergaard; Svensson, Carl Johan; Holmer, Marianne

    2016-01-01

    This study compares the structure of eelgrass (Zostera marina L.) meadows and associated food webs in two eelgrass habitats in Denmark, differing in exposure, connection to the open sea, nutrient enrichment and water transparency. Meadow structure strongly reflected the environmental conditions in each habitat. The eutrophicated, protected site had higher biomass of filamentous algae, lower eelgrass biomass and shoot density, longer and narrower leaves, and higher above to below ground biomass ratio compared to the less nutrient-enriched and more exposed site. The faunal community composition and food web structure also differed markedly between sites with the eutrophicated, enclosed site having higher biomass of consumers and less complex food web. These relationships resulted in a column shaped biomass distribution of the consumers at the eutrophicated site whereas the less nutrient-rich site showed a pyramidal biomass distribution of consumers coupled with a more diverse consumer community. The differences in meadow and food web structure of the two seagrass habitats, suggest how physical setting may shape ecosystem response and resilience to anthropogenic pressure. We encourage larger, replicated studies to further disentangle the effects of different environmental variables on seagrass food web structure. PMID:26752412

  11. Mobile epifauna on Zostera marina, and infauna of its inflorescences

    NASA Astrophysics Data System (ADS)

    Hellwig-Armonies, Monika

    1988-06-01

    The faunal colonization of the leaves and inflorescences of intertidal Zostera marina L. and of the ambient water has been studied at the Island of Sylt (North Sea). The abundance of the snail Littorina littorea L. and the isopod Jaera albifrons Leach correlates significantly with leaf surface area. This is not the case with the abundance of meiofaunal Plathelminthes, Nematoda, Copepoda, and Polychaeta. However, they increase significantly with the numbers of generative shoots in the sampled seagrass bunches. Members of these taxa inhabit the Zostera inflorescences, and average abundance increases with the degree of decay of inflorescences. This temporary microhabitat presumably offers food and shelter. Copepods and ostracods dominate in the ambient water. Planktonic calanoid copepods correlate with the amount of sampled seawater, while Ostracoda correlate with the amount of resuspended detritus suggesting that they were resuspended themselves. The study shows that some meiofaunal taxa can rapidly exploit a short-lived habitat such as the Zostera inflorescences. Juvenile polychaetes use inflorescences as a nursery.

  12. Eelgrass (Zostera marina) Food Web Structure in Different Environmental Settings.

    PubMed

    Thormar, Jonas; Hasler-Sheetal, Harald; Baden, Susanne; Boström, Christoffer; Clausen, Kevin Kuhlmann; Krause-Jensen, Dorte; Olesen, Birgit; Rasmussen, Jonas Ribergaard; Svensson, Carl Johan; Holmer, Marianne

    2016-01-01

    This study compares the structure of eelgrass (Zostera marina L.) meadows and associated food webs in two eelgrass habitats in Denmark, differing in exposure, connection to the open sea, nutrient enrichment and water transparency. Meadow structure strongly reflected the environmental conditions in each habitat. The eutrophicated, protected site had higher biomass of filamentous algae, lower eelgrass biomass and shoot density, longer and narrower leaves, and higher above to below ground biomass ratio compared to the less nutrient-enriched and more exposed site. The faunal community composition and food web structure also differed markedly between sites with the eutrophicated, enclosed site having higher biomass of consumers and less complex food web. These relationships resulted in a column shaped biomass distribution of the consumers at the eutrophicated site whereas the less nutrient-rich site showed a pyramidal biomass distribution of consumers coupled with a more diverse consumer community. The differences in meadow and food web structure of the two seagrass habitats, suggest how physical setting may shape ecosystem response and resilience to anthropogenic pressure. We encourage larger, replicated studies to further disentangle the effects of different environmental variables on seagrass food web structure.

  13. Eelgrass (Zostera marina) Food Web Structure in Different Environmental Settings

    PubMed Central

    Thormar, Jonas; Hasler-Sheetal, Harald; Baden, Susanne; Boström, Christoffer; Clausen, Kevin Kuhlmann; Krause-Jensen, Dorte; Olesen, Birgit; Rasmussen, Jonas Ribergaard; Svensson, Carl Johan; Holmer, Marianne

    2016-01-01

    This study compares the structure of eelgrass (Zostera marina L.) meadows and associated food webs in two eelgrass habitats in Denmark, differing in exposure, connection to the open sea, nutrient enrichment and water transparency. Meadow structure strongly reflected the environmental conditions in each habitat. The eutrophicated, protected site had higher biomass of filamentous algae, lower eelgrass biomass and shoot density, longer and narrower leaves, and higher above to below ground biomass ratio compared to the less nutrient-enriched and more exposed site. The faunal community composition and food web structure also differed markedly between sites with the eutrophicated, enclosed site having higher biomass of consumers and less complex food web. These relationships resulted in a column shaped biomass distribution of the consumers at the eutrophicated site whereas the less nutrient-rich site showed a pyramidal biomass distribution of consumers coupled with a more diverse consumer community. The differences in meadow and food web structure of the two seagrass habitats, suggest how physical setting may shape ecosystem response and resilience to anthropogenic pressure. We encourage larger, replicated studies to further disentangle the effects of different environmental variables on seagrass food web structure. PMID:26752412

  14. INTERTIDAL SEDIMENT TEMPERATURE VARIANCE AS A POSSIBLE LIMITING FACTOR FOR EELGRASSES ZOSTERA MARINA AND ZOSTERA JAPONICA IN YAQUINA BAY, OR

    EPA Science Inventory

    The eelgrass species Zostera marina and Z. japonica co-occur in most Pacific Northwest estuaries; Z. marina is regarded as a native species, Z. japonica as non-indigenous, introduced in Yaquina Bay in approximately 1975. The mean tidal range is ~2 m, extreme ~3m. The vertical d...

  15. FACTORS CONTROLLING ZOSTERA MARINA L. GROWTH IN THE EASTERN AND WESTERN PACIFIC OCEAN: COMPARISONS BETWEEN SOUTH KOREA AND OREGON, USA

    EPA Science Inventory

    Zostera marina distribution is circum-global and tolerates a wide range of environmental conditions. Consequently, it is likely that populations have adapted to local environmental conditions of light, temperature and nutrient supply. We compared Z. marina growth dynamics over a ...

  16. Late Miocene diversification and phylogenetic relationships of the huge toads in the Rhinella marina (Linnaeus, 1758) species group (Anura: Bufonidae).

    PubMed

    Maciel, Natan Medeiros; Collevatti, Rosane Garcia; Colli, Guarino Rinaldi; Schwartz, Elisabeth Ferroni

    2010-11-01

    We investigated the phylogeny and biogeography of the Rhinella marina group, using molecular, morphological, and skin-secretion data, contributing to an understanding of Neotropical faunal diversification. The maximum-parsimony and Bayesian analyzes of the combined data recovered a monophyletic R. marina group. Molecular dating based on Bayesian inferences and fossil calibration placed the earliest phylogenetic split within the R. marina group at ∼ 10.47 MYA, in the late Miocene. Two rapid major diversifications occurred from Central Brazil, first northward (∼ 8.08 MYA) in late Miocene and later southward (∼ 5.17 MYA) in early Pliocene. These results suggest that barriers and dispersal routes created by the uplift of Brazilian Central Shield and climatic changes explain the diversification and current species distributions of the R. marina group. Dispersal-vicariance analyzes (DIVA) indicated that the two major diversifications of the R. marina group were due to vicariance, although eleven dispersals subsequently occurred. PMID:20813190

  17. There are high levels of functional and genetic diversity in Oxyrrhis marina.

    PubMed

    Lowe, Chris D; Day, Adam; Kemp, Stephen J; Montagnes, David J S

    2005-01-01

    Oxyrrhis marina, a widely distributed marine protist, is used to model heterotrophic flagellate responses in microbial food webs. Although clonal variability occurs in protists, assessments of intraspecific diversity are rare; such assessments are critical, particularly where species are used as models in ecological studies. To address the extent of intraspecific variation within O. marina, we assessed diversity among 11 strains using 5.8S rDNA and ITS sequences. The 5.8S rDNA and ITS regions revealed high divergence between strains: 63.1% between the most diverse. To compare O. marina diversity relative to other alveolates, 18S rDNA sequences for five strains were analysed with sequences from representatives of the major alveolate groups. 18S rDNA also revealed high divergence in O. marina. Additionally, consistent with phylogenies based on protein coding genes, maximum likelihood analysis indicated that O. marina was monophyletic and ancestral to the dinoflagellates. To assess ecophysiological differences, growth rates of seven O. marina strains were measured at 10 salinities (10-55 per thousand). Two salinity responses occurred: one group achieved highest growth rates at high salinities; the other grew best at low salinities. There was no clear correlation between molecular, ecophysiological, or geographical differences. However, salinity tolerance was associated with habitat type: intertidal strains grew best at high salinities; open-water strains grew best at low salinities. These data indicate the need to examine many strains of a species in both phylogenetic and ecological studies, especially where key-species are used to model ecological processes.

  18. Sexual Recruitment in Zostera marina: Progress toward a Predictive Model.

    PubMed

    Furman, Bradley T; Peterson, Bradley J

    2015-01-01

    Ecophysiological stress and physical disturbance are capable of structuring meadows through a combination of direct biomass removal and recruitment limitation; however, predicting these effects at landscape scales has rarely been successful. To model environmental influence on sexual recruitment in perennial Zostera marina, we selected a sub-tidal, light-replete study site with seasonal extremes in temperature and wave energy. During an 8-year observation period, areal coverage increased from 4.8 to 42.7%. Gains were stepwise in pattern, attributable to annual recruitment of patches followed by centrifugal growth and coalescence. Recruitment varied from 13 to 4,894 patches per year. Using a multiple linear regression approach, we examined the association between patch appearance and relative wave energy, atmospheric condition and water temperature. Two models were developed, one appropriate for the dispersal of naked seeds, and another for rafted flowers. Results indicated that both modes of sexual recruitment varied as functions of wind, temperature, rainfall and wave energy, with a regime shift in wind-wave energy corresponding to periods of rapid colonization within our site. Temporal correlations between sexual recruitment and time-lagged climatic summaries highlighted floral induction, seed bank and small patch development as periods of vulnerability. Given global losses in seagrass coverage, regions of recovery and re-colonization will become increasingly important. Lacking landscape-scale process models for seagrass recruitment, temporally explicit statistical approaches presented here could be used to forecast colonization trajectories and to provide managers with real-time estimates of future meadow performance; i.e., when to expect a good year in terms of seagrass expansion. To facilitate use as forecasting tools, we did not use statistical composites or normalized variables as our predictors. This study, therefore, represents a first step toward linking

  19. Isoflurane, sevoflurane and desflurane use in cane toads (Rhinella marina)

    PubMed Central

    Morrison, Kaleigh E.; Strahl-Heldreth, Danielle; Clark-Price, Stuart C.

    2016-01-01

    Anaesthetic chamber concentrations of isoflurane, sevoflurane and desflurane that resulted in loss of righting reflex within 15 minutes in 50 per cent of toads (Rhinella marina) exposed (ED50-LRR<15MIN) were identified. The median and range ED50-LRR<15MIN was 1.4 (0.9–1.4) per cent for isoflurane, 1.75 (1.1–1.9) per cent for sevoflurane and 4.4 (4.3–5.5) per cent for desflurane. Subsequently, toads were exposed to 1.5 times the ED50-LRR<15MIN and times to loss and return of righting reflex were identified. All toads for all anaesthetics lost righting reflex. The median and range loss of righting reflex was 4:00 (3:00–5:30) minutes for isoflurane, 4:45 (3:30–7:00) minutes for sevoflurane, and 4:15 (4:00–5:30) minutes for desflurane and was not different between anaesthetics. Time to return of righting reflex was 175 (123–211) minutes for isoflurane, 192 (116–383) minutes for sevoflurane and 74 (52–220) minutes for desflurane. Time to return of righting reflex was significantly shorter for desflurane compared with isoflurane or sevoflurane. The use of isoflurane, sevoflurane or desflurane can be used to provide immobilisation to cane toads and potentially other anurans. Induction times are likely similar when using an anaesthetic chamber to provide anaesthesia. However recovery time may take twice as long when utilising isoflurane or sevoflurane over desflurane. PMID:27651914

  20. Sexual Recruitment in Zostera marina: Progress toward a Predictive Model.

    PubMed

    Furman, Bradley T; Peterson, Bradley J

    2015-01-01

    Ecophysiological stress and physical disturbance are capable of structuring meadows through a combination of direct biomass removal and recruitment limitation; however, predicting these effects at landscape scales has rarely been successful. To model environmental influence on sexual recruitment in perennial Zostera marina, we selected a sub-tidal, light-replete study site with seasonal extremes in temperature and wave energy. During an 8-year observation period, areal coverage increased from 4.8 to 42.7%. Gains were stepwise in pattern, attributable to annual recruitment of patches followed by centrifugal growth and coalescence. Recruitment varied from 13 to 4,894 patches per year. Using a multiple linear regression approach, we examined the association between patch appearance and relative wave energy, atmospheric condition and water temperature. Two models were developed, one appropriate for the dispersal of naked seeds, and another for rafted flowers. Results indicated that both modes of sexual recruitment varied as functions of wind, temperature, rainfall and wave energy, with a regime shift in wind-wave energy corresponding to periods of rapid colonization within our site. Temporal correlations between sexual recruitment and time-lagged climatic summaries highlighted floral induction, seed bank and small patch development as periods of vulnerability. Given global losses in seagrass coverage, regions of recovery and re-colonization will become increasingly important. Lacking landscape-scale process models for seagrass recruitment, temporally explicit statistical approaches presented here could be used to forecast colonization trajectories and to provide managers with real-time estimates of future meadow performance; i.e., when to expect a good year in terms of seagrass expansion. To facilitate use as forecasting tools, we did not use statistical composites or normalized variables as our predictors. This study, therefore, represents a first step toward linking

  1. Isoflurane, sevoflurane and desflurane use in cane toads (Rhinella marina)

    PubMed Central

    Morrison, Kaleigh E.; Strahl-Heldreth, Danielle; Clark-Price, Stuart C.

    2016-01-01

    Anaesthetic chamber concentrations of isoflurane, sevoflurane and desflurane that resulted in loss of righting reflex within 15 minutes in 50 per cent of toads (Rhinella marina) exposed (ED50-LRR<15MIN) were identified. The median and range ED50-LRR<15MIN was 1.4 (0.9–1.4) per cent for isoflurane, 1.75 (1.1–1.9) per cent for sevoflurane and 4.4 (4.3–5.5) per cent for desflurane. Subsequently, toads were exposed to 1.5 times the ED50-LRR<15MIN and times to loss and return of righting reflex were identified. All toads for all anaesthetics lost righting reflex. The median and range loss of righting reflex was 4:00 (3:00–5:30) minutes for isoflurane, 4:45 (3:30–7:00) minutes for sevoflurane, and 4:15 (4:00–5:30) minutes for desflurane and was not different between anaesthetics. Time to return of righting reflex was 175 (123–211) minutes for isoflurane, 192 (116–383) minutes for sevoflurane and 74 (52–220) minutes for desflurane. Time to return of righting reflex was significantly shorter for desflurane compared with isoflurane or sevoflurane. The use of isoflurane, sevoflurane or desflurane can be used to provide immobilisation to cane toads and potentially other anurans. Induction times are likely similar when using an anaesthetic chamber to provide anaesthesia. However recovery time may take twice as long when utilising isoflurane or sevoflurane over desflurane.

  2. Sexual Recruitment in Zostera marina: Progress toward a Predictive Model

    PubMed Central

    2015-01-01

    Ecophysiological stress and physical disturbance are capable of structuring meadows through a combination of direct biomass removal and recruitment limitation; however, predicting these effects at landscape scales has rarely been successful. To model environmental influence on sexual recruitment in perennial Zostera marina, we selected a sub-tidal, light-replete study site with seasonal extremes in temperature and wave energy. During an 8-year observation period, areal coverage increased from 4.8 to 42.7%. Gains were stepwise in pattern, attributable to annual recruitment of patches followed by centrifugal growth and coalescence. Recruitment varied from 13 to 4,894 patches per year. Using a multiple linear regression approach, we examined the association between patch appearance and relative wave energy, atmospheric condition and water temperature. Two models were developed, one appropriate for the dispersal of naked seeds, and another for rafted flowers. Results indicated that both modes of sexual recruitment varied as functions of wind, temperature, rainfall and wave energy, with a regime shift in wind-wave energy corresponding to periods of rapid colonization within our site. Temporal correlations between sexual recruitment and time-lagged climatic summaries highlighted floral induction, seed bank and small patch development as periods of vulnerability. Given global losses in seagrass coverage, regions of recovery and re-colonization will become increasingly important. Lacking landscape-scale process models for seagrass recruitment, temporally explicit statistical approaches presented here could be used to forecast colonization trajectories and to provide managers with real-time estimates of future meadow performance; i.e., when to expect a good year in terms of seagrass expansion. To facilitate use as forecasting tools, we did not use statistical composites or normalized variables as our predictors. This study, therefore, represents a first step toward linking

  3. Bioelectrical activity in the heart of the lugworm Arenicola marina.

    PubMed

    Abramochkin, Denis V; Tennova, Natalia V; Hirazova, Elizaveta E; Pizgareva, Anna V; Kuzmin, Vladislav S; Sukhova, Galina S

    2010-06-01

    Standard microelectrode technique was used to study electrical activity of the isolated heart of the polychaete annelid, Arenicola marina. Typical pacemaker activity with slow diastolic depolarization was observed in all recordings. The average maximum diastolic potential (-58.4 +/- 3.2 mV), the average amplitude of the action potential (28.7 +/- 4.7 mV) and the average total duration of the action potential (2,434 +/- 430 ms) were determined. There has been no gradient of automaticity observed in our studies, which suggests that all regions of the Arenicola heart could possess pacemaker functions. Acetylcholine (ACh) produced a concentration dependent (5 x 10(-8)-5 x 10(-5) M) increase of the beating rate via increase in the rate of the diastolic depolarization. ACh (5 x 10(-5) M) increased beating rate by 2.5-fold compared to the control rate. A stronger action of ACh resulted in depolarization, block of action potential generation and contracture of the heart. The non-hydrolysable ACh analog carbacholine (10(-8)-10(-6) M) produced similar effects. All effects of ACh and carbacholine were abolished by 5 x 10(-6) M atropine. D-Tubocurarine (5 x 10(-5) M) did not significantly alter effects of ACh or carbacholine. Epinephrine (10(-8)-10(-6) M) caused the slowing of pacemaker activity and marked decrease of action potential duration. 10(-6) M epinephrine produced complete cardiac arrest. The effects of epinephrine were not significantly altered by the beta-blocker propranolol (5 x 10(-6) M). The beta-agonist isoproterenol (10(-7)-10(-5) M) and the alpha-agonist xylometazoline (10(-6)-10(-5) M) did not produce significant effects. Thus, cholinergic effects in the Arenicola heart are likely to be mediated via muscarinic receptors, while the nature of adrenergic effects needs further investigation. PMID:20198374

  4. Isoflurane, sevoflurane and desflurane use in cane toads (Rhinella marina).

    PubMed

    Morrison, Kaleigh E; Strahl-Heldreth, Danielle; Clark-Price, Stuart C

    2016-01-01

    Anaesthetic chamber concentrations of isoflurane, sevoflurane and desflurane that resulted in loss of righting reflex within 15 minutes in 50 per cent of toads (Rhinella marina) exposed (ED50-LRR<15MIN) were identified. The median and range ED50-LRR<15MIN was 1.4 (0.9-1.4) per cent for isoflurane, 1.75 (1.1-1.9) per cent for sevoflurane and 4.4 (4.3-5.5) per cent for desflurane. Subsequently, toads were exposed to 1.5 times the ED50-LRR<15MIN and times to loss and return of righting reflex were identified. All toads for all anaesthetics lost righting reflex. The median and range loss of righting reflex was 4:00 (3:00-5:30) minutes for isoflurane, 4:45 (3:30-7:00) minutes for sevoflurane, and 4:15 (4:00-5:30) minutes for desflurane and was not different between anaesthetics. Time to return of righting reflex was 175 (123-211) minutes for isoflurane, 192 (116-383) minutes for sevoflurane and 74 (52-220) minutes for desflurane. Time to return of righting reflex was significantly shorter for desflurane compared with isoflurane or sevoflurane. The use of isoflurane, sevoflurane or desflurane can be used to provide immobilisation to cane toads and potentially other anurans. Induction times are likely similar when using an anaesthetic chamber to provide anaesthesia. However recovery time may take twice as long when utilising isoflurane or sevoflurane over desflurane. PMID:27651914

  5. Laboratory experiments on eelgrass (Zostera Marina L.) decomposition

    NASA Astrophysics Data System (ADS)

    Pellikaan, G. C.

    Eelgrass, Zostera marina L., forms large quantities of detritus in Lake Grevelingen. Laboratory experiments with green eelgrass and eelgrass detritus have been performed under aerobic and anaerobic conditions to study leaching and chemical changes of plant matter and surrounding medium. DW losses were less than 30%, demonstrating that field litterbag experiments overestimated the decomposition rate highly. This leads to the conclusion that eelgrass detritus should accumulate in Lake Grevelingen. POC and AFDW decreased during decomposition. PON and POP fluctuated and only C/P ratio in anaerobically incubated detritus showed a clear pattern. C/N ratio behaved rather stable and cannot be used as a valuable index for decomposition processes. Initial contents of Na, K, Ca and Mg in eelgrass differed from literature values. During decomposition Na, K and Ca increased, while Mg remained constant. Leaching of DOC, PO 4, NH 4 and NO 3 was rapid in the first hours of incubation, but leaching products did not change pH. Initial DOC and PO 4 concentrations were much higher in media with green eelgrass than in detritus series; no differences between aerobic and anaerobic series were found. In all series NO 3 concentrations were low. HN 4 and total dissolved N increased in anaerobic incubations. pH remained constant in detritus series, but changed significantly in the green grass series, concomittantly with drastic DOC decreases and DW increases, after 9 to 10 days, especially under aerobic conditions. This indicated high activity and growth of particle associated bacteria or formation of aggregates. A conversion factor of 66% for DOC to POC has been calculated. About 10% of DOC remained in the incubation vessels and will be refractory. In budgets for C, N and P the dissolved fractions were always small (1 to 20%) compared with the particulate fractions. The lost fractions were due to non-recovered, very small particulate matter. High losses for P have possibly been caused by

  6. Citreicella marina sp. nov., isolated from deep-sea sediment.

    PubMed

    Lai, Qiliang; Fu, Yuanyuan; Wang, Jianning; Chen, Shuangxi; Zhong, Huanzi; Sun, Fengqin; Shao, Zongze

    2011-04-01

    A taxonomic study was carried out on a novel strain, designated CK-I3-6(T), which was isolated from deep-sea sediment of the south-west Indian Ocean Ridge. Cells were Gram-reaction-negative, oxidase- and catalase-positive, rod-shaped and non-motile. Growth was observed at 4-38 °C and in 1-12 % (w/v) NaCl. Cells were able to degrade gelatin and oxidize thiosulfate but did not reduce nitrate. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain CK-I3-6(T) belonged to the genus Citreicella with a sequence similarity of 97.3 % to Citreicella thiooxidans CHLG 1(T), while similarities with other taxa were <95.7 %. DNA-DNA hybridization showed that strain CK-I3-6(T) and C. thiooxidans CHLG 1(T) showed a low DNA-DNA relatedness (48±3 %). The principal fatty acids were C(16 : 0) (7.8 %), C(18 : 1)ω7c (66.6 %), summed feature 3 (C(16 : 1)ω6c and/or C(16 : 1)ω7c; 6.3 %) and C(19 : 0)ω8c cyclo (10.0 %). The chromosomal DNA G+C content was 67.5 mol%. On the basis of the combined genotypic and phenotypic data, strain CK-I3-6(T) represents a novel species of the genus Citreicella, for which the name Citreicella marina sp. nov. is proposed. The type strain is CK-I3-6(T) ( = CCTCC AB 209064(T)  = LMG 25230(T)  = MCCC 1A03060(T)).

  7. New species of Parapharyngodon (Nematoda: Pharyngodonidae) in Rhinella marina (Anura: Bufonidae) from Grenada, West Indies

    USGS Publications Warehouse

    Bursey, Charles; Drake, Michael; Cole, Rebecca; Sterner, Mauritz; Pinckney, Rhonda; Zieger, Ulrike

    2013-01-01

    Parapharyngodon grenadaensis n. sp. (Nematoda: Pharyngodonidae) from the large intestine of the cane toad, Rhinella marina, is described and illustrated. Parapharyngodon grenadaensis n. sp. is the 48th species assigned to the genus and the 16th species from the Neotropical region. It differs from other species in the genus by possessing 4 pairs of caudal papillae, an echinate anterior cloacal lip, and a blunt spicule of 67–104 μm. This is only the second report of R. marina harboring a species of Parapharyngodon.

  8. New species of Parapharyngodon (Nematoda: Pharyngodonidae) in Rhinella marina (Anura: Bufonidae) from Grenada, West Indies.

    PubMed

    Bursey, Charles; Drake, Michael; Cole, Rebecca; Sterner Iii, Mauritz; Pinckney, Rhonda; Zieger, Ulrike

    2013-06-01

    Parapharyngodon grenadaensis n. sp. (Nematoda: Pharyngodonidae) from the large intestine of the cane toad, Rhinella marina, is described and illustrated. Parapharyngodon grenadaensis n. sp. is the 48th species assigned to the genus and the 16th species from the Neotropical region. It differs from other species in the genus by possessing 4 pairs of caudal papillae, an echinate anterior cloacal lip, and a blunt spicule of 67-104 μm. This is only the second report of R. marina harboring a species of Parapharyngodon.

  9. Analysis of transcriptional regulation and tissue-specific expression of Avicennia marina Plasma Membrane Protein 3 suggests it contributes to Na(+) transport and homoeostasis in A. marina.

    PubMed

    Chidambaram, Rajalakshmi; Venkataraman, Gayatri; Parida, Ajay

    2015-07-01

    Plasma membrane proteins (PMP3) play a role in cation homoeostasis. The 5' flanking sequence of stress inducible, Avicennia marina PMP3 (AmPMP3prom) was transcriptionally fused to (a) GUS or (b) GFP-AmPMP3 and analyzed in transgenic tobacco. Tissue-histochemical GUS and GFP:AmPMP3 localization are co-incident under basal and stress conditions. AmPMP3prom directed GUS activity is highest in roots. Basal transcription is conferred by a 388bp segment upstream of the translation start site. A 463bp distal enhancer in the AmPMP3prom confers enhanced expression under salinity in all tissues and also responds to increases in salinity. The effect of a central, stem-specific negative regulatory region is suppressed by the distal enhancer. The A. marina rhizosphere encounters dynamic changes in salinity at the inter-tidal interface. The complex, tissue-specific transcriptional responsiveness of AmPMP3 to salinity appears to have evolved in response to these changes. Under salinity, guard cell and phloem-specific expression of GFP:AmPMP3 is highly enhanced. Mesophyll, trichomes, bundle sheath, parenchymatous cortex and xylem parenchyma also show GFP:AmPMP3 expression. Cis-elements conferring stress, root and vascular-specific expression are enriched in the AmPMP3 promoter. Pronounced vascular-specific AmPMP3 expression suggests a role in salinity induced Na(+) transport, storage, and secretion in A. marina.

  10. Negative effects of blue mussel ( Mytilus edulis) presence in eelgrass ( Zostera marina) beds in Flensborg fjord, Denmark

    NASA Astrophysics Data System (ADS)

    Vinther, Hanne Fogh; Laursen, Jens Sund; Holmer, Marianne

    2008-03-01

    The effect of blue mussel ( Mytilus edulis) presence in eelgrass ( Zostera marina) beds was studied from June 2004 to July 2005 in Flensborg fjord, Denmark. The field experiments were conducted at two stations, one with only Z. marina (Eelgrass station) present and one where M. edulis were present in the Z. marina beds (Mixed station). Zostera marina parameters were measured (growth of leaves, shoot density, leaf length, and nutrient content) in combination with epiphyte cover and sediment parameters (sulphate reduction rates, sediment nutrient fluxes, organic content, C, N and P content) to examine possible positive and negative effects of the mussels on eelgrass performance. The fluxes of ammonium from the sediments were stimulated at all sampling dates at the Mixed station, and possibly stimulated epiphyte growth at this station. Further 15N signals in epiphytes from the Mixed station suggested that excretion products from the mussels were important nitrogen sources at this station. Sulphate reduction rates were enhanced at the Mixed station and also sediment sulphide concentrations increased under mussel influence, which may have resulted in sulphide toxicity and decreased growth of Z. marina at this station. The study indicates that for Z. marina beds in Flensborg Fjord the effects of M. edulis in seagrass beds are primarily negative, and raises the question whether this leads to negative effects on the stability and expansion of Z. marina beds.

  11. 18 CFR 1304.403 - Marina sewage pump-out stations and holding tanks.

    Code of Federal Regulations, 2013 CFR

    2013-04-01

    ... pump-out facilities to shore-based treatment plants or intermediate transfer facilities; (j) A reliable... 18 Conservation of Power and Water Resources 2 2013-04-01 2012-04-01 true Marina sewage pump-out stations and holding tanks. 1304.403 Section 1304.403 Conservation of Power and Water Resources...

  12. 18 CFR 1304.403 - Marina sewage pump-out stations and holding tanks.

    Code of Federal Regulations, 2012 CFR

    2012-04-01

    ... pump-out facilities to shore-based treatment plants or intermediate transfer facilities; (j) A reliable... 18 Conservation of Power and Water Resources 2 2012-04-01 2012-04-01 false Marina sewage pump-out stations and holding tanks. 1304.403 Section 1304.403 Conservation of Power and Water Resources...

  13. 18 CFR 1304.403 - Marina sewage pump-out stations and holding tanks.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... pump-out facilities to shore-based treatment plants or intermediate transfer facilities; (j) A reliable... 18 Conservation of Power and Water Resources 2 2014-04-01 2014-04-01 false Marina sewage pump-out stations and holding tanks. 1304.403 Section 1304.403 Conservation of Power and Water Resources...

  14. 76 FR 38020 - Safety Zone; Bay Point Fireworks, Bay Point Marina; Marblehead, OH

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-06-29

    ... SECURITY Coast Guard 33 CFR Part 165 RIN 1625-AA00 Safety Zone; Bay Point Fireworks, Bay Point Marina.... This Zone is intended to restrict vessels from portions of Lake Erie for the Bay Point Fireworks. This... fireworks displays. DATES: This regulation is effective from 10 p.m. on July 2, 2011 through 10:20 p.m....

  15. 33 CFR 162.200 - Marina del Rey, Calif.; restricted area.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... dealing with this section in 33 CFR Part 207. ... 33 Navigation and Navigable Waters 2 2011-07-01 2011-07-01 false Marina del Rey, Calif... SECURITY (CONTINUED) PORTS AND WATERWAYS SAFETY INLAND WATERWAYS NAVIGATION REGULATIONS § 162.200...

  16. 33 CFR 162.200 - Marina del Rey, Calif.; restricted area.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... dealing with this section in 33 CFR Part 207. ... 33 Navigation and Navigable Waters 2 2010-07-01 2010-07-01 false Marina del Rey, Calif... SECURITY (CONTINUED) PORTS AND WATERWAYS SAFETY INLAND WATERWAYS NAVIGATION REGULATIONS § 162.200...

  17. Biochemical characterization of the eelgrass Zostera marina at its southern distribution limit in the North Pacific

    USGS Publications Warehouse

    Cabello-Pasini, Alejandro; Munoz-Salazar, R.; Ward, D.H.

    2004-01-01

    The eelgrass Zostera marina L. is distributed along the Baja California Peninsula (Mexico) where it is exposed to a wide range of irradiances and temperatures that could promote changes in its biochemical composition. Consequently, the objective of this study was to characterize the variations in the levels of chlorophyll, carbohydrates, proteins, fiber, ash and calories in the shoots of Z. marina from the north (San Quintin) and south (Ojo de Liebre and San Ignacio lagoons) of the peninsula. Temperature in the southern lagoons was 5-6??C higher than in the northern lagoon; likewise, in situ irradiance was two-fold greater in the south than in the north. As a result of the lower irradiance levels, the concentration of chlorophyll in the shoots of Z. marina was twice as high (1.7 mg gWW-1) in the northern lagoon than in the southern ones (0.8 mg gWW-1). Similar to chlorophyll levels, the concentration of soluble carbohydrates in the shoots was greater in the northern lagoon than in the southern ones, suggesting that the high levels of chlorophyll are enough to compensate for the low irradiance levels and to maintain a positive carbon balance at San Quintin. On the other hand, the levels of proteins in the shoots from the north of the peninsula were slightly lower than those from the southern populations. In general, these results suggest that the different environmental conditions to which Z. marina is exposed along the peninsula impact its biochemical composition.

  18. The cane or marine toad, Rhinella marina (Anura, Bufonidae): two genetically and morphologically distinct species.

    PubMed

    Acevedo, Aldemar A; Lampo, Margarita; Cipriani, Roberto

    2016-04-18

    Rhinella marina is a Neotropical toad that has been introduced widely worldwide. Its toxic effects to frog-eating predators threaten the native and domestic fauna of some regions where it has been introduced. Despite previous studies suggesting two genetically distinct cryptic species within R. marina, one east and one west of the Andes, its taxonomic status remained unresolved due to the absence of morphological complementary evidence. For the first time, data from two mitochondrial genes (ND3 and CR) and 23 morphometric landmarks are combined to evaluate the taxonomic status of this species. Our results support the hypothesis of two separate evolutionary lineages within R. marina and demonstrate that these lineages have significantly diverged in skull shape. We identified two distinct morphotypes, one eastern and one Andean western, with no overlapping morphospaces. The geographic pattern of genetic variation was consistent with a stable structured population with no evidence of recent demographic or geographic expansions. The concordance between the observed geographic patterns in morphometric and genic traits calls for the recognition of two species under R. marina name.

  19. [Adaptability of mangrove Avicennia marina seedlings to simulated tide-inundated times].

    PubMed

    Liao, Bao-wen; Qiu, Feng-ying; Zhang, Liu-en; Han, Jing; Guan, Wei

    2010-05-01

    A laboratory test on the effects of differents simulated tide-inundated times with 2, 4, 6, 8, 10, 12, 14, 16, 18, 20, 22, 24 h x d(-1) on the growth of Avicennia marina seedlings was conducted. The ten growth information indices including chlorophyll, root vigor, growth, biomass and photosynthetic rate were mensurated. The principal components analysis was made combining the ten growth information indices. The 210 d experimental results showed that the chlorophyll, root vigor, growth and biomass would rise first and then fall as the extension of the inundate time; and they changed suddenly at the threshold inundate time 16 h x d(-1). The growth and biomass of Avicennia marina seedlings with more than 16 hours tide-inundated time per day were less than them with no more than 16 hours tide-inundated time per day. The maximum value of stem increment each month, leaf blade increment each month, dry weight of stem, dry weight of root and total biomass were under the 10 hours tide-inundated time per day. It concluded that Avicennia marina seedlings would grow adaptively with less than 16 hours tide-inundated time per day, 8-12 hours of tide-inundated time per day is the most suitable for the growth of Avicennia marina seedlings, while 16 h x d(-1) is a critical tide-inundated time when the plant responded to be obviously inadaptable.

  20. 75 FR 4783 - Federal Consistency Appeal by Villa Marina Yacht Harbour, Inc.

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-01-29

    ..., 2009. See 74 FR 42,650. Under the CZMA, the Secretary must close the decision record in an appeal 160... National Oceanic and Atmospheric Administration Federal Consistency Appeal by Villa Marina Yacht Harbour...). ACTION: Notice of stay--closure of administrative appeal decision record. SUMMARY: This...

  1. ESCHERICHIA COLI AND TOTAL COLIFORMS IN WATER AND SEDIMENTS AT LAKE MARINAS

    EPA Science Inventory

    Escherichia coli, a fecal coliform, and total coliforms were monitored between September 1999 to October 2001 in five marinas on Lake Texoma, located on the Oklahoma and Texas border. General trend was that densities of E. coli were lower in the summer season due to the lower ...

  2. The cane or marine toad, Rhinella marina (Anura, Bufonidae): two genetically and morphologically distinct species.

    PubMed

    Acevedo, Aldemar A; Lampo, Margarita; Cipriani, Roberto

    2016-01-01

    Rhinella marina is a Neotropical toad that has been introduced widely worldwide. Its toxic effects to frog-eating predators threaten the native and domestic fauna of some regions where it has been introduced. Despite previous studies suggesting two genetically distinct cryptic species within R. marina, one east and one west of the Andes, its taxonomic status remained unresolved due to the absence of morphological complementary evidence. For the first time, data from two mitochondrial genes (ND3 and CR) and 23 morphometric landmarks are combined to evaluate the taxonomic status of this species. Our results support the hypothesis of two separate evolutionary lineages within R. marina and demonstrate that these lineages have significantly diverged in skull shape. We identified two distinct morphotypes, one eastern and one Andean western, with no overlapping morphospaces. The geographic pattern of genetic variation was consistent with a stable structured population with no evidence of recent demographic or geographic expansions. The concordance between the observed geographic patterns in morphometric and genic traits calls for the recognition of two species under R. marina name. PMID:27394759

  3. Physiological Responses of Zostera marina and Cymodocea nodosa to Light-Limitation Stress

    PubMed Central

    Silva, João; Barrote, Isabel; Costa, Monya M.; Albano, Sílvia; Santos, Rui

    2013-01-01

    The effects of light-limitation stress were investigated in natural stands of the seagrasses Zostera marina and Cymodocea nodosa in Ria Formosa coastal lagoon, southern Portugal. Three levels of light attenuation were imposed for 3 weeks in two adjacent meadows (2–3 m depth), each dominated by one species. The response of photosynthesis to light was determined with oxygen electrodes. Chlorophylls and carotenoids were determined by high-pressure liquid chromatography (HPLC). Soluble protein, carbohydrates, malondialdehyde and phenol contents were also analysed. Both species showed evident signs of photoacclimation. Their maximum photosynthetic rates were significantly reduced with shading. Ratios between specific light harvesting carotenoids and the epoxidation state of xanthophyll cycle carotenoids revealed significantly higher light harvesting efficiency of C. nodosa, a competitive advantage in a low light environment. The contents of both soluble sugars and starch were considerably lower in Z. marina plants, particularly in the rhizomes, decreasing even further with shading. The different carbohydrate energy storage strategies found between the two species clearly favour C. nodosa's resilience to light deprivation, a condition enhanced by its intrinsic arrangement of the pigment pool. On the other hand, Z. marina revealed a lower tolerance to light reduction, mostly due to a less plastic arrangement of the pigment pool and lower carbohydrate storage. Our findings indicate that Z. marina is close to a light-mediated ecophysiological threshold in Ria Formosa. PMID:24312260

  4. Passive and active defense in toads: the parotoid macroglands in Rhinella marina and Rhaebo guttatus.

    PubMed

    Mailho-Fontana, Pedro L; Antoniazzi, Marta M; Toledo, Luís F; Verdade, Vanessa K; Sciani, Juliana M; Barbaro, Katia C; Pimenta, Daniel C; Rodrigues, Miguel T; Jared, Carlos

    2014-02-01

    Amphibians have many skin poison glands used in passive defense, in which the aggressor causes its own poisoning when biting prey. In some amphibians the skin glands accumulate in certain regions forming macroglands, such as the parotoids of toads. We have discovered that the toad Rhaebo guttatus is able to squirt jets of poison towards the aggressor, contradicting the typical amphibian defense. We studied the R. guttatus chemical defense, comparing it with Rhinella marina, a sympatric species showing typical toad passive defense. We found that only in R. guttatus the parotoid is adhered to the scapula and do not have a calcified dermal layer. In addition, in this species, the plugs obstructing the glandular ducts are more fragile when compared to R. marina. As a consequence, the manual pressure necessary to extract the poison from the parotoid is twice as high in R. marina when compared to that used in R. guttatus. Compared to R. marina, the poison of R. guttatus is less lethal, induces edema and provokes nociception four times more intense. We concluded that the ability of R. guttatus to voluntary squirt poison is directly related to its stereotyped defensive behavior, together with the peculiar morphological characteristics of its parotoids. Since R. guttatus poison is practically not lethal, it is possibly directed to predators' learning, causing disturbing effects such as pain and edema. The unique mechanism of defense of R. guttatus may mistakenly justify the popular myth that toads, in general, squirt poison into people's eyes. PMID:24130001

  5. EFFECTS OF EROSION AND MACROALGAE ON INTERTIDAL EELGRASS (ZOSTERA MARINA) IN A NORTHEASTERN PACIFIC ESTUARY (USA)

    EPA Science Inventory

    Eelgrass (Zostera marina) in open-coast northeastern Pacific estuaries is primarily intertidal, yet little research has been done on the natural factors controlling its upper intertidal growth limits. This two-year study in the Yaquina Estuary (Newport, Oregon, USA) evaluated the...

  6. OCCURRENCE OF METYL TERT-BUTYL ETHER (MTBE) AT FIVE MARINAS IN LAKE TEXOMA

    EPA Science Inventory



    Occurrence of methyl tert-butyl ether (MTBE) in five marinas was monitored between June 1999 and November 2000 in Lake Texoma located on the border of Oklahoma and Texas. MTBE is a commonly used gasoline additive and a suspected carcinogen. Lake water was collected at loc...

  7. Population structure and genetic diversity among eelgrass (Zostera marina) beds and depths in San Francisco Bay.

    PubMed

    Ort, Brian S; Cohen, C Sarah; Boyer, Katharyn E; Wyllie-Echeverria, Sandy

    2012-07-01

    The seagrass Zostera marina is widely distributed in coastal regions throughout much of the northern hemisphere, forms the foundation of an important ecological habitat, and is suffering population declines. Studies in the Atlantic and Pacific oceans indicate that the degree of population genetic differentiation is location dependent. San Francisco Bay, California, USA, is a high-current, high-wind environment where rafting of seed-bearing shoots has the potential to enhance genetic connectivity among Z. marina populations. We tested Z. marina from six locations, including one annual population, within the bay to assess population differentiation and to compare levels of within-population genetic diversity. Using 7 microsatellite loci, we found significant differentiation among all populations. The annual population had significantly higher clonal diversity than the others but showed no detectible differences in heterozygosity or allelic richness. There appears to be sufficient input of genetic variation through sexual reproduction or immigration into the perennial populations to prevent significant declines in the number and frequency of alleles. In additional depth comparisons, we found differentiation among deep and shallow portions in 1 of 3 beds evaluated. Genetic drift, sweepstakes recruitment, dispersal limitation, and possibly natural selection may have combined to produce genetic differentiation over a spatial scale of 3-30 km in Z. marina. This implies that the scale of genetic differentiation may be smaller than expected for seagrasses in other locations too. We suggest that populations in close proximity may not be interchangeable for use as restoration material.

  8. 78 FR 45061 - Safety Zone; Sister Bay Marina Fest Fireworks and Ski Show, Sister Bay, WI

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-07-26

    ... Department of Homeland Security FR Federal Register NPRM Notice of Proposed Rulemaking TFR Temporary Final... SECURITY Coast Guard 33 CFR Part 165 RIN 1625-AA00 Safety Zone; Sister Bay Marina Fest Fireworks and Ski... intended to restrict vessels from a portion of Sister Bay due to a fireworks display and ski show....

  9. MONITORING CHLOROPHYLL-A AS A MEASURE OF ALGAE IN LAKE TEXOMA MARINAS

    EPA Science Inventory

    Lake water quality in five marinas on Lake Texoma was determined over a two year period. Quality parameters were methyl tert-butyl ether, nitrate, some metals, fecal coliform and algae. Common blue-green algae can produce a toxin harmful to other aquatic organisms and humans. ...

  10. Long-term Changes of a Brackish-water Eelgrass ( Zostera marina L.) Community Indicate Effects of Coastal Eutrophication

    NASA Astrophysics Data System (ADS)

    Boström, C.; Bonsdorff, E.; Kangas, P.; Norkko, A.

    2002-11-01

    The distribution and importance of eelgrass (Zostera marina L.) meadows for associated faunal communities in the coastal waters of the Baltic Sea are still poorly known. In these low-saline (5-7), shallow coastal areasZ. marina grows at its limit of distribution, forming mostly patchy meadows. In June 1993, a seagrass locality (Tvärminne, SW Finland) thoroughly studied in 1968-71 was revisited in order to detect possible long-term changes in both vegetation structure (distribution, density, biomass) and benthic fauna (species composition, abundance, biomass, distribution and diversity patterns). The same sampling design as in the 1970s was used in both sparse (<20 shoots m-2) and dense (>150 shoots m-2) Z. marina. In addition, the feeding-efficiency of adult flounder (Platichtys flesus L.) on infauna was measured by counting feeding pits in vegetated and bare sand. The analysis shows that the shoot density had increased in sparse Z. marina, while dense Z. marina patches showed similar biomass values (20 g AFDW m-2) as in the 1970s. In contrast to the vegetation, where little apparent change could be recorded, the total abundance and biomass of zoobenthos has increased significantly between 1968-71 and 1993 in the dense Z. marina patches. These changes are mainly attributed to significant increases of the bivalve Macoma balthica L., mudsnails Hydrobia spp. and oligochaetes. In sparseZ. marina diversity in terms of number of taxa exhibited minor changes over time, whereas in dense Z. marina patches the mean number of taxa has increased from 16 to 20. The vegetation cover was sufficient to reduce significantly the predation effects of flounder on seagrass infauna. This study represents a rare example of long-term persistence of seagrass communities in an area where the negative effects of nutrient enrichment are evident. The faunal changes in the Z. marina community indicate increased food availability, which is associated with positive effects of coastal

  11. Chapter F. The Loma Prieta, California, Earthquake of October 17, 1989 - Marina District

    USGS Publications Warehouse

    O'Rourke, Thomas D.

    1992-01-01

    During the earthquake, a total land area of about 4,300 km2 was shaken with seismic intensities that can cause significant damage to structures. The area of the Marina District of San Francisco is only 4.0 km2--less than 0.1 percent of the area most strongly affected by the earthquake--but its significance with respect to engineering, seismology, and planning far outstrips its proportion of shaken terrain and makes it a centerpiece for lessons learned from the earthquake. The Marina District provides perhaps the most comprehensive case history of seismic effects at a specific site developed for any earthquake. The reports assembled in this chapter, which provide an account of these seismic effects, constitute a unique collection of studies on site, as well as infrastructure and societal, response that cover virtually all aspects of the earthquake, ranging from incoming ground waves to the outgoing airwaves used for emergency communication. The Marina District encompasses the area bounded by San Francisco Bay on the north, the Presidio on the west, and Lombard Street and Van Ness Avenue on the south and east, respectively. Nearly all of the earthquake damage in the Marina District, however, occurred within a considerably smaller area of about 0.75 km2, bounded by San Francisco Bay and Baker, Chestnut, and Buchanan Streets. At least five major aspects of earthquake response in the Marina District are covered by the reports in this chapter: (1) dynamic site response, (2) soil liquefaction, (3) lifeline performance, (4) building performance, and (5) emergency services.

  12. Establishment of Avicennia marina mangroves on accreting coastline at Sungai Haji Dorani, Selangor, Malaysia

    NASA Astrophysics Data System (ADS)

    Tamin, Noraini Mohd.; Zakaria, Rozainah; Hashim, Roslan; Yin, Yu

    2011-10-01

    Avicennia marina saplings were established within a restoration area at Sg. Hj. Dorani, Malaysia between May and August 2010. Sapling establishment was achieved following the construction of segmented and hard breakwater as mitigating measure against coastal erosion. Geostructures known as brush faschines were installed within the restoration area as secondary sediment and seed traps. There was a steady increase in the sand content of the soil from 5% in November 2008 to 18% in May 2010. The dominant soil content was silt but it fluctuated and declined slightly over the same period, between 80% in November 2008 and 72% in May 2010. The accreting shoreline behind the breakwater had stabilised within 18 months. Subsequently, the first batch of A. marina wild seedlings or wildings was established on the mud surface in September 2009. Only about 10% of these wildings survived and showed high survival rate (90%) over the next eight months. Wildings that were naturally established near mother trees showed good growth performance. No wilding was established after the fruiting season in August 2010 as all seeds that were dispersed into the restoration area were washed away by September 2010. Tall, A. marina wild saplings (1 m) planted within the restoration area showed higher survival rate (80%) compared to planted saplings of Rhizophora apiculata (30%). Final planting of a thousand 1 m tall A. marina wild saplings was carried out from June 2010, in clumps of 20 and in 1 m × 1 m spacing. By the end of September 2010 clusters of regenerating A. marina mangroves about 1.5 m tall were successfully established on the accreting coastline.

  13. Transcriptome Sequencing and Analysis of Leaf Tissue of Avicennia marina Using the Illumina Platform

    PubMed Central

    Zhang, Wanke; Huang, Rongfeng; Chen, Shouyi; Zheng, Yizhi

    2014-01-01

    Avicennia marina is a widely distributed mangrove species that thrives in high-salinity habitats. It plays a significant role in supporting coastal ecosystem and holds unique potential for studying molecular mechanisms underlying ecological adaptation. Despite and sometimes because of its numerous merits, this species is facing increasing pressure of exploitation and deforestation. Both study on adaptation mechanisms and conservation efforts necessitate more genomic resources for A. marina. In this study, we used Illumina sequencing of an A. marina foliar cDNA library to generate a transcriptome dataset for gene and marker discovery. We obtained 40 million high-quality reads and assembled them into 91,125 unigenes with a mean length of 463 bp. These unigenes covered most of the publicly available A. marina Sanger ESTs and greatly extended the repertoire of transcripts for this species. A total of 54,497 and 32,637 unigenes were annotated based on homology to sequences in the NCBI non-redundant and the Swiss-prot protein databases, respectively. Both Gene Ontology (GO) analysis and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis revealed some transcriptomic signatures of stress adaptation for this halophytic species. We also detected an extraordinary amount of transcripts derived from fungal endophytes and demonstrated the utility of transcriptome sequencing in surveying endophyte diversity without isolating them out of plant tissues. Additionally, we identified 3,423 candidate simple sequence repeats (SSRs) from 3,141 unigenes with a density of one SSR locus every 8.25 kb sequence. Our transcriptomic data will provide valuable resources for ecological, genetic and evolutionary studies in A. marina. PMID:25265387

  14. Determining bathymetric distributions of the eelgrass Zostera marina L. in three turbid estuaries of the eastern North Pacific coast

    EPA Science Inventory

    Improved methods for determining bathymetric distributions of dominant intertidal plants throughout their estuarine range are needed. Zostera marina is a seagrass native to estuaries of the northeastern Pacific and many other sectors of the world ocean. The technique described ...

  15. In Situ Carbon Stable Isotope Tracer Experiments Elucidate Carbon Translocation Rates and Allocation Patterns in Zostera marina L. (eelgrass)

    EPA Science Inventory

    The intertidal seagrass Zostera marina is an important species that provides critical habitat for a number of estuarine species. Despite its widespread distribution, there is limited information on seasonal patterns of carbon dynamics of plants growing in situ, particularly esti...

  16. EFFECTS OF MICROTOPOGRAPHIC VARIATION ON MORPHOMETRICS AND SURVIVAL OF THE ANNUAL FORM OF THE EELGRASS, ZOSTERA MARINA

    EPA Science Inventory

    We sampled a disjunct population of the annual form of the seagrass Zostera marina occurring in the upper intertidal zone of Yaquina Bay, Oregon to determine whether there are differences in recruitment, growth, survivorship and morphology associated with microtopographic locatio...

  17. A comparative evaluation of biological activities and bioactive compounds of the seagrasses Zostera marina and Zostera noltei from southern Portugal.

    PubMed

    Custódio, Luísa; Laukaityte, Simona; Engelen, Aschwin H; Rodrigues, Maria João; Pereira, Hugo; Vizetto-Duarte, Catarina; Barreira, Luísa; Rodríguez, Hortensia; Alberício, Fernando; Varela, João

    2016-01-01

    This work assessed the antioxidant potential, acetylcholinesterase (AChE) inhibition and the in vitro cytotoxic activity of extracts of the seagrasses Zostera marina and Zostera noltei collected from southern Portugal. The total phenolic contents (TPCs), the rosmarinic acid (RA) concentration (HPLC/DAD) and the fatty acid (FA) profile (GC/MS) are also described. Z. marina had the highest TPC, radical scavenging activity against DPPH radicals and copper chelating activity. Z. noltei had metal chelation capacity to copper and iron ions. None of the species was able to inhibit AChE. Both seagrasses had high levels of polyunsaturated FAs. Z. marina significantly and selectively reduced the viability of tumorous neuronal cells. Z. noltei was highly toxic for the three cell lines tested and was selective against hepatocarcinoma cells at the concentration of 100 μg/mL. RA was the main compound identified in Z. marina, but not in Z. noltei.

  18. An effective seed protection method for planting Zostera marina (eelgrass) seeds: Implications for their large-scale restoration.

    PubMed

    Zhang, Pei-Dong; Fang, Chao; Liu, Jie; Xu, Qiang; Li, Wen-Tao; Liu, Yan-Shan

    2015-06-15

    We describe an innovative method of planting Zostera marina (eelgrass) seeds in which hessian bags filled with high-silted sediments are used as a seed protecting device. Here, we evaluated the effectiveness of the method through a field seed-sowing experiment over a three year period. The suitable seed planting density required by the seeds of Z. marina in this method was also investigated. In the spring following seed distribution, seedling establishment rate of Z. marina subjected to different seed densities of 200-500seedsbag(-1) ranged from 16% to 26%. New eelgrass patches from seed were fully developed and well maintained after 2-3years following distribution. The seed planting density of 400seedsbag(-1) may be the most suitable for the establishment of new eelgrass patches. Our results demonstrate that seed-based restoration can be an effective restoration tool and the technique presented should be considered for future large-scale Z. marina restoration projects.

  19. Draft Genome Sequences of Two Pseudoalteromonas Strains Isolated from Roots and Leaf Blades of the Seagrass Zostera marina.

    PubMed

    Alexiev, Alexandra; Krusor, Megan L; Jospin, Guillaume; Lang, Jenna M; Eisen, Jonathan A; Coil, David A

    2016-01-01

    Here, we present the draft genome sequences for Pseudoalteromonas sp. strain UCD-33C and Pseudoalteromonas lipolytica UCD-48B. Pseudoalteromonas sp. UCD-33C was isolated from Zostera marina roots and P. lipolytica UCD-48B from Z. marina leaf blades, both collected in Woods Hole, MA. These assemblies contain 4,479,285 bp and 4,592,435 bp, respectively. PMID:26893412

  20. Entamoeba marina n. sp.; a New Species of Entamoeba Isolated from Tidal Flat Sediment of Iriomote Island, Okinawa, Japan.

    PubMed

    Shiratori, Takashi; Ishida, Ken-Ichiro

    2016-05-01

    The genus Entamoeba includes anaerobic lobose amoebae, most of which are parasites of various vertebrates and invertebrates. We report a new Entamoeba species, E. marina n. sp. that was isolated from a sample of tidal flat sediment collected at Iriomote Island, Okinawa, Japan. Trophozoites of E. marina were 12.8-32.1 μm in length and 6.8-15.9 μm in width, whereas the cysts were 8.9-15.8 μm in diam. and contained four nuclei. The E. marina cells contained a rounded nucleus with a small centric karyosome and uniformly arranged peripheral chromatin. Although E. marina is morphologically indistinguishable from other tetranucleated cyst-forming Entamoeba species, E. marina can be distinguished from them based on the combination of molecular phylogenetic analyses using SSU rDNA gene and the difference of collection sites. Therefore, we propose E. marina as a new species of the genus Entamoeba.

  1. Inhibition of five natural products from Chinese herbs on the growth of Chattonella marina.

    PubMed

    Liu, Fei; He, Zheng-Bing; Li, Hong-Ye; Liu, Jie-Sheng; Yang, Wei-Dong

    2016-09-01

    The effects of five natural products from Chinese herbs including evodiamine, curcumin, 4-methoxysalicylaldehyde, esculin hydrate, and gramine on the growth of Chattonella marina, one of the most noxious red tide algae, were observed. Among them, gramine exhibited the highest inhibitory rate with LC50, 96h of 0.51 mg/l. After exposure to gramine, the activities of superoxide dismutase (SOD) and catalase (CAT), and content of malondialdehyde (MDA) increased in C. marina, suggesting that gramine could induce microalgae oxidative stress. In addition, chlorophyll a and the maximum quantum yield of photosynthesis (Fv/Fm) decreased following exposure to gramine, indicating the inhibition of photosynthesis activity in the microalgae. Combined with the fast inhibition against the algal cells and environmentally friendly character of gramine, we proposed that gramine might be a potential algaecide against marine harmful algae and that the oxidative damage and photosynthesis inhibition might be responsible for the toxicity of gramine on harmful algae. PMID:27250087

  2. Root metabolic responses to short term anaerobiosis in the temperate sea grass Zostera marina L

    SciTech Connect

    Smith, R.D.; Pregnall, A.M.; Alberte, R.S.

    1986-04-01

    The submerged angiosperm Z. marina grows in highly reducing marine sediments. The roots experience periods of oxygen deprivation at night when photosynthesis-mediated oxygen transport from the shoot ceases. Despite this apparently inhospitable environment, Z. marina is extremely productive. This study sought to determine root metabolic responses to short term anaerobiosis. Roots were incubated for 4 h in the presence of /sup 14/C-sucrose. Amino acids and Krebs cycle intermediates were then extracted and label was quantified. Ethanol and lactate were the most heavily labeled metabolites following short term anaerobiosis. Despite increased synthesis of ethanol during anaerobiosis, endogenous levels do not increase significantly. Instead over 90% of newly synthesized ethanol is released by roots into the incubation medium. The authors conclude that release of ethanol by roots occurs naturally and prevents excessive accumulation of a potentially toxic product.

  3. Microsatellite loci in eelgrass Zostera marina reveal marked polymorphism within and among populations.

    PubMed

    Reusch, T B; Stam, W T; Olsen, J L

    1999-02-01

    Using an enriched genomic library, we developed seven (CT)n/(GA)n microsatellite loci for eelgrass Zostera marina L. Enrichment is described and highly recommended for genomes in which microsatellites are rare, such as in many plants. A test for polymorphism was performed on individuals from three geographically separated populations (N = 15/population) and revealed considerable genetic variation. The number of alleles per locus varied between five and 11 and the observed heterozygosities for single loci ranged from 0.16 to 0.81 within populations. Mean allele lengths were markedly different among populations, indicating that the identified loci will be useful in studying population structure in Z. marina. As the frequency of the most abundant multilocus genotype within populations was always < 1%, these loci have sufficient resolving power to address clone size in predominantly vegetatively reproducing populations.

  4. The role of current velocity in structuring eelgrass ( Zostera marina L.) meadows

    NASA Astrophysics Data System (ADS)

    Fonseca, Mark S.; Zieman, Joseph C.; Thayer, Gordon W.; Fisher, John S.

    1983-10-01

    Measurements of velocity profiles, bathymetry, and surface sediment characteristics across eelgrass ( Zostera marina L.) meadows yielded information on community development processes and functional attributes of this ecosystem. Height/length ratios of the meadows were positively correlated with tidal current velocity. Low, medium, and high current regimes were separated by surface current velocities of approximately 50 and 90 cm s -1. Z. marina can tolerate approximately 120-150 cm/sec current velocities in the areas studied. Per cent silt-clay and organic matter content of the surface sediments are negatively associated with shear velocity, suggesting that meadows in high current areas are sources while meadows in low current areas are sinks of autochthonous detritus. Current velocity maintains seagrass meadows at different equilibrium levels (relative climaxes). We theorize these different equilibrium levels provide unequal habitat utilization potentials for the associated faunal community.

  5. Inhibition of five natural products from Chinese herbs on the growth of Chattonella marina.

    PubMed

    Liu, Fei; He, Zheng-Bing; Li, Hong-Ye; Liu, Jie-Sheng; Yang, Wei-Dong

    2016-09-01

    The effects of five natural products from Chinese herbs including evodiamine, curcumin, 4-methoxysalicylaldehyde, esculin hydrate, and gramine on the growth of Chattonella marina, one of the most noxious red tide algae, were observed. Among them, gramine exhibited the highest inhibitory rate with LC50, 96h of 0.51 mg/l. After exposure to gramine, the activities of superoxide dismutase (SOD) and catalase (CAT), and content of malondialdehyde (MDA) increased in C. marina, suggesting that gramine could induce microalgae oxidative stress. In addition, chlorophyll a and the maximum quantum yield of photosynthesis (Fv/Fm) decreased following exposure to gramine, indicating the inhibition of photosynthesis activity in the microalgae. Combined with the fast inhibition against the algal cells and environmentally friendly character of gramine, we proposed that gramine might be a potential algaecide against marine harmful algae and that the oxidative damage and photosynthesis inhibition might be responsible for the toxicity of gramine on harmful algae.

  6. Biology of the Marine Heterotrophic Dinoflagellate Oxyrrhis marina: Current Status and Future Directions

    PubMed Central

    Guo, Zhiling; Zhang, Huan; Liu, Sheng; Lin, Senjie

    2013-01-01

    Heterotrophic dinoflagellates are prevalent protists in marine environments, which play an important role in the carbon cycling and energy flow in the marine planktonic community. Oxyrrhis marina (Dinophyceae), a widespread heterotrophic dinoflagellate, is a model species used for a broad range of ecological, biogeographic, and evolutionary studies. Despite the increasing research effort on this species, there lacks a synthesis of the existing data and a coherent picture of this organism. Here we reviewed the literature to provide an overview of what is known regarding the biology of O. marina, and identify areas where further studies are needed. As an early branch of the dinoflagellate lineage, O. marina shares similarity with typical dinoflagellates in permanent condensed chromosomes, less abundant nucleosome proteins compared to other eukaryotes, multiple gene copies, the occurrence of trans-splicing in nucleus-encoded mRNAs, highly fragmented mitochondrial genome, and disuse of ATG as a start codon for mitochondrial genes. On the other hand, O. marina also exhibits some distinct cytological features (e.g., different flagellar structure, absence of girdle and sulcus or pustules, use of intranuclear spindle in mitosis, presence of nuclear plaque, and absence of birefringent periodic banded chromosomal structure) and genetic features (e.g., a single histone-like DNA-associated protein, cob-cox3 gene fusion, 5′ oligo-U cap in the mitochondrial transcripts of protein-coding genes, the absence of mRNA editing, the presence of stop codon in the fused cob-cox3 mRNA produced by post-transcriptional oligoadenylation, and vestigial plastid genes). The best-studied biology of this dinoflagellate is probably the prey and predators types, which include a wide range of organisms. On the other hand, the abundance of this species in the natural waters and its controlling factors, genome organization and gene expression regulation that underlie the unusual cytological and

  7. Biology of the Marine Heterotrophic Dinoflagellate Oxyrrhis marina: Current Status and Future Directions

    PubMed Central

    Guo, Zhiling; Zhang, Huan; Liu, Sheng; Lin, Senjie

    2013-01-01

    Heterotrophic dinoflagellates are prevalent protists in marine environments, which play an important role in the carbon cycling and energy flow in the marine planktonic community. Oxyrrhis marina (Dinophyceae), a widespread heterotrophic dinoflagellate, is a model species used for a broad range of ecological, biogeographic, and evolutionary studies. Despite the increasing research effort on this species, there lacks a synthesis of the existing data and a coherent picture of this organism. Here we reviewed the literature to provide an overview of what is known regarding the biology of O. marina, and identify areas where further studies are needed. As an early branch of the dinoflagellate lineage, O. marina shares similarity with typical dinoflagellates in permanent condensed chromosomes, less abundant nucleosome proteins compared to other eukaryotes, multiple gene copies, the occurrence of trans-splicing in nucleus-encoded mRNAs, highly fragmented mitochondrial genome, and disuse of ATG as a start codon for mitochondrial genes. On the other hand, O. marina also exhibits some distinct cytological features (e.g., different flagellar structure, absence of girdle and sulcus or pustules, use of intranuclear spindle in mitosis, presence of nuclear plaque, and absence of birefringent periodic banded chromosomal structure) and genetic features (e.g., a single histone-like DNA-associated protein, cob-cox3 gene fusion, 5′ oligo-U cap in the mitochondrial transcripts of protein-coding genes, the absence of mRNA editing, the presence of stop codon in the fused cob-cox3 mRNA produced by post-transcriptional oligoadenylation, and vestigial plastid genes). The best-studied biology of this dinoflagellate is probably the prey and predators types, which include a wide range of organisms. On the other hand, the abundance of this species in the natural waters and its controlling factors, genome organization and gene expression regulation that underlie the unusual cytological and

  8. Processing of the chemical components of estuarine sediment by the lugworm, Arenicola marina

    NASA Astrophysics Data System (ADS)

    Turner, Andrew; Bishop, Ellen

    2006-06-01

    The ability of the deposit feeder, Arenicola marina, to process components of oxic estuarine sediment has been examined by comparing the chemical composition of freshly-voided faecal casts and surficial ambient sediment. Analysis of C, H and N, and major metals (Al and Fe) and trace metals (Cr, Mn, Co, Ni, Cu, Zn, As, Cd, Pb) was undertaken on the <63 μm fraction of cast-sediment pairs in order to minimise potential effects of grain size variation among samples. In all cases, C, H and N concentrations were lower in biodeposits than in local sediment, and averaged results suggested digestion of between about 15 and 30% of these elements. Nitric acid-extractable metal concentrations in casts and corresponding sediment samples were, in general, analytically indistinguishable. However, after further data normalisation with respect to Al or Fe, casts exhibited slight metal enrichment, presumably because of the weight loss incurred by digestion of (non-metal-bearing) organic matter and the egestion of metals derived from other sources. A protein known to mimic the digestive fluids of A. marina, bovine serum albumin, released between <0.5% (Al, Fe, Mn and Pb) and 15-25% (Cu, Zn and Cd) of acid-soluble metal from both sediment and cast samples. This suggests that, although A. marina is capable of mobilising certain metals in its gut, they tend to re-combine with particles during the formation or egestion of the cast.

  9. A Zostera marina manganese superoxide dismutase gene involved in the responses to temperature stress.

    PubMed

    Liu, Jiao; Tang, Xuexi; Wang, You; Zang, Yu; Zhou, Bin

    2016-01-10

    Superoxide dismutase (SOD) is an essential enzyme playing a pivotal role in the protection mechanism against oxidative stress by reducing superoxide radicals. In the present study, the full-length cDNA sequence of manganese superoxide dismutase was identified from Zostera marina (ZmMnSOD) via raid amplification of cDNA ends (RACE) technique and expressed sequence tags (ESTs) analysis. The open reading frame (ORF) encoded a polypeptide of 254 amino acid residues, which shared 69%-77% similarity with previous identified SODs. Analysis of the deduced amino acid revealed conserved features, including functional domains, signature motifs and metal binding sites. Phylogenetic analysis revealed that ZmMnSOD was closer to the SODs from angiosperm than those from other organisms. The mRNA expression level of ZmMnSOD at different temperatures was investigated using real-time PCR and it was significantly up-regulated from 5°C to 15°C, and then dramatically down-regulated. The recombinant ZmMnSOD protein was purified and exhibited Mn(2+) ions dependency specific enzymatic activity and strong antioxidant activity over a wide temperature range. All these results indicate that ZmMnSOD is an authentic member of the plant SOD family and may play important roles in minimizing the effect of oxidative damage in Z. marina against temperature stress and affect the adaptability of Z. marina to global warming.

  10. A Zostera marina manganese superoxide dismutase gene involved in the responses to temperature stress.

    PubMed

    Liu, Jiao; Tang, Xuexi; Wang, You; Zang, Yu; Zhou, Bin

    2016-01-10

    Superoxide dismutase (SOD) is an essential enzyme playing a pivotal role in the protection mechanism against oxidative stress by reducing superoxide radicals. In the present study, the full-length cDNA sequence of manganese superoxide dismutase was identified from Zostera marina (ZmMnSOD) via raid amplification of cDNA ends (RACE) technique and expressed sequence tags (ESTs) analysis. The open reading frame (ORF) encoded a polypeptide of 254 amino acid residues, which shared 69%-77% similarity with previous identified SODs. Analysis of the deduced amino acid revealed conserved features, including functional domains, signature motifs and metal binding sites. Phylogenetic analysis revealed that ZmMnSOD was closer to the SODs from angiosperm than those from other organisms. The mRNA expression level of ZmMnSOD at different temperatures was investigated using real-time PCR and it was significantly up-regulated from 5°C to 15°C, and then dramatically down-regulated. The recombinant ZmMnSOD protein was purified and exhibited Mn(2+) ions dependency specific enzymatic activity and strong antioxidant activity over a wide temperature range. All these results indicate that ZmMnSOD is an authentic member of the plant SOD family and may play important roles in minimizing the effect of oxidative damage in Z. marina against temperature stress and affect the adaptability of Z. marina to global warming. PMID:26410038

  11. Rhizosphere microbiome metagenomics of gray mangroves (Avicennia marina) in the Red Sea.

    PubMed

    Alzubaidy, Hanin; Essack, Magbubah; Malas, Tareq B; Bokhari, Ameerah; Motwalli, Olaa; Kamanu, Frederick Kinyua; Jamhor, Suhaiza Ahmad; Mokhtar, Noor Azlin; Antunes, André; Simões, Marta Filipa; Alam, Intikhab; Bougouffa, Salim; Lafi, Feras F; Bajic, Vladimir B; Archer, John A C

    2016-02-01

    Mangroves are unique, and endangered, coastal ecosystems that play a vital role in the tropical and subtropical environments. A comprehensive description of the microbial communities in these ecosystems is currently lacking, and additional studies are required to have a complete understanding of the functioning and resilience of mangroves worldwide. In this work, we carried out a metagenomic study by comparing the microbial community of mangrove sediment with the rhizosphere microbiome of Avicennia marina, in northern Red Sea mangroves, along the coast of Saudi Arabia. Our results revealed that rhizosphere samples presented similar profiles at the taxonomic and functional levels and differentiated from the microbiome of bulk soil controls. Overall, samples showed predominance by Proteobacteria, Bacteroidetes and Firmicutes, with high abundance of sulfate reducers and methanogens, although specific groups were selectively enriched in the rhizosphere. Functional analysis showed significant enrichment in 'metabolism of aromatic compounds', 'mobile genetic elements', 'potassium metabolism' and 'pathways that utilize osmolytes' in the rhizosphere microbiomes. To our knowledge, this is the first metagenomic study on the microbiome of mangroves in the Red Sea, and the first application of unbiased 454-pyrosequencing to study the rhizosphere microbiome associated with A. marina. Our results provide the first insights into the range of functions and microbial diversity in the rhizosphere and soil sediments of gray mangrove (A. marina) in the Red Sea. PMID:26475934

  12. Genetic structure of eelgrass Zostera marina meadows in an embayment with restricted water flow

    USGS Publications Warehouse

    Munoz-Salazar, R.; Talbot, S.L.; Sage, G.K.; Ward, D.H.; Cabello-Pasini, Alejandro

    2006-01-01

    Genetic structure of the seagrass Zostera marina in a coastal lagoon with restricted water flow, and with heterogeneous water residence times and oceanographic characteristics, was assessed using 8 polymorphic microsatellite loci. Analyses of genetic differentiation (??) and Bayesian clustering suggested that the Z. marina population in San Quintin Bay (SQB) is genetically substructured, with at least 4 genetically different groups: (1) West Head, (2) Mouth, (3) East Arm, and (4) East Head. The greatest ?? value was observed between the most distant sites (?? = 0.095). The lowest values were found among sites closest to the mouth of the coastal lagoon (?? = 0.000 to 0.009). The maximum likelihood approach showed that the sites at the mouth have a mixed pattern of gene flow without a unidirectional pattern. In contrast, there was a clear pattern of asymmetrical gene flow from the mouth towards the West Head. These results suggested that the restriction of water flow at the heads, current pattern, and the distance between sites can reduce genetic flow and promote genetic differences within Z. marina meadows in small water embayments such as SQB. Though the population is genetically substructured and a 14 % decline in cover has been detected, this study did not show evidence of a recent genetic bottleneck. In contrast, mouth sites have experienced a recent expansion in their population size, and also perhaps a recent influx of rare alleles from genetically distinct immigrants. ?? Inter-Research 2006.

  13. Rhizosphere microbiome metagenomics of gray mangroves (Avicennia marina) in the Red Sea.

    PubMed

    Alzubaidy, Hanin; Essack, Magbubah; Malas, Tareq B; Bokhari, Ameerah; Motwalli, Olaa; Kamanu, Frederick Kinyua; Jamhor, Suhaiza Ahmad; Mokhtar, Noor Azlin; Antunes, André; Simões, Marta Filipa; Alam, Intikhab; Bougouffa, Salim; Lafi, Feras F; Bajic, Vladimir B; Archer, John A C

    2016-02-01

    Mangroves are unique, and endangered, coastal ecosystems that play a vital role in the tropical and subtropical environments. A comprehensive description of the microbial communities in these ecosystems is currently lacking, and additional studies are required to have a complete understanding of the functioning and resilience of mangroves worldwide. In this work, we carried out a metagenomic study by comparing the microbial community of mangrove sediment with the rhizosphere microbiome of Avicennia marina, in northern Red Sea mangroves, along the coast of Saudi Arabia. Our results revealed that rhizosphere samples presented similar profiles at the taxonomic and functional levels and differentiated from the microbiome of bulk soil controls. Overall, samples showed predominance by Proteobacteria, Bacteroidetes and Firmicutes, with high abundance of sulfate reducers and methanogens, although specific groups were selectively enriched in the rhizosphere. Functional analysis showed significant enrichment in 'metabolism of aromatic compounds', 'mobile genetic elements', 'potassium metabolism' and 'pathways that utilize osmolytes' in the rhizosphere microbiomes. To our knowledge, this is the first metagenomic study on the microbiome of mangroves in the Red Sea, and the first application of unbiased 454-pyrosequencing to study the rhizosphere microbiome associated with A. marina. Our results provide the first insights into the range of functions and microbial diversity in the rhizosphere and soil sediments of gray mangrove (A. marina) in the Red Sea.

  14. Habitat suitability analysis of eelgrass Zostera marina L. in the subtidal zone of Xiaoheishan Island

    NASA Astrophysics Data System (ADS)

    Zhou, Jian; Wang, Qixiang; Zhao, Wenxi; Yu, Daode; Guan, Shuguang

    2016-01-01

    We present a GIS-based habitat suitability index (HSI) model to identify suitable areas for Zostera marina L. restoration in the subtidal zone of Xiaoheishan Island. The controlling factors in the model, in order of importance, are Secchi depth, sediment composition, water temperature, salinity, current velocity, water depth and nutrient quality. Specific factor piecewise functions have been used to transform parameter values into normalized quality indexes. The weight of each factor was defined using expert knowledge and the analytic hierarchy process (AHP) method. All of the data thus obtained were interpolated using the inverse distance weighted (IDW) interpolation method to create maps for the entire region. In this study, the analysis of habitat suitability in the subtidal zone of Xiaoheishan Island was conducted for four seasons. According to the GIS-based HSI model, the optimal habitat of Zostera marina L. appears in spring, although habitat remains suitable all year round. On the whole, the optimum site for eelgrass restoration is located in the eastern region, followed by the western and southern regions. We believe that the GIS-based HSI model could be a promising tool to select sites for Zostera marina L. restoration and could also be applicable in other types of habitat evaluation.

  15. De Novo Assembly and Characterization of the Transcriptome of Seagrass Zostera marina Using Illumina Paired-End Sequencing

    PubMed Central

    Kong, Fanna; Li, Hong; Sun, Peipei; Zhou, Yang; Mao, Yunxiang

    2014-01-01

    Background The seagrass Zostera marina is a monocotyledonous angiosperm belonging to a polyphyletic group of plants that can live submerged in marine habitats. Zostera marina L. is one of the most common seagrasses and is considered a cornerstone of marine plant molecular ecology research and comparative studies. However, the mechanisms underlying its adaptation to the marine environment still remain poorly understood due to limited transcriptomic and genomic data. Principal Findings Here we explored the transcriptome of Z. marina leaves under different environmental conditions using Illumina paired-end sequencing. Approximately 55 million sequencing reads were obtained, representing 58,457 transcripts that correspond to 24,216 unigenes. A total of 14,389 (59.41%) unigenes were annotated by blast searches against the NCBI non-redundant protein database. 45.18% and 46.91% of the unigenes had significant similarity with proteins in the Swiss-Prot database and Pfam database, respectively. Among these, 13,897 unigenes were assigned to 57 Gene Ontology (GO) terms and 4,745 unigenes were identified and mapped to 233 pathways via functional annotation against the Kyoto Encyclopedia of Genes and Genomes pathway database (KEGG). We compared the orthologous gene family of the Z. marina transcriptome to Oryza sativa and Pyropia yezoensis and 11,667 orthologous gene families are specific to Z. marina. Furthermore, we identified the photoreceptors sensing red/far-red light and blue light. Also, we identified a large number of genes that are involved in ion transporters and channels including Na+ efflux, K+ uptake, Cl− channels, and H+ pumping. Conclusions Our study contains an extensive sequencing and gene-annotation analysis of Z. marina. This information represents a genetic resource for the discovery of genes related to light sensing and salt tolerance in this species. Our transcriptome can be further utilized in future studies on molecular adaptation to abiotic stress in

  16. A tale of two seagrasses: Comparing the science and management of Zostera marina and Zostera japonica in the Pacific Northwest - CERF

    EPA Science Inventory

    On the Pacific coast of North America, at least two congeners of Zostera occur: native Z. marina, and introduced, Z. japonica. Z. marina is protected by State and Federal laws as essential fish habitat. Z. japonica is considered “invasive” and therefore, ecologicall...

  17. Influence of light, temperature and salinity on dissolved organic carbon exudation rates in Zostera marina L.

    PubMed Central

    2012-01-01

    Background Marine angiosperms, seagrasses, are sentinel species of marine ecosystem health and function. Seagrass carbon budgets provide insight on the minimum requirements needed to maintain this valuable resource. Carbon budgets are a balance between C fixation, growth, storage and loss rates, most of which are well characterized. However, relatively few measurements of dissolved organic carbon (DOC) leaf exudation or rhizodeposition rates exist for most seagrass species. Here I evaluate how eelgrass (Zostera marina L.) DOC exudation is affected by a single factor manipulation (light, temperature or salinity). Eelgrass plants were hydroponically exposed to treatments in experimental chambers (separate leaf and rhizome/root compartments) with artificial seawater medium. Regression analysis of changes in the DOC concentration through time was used to calculate DOC exudation rates. Results Exudation rates were similar across all treatments in all experiments. For all experiments, pooled leaf DOC exudation ranged between 0.032 and 0.069 mg C gdw-1 h-1, while rhizodeposition ranged between 0.024 and 0.045 mg C gdw-1 h-1. These rates are consistent with previously published values and provide first-order estimates for mechanistic models. Conclusions Zostera marina carbon losses from either leaf exudation or rhizodeposition account for a small proportion of gross primary production (1.2-4.6%) and appear to be insensitive to short-term (e.g., hours to days) environmental variations in chamber experiments. Based on these preliminary experiments, I suggest that Z. marina DOC exudation may be a passive process and not an active transport process. PMID:22938529

  18. Light-Promoted Rhodopsin Expression and Starvation Survival in the Marine Dinoflagellate Oxyrrhis marina

    PubMed Central

    Guo, Zhiling; Zhang, Huan; Lin, Senjie

    2014-01-01

    The discovery of microbial rhodopsins in marine proteobacteria changed the dogma that photosynthesis is the only pathway to use the solar energy for biological utilization in the marine environment. Although homologs of these rhodopsins have been identified in dinoflagellates, the diversity of the encoding genes and their physiological roles remain unexplored. As an initial step toward addressing the gap, we conducted high-throughput transcriptome sequencing on Oxyrrhis marina to retrieve rhodopsin transcripts, rapid amplification of cDNA ends to isolate full-length cDNAs of dominant representatives, and quantitative reverse-transcription PCR to investigate their expression under varying conditions. Our phylogenetic analyses showed that O. marina contained both the proton-pumping type (PR) and sensory type (SR) rhodopsins, and the transcriptome data showed that the PR type dominated over the SR type. We compared rhodopsin gene expression for cultures kept under light: dark cycle and continuous darkness in a time course of 24 days without feeding. Although both types of rhodopsin were expressed under the two conditions, the expression levels of PR were much higher than SR, consistent with the transcriptomic data. Furthermore, relative to cultures kept in the dark, rhodopsin expression levels and cell survival rate were both higher in cultures grown in the light. This is the first report of light-dependent promotion of starvation survival and concomitant promotion of PR expression in a eukaryote. While direct evidence needs to come from functional test on rhodopsins in vitro or gene knockout/knockdown experiments, our results suggest that the proton-pumping rhodopsin might be responsible for the light-enhanced survival of O. marina, as previously demonstrated in bacteria. PMID:25506945

  19. Light-promoted rhodopsin expression and starvation survival in the marine dinoflagellate Oxyrrhis marina.

    PubMed

    Guo, Zhiling; Zhang, Huan; Lin, Senjie

    2014-01-01

    The discovery of microbial rhodopsins in marine proteobacteria changed the dogma that photosynthesis is the only pathway to use the solar energy for biological utilization in the marine environment. Although homologs of these rhodopsins have been identified in dinoflagellates, the diversity of the encoding genes and their physiological roles remain unexplored. As an initial step toward addressing the gap, we conducted high-throughput transcriptome sequencing on Oxyrrhis marina to retrieve rhodopsin transcripts, rapid amplification of cDNA ends to isolate full-length cDNAs of dominant representatives, and quantitative reverse-transcription PCR to investigate their expression under varying conditions. Our phylogenetic analyses showed that O. marina contained both the proton-pumping type (PR) and sensory type (SR) rhodopsins, and the transcriptome data showed that the PR type dominated over the SR type. We compared rhodopsin gene expression for cultures kept under light: dark cycle and continuous darkness in a time course of 24 days without feeding. Although both types of rhodopsin were expressed under the two conditions, the expression levels of PR were much higher than SR, consistent with the transcriptomic data. Furthermore, relative to cultures kept in the dark, rhodopsin expression levels and cell survival rate were both higher in cultures grown in the light. This is the first report of light-dependent promotion of starvation survival and concomitant promotion of PR expression in a eukaryote. While direct evidence needs to come from functional test on rhodopsins in vitro or gene knockout/knockdown experiments, our results suggest that the proton-pumping rhodopsin might be responsible for the light-enhanced survival of O. marina, as previously demonstrated in bacteria.

  20. Photosystem Trap Energies and Spectrally-Dependent Energy-Storage Efficiencies in the Chl d-Utilizing Cyanobacterium, Acaryochloris Marina

    NASA Technical Reports Server (NTRS)

    Mielke, Steven P.; Kiang, Nancy Y.; Blankenship, Robert E.; Mauzerall, David

    2012-01-01

    Acaryochloris marina is the only species known to utilize chlorophyll (Chl) d as a principal photopigment. The peak absorption wavelength of Chl d is redshifted approx. 40 nm in vivo relative to Chl a, enabling this cyanobacterium to perform oxygenic phototrophy in niche environments enhanced in far-red light. We present measurements of the in vivo energy-storage (E-S) efficiency of photosynthesis in A. marina, obtained using pulsed photoacoustics (PA) over a 90-nm range of excitation wavelengths in the red and far-red. Together with modeling results, these measurements provide the first direct observation of the trap energies of PSI and PSII, and also the photosystem-specific contributions to the total E-S efficiency. We find the maximum observed efficiency in A. marina (40+/-1% at 735 nm) is higher than in the Chl a cyanobacterium Synechococcus leopoliensis (35+/-1% at 690 nm). The efficiency at peak absorption wavelength is also higher in A. marina (36+/-1% at 710 nm vs. 31+/-1% at 670 nm). In both species, the trap efficiencies are approx. 40% (PSI) and approx. 30% (PSII). The PSI trap in A. marina is found to lie at 740+/-5 nm, in agreement with the value inferred from spectroscopic methods. The best fit of the model to the PA data identifies the PSII trap at 723+/-3 nm, supporting the view that the primary electron-donor is Chl d, probably at the accessory (ChlD1) site. A decrease in efficiency beyond the trap wavelength, consistent with uphill energy transfer, is clearly observed and fit by the model. These results demonstrate that the E-S efficiency in A. marina is not thermodynamically limited, suggesting that oxygenic photosynthesis is viable in even redder light environments.

  1. Biofilm Growth and Near-Infrared Radiation-Driven Photosynthesis of the Chlorophyll d-Containing Cyanobacterium Acaryochloris marina

    PubMed Central

    Behrendt, Lars; Schrameyer, Verena; Qvortrup, Klaus; Lundin, Luisa; Sørensen, Søren J.; Larkum, Anthony W. D.

    2012-01-01

    The cyanobacterium Acaryochloris marina is the only known phototroph harboring chlorophyll (Chl) d. It is easy to cultivate it in a planktonic growth mode, and A. marina cultures have been subject to detailed biochemical and biophysical characterization. In natural situations, A. marina is mainly found associated with surfaces, but this growth mode has not been studied yet. Here, we show that the A. marina type strain MBIC11017 inoculated into alginate beads forms dense biofilm-like cell clusters, as in natural A. marina biofilms, characterized by strong O2 concentration gradients that change with irradiance. Biofilm growth under both visible radiation (VIS, 400 to 700 nm) and near-infrared radiation (NIR, ∼700 to 730 nm) yielded maximal cell-specific growth rates of 0.38 per day and 0.64 per day, respectively. The population doubling times were 1.09 and 1.82 days for NIR and visible light, respectively. The photosynthesis versus irradiance curves showed saturation at a photon irradiance of Ek (saturating irradiance) >250 μmol photons m−2 s−1 for blue light but no clear saturation at 365 μmol photons m−2 s−1 for NIR. The maximal gross photosynthesis rates in the aggregates were ∼1,272 μmol O2 mg Chl d−1 h−1 (NIR) and ∼1,128 μmol O2 mg Chl d−1 h−1 (VIS). The photosynthetic efficiency (α) values were higher in NIR-irradiated cells [(268 ± 0.29) × 10−6 m2 mg Chl d−1 (mean ± standard deviation)] than under blue light [(231 ± 0.22) × 10−6 m2 mg Chl d−1]. A. marina is well adapted to a biofilm growth mode under both visible and NIR irradiance and under O2 conditions ranging from anoxia to hyperoxia, explaining its presence in natural niches with similar environmental conditions. PMID:22467501

  2. Nutrient and caloric dynamics in Avicennia marina leaves at different developmental and decay stages in Zhangjiang River Estuary, China

    NASA Astrophysics Data System (ADS)

    Zhou, Hai-Chao; Wei, Shu-Dong; Zeng, Qi; Zhang, Li-Hua; Tam, Nora Fung-yee; Lin, Yi-Ming

    2010-03-01

    Avicennia marina is a typical mangrove species in the subtropical coastlines of China. The main objective of this study was to assess nutrient and caloric dynamics in A. marina leaves at different developmental and decay stages. Decomposition studies using litter bags suggested that the time required for the loss of half of the initial dry weight ( t50) was 19 days. The extracts of A. marina leaves contained non-tannin phenolics and tannin phenolics (hydrolysable tannin), but no condensed tannin. Non-tannin phenolics and tannin phenolics contents did not differ significantly from each other at various developmental stages, but decreased rapidly during leaf decomposition. Avicennia marina leaves had high N levels, and both N and P concentrations decreased significantly during senescence. During decomposition, N concentration of the leaf litter increased gradually but the phosphorus concentration showed a decrease in the first week, and both N and P remained the same towards the end of the experiment. The gross caloric value (GCV) of mature leaves was significantly higher than those of young and senescent leaves, while ash-free caloric value (AFCV) did not change significantly during leaf development and senescence. During leaf decomposition, both GCV and AFCV increased gradually and remained the same at late stages. In subtropical Zhangjiang River Estuary, high N levels and lack of condensed tannins in A. marina leaves were responsible for the fast rate of decay. Non-tannin phenolics and tannin phenolics had no great effect on rate of decay. Nitrogen resorption during leaf senescence, and high litter decomposition followed by nitrogen immobilization are the important nutrient conservation strategy for A. marina.

  3. Foleyellides rhinellae sp. nov. (Nematoda, Onchocercidae) a new filaria parasitizing Rhinella marina (Anura, Bufonidae) in Mexico.

    PubMed

    García-Prieto, Luis; Ruiz-Torres, Nallely; Osorio-Sarabia, David; Merlo-Serna, Aldo

    2014-09-01

    A new nematode species, Foleyellides rhinellae sp. nov. (Onchocercidae), is described from specimens found in the body cavity of the cane toad, Rhinella marina (Linnaeus) (Anura, Bufonidae), in the Laguna de Coyuca, Guerrero, in the Pacific slope of Mexico. The new species differs from the other nine species of Foleyellides by infecting bufonid anurans and by the number and arrangement of caudal papillae. Other distinguishing feature of the new species is the size of the left spicule (0.16-0.23 long), the smallest recorded among the species included in the genus. Foleyellides rhinellae sp. nov. is the second known species of the genus recorded from amphibians of Mexico.

  4. Two Unrelated 8-Vinyl Reductases Ensure Production of Mature Chlorophylls in Acaryochloris marina

    PubMed Central

    Chen, Guangyu E.; Hitchcock, Andrew; Jackson, Philip J.; Chaudhuri, Roy R.; Dickman, Mark J.; Hunter, C. Neil

    2016-01-01

    ABSTRACT The major photopigment of the cyanobacterium Acaryochloris marina is chlorophyll d, while its direct biosynthetic precursor, chlorophyll a, is also present in the cell. These pigments, along with the majority of chlorophylls utilized by oxygenic phototrophs, carry an ethyl group at the C-8 position of the molecule, having undergone reduction of a vinyl group during biosynthesis. Two unrelated classes of 8-vinyl reductase involved in the biosynthesis of chlorophylls are known to exist, BciA and BciB. The genome of Acaryochloris marina contains open reading frames (ORFs) encoding proteins displaying high sequence similarity to BciA or BciB, although they are annotated as genes involved in transcriptional control (nmrA) and methanogenesis (frhB), respectively. These genes were introduced into an 8-vinyl chlorophyll a-producing ΔbciB strain of Synechocystis sp. strain PCC 6803, and both were shown to restore synthesis of the pigment with an ethyl group at C-8, demonstrating their activities as 8-vinyl reductases. We propose that nmrA and frhB be reassigned as bciA and bciB, respectively; transcript and proteomic analysis of Acaryochloris marina reveal that both bciA and bciB are expressed and their encoded proteins are present in the cell, possibly in order to ensure that all synthesized chlorophyll pigment carries an ethyl group at C-8. Potential reasons for the presence of two 8-vinyl reductases in this strain, which is unique for cyanobacteria, are discussed. IMPORTANCE The cyanobacterium Acaryochloris marina is the best-studied phototrophic organism that uses chlorophyll d for photosynthesis. Unique among cyanobacteria sequenced to date, its genome contains ORFs encoding two unrelated enzymes that catalyze the reduction of the C-8 vinyl group of a precursor molecule to an ethyl group. Carrying a reduced C-8 group may be of particular importance to organisms containing chlorophyll d. Plant genomes also contain orthologs of both of these genes; thus, the

  5. Burial of Zostera marina seeds in sediment inhabited by three polychaetes: Laboratory and field studies

    NASA Astrophysics Data System (ADS)

    Delefosse, M.; Kristensen, E.

    2012-07-01

    The large number of seeds produced by eelgrass, Zostera marina, provides this plant with a potential to disperse widely and colonise new areas. After dispersal, seeds must be buried into sediment for assuring long-term survival, successful germination and safe seedling development. Seeds may be buried passively by sedimentation or actively through sediment reworking by benthic fauna. We evaluated the effect of three polychaetes on the burial rate and depth of eelgrass seeds. Burial was first measured in controlled laboratory experiments using different densities of Nereis (Hediste) diversicolor (400-3200 ind m- 2), Arenicola marina (20-80 ind m- 2), and the invasive Marenzelleria viridis (400-1600 ind m- 2). The obtained results were subsequently compared with burial rates of seed mimics in experimental field plots (1 m2) dominated by the respective polychaetes. High recovery of seeds in the laboratory (97-100%) suggested that none of these polychaetes species feed on eelgrass seeds. N. diversicolor transported seeds rapidly (< 1 day) into its burrow, where they remained buried at a median depth of 0.5 cm. A. marina and M. viridis buried seeds by depositing their faeces on top of the sediment. At their highest abundance, A. marina and M. viridis buried seeds to a median depth of 6.7 cm and 0.5 cm, respectively, after a month. The burial efficiency and depth of these species were, in contrast to N. diversicolor, dependent on animal abundance. Only 2% of seed mimics casted in the field plots were recovered, suggesting that physical dispersion by waves and currents was considerably important for horizontal distribution. However, polychaete affected significantly the vertical distribution of seeds. Overall the effects of these three polychaetes indicate that benthic macroinvertebrates may significantly impact eelgrass seed bank at the ecosystem scale. Some species have a positive effect by burying seeds to shallow depths and thereby reducing seed predation and

  6. Morphological characterization of Eustrongylides sp. larvae (Nematoda, Dioctophymatoidea) parasite of Rhinella marina (Amphibia: Bufonidae) from Eastern Amazonia.

    PubMed

    Melo, Francisco Tiago de Vasconcelos; Melo, Caroline do Socorro Barros; Nascimento, Luciana de Cássia Silva do; Giese, Elane Guerreiro; Furtado, Adriano Penha; Santos, Jeannie Nascimento Dos

    2016-06-01

    Absctract Eustrongylides spp. nematodes have birds as final hosts and uses other vertebrates as intermediate/paratenic host (fish, amphibians and reptiles) and have zoonotic potential. In amphibians, the larvae may be located in the subcutaneous tissues, liver and mesentery, between the muscle fibres, especially in the lower limbs. Rhinella marina, which is widely observed in Brazil, has exhibited complex diversity in its helminth fauna, reflecting the unique habitat of the Amazon biome. For the first time, this study describes the morphological aspects of third-stage larvae of Eustrongylides sp. in Rhinella marina from Santa Cruz do Ararí, Marajó Archipelago, Eastern Amazonia, using light and scanning electron microscopy.

  7. The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea.

    PubMed

    Olsen, Jeanine L; Rouzé, Pierre; Verhelst, Bram; Lin, Yao-Cheng; Bayer, Till; Collen, Jonas; Dattolo, Emanuela; De Paoli, Emanuele; Dittami, Simon; Maumus, Florian; Michel, Gurvan; Kersting, Anna; Lauritano, Chiara; Lohaus, Rolf; Töpel, Mats; Tonon, Thierry; Vanneste, Kevin; Amirebrahimi, Mojgan; Brakel, Janina; Boström, Christoffer; Chovatia, Mansi; Grimwood, Jane; Jenkins, Jerry W; Jueterbock, Alexander; Mraz, Amy; Stam, Wytze T; Tice, Hope; Bornberg-Bauer, Erich; Green, Pamela J; Pearson, Gareth A; Procaccini, Gabriele; Duarte, Carlos M; Schmutz, Jeremy; Reusch, Thorsten B H; Van de Peer, Yves

    2016-02-18

    Seagrasses colonized the sea on at least three independent occasions to form the basis of one of the most productive and widespread coastal ecosystems on the planet. Here we report the genome of Zostera marina (L.), the first, to our knowledge, marine angiosperm to be fully sequenced. This reveals unique insights into the genomic losses and gains involved in achieving the structural and physiological adaptations required for its marine lifestyle, arguably the most severe habitat shift ever accomplished by flowering plants. Key angiosperm innovations that were lost include the entire repertoire of stomatal genes, genes involved in the synthesis of terpenoids and ethylene signalling, and genes for ultraviolet protection and phytochromes for far-red sensing. Seagrasses have also regained functions enabling them to adjust to full salinity. Their cell walls contain all of the polysaccharides typical of land plants, but also contain polyanionic, low-methylated pectins and sulfated galactans, a feature shared with the cell walls of all macroalgae and that is important for ion homoeostasis, nutrient uptake and O2/CO2 exchange through leaf epidermal cells. The Z. marina genome resource will markedly advance a wide range of functional ecological studies from adaptation of marine ecosystems under climate warming, to unravelling the mechanisms of osmoregulation under high salinities that may further inform our understanding of the evolution of salt tolerance in crop plants.

  8. Understanding the Ecoydrology of Mangroves: A Simple SPAC Model for Avicennia Marina

    NASA Astrophysics Data System (ADS)

    Perri, Saverio; Viola, Francesco; Valerio Noto, Leonardo; Molini, Annalisa

    2015-04-01

    Mangroves represent one of the most carbon-rich ecosystems in the Tropics, noticeably impacting ecosystem services and the economy of these regions. Whether the ability of mangroves to exclude and tolerate salt has been extensively investigated in the literature - both from the structural and functional point of view - their eco-hydrological characteristics remains largely understudied, despite the crucial link with productivity, efficient carbon storage and fluxes. In this contribution we develop a "first-order" Soil Plant Atmosphere Continuum model for Avicennia Marina, a mangrove able to adapt to hyper-arid intertidal zones and characterized by complex morphological and eco-physiological traits. Among mangroves, Avicennia marina is one of the most tolerant to salinity and arid climatic conditions. Our model, based on a simple macroscopic approach, takes into account the specific characteristics of the mangrove ecosystem and in particular, the salinity of the water in the soil and the levels of salt stress to which the plant may be subjected. Mangrove transpiration is hence obtained by solving the plant and leaf water balance and the leaf energy balance, taking explicitly into account the role of osmotic water potential and salinity in governing plant resistance to water fluxes. The SPAC model of Avicennia is hence tested against experimental data obtained from the literature, showing the reliability and effectiveness of this minimalist model in reproducing observed transpiration fluxes. Finally, sensitivity analysis is used to assess whether uncertainty on the adopted parameters could lead to significant errors in the transpiration assessment.

  9. Endotoxin Structures in the Psychrophiles Psychromonas marina and Psychrobacter cryohalolentis Contain Distinctive Acyl Features

    PubMed Central

    Sweet, Charles R.; Alpuche, Giancarlo M.; Landis, Corinne A.; Sandman, Benjamin C.

    2014-01-01

    Lipid A is the essential component of endotoxin (Gram-negative lipopolysaccharide), a potent immunostimulatory compound. As the outer surface of the outer membrane, the details of lipid A structure are crucial not only to bacterial pathogenesis but also to membrane integrity. This work characterizes the structure of lipid A in two psychrophiles, Psychromonas marina and Psychrobacter cryohalolentis, and also two mesophiles to which they are related using MALDI-TOF MS and fatty acid methyl ester (FAME) GC-MS. P. marina lipid A is strikingly similar to that of Escherichia coli in organization and total acyl size, but incorporates an unusual doubly unsaturated tetradecadienoyl acyl residue. P. cryohalolentis also shows structural organization similar to a closely related mesophile, Acinetobacter baumannii, however it has generally shorter acyl constituents and shows many acyl variants differing by single methylene (-CH2-) units, a characteristic it shares with the one previously reported psychrotolerant lipid A structure. This work is the first detailed structural characterization of lipid A from an obligate psychrophile and the second from a psychrotolerant species. It reveals distinctive structural features of psychrophilic lipid A in comparison to that of related mesophiles which suggest constitutive adaptations to maintain outer membrane fluidity in cold environments. PMID:25010385

  10. Rhizodegradation potential and tolerance of Avicennia marina (Forsk.) Vierh in phenanthrene and pyrene contaminated sediments.

    PubMed

    Jia, Hui; Wang, He; Lu, Haoliang; Jiang, Shan; Dai, Minyue; Liu, Jingchun; Yan, Chongling

    2016-09-15

    A pot experiment was conducted to investigate the dissipation of phenanthrene and pyrene in spiked sediments with presence of Avicennia marina (Forsk.) Vierh. The rhizosphere environment was set up using a self-design nylon rhizo-bag which divided the sediment into the rhizosphere and non-rhizosphere. Results showed that the dissipation of phenanthrene and pyrene were significantly enhanced in the rhizosphere compared with non-rhizosphere sediments. Plant roots promoted dissipation significantly greater than the contribution of direct plant uptake and accumulation of phenanthrene and pyrene. The activities of antioxidant and detoxification enzymes in roots and leaves significantly increased against oxidative stress with increasing PAH concentrations. Furthermore, a significant relationship (R(2)>0.91) between dissolved organic carbon (DOC) concentrations and the residual of PAHs in rhizosphere and non-rhizosphere sediments was observed after 120days planting. Results indicated that rhizome mediation with A. marina is a useful approach to promote the depletion of PAHs in contaminated mangrove sediments. PMID:27373941

  11. Genome sequence of the ocean sediment bacterium Saccharomonospora marina type strain (XMU15T)

    SciTech Connect

    Klenk, Hans-Peter; Lu, Megan; Lucas, Susan; Copeland, A; Pitluck, Sam; Goodwin, Lynne A.; Han, Cliff; Tapia, Roxanne; Brambilla, Evelyne-Marie; Potter, Gabriele; Land, Miriam L; Ivanova, N; Rohde, Manfred; Goker, Markus; Detter, J. Chris; Li, Wen-Jun; Kyrpides, Nikos C; Woyke, Tanja

    2012-01-01

    Saccharomonospora marina Liu et al. 2010 is a member to the genomically so far poorly characterized genus Saccharomonospora in the family Pseudonocardiaceae. Members of the genus Sacharomonospora are of interest because they originate from diverse habitats, such as leaf litter, manure, compost, surface of peat, moist, over-heated grain, and ocean sediment, where they might play a role in the primary degradation of plant material by attacking hemicellulose. Organisms belonging to the genus are usually Gram-positive staining, non-acid fast, and classify among the actinomycetes. Next to S. viridis and S. azurea, S. marina is the third member in the genus Saccharomonospora for with a completely sequenced (permanent draft status) type strain genome will be published. Here we describe the features of this organism, together with the complete genome sequence, and annotation. The 5,965,593 bp long chromosome with its 5,727 protein-coding and 57 RNA genes was sequenced as part of the DOE funded Community Sequencing Program (CSP) 2010 at the Joint Genome Institute (JGI).

  12. A biliverdin-binding cyanobacteriochrome from the chlorophyll d-bearing cyanobacterium Acaryochloris marina.

    PubMed

    Narikawa, Rei; Nakajima, Takahiro; Aono, Yuki; Fushimi, Keiji; Enomoto, Gen; Ni-Ni-Win; Itoh, Shigeru; Sato, Moritoshi; Ikeuchi, Masahiko

    2015-01-01

    Cyanobacteriochromes (CBCRs) are linear tetrapyrrole-binding photoreceptors in cyanobacteria that absorb visible and near-ultraviolet light. CBCRs are divided into two types based on the type of chromophore they contain: phycocyanobilin (PCB) or phycoviolobilin (PVB). PCB-binding CBCRs reversibly photoconvert at relatively long wavelengths, i.e., the blue-to-red region, whereas PVB-binding CBCRs reversibly photoconvert at shorter wavelengths, i.e., the near-ultraviolet to green region. Notably, prior to this report, CBCRs containing biliverdin (BV), which absorbs at longer wavelengths than do PCB and PVB, have not been found. Herein, we report that the typical red/green CBCR AM1_1557 from the chlorophyll d-bearing cyanobacterium Acaryochloris marina can bind BV almost comparable to PCB. This BV-bound holoprotein reversibly photoconverts between a far red light-absorbing form (Pfr, λmax = 697 nm) and an orange light-absorbing form (Po, λmax = 622 nm). At room temperature, Pfr fluoresces with a maximum at 730 nm. These spectral features are red-shifted by 48~77 nm compared with those of the PCB-bound domain. Because the absorbance of chlorophyll d is red-shifted compared with that of chlorophyll a, the BV-bound AM1_1557 may be a physiologically relevant feature of A. marina and is potentially useful as an optogenetic switch and/or fluorescence imager. PMID:25609645

  13. A biliverdin-binding cyanobacteriochrome from the chlorophyll d–bearing cyanobacterium Acaryochloris marina

    PubMed Central

    Narikawa, Rei; Nakajima, Takahiro; Aono, Yuki; Fushimi, Keiji; Enomoto, Gen; Ni-Ni-Win; Itoh, Shigeru; Sato, Moritoshi; Ikeuchi, Masahiko

    2015-01-01

    Cyanobacteriochromes (CBCRs) are linear tetrapyrrole-binding photoreceptors in cyanobacteria that absorb visible and near-ultraviolet light. CBCRs are divided into two types based on the type of chromophore they contain: phycocyanobilin (PCB) or phycoviolobilin (PVB). PCB-binding CBCRs reversibly photoconvert at relatively long wavelengths, i.e., the blue-to-red region, whereas PVB-binding CBCRs reversibly photoconvert at shorter wavelengths, i.e., the near-ultraviolet to green region. Notably, prior to this report, CBCRs containing biliverdin (BV), which absorbs at longer wavelengths than do PCB and PVB, have not been found. Herein, we report that the typical red/green CBCR AM1_1557 from the chlorophyll d–bearing cyanobacterium Acaryochloris marina can bind BV almost comparable to PCB. This BV-bound holoprotein reversibly photoconverts between a far red light–absorbing form (Pfr, λmax = 697 nm) and an orange light–absorbing form (Po, λmax = 622 nm). At room temperature, Pfr fluoresces with a maximum at 730 nm. These spectral features are red-shifted by 48~77 nm compared with those of the PCB-bound domain. Because the absorbance of chlorophyll d is red-shifted compared with that of chlorophyll a, the BV-bound AM1_1557 may be a physiologically relevant feature of A. marina and is potentially useful as an optogenetic switch and/or fluorescence imager. PMID:25609645

  14. Transcriptomic resilience to global warming in the seagrass Zostera marina, a marine foundation species

    PubMed Central

    Franssen, Susanne U.; Gu, Jenny; Bergmann, Nina; Winters, Gidon; Klostermeier, Ulrich C.; Rosenstiel, Philip; Bornberg-Bauer, Erich; Reusch, Thorsten B. H.

    2011-01-01

    Large-scale transcription profiling via direct cDNA sequencing provides important insights as to how foundation species cope with increasing climatic extremes predicted under global warming. Species distributed along a thermal cline, such as the ecologically important seagrass Zostera marina, provide an opportunity to assess temperature effects on gene expression as a function of their long-term adaptation to heat stress. We exposed a southern and northern European population of Zostera marina from contrasting thermal environments to a realistic heat wave in a common-stress garden. In a fully crossed experiment, eight cDNA libraries, each comprising ∼125 000 reads, were obtained during and after a simulated heat wave, along with nonstressed control treatments. Although gene-expression patterns during stress were similar in both populations and were dominated by classical heat-shock proteins, transcription profiles diverged after the heat wave. Gene-expression patterns in southern genotypes returned to control values immediately, but genotypes from the northern site failed to recover and revealed the induction of genes involved in protein degradation, indicating failed metabolic compensation to high sea-surface temperature. We conclude that the return of gene-expression patterns during recovery provides critical information on thermal adaptation in aquatic habitats under climatic stress. As a unifying concept for ecological genomics, we propose transcriptomic resilience, analogous to ecological resilience, as an important measure to predict the tolerance of individuals and hence the fate of local populations in the face of global warming. PMID:22084086

  15. Glycolipid biosynthesis in cyanobacteria. [Anabaena variabilis; Chlorogloeopsis sp. ; Schizothrix calcicola; Anacystis nidulans; Anacystis marina

    SciTech Connect

    Van Dusen, W.J.; Jaworski, J.G.

    1987-05-01

    The biosynthesis of monogalactosyldiacyl-glycerol (MGDG) was studied in five different cyanobacteria. Previous work has shown Anabaena variabilis to synthesize both MGDG and monoglucosyl-diacylglycerol (MG1cDG) with MG1cDG being the precursor of MGDG. They have examined four other cyanobacteria to determine if a similar relationship exists. The cyanobacteria studied were Anabaena variabilis, Chlorogloeopsis sp., Schizothrix calcicola, Anacystis nidulans, and Anacystis marina. Each were grown in liquid culture and lipids were labeled with /sup 14/C)CO/sub 2/ for 20 min., 1.0 hr, 1.0 hr + 10 hr chase. Glycolipids were analyzed by initial separation of MGDG and MG1cDG by TLC followed by further analysis by HPLC. Complete separation of molecular species was obtained isocratically on an ODS column. All of the cyanobacteria labeled 16-C and 18-C fatty acids except for A. marina which labeled only 14-C and 16-C fatty acids. Desaturation of the fatty acids could be observed in the 1.0 hr and chase experiments. All were capable of labeling both MG1cDG and MGDG with the precursor-product relationship being observed. There does not appear to be a direct relationship between the epimerization of the sugar moiety and fatty acid desaturation.

  16. Impact of tail-nipping on mortality, growth and reproduction of Arenicola marina

    NASA Astrophysics Data System (ADS)

    Bergman, Magda J. N.; Van Der Veer, Henk W.; Karczmarski, Leszek

    The impact of predation by amputation of regenerating body parts (tail tips) of the lugworm Arenicola marina on species mortality, growth and reproduction has been studied under laboratory conditions by the artificial removal of tail tips at different frequencies. The loss of body weight by amputation was not compensated for by an increased growth. Within a wide range of amputation frequencies, total growth (body growth + amount of tail tip amputated) and reproduction of the lugworm were not affected. Also, both egg development and amount of energy stored in reproduction remained the same. Only at the highest frequency of amputation (once a week) did total growth decrease in the course of time, resulting even in a loss of body weight. The amount of energy stored in reproduction was also significantly less at the highest rate of amputation. Lugworms appeared to be unable to sustain this high level of amputation and the anaerobic sediment conditions in the cuvettes suggest a reduced pumping activity and food intake. Mortality in this group was also higher than in the other groups. The consequences of tail-nipping by flatfish for A. marina in the field situation are discussed.

  17. Effects of barium and cadmium on the population development of the marine nematode Rhabditis (Pellioditis) marina.

    PubMed

    Lira, V F; Santos, G A P; Derycke, S; Larrazabal, M E L; Fonsêca-Genevois, V G; Moens, T

    2011-10-01

    Offshore oil and gas drilling often involves the use of fluids containing barium and traces of other heavy metals. These may affect the environment, but information on their toxicity to benthic biota remains scant. Here, we present results of a 10-day bioassay with the marine nematode Rhabditis (Pellioditis) marina at different loads of barium (0-10 ,000 ppm nominal concentrations) and cadmium (0-12 ppm) in the range of concentrations reported from drilling-impacted sediments. Barium did not affect the fitness and population development of R. (P.) marina at concentrations up to 300 ppm, but did cause a decrease in population abundance and an increase in development time from concentrations of 400-2000 ppm onwards. Increased mortality occurred at 4800 ppm Ba. For cadmium, LOEC and EC₅₀ values for total population abundance were 2.95 and 8.82 ppm, respectively. Cd concentrations as low as 2.40 to 2.68 caused a decrease in the abundance of adult nematodes, indicating that assays covering more generations would likely demonstrate yet more pronounced population-level effects. Our results indicate that oil and gas drilling activities may potentially have important implications for the meiobenthos through the toxicity of barium and associated metals like cadmium.

  18. Effects of microplastic on fitness and PCB bioaccumulation by the lugworm Arenicola marina (L.).

    PubMed

    Besseling, Ellen; Wegner, Anna; Foekema, Edwin M; van den Heuvel-Greve, Martine J; Koelmans, Albert A

    2013-01-01

    It has been speculated that marine microplastics may cause negative effects on benthic marine organisms and increase bioaccumulation of persistent organic pollutants (POPs). Here, we provide the first controlled study of plastic effects on benthic organisms including transfer of POPs. The effects of polystyrene (PS) microplastic on survival, activity, and bodyweight, as well as the transfer of 19 polychlorinated biphenyls (PCBs), were assessed in bioassays with Arenicola marina (L.). PS was pre-equilibrated in natively contaminated sediment. A positive relation was observed between microplastic concentration in the sediment and both uptake of plastic particles and weight loss by A. marina. Furthermore, a reduction in feeding activity was observed at a PS dose of 7.4% dry weight. A low PS dose of 0.074% increased bioaccumulation of PCBs by a factor of 1.1-3.6, an effect that was significant for ΣPCBs and several individual congeners. At higher doses, bioaccumulation decreased compared to the low dose, which however, was only significant for PCB105. PS had statistically significant effects on the organisms' fitness and bioaccumulation, but the magnitude of the effects was not high. This may be different for sites with different plastic concentrations, or plastics with a higher affinity for POPs.

  19. Radiocarbon isotopic evidence for assimilation of atmospheric CO2 by the seagrass Zostera marina

    NASA Astrophysics Data System (ADS)

    Watanabe, K.; Kuwae, T.

    2015-10-01

    Submerged aquatic vegetation takes up water-column dissolved inorganic carbon (DIC) as a carbon source across its thin cuticle layer. It is expected that marine macrophytes also use atmospheric CO2 when exposed to air during low tide, although assimilation of atmospheric CO2 has never been quantitatively evaluated. Using the radiocarbon isotopic signatures (Δ14C) of the seagrass Zostera marina, DIC and particulate organic carbon (POC), we show quantitatively that Z. marina takes up and assimilates atmospheric modern CO2 in a shallow coastal ecosystem. The Δ14C values of the seagrass (-40 to -10 ‰) were significantly higher than those of aquatic DIC (-46 to -18 ‰), indicating that the seagrass uses a 14C-rich carbon source (atmospheric CO2, +17 ‰). A carbon-source mixing model indicated that the seagrass assimilated 0-40 % (mean, 17 %) of its inorganic carbon as atmospheric CO2. CO2 exchange between the air and the seagrass might be enhanced by the presence of a very thin film of water over the air-exposed leaves during low tide. Our radiocarbon isotope analysis, showing assimilation of atmospheric modern CO2 as an inorganic carbon source, improves our understanding of the role of seagrass meadows in coastal carbon dynamics.

  20. Fungi and Bacteria in or on Leaves of Eelgrass (Zostera marina L.) from Chesapeake Bay.

    PubMed

    Newell, S Y

    1981-05-01

    Samples of green and brown leaves of eelgrass (Zostera marina L.) were incubated in seawater without an additional carbon source. Parallel leaf samples were used for acridine orange bacterial counting and water-soluble aniline blue estimation of fungal biovolume. The incubations produced no evidence that there is an eelgrass counterpart for the chytridialean symbiont which is very common in turtlegrass (Thalassia testudinum König). Sterile mycelium (i.e., living mycelium without identifiable propagules) was the most prevalent fungal form on incubated samples from submerged sites, whereas Dendryphiella salina and Sigmoidea sp. (marina?) were prevalent on brown leaves from the wrack line. Attempts to assay fungal biovolume in field samples indicated that the sterile mycelium observed after incubation represented the outgrowth of formerly dormant propagules or weakly established microcolonies. It was calculated that fungal biomass could not account for more than 0.5% of leaf mass, and it was probably much smaller than this, for no fungal structures were observed even in concentrated leaf homogenates. Bacterial densities fell within the range reported for other particulate substrates. A speculative estimate of bacterial productivity was 1.4x the standing stock per day.

  1. Microplastics are taken up by mussels (Mytilus edulis) and lugworms (Arenicola marina) living in natural habitats.

    PubMed

    Van Cauwenberghe, Lisbeth; Claessens, Michiel; Vandegehuchte, Michiel B; Janssen, Colin R

    2015-04-01

    We studied the uptake of microplastics under field conditions. At six locations along the French-Belgian-Dutch coastline we collected two species of marine invertebrates representing different feeding strategies: the blue mussel Mytilus edulis (filter feeder) and the lugworm Arenicola marina (deposit feeder). Additional laboratory experiments were performed to assess possible (adverse) effects of ingestion and translocation of microplastics on the energy metabolism (cellular energy allocation) of these species. Microplastics were present in all organisms collected in the field: on average 0.2 ± 0.3 microplastics g(-1) (M. edulis) and 1.2 ± 2.8 particles g(-1) (A. marina). In a proof of principle laboratory experiment, mussels and lugworms exposed to high concentrations of polystyrene microspheres (110 particles mL(-1) seawater and 110 particles g(-1) sediment, respectively) showed no significant adverse effect on the organisms' overall energy budget. The results are discussed in the context of possible risks as a result of the possible transfer of adsorbed contaminants. PMID:25617854

  2. Easy visualization of the protist Oxyrrhis marina grazing on a live fluorescently labelled heterotrophic nanoflagellate.

    PubMed

    Martín-Cereceda, Mercedes; Williams, Richard A J; Novarino, Gianfranco

    2008-07-01

    Planktonic heterotrophic flagellates are ubiquitous eukaryotic microorganisms that play a crucial role in carbon and nutrient fluxes through pelagic food webs. Here we illustrate for the first time a grazing model of planktonic dinoflagellate, Oxyrrhis marina, on the heterotrophic nanoflagellate Goniomonas amphinema, using the DNA-binding fluorescent dye Hoechst 33342. A solution of 1 microg/mL of the fluorochrome allowed viability of the prey for at least 48 hours, provided low fluorescence quenching, and labelled the flagellate without masking the cytoplasm. After 2 hours of contact between the fluorescent prey and the predator, O. marina population had preyed on live G. amphinema at an ingestion rate of 2.2 prey Oxyrrhis (-1) h(-1). Results show that this model is a time-effective and inexpensive approach for the direct observation of heterotrophic flagellate grazing. The fact that prey remain alive while predation occurs, as well as the low rate of quenching, could be of help in studying the fate of real-time trophic interactions between protists in microbial webs.

  3. Inhibitory Activity of Avicennia marina, a Medicinal Plant in Persian Folk Medicine, against HIV and HSV.

    PubMed

    Namazi, Rahele; Zabihollahi, Rezvan; Behbahani, Mandana; Rezaei, Abbas

    2013-01-01

    Avicennia marina (Avicenniaceae) is a species of mangrove tree used for treatment of small pox lesions in Persian folk medicine. The antiviral activity of methanol, ethanol, water, chloroform and n-hexane extracts was evaluated against HIV-1 and HSV. Methanol extract had the highest antiviral activity and the most polar fraction of this extract (fraction D) inhibited HSV with TI and SI values of 57.1 and 133; however, it showed mild activity against HIV with SI value of 6.25 (fraction 3). The anti-HSV activity of active fraction was confirmed using FLASH-PCR. Phytochemical investigation revealed that fraction D encompasses flavonoids compounds. The time-of-addition study demonstrated that fraction D disturbs viral replication after penetrating to the cell. A. marina was endowed with fragments by which found to be able to inhibit replication of HSV after entry but did not show significant potency against HIV-1. This promotes further investigation in anti-HSV drug discovery.

  4. Microplastics are taken up by mussels (Mytilus edulis) and lugworms (Arenicola marina) living in natural habitats.

    PubMed

    Van Cauwenberghe, Lisbeth; Claessens, Michiel; Vandegehuchte, Michiel B; Janssen, Colin R

    2015-04-01

    We studied the uptake of microplastics under field conditions. At six locations along the French-Belgian-Dutch coastline we collected two species of marine invertebrates representing different feeding strategies: the blue mussel Mytilus edulis (filter feeder) and the lugworm Arenicola marina (deposit feeder). Additional laboratory experiments were performed to assess possible (adverse) effects of ingestion and translocation of microplastics on the energy metabolism (cellular energy allocation) of these species. Microplastics were present in all organisms collected in the field: on average 0.2 ± 0.3 microplastics g(-1) (M. edulis) and 1.2 ± 2.8 particles g(-1) (A. marina). In a proof of principle laboratory experiment, mussels and lugworms exposed to high concentrations of polystyrene microspheres (110 particles mL(-1) seawater and 110 particles g(-1) sediment, respectively) showed no significant adverse effect on the organisms' overall energy budget. The results are discussed in the context of possible risks as a result of the possible transfer of adsorbed contaminants.

  5. Improved leaf area index based biomass estimations for Zostera marina L.

    PubMed

    Solana-Arellano, Elena; Echavarria-Heras, Hector; Gallegos Martinez, Margarita

    2003-12-01

    The application of special scanning technologies in plant population studies makes it now possible to offer reliable indirect estimations of Leaf Area Index (LAI). This has stimulated the adaptation of related biomass assessment methods and has provided a way to simplify tedious laboratory procedures whilst avoiding destructive sampling. Particularly, above-ground biomass for Zostera marina L. has been expressed depending linearly on Leaf Area Index. Nevertheless, we demonstrate that this approach produces biased estimations. It is also shown that expressing leaf dry weight by means of an allometric function of length and width can eliminate bias. Furthermore, the dominant term of the associated power series expansion becomes the aforementioned linear representation in terms of Leaf Area Index. The consistency of the estimation methods derived from the allometric model was tested using data from a Z. marina meadow. Consequently, the improved method is expected to become a valuable tool for the reduction of the uncertainty associated with the estimation of above-ground biomass through the use of Leaf Area Index.

  6. Transcriptomic resilience to global warming in the seagrass Zostera marina, a marine foundation species.

    PubMed

    Franssen, Susanne U; Gu, Jenny; Bergmann, Nina; Winters, Gidon; Klostermeier, Ulrich C; Rosenstiel, Philip; Bornberg-Bauer, Erich; Reusch, Thorsten B H

    2011-11-29

    Large-scale transcription profiling via direct cDNA sequencing provides important insights as to how foundation species cope with increasing climatic extremes predicted under global warming. Species distributed along a thermal cline, such as the ecologically important seagrass Zostera marina, provide an opportunity to assess temperature effects on gene expression as a function of their long-term adaptation to heat stress. We exposed a southern and northern European population of Zostera marina from contrasting thermal environments to a realistic heat wave in a common-stress garden. In a fully crossed experiment, eight cDNA libraries, each comprising ~125 000 reads, were obtained during and after a simulated heat wave, along with nonstressed control treatments. Although gene-expression patterns during stress were similar in both populations and were dominated by classical heat-shock proteins, transcription profiles diverged after the heat wave. Gene-expression patterns in southern genotypes returned to control values immediately, but genotypes from the northern site failed to recover and revealed the induction of genes involved in protein degradation, indicating failed metabolic compensation to high sea-surface temperature. We conclude that the return of gene-expression patterns during recovery provides critical information on thermal adaptation in aquatic habitats under climatic stress. As a unifying concept for ecological genomics, we propose transcriptomic resilience, analogous to ecological resilience, as an important measure to predict the tolerance of individuals and hence the fate of local populations in the face of global warming. PMID:22084086

  7. Effects of barium and cadmium on the population development of the marine nematode Rhabditis (Pellioditis) marina.

    PubMed

    Lira, V F; Santos, G A P; Derycke, S; Larrazabal, M E L; Fonsêca-Genevois, V G; Moens, T

    2011-10-01

    Offshore oil and gas drilling often involves the use of fluids containing barium and traces of other heavy metals. These may affect the environment, but information on their toxicity to benthic biota remains scant. Here, we present results of a 10-day bioassay with the marine nematode Rhabditis (Pellioditis) marina at different loads of barium (0-10 ,000 ppm nominal concentrations) and cadmium (0-12 ppm) in the range of concentrations reported from drilling-impacted sediments. Barium did not affect the fitness and population development of R. (P.) marina at concentrations up to 300 ppm, but did cause a decrease in population abundance and an increase in development time from concentrations of 400-2000 ppm onwards. Increased mortality occurred at 4800 ppm Ba. For cadmium, LOEC and EC₅₀ values for total population abundance were 2.95 and 8.82 ppm, respectively. Cd concentrations as low as 2.40 to 2.68 caused a decrease in the abundance of adult nematodes, indicating that assays covering more generations would likely demonstrate yet more pronounced population-level effects. Our results indicate that oil and gas drilling activities may potentially have important implications for the meiobenthos through the toxicity of barium and associated metals like cadmium. PMID:21855994

  8. The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea.

    PubMed

    Olsen, Jeanine L; Rouzé, Pierre; Verhelst, Bram; Lin, Yao-Cheng; Bayer, Till; Collen, Jonas; Dattolo, Emanuela; De Paoli, Emanuele; Dittami, Simon; Maumus, Florian; Michel, Gurvan; Kersting, Anna; Lauritano, Chiara; Lohaus, Rolf; Töpel, Mats; Tonon, Thierry; Vanneste, Kevin; Amirebrahimi, Mojgan; Brakel, Janina; Boström, Christoffer; Chovatia, Mansi; Grimwood, Jane; Jenkins, Jerry W; Jueterbock, Alexander; Mraz, Amy; Stam, Wytze T; Tice, Hope; Bornberg-Bauer, Erich; Green, Pamela J; Pearson, Gareth A; Procaccini, Gabriele; Duarte, Carlos M; Schmutz, Jeremy; Reusch, Thorsten B H; Van de Peer, Yves

    2016-02-18

    Seagrasses colonized the sea on at least three independent occasions to form the basis of one of the most productive and widespread coastal ecosystems on the planet. Here we report the genome of Zostera marina (L.), the first, to our knowledge, marine angiosperm to be fully sequenced. This reveals unique insights into the genomic losses and gains involved in achieving the structural and physiological adaptations required for its marine lifestyle, arguably the most severe habitat shift ever accomplished by flowering plants. Key angiosperm innovations that were lost include the entire repertoire of stomatal genes, genes involved in the synthesis of terpenoids and ethylene signalling, and genes for ultraviolet protection and phytochromes for far-red sensing. Seagrasses have also regained functions enabling them to adjust to full salinity. Their cell walls contain all of the polysaccharides typical of land plants, but also contain polyanionic, low-methylated pectins and sulfated galactans, a feature shared with the cell walls of all macroalgae and that is important for ion homoeostasis, nutrient uptake and O2/CO2 exchange through leaf epidermal cells. The Z. marina genome resource will markedly advance a wide range of functional ecological studies from adaptation of marine ecosystems under climate warming, to unravelling the mechanisms of osmoregulation under high salinities that may further inform our understanding of the evolution of salt tolerance in crop plants. PMID:26814964

  9. Transcriptomic resilience to global warming in the seagrass Zostera marina, a marine foundation species.

    PubMed

    Franssen, Susanne U; Gu, Jenny; Bergmann, Nina; Winters, Gidon; Klostermeier, Ulrich C; Rosenstiel, Philip; Bornberg-Bauer, Erich; Reusch, Thorsten B H

    2011-11-29

    Large-scale transcription profiling via direct cDNA sequencing provides important insights as to how foundation species cope with increasing climatic extremes predicted under global warming. Species distributed along a thermal cline, such as the ecologically important seagrass Zostera marina, provide an opportunity to assess temperature effects on gene expression as a function of their long-term adaptation to heat stress. We exposed a southern and northern European population of Zostera marina from contrasting thermal environments to a realistic heat wave in a common-stress garden. In a fully crossed experiment, eight cDNA libraries, each comprising ~125 000 reads, were obtained during and after a simulated heat wave, along with nonstressed control treatments. Although gene-expression patterns during stress were similar in both populations and were dominated by classical heat-shock proteins, transcription profiles diverged after the heat wave. Gene-expression patterns in southern genotypes returned to control values immediately, but genotypes from the northern site failed to recover and revealed the induction of genes involved in protein degradation, indicating failed metabolic compensation to high sea-surface temperature. We conclude that the return of gene-expression patterns during recovery provides critical information on thermal adaptation in aquatic habitats under climatic stress. As a unifying concept for ecological genomics, we propose transcriptomic resilience, analogous to ecological resilience, as an important measure to predict the tolerance of individuals and hence the fate of local populations in the face of global warming.

  10. Biosynthesis of silver nanoparticles from mangrove plant (Avicennia marina) extract and their potential mosquito larvicidal property.

    PubMed

    Balakrishnan, Srinivasan; Srinivasan, Muthukumarasamy; Mohanraj, Jeyaraj

    2016-09-01

    To identify the larvicidal activities of silver nanoparticles synthesised with Avicennia marina leaf extract against the larvae of Aedes aegypti and Anopheleus stephensi, in vitro larvicidal activities such as LC50 and LC90 were assessed. Further, characterisation such as UV and FTIR analysis were carried out for the synthesised silver nanoparticles. The LC50 value of the synthesised silver nanoparticles was identified as 4.374 and 7.406 mg/L for An. stephensi and Ae. aegypti larvae respectively. Further, the LC90 values are also identified as 4.928 and 9.865 mg/L for An. stephensi and Ae. aegypti species respectively. The synthesised silver nanoparticles have maximum absorption at 420 nm with the average size of 60-95 nm. The FTIR data showed prominent peaks in (3940.57, 3929.00, 3803.63, 3712.97, 2918.30, 2231.64, 1610.50, 1377.17, 1257.59, 1041.59, 1041.56, 775.38, 667.37 and 503.21) different ranges. The biosynthesis of silver nanoparticles with leaf aqueous extract of A. marina provides potential source for the larvicidal activity against mosquito borne diseases. The present study proved the mosquitocidal properties of silver nanoparticles synthesised from mangroves of Vellar estuary. This is an ideal eco-friendly approach for the vector control programs. PMID:27605825

  11. A tale of two seagrasses: Comparing the science and management of Zostera marina and Zostera japonica in the Pacific Northwest

    EPA Science Inventory

    On the Pacific coast of North America, at least two congeners of Zostera occur: native Zostera marina, and introduced, Z. japonica. Z. japonica is considered “invasive” and therefore, ecologically and economically harmful by some, while others consider it benign or perhaps benef...

  12. APPARENT LACK OF VESICULAR-ARBUSCULAR MYCORRHIZA (VAM) IN SEAGRASSES ZOSTERA MARINA L. AND THALASSIA TESTUDIUM BANKS EX KONIG

    EPA Science Inventory

    We examined two populations of Zostera marina L. and one of Thalassia testudinum Banks ex Konig for presence of vesicular-arbuscular mycorrhiza (VAM). None of these plants showed any VAM colonization. In addition, we were unable to find any literature references on the presence o...

  13. Zostera marina (eelgrass) growth and survival along a gradient ofnutrients and turbidity in the lower Chesapeake Bay

    USGS Publications Warehouse

    Moore, K.A.; Neckles, H.A.; Orth, R.J.

    1996-01-01

    Survival of transplanted Zostera marina L. (eelgrass), Z. marina growth,and environmental conditions were studied concurrently at a number of sitesin a southwestern tributary of the Chesapeake Bay to elucidate the factorslimiting macrophyte distribution in this region. Consistent differences insurvival of the transplants were observed, with no long-term survival at anyof the sites that were formerly vegetated with this species but thatcurrently remain unvegetated. Therefore, the current distribution of Z.marina likely represents the extent of suitable environmental conditions inthe region, and the lack of recovery into historically vegetated sites is notsolely due to lack of propagules. Poor long-term survival was related toseasonally high levels of water column light attenuation. Fall transplantsdied by the end of summer following exposure to levels of high springturbidity (K(d) > 3.0). Accumulation of an epiphyte matrix during the latespring (0.36 to 1.14 g g-1 dry wt) may also have contributed to thisstress. Differences in water column nutrient levels among sites during thefall and winter (10 to 15 ??M dissolved inorganic nitrogen and 1 ??Mdissolved inorganic phosphates) had no observable effect on epiphyteaccumulation or macrophyte growth. Salinity effects were minor and there wereno symptoms of disease. Although summertime conditions resulted indepressions in growth, they did not alone limit long-term survival. It issuggested that water quality conditions enhancing adequate seagrass growthduring the spring may be key to long-term Z. marina survival and successfulrecolonization in this region.

  14. WATER QUALITY AT FIVE MARINAS IN LAKE TEXOMA AS RELATED TO METHYL TERT-BUTYL ETHER (MTBE)

    EPA Science Inventory

    Occurrence of methyl tert-butyl ether (MTBE) in five marinas was monitored between June 1999 and November 2000 in Lake Texoma located on the border of Oklahoma and Texas. MTBE is a commonly used gasoline additive and a suspected carcinogen. Lake water was collected at locations i...

  15. EFFECTS OF RECREATIONAL CLAM HARVESTING ON EELGRASS (ZOSTERA MARINA) AND ASSOCIATED INFAUNAL INVERTEBRATES: IN SITU MANIPULATIVE EXPERIMENTS

    EPA Science Inventory

    The effect of recreational clam harvesting on eelgrass (Zostera marina) was experimentally tested by raking or digging for clams in experimental 1-m2 plots located in a Yaquina Bay (Newport, OR) eelgrass meadow. After three monthly treatments, eelgrass measures of biomass, prima...

  16. Fine-scale spatial distribution of the common lugworm Arenicola marina, and effects of intertidal clam fishing

    NASA Astrophysics Data System (ADS)

    Boldina, Inna; Beninger, Peter G.

    2014-04-01

    Despite its ubiquity and its role as an ecosystem engineer on temperate intertidal mudflats, little is known of the spatial ecology of the lugworm Arenicola marina. We estimated lugworm densities and analyzed the spatial distribution of A. marina on a French Atlantic mudflat subjected to long-term clam digging activities, and compared these to a nearby pristine reference mudflat, using a combination of geostatistical techniques: point-pattern analysis, autocorrelation, and wavelet analysis. Lugworm densities were an order of magnitude greater at the reference site. Although A. marina showed an aggregative spatial distribution at both sites, the characteristics and intensity of aggregation differed markedly between sites. The reference site showed an inhibition process (regular distribution) at distances <7.5 cm, whereas the impacted site showed a random distribution at this scale. At distances from 15 cm to several tens of meters, the spatial distribution of A. marina was clearly aggregated at both sites; however, the autocorrelation strength was much weaker at the impacted site. In addition, the non-impacted site presented multi-scale spatial distribution, which was not evident at the impacted site. The differences observed between the spatial distributions of the fishing-impacted vs. the non-impacted site reflect similar findings for other components of these two mudflat ecosystems, suggesting common community-level responses to prolonged mechanical perturbation: a decrease in naturally-occurring aggregation. This change may have consequences for basic biological characteristics such as reproduction, recruitment, growth, and feeding.

  17. An effective seed protection method for planting Zostera marina (eelgrass) seeds: Implications for their large-scale restoration.

    PubMed

    Zhang, Pei-Dong; Fang, Chao; Liu, Jie; Xu, Qiang; Li, Wen-Tao; Liu, Yan-Shan

    2015-06-15

    We describe an innovative method of planting Zostera marina (eelgrass) seeds in which hessian bags filled with high-silted sediments are used as a seed protecting device. Here, we evaluated the effectiveness of the method through a field seed-sowing experiment over a three year period. The suitable seed planting density required by the seeds of Z. marina in this method was also investigated. In the spring following seed distribution, seedling establishment rate of Z. marina subjected to different seed densities of 200-500seedsbag(-1) ranged from 16% to 26%. New eelgrass patches from seed were fully developed and well maintained after 2-3years following distribution. The seed planting density of 400seedsbag(-1) may be the most suitable for the establishment of new eelgrass patches. Our results demonstrate that seed-based restoration can be an effective restoration tool and the technique presented should be considered for future large-scale Z. marina restoration projects. PMID:25912265

  18. Feeding by the heterotrophic dinoflagellate Oxyrrhis marina on the red-tide raphidophyte Heterosigma akashiwo: a potential biological method to control red tides using mass-cultured grazers.

    PubMed

    Jeong, Hae Jin; Kim, Jae Seong; Yoo, Yeong Du; Kim, Seong Taek; Kim, Tae Hoon; Park, Myung Gil; Lee, Chang Hoon; Seong, Kyeong Ah; Kang, Nam Seon; Shim, Jae Hyung

    2003-01-01

    As part of the development of a method to control the outbreak and persistence of red tides using mass-cultured heterotrophic protist grazers, we measured the growth and ingestion rates of cultured Oxyrrhis marina (a heterotrophic dinoflagellate) on cultured Heterosigma akashiwo (a raphidophyte) in bottles in the laboratory and in mesocosms (ca. 60 liter) in nature, and those of the cultured grazer on natural populations of the red-tide organism in mesocosms set up in nature. In the bottle incubation, specific growth rates of O. marina increased rapidly with increasing concentration of cultured prey up to ca. 950 ng C ml(-1) (equivalent to 9,500 cells ml(-1)), but were saturated at higher concentrations. Maximum specific growth rate (mumax), KGR (prey concentration sustaining 0.5 mumax) and threshold prey concentration of O. marina on H. akashiwo were 1.43 d(-1), 104 ng C ml(-1), and 8.0 ng C ml(-1), respectively. Maximum ingestion and clearance rates of O. marina were 1.27 ng C grazer(-1) d(-1) and 0.3 microl grazer(-1) h(-1), respectively. Cultured O. marina grew well effectively reducing cultured and natural populations of H. akashiwo down to a very low concentration within 3 d in the mesocosms. The growth and ingestion rates of cultured O. marina on natural populations of H. akashiwo in the mesocosms were 39% and 40%, respectively, of those calculated based on the results from the bottle incubation in the laboratory, while growth and ingestion rates of cultured O. marina on cultured H. akashiwo in the mesocosms were 55% and 36%, respectively. Calculated grazing impact by O. marina on natural populations of H. akashiwo suggests that O. marina cultured on a large scale could be used for controlling red tides by H. akashiwo near aquaculture farms that are located in small ponds, lagoons, semi-enclosed bays, and large land-aqua tanks to which fresh seawater should be frequently supplied. PMID:15132171

  19. Genome-wide transcriptomic responses of the seagrasses Zostera marina and Nanozostera noltii under a simulated heatwave confirm functional types.

    PubMed

    Franssen, Susanne U; Gu, Jenny; Winters, Gidon; Huylmans, Ann-Kathrin; Wienpahl, Isabell; Sparwel, Maximiliane; Coyer, James A; Olsen, Jeanine L; Reusch, Thorsten B H; Bornberg-Bauer, Erich

    2014-06-01

    Genome-wide transcription analysis between related species occurring in overlapping ranges can provide insights into the molecular basis underlying different ecological niches. The co-occurring seagrass species, Zostera marina and Nanozostera noltii, are found in marine coastal environments throughout the northern hemisphere. Z. marina is often dominant in subtidal environments and subjected to fewer temperature extremes compared to the predominately intertidal and more stress-tolerant N. noltii. We exposed plants of both species to a realistic heat wave scenario in a common-stress-garden experiment. Using RNA-seq (~7million reads/library), four Z. marina and four N. noltii libraries were compared representing northern (Denmark) and southern (Italy) locations within the co-occurring range of the species' European distribution. A total of 8977 expressed genes were identified, of which 78 were directly related to heat stress. As predicted, both species were negatively affected by the heat wave, but showed markedly different molecular responses. In Z. marina the heat response was similar across locations in response to the heatwave at 26°C, with a complex response in functions related to protein folding, synthesis of ribosomal chloroplast proteins, proteins involved in cell wall modification and heat shock proteins (HSPs). In N. noltii the heat response markedly differed between locations, while HSP genes were not induced in either population. Our results suggest that as coastal seawater temperatures increase, Z. marina will disappear along its southern most ranges, whereas N. noltii will continue to move north. As a consequence, sub- and intertidal habitat partitioning may weaken in more northern regions because the higher thermal tolerance of N. noltii provides a competitive advantage in both habitats. Although previous studies have focused on HSPs, the present study clearly demonstrates that a broader examination of stress related genes is necessary.

  20. Mangrove distribution and mosquito control: transport of Avicennia marina propagules by mosquito-control runnels in southeast Queensland saltmarshes

    NASA Astrophysics Data System (ADS)

    Breitfuss, M. J.; Connolly, R. M.; Dale, P. E. R.

    2003-03-01

    The saltmarsh-mangrove interface generally constitutes the landward boundary for the grey mangrove Avicennia marina var. australasica, the most widespread species on southeast Queensland shores. A. marina produces buoyant propagules, which are dispersed by tidal waters, only infrequently transported to saltmarsh by the highest spring tides. We predicted that runnelling, a form of habitat modification for mosquito control, transports and deposits mangrove propagules to saltmarsh because the runnels carry low-amplitude tides that would not normally inundate higher regions of the marsh. To test this, groups of marked A. marina propagules were released at three runnelled saltmarshes in southeast Queensland during high-amplitude, flooding and low-amplitude, non-flooding tidal events. The distance propagules were transported from their original starting positions on the saltmarsh-mangrove interface was measured and analysed to detect differences among groups at different distances from runnels. Groups of propagules released within 10 m of a runnel were always transported significantly further from the starting position and further up the saltmarsh shore after both flooding and non-flooding tides than any other groups. In addition, the pattern of stranding on saltmarsh for significantly different groups was closely associated with the path of runnel construction so that propagules were located either in the runnel or in depressions linked to the runnel that had been isolated mosquito-breeding pools prior to runnelling. Observations of A. marina plants at other runnelled sites suggest that propagules transported by runnels can establish and develop to maturity, at least in depressions and runnels, in saltmarsh. The fact that runnels transport propagules to regions of the saltmarsh beyond their normal limits of dispersion suggests a possible advantage for landward extension of the intertidal distribution of A. marina at runnelled sites and should be considered in saltmarsh

  1. Comparing the performance of species distribution models of Zostera marina: Implications for conservation

    NASA Astrophysics Data System (ADS)

    Valle, Mireia; van Katwijk, Marieke M.; de Jong, Dick J.; Bouma, Tjeerd J.; Schipper, Aafke M.; Chust, Guillem; Benito, Blas M.; Garmendia, Joxe M.; Borja, Ángel

    2013-10-01

    Intertidal seagrasses show high variability in their extent and location, with local extinctions and (re-)colonizations being inherent in their population dynamics. Suitable habitats are identified usually using Species Distribution Models (SDM), based upon the overall distribution of the species; thus, accounting solely for spatial variability. To include temporal effects caused by large interannual variability, we constructed SDMs for different combinations and fusions of yearly distribution data. The main objectives were to: (i) assess the spatio-temporal dynamics of an intertidal seagrass bed of Zostera marina; (ii) select the most accurate SDM techniques to model different temporal distribution data subsets of the species; (iii) assess the relative importance of the environmental variables for each data subset; and (iv) evaluate the accuracy of the models to predict species conservation areas, addressing implications for management. To address these objectives, a time series of 14-year distribution data of Zostera marina in the Ems estuary (The Netherlands) was used to build different data subsets: (1) total presence area; (2) a conservative estimate of the total presence area, defined as the area which had been occupied during at least 4 years; (3) core area, defined as the area which had been occupied during at least 2/3 of the total period; and (4-6) three random selections of monitoring years. On average, colonized and disappeared areas of the species in the Ems estuary showed remarkably similar transition probabilities of 12.7% and 12.9%, respectively. SDMs based upon machine-learning methods (Boosted Regression Trees and Random Forest) outperformed regression-based methods. Current velocity and wave exposure were the most important variables predicting the species presence for widely distributed data. Depth and sea floor slope were relevant to predict conservative presence area and core area. It is concluded that, the fusion of the spatial distribution

  2. Marina's Poem.

    ERIC Educational Resources Information Center

    Glenn, Mel

    2002-01-01

    Suggests that educators can provide the nurturing and encouraging atmosphere, the sense to say what works and what does not, and the freedom to let the students express whatever their synaptic processes produce without the fear that their lives and grades depend on it. Presents a "Top Ten List" of the best "rules" in teaching poetry writing. (SG)

  3. Photovoltaic DER System Could Save USPS $25,000 per Year in Marina del Rey, California

    SciTech Connect

    Not Available

    2002-11-01

    In numerous projects, government agencies are demonstrating the economic and environmental value of using distributed energy resources (DER) to provide reliable electricity for Federal facilities. These projects also show how renewable DER systems such as photovoltaics (PV) can be effectively integrated into utility power grids to provide added power during peak demand periods in populous regions and states. This four-page case study describes a recent project in which the United States Postal Service (USPS) worked with the U.S. Department of Energy (DOE) Federal Energy Management Program (FEMP), a national laboratory, the local utility, and a private company to install a PV DER system at the USPS Marina Processing and Distribution Center in Inglewood, California. This system is expected to shave 10% off the facility's 1.2-megawatt peak power demand and save more $25,000 per year in utility costs.

  4. Benthic assemblages, biodiversity and invasiveness in marinas and commercial harbours: an investigation using a bioindicator group.

    PubMed

    Megina, Cesar; González-Duarte, Manuel M; López-González, Pablo J

    2016-01-01

    Fouling communities on artificial marine structures are generally different from benthic communities in natural rocky habitats. However, they may also differ among different types of artificial structures. Two artificial structures in direct contact with arriving vessels were compared: floating pontoons within recreational marinas, and sea-walls within commercial harbours. Natural rocky habitats were used as a reference, and the genus Eudendrium (Cnidaria, Hydrozoa) was chosen as a bioindicator. The assemblages were different among the three types of habitat studied, with different species characterising each habitat. The probability of finding an invasive Eudendrium species was significantly higher on pontoons. Diversity was the lowest on pontoons, but it was not significantly different between sea-walls and natural rocks. In general, a barrier to the spread of exotic species exists between harbours and natural rocky habitats. Floating pontoons seem to be a less suitable habitat for native fauna and a key element in marine biological invasions. PMID:26960078

  5. Cerium Binding Activity of Pectins Isolated from the Seagrasses Zostera marina and Phyllospadix iwatensis

    PubMed Central

    Khotimchenko, Yuri; Khozhaenko, Elena; Kovalev, Valeri; Khotimchenko, Maxim

    2012-01-01

    Cerium binding activity of three different water soluble pectin compounds of different origin was studied in a batch sorption system. The Langmuir, Freundlich and BET sorption models were adopted to describe the binding reactions between metal ions and pectin molecules. The Langmuir model provided the best fit. Within the pH range from 4.0 to 6.0, the largest amount of the cerium ions was bound by pectin isolated from the seagrass Phylospadix iwatensis in comparison to pectin extracted from the seagrass Zostera marina and pectin obtained from citrus peel (commercial grade). The Langmuir constants were also highest for the pectin samples isolated from the seagrass P. iwatensis. The results obtained from this study suggest that pectin is a prospective source for the development of radioisotope-removing pharmaceuticals. PMID:22690146

  6. 33 CFR 162.200 - Marina del Rey, Calif.; restricted area.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... 33 Navigation and Navigable Waters 2 2012-07-01 2012-07-01 false Marina del Rey, Calif...″ 118°27′39.5″ B 33°57′52.3″ 118°27′43.6″ C 33°57′48.6″ 118°27′48.8″ D 33°57′29.8″ 118°27′34.7″ E 33°57′30.9″ 118°27′29.1″ F 33°57′37.4″ 118°27′33.8″ G 33°57′42.4″ 118°27′23.0″ H......

  7. 33 CFR 162.200 - Marina del Rey, Calif.; restricted area.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... 33 Navigation and Navigable Waters 2 2013-07-01 2013-07-01 false Marina del Rey, Calif...″ 118°27′39.5″ B 33°57′52.3″ 118°27′43.6″ C 33°57′48.6″ 118°27′48.8″ D 33°57′29.8″ 118°27′34.7″ E 33°57′30.9″ 118°27′29.1″ F 33°57′37.4″ 118°27′33.8″ G 33°57′42.4″ 118°27′23.0″ H......

  8. 33 CFR 162.200 - Marina del Rey, Calif.; restricted area.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... 33 Navigation and Navigable Waters 2 2014-07-01 2014-07-01 false Marina del Rey, Calif...″ 118°27′39.5″ B 33°57′52.3″ 118°27′43.6″ C 33°57′48.6″ 118°27′48.8″ D 33°57′29.8″ 118°27′34.7″ E 33°57′30.9″ 118°27′29.1″ F 33°57′37.4″ 118°27′33.8″ G 33°57′42.4″ 118°27′23.0″ H......

  9. Genome sequence of the ocean sediment bacterium Saccharomonospora marina type strain (XMU15(T)).

    PubMed

    Klenk, Hans-Peter; Lu, Megan; Lucas, Susan; Lapidus, Alla; Copeland, Alex; Pitluck, Sam; Goodwin, Lynne A; Han, Cliff; Tapia, Roxanne; Brambilla, Evelyne-Marie; Pötter, Gabriele; Land, Miriam; Ivanova, Natalia; Rohde, Manfred; Göker, Markus; Detter, John C; Li, Wen-Jun; Kyrpides, Nikos C; Woyke, Tanja

    2012-05-25

    Saccharomonospora marina Liu et al. 2010 is a member of the genus Saccharomonospora, in the family Pseudonocardiaceae that is poorly characterized at the genome level thus far. Members of the genus Saccharomonospora are of interest because they originate from diverse habitats, such as leaf litter, manure, compost, surface of peat, moist, over-heated grain, and ocean sediment, where they might play a role in the primary degradation of plant material by attacking hemicellulose. Organisms belonging to the genus are usually Gram-positive staining, non-acid fast, and classify among the actinomycetes. Here we describe the features of this organism, together with the complete genome sequence (permanent draft status), and annotation. The 5,965,593 bp long chromosome with its 5,727 protein-coding and 57 RNA genes was sequenced as part of the DOE funded Community Sequencing Program (CSP) 2010 at the Joint Genome Institute (JGI).

  10. Digestive proteases of the lugworm (Arenicola marina) inhibited by Cu from contaminated sediments

    SciTech Connect

    Chen, Z.; Mayer, L.M.

    1998-03-01

    The authors examined potential toxic effects of copper released from contaminated sediments during deposit feeding of the lugworm, Arenicola marina. Titration of Cu solution into gut fluids can result in decreases in protease activity if sufficient Cu is added. The effects of Cu on gut proteases were confirmed by incubation of gut fluids with Cu-contaminated harbor sediments. Monitoring of Cu titration into gut fluids shows that enzyme inhibition and quenching of gut protein fluorescence occur only when sufficient Cu has been added to allow inorganic Cu species to become abundant. This threshold level probably represents the exhaustion of strong binding sites that act as protection against enzyme inhibition. Thus, sediments contaminated with Cu may have inhibitory effects on digestive processes in lugworms.

  11. Distribution and characteristics of marine litter on the Marina beach, Chennai, India

    NASA Astrophysics Data System (ADS)

    Dhanapal, R.

    2013-05-01

    The types, quantities, and distribution of marine litter found on the beach of the Marina, Chennai, India were surveyed during 2010-2011 season wise. Litter items were sorted into material and usage categories. The counts and weights of the litter were counted and measured. The plastic-type litter (63.4 kg) is the most dominant material category followed by polythene (10.6 kg), metal (5.3 kg) and glass (15.2 kg). Cloth (66.0 kg) is the dominant usage category followed by rubber (45.7 kg) and wood (70.0 kg). Based on the typological results three dominant litter sources were identified viz., land-based, vessel-based and fishery-based sources. t test help recognize dominant litter sources.t; t;

  12. Proteomic profile of Ortleppascaris sp.: A helminth parasite of Rhinella marina in the Amazonian region

    PubMed Central

    e Silva, Jefferson Pereira; Furtado, Adriano Penha; dos Santos, Jeannie Nascimento

    2014-01-01

    Ortleppascaris sp. is a helminth that, in its larval stage, infects the liver parenchyma of the amphibian Rhinella marina, resulting in severe physiological and pathological changes. This study used a proteomic approach to determine the overall profile of proteins expressed in a somatic extract from the nematodes to investigate the relationship between the parasite and its host. A total of 60 abundant proteins were selected from the two-dimensional electrophoresis, identified by peptide mass fingerprinting, and grouped based on their Gene Ontology by the biological processes in which they are potentially involved. Important helminthic derivatives, such as the immunoreactive As37 antigen, guanylyl cyclases, proteolytic enzymes, and other proteins conserved among different parasites, were identified through homology. This study represents a new approach to helminth-related proteomic studies using an amphibian animal model. Furthermore, this study identified protein markers that are important to the host–parasite relationship and the viability, development, infectivity, and virulence of helminths. PMID:25161903

  13. Sediment accumulation and mercury (Hg) flux in Avicennia marina forest of Deep Bay, China

    NASA Astrophysics Data System (ADS)

    Li, Ruili; Chai, Minwei; Guo, Meixian; Qiu, Guo Yu

    2016-08-01

    To investigate the rate of sediment accumulation and mercury (Hg) flux in Avicennia marina forest of Deep Bay, China, sediment cores were analyzed. The results showed that Hg concentrations were much higher at all depths compared to the background level. A high correlation between Hg and total organic carbon (TOC) indicated their similar anthropogenic origin. Sedimentation rate was estimated to be 1.38 cm a-1 by 210Pb geochronology. The increase in the mass sediment accumulation rates was rapid (range: 0.5-0.94 g cm-2 a-1), and the Hg fluxes ranged between 76 and 116 ng cm-2 a-1 during the last three decades. The reduction in both Hg concentrations and flux during the last decade may be due to the adoption of contamination control policies. Our results support the notion that the Hg fluxes determined from the sediment cores reveal the effects of anthropogenic influences from the areas around Deep Bay.

  14. An introduced pentastomid parasite (Raillietiella frenata) infects native cane toads (Rhinella marina) in Panama.

    PubMed

    Kelehear, Crystal; Saltonstall, Kristin; Torchin, Mark E

    2015-04-01

    The pentastomid parasite, Raillietiella frenata, is native to Asia where it infects the Asian House gecko, Hemidactylus frenatus. This gecko has been widely introduced and recently R. frenata was found in introduced populations of cane toads (Rhinella marina) in Australia, indicating a host-switch from introduced geckos to toads. Here we report non-native adult R. frenata infecting the lungs of native cane toads in Panama. Eight of 64 toads were infected (median = 2.5, range = 1-80 pentastomids/toad) and pentastomid prevalence was positively associated with the number of buildings at a site, though further sampling is needed to confirm this pattern. We postulate that this pattern is likely due to a host shift of this parasite from an urban-associated introduced gecko. This is the first record of this parasite infecting cane toads in their native range, and the first instance of this parasite occurring in Central America. PMID:25394910

  15. Characterisation of Major Histocompatibility Complex Class I in the Australian Cane Toad, Rhinella marina

    PubMed Central

    Lillie, Mette; Shine, Richard; Belov, Katherine

    2014-01-01

    The Major Histocompatibility Complex (MHC) class I is a highly variable gene family that encodes cell-surface receptors vital for recognition of intracellular pathogens and initiation of immune responses. The MHC class I has yet to be characterised in bufonid toads (Order: Anura; Suborder: Neobatrachia; Family: Bufonidae), a large and diverse family of anurans. Here we describe the characterisation of a classical MHC class I gene in the Australian cane toad, Rhinella marina. From 25 individuals sampled from the Australian population, we found only 3 alleles at this classical class I locus. We also found large number of class I alpha 1 alleles, implying an expansion of class I loci in this species. The low classical class I genetic diversity is likely the result of repeated bottleneck events, which arose as a result of the cane toad's complex history of introductions as a biocontrol agent and its subsequent invasion across Australia. PMID:25093458

  16. Supramolecular organization of phycobiliproteins in the chlorophyll d-containing cyanobacterium Acaryochloris marina.

    PubMed

    Chen, Min; Floetenmeyer, Matthias; Bibby, Thomas S

    2009-08-01

    Here we report the high-resolution detail of the organization of phycobiliprotein structures associated with photosynthetic membranes of the chlorophyll d-containing cyanobacterium Acaryochloris marina. Cryo-electron transmission-microscopy on native cell sections show extensive patches of near-crystalline phycobiliprotein rods that are associated with the stromal side of photosynthetic membranes. This supramolecular photosynthetic structure represents a novel mechanism of organizing the photosynthetic light-harvesting machinery. In addition, the specific location of phycobiliprotein patches suggests a physical separation of photosystem I and photosystem II reaction centres. Based on this finding and the known photosystem's structure in Acaryochloris, we discuss possible membrane arrangements of photosynthetic membrane complexes in this species.

  17. Pigment composition and adaptation in free-living and symbiotic strains of Acaryochloris marina.

    PubMed

    Chan, Yi-Wah; Nenninger, Anja; Clokie, Samuel J H; Mann, Nicholas H; Scanlan, David J; Whitworth, Anna L; Clokie, Martha R J

    2007-07-01

    Acaryochloris marina strains have been isolated from several varied locations and habitats worldwide demonstrating a diverse and dynamic ecology. In this study, the whole cell photophysiologies of strain MBIC11017, originally isolated from a colonial ascidian, and the free-living epilithic strain CCMEE5410 are analyzed by absorbance and fluorescence spectroscopy, laser scanning confocal microscopy, sodium dodecyl sulfate polyacrylamide gel electrophoresis and subsequent protein analysis. We demonstrate pigment adaptation in MBIC11017 and CCMEE5410 under different light regimes. We show that the higher the incident growth light intensity for both strains, the greater the decrease in their chlorophyll d content. However, the strain MBIC11017 loses its phycobiliproteins relative to its chlorophyll d content when grown at light intensities of 40 microE m(-2) s(-1) without shaking and 100 microE m(-2) s(-1) with shaking. We also conclude that phycobiliproteins are absent in the free-living strain CCMEE5410.

  18. Experimental assessment of critical anthropogenic sediment burial in eelgrass Zostera marina.

    PubMed

    Munkes, Britta; Schubert, Philipp R; Karez, Rolf; Reusch, Thorsten B H

    2015-11-15

    Seagrass meadows, one of the world's most important and productive coastal habitats, are threatened by a range of anthropogenic actions. Burial of seagrass plants due to coastal activities is one important anthropogenic pressure leading to the decline of local populations. In our study, we assessed the response of eelgrass Zostera marina to sediment burial from physiological, morphological, and population parameters. In a full factorial field experiment, burial level (5-20cm) and burial duration (4-16weeks) were manipulated. Negative effects were visible even at the lowest burial level (5cm) and shortest duration (4weeks), with increasing effects over time and burial level. Buried seagrasses showed higher shoot mortality, delayed growth and flowering and lower carbohydrate storage. The observed effects will likely have an impact on next year's survival of buried plants. Our results have implications for the management of this important coastal plant.

  19. Nitrogen Fixation Associated with Rinsed Roots and Rhizomes of the Eelgrass Zostera marina.

    PubMed

    Capone, D G; Budin, J M

    1982-12-01

    Nitrogen fixation was associated with the rinsed roots and rhizomes of the seagrass, Zostera marina L. Nitrogenase activity (acetylene reduction) was greater on rhizomes compared to roots, and on older roots and rhizomes relative to younger tissue. Compared to aerobic assays, anaerobic or microaerobic conditions enhanced the rate of acetylene reduction by rhizomes with attached roots, with the highest activity (100 nanomoles per gram dry weight per hour) occurring at pO(2) = 0.01 atmosphere. Addition of glucose, sucrose, or succinate also increased the rate of acetylene reduction under anaerobic conditions, with glucose providing the most stimulation. In one experiment, comparison of acetylene reduction assays with (15)N(2) incorporation yielded a ratio of about 2.6:1. Seagrass communities are thought to be limited by the availability of nitrogen and, therefore, nitrogenase activity directly associated with their roots and rhizomes suggests the possibility of a N(2)-fixing flora which may subsidize their nutritional demand for nitrogen.

  20. Release and Consumption of DMSP from Emiliania Huxleyi during grazing by Oxyrrhis Marina

    NASA Technical Reports Server (NTRS)

    Wolfe, Gordon V.; Sherr, Evelyn B.; Sherr, Barry F.

    1994-01-01

    Degradation and release to solution of intracellular dimethylsulfoniopropionate (DMSP) from Emiliania huxleyi 370 was observed during grazing by the heterotrophic dinoflagellate Oxyrrhis marina in 24 h bottle incubations. Between 30 and 70% of the lost algal DMSP was metabolized by the grazers without production of dimethylsulfide (DMS) when grazer densities were 150 to 450/ml. The rest was released to solution and about 30% was converted to DMS by bacteria associated with the grazer culture. These experiments demonstrate that grazing by herbivorous protists may be an important sink for DMSP in marine waters, removing a potential source of DMS. Microzooplankton grazing may also indirectly increase the production of DMS by transferring algal DMSP to the dissolved pool, making it available for bacterial metabolism.

  1. Kinetics of phyllosemiquinone oxidation in the Photosystem I reaction centre of Acaryochloris marina.

    PubMed

    Santabarbara, Stefano; Bailleul, Benjamin; Redding, Kevin; Barber, James; Rappaport, Fabrice; Telfer, Alison

    2012-02-01

    Light-induced electron transfer reactions in the chlorophyll a/d-binding Photosystem I reaction centre of Acaryochloris marina were investigated in whole cells by pump-probe optical spectroscopy with a temporal resolution of ~5ns at room temperature. It is shown that phyllosemiquinone, the secondary electron transfer acceptor anion, is oxidised with bi-phasic kinetics characterised by lifetimes of 88±6ns and 345±10ns. These lifetimes, particularly the former, are significantly slower than those reported for chlorophyll a-binding Photosystem I, which typically range in the 5-30ns and 200-300ns intervals. The possible mechanism of electron transfer reactions in the chlorophyll a/d-binding Photosystem I and the slower oxidation kinetics of the secondary acceptors are discussed. PMID:22037394

  2. Prauserella marina sp. nov., isolated from ocean sediment of the South China Sea.

    PubMed

    Wang, Jian; Li, Yan; Bian, Jiang; Tang, Shu-Kun; Ren, Biao; Chen, Ming; Li, Wen-Jun; Zhang, Li-Xin

    2010-04-01

    A novel actinomycete strain, designated MS498(T), was isolated from an ocean sediment sample collected from the South China Sea. It was subjected to a polyphasic analysis to determine its taxonomic position. The phylogenetic tree based on 16S rRNA gene sequences showed that strain MS498(T) had the highest similarity (96.5 %) with members of the genus Prauserella and was loosely associated with Prauserella rugosa DSM 43194(T) and Saccharomonospora halophila DSM 44411(T). Based on 16S rRNA gene sequence analysis, phenotypic characteristics and chemotaxonomic data, the new isolate is proposed to represent a novel species of the genus Prauserella, named Prauserella marina sp. nov. (type strain MS498(T)=CCTCC AA 208056( T) =DSM 45268(T)).

  3. DESICCATION INDEX: A MEASURE OF DAMAGE CAUSED BY ADVERSE AERIAL EXPOSURE ON INTERTIDAL EELGRASS (ZOSTERA MARINA) IN AN OREGON (USA) ESTUARY

    EPA Science Inventory

    Eelgrass (Zostera marina) blade necrosis resulting from intertidal aerial exposure is describe. A desiccation index was developed to quantitatively assess this damage. This index was then used to evaluate the extent of desiccation damage across intertidal bathymetric slopes (st...

  4. Mortality rate estimation for eelgrass Zostera marina (Potamogetonaceae) using projections from Leslie matrices.

    PubMed

    Flores Uzeta, Olga; Solana Arellano, Elena; Echavarría Heras, Héctor

    2008-09-01

    The main goal of this study is to provide estimations of mean mortality rate of vegetative shoots of the seagrass Zostera marina in a meadow near Ensenada Baja California, using a technique that minimizes destructive sampling. Using cohorts and Leslie matrices, three life tables were constructed, each representing a season within the period of monthly sampling (April 1999 to April 2000). Ages for the cohorts were established in terms of Plastochrone Interval (PI). The matrices were projected through time to estimate the mean total number of individuals at time t, n(t) as well as mortality. We found no statistical differences between observed and predicted mean values for these variables (t = -0.11, p = 0.92 for n(t) and t = 0.69, p = 0.5 for mean rate of mortality). We found high correlation coefficient values between observed and projected values for monthly number of individuals (r = 0.70, p = 0.007) and monthly mortality rates (r = 0.81, p = 0.001). If at a certain time t a sudden environmental change occurs, and as long as the perturbation does not provoke the killing of all the individuals of a given age i for 0 < or = i < or = x - 1, there will be a prevailing number of individuals of age or stage x at a time t+1. This nondestructive technique reduces the number of field visits and samples needed for the demographic analysis of Z. marina, and therefore decreases the disturbance caused by researches to the ecosystem. PMID:19419024

  5. Photoacclimatory Responses of Zostera marina in the Intertidal and Subtidal Zones.

    PubMed

    Park, Sang Rul; Kim, Sangil; Kim, Young Kyun; Kang, Chang-Keun; Lee, Kun-Seop

    2016-01-01

    Photoacclimatory responses of the seagrass Zostera marina in the intertidal and subtidal zones were investigated by measuring chlorophyll a fluorescence parameters, photosynthetic pigments, leaf δ13C values, and shoot morphology in two bay systems. Intertidal plants had higher carotenoid concentrations than subtidal plants to avoid photodamage under excess light conditions during the day. The maximum relative electron transport rate (rETRmax) and minimum saturation irradiance (Ek) of the intertidal plants were higher than those of the subtidal plants, whereas photosynthetic efficiency (α) and maximum quantum yield (Fv/Fm) were higher in subtidal plants. The intertidal plants also had significantly greater Stern-Volmer non-photochemical quenching (NPQ) than that of the subtidal plants. These results suggest that the subtidal plants photoacclimated to use limited light more efficiently, and the intertidal plants exhibited photosynthetic responses to minimize photodamage at excess irradiance. The δ13C values of leaf tissues were more negative in the intertidal plants than those in the subtidal plants, suggesting that the intertidal plants used atmospheric or dissolved CO2 for photosynthesis during emersion. Effective quantum yield (ΔF/Fm´) in the intertidal plants decreased more slowly after emersion than that in the subtidal plants, indicating higher desiccation tolerance of the intertidal plants. The intertidal plants also recovered more rapidly from desiccation damage than the subtidal plants, suggesting photosynthetic adaptation to desiccation stress. The photosynthetic plasticity of Z. marina in response to variable environmental conditions most likely allows this species to occur in the intertidal and subtidal zones. PMID:27227327

  6. Size matters: insights from an allometric approach to evaluate control methods for invasive Australian Rhinella marina.

    PubMed

    Beaty, Lynne E; Salice, Christopher J

    2013-10-01

    Invasive species are costly and difficult to control. In order to gain a mechanistic understanding of potential control measures, individual-based models uniquely parameterized to reflect the salient life-history characteristics of invasive species are useful. Using invasive Australian Rhinella marina as a case study, we constructed a cohort- and individual-based population simulation that incorporates growth and body size of terrestrial stages. We used this allometric approach to examine the efficacy of nontraditional control methods (i.e., tadpole alarm chemicals and native meat ants) that may have indirect effects on population dynamics mediated by effects on body size. We compared population estimates resulting from these control methods with traditional hand removal. We also conducted a sensitivity analysis to investigate the effect that model parameters, specifically those associated with growth and body size, had on adult population estimates. Incremental increases in hand removal of adults and juveniles caused nonlinear decreases in adult population estimates, suggesting less return with increased investment in hand-removal efforts. Applying tadpole alarm chemicals or meat ants decreased adult population estimates on the same level as removing 15-25% of adults and juveniles by hand. The combined application of tadpole alarm chemicals and meat ants resulted in approximately 80% decrease in adult abundance, the largest of any applied control method. In further support of the nontraditional control methods, which greatly affected the metamorph stage, our model was most sensitive to changes in metamorph survival, juvenile survival, metamorph growth rate, and adult survival. Our results highlight the use and insights that can be gained from individual-based models that incorporate growth and body size and the potential success that nontraditional control methods could have in controlling established, invasive Rhinella marina populations. PMID:24261039

  7. Mortality rate estimation for eelgrass Zostera marina (Potamogetonaceae) using projections from Leslie matrices.

    PubMed

    Flores Uzeta, Olga; Solana Arellano, Elena; Echavarría Heras, Héctor

    2008-09-01

    The main goal of this study is to provide estimations of mean mortality rate of vegetative shoots of the seagrass Zostera marina in a meadow near Ensenada Baja California, using a technique that minimizes destructive sampling. Using cohorts and Leslie matrices, three life tables were constructed, each representing a season within the period of monthly sampling (April 1999 to April 2000). Ages for the cohorts were established in terms of Plastochrone Interval (PI). The matrices were projected through time to estimate the mean total number of individuals at time t, n(t) as well as mortality. We found no statistical differences between observed and predicted mean values for these variables (t = -0.11, p = 0.92 for n(t) and t = 0.69, p = 0.5 for mean rate of mortality). We found high correlation coefficient values between observed and projected values for monthly number of individuals (r = 0.70, p = 0.007) and monthly mortality rates (r = 0.81, p = 0.001). If at a certain time t a sudden environmental change occurs, and as long as the perturbation does not provoke the killing of all the individuals of a given age i for 0 < or = i < or = x - 1, there will be a prevailing number of individuals of age or stage x at a time t+1. This nondestructive technique reduces the number of field visits and samples needed for the demographic analysis of Z. marina, and therefore decreases the disturbance caused by researches to the ecosystem.

  8. Growth dynamics of eelgrass, Zostera marina, in the intertidal zone of Seomjin Estuary, Korea

    NASA Astrophysics Data System (ADS)

    Kim, Jeong Bae; Lee, Won-Chan; Lee, Kun-Seop; Park, Jung-Im

    2013-09-01

    To examine the growth dynamics of eelgrass, Zostera marina, in the intertidal zone of Seomjin Estuary, Korea, we surveyed environmental factors such as water temperature, underwater irradiance, tidal exposure, and nutrient concentrations in the water column and sediment pore water in relation to the shoot density, biomass, morphological characteristics, and growth of Z. marina inhabiting the upper and lower intertidal zones. The survey was conducted monthly from January 2003 to December 2004. The water temperature of the two areas displayed seasonal fluctuations. Underwater irradiance was significantly higher in the upper intertidal zone than in the lower intertidal zone. Tidal exposure was also markedly longer in the upper intertidal zone than in the lower intertidal zone, whereas tidal exposure was highest in the spring and lowest in the summer in both areas. Water column NH4 + and sediment pore water NO3 -+NO2 - concentrations were significantly higher in the upper intertidal zone than the lower intertidal zone. The eelgrass shoot density, biomass, morphology, and leaf productivity were significantly higher in the lower intertidal zone than in the upper intertidal zone. Both areas displayed a clear seasonal variation depending on changes in water temperature. However, leaf turnover time was significantly shorter in the upper intertidal zone than in the lower intertidal zone, with a higher turnover rate in the upper intertidal zone. Compared to the seagrasses in the lower intertidal zone, those in the upper intertidal zone showed more effective adaptations to the stress of long tidal exposure through downsizing and increased turnover time. These results suggest that tidal exposure, coupled with desiccation stress, can be a limiting factor for seagrass growth in the intertidal zone, along with underwater irradiance, water temperature, and nutrient availability.

  9. Photoacclimatory Responses of Zostera marina in the Intertidal and Subtidal Zones

    PubMed Central

    Park, Sang Rul; Kim, Sangil; Kim, Young Kyun; Kang, Chang-Keun; Lee, Kun-Seop

    2016-01-01

    Photoacclimatory responses of the seagrass Zostera marina in the intertidal and subtidal zones were investigated by measuring chlorophyll a fluorescence parameters, photosynthetic pigments, leaf δ13C values, and shoot morphology in two bay systems. Intertidal plants had higher carotenoid concentrations than subtidal plants to avoid photodamage under excess light conditions during the day. The maximum relative electron transport rate (rETRmax) and minimum saturation irradiance (Ek) of the intertidal plants were higher than those of the subtidal plants, whereas photosynthetic efficiency (α) and maximum quantum yield (Fv/Fm) were higher in subtidal plants. The intertidal plants also had significantly greater Stern–Volmer non-photochemical quenching (NPQ) than that of the subtidal plants. These results suggest that the subtidal plants photoacclimated to use limited light more efficiently, and the intertidal plants exhibited photosynthetic responses to minimize photodamage at excess irradiance. The δ13C values of leaf tissues were more negative in the intertidal plants than those in the subtidal plants, suggesting that the intertidal plants used atmospheric or dissolved CO2 for photosynthesis during emersion. Effective quantum yield (ΔF/Fm´) in the intertidal plants decreased more slowly after emersion than that in the subtidal plants, indicating higher desiccation tolerance of the intertidal plants. The intertidal plants also recovered more rapidly from desiccation damage than the subtidal plants, suggesting photosynthetic adaptation to desiccation stress. The photosynthetic plasticity of Z. marina in response to variable environmental conditions most likely allows this species to occur in the intertidal and subtidal zones. PMID:27227327

  10. Antibacterial potential of biosynthesised silver nanoparticles using Avicennia marina mangrove plant

    NASA Astrophysics Data System (ADS)

    Gnanadesigan, M.; Anand, M.; Ravikumar, S.; Maruthupandy, M.; Syed Ali, M.; Vijayakumar, V.; Kumaraguru, A. K.

    2012-06-01

    The present study was aimed to identify the antibacterial potential of biosynthesised silver nanoparticles using different plant parts (leaves, bark and root) of Avicenna marina mangrove plant. Of the selected three different parts, the leaf extract showed the maximum synthesis of silver nanoparticles. The in vitro antibacterial assay (100 μg disk-1 concentration) showed the results of maximum zone of inhibition with the E. coli (18.40 ± 0.97 mm), and minimum (10.87 ± 1.33 mm) zone of inhibition with S. aureus but the concentrations of MIC and MBC values ranged between 6.25 and 50.0 μg ml-1 between the selected bacterial strains. The FTIR results of most potent leaf extract-synthesized silver nanoparticles showed the prominent peaks (620.967; 1,061.02; 1,116.58; 1,187.94; 1,280.50; 1,353.79; 1,384.64; 1,598.50; 1,629.56; 2,854.14 and 2,927.42) in different ranges. Further, the results of XRD analysis showed the 2 θ intense values (38.11 and 70.57) within the ranges of Bragg's reflection. In addition, the AFM analysis showed the results of particle sizes (71-110 nm), particle roughness (11.8 nm), maximum height of the particle roughness (111.8 nm), and average maximum height of the particle roughness (57.5 nm). It can be concluded from the present findings that, the biosynthesis of silver nanoparticles from the leaf extract of A. marina can be used as potential antibacterial agents.

  11. Marine Isolates of Trimastix marina Form a Plesiomorphic Deep-branching Lineage within Preaxostyla, Separate from Other Known Trimastigids (Paratrimastix n. gen.).

    PubMed

    Zhang, Qianqian; Táborský, Petr; Silberman, Jeffrey D; Pánek, Tomáš; Čepička, Ivan; Simpson, Alastair G B

    2015-09-01

    Trimastigids are free-living, anaerobic protists that are closely related to the symbiotic oxymonads, forming together the taxon Preaxostyla (Excavata: Metamonada). We isolated fourteen new strains morphologically corresponding to two species assigned to Trimastix (until now the only genus of trimastigids), Trimastix marina and Trimastix pyriformis. Unexpectedly, marine strains of Trimastix marina branch separately from freshwater strains of this morphospecies in SSU rRNA gene trees, and instead form the sister group of all other Preaxostyla. This position is confirmed by three-gene phylogenies. Ultrastructural examination of a marine isolate of Trimastix marina demonstrates a combination of trimastigid-like features (e.g. preaxostyle-like I fibre) and ancestral characters (e.g. absence of thickened flagellar vane margins), consistent with inclusion of marine T. marina within Preaxostyla, but also supporting its distinctiveness from 'freshwater T. marina' and its deep-branching position within Preaxostyla. Since these results indicate paraphyly of Trimastix as currently understood, we transfer the other better-studied trimastigids to Paratrimastix n. gen. and Paratrimastigidae n. fam. The freshwater form previously identified as T. marina is described as Paratrimastix eleionoma n. sp., and Trimastix pyriformis becomes Paratrimastix pyriformis n. comb. Because of its phylogenetic position, 'true' Trimastix is potentially important for understanding the evolution of mitochondrion-related organelles in metamonads.

  12. The role of marinas and recreational boating in the occurrence and distribution of exotic caprellids (Crustacea: Amphipoda) in the Western Mediterranean: Mallorca Island as a case study

    NASA Astrophysics Data System (ADS)

    Ros, Macarena; Vázquez-Luis, Maite; Guerra-García, José M.

    2013-10-01

    In the Mediterranean Sea, the number of alien marine crustacean species has increased over the past two decades. However, knowledge about small alien marine crustaceans, like caprellid amphipods, is still very scarce. To understand the role of marinas and recreational boating in the early step of the invasion process by non-indigenous caprellids, we studied the recreational boating pressure and the spatial distribution of caprellid species in Mallorca Island. We collected caprellids from 14 marinas and 9 exposed intertidal rocky shores between November 2011 and April 2012 and we analyzed the differences in habitat use of native and exotic caprellids. Eight caprellid species, six native and two exotic, were found. Alien caprellids were only present in marinas, reaching high densities of population. The analysis of recreational boating pressure reveals that Palma-Migjorn is the area that is subject to the highest potential risk of introduction of exotic species via ship fouling. In the secondary dispersal of alien caprellids, the study reflects that recreational boating seems effective as a secondary vector in the transport of exotic species from marinas to marinas but not from marinas to natural and exposed areas. An illustrated key of caprellids from Balearic Island is provided to differentiate native and non-indigenous species.

  13. Changes of plasma membrane AtPase activity, membrane potential and transmembrane proton gradient in Kandelia candel and Avicennia marina seedlings with various salinities.

    PubMed

    Zhao, Zhong-Qiu; Zheng, Hai-Lei; Zhu, Yong-Guan

    2004-01-01

    The salt-secreting mangrove, Avicennia marina, and non-salt-secreting mangrove, Kandelia candel were cultivated in sand with various salinities(0 per thousand, 10 per thousand, 20 per thousand, 30 per thousand, 40 per thousand) for 60 d. Plasma membrane vesicles of high-purity in leaves and roots of A. marina and K. candel seedlings were obtained by two-phase partitioning. The function of the plasma membranes, the activity of ATPase, membrane potential and transmembrane proton gradient, at various salinities were investigated. The results showed that within a certain range of salinity (A. marina and roots of K. candel: 0-30 per thousand; leaves of K. candel: 0-20 per thousand), the activity of ATPase increased with increasing salinity, while high salinity (above 30 per thousand or 20 per thousand) inhibited ATPase activity. In comparison with A. marina, K. candel appeared to be more sensitive to salinity. The dynamics of membrane potential and transmembrane proton gradient in leaves and roots of A. marina and K. candel seedlings were similar to that of ATPase. When treated directly by NaCl all the indexes were inhibited markedly: there was a little increase within 0-10 per thousand (K. candel) or 0-20 per thousand (A. marina) followed by sharp declining. It indicated that the structure and function of plasma membrane was damaged severely.

  14. Before and after wasting disease in common eelgrass Zostera marina along the French Atlantic coasts: a general overview and first accurate mapping.

    PubMed

    Godet, Laurent; Fournier, Jérôme; van Katwijk, Marieke M; Olivier, Frédéric; Le Mao, Patrick; Retière, Christian

    2008-05-01

    We examined the original manuscripts of a French national survey conducted in 1933 on the state of common eelgrass Zostera marina beds along the French Atlantic coasts during the period when wasting disease struck the entire North Atlantic population in the 1930s. Based on GIS related techniques and old sets of aerial photographs, we present the first accurate mapping of the Z. marina beds before wasting disease occurred and assess their spatial recolonization since the 1950s in the Chausey Archipelago (France), which contains large Z. marina beds. The national survey confirmed that the Z. marina beds almost totally disappeared from the French coasts during the 1930s. However, the disease symptoms seem to have begun locally a few years before. On the study site, we found that the Z. marina beds were more than twice as extended than as they are today, and covered both subtidal and intertidal areas. By the 1950s, 20 yr after the onset of the disease, the beds had hardly recolonized, and contrary to the recolonization patterns reported elsewhere in Europe, they were mainly restricted to subtidal areas. The subtidal and intertidal Z. marina beds on the site are now rapidly expanding.

  15. Assessment of trace metal bioaccumulation by Avicennia marina (Forsk.) in the last remaining mangrove stands in Manila Bay, the Philippines.

    PubMed

    Gabriel, Ana Veronica S; Salmo, Severino G

    2014-12-01

    Concentrations of lead (Pb), copper (Cu), zinc (Zn), and cadmium (Cd) were evaluated in the sediments, roots and leaves of a mangrove species (Avicennia marina) in Las Piñas-Parañaque Critical Habitat and Ecotourism Area (LPPCHEA), Manila Bay. The concentrations showed a general pattern of Zn > Pb > Cu > Cd in sediments, Cu > Pb > Zn > Cd in roots and Cu > Zn > Pb > Cd in leaves. The trace metal concentrations in both sediments and plant tissues were below contamination threshold levels. Based on computed bioaccumulation indices, A. marina could be used for the phytostabilization and phytoextraction of Cu and Cd. The LPPCHEA mangrove ecosystem is an ecologically important ecosystem that will limit the spread of trace metals to the surrounding environment. PMID:25365960

  16. Morphological characterization of Eustrongylides sp. larvae (Nematoda, Dioctophymatoidea) parasite of Rhinella marina (Amphibia: Bufonidae) from Eastern Amazonia.

    PubMed

    Melo, Francisco Tiago de Vasconcelos; Melo, Caroline do Socorro Barros; Nascimento, Luciana de Cássia Silva do; Giese, Elane Guerreiro; Furtado, Adriano Penha; Santos, Jeannie Nascimento Dos

    2016-06-01

    Absctract Eustrongylides spp. nematodes have birds as final hosts and uses other vertebrates as intermediate/paratenic host (fish, amphibians and reptiles) and have zoonotic potential. In amphibians, the larvae may be located in the subcutaneous tissues, liver and mesentery, between the muscle fibres, especially in the lower limbs. Rhinella marina, which is widely observed in Brazil, has exhibited complex diversity in its helminth fauna, reflecting the unique habitat of the Amazon biome. For the first time, this study describes the morphological aspects of third-stage larvae of Eustrongylides sp. in Rhinella marina from Santa Cruz do Ararí, Marajó Archipelago, Eastern Amazonia, using light and scanning electron microscopy. PMID:27276665

  17. Morphological characterization of Eustrongylides sp. larvae (Nematoda, Dioctophymatoidea) parasite of Rhinella marina (Amphibia: Bufonidae) from Eastern Amazonia.

    PubMed

    Melo, Francisco Tiago de Vasconcelos; Melo, Caroline do Socorro Barros; Nascimento, Luciana de Cássia Silva do; Giese, Elane Guerreiro; Furtado, Adriano Penha; Santos, Jeannie Nascimento Dos

    2016-06-01

    Absctract Eustrongylides spp. nematodes have birds as final hosts and uses other vertebrates as intermediate/paratenic host (fish, amphibians and reptiles) and have zoonotic potential. In amphibians, the larvae may be located in the subcutaneous tissues, liver and mesentery, between the muscle fibres, especially in the lower limbs. Rhinella marina, which is widely observed in Brazil, has exhibited complex diversity in its helminth fauna, reflecting the unique habitat of the Amazon biome. For the first time, this study describes the morphological aspects of third-stage larvae of Eustrongylides sp. in Rhinella marina from Santa Cruz do Ararí, Marajó Archipelago, Eastern Amazonia, using light and scanning electron microscopy. PMID:27334826

  18. [Marina de Vasconcellos and the social sciences in Rio de Janeiro: a study of the social circles].

    PubMed

    Ribeiro, Adelia Maria Miglievich

    2008-06-01

    An investigation of the career of one of the "founding mothers" of the social sciences in Rio de Janeiro, Marina de Vasconcellos, successor of Arthur Ramos, is one way of understanding how anthropology was established in Rio de Janeiro. Conflicts and alliances, continuities and discontinuities, lie behind the pioneering Brazilian Society of Anthropology and Ethnology and the Institute of Social Sciences, both at Faculdade Nacional de Filosofia. Marina de Vasconcellos' professional life bore the marks of the clash between different schools of thought regarding anthropology at a time when university courses were being introduced. As a professor, she was committed to educating new professionals, and in 1968, she was steadfast in the struggle for university autonomy. The study leads to a reflection upon the criteria for success in academia, countering the view that this depends entirely on the publication of books and articles.

  19. High-quality-draft genome sequence of the yellow-pigmented flavobacterium Joostella marina type strain (En5T)

    PubMed Central

    Stackebrandt, Erko; Chertkov, Olga; Lapidus, Alla; Nolan, Matt; Lucas, Susan; Han, Cliff; Cheng, Jan-Fang; Tapia, Roxanne; Goodwin, Lynne A.; Bruce, David; Pitluck, Sam; Liolios, Konstantinos; Mavromatis, Konstantinos; Pagani, Ioanna; Ivanova, Natalia; Mikhailova, Natalia; Huntemann, Marcel; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Rohde, Manfred; Tindall, Brian J.; Göker, Markus; Woyke, Tanja; Detter, John C.; Bristow, James; Eisen, Jonathan A.; Markowitz, Victor; Hugenholtz, Philip; Klenk, Hans-Peter; Kyrpides, Nikos C.

    2013-01-01

    At present, Joostella marina Quan et al. 2008 is the sole species with a validly published name in the genus Joostella, family Flavobacteriacae, phylum Bacteriodetes. It is a yellow-pigmented, aerobic, marine organism about which little has been reported other than the chemotaxonomic features required for initial taxonomic description. The genome of J. marina strain En5T complements a list of 16 Flavobacteriaceae strains for which complete genomes and draft genomes are currently available. Here we describe the features of this bacterium, together with the complete genome sequence, and annotation. This is the first member of the genus Joostella for which a complete genome sequence becomes available. The 4,508,243 bp long single replicon genome with its 3,944 protein-coding and 60 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project. PMID:23961310

  20. Assessment of trace metal bioaccumulation by Avicennia marina (Forsk.) in the last remaining mangrove stands in Manila Bay, the Philippines.

    PubMed

    Gabriel, Ana Veronica S; Salmo, Severino G

    2014-12-01

    Concentrations of lead (Pb), copper (Cu), zinc (Zn), and cadmium (Cd) were evaluated in the sediments, roots and leaves of a mangrove species (Avicennia marina) in Las Piñas-Parañaque Critical Habitat and Ecotourism Area (LPPCHEA), Manila Bay. The concentrations showed a general pattern of Zn > Pb > Cu > Cd in sediments, Cu > Pb > Zn > Cd in roots and Cu > Zn > Pb > Cd in leaves. The trace metal concentrations in both sediments and plant tissues were below contamination threshold levels. Based on computed bioaccumulation indices, A. marina could be used for the phytostabilization and phytoextraction of Cu and Cd. The LPPCHEA mangrove ecosystem is an ecologically important ecosystem that will limit the spread of trace metals to the surrounding environment.

  1. Structure, Aboveground Biomass, and Soil Characterization of Avicennia marina in Eastern Mangrove Lagoon National Park, Abu Dhabi

    NASA Astrophysics Data System (ADS)

    Alsumaiti, Tareefa Saad Sultan

    Mangrove forests are national treasures of the United Arab Emirates (UAE) and other arid countries with limited forested areas. Mangroves form a crucial part of the coastal ecosystem and provide numerous benefits to society, economy, and especially the environment. Mangrove trees, specifically Avicennia marina, are studied in their native habitat in order to characterize their population structure, aboveground biomass, and soil properties. This study focused on Eastern Mangrove Lagoon National Park in Abu Dhabi, which was the first mangrove protected area to be designated in UAE. In situ measurements were collected to estimate Avicennia marina status, mortality rate (%), height (m), crown spread (m), stem number, diameter at breast height (cm), basal area (m), and aboveground biomass (t ha-1 ). Small-footprint aerial light detection and ranging (LIDAR) data acquired by UAE were processed to characterize mangrove canopy height and aboveground biomass density. This included extraction of LIDAR-derived height percentile statistics, segmentation of the forest into structurally homogenous units, and development of regression relationships between in situ reference and remote sensing data using a machine learning approach. An in situ soil survey was conducted to examine the soils' physical and chemical properties, fertility status, and organic matter. The data of soil survey were used to create soil maps to evaluate key characteristics of soils, and their influence on Avicennia marina in Eastern Mangrove Lagoon National Park. The results of this study provide new insights into Avicennia marina canopy population, structure, aboveground biomass, and soil properties in Abu Dhabi, as data in such arid environments is lacking. This valuable information can help in managing and preserving this unique ecosystem.

  2. Growth responses of the mangrove Avicennia marina to salinity: development and function of shoot hydraulic systems require saline conditions

    PubMed Central

    Nguyen, Hoa T.; Stanton, Daniel E.; Schmitz, Nele; Farquhar, Graham D.; Ball, Marilyn C.

    2015-01-01

    Background and Aims Halophytic eudicots are characterized by enhanced growth under saline conditions. This study combines physiological and anatomical analyses to identify processes underlying growth responses of the mangrove Avicennia marina to salinities ranging from fresh- to seawater conditions. Methods Following pre-exhaustion of cotyledonary reserves under optimal conditions (i.e. 50 % seawater), seedlings of A. marina were grown hydroponically in dilutions of seawater amended with nutrients. Whole-plant growth characteristics were analysed in relation to dry mass accumulation and its allocation to different plant parts. Gas exchange characteristics and stable carbon isotopic composition of leaves were measured to evaluate water use in relation to carbon gain. Stem and leaf hydraulic anatomy were measured in relation to plant water use and growth. Key Results Avicennia marina seedlings failed to grow in 0–5 % seawater, whereas maximal growth occurred in 50–75 % seawater. Relative growth rates were affected by changes in leaf area ratio (LAR) and net assimilation rate (NAR) along the salinity gradient, with NAR generally being more important. Gas exchange characteristics followed the same trends as plant growth, with assimilation rates and stomatal conductance being greatest in leaves grown in 50–75 % seawater. However, water use efficiency was maintained nearly constant across all salinities, consistent with carbon isotopic signatures. Anatomical studies revealed variation in rates of development and composition of hydraulic tissues that were consistent with salinity-dependent patterns in water use and growth, including a structural explanation for low stomatal conductance and growth under low salinity. Conclusions The results identified stem and leaf transport systems as central to understanding the integrated growth responses to variation in salinity from fresh- to seawater conditions. Avicennia marina was revealed as an obligate halophyte

  3. High-quality draft genome sequence of Kocuria marina SO9-6, an actinobacterium isolated from a copper mine.

    PubMed

    Castro, Daniel B A; Pereira, Letícia Bianca; Silva, Marcus Vinícius M E; Silva, Bárbara P da; Palermo, Bruna Rafaella Z; Carlos, Camila; Belgini, Daiane R B; Limache, Elmer Erasmo G; Lacerda, Gileno V Jr; Nery, Mariana B P; Gomes, Milene B; Souza, Salatiel S de; Silva, Thiago M da; Rodrigues, Viviane D; Paulino, Luciana C; Vicentini, Renato; Ferraz, Lúcio F C; Ottoboni, Laura M M

    2015-09-01

    An actinobacterial strain, designated SO9-6, was isolated from a copper iron sulfide mineral. The organism is Gram-positive, facultatively anaerobic, and coccoid. Chemotaxonomic and phylogenetic properties were consistent with its classification in the genus Kocuria. Here, we report the first draft genome sequence of Kocuria marina SO9-6 under accession JROM00000000 (http://www.ncbi.nlm.nih.gov/nuccore/725823918), which provides insights for heavy metal bioremediation and production of compounds of biotechnological interest. PMID:26484219

  4. High-quality draft genome sequence of Kocuria marina SO9-6, an actinobacterium isolated from a copper mine

    PubMed Central

    Castro, Daniel B.A.; Pereira, Letícia Bianca; Silva, Marcus Vinícius M. e; Silva, Bárbara P. da; Palermo, Bruna Rafaella Z.; Carlos, Camila; Belgini, Daiane R.B.; Limache, Elmer Erasmo G.; Lacerda, Gileno V. Jr; Nery, Mariana B.P.; Gomes, Milene B.; Souza, Salatiel S. de; Silva, Thiago M. da; Rodrigues, Viviane D.; Paulino, Luciana C.; Vicentini, Renato; Ferraz, Lúcio F.C.; Ottoboni, Laura M.M.

    2015-01-01

    An actinobacterial strain, designated SO9-6, was isolated from a copper iron sulfide mineral. The organism is Gram-positive, facultatively anaerobic, and coccoid. Chemotaxonomic and phylogenetic properties were consistent with its classification in the genus Kocuria. Here, we report the first draft genome sequence of Kocuria marina SO9-6 under accession JROM00000000 (http://www.ncbi.nlm.nih.gov/nuccore/725823918), which provides insights for heavy metal bioremediation and production of compounds of biotechnological interest. PMID:26484219

  5. Geohydrology of deep-aquifer system monitoring-well site at Marina, Monterey County, California

    USGS Publications Warehouse

    Hanson, Randall T.; Everett, Rhett; Newhouse, Mark W.; Crawford, Steven M.; Pimentel, M. Isabel; Smith, Gregory A.

    2002-01-01

    In 2000, a deep-aquifer system monitoring-well site (DMW1) was completed at Marina, California to provide basic geologic and hydrologic information about the deep-aquifer system in the coastal region of the Salinas Valley. The monitoring-well site contains four wells in a single borehole; one completed from 930 to 950 feet below land surface (bls) in the Paso Robles Formation (DMW1-4); one 1,040 to 1,060 feet below land surface in the upper Purisima Formation (DMW1-3); one from 1,410 to 1,430 feet below land surface in the middle Purisima Formation (DMW1-2); and one from 1,820 to 1,860 feet below land surface in the lower Purisima Formation (DMW1-1). The monitoring site is installed between the coast and several deep-aquifer system supply wells in the Marina Coast Water District, and the completion depths are within the zones screened in those supply wells. Sediments below a depth of 955 feet at DMW1 are Pliocene age, whereas the sediments encountered at the water-supply wells are Pleistocene age at an equivalent depth. Water levels are below sea level in DMW1 and the Marina Water District deep-aquifer system supply wells, which indicate that the potential for seawater intrusion exists in the deep-aquifer system. If the aquifers at DMW1 are hydraulically connected with the submarine outcrops in Monterey Bay, then the water levels at the DMW1 site are 8 to 27 feet below the level necessary to prevent seawater intrusion. Numerous thick fine-grained interbeds and confining units in the aquifer systems retard the vertical movement of fresh and saline ground water between aquifers and restrict the movement of seawater to narrow water-bearing zones in the upper-aquifer system.Hydraulic testing of the DMW1 and the Marina Water District supply wells indicates that the tested zones within the deep-aquifer system are transmissive water-bearing units with hydraulic conductivities ranging from 2 to 14.5 feet per day. The hydraulic properties of the supply wells and monitoring

  6. Forest structure and litter production of naturally re-generated white mangrove Avicennia marina in sub-tropical estuarine coast.

    PubMed

    Abu Hena, M K; Sidik, B Japar; Idris, M H; Nesarul, M H; Aysha, A; Islam, M S; Nazmul, H

    2015-09-01

    The present work deals with plant structure, phenology, litter production and decomposition of mangrove Avicennia marina in the newly re-generated mangrove forest in sub-tropical coast. The natural generation in this accreted coastal land of mono-specific A. marina forest stand was prominent, with 45% seedlings and 32% saplings. Peak flowering and fruiting were noticed in May and August, respectively. Reproductive components contribute countable percent into the total litter production during the peak flowering (60%) and fruiting (86%) season. The percentage of leaf litter fall fluctuated throughout the year and contributed 13-99% (73% in average) of the total litter production of 11.53 tones ha(-1)'yr(-1). The total litter production differed with season and influenced by local climate, pore water salinity and phenology of the mangrove. The naturally generated young (7 years) A. marina with 1.8 m height produced more leaf litter as compared to similar tree height elsewhere. Decomposition rate was related to season, with higher litter loss during rainy season which could help cycling nutrients and support estuarine food web by supplying organic matter into the sub-tropical coastal environment. PMID:26521566

  7. Bioaccumulation and distribution of metals in sediments and Avicenna marina tissues in the Hara Biosphere Reserve, Iran.

    PubMed

    Nowrouzi, Mohsen; Pourkhabbaz, Alireza; Rezaei, Mohammadreza

    2012-10-01

    The metal pollution in Sediments and Avicenna marina tissues in the Hara Biosphere Reserve was monitored for Lead (Pb), Cadmium (Cd), and Nickel (Ni) with atomic absorption spectrometer. The results showed that the mean concentration of Pb, Cd, and Ni in the water and sediments were much higher than the recommended threshold limits in the most stations, also the highest means of Pb, Cd, and Ni were observed in Avicenna roots and it were 25.26 ± 4.86, 2.17 ± 0.74, and 26.72 ± 6.17 (μg g(-1)) respectively. Calculating BCF (bioconcentration factor) index illustrates that A. marina accumulates Pb, Cd, and Ni 1.62, 1.52 and 0.73 times greater than sediment levels respectively, So it can show that A. marina may be employed as a biological indicator exposure of Cd, Pb, and Ni with temporal monitoring, also the factories were main sources of metals contamination in the Hara Biosphere Reserve.

  8. Anonymous nuclear loci in the white-faced storm-petrel Pelagodroma marina and their applicability to other Procellariiform seabirds.

    PubMed

    Silva, Mónica C; Duarte, Margarida A; Coelho, M Manuela

    2011-01-01

    Procellariiform seabirds are among the avian species with the fastest rates of extinction due to interactions with fisheries and introduction of alien predators to the breeding colonies. Conservation and management policies targeting populations of these species must include information on colony demographics and levels of isolation and genetic markers go a long way toward providing reliable estimates of these parameters. To this end, we report isolation and characterization of 14 anonymous nuclear loci, with average length of 657 bp, in the pelagic seabird White-faced Storm-petrel Pelagodroma marina, a species for which there is virtually no genetic information available. These loci, initially isolated from a genomic library built from P. marina, were further tested, for a range of conditions, in 7 other species representing all Procellariiform families. We found high levels of cross-species amplification success, varying between 79% and 86% in representatives of Diomedeidae, Procellariidae, Pelecanoididae, and other Hydrobatidae. We also sequenced 11 loci for 22 P. marina individuals and report higher levels of anonymous genetic variation (π = 0.002), with an average of 1 single nucleotide polymorphism every 100 bp surveyed, relative to the levels found on a typically variable intron in avian species. These markers will be a valuable tool in future population genetics and phylogenetic studies, particularly of nonmodel seabird species. PMID:21447754

  9. Texture and composition of the Rosa Marina beach sands (Adriatic coast, southern Italy): a sedimentological/ecological approach

    NASA Astrophysics Data System (ADS)

    Moretti, Massimo; Tropeano, Marcello; Loon, A. J. (Tom) van; Acquafredda, Pasquale; Baldacconi, Rossella; Festa, Vincenzo; Lisco, Stefania; Mastronuzzi, Giuseppe; Moretti, Vincenzo; Scotti, Rosa

    2016-06-01

    Beach sands from the Rosa Marina locality (Adriatic coast, southern Italy) were analysed mainly microscopically in order to trace the source areas of their lithoclastic and bioclastic components. The main cropping out sedimentary units were also studied with the objective to identify the potential source areas of lithoclasts. This allowed to establish how the various rock units contribute to the formation of beach sands. The analysis of the bioclastic components allows to estimate the actual role of organisms regarding the supply of this material to the beach. Identification of taxa that are present in the beach sands as shell fragments or other remains was carried out at the genus or family level. Ecological investigation of the same beach and the recognition of sub-environments (mainly distinguished on the basis of the nature of the substrate and of the water depth) was the key topic that allowed to establish the actual source areas of bioclasts in the Rosa Marina beach sands. The sedimentological analysis (including a physical study of the beach and the calculation of some statistical parameters concerning the grain-size curves) shows that the Rosa Marina beach is nowadays subject to erosion.

  10. Effects of conventional and biodegradable microplastics on a marine ecosystem engineer (Arenicola marina) and sediment nutrient cycling.

    PubMed

    Green, Dannielle Senga; Boots, Bas; Sigwart, Julia; Jiang, Shan; Rocha, Carlos

    2016-01-01

    Effects of microplastic pollution on benthic organisms and ecosystem services provided by sedimentary habitats are largely unknown. An outdoor mesocosm experiment was done to realistically assess the effects of three different types of microplastic pollution (one biodegradable type; polylactic acid and two conventional types; polyethylene and polyvinylchloride) at increasing concentrations (0.02, 0.2 and 2% of wet sediment weight) on the health and biological activity of lugworms, Arenicola marina (Linnaeus, 1758), and on nitrogen cycling and primary productivity of the sediment they inhabit. After 31 days, A. marina produced less casts in sediments containing microplastics. Metabolic rates of A. marina increased, while microalgal biomass decreased at high concentrations, compared to sediments with low concentrations or without microplastics. Responses were strongest to polyvinylchloride, emphasising that different materials may have differential effects. Each material needs to be carefully evaluated in order to assess their risks as microplastic pollution. Overall, both conventional and biodegradable microplastics in sandy sediments can affect the health and behaviour of lugworms and directly or indirectly reduce primary productivity of these habitats. PMID:26552519

  11. Effects of conventional and biodegradable microplastics on a marine ecosystem engineer (Arenicola marina) and sediment nutrient cycling.

    PubMed

    Green, Dannielle Senga; Boots, Bas; Sigwart, Julia; Jiang, Shan; Rocha, Carlos

    2016-01-01

    Effects of microplastic pollution on benthic organisms and ecosystem services provided by sedimentary habitats are largely unknown. An outdoor mesocosm experiment was done to realistically assess the effects of three different types of microplastic pollution (one biodegradable type; polylactic acid and two conventional types; polyethylene and polyvinylchloride) at increasing concentrations (0.02, 0.2 and 2% of wet sediment weight) on the health and biological activity of lugworms, Arenicola marina (Linnaeus, 1758), and on nitrogen cycling and primary productivity of the sediment they inhabit. After 31 days, A. marina produced less casts in sediments containing microplastics. Metabolic rates of A. marina increased, while microalgal biomass decreased at high concentrations, compared to sediments with low concentrations or without microplastics. Responses were strongest to polyvinylchloride, emphasising that different materials may have differential effects. Each material needs to be carefully evaluated in order to assess their risks as microplastic pollution. Overall, both conventional and biodegradable microplastics in sandy sediments can affect the health and behaviour of lugworms and directly or indirectly reduce primary productivity of these habitats.

  12. Excitation energy transfer in intact cells and in the phycobiliprotein antennae of the chlorophyll d containing cyanobacterium Acaryochloris marina.

    PubMed

    Theiss, Christoph; Schmitt, Franz-Josef; Pieper, Jörg; Nganou, Collins; Grehn, Moritz; Vitali, Marco; Olliges, Rachel; Eichler, Hans Joachim; Eckert, Hann-Jörg

    2011-08-15

    The cyanobacterium Acaryochloris marina is unique because it mainly contains Chlorophyll d (Chl d) in the core complexes of PS I and PS II instead of the usually dominant Chl a. Furthermore, its light harvesting system has a structure also different from other cyanobacteria. It has both, a membrane-internal chlorophyll containing antenna and a membrane-external phycobiliprotein (PBP) complex. The first one binds Chl d and is structurally analogous to CP43. The latter one has a rod-like structure consisting of three phycocyanin (PC) homohexamers and one heterohexamer containing PC and allophycocyanin (APC). In this paper, we give an overview on the investigations of excitation energy transfer (EET) in this PBP-light-harvesting system and of charge separation in the photosystem II (PS II) reaction center of A. marina performed at the Technische Universität Berlin. Due to the unique structure of the PBP antenna in A. marina, this EET occurs on a much shorter overall time scale than in other cyanobacteria. We also briefly discuss the question of the pigment composition in the reaction center (RC) of PS II and the nature of the primary donor of the PS II RC.

  13. Population structure of Zostera marina (eelgrass) on the western Atlantic coast is characterized by poor connectivity and inbreeding.

    PubMed

    Campanella, James J; Bologna, Paul A; Smalley, John V; Rosenzweig, Eric B; Smith, Stephanie M

    2010-01-01

    Zostera marina (eelgrass) can be found in the North Atlantic on the coast of Europe and on the east and west coasts of North America. Over the last 30 years, this once robust species has been reduced to sparse patchy populations due to disease and anthropogenic effects. In order to better understand the consequences of this devastation on the population genetics of the species, we have analyzed the population structure of western Atlantic Z. marina, employing microsatellite DNA polymorphisms. Although high fixation index values suggest moderate genetic differentiation among most of the Z. marina sites, population diversity was low. This lack of diversity was supported by a general dearth of observable heterozygotes in these sites; mean observed heterozygosity values (0.14-0.46) were lower than the mean expected heterozygosity values (0.57-0.81). Additionally, the mean F(IS) (coefficient of local inbreeding) values in these sites were positive, again indicating a surfeit of homozygotes. Allelic richness suggests that Chesapeake Bay has the greatest internal genetic diversity of the sites studied. Inbreeding seems prevalent in these American populations, suggesting possible reproductive fitness problems in the future. There is evidence of demographic bottlenecking and particularly low genetic diversity in Long Island. Northern Maine had the highest effective population size, suggesting a possible use in future restoration projects.

  14. Annual variation of biomass and photosynthesis in Zostera marina L. along the Pacific Coast of Baja California, Mexico

    USGS Publications Warehouse

    Cabello-Pasini, Alejandro; Munoz-Salazar, R.; Ward, D.H.

    2003-01-01

    Density, biomass, morphology, phenology and photosynthetic characteristics of Zostera marina were related to continuous measurements of in situ irradiance, attenuation coefficient and temperature at three coastal lagoons in Baja California, Mexico. In situ irradiance was approximately two-fold lower at San Quintin Bay (SQ) than at Ojo de Liebre Lagoon (OL) and San Ignacio Lagoon (SI). As a consequence of the greater irradiance plants at OL and SI were established 1 m deeper within the water column than those at SQ. At SQ, there was a four-fold variation in biomass of Z. marina caused by changes on shoot length and not shoot density, while at OL and SI biomass and shoot length did not fluctuate significantly throughout the year. Reproductive shoot density reached maximum values concomitantly with the greater irradiance during spring-summer, however, the density was approximately three-fold greater at SQ than at the southern coastal lagoons. While irradiance levels were two-fold greater at the southern lagoons, in general, photosynthetic characteristics were similar among all three lagoons. The hours of light saturated photosynthesis, calculated from their photosynthetic characteristics and irradiance measurements, suggest that photosynthesis of shoots from OL and SI are saturated for more than 6 h per day throughout the year, while shoots from SQ are likely light limited during approximately 15% of the year. Consequently, an increase in attenuation coefficient values in the water column will likely decrease light availability to Z. marina plants at SQ, potentially decreasing their survival.

  15. Massisteria marina has a sister: Massisteria voersi sp. nov., a rare species isolated from coastal waters of the Baltic Sea.

    PubMed

    Mylnikov, Alexander P; Weber, Felix; Jürgens, Klaus; Wylezich, Claudia

    2015-08-01

    For many years, the genus Massisteria (Cercozoa, Leucodictyida) comprised only one species, M. marina. This small species has a biphasic life cycle and feeds through filose, radiating pseudopodia. It has a distinct swimming form and is regularly detected in association with detritus aggregates. However, environmental sequences closely related to this species indicate a larger species richness than hitherto described for the genus Massisteria. Here we provide the first report of Massisteria voersi sp. nov., investigated with microscopic and molecular methods. Several strains of this new species were isolated from brackish water at a Baltic Sea coastal monitoring station. Their characteristics are typical of the genus. Massisteria voersi differs from M. marina by smaller cell size (2.3-3 μm vs. 2.5-9 μm) and absent fused motile cells. Additionally, in contrast to M. marina, the new species lacks a paranuclear body and its kinetosomes are arranged in parallel. Both species are quite distantly related regarding their 18S rRNA gene sequences. The sparse availability of environmental sequences closely related to M. voersi as well as our preliminary results from fluorescence in situ hybridization studies suggest that this new species is a representative of low-abundance populations comprising the so-called "rare biosphere."

  16. Direct and indirect effects of the herbicides Glyphosate, Bentazone and MCPA on eelgrass (Zostera marina).

    PubMed

    Nielsen, Line Winkel; Dahllöf, Ingela

    2007-04-20

    Eelgrass beds are important habitats for many organisms, but there has been a decline in the area covered by eelgrass during the last decades due to increased eutrophication resulting in increased shading from phytoplankton. The use of herbicides in terrestrial agriculture has also increased over the last century, and while the effects of herbicides on non-target organisms have been well studied in freshwater they are overlooked in coastal waters. It is not known if herbicides have any effect on the distribution of eelgrass (Zostera marina), or how natural phytoplankton communities respond to the same herbicides. Direct and indirect effects of the herbicides Glyphosate, Bentazone and MCPA both as single toxicants and as mixtures, on the eelgrass plants were investigated in this study. The direct effects on eelgrass were examined by measuring the four different endpoints; the relatively growth rate as length and weight, the chlorophyll a and b ratio, as well as the RNA-DNA ratio, at the end of a 3 days exposure period. The indirect effect was investigated by measuring the effect on a natural phytoplankton production from Roskilde Fjord six times during 1 year. The results showed that the chlorophyll a-b and RNA-DNA ratios were the most sensitive endpoints in single herbicide experiments. The effects of herbicide mixtures on eelgrass were much larger compared to the single substances. Nearly a halving was found for both the relatively growth rate in length and weight, and the RNA-DNA as well as the chlorophyll a-b ratios were also significant reduced. This indicates a possible synergistic effect, and calculations based on the concentration addition model indicate that the low concentrations mixture has a synergistic effect, whereas the high concentration mixture has an antagonistic effect on eelgrass (Z. marina). The low concentrations mixture is the one with the highest relevance for coastal areas. The effect on phytoplankton showed some variation over the year but

  17. The MARINA model (Model to Assess River Inputs of Nutrients to seAs): Model description and results for China.

    PubMed

    Strokal, Maryna; Kroeze, Carolien; Wang, Mengru; Bai, Zhaohai; Ma, Lin

    2016-08-15

    Chinese agriculture has been developing fast towards industrial food production systems that discharge nutrient-rich wastewater into rivers. As a result, nutrient export by rivers has been increasing, resulting in coastal water pollution. We developed a Model to Assess River Inputs of Nutrients to seAs (MARINA) for China. The MARINA Nutrient Model quantifies river export of nutrients by source at the sub-basin scale as a function of human activities on land. MARINA is a downscaled version for China of the Global NEWS-2 (Nutrient Export from WaterSheds) model with an improved approach for nutrient losses from animal production and population. We use the model to quantify dissolved inorganic and organic nitrogen (N) and phosphorus (P) export by six large rivers draining into the Bohai Gulf (Yellow, Hai, Liao), Yellow Sea (Yangtze, Huai) and South China Sea (Pearl) in 1970, 2000 and 2050. We addressed uncertainties in the MARINA Nutrient model. Between 1970 and 2000 river export of dissolved N and P increased by a factor of 2-8 depending on sea and nutrient form. Thus, the risk for coastal eutrophication increased. Direct losses of manure to rivers contribute to 60-78% of nutrient inputs to the Bohai Gulf and 20-74% of nutrient inputs to the other seas in 2000. Sewage is an important source of dissolved inorganic P, and synthetic fertilizers of dissolved inorganic N. Over half of the nutrients exported by the Yangtze and Pearl rivers originated from human activities in downstream and middlestream sub-basins. The Yellow River exported up to 70% of dissolved inorganic N and P from downstream sub-basins and of dissolved organic N and P from middlestream sub-basins. Rivers draining into the Bohai Gulf are drier, and thus transport fewer nutrients. For the future we calculate further increases in river export of nutrients. The MARINA Nutrient model quantifies the main sources of coastal water pollution for sub-basins. This information can contribute to formulation of

  18. Ecophysiological differences between three mangrove seedlings (Kandelia obovata, Aegiceras corniculatum, and Avicennia marina) exposed to chilling stress.

    PubMed

    Peng, Ya-Lan; Wang, You-Shao; Fei, Jiao; Sun, Cui-Ci; Cheng, Hao

    2015-10-01

    Although the cold-resistant ability of mangroves varies greatly with species, the physiological mechanism remains unclear. The chilling stress effects on morphological changes, photosynthetic pigments, reactive oxygen species (ROS), malondialdehyde (MDA) and several antioxidants, were studied in leaves of three mangrove seedlings (Kandelia obovata, Aegiceras corniculatum and Avicennia marina). Results showed that both K. obovata and A. corniculatum exhibited lighter chilling damage, lower chilling injury rates and higher survival rates compared to A. marina. Reductions of chlorophylls (Chls) were observed in all the three mangroves, and the highest was detected in A. marina. Significant increases in content of ROS (hydrogen peroxide, H2O2; hydroxyl radicals, OH⋅) and MDA were observed in both A. marina and A. corniculatum, whereas chilling stressed K. obovata showed a decrease in H2O2 content, constant OH⋅ level and instantaneous increase of MDA. The contents of proline and water-soluble protein exhibited similar stress-time dependent increases in all mangroves, while A. corniculatum showed the highest increase of proline and relatively higher increase of water-soluble protein. The catalase activities significantly decreased with stress time in all mangroves, while K. obovata showed the least reduction. An increase in ascorbic acid (AsA) content and activities of superoxide dismutase, peroxidase (POD), and ascorbate peroxidase (APX) were also detected in all the three mangroves, while K. obovata showed the highest increases. These results indicate that chilling-tolerance of mangroves is associated with the efficiency of antioxidants, as confirmed by principal component analysis. The AsA, APX and POD in K. obovata may play more important role in control of oxidative stresses than those in the other two species. Furthermore, the higher cold-resistance of A. corniculatum compared to A. marina may be partly associated with its higher proline accumulation. The

  19. Ecophysiological differences between three mangrove seedlings (Kandelia obovata, Aegiceras corniculatum, and Avicennia marina) exposed to chilling stress.

    PubMed

    Peng, Ya-Lan; Wang, You-Shao; Fei, Jiao; Sun, Cui-Ci; Cheng, Hao

    2015-10-01

    Although the cold-resistant ability of mangroves varies greatly with species, the physiological mechanism remains unclear. The chilling stress effects on morphological changes, photosynthetic pigments, reactive oxygen species (ROS), malondialdehyde (MDA) and several antioxidants, were studied in leaves of three mangrove seedlings (Kandelia obovata, Aegiceras corniculatum and Avicennia marina). Results showed that both K. obovata and A. corniculatum exhibited lighter chilling damage, lower chilling injury rates and higher survival rates compared to A. marina. Reductions of chlorophylls (Chls) were observed in all the three mangroves, and the highest was detected in A. marina. Significant increases in content of ROS (hydrogen peroxide, H2O2; hydroxyl radicals, OH⋅) and MDA were observed in both A. marina and A. corniculatum, whereas chilling stressed K. obovata showed a decrease in H2O2 content, constant OH⋅ level and instantaneous increase of MDA. The contents of proline and water-soluble protein exhibited similar stress-time dependent increases in all mangroves, while A. corniculatum showed the highest increase of proline and relatively higher increase of water-soluble protein. The catalase activities significantly decreased with stress time in all mangroves, while K. obovata showed the least reduction. An increase in ascorbic acid (AsA) content and activities of superoxide dismutase, peroxidase (POD), and ascorbate peroxidase (APX) were also detected in all the three mangroves, while K. obovata showed the highest increases. These results indicate that chilling-tolerance of mangroves is associated with the efficiency of antioxidants, as confirmed by principal component analysis. The AsA, APX and POD in K. obovata may play more important role in control of oxidative stresses than those in the other two species. Furthermore, the higher cold-resistance of A. corniculatum compared to A. marina may be partly associated with its higher proline accumulation. The

  20. The MARINA model (Model to Assess River Inputs of Nutrients to seAs): Model description and results for China.

    PubMed

    Strokal, Maryna; Kroeze, Carolien; Wang, Mengru; Bai, Zhaohai; Ma, Lin

    2016-08-15

    Chinese agriculture has been developing fast towards industrial food production systems that discharge nutrient-rich wastewater into rivers. As a result, nutrient export by rivers has been increasing, resulting in coastal water pollution. We developed a Model to Assess River Inputs of Nutrients to seAs (MARINA) for China. The MARINA Nutrient Model quantifies river export of nutrients by source at the sub-basin scale as a function of human activities on land. MARINA is a downscaled version for China of the Global NEWS-2 (Nutrient Export from WaterSheds) model with an improved approach for nutrient losses from animal production and population. We use the model to quantify dissolved inorganic and organic nitrogen (N) and phosphorus (P) export by six large rivers draining into the Bohai Gulf (Yellow, Hai, Liao), Yellow Sea (Yangtze, Huai) and South China Sea (Pearl) in 1970, 2000 and 2050. We addressed uncertainties in the MARINA Nutrient model. Between 1970 and 2000 river export of dissolved N and P increased by a factor of 2-8 depending on sea and nutrient form. Thus, the risk for coastal eutrophication increased. Direct losses of manure to rivers contribute to 60-78% of nutrient inputs to the Bohai Gulf and 20-74% of nutrient inputs to the other seas in 2000. Sewage is an important source of dissolved inorganic P, and synthetic fertilizers of dissolved inorganic N. Over half of the nutrients exported by the Yangtze and Pearl rivers originated from human activities in downstream and middlestream sub-basins. The Yellow River exported up to 70% of dissolved inorganic N and P from downstream sub-basins and of dissolved organic N and P from middlestream sub-basins. Rivers draining into the Bohai Gulf are drier, and thus transport fewer nutrients. For the future we calculate further increases in river export of nutrients. The MARINA Nutrient model quantifies the main sources of coastal water pollution for sub-basins. This information can contribute to formulation of

  1. Effects of Bioadvection by Arenicola marina on Microphytobenthos in Permeable Sediments.

    PubMed

    Chennu, Arjun; Volkenborn, Nils; de Beer, Dirk; Wethey, David S; Woodin, Sarah A; Polerecky, Lubos

    2015-01-01

    We used hyperspectral imaging to study short-term effects of bioturbation by lugworms (Arenicola marina) on the surficial biomass of microphytobenthos (MPB) in permeable marine sediments. Within days to weeks after the addition of a lugworm to a homogenized and recomposed sediment, the average surficial MPB biomass and its spatial heterogeneity were, respectively, 150-250% and 280% higher than in sediments without lugworms. The surficial sediment area impacted by a single medium-sized lugworm (~4 g wet weight) over this time-scale was at least 340 cm2. While sediment reworking was the primary cause of the increased spatial heterogeneity, experiments with lugworm-mimics together with modeling showed that bioadvective porewater transport from depth to the sediment surface, as induced by the lugworm ventilating its burrow, was the main cause of the increased surficial MPB biomass. Although direct measurements of nutrient fluxes are lacking, our present data show that enhanced advective supply of nutrients from deeper sediment layers induced by faunal ventilation is an important mechanism that fuels high primary productivity at the surface of permeable sediments even though these systems are generally characterized by low standing stocks of nutrients and organic material. PMID:26230398

  2. Effects of Bioadvection by Arenicola marina on Microphytobenthos in Permeable Sediments

    PubMed Central

    Chennu, Arjun; Volkenborn, Nils; de Beer, Dirk; Wethey, David S.; Woodin, Sarah A.; Polerecky, Lubos

    2015-01-01

    We used hyperspectral imaging to study short-term effects of bioturbation by lugworms (Arenicola marina) on the surficial biomass of microphytobenthos (MPB) in permeable marine sediments. Within days to weeks after the addition of a lugworm to a homogenized and recomposed sediment, the average surficial MPB biomass and its spatial heterogeneity were, respectively, 150-250% and 280% higher than in sediments without lugworms. The surficial sediment area impacted by a single medium-sized lugworm (~4 g wet weight) over this time-scale was at least 340 cm2. While sediment reworking was the primary cause of the increased spatial heterogeneity, experiments with lugworm-mimics together with modeling showed that bioadvective porewater transport from depth to the sediment surface, as induced by the lugworm ventilating its burrow, was the main cause of the increased surficial MPB biomass. Although direct measurements of nutrient fluxes are lacking, our present data show that enhanced advective supply of nutrients from deeper sediment layers induced by faunal ventilation is an important mechanism that fuels high primary productivity at the surface of permeable sediments even though these systems are generally characterized by low standing stocks of nutrients and organic material. PMID:26230398

  3. Influence of the seagrass, Zostera marina L., on current flow*1

    NASA Astrophysics Data System (ADS)

    Fonseca, M. S.; Fisher, J. S.; Zieman, J. C.; Thayer, G. W.

    1982-10-01

    A salt-water flume was used to describe the mechanics of current flow around an articial Zostera marina meadow. Shear velocity and roughness height were positively correlated with seagrass surface area, and were positively/negatively correlated with current velocity. Current velocity intrusion into the meadow before diminution and maximum reduction (both at the 2 cm height line) proceed by factors of 1·25 and 2·07 cm into the meadow per cm s -1 of current velocity, respectively. Froude number was correlated with mean bending angle of the canopy as a whole. Maximum bending had occurred with Froude = 1, but most bending had taken place by Froude = 0·4, a velocity of 40-50 cm s -1 in this experiment. The meadow edge is the most dynamic zone of a seagrass meadow in regard to current flow. Bending of the shoot canopy is a mechanism for re-direction of current flow and in-canopy reduction of current velocity. Meadow dimensions may be regulated by scouring processes in different hydraulic regimes. Shoot bending and subsequent in-meadow current velocity reduction are mechanisms that affect self-shading and photosynthetic capabilities as well as providing habitat stability.

  4. Aerenchyma tissue development and gas-pathway structure in root of Avicennia marina (Forsk.) Vierh.

    PubMed

    Purnobasuki, Hery; Suzuki, Mitsuo

    2005-08-01

    The aerenchyma differentiation in cable roots, pneumatophores, anchor roots, and feeding roots of the mangrove plant, Avicennia marina (Verbenaceae) was analyzed using a light microscope and scanning electron microscope. In all types, cortex cells were arranged in longitudinal columns extending from the endodermis to the epidermis. No cells in the cortex had intercellular spaces at the root tip (0-150 microm), and aerenchyma started developing at 200 microm from the root apex. The aerenchyma formation was due to cell separation (schizogeny) rather than cell lysis. The cell separation occurred between the longitudinal cell columns, forming long intercellular spaces along the root axis. During aerenchyma formation, the cortex cells enlarged longitudinally by 1.8-3.9 times and widened horizontally by 2.2-2.9 times. As a result, the aerenchyma had a pronounced tubular structure that was radially long, elliptical or oval in cross section and that ran parallel to the root axis. The tube had tapering ends, as did vessel elements, although there were no perforated plates. The interconnection between neighboring tubes was made by abundant small pores or canals that were schizogenous intercellular spaces between the wall cells. All aerenchyma tubes in the root were interconnected by these small pores serving as a gas pathway.

  5. Larger body size at metamorphosis enhances survival, growth and performance of young cane toads (Rhinella marina).

    PubMed

    Cabrera-Guzmán, Elisa; Crossland, Michael R; Brown, Gregory P; Shine, Richard

    2013-01-01

    Body size at metamorphosis is a key trait in species (such as many anurans) with biphasic life-histories. Experimental studies have shown that metamorph size is highly plastic, depending upon larval density and environmental conditions (e.g. temperature, food supply, water quality, chemical cues from conspecifics, predators and competitors). To test the hypothesis that this developmental plasticity is adaptive, or to determine if inducing plasticity can be used to control an invasive species, we need to know whether or not a metamorphosing anuran's body size influences its subsequent viability. For logistical reasons, there are few data on this topic under field conditions. We studied cane toads (Rhinella marina) within their invasive Australian range. Metamorph body size is highly plastic in this species, and our laboratory studies showed that larger metamorphs had better locomotor performance (both on land and in the water), and were more adept at catching and consuming prey. In mark-recapture trials in outdoor enclosures, larger body size enhanced metamorph survival and growth rate under some seasonal conditions. Larger metamorphs maintained their size advantage over smaller siblings for at least a month. Our data support the critical but rarely-tested assumption that all else being equal, larger body size at metamorphosis is likely to enhance an individual's long term viability. Thus, manipulations to reduce body size at metamorphosis in cane toads may help to reduce the ecological impact of this invasive species.

  6. Restoring eelgrass (Zostera marina L.) habitats using a simple and effective transplanting technique.

    PubMed

    Zhou, Yi; Liu, Peng; Liu, Bingjian; Liu, Xujia; Zhang, Xiaomei; Wang, Feng; Yang, Hongsheng

    2014-01-01

    Eelgrass beds in coastal waters of China have declined substantially over the past 30 years. In this study, a simple new transplanting technique was developed for eelgrass (Zostera marina L.) restoration. To assist in anchoring single shoots, several rhizomes of rooted shoots were bound to a small elongate stone (50-150 g) with biodegradable thread (cotton or hemp), and then the bound packet was buried at an angle in the sediments at a depth of 2-4 cm. This stone anchoring method was used to transplant eelgrass in early November 2009 and late May 2010 in Huiquan Bay, Qingdao. The method led to high success. Three month survivorship of the transplanted shoots at the two transplant sites was >95%. From April 20 to November 19, 2012, the following characteristics of the 2009 and 2010 transplanted eelgrass beds were monitored: morphological changes, shoot density, shoot height, leaf biomass, and sediment particle size. Results showed that the sexual reproduction period of the planted eelgrass was from April to August, and vegetative reproduction reached its peak in autumn. Maximum shoot height and biomass were observed in June and July. After becoming established, the transplanted eelgrass beds were statistically equal to natural eelgrass beds nearby in terms of shoot height, biomass, and seasonal variations. This indicates that the transplant technique is effective for eelgrass restoration in coastal waters. PMID:24695414

  7. Restoring Resiliency: Case Studies from Pacific Northwest Estuarine Eelgrass (Zostera marina L.) Ecosystems

    SciTech Connect

    Thom, Ronald M.; Diefenderfer, Heida L.; Vavrinec, John; Borde, Amy B.

    2012-01-01

    The purpose of many ecological restoration projects is to establish an ecosystem with fully developed structure and function that exhibits resistance to and resilience from disturbances. Coastal restoration projects in the Pacific Northwest provide opportunities to understand what is required to restore the resilience of eelgrass (Zostera marina L.) populations. Factors influencing resilience observed in three case studies of eelgrass restoration include minimum viable population, adaptations of transplant populations, and natural and anthropogenic disturbances at restoration sites. The evaluation of resiliency depends on selecting appropriate monitoring metrics and the frequency and duration of monitoring. Eelgrass area, cover and shoot density provide useful and reliable metrics for quantifying resilience of restored meadows. Further, five years of monitoring of these metrics provides data that can reasonably predict the long-term viability of a planted plot. Eelgrass appears to be a resilient ecosystem in general, though one that data suggest may exhibit tipping points brought about by compounded environmental conditions outside of its tolerance ranges. Explicit inclusion of resilience in the planning and practice of habitat restoration may reduce uncertainties and improve the performance of restored systems by increasing buffering capacity, nurturing sources of renewal (e.g., seeds and rhizomes), and managing for habitat forming and maintaining processes (e.g., sediment dynamics) at multiple scales.

  8. An ultrastructural study of spermatogenesis and sperm morula breakdown in Arenicola marina (L.) (Annelida: Polychaeta)

    NASA Astrophysics Data System (ADS)

    Pacey, A. A.; Bentley, M. G.

    1992-06-01

    Spermatogenesis in the lugworm Arenicola marina, in common with other members of Arenicolidae, occurs in the coelomic fluid and results in the formation of discs of mature spermatozoa known as a morulae. Within a morula, individual spermatozoa are connected by a common mass of cytoplasm called the cytophore and therefore make up a syncitium. Immediately prior to spawning, and in response to an endocrine substance known as “Sperm Maturation Factor” (SMF), the structure of the sperm morulae breaks down and free spermatozoa are liberated. These are subsequently spawned from the body cavity. The investigation described here uses transmission electron microscopy to investigate the ultrastructural changes, which accompany spermatogenesis and the breakdown of sperm morulae in response to SMF in vitro. The study demonstrates that the cytophore appears to have a key role both during spermatogenesis and during sperm morula breakdown. The ultrastructure of sperm morulae and of mature spermatozoa is described. The structure of spermatozoa is shown to be primitive with a single flagellum which appears to be coiled at its distal end. The phagocytosis of free spermatozoa by coelomocytes is also described and it is suggested that these may play a role in the resorption of unspawned gametes in vivo.

  9. Granulosicoccus coccoides sp. nov., isolated from leaves of seagrass (Zostera marina).

    PubMed

    Kurilenko, Valerie V; Christen, Richard; Zhukova, Natalia V; Kalinovskaya, Nataliya I; Mikhailov, Valery V; Crawford, Russell J; Ivanova, Elena P

    2010-04-01

    A non-pigmented, motile, Gram-negative bacterium, strain Z 271(T), was isolated from the surface of leaves of the seagrass Zostera marina which was collected in Troitza Bay (Sea of Japan, Pacific Ocean). The new isolate grew between 5 degrees C and 28 degrees C and was slightly halophilic, tolerating environments containing up to 5 % (w/v) NaCl. Strain Z 271(T) was able to degrade Tweens 20, 40 and 80 and partially degrade gelatin, but was unable to degrade casein. Phosphatidylethanolamine (36.9 %) and phosphatidylglycerol (63.1 %) were the predominant phospholipids. The major fatty acids included C(18 : 1)omega7c (43.7 %), C(16 : 1)omega7c (31.1 %) and C(16 : 0) (16.8 %). The main respiratory quinone was Q-8. The DNA-DNA relatedness value of strain Z 271(T) with Granulosicoccus antarcticus IMCC3135(T) was 35 %. The G+C content of the DNA of strain Z 271(T) was 60.2 mol%. On the basis of phenotypic and genotypic characteristics and 16S rRNA gene sequence analysis, strain Z 271(T) represents a novel species of the genus Granulosicoccus for which the name Granulosicoccus coccoides sp. nov. is proposed. The type strain is Z 271(T) (=KMM 6014(T)=CIP 109923(T)).

  10. Temporal and spatial dynamics of ephemeral drift-algae in eelgrass, Zostera marina, beds

    NASA Astrophysics Data System (ADS)

    Rasmussen, Jonas Ribergaard; Pedersen, Morten Foldager; Olesen, Birgit; Nielsen, Søren Laurentius; Pedersen, Troels Møller

    2013-03-01

    Aggregations of unattached, filamentous macroalgae showed high temporal and spatial dynamics in two shallow and relatively sheltered eelgrass (Zostera marina) beds in Aarhus Bay and the Isefjord, Denmark. The changes in algal abundance were followed in permanent plots at 1-3 days intervals during three different periods of the growth season (May-September). Drift-algal assemblages were present within the 3000 m2 study areas in relatively high and constant abundance (>47% cover) throughout the study period. However, significant changes in average site cover did occur on short timescales (days) suggesting that variability in algal cover may be undetected in monthly assessments. The changes in cover were caused either by algal growth or by physical forces moving large aggregations of algae into or out of the study area. Within plots (1 m2) variability was even higher and algal cover changed regularly between observations (days). Hence, the algae were continuously rearranged within the eelgrass beds; also during periods with no change in average algal cover. The variability in cover of individual plots was negatively correlated to eelgrass cover, suggesting that algae were retained by the eelgrass leaves. This highly dynamic nature of filamentous macroalgal aggregations in eelgrass beds should be considered when evaluating implications of macroalgal blooms for seagrass growth and survival. A frequent relocation of drift-algae at small spatial scale may moderate the formation of poor oxygen conditions within mats and shorten the duration of exposure experienced by individual shoots.

  11. Expression pattern of arenicins—the antimicrobial peptides of polychaete Arenicola marina

    PubMed Central

    Maltseva, Arina L.; Kotenko, Olga N.; Kokryakov, Vladimir N.; Starunov, Viktor V.; Krasnodembskaya, Anna D.

    2014-01-01

    Immune responses of invertebrate animals are mediated through innate mechanisms, among which production of antimicrobial peptides play an important role. Although evolutionary Polychaetes represent an interesting group closely related to a putative common ancestor of other coelomates, their immune mechanisms still remain scarcely investigated. Previously our group has identified arenicins—new antimicrobial peptides of the lugworm Arenicola marina, since then these peptides were thoroughly characterized in terms of their structure and inhibitory potential. In the present study we addressed the question of the physiological functions of arenicins in the lugworm body. Using molecular and immunocytochemical methods we demonstrated that arencins are expressed in the wide range of the lugworm tissues—coelomocytes, body wall, extravasal tissue and the gut. The expression of arenicins is constitutive and does not depend on stimulation of various infectious stimuli. Most intensively arenicins are produced by mature coelomocytes where they function as killing agents inside the phagolysosome. In the gut and the body wall epithelia arenicins are released from producing cells via secretion as they are found both inside the epithelial cells and in the contents of the cuticle. Collectively our study showed that arenicins are found in different body compartments responsible for providing a first line of defense against infections, which implies their important role as key components of both epithelial and systemic branches of host defense. PMID:25566093

  12. Larger Body Size at Metamorphosis Enhances Survival, Growth and Performance of Young Cane Toads (Rhinella marina)

    PubMed Central

    Cabrera-Guzmán, Elisa; Crossland, Michael R.; Brown, Gregory P.; Shine, Richard

    2013-01-01

    Body size at metamorphosis is a key trait in species (such as many anurans) with biphasic life-histories. Experimental studies have shown that metamorph size is highly plastic, depending upon larval density and environmental conditions (e.g. temperature, food supply, water quality, chemical cues from conspecifics, predators and competitors). To test the hypothesis that this developmental plasticity is adaptive, or to determine if inducing plasticity can be used to control an invasive species, we need to know whether or not a metamorphosing anuran’s body size influences its subsequent viability. For logistical reasons, there are few data on this topic under field conditions. We studied cane toads (Rhinella marina) within their invasive Australian range. Metamorph body size is highly plastic in this species, and our laboratory studies showed that larger metamorphs had better locomotor performance (both on land and in the water), and were more adept at catching and consuming prey. In mark-recapture trials in outdoor enclosures, larger body size enhanced metamorph survival and growth rate under some seasonal conditions. Larger metamorphs maintained their size advantage over smaller siblings for at least a month. Our data support the critical but rarely-tested assumption that all else being equal, larger body size at metamorphosis is likely to enhance an individual’s long term viability. Thus, manipulations to reduce body size at metamorphosis in cane toads may help to reduce the ecological impact of this invasive species. PMID:23922930

  13. A new species of nematode (Molineidae) from Rhinella marina (Amphibia: Bufonidae) in Guerrero, México.

    PubMed

    Ruiz-Torres, Nallely; García-Prieto, Luis; Osorio-Sarabia, David; Violante-González, Juan

    2013-06-01

    Oswaldocruzia lamotheargumedoi n. sp., inhabiting the intestine of the cane toad, Rhinella marina (L.), in Laguna de Coyuca, Guerrero, México, is described here. The new species differs from 10 congeners infecting bufonid hosts because it has a type I bursa. In contrast, 7 of these species have type II bursa and 3 more a type III bursa. The species most similar to the species described herein is Oswaldocruzia pipiens Walton, 1929 . These 2 species share traits such as body size, bursa type, presence of cervical alae, and dorsal ray morphology. Nevertheless, both species can be distinguished based on the number of synlophe ridges at mid-body (54-56 for O. lamotheargumedoi vs. 45-48 for O. pipiens) and by the presence of a chitinous support in the long, and well developed, cervical alae of O. pipiens. In the new species, these structures are short, poorly developed, and lack chitinous support. Previous records of species of Oswaldocruzia in México include Oswaldocruzia subauricularis (Rudolphi, 1819) Travassos, 1917 in the Neotropical Realm and O. pipiens in the Nearctic.

  14. Estimating aboveground biomass in Avicennia marina plantation in Indian Sundarbans using high-resolution satellite data

    NASA Astrophysics Data System (ADS)

    Manna, Sudip; Nandy, Subrata; Chanda, Abhra; Akhand, Anirban; Hazra, Sugata; Dadhwal, Vinay Kumar

    2014-01-01

    Mangroves are active carbon sequesters playing a crucial role in coastal ecosystems. In the present study, aboveground biomass (AGB) was estimated in a 5-year-old Avicennia marina plantation (approximate area ≈190 ha) of Indian Sundarbans using high-resolution satellite data in order to assess its carbon sequestration potential. The reflectance values of each band of LISS IV satellite data and the vegetation indices, viz., normalized difference vegetation index (NDVI), optimized soil adjusted vegetation index (OSAVI), and transformed difference vegetation index (TDVI), derived from the satellite data, were correlated with the AGB. OSAVI showed the strongest positive linear relationship with the AGB and hence carbon content of the stand. OSAVI was found to predict the AGB to a great extent (r=0.72) as it is known to nullify the background soil reflectance effect added to vegetation reflectance. The total AGB of the entire plantation was estimated to be 236 metric tons having a carbon stock of 54.9 metric tons, sequestered within a time span of 5 years. Integration of this technique for monitoring and management of young mangrove plantations will give time and cost effective results.

  15. Ortleppascaris sp. and your host Rhinella marina: A proteomic view into a nematode–amphibian relationship

    PubMed Central

    Silva, Jefferson Pereira e; Furtado, Adriano Penha; Santos, Jeannie Nascimento dos

    2014-01-01

    The success of the helminth–host relationship depends on a biochemical molecular arsenal. Perhaps the proteome is the largest and most important set of this weaponry, in which the proteins have a crucial role in vital processes to the parasite/host relationship, from basic metabolism and energy production to complex immune responses. Nowadays, the bioproducts expressed by the parasites are under the “spotlight” of immunoassays and biochemical analysis in helminthology, especially in proteomic analysis, which has provided valuable information about the physiology of the infecting agent. Looking into this point of view, why not turn to the infected agent as well? This study characterised the proteomic profile of fluid-filled fibrous cysts of encapsulated Ortleppascaris sp. larvae in the hepatic parenchyma of their intermediate host, the amphibian Rhinella marina. The proteins were separated by two-dimensional electrophoresis and identified by MS with the aid of Peptide Mass Fingerprint. A total of 54 molecules were analysed in this system, revealing a complex protein profile with molecules related to basic metabolic processes of the parasite, energy production, oxi-reduction and oxidative stress processes as well as molecules related to the host response. This study contributes to proteomic studies of protein markers of the development, infectivity, virulence and co-existence of helminths and their hosts. PMID:25161910

  16. Assessing establishment success of Zostera marina transplants through measurements of shoot morphology and growth

    NASA Astrophysics Data System (ADS)

    Li, Wen-Tao; Kim, Jong-Hyeob; Park, Jung-Im; Lee, Kun-Seop

    2010-07-01

    Since significant seagrass declines have been reported worldwide, numerous seagrass restoration projects through transplantation have been attempted in recent decades. In this study, Zostera marina shoots were transplanted into Jindong Bay on the southern coast of Korea in November 2006 to assess establishment success of the transplants to a new transplant environment. Shoot density, individual shoot weight, productivity, and morphological characteristics of transplants and reference plants in the vicinity of the planting site were monitored monthly for 13 months. Although shoot size of transplants was smaller than that of reference plants at the start of transplantation, individual shoot weight, leaf width, shoot height, and rhizome diameter of transplants increased rapidly, reaching even higher values than those of reference plants 5 months after transplantation. These results suggest that eelgrass transplants established morphologically 5 months after transplantation. Shoot productivity of transplants was lower than that of reference population during the first 5-6 months following transplantation, but became higher than that of reference population 6 months after transplantation. The higher transplant productivity was likely due to the lower shoot density at the transplant site than that at the reference population. Rapid changes in shoot morphology and growth of transplants indicated that eelgrass transplants had great morphological plasticity and established successfully in the new environment within 5-6 months. In addition to survival rates of transplants, monitoring of shoot morphology and growth appeared to be an effective approach for accurate assessment of the establishment success of eelgrass transplant.

  17. Influence of temperature and salinity on germination of eelgrass ( Zostera marina L.) seeds

    NASA Astrophysics Data System (ADS)

    Pan, Jinhua; Jiang, Xin; Li, Xiaojie; Cong, Yizhou; Zhang, Zhuangzhi; Li, Zhiling; Zhou, Weili; Han, Houwei; Luo, Shiju; Yang, Guanpin

    2011-06-01

    Seagrass restoration as part of ocean ecosystem protection has been launched for many years all over the world, but intensive research on this subject in China has just begun in recent years. Seed broadcasting has been widely accepted as the most potentially useful method for seagrass restoration over large areas. We examined the influence of key environmental factors on seed germination to help promote eelgrass bed restoration. Under anoxic conditions, the influence of temperature and salinity on the germination rate of eelgrass ( Zostera marina L.) seeds was examined at different combinations of four temperatures (4, 9, 14, and 24°C) and nine salinities (5 to 45, increment of 5). The effect of significant interaction of temperature and salinity on germination rate was observed (ANOVA) ( P<0.001). The highest germination rate (83.3 ± 3.5)% was reached in 8 weeks at 14°C and salinity 5. Higher temperature significantly increased the germination rate at salinity 5 ( P<0.001) during the whole observation period except for 24°C, while lower salinity significantly increased the germination rate at 14°C ( P<0.001). Although significant interaction was found between temperature and salinity ( P<0.001), the influence of salinity was stronger than that of temperature for the germination of eelgrass seeds. These results provide useful information for the propagation of artificial seedlings for seagrass restoration in China.

  18. Seed production from the mixed mating system of Chesapeake Bay (USA) eelgrass (Zostera marina; Zosteraceae).

    PubMed

    Rhode, Jennifer M; Emmett Duffy, J

    2004-02-01

    In monoecious plants, gametes can be exchanged in three ways: among unrelated genets (outbreeding), with close relatives (inbreeding), or within individuals (geitonogamous selfing). These different mating systems may have consequences for population demography and fitness. The experiment presented herein used artificial crosses to examine the mating system of Chesapeake Bay, Virginia, USA eelgrass (Zostera marina L; Zosteraceae), a bisexual submerged aquatic plant that can outbreed, inbreed, and self. Genetic data indicate severe heterozygosity deficiencies and patchy genotype distribution in these beds, suggesting that plants therein reproduce primarily by vegetative propagation, autogamy, or geitonogamy. To clarify eelgrass reproductive strategies, flowers from three genetically and geographically distinct beds were hand-pollinated in outbred, inbred, and selfed matings. Fertilization success and seed production, life history stages which contribute greatly to the numeric maintenance of populations, were monitored. We found no evidence that inbreeding had negative consequences for seed production. On the contrary, selfed matings produced seeds significantly more frequently than outcrossed matings and produced significantly larger numbers of seeds than either inbred or outbred matings. These results contrast with patterns for eelgrass in other regions but might be expected for similar populations in which pollen limitation or a short reproductive season renders selfing advantageous.

  19. The impact of the herbicide atrazine on growth and photosynthesis of seagrass, Zostera marina (L.), seedlings.

    PubMed

    Gao, Yaping; Fang, Jianguang; Zhang, Jihong; Ren, Lihua; Mao, Yuze; Li, Bin; Zhang, Mingliang; Liu, Dinghai; Du, Meirong

    2011-08-01

    The impact of the widely used herbicide atrazine on seedling growth and photosynthesis of eelgrass was determined. The long-term impact of the herbicide atrazine (1, 10 and 100 μg/L) on growth of eelgrass Zostera marina (L.) seedlings, maintained in outdoor aquaria, was monitored over 4 weeks. Exposure to 10 μg/L atrazine resulted in significantly lower plant fresh weight and total chlorophyll concentration and up to 86.67% mortality at the 100 μg/L concentration. Short-term photosynthetic stress on eelgrass seedlings was determined and compared with adult eelgrass using chlorophyll fluorescence. The effective quantum yield in eelgrass seedlings was significantly depressed at all atrazine concentrations (2, 4, 8, 16, 32 and 64 μg/L) even within 2 h and remained at a lower level than for adult plants for each concentration. These results indicate that atrazine presents a potential threat to seagrass seedling functioning and that the impact is much higher than for adult plants.

  20. Policy plans and management measures to restore eelgrass (Zostera marina L.) in the Dutch Wadden Sea

    NASA Astrophysics Data System (ADS)

    de Jonge, V. N.; de Jong, D. J.; van Katwijk, M. M.

    2000-07-01

    The Dutch Wadden Sea has been changed dramatically over the last centuries by human activities like land reclamation and different forms of fishery. This has, amongst other things, led to changes in the number of biological communities. One of the changes was the near extinction of eelgrass (Zostera marina L.) in the Dutch Wadden Sea. The deterioration of the area led to policy plans in the late 1980s that aimed at restoring the original natural communities of which the eelgrass community was one. This paper presents a restoration strategy which contains a selection procedure for suitable transplantation sites. The selection procedure is based on factors such as sediment composition, exposure time, current velocity and wave action. These were combined in a GIS-based map integrating these factors. One important action in the restoration process is to increase the number of freshwater discharge points to meet the requirements of the brackish water community in general and the growing conditions for eelgrass in particular.

  1. Conversion of Eelgrass into effective building insulation. [Eelgrass-Zostera marina

    SciTech Connect

    Rue, M.L.

    1984-03-23

    To test the suitability of accelerated solar drying of Zostera marina (Eelgrass), a solar heated drying chamber was constructed. Initially, a small pilot unit was assembled to verify the concept. Temperatures well over 200/sup 0/F were achieved with this unit, so a larger version of approximately 50 square feet of solar surface was constructed. The principal used in the construction was as noted on the following description, however, a stationary unit, not floating, was used for the drying tests. It was found that eelgrass could be dried to a form suitable for use in approximately 4 to 6 hours. During that time, the water content of the leaves was reduced from 4 to 5 times their dry weight to equilibrium moisture level. This compares wtih a reported 3 to 4 weeks drying time required of open air sun drying used in the early part of this century. See following chart for a typical drying run. The major problem encountered during the drying cycle was that the eelgrass on the top surface, as it dried, formed an insulating blanket over the grass below. It became necessary to periodically turn over the material for more uniform drying. A slowly rotating drying chamber would resolve this problem on future designs. The paper contains further information on various seagrasses.

  2. Conservation of eelgrass (Zostera marina) genetic diversity in a mesocosm-based restoration experiment.

    PubMed

    Ort, Brian S; Cohen, C Sarah; Boyer, Katharyn E; Reynolds, Laura K; Tam, Sheh May; Wyllie-Echeverria, Sandy

    2014-01-01

    Eelgrass (Zostera marina) forms the foundation of an important shallow coastal community in protected estuaries and bays. Widespread population declines have stimulated restoration efforts, but these have often overlooked the importance of maintaining the evolutionary potential of restored populations by minimizing the reduction in genetic diversity that typically accompanies restoration. In an experiment simulating a small-scale restoration, we tested the effectiveness of a buoy-deployed seeding technique to maintain genetic diversity comparable to the seed source populations. Seeds from three extant source populations in San Francisco Bay were introduced into eighteen flow-through baywater mesocosms. Following seedling establishment, we used seven polymorphic microsatellite loci to compare genetic diversity indices from 128 shoots to those found in the source populations. Importantly, allelic richness and expected heterozygosity were not significantly reduced in the mesocosms, which also preserved the strong population differentiation present among source populations. However, the inbreeding coefficient F IS was elevated in two of the three sets of mesocosms when they were grouped according to their source population. This is probably a Wahlund effect from confining all half-siblings within each spathe to a single mesocosm, elevating F IS when the mesocosms were considered together. The conservation of most alleles and preservation of expected heterozygosity suggests that this seeding technique is an improvement over whole-shoot transplantation in the conservation of genetic diversity in eelgrass restoration efforts.

  3. Restoring eelgrass (Zostera marina L.) habitats using a simple and effective transplanting technique.

    PubMed

    Zhou, Yi; Liu, Peng; Liu, Bingjian; Liu, Xujia; Zhang, Xiaomei; Wang, Feng; Yang, Hongsheng

    2014-01-01

    Eelgrass beds in coastal waters of China have declined substantially over the past 30 years. In this study, a simple new transplanting technique was developed for eelgrass (Zostera marina L.) restoration. To assist in anchoring single shoots, several rhizomes of rooted shoots were bound to a small elongate stone (50-150 g) with biodegradable thread (cotton or hemp), and then the bound packet was buried at an angle in the sediments at a depth of 2-4 cm. This stone anchoring method was used to transplant eelgrass in early November 2009 and late May 2010 in Huiquan Bay, Qingdao. The method led to high success. Three month survivorship of the transplanted shoots at the two transplant sites was >95%. From April 20 to November 19, 2012, the following characteristics of the 2009 and 2010 transplanted eelgrass beds were monitored: morphological changes, shoot density, shoot height, leaf biomass, and sediment particle size. Results showed that the sexual reproduction period of the planted eelgrass was from April to August, and vegetative reproduction reached its peak in autumn. Maximum shoot height and biomass were observed in June and July. After becoming established, the transplanted eelgrass beds were statistically equal to natural eelgrass beds nearby in terms of shoot height, biomass, and seasonal variations. This indicates that the transplant technique is effective for eelgrass restoration in coastal waters.

  4. [Absorption and distribution of K, Na and Mg in Avicennia marina seedlings under cadmium stress].

    PubMed

    Lu, Zhi-qiang; Chen, Chang-xu; Ma, Li; Zheng, Wen-jiao

    2015-05-01

    In this paper, mangrove seedlings Avicennia marina were treated with various contents of cadmium (0, 0.5, 5, 25, 50, 100, 150 mg · L(-1)). These seedlings were cultivated by man-made seawater with a salinity of 15 in sand for 90 days in a greenhouse. The absorption and distribution of elements contents (K, Na and Mg) under cadmium stress were investigated at 45th and 90th day, respectively. The results showed that the enrichment of cadmium in the different components of seedlings increased with the increasing cadmium stress level and exposure time. The cadmium contents in roots and cotyledons were relatively higher than in the other components, accounting for 66.9% and 16.3% of cadmium in the seedlings under the 150 mg · L(-1) cadmium stress, respectively. The fall of cotyledons could reduce the damage of cadmium stress to the whole seedlings. The Na contents increased in roots and stems and decreased in leaves and cotyledons after cadmium stress for 90 days. The K content decreased in roots and cotyledons, while had no significant change in stems and leaves. The Mg content in roots, stems, leaves and cotyledons of seedlings treated with cadmium for 90 days were lower than those of the control, and were negatively related to the cadmium content. PMID:26571646

  5. Amycolatopsis marina sp. nov., an actinomycete isolated from an ocean sediment.

    PubMed

    Bian, Jiang; Li, Yan; Wang, Jian; Song, Fu-Hang; Liu, Mei; Dai, Huan-Qin; Ren, Biao; Gao, Hong; Hu, Xinling; Liu, Zhi-Heng; Li, Wen-Jun; Zhang, Li-Xin

    2009-03-01

    A Gram-positive, aerobic, non-motile actinobacterium, designated strain Ms392A(T), was isolated from an ocean-sediment sample collected from the South China Sea. The isolate contained chemical markers that supported chemotaxonomic assignment to the genus Amycolatopsis. On the basis of an analysis of 16S rRNA gene sequence similarities, strain Ms392A(T) represents a novel subclade within the genus Amycolatopsis, with Amycolatopsis palatopharyngis 1BDZ(T) as its closest phylogenetic neighbour (99.4 % similarity). However, DNA-DNA hybridization demonstrated that strain Ms392A(T) was distinct from A. palatopharyngis AS 4.1729(T) (48.6 % relatedness). The polyphasic analysis demonstrated that the ocean isolate can be clearly distinguished from recognized species of the genus Amycolatopsis. Therefore, strain Ms392A(T) represents a novel species of the genus Amycolatopsis, for which the name Amycolatopsis marina sp. nov. is proposed. The type strain is Ms392A(T) (=CGMCC 4.3568(T) =NBRC 104263(T)).

  6. The ichthyotoxic alga Chattonella marina induces Na{sup +}, K{sup +}-ATPase, and CFTR proteins expression in fish gill chloride cells in vivo

    SciTech Connect

    Tang, Janet Y.M.; Wong, Chris K.C.; Au, Doris W.T. . E-mail: bhdwtau@cityu.edu.hk

    2007-02-02

    Our previous studies demonstrated that the ichthyotoxic Chattonella marina stimulated proliferation of branchial chloride cell (CC) and induced osmotic distress akin to hyperactive elimination of ions in fish (Rhabdosargus sarba). To ascertain the in vivo effects of C. marina on key CC ion transporters, the localization and expression of Na{sup +}, K{sup +}-ATPase (NKA) and cystic fibrosis transmembrane conductance regulator (CFTR) proteins in response to C. marina exposure were investigated, using a quantitative immunocytochemical approach. The polarized distributions of NKA ({alpha} subunit) and CFTR proteins in branchial CCs of R. sarba remained unchanged under C. marina exposure. However, significant inductions of these two ion-transporters were detected in CCs of fish after 6 h exposure. By real-time PCR, no significant changes in gill NKA and CFTR mRNA expressions were detected, suggesting a post-transcriptional pathway is likely involved in regulating the ion transporters abundance. This study is the first to demonstrate the in vivo effects of harmful algal toxin on NKA and CFTR protein expressions in gill transepithelial cells. Taken together, an augmentation of branchial CCs together with hyper-stimulation of NKA and CFTR in CCs attribute to the rapid development of osmotic distress in C. marina susceptible fish.

  7. Analysis of EST data of the marine protist Oxyrrhis marina, an emerging model for alveolate biology and evolution

    PubMed Central

    2014-01-01

    Background The alveolates include a large number of important lineages of protists and algae, among which are three major eukaryotic groups: ciliates, apicomplexans and dinoflagellates. Collectively alveolates are present in virtually every environment and include a vast diversity of cell shapes, molecular and cellular features and feeding modes including lifestyles such as phototrophy, phagotrophy/predation and intracellular parasitism, in addition to a variety of symbiotic associations. Oxyrrhis marina is a well-known model for heterotrophic protist biology, and is now emerging as a useful organism to explore the many changes that occurred during the origin and diversification of dinoflagellates by virtue of its phylogenetic position at the base of the dinoflagellate tree. Results We have generated and analysed expressed sequence tag (EST) sequences from the alveolate Oxyrrhis marina in order to shed light on the evolution of a number of dinoflagellate characteristics, especially regarding the emergence of highly unusual genomic features. We found that O. marina harbours extensive gene redundancy, indicating high rates of gene duplication and transcription from multiple genomic loci. In addition, we observed a correlation between expression level and copy number in several genes, suggesting that copy number may contribute to determining transcript levels for some genes. Finally, we analyze the genes and predicted products of the recently discovered Dinoflagellate Viral Nuclear Protein, and several cases of horizontally acquired genes. Conclusion The dataset presented here has proven very valuable for studying this important group of protists. Our analysis indicates that gene redundancy is a pervasive feature of dinoflagellate genomes, thus the mechanisms involved in its generation must have arisen early in the evolution of the group. PMID:24512041

  8. High Genetic Diversity and Fine-Scale Spatial Structure in the Marine Flagellate Oxyrrhis marina (Dinophyceae) Uncovered by Microsatellite Loci

    PubMed Central

    Lowe, Chris D.; Montagnes, David J. S.; Martin, Laura E.; Watts, Phillip C.

    2010-01-01

    Free-living marine protists are often assumed to be broadly distributed and genetically homogeneous on large spatial scales. However, an increasing application of highly polymorphic genetic markers (e.g., microsatellites) has provided evidence for high genetic diversity and population structuring on small spatial scales in many free-living protists. Here we characterise a panel of new microsatellite markers for the common marine flagellate Oxyrrhis marina. Nine microsatellite loci were used to assess genotypic diversity at two spatial scales by genotyping 200 isolates of O. marina from 6 broad geographic regions around Great Britain and Ireland; in one region, a single 2 km shore line was sampled intensively to assess fine-scale genetic diversity. Microsatellite loci resolved between 1–6 and 7–23 distinct alleles per region in the least and most variable loci respectively, with corresponding variation in expected heterozygosities (He) of 0.00–0.30 and 0.81–0.93. Across the dataset, genotypic diversity was high with 183 genotypes detected from 200 isolates. Bayesian analysis of population structure supported two model populations. One population was distributed across all sampled regions; the other was confined to the intensively sampled shore, and thus two distinct populations co-occurred at this site. Whilst model-based analysis inferred a single UK-wide population, pairwise regional FST values indicated weak to moderate population sub-division (0.01–0.12), but no clear correlation between spatial and genetic distance was evident. Data presented in this study highlight extensive genetic diversity for O. marina; however, it remains a substantial challenge to uncover the mechanisms that drive genetic diversity in free-living microorganisms. PMID:21203414

  9. Long-Term Field Study Reveals Subtle Effects of the Invasive Alga Sargassum muticum upon the Epibiota of Zostera marina.

    PubMed

    DeAmicis, Stacey; Foggo, Andrew

    2015-01-01

    Invasive species can alter coastal ecosystems both directly, e.g. through competition for substratum and nutrients, and indirectly. Indirect effects may be mediated by creation of dissimilar or inimical habitats, changes in predator and/or prey assemblages, alterations in associated biota, and perturbations of water movement and thermal regimes. Previous studies have shown that invasive algae can modify native habitat architecture, disrupt intricately linked food webs and alter epibiotic assemblages. In the UK, the seagrass Zostera marina supports a diverse epibiotic assemblage, influencing key factors such as sediment dynamics, depositional regime and trophic linkages. Increasing encroachment of the invasive alga Sargassum muticum into seagrass meadows changes the physical and chemical characteristics of the local environment and creates the potential for changes in the epibionts associated with the seagrass blades, threatening the integrity of the seagrass ecosystem. We investigated the effects of S. muticum invasion upon the epibiota of Z. marina in a drowned river valley in SW England seasonally from spring to autumn over four years in an in-situ manipulative experiment, comparing permanent quadrats with and without artificially introduced S. muticum. Epibiota were weighed, identified to the most detailed operational taxonomic unit (OTU) possible, and unitary organisms were enumerated. Multivariate PERMANOVA+ analysis revealed significant differences in epibiont assemblages between Sargassum treatments. Linear mixed effects models indicated that differences in epibiota assemblage composition were not reflected as significant differences in mean biomass per sample, or number of epibiont OTUs per sample. We conclude that S. muticum invasion into Z. marina meadows may significantly alter the species composition and abundance distribution of epibiotic assemblages found on the blades of the seagrass. Thus S. muticum invasion could have more wide-reaching effects on

  10. High genetic diversity and fine-scale spatial structure in the marine flagellate Oxyrrhis marina (Dinophyceae) uncovered by microsatellite loci.

    PubMed

    Lowe, Chris D; Montagnes, David J S; Martin, Laura E; Watts, Phillip C

    2010-01-01

    Free-living marine protists are often assumed to be broadly distributed and genetically homogeneous on large spatial scales. However, an increasing application of highly polymorphic genetic markers (e.g., microsatellites) has provided evidence for high genetic diversity and population structuring on small spatial scales in many free-living protists. Here we characterise a panel of new microsatellite markers for the common marine flagellate Oxyrrhis marina. Nine microsatellite loci were used to assess genotypic diversity at two spatial scales by genotyping 200 isolates of O. marina from 6 broad geographic regions around Great Britain and Ireland; in one region, a single 2 km shore line was sampled intensively to assess fine-scale genetic diversity. Microsatellite loci resolved between 1-6 and 7-23 distinct alleles per region in the least and most variable loci respectively, with corresponding variation in expected heterozygosities (H(e)) of 0.00-0.30 and 0.81-0.93. Across the dataset, genotypic diversity was high with 183 genotypes detected from 200 isolates. Bayesian analysis of population structure supported two model populations. One population was distributed across all sampled regions; the other was confined to the intensively sampled shore, and thus two distinct populations co-occurred at this site. Whilst model-based analysis inferred a single UK-wide population, pairwise regional F(ST) values indicated weak to moderate population sub-division (0.01-0.12), but no clear correlation between spatial and genetic distance was evident. Data presented in this study highlight extensive genetic diversity for O. marina; however, it remains a substantial challenge to uncover the mechanisms that drive genetic diversity in free-living microorganisms.

  11. Long-Term Field Study Reveals Subtle Effects of the Invasive Alga Sargassum muticum upon the Epibiota of Zostera marina

    PubMed Central

    2015-01-01

    Invasive species can alter coastal ecosystems both directly, e.g. through competition for substratum and nutrients, and indirectly. Indirect effects may be mediated by creation of dissimilar or inimical habitats, changes in predator and/or prey assemblages, alterations in associated biota, and perturbations of water movement and thermal regimes. Previous studies have shown that invasive algae can modify native habitat architecture, disrupt intricately linked food webs and alter epibiotic assemblages. In the UK, the seagrass Zostera marina supports a diverse epibiotic assemblage, influencing key factors such as sediment dynamics, depositional regime and trophic linkages. Increasing encroachment of the invasive alga Sargassum muticum into seagrass meadows changes the physical and chemical characteristics of the local environment and creates the potential for changes in the epibionts associated with the seagrass blades, threatening the integrity of the seagrass ecosystem. We investigated the effects of S. muticum invasion upon the epibiota of Z. marina in a drowned river valley in SW England seasonally from spring to autumn over four years in an in-situ manipulative experiment, comparing permanent quadrats with and without artificially introduced S. muticum. Epibiota were weighed, identified to the most detailed operational taxonomic unit (OTU) possible, and unitary organisms were enumerated. Multivariate PERMANOVA+ analysis revealed significant differences in epibiont assemblages between Sargassum treatments. Linear mixed effects models indicated that differences in epibiota assemblage composition were not reflected as significant differences in mean biomass per sample, or number of epibiont OTUs per sample. We conclude that S. muticum invasion into Z. marina meadows may significantly alter the species composition and abundance distribution of epibiotic assemblages found on the blades of the seagrass. Thus S. muticum invasion could have more wide-reaching effects on

  12. Annual variations of biomass and photosynthesis in Zostera marina at its southern end of distribution in the North Pacific

    USGS Publications Warehouse

    Cabello-Pasini, Alejandro; Munoz-Salazar, R.; Ward, D.H.

    2003-01-01

    Density, biomass, morphology, phenology and photosynthetic characteristics of Zostera marina were related to continuous measurements of in situ irradiance, attenuation coefficient and temperature at three coastal lagoons in Baja California, Mexico. In situ irradiance was approximately two-fold lower at San Quintin Bay (SQ) than at Ojo de Liebre Lagoon (OL) and San Ignacio Lagoon (SI). As a consequence of the greater irradiance, plants at OL and SI were established 1 m deeper within the water column than those at SQ. At SQ, there was a four-fold variation in biomass of Z. marina caused by changes on shoot length and not shoot density, while at OL and SI biomass and shoot length did not fluctuate significantly throughout the year. Reproductive shoot density reached maximum values concomitantly with the greatest irradiance during spring-summer, however, the density was approximately three-fold greater at SQ than at the southern coastal lagoons. While irradiance levels were two-fold greater at the southern lagoons, in general, photosynthetic characteristics were similar among all three lagoons. The hours of light saturated photosynthesis, calculated from their photosynthetic characteristics and irradiance measurements, suggest that photosynthesis of shoots from OL and SI are saturated for more than 6 h per day throughout the year, while shoots from SQ are likely light limited during approximately 15% of the year. Consequently, an increase in attenuation coefficient values in the water column will likely decrease light availability to Z. marina plants at SQ, potentially decreasing their survival. ?? 2003 Elsevier Science B.V. All rights reserved.

  13. Expression and characterization analysis of type 2 metallothionein from grey mangrove species (Avicennia marina) in response to metal stress.

    PubMed

    Huang, Guo-Yong; Wang, You-Shao

    2010-08-01

    Metallothioneins (MTs) are a family of low-molecular-weight cysteine-rich proteins and are thought to play possible roles in metal metabolism or detoxification. To evaluate the roles of metallothioneins in metal homeostasis or tolerance in Avicennia marina, a real-time quantitative PCR protocol was developed to directly evaluate the expression of AmMT2 mRNA, when A. marina seedlings were exposed to different concentrations of zinc (Zn), copper (Cu) or lead (Pb) for 3 and 7d. Real-time quantitative PCR results indicated that the regulation of AmMT2 mRNA expression by Zn, Cu and Pb was strongly dependent on concentration and time of exposure. A significant increase in the transcripts of AmMT2 gene was also found in response to Zn, Cu and Pb, at least under some experimental conditions. When AmMT2 was overexpressed in Escherichia coli BL21 as a carboxy-terminal extension of glutathione-S-transferase (GST), the transgenic bacteria showed an increased tolerance to Zn, Cu, Pb and Cd exposure as compared to control strains. Moreover, GST-AmMT2 was purified from E. coli cells grown in the presence of 400 microM Zn, Cu, Pb or Cd. The purified GST-AmMT2 fusion protein could bind higher levels of all four metals than GST alone. Taken together, these data support the hypothesis that AmMT2 may be involved in processes of metal homeostasis or tolerance in A. marina.

  14. Modified molecular interactions of the pheophytin and plastoquinone electron acceptors in photosystem II of chlorophyll D-containing Acaryochloris marina as revealed by FTIR spectroscopy.

    PubMed

    Sano, Yuko; Endo, Kaichiro; Tomo, Tatsuya; Noguchi, Takumi

    2015-08-01

    Acaryochloris marina is a unique cyanobacterium that contains chlorophyll (Chl) d as a major pigment. Because Chl d has smaller excitation energy than Chl a used in ordinary photosynthetic organisms, the energetics of the photosystems of A. marina have been the subject of interest. It was previously shown that the redox potentials (E m's) of the redox-active pheophytin a (Pheo) and the primary plastoquinone electron acceptor (QA) in photosystem II (PSII) of A. marina are higher than those in Chl a-containing PSII, to compensate for the smaller excitation energy of Chl d (Allakhverdiev et al., Proc Natl Acad Sci USA 107: 3924-3929, 2010; ibid. 108: 8054-8058, 2011). To clarify the mechanisms of these E m increases, in this study, we have investigated the molecular interactions of Pheo and QA in PSII core complexes from A. marina using Fourier transform infrared (FTIR) spectroscopy. Light-induced FTIR difference spectra upon single reduction of Pheo and QA showed that spectral features in the regions of the keto and ester C=O stretches and the chlorin ring vibrations of Pheo and in the CO/CC stretching region of the Q A (-) semiquinone anion in A. marina are significantly different from those of the corresponding spectra in Chl a-containing cyanobacteria. These observations indicate that the molecular interactions, including the hydrogen bond interactions at the C=O groups, of these cofactors are modified in their binding sites of PSII proteins. From these results, along with the sequence information of the D1 and D2 proteins, it is suggested that A. marina tunes the E m's of Pheo and QA by altering nearby hydrogen bond networks to modify the structures of the binding pockets of these cofactors.

  15. Rothia marina sp. nov., isolated from an intertidal sediment of the South China Sea.

    PubMed

    Liu, Zhu-Xiang; Yang, Ling-Ling; Huang, Ying; Zhao, Hu; Liu, He; Tang, Shu-Kun; Li, Wen-Jun; Chen, Yi-Guang

    2013-09-01

    A novel non-sporulating, non-motile, catalase-positive, oxidase-negative, facultatively anaerobic, Gram-positive coccus, designated strain JSM 078151(T), was isolated from an intertidal sediment sample collected from Naozhou Island in the South China Sea, China. Growth was found to occur in the presence of 0-15 % (w/v) NaCl (optimum 0.5-3 % (w/v) NaCl), at pH 6.5-10.5 (optimum pH 7.0-8.0) and at 5-35 °C (optimum 25-30 °C). The peptidoglycan type was determined to be A3a, containing lysine, glutamic acid and alanine. The major cellular fatty acid identified was anteiso-C15:0 and the predominant menaquinones are MK-7 and MK-8. The polar lipids were found to consist of diphosphatidylglycerol, phosphatidylglycerol, glycolipid and one unidentified phospholipid. The genomic DNA G+C content of strain JSM 078151(T) was determined to be 55.2 mol%. A phylogenetic analysis based on 16S rRNA gene sequence comparisons revealed that strain JSM 078151(T) should be assigned to the genus Rothia, and was most closely related to Rothia nasimurium CCUG 35957(T) (98.3 % sequence similarity), followed by Rothia amarae J18(T) (97.5 %) and Rothia terrae L-143(T) (97.3 %). A combination of phylogenetic analysis, DNA-DNA relatedness values, phenotypic characteristics and chemotaxonomic data supports the suggestion that strain JSM 078151(T) represents a novel species of the genus Rothia, for which the name Rothia marina sp. nov. is proposed. The type strain is JSM 078151(T) (= DSM 21080(T) = KCTC 19432(T)).

  16. On the profile evolution of three artificial pebble beaches at Marina di Pisa, Italy

    NASA Astrophysics Data System (ADS)

    Bertoni, Duccio; Sarti, Giovanni

    2011-07-01

    In this paper, the profiles of three artificial coarse-grained beaches located at Marina di Pisa (Tuscany, Italy) were monitored from April 2008 to May 2009 in order to define the response of the beaches to major storms that occurred during the study. Two beaches are similar, the third differs in length and in the level of protection, being less than half the length of the others and devoid of an offshore submerged breakwater. The work was achieved by means of accurate topographic surveys intended to reconstruct the beach profile from the backshore up to the foreshore-upper shoreface transition (step). The surveys were performed with an RTK-GPS instrument, which provided extremely precise recording of the beach. The most significant features of the beaches were tracked during each survey; in particular, the landward foot of the storm berm, the crest of the storm berm, the coastline, and the step crest were monitored. Five cross-shore transects were traced on each beach. Along these transects, any meaningful slope change was recorded to obtain accurate sections of the beach. The field datasets were processed with AutoCAD software to compare the beach profile evolution during the year-long research. The results showed a comparable evolution of the twin beaches: the resulting storm berm retreat of about 15 to 19 m is a remarkable feature considering the coarse grain size and the offshore protection. Due to the absence of the breakwater, the third beach was characterized by even higher values of recession (over 20 m), and showed hints of wave reflection-related processes after the huge, steep storm berm had been formed and grown after the high energy events. These processes were not as evident on the twin beaches. These results underline the different response of three similar protection schemes, and the importance that frequent monitoring of the beach morphology holds when it comes to coastal management issues.

  17. The effect of colliery waste on the feeding of the lugworm Arenicola marina

    NASA Astrophysics Data System (ADS)

    Hyslop, Brian T.; Davies, Mark S.

    1999-09-01

    Sandy shores in northeast England that are heavily contaminated by colliery waste (essentially coal particles) have lower species richnesses and diversities than less contaminated shores. Analyses of the sediment utilised putatively as food, the gut contents, and the faecal casts of lugworms Arenicola marina (L.) (Annelida: Polychaeta) from a heavily contaminated site (Newbiggin) and a site lightly contaminated (Seahouses) were performed to determine the effect of colliery waste on the feeding of this deposit-feeder, which has been reported to decline in abundance at contaminated sites. Colliery-waste content of sediment was 10 to 18 times greater at Newbiggin than at Seahouses. At Newbiggin the sediment contained significantly higher levels of colliery waste than did the gut contents or faeces, which were not significantly different from each other. At Seahouses the colliery-waste contents of sediment, gut, and faeces were not significantly different. Particle-size distributions in sediment, gut, and faeces from lugworms at Seahouses were similar, while at Newbiggin the sediment contained a greater proportion of larger particles (>250 μm) than did the gut contents or the faeces. These results suggest that lugworms at heavily contaminated sites are selective feeders, rejecting coal particles perhaps on the basis of particle size. We did not detect selectivity in animals at the less contaminated site. Lugworms from Seahouses, however, avoided burrowing into sediment containing colliery waste both when the waste was on the surface and buried. Lugworms from Newbiggin avoided burrowing into colliery waste only when it was buried. These data suggest a chemosensory response to colliery waste.

  18. The uptake and distribution of copper in the lugworm, Arenicola marina (annelida, polychaeta)

    NASA Astrophysics Data System (ADS)

    Everaarts, J. M.

    The uptake and distribution of copper in the polychaetous worm Arenicola marina (L.) have been studied both under experimental conditions and in a natural environmental situation, by analyzing the whole body and three body-compartments; body-wall, intestine and blood. No relationship between the copper concentrations in various fractions of the sediment and any of the body-compartments could be found. Under experimental conditions, the copper concentrations in the blood were higher than in the intestine and the body-wall. Uptake of dissolved copper occurred directly from the water. Copper uptake also occurs via sediment at high copper concentrations of the silt fraction of the habitat sediment. The data obtained from the field showed small differences in copper concentrations between blood, intestine and body-wall. The copper concentrations in the blood varied from 1 to 4 μ·cm -3, in the inetestine from 2 to 6μg·g -1, and in the body-wall from 1 to 3 μg·g -1 wet weight. A significant correlation existed between blood cooper concentration and body weight: small (young) individuals had higher copper concentrations in their blood than larger (older) ones. This means that young animals will encounter more stress at similar environmental copper levels than older animals. The concentration in the different body-compartments appears to be dependent on the season the samples were taken. The copper concentration in the intestine and the body decreased from April to November, whereas the blood copper concentration increased.

  19. An effective transplanting technique using shells for restoration of Zostera marina habitats.

    PubMed

    Lee, Kun-Seop; Park, Jung-Im

    2008-05-01

    Significant declines in seagrass coverage have occurred in many parts of the world. In recent decades, transplanting projects for seagrass restoration at die-off areas have been attempted, but most current seagrass transplanting techniques are cost and labor intensive. We have developed a new seagrass transplanting method in which oyster shells are used as an anchoring device, and does not require SCUBA diving for sub-tidal planting. Here, we tested the shell method for feasibility and efficiency in large-scale seagrass restoration. Planting units consisting of two Zostera marina shoots anchored to one oyster shell were dropped from a boat to settle on the sediment at the test site. Four transplanting trials were conducted throughout the experimental period (December 2003, January, February, and November 2004) in Koje Bay on the southern coast of Korea. Eelgrass shoots planted using the shell method successfully established at the test areas, and the survival rates of transplants were comparable to those obtained using other common planting techniques. The transplant shoot density declined during the first 2-3 months following transplantation due to the initial transplant shock, and then surviving shoots became established at the sites and produced new lateral shoots after these periods. Plant size and leaf productivity of transplants 7 months post-transplanting were similar to or exceeded those of pre-existed shoots, suggesting that the physiological status of transplants is similar to that of natural population after 7 months. Because the shell method did not require workers to be in the water, the method was cost and labor effective. Additionally, given that shells originate from marine environments, the shell method did not leave any hazardous materials in the transplanting areas after restoration.

  20. Evidence of additional excitation energy transfer pathways in the phycobiliprotein antenna system of Acaryochloris marina.

    PubMed

    Nganou, A C; David, L; Adir, N; Pouhe, D; Deen, M J; Mkandawire, M

    2015-02-01

    To improve the energy conversion efficiency of solar organic cells, the clue may lie in the development of devices inspired by an efficient light harvesting mechanism of some aquatic photosynthetic microorganisms that are adapted to low light intensity. Consequently, we investigated the pathways of excitation energy transfer (EET) from successive light harvesting pigments to the low energy level inside the phycobiliprotein antenna system of Acaryochloris marina, a cyanobacterium, using a time resolved absorption difference spectroscopy with a resolution time of 200 fs. The objective was to understand the actual biochemical process and pathways that determine the EET mechanism. Anisotropy of the EET pathway was calculated from the absorption change trace in order to determine the contribution of excitonic coupling. The results reveal a new electron energy relaxation pathway of 14 ps inside the phycocyanin component, which runs from phycocyanin to the terminal emitter. The bleaching of the 660 nm band suggests a broader absorption of the terminal emitter between 660 nm and 675 nm. Further, there are trimer depolarization kinetics of 450 fs and 500 fs in high and low ionic strength, respectively, which arise from the relaxation of the β84 and α84 in adjacent monomers of phycocyanin. Under conditions of low ionic strength buffer solution, the evolution of the kinetic amplitude during the depolarization of the trimer is suggestive of trimer conservation within the phycocyanin hexamer. The anisotropy values were 0.38 and 0.40 in high and in low ionic strength, respectively, indicating that there is no excitonic delocalization in the high energy level of phycocyanin hexamers.

  1. Deterioration of eelgrass, Zostera marina L., meadows by water pollution in Seto Inland Sea, Japan.

    PubMed

    Tamaki, Hitoshi; Tokuoka, Makoto; Nishijima, Wataru; Terawaki, Toshinobu; Okada, Mitsumasa

    2002-11-01

    Survival of transplanted Zostera marina L. (eelgrass) and environmental conditions (water quality, bottom sediments, sedimentation on leaves and flow regime) were studied concurrently in the center, edge, and at the outside of a eelgrass meadow located in a eutrophic coastal zone in northern Hiroshima Bay, Seto Inland Sea, Japan. Eelgrass transplants at the outside of the meadow declined significantly, whereas those at the center were consistently well established. Silt content in the bottom sediments at the outside was higher than that at the center. The sediment was oxic from the surface to 2 cm deep at the center, whereas those at the edge and the outside were reductive almost from the surface. The sediment characteristics typical in eutrophic water seemed to be a factor responsible for the deterioration of eelgrass meadows. Although suspended solid concentrations in the water columns were almost the same, the amount of sediments deposited on leaves of eelgrass at the outside was higher than that at the center of the meadow. The amount of the deposition at the outside seems to be enough to inhibit photosynthesis; i.e. photosynthetic photon flux density (PPFD) available for eelgrass was only 36% of that without any deposition. The deposition in the center, however, was small enough to allow 84% of the original PPFD. Flow rates, determined at 30 cm above the bottom, a half height of average eelgrass, suggested that the rate at the outside was not enough to remove deposited sediments from the surface of eelgrass leaves. Thus, the large amount of sediment deposition caused by water pollution and/or eutrophication seemed to be another factor to inhibit the survival of eelgrass at the outside edge of the meadow.

  2. Lifting the Curtain? The Microtubular Cytoskeleton of Oxyrrhis marina (Dinophyceae) and its Rearrangement during Phagocytosis.

    PubMed

    Höhfeld, I; Melkonian, M

    1998-02-01

    The cortical microtubular cytoskeleton of the colorless, phagotrophic dinoflagellate Oxyrrhis marina has been investigated by immunofluorescence and transmission electron microscopy. It consists of two systems, an anterior system comprising microtubular bands (of 2-4 microtubules each) which extend from a focal point at the cell apex to about three-quarters of the cell length where they either become transversely oriented (on the ventral right surface of the cell) or abut transversely oriented microtubules (on the dorsal and ventral left cell surface); and a posterior system in which microtubular bands extend from a focal point near the basal apparatus posteriorly around the antapex of the cell to become transversely oriented in the region where they meet the abutting anterior microtubular bands. The peripheral cytoskeleton of Oxyrrhis contains no continuous pole-to-pole microtubules and is thus basically similar to that of other dinoflagellates. Upon phagotrophic feeding the peripheral microtubular cytoskeleton undergoes reversible rearrangements. The non-permanent cytostome is located at the right ventral surface of the cell between the ventral ridge microtubules (vrm) and the groove of the longitudinal flagellum. During phagocytosis the anteriorly focused microtubular bands of the peripheral cytoskeleton near the right ventral surface of the cell are 'lifted' or 'pushed' towards the vrm to enable uptake of food organisms of diverse size and shape. Within minutes after phagocytosis the microtubular bands are relocated to their former position. We conclude that the organization of a peripheral microtubular cytoskeleton from two opposite focal points provided the dinoflagellates with the flexibility needed to evolve the multitude of phagocytotic mechanisms that characterize this group of protists today.

  3. Photocycle and vectorial proton transfer in a rhodopsin from the eukaryote Oxyrrhis marina.

    PubMed

    Janke, Christian; Scholz, Frank; Becker-Baldus, Johanna; Glaubitz, Clemens; Wood, Phillip G; Bamberg, Ernst; Wachtveitl, Josef; Bamann, Christian

    2013-04-23

    Retinylidene photoreceptors are ubiquitously present in marine protists as first documented by the identification of green proteorhodopsin (GPR). We present a detailed investigation of a rhodopsin from the protist Oxyrrhis marina (OR1) with respect to its spectroscopic properties and to its vectorial proton transport. Despite its homology to GPR, OR1's features differ markedly in its pH dependence. Protonation of the proton acceptor starts at pH below 4 and is sensitive to the ionic conditions. The mutation of a conserved histidine H62 did not influence the pK(a) value in a similar manner as in other proteorhodopsins where the charged histidine interacts with the proton acceptor forming the so-called His-Asp cluster. Mutational and pH-induced effects were further reflected in the temporal behavior upon light excitation ranging from femtoseconds to seconds. The primary photodynamics exhibits a high sensitivity to the environment of the proton acceptor D100 that are correlated to the different initial states. The mutation of the H62 does not affect photoisomerization at neutral pH. This is in agreement with NMR data indicating the absence of the His-Asp cluster. The subsequent steps in the photocycle revealed protonation reactions at the Schiff base coupled to proton pumping even at low pH. The main electrogenic steps are associated with the reprotonation of the Schiff base and internal proton donor. Hence, OR1 shows a different theme of the His-Asp organization where the low pK(a) of the proton acceptor is not dominated by this interaction, but by other electrostatic factors.

  4. Distribution, structure and function of Nordic eelgrass (Zostera marina) ecosystems: implications for coastal management and conservation

    PubMed Central

    Boström, Christoffer; Baden, Susanne; Bockelmann, Anna-Christina; Dromph, Karsten; Fredriksen, Stein; Gustafsson, Camilla; Krause-Jensen, Dorte; Möller, Tiia; Nielsen, Søren Laurentius; Olesen, Birgit; Olsen, Jeanine; Pihl, Leif; Rinde, Eli

    2014-01-01

    This paper focuses on the marine foundation eelgrass species, Zostera marina, along a gradient from the northern Baltic Sea to the north-east Atlantic. This vast region supports a minimum of 1480 km2 eelgrass (maximum >2100 km2), which corresponds to more than four times the previously quantified area of eelgrass in Western Europe.Eelgrass meadows in the low salinity Baltic Sea support the highest diversity (4–6 spp.) of angiosperms overall, but eelgrass productivity is low (<2 g dw m-2 d-1) and meadows are isolated and genetically impoverished. Higher salinity areas support monospecific meadows, with higher productivity (3–10 g dw m-2 d-1) and greater genetic connectivity. The salinity gradient further imposes functional differences in biodiversity and food webs, in particular a decline in number, but increase in biomass of mesograzers in the Baltic.Significant declines in eelgrass depth limits and areal cover are documented, particularly in regions experiencing high human pressure. The failure of eelgrass to re-establish itself in affected areas, despite nutrient reductions and improved water quality, signals complex recovery trajectories and calls for much greater conservation effort to protect existing meadows.The knowledge base for Nordic eelgrass meadows is broad and sufficient to establish monitoring objectives across nine national borders. Nevertheless, ensuring awareness of their vulnerability remains challenging. Given the areal extent of Nordic eelgrass systems and the ecosystem services they provide, it is crucial to further develop incentives for protecting them. © 2014 The Authors. Aquatic Conservation: Marine and Freshwater Ecosystems published by John Wiley & Sons, Ltd. PMID:26167100

  5. Dr. Zompo: an online data repository for Zostera marina and Posidonia oceanica ESTs.

    PubMed

    Wissler, L; Dattolo, E; Moore, A D; Reusch, T B H; Olsen, J L; Migliaccio, M; Bornberg-Bauer, E; Procaccini, G

    2009-01-01

    As ecosystem engineers, seagrasses are angiosperms of paramount ecological importance in shallow shoreline habitats around the globe. Furthermore, the ancestors of independent seagrass lineages have secondarily returned into the sea in separate, independent evolutionary events. Thus, understanding the molecular adaptation of this clade not only makes significant contributions to the field of ecology, but also to principles of parallel evolution as well. With the use of Dr. Zompo, the first interactive seagrass sequence database presented here, new insights into the molecular adaptation of marine environments can be inferred. The database is based on a total of 14 597 ESTs obtained from two seagrass species, Zostera marina and Posidonia oceanica, which have been processed, assembled and comprehensively annotated. Dr. Zompo provides experimentalists with a broad foundation to build experiments and consider challenges associated with the investigation of this class of non-domesticated monocotyledon systems. Our database, based on the Ruby on Rails framework, is rich in features including the retrieval of experimentally determined heat-responsive transcripts, mining for molecular markers (SSRs and SNPs), and weighted key word searches that allow access to annotation gathered on several levels including Pfam domains, GeneOntology and KEGG pathways. Well established plant genome sites such as The Arabidopsis Information Resource (TAIR) and the Rice Genome Annotation Project are interfaced by Dr. Zompo. With this project, we have initialized a valuable resource for plant biologists in general and the seagrass community in particular. The database is expected to grow together with more data to come in the near future, particularly with the recent initiation of the Zostera genome sequencing project.The Dr. Zompo database is available at http://drzompo.uni-muenster.de/

  6. Dr. Zompo: an online data repository for Zostera marina and Posidonia oceanica ESTs.

    PubMed

    Wissler, L; Dattolo, E; Moore, A D; Reusch, T B H; Olsen, J L; Migliaccio, M; Bornberg-Bauer, E; Procaccini, G

    2009-01-01

    As ecosystem engineers, seagrasses are angiosperms of paramount ecological importance in shallow shoreline habitats around the globe. Furthermore, the ancestors of independent seagrass lineages have secondarily returned into the sea in separate, independent evolutionary events. Thus, understanding the molecular adaptation of this clade not only makes significant contributions to the field of ecology, but also to principles of parallel evolution as well. With the use of Dr. Zompo, the first interactive seagrass sequence database presented here, new insights into the molecular adaptation of marine environments can be inferred. The database is based on a total of 14 597 ESTs obtained from two seagrass species, Zostera marina and Posidonia oceanica, which have been processed, assembled and comprehensively annotated. Dr. Zompo provides experimentalists with a broad foundation to build experiments and consider challenges associated with the investigation of this class of non-domesticated monocotyledon systems. Our database, based on the Ruby on Rails framework, is rich in features including the retrieval of experimentally determined heat-responsive transcripts, mining for molecular markers (SSRs and SNPs), and weighted key word searches that allow access to annotation gathered on several levels including Pfam domains, GeneOntology and KEGG pathways. Well established plant genome sites such as The Arabidopsis Information Resource (TAIR) and the Rice Genome Annotation Project are interfaced by Dr. Zompo. With this project, we have initialized a valuable resource for plant biologists in general and the seagrass community in particular. The database is expected to grow together with more data to come in the near future, particularly with the recent initiation of the Zostera genome sequencing project.The Dr. Zompo database is available at http://drzompo.uni-muenster.de/ PMID:20157482

  7. Urinary corticosterone metabolite responses to capture and captivity in the cane toad (Rhinella marina).

    PubMed

    Narayan, Edward J; Cockrem, John F; Hero, Jean-Marc

    2011-09-01

    Urinary corticosterone metabolite responses to capture have recently been shown for the first time in amphibians, and in the present study urinary corticosterone metabolite responses to capture and to confinement in captivity were measured in adult cane toads (Rhinella marina) in Queensland, Australia. An adrenocorticotropic hormone (ACTH) challenge was used to provide a biological validation for urinary corticosterone metabolite concentrations measured by radioimmunoassay (RIA). Urinary corticosterone metabolite increased 1-2 days after ACTH but not saline injection and then returned to initial values, indicating that the RIA could detect changes in corticosterone secretion in toads. Urinary corticosterone metabolite responses to short-term capture and restraint in plastic bags were first apparent 2h after capture of wild toads. Toads held communally in captivity for 5 days had elevated urinary corticosterone metabolite concentrations. Mean corticosterone concentrations declined significantly after a further 7 days in individual housing chambers. There was no sex difference in urinary corticosterone metabolite responses of toads to ACTH challenge, short-term capture or captivity. The relative amount of variation in the mean corticosterone responses was quantified by calculating coefficients of variation (CV) for each mean corticosterone response. Mean corticosterone at 0 min was more variable for captive toads than wild toads. Furthermore, initial corticosterone concentrations (0 min) were more variable than concentrations during the ACTH challenge, short-term capture and captivity. There was little change in the amount of variation of mean corticosterone levels between male and female toads with increasing time in captivity (12-29 days). This study has shown individual corticosterone responses of amphibians for the first-time, and has provided a novel method for quantifying the relative amount of variation in amphibian corticosterone responses.

  8. Zooshikella marina sp. nov. a cycloprodigiosin- and prodigiosin-producing marine bacterium isolated from beach sand.

    PubMed

    Ramaprasad, E V V; Bharti, Dave; Sasikala, Ch; Ramana, Ch V

    2015-12-01

    A red-pigmented bacterium producing a metallic green sheen, designated strain JC333T, was isolated from a sand sample collected from Shivrajpur-Kachigad beach, Gujarat, India. Phylogenetic analyses based on the 16S rRNA gene sequence of strain JC333T showed highest sequence similarity to Zooshikella ganghwensis JC2044T (99.24 %) and less than 91.94 % similarity with other members of the class Gammaproteobacteria. DNA-DNA hybridizations between JC333T and Z. ganghwensis JC2044T showed low relatedness values of 19 ± 1.3 % (reciprocal 21 ± 2.2 %). The major respiratory quinone was ubiquinone-9 (Q9) and the polar lipid profile was composed of the major components diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, an unidentified aminophospholipid and an unidentified lipid. The presence of C16 : 1ω7c/C16 : 1ω6c, C16 : 0, C18 : 1ω7c and C12 : 0 as major fatty acids supported the affiliation of strain JC333T to the genus Zooshikella. Prodigiosin, cycloprodigiosin and eight other prodigiosin analogues were the pigments of JC333T. Characterization based on 16S rRNA gene sequence analysis, physiological parameters, pigment analysis, ubiquinone, and polar lipid and fatty acid compositions revealed that JC333T represents a novel species of the genus Zooshikella, for which the name Zooshikella marina sp. nov. is proposed. The type strain is JC333T ( = KCTC 42659T = LMG 28823T).

  9. Two new species of Oswaldocruzia (Nematoda: Trichostrongylina: Molineoidea) parasites of the cane toad Rhinella marina (Amphibia: Anura) from Peru.

    PubMed

    Guerrero, Ricardo

    2013-03-01

    Two new species of Oswaldocruzia, O. manuensis sp. nov., and O. urubambaensis sp. nov. are described and illustrated from Peru, these are parasites of the cane toad Rhinella marina. O. manuensis is characterized by having cervical alae which are not well developed, ridges without chitinous supports, caudal bursa type II and branches of fork of dissimilar length. O. urubambaensis is characterized by a caudal bursa of type I, ridges with chitinous supports, a thin cephalic vesicle and origin of rays 9 in tip of the dorsal trunk. PMID:23377910

  10. Temperature, salinity, insolation and wasting disease of eelgrass ( Zostera marina L.) in the Dutch Wadden Sea in the 1930's

    NASA Astrophysics Data System (ADS)

    Giesen, W. B. J. T.; Van Katwijk, M. M.; Den Hartog, C.

    The possible role of temperature, salinity and insolation during the outbreak of 'wasting disease' of eelgrass ( Zostera marina L.) in the 1930's was investigated for the Dutch Wadden Sea. An analysis of existing data indicates that salinity and temperature fluctuations played only a minor role. More important was the effect of insolation, as the early 1930's witnessed dull to very dull growing seasons. Daily sunshine figures of 1931 and 1932 were incorporated in an eelgrass growth simulation model. Simulation experiments predict that much of the then existing sublittoral eelgrass population would have succumbed, due to poor illumination conditions, even in the absence of the wasting disease.

  11. Hybridization and massive mtDNA unidirectional introgression between the closely related Neotropical toads Rhinella marina and R. schneideri inferred from mtDNA and nuclear markers

    PubMed Central

    2011-01-01

    Background The classical perspective that interspecific hybridization in animals is rare has been changing due to a growing list of empirical examples showing the occurrence of gene flow between closely related species. Using sequence data from cyt b mitochondrial gene and three intron nuclear genes (RPL9, c-myc, and RPL3) we investigated patterns of nucleotide polymorphism and divergence between two closely related toad species R. marina and R. schneideri. By comparing levels of differentiation at nuclear and mtDNA levels we were able to describe patterns of introgression and infer the history of hybridization between these species. Results All nuclear loci are essentially concordant in revealing two well differentiated groups of haplotypes, corresponding to the morphologically-defined species R. marina and R. schneideri. Mitochondrial DNA analysis also revealed two well-differentiated groups of haplotypes but, in stark contrast with the nuclear genealogies, all R. schneideri sequences are clustered with sequences of R. marina from the right Amazon bank (RAB), while R. marina sequences from the left Amazon bank (LAB) are monophyletic. An Isolation-with-Migration (IM) analysis using nuclear data showed that R. marina and R. schneideri diverged at ≈ 1.69 Myr (early Pleistocene), while R. marina populations from LAB and RAB diverged at ≈ 0.33 Myr (middle Pleistocene). This time of divergence is not consistent with the split between LAB and RAB populations obtained with mtDNA data (≈ 1.59 Myr), which is notably similar to the estimate obtained with nuclear genes between R. marina and R. schneideri. Coalescent simulations of mtDNA phylogeny under the speciation history inferred from nuclear genes rejected the hypothesis of incomplete lineage sorting to explain the conflicting signal between mtDNA and nuclear-based phylogenies. Conclusions The cytonuclear discordance seems to reflect the occurrence of interspecific hybridization between these two closely related

  12. Comparative study on the toxic effects of red tide flagellates Heterocapsa circularisquama and Chattonella marina on the short-necked clam (Ruditapes philippinarum).

    PubMed

    Kim, Daekyung; Choi, Kwang-Sik; Hong, Hyun-Ki; Jiang, Zedong; Zou, Yanan; Choi, Kyu-Sung; Yamasaki, Yasuhiro; Matsuyama, Yukihiko; Yamaguchi, Kenichi; Oda, Tatsuya

    2011-01-01

    Heterocapsa circularisquama showed much higher toxic effects on short-necked clams than Chattonella marina. Clams exposed to H. circularisquama exhibited morphological changes concomitant with an accumulation of mucus-like substances in the gills, a profound reduction in filtration activity, and lysosomal destabilization in hemocytes. Chattonella marina was less effective than H. circularisquama, and Heterocapsa triquetra was almost harmless in all these criteria. These results suggest that H. circularisquama exerted its lethal effect on short-necked clams through gill tissue damage and subsequent induction of physiological stress.

  13. Genetic structure at range edge: low diversity and high inbreeding in Southeast Asian mangrove (Avicennia marina) populations.

    PubMed

    Arnaud-Haond, S; Teixeira, S; Massa, S I; Billot, C; Saenger, P; Coupland, G; Duarte, C M; Serrão, E A

    2006-10-01

    Understanding the genetic composition and mating systems of edge populations provides important insights into the environmental and demographic factors shaping species' distribution ranges. We analysed samples of the mangrove Avicennia marina from Vietnam, northern Philippines and Australia, with microsatellite markers. We compared genetic diversity and structure in edge (Southeast Asia, and Southern Australia) and core (North and Eastern Australia) populations, and also compared our results with previously published data from core and southern edge populations. Comparisons highlighted significantly reduced gene diversity and higher genetic structure in both margins compared to core populations, which can be attributed to very low effective population size, pollinator scarcity and high environmental pressure at distribution margins. The estimated level of inbreeding was significantly higher in northeastern populations compared to core and southern populations. This suggests that despite the high genetic load usually associated with inbreeding, inbreeding or even selfing may be advantageous in margin habitats due to the possible advantages of reproductive assurance, or local adaptation. The very high level of genetic structure and inbreeding show that populations of A. marina are functioning as independent evolutionary units more than as components of a metapopulation system connected by gene flow. The combinations of those characteristics make these peripheral populations likely to develop local adaptations and therefore to be of particular interest for conservation strategies as well as for adaptation to possible future environmental changes. PMID:17032254

  14. Diversity and N-acyl-homoserine lactone production by Gammaproteobacteria associated with Avicennia marina rhizosphere of South Indian mangroves.

    PubMed

    Viswanath, Ganga; Jegan, Sekar; Baskaran, Viswanathan; Kathiravan, Raju; Prabavathy, Vaiyapuri Ramalingam

    2015-07-01

    The diversity of N-acyl-homoserine lactone (AHL)-producing rhizosphere bacterial community associated with Avicennia marina in the mangrove ecosystems of South India was investigated. Approximately 800 rhizobacteria were isolated from A. marina, and they were screened for the production of AHL using two biosensors, Chromobacterium violaceum CV026 and Agrobacterium tumefaciens NTL4 (pZLR4). Among the total isolates screened, 7% of the rhizobacteria showed positive induction for AHL signals. The BOX-PCR profile of 56 positive isolates represented 11 distinct genotypic groups. Phylogenetic analyses of the 16S rRNA sequences of 16 representatives showed that the isolates belonged to the class Gammaproteobacteria, which represented six different genera: Pseudomonas, Aeromonas, Vibrio, Photobacterium, Serratia and Halomonas. The study also identified three AHL-producing species, namely, Photobacterium halotolerans MSSRF QS48, Vibrio xiamenensis MSSRF QS47 and Pseudomonas sp. MSSRF QS1 that had not been reported previously. AHL profiling by TLC detected short chains C4, C6 and C8-HSL, and long chains C10 and C12-HSL with both unsubstituted and substituted side chains among the 16 representative AHL positives. This is the first report concerning the diversity of AHL-producing Gammaproteobacteria from mangrove ecosystems exhibiting diverse AHL profiles. PMID:25956585

  15. Aureispira marina gen. nov., sp. nov., a gliding, arachidonic acid-containing bacterium isolated from the southern coastline of Thailand.

    PubMed

    Hosoya, Shoichi; Arunpairojana, Vullapa; Suwannachart, Chatrudee; Kanjana-Opas, Akkharawit; Yokota, Akira

    2006-12-01

    Three strains of gliding bacteria, 24(T), 62 and 71, isolated from a marine sponge and algae from the southern coastline of Thailand, were studied using a polyphasic approach to clarify their taxonomic positions. A phylogenetic analysis based on 16S rRNA gene sequences showed that the three isolates formed a distinct lineage within the family 'Saprospiraceae' of the phylum Bacteroidetes and were related to members of the genus Saprospira. The G+C contents of the isolates were in the range 38-39 mol%. The major respiratory quinone was MK-7. The predominant cellular fatty acids were 20 : 4omega6c (arachidonic acid), 16 : 0 and iso-17 : 0. On the basis of morphological, physiological and chemotaxonomic characteristics, together with DNA-DNA hybridization data and 16S rRNA gene sequences, the isolates represent a novel species of a novel genus, for which the name Aureispira marina gen. nov., sp. nov. is proposed. The type strain of Aureispira marina is 24(T) (=IAM 15389(T)=TISTR 1719(T)).

  16. Thermostilla marina gen. nov., sp. nov., a thermophilic, facultatively anaerobic planctomycete isolated from a shallow submarine hydrothermal vent.

    PubMed

    Slobodkina, Galina B; Panteleeva, Angela N; Beskorovaynaya, Darya A; Bonch-Osmolovskaya, Elizaveta A; Slobodkin, Alexander I

    2016-02-01

    A novel thermophilic planctomycete (strain SVX8T) was isolated from a shallow submarine hydrothermal vent, Vulcano Island, Italy. The temperature range for growth was 30-68 °C, with an optimum at 55 °C. The pH range for growth was 5.0-9.0, with an optimum at pH 7.0-8.0. Growth was observed at NaCl concentrations ranging from 0.8 to 4.5 % (w/v) with an optimum at 2.5-3.5 % (w/v). The isolate grew anaerobically using a number of mono-, di- and polysaccharides as electron donors and nitrate or elemental sulfur as electron acceptors or by fermentation. Nitrate was reduced to nitrite; sulfur was reduced to sulfide. Strain SVX8T did not grow at atmospheric concentration of oxygen but grew microaerobically (up to 2 % oxygen in the gas phase). The G+C content of the DNA of strain SVX8T was 58.5 mol%. Based on phylogenetic position and phenotypic features, the new isolate is considered to represent a novel species belonging to a new genus in the order Planctomycetales, for which the name Thermostilla marina gen. nov., sp. nov. is proposed. The type strain of Thermostilla marina is SVX8T ( = JCM 19992T = VKM B-2881T). Strain SVX8T is the first thermophilic planctomycete isolated from a marine environment. PMID:26559645

  17. The Structure of Genetic Diversity in Eelgrass (Zostera marina L.) along the North Pacific and Bering Sea Coasts of Alaska

    USGS Publications Warehouse

    Talbot, Sandra; Sage, Kevin; Rearick, Jolene; Fowler, Megan C.; Muñiz-Salazar, Raquel; Baibak, Bethany; Wyllie-Echeverria, Sandy; Cabello-Pasini, Alehandro; Ward, David H.

    2016-01-01

    Eelgrass (Zostera marina) populations occupying coastal waters of Alaska are separated by a peninsula and island archipelago into two Large Marine Ecosystems (LMEs). From populations in both LMEs, we characterize genetic diversity, population structure, and polarity in gene flow using nuclear microsatellite fragment and chloroplast and nuclear sequence data. An inverse relationship between genetic diversity and latitude was observed (heterozygosity: R2 = 0.738, P < 0.001; allelic richness: R2 = 0.327, P = 0.047), as was significant genetic partitioning across most sampling sites (θ = 0.302, P < 0.0001). Variance in allele frequency was significantly partitioned by region only in cases when a population geographically in the Gulf of Alaska LME (Kinzarof Lagoon) was instead included with populations in the Eastern Bering Sea LME (θp = 0.128–0.172; P < 0.003), suggesting gene flow between the two LMEs in this region. Gene flow among locales was rarely symmetrical, with notable exceptions generally following net coastal ocean current direction. Genetic data failed to support recent proposals that multiple Zostera species (i.e. Z. japonica and Z. angustifolia) are codistributed with Z. marina in Alaska. Comparative analyses also failed to support the hypothesis that eelgrass populations in the North Atlantic derived from eelgrass retained in northeastern Pacific Last Glacial Maximum refugia. These data suggest northeastern Pacific populations are derived from populations expanding northward from temperate populations following climate amelioration at the terminus of the last Pleistocene glaciation.

  18. Survey of helminths, ectoparasites, and chytrid fungus of an introduced population of cane toads, Rhinella marina (Anura: Bufonidae), from Grenada

    USGS Publications Warehouse

    Drake, Michael C.; Zieger, Ulrike; Groszkowski, Andrew; Gallardo, Bruce; Sages, Patti; Reavis, Roslyn; Faircloth, Leslie; Jacobson, Krystin; Lonce, Nicholas; Pinckney, Rhonda D.; Cole, Rebecca Ann

    2014-01-01

    One hundred specimens of Rhinella marina, (Anura: Bufonidae) collected in St. George's parish, Grenada, from September 2010 to August 2011, were examined for the presence of ectoparasites and helminths. Ninety-five (95%) toads were parasitized by one or more parasite species. Nine species of parasites were found: 1 digenean, 2 acanthocephalans, 4 nematodes, 1 arthropod and 1 pentastome. The endoparasites represented 98.9% of the total number of parasite specimens collected. Grenada represents a new locality record for Mesocoelium monas, Raillietiella frenatus, Pseudoacanthacephalus sp., Aplectana sp., Physocephalus sp., Acanthacephala cystacanth and Physalopteridae larvae. The digenean M. monas occurred with the highest prevalence of 82%, contrasting many studies of R. marina where nematodes dominate the parasite infracommunity. Female toads were found to have a significantly higher prevalence of Amblyomma dissimile than male toads. Only two parasites exhibited a significant difference between wet and dry season with Parapharyngodon grenadensis prevalence highest in the wet season and A. dissimile prevalence highest during the dry season. Additionally, A. dissimile was significantly more abundant during the dry season.

  19. The Structure of Genetic Diversity in Eelgrass (Zostera marina L.) along the North Pacific and Bering Sea Coasts of Alaska

    PubMed Central

    Talbot, Sandra L.; Sage, George K; Rearick, Jolene R.; Fowler, Meg C.; Muñiz-Salazar, Raquel; Baibak, Bethany; Wyllie-Echeverria, Sandy; Cabello-Pasini, Alejandro; Ward, David H.

    2016-01-01

    Eelgrass (Zostera marina) populations occupying coastal waters of Alaska are separated by a peninsula and island archipelago into two Large Marine Ecosystems (LMEs). From populations in both LMEs, we characterize genetic diversity, population structure, and polarity in gene flow using nuclear microsatellite fragment and chloroplast and nuclear sequence data. An inverse relationship between genetic diversity and latitude was observed (heterozygosity: R2 = 0.738, P < 0.001; allelic richness: R2 = 0.327, P = 0.047), as was significant genetic partitioning across most sampling sites (θ = 0.302, P < 0.0001). Variance in allele frequency was significantly partitioned by region only in cases when a population geographically in the Gulf of Alaska LME (Kinzarof Lagoon) was instead included with populations in the Eastern Bering Sea LME (θp = 0.128–0.172; P < 0.003), suggesting gene flow between the two LMEs in this region. Gene flow among locales was rarely symmetrical, with notable exceptions generally following net coastal ocean current direction. Genetic data failed to support recent proposals that multiple Zostera species (i.e. Z. japonica and Z. angustifolia) are codistributed with Z. marina in Alaska. Comparative analyses also failed to support the hypothesis that eelgrass populations in the North Atlantic derived from eelgrass retained in northeastern Pacific Last Glacial Maximum refugia. These data suggest northeastern Pacific populations are derived from populations expanding northward from temperate populations following climate amelioration at the terminus of the last Pleistocene glaciation. PMID:27104836

  20. Cloning of TPS gene from eelgrass species Zostera marina and its functional identification by genetic transformation in rice.

    PubMed

    Zhao, Feng; Li, Qiuying; Weng, Manli; Wang, Xiuliang; Guo, Baotai; Wang, Li; Wang, Wei; Duan, Delin; Wang, Bin

    2013-12-01

    The full-length cDNA sequence (2613 bp) of the trehalose-6-phosphate synthase (TPS) gene of eelgrass Zostera marina (ZmTPS) was identified and cloned. Z. marina is a kind of seed-plant growing in sea water during its whole life history. The open reading frame (ORF) region of ZmTPS gene encodes a protein of 870 amino acid residues and a stop codon. The corresponding genomic DNA sequence is 3770 bp in length, which contains 3 exons and 2 introns. The ZmTPS gene was transformed into rice variety ZH11 via Agrobacterium-mediated transformation method. After antibiotic screening, molecular characterization, salt-tolerance and trehalose content determinations, two transgenic lines resistant to 150 mM NaCL solutions were screened. Our study results indicated that the ZmTPS gene was integrated into the genomic DNA of the two transgenic rice lines and could be expressed well. Moreover, the detection of the transformed ZmTPS gene in the progenies of the two transgenic lines was performed from T1 to T4 generations; and results suggested that the transformed ZmTPS gene can be transmitted from parent to the progeny in transgenic rice.

  1. Population-specificity of heat stress gene induction in northern and southern eelgrass Zostera marina populations under simulated global warming.

    PubMed

    Bergmann, Nina; Winters, Gidon; Rauch, Gisep; Eizaguirre, Christophe; Gu, Jenny; Nelle, Peter; Fricke, Birgit; Reusch, Thorsten B H

    2010-07-01

    Summer heat waves have already resulted in mortality of coastal communities, including ecologically important seagrass meadows. Gene expression studies from controlled experiments can provide important insight as to how species/genotypes react to extreme events that will increase under global warming. In a common stress garden, we exposed three populations of eelgrass, Zostera marina, to extreme sea surface temperatures, simulating the 2003-European heat wave. Populations came from locations widely differing in their thermal regime, two northern European locations [Ebeltoft (Kattegat), Doverodde (Limfjord, Baltic Sea)], and one southern population from Gabicce Mare (Adriatic Sea), allowing to test for population specificity in the response to a realistic heat stress event. Eelgrass survival and growth as well as the expression of 12 stress associated candidate genes were assessed during and after the heat wave. Contrary to expectations, all populations suffered equally from 3 weeks of heat stress in terms of shoot loss. In contrast, populations markedly differed in multivariate measures of gene expression. While the gene expression profiles converged to pre-stress values directly after the heat wave, stress correlated genes were upregulated again 4 weeks later, in line with the observed delay in shoot loss. Target genes had to be selected based on functional knowledge in terrestrial plants, nevertheless, 10/12 genes were induced relative to the control treatment at least once during the heat wave in the fully marine plant Z. marina. This study underlines the importance of realistic stress and recovery scenarios in studying the impact of predicted climate change.

  2. The Structure of Genetic Diversity in Eelgrass (Zostera marina L.) along the North Pacific and Bering Sea Coasts of Alaska.

    PubMed

    Talbot, Sandra L; Sage, George K; Rearick, Jolene R; Fowler, Meg C; Muñiz-Salazar, Raquel; Baibak, Bethany; Wyllie-Echeverria, Sandy; Cabello-Pasini, Alejandro; Ward, David H

    2016-01-01

    Eelgrass (Zostera marina) populations occupying coastal waters of Alaska are separated by a peninsula and island archipelago into two Large Marine Ecosystems (LMEs). From populations in both LMEs, we characterize genetic diversity, population structure, and polarity in gene flow using nuclear microsatellite fragment and chloroplast and nuclear sequence data. An inverse relationship between genetic diversity and latitude was observed (heterozygosity: R2 = 0.738, P < 0.001; allelic richness: R2 = 0.327, P = 0.047), as was significant genetic partitioning across most sampling sites (θ = 0.302, P < 0.0001). Variance in allele frequency was significantly partitioned by region only in cases when a population geographically in the Gulf of Alaska LME (Kinzarof Lagoon) was instead included with populations in the Eastern Bering Sea LME (θp = 0.128-0.172; P < 0.003), suggesting gene flow between the two LMEs in this region. Gene flow among locales was rarely symmetrical, with notable exceptions generally following net coastal ocean current direction. Genetic data failed to support recent proposals that multiple Zostera species (i.e. Z. japonica and Z. angustifolia) are codistributed with Z. marina in Alaska. Comparative analyses also failed to support the hypothesis that eelgrass populations in the North Atlantic derived from eelgrass retained in northeastern Pacific Last Glacial Maximum refugia. These data suggest northeastern Pacific populations are derived from populations expanding northward from temperate populations following climate amelioration at the terminus of the last Pleistocene glaciation.

  3. Effects of seed predators and light level on the distribution of Avicennia marina (Forsk.) Vierh. in tropical, tidal forests

    NASA Astrophysics Data System (ADS)

    Smith, Thomas J.

    1987-07-01

    Avicennia marina has an unusual distributional pattern across the intertidal region in mangrove forests of north-eastern Australia. It is often abundant in the low intertidal and high intertidal but is very rare in mid-intertidal areas. The influences of shade intolerance and seed predators on the distribution of Avicennia were investigated. Field observations of 391 light gaps indicated that while seedlings were equally abundant in gaps versus under the neighboring forest canopy, saplings were much more abundant in gaps. Subsequent field studies showed that seedlings survived and grew best in light gaps as opposed to under the forest canopy. Further field experiments revealed that 96·0±3·4% of the post-dispersal propagules of Avicennia are consumed by seed predators, primarily grapsid crabs. Predation on propagules was less in low and high intertidal regions where conspecific adults were common and was highest in the mid intertidal where Avicennia is rarest. Predator exclusion experiments indicated that Avicennia was capable of growing in mid-intertidal areas. It is concluded that the combination of shade intolerance and extensive predation on its' propagules effectively limits the distribution of Avicennia marina across the intertidal and may account for the dominance by members of the Rhizophoraceae in the mangrove forests of northern Australia.

  4. Micro-organic pollutants and biological response of mussels in marinas and ship building/breaking yards in Turkey.

    PubMed

    Okay, O S; Karacık, B; Güngördü, A; Ozmen, M; Yılmaz, A; Koyunbaba, N C; Yakan, S D; Korkmaz, V; Henkelmann, B; Schramm, K-W

    2014-10-15

    Concentrations of PAHs, PCBs and OCPs in sediments and mussels (caged and/or native) were determined at 16 stations in six major sites of coastal Turkey. The biological effects of pollution were evaluated using sediment toxicity tests and enzyme activity assays. EROD, PROD, GST, AChE, CaE, and GR activities were evaluated using the digestive glands of mussels. The total PAH concentrations in the sediments varied between nd and 79,674 ng g(-1) dw, while the total OCP concentrations were in the range of nd to 53.7 ng g(-1) dw. The total PAH concentrations in mussels varied between 22.3 and 37.4 ng g(-1) ww. The average concentrations of total PCBs in mussels were 2795 pg g(-1) ww in the shipyard, 797 pg g(-1) ww in Marina 2 and 53 pg g(-1) ww in Marina 1 stations. The results of whole-sediment toxicity tests showed a strong correlation between toxicity test results and pollutant concentrations. Selected cytosolic enzyme activities in digestive glands differed significantly depending on localities. These differences in enzyme activities were mainly related to the different pollutant levels of the sampling sites. The micro-organic contaminant profile patterns, toxicity tests and biomarker studies showed that shipyards and shipbreaking yards are the major potential sources of organic pollution in coastal areas.

  5. Liver histopathology in the cane toad, Rhinella marina (Amphibia: Bufonidae), induced by Ortleppascaris sp. larvae (Nematoda: Ascarididae).

    PubMed

    Silva, Jefferson P E; da Silva, Djane C B; Melo, Francisco T V; Giese, Elane G; Furtado, Adriano P; Santos, Jeannie N

    2013-04-01

    Exposure to parasites is considered to be an important factor in the development of many diseases and histopathologies which are the result of the parasite-host interaction. The present study evaluated the impact of natural infection by larvae of Ortleppascaris sp. (Nematoda: Ascaridida) in the liver of the cane toad Rhinella marina (Linnaeus, 1758). Larvae were encysted in nodules delimited by collagenous fibers and fibroblasts or freely within the hepatic parenchyma, provoking a clear response from the host. The histological examination of the liver revealed viable larvae in a number of different developmental stages, as well as cysts filled with amorphous material and cell residues and surrounded by dense fibrotic tissue. The infection of the liver by these larvae induces a significant increase in the area occupied by melanomacrophages and a reduction or deficit in the vascularization of the liver, hypertrophy of the hepatocytes, vacuolar bodies, and cytoplasmatic granules. Focal concentrations of inflammatory infiltrates were observed enclosing the unencapsulated early-stage larvae. These results indicate that infection by Ortleppascaris sp. induces severe physiological problems and histopathological lesions in the liver of R. marina .

  6. Characterization and expression analysis of three CBF/DREB1 transcriptional factor genes from mangrove Avicennia marina.

    PubMed

    Peng, Ya-Lan; Wang, You-Shao; Cheng, Hao; Sun, Cui-Ci; Wu, Peng; Wang, Li-Ying; Fei, Jiao

    2013-09-15

    Three CBF/DREB1 (C-repeat binding factor/dehydration responsive element-binding factor 1) homologues were isolated from mangrove Avicennia marina and designated AmCBF1, 2 and 3. Multiple sequence analysis showed that the three deduced proteins all contain an AP2 DNA-binding domain and two CBF signature sequences. According to the phylogenetic analysis, these proteins belong to the A-1 subgroup of the DREB subfamily. Expression analyses based on quantitative real-time PCR revealed that the AmCBF2 displayed relatively high expression under normal conditions, with the highest level in stems, while both AmCBF1 and 3 were weakly expressed without stress. The three genes also showed different responses to various environmental stimuli. The AmCBF2 was inducible by cold, drought, high salinity, heavy metals, as well as abscisic acid (ABA), and exhibited much stronger induction by cold, drought, Pb(2+) or Zn(2+) than by NaCl, ABA or Cd(2+). In contrast, both AmCBF1 and AmCBF3 displayed insignificant changes under these stimuli. These results indicate that the three AmCBF genes play different roles in A. marina and the AmCBF2 might be involved in the signaling pathway of cold, drought and heavy metal stress response.

  7. Sciscionella marina gen. nov., sp. nov., a marine actinomycete isolated from a sediment in the northern South China Sea.

    PubMed

    Tian, Xin-Peng; Zhi, Xiao-Yang; Qiu, Yun-Qi; Zhang, Yu-Qin; Tang, Shu-Kun; Xu, Li-Hua; Zhang, Si; Li, Wen-Jun

    2009-02-01

    The taxonomic position of an actinomycete, designated SCSIO 00231(T), isolated from a sediment sample collected from the northern South China Sea, was determined by using a polyphasic approach. The organism formed fragmented substrate hyphae and sparse aerial mycelium on modified ISP 2 medium. Phylogenetic analysis based on the 16S rRNA gene sequence showed that strain SCSIO 00231(T) fell into the family Pseudonocardiaceae, in which it formed a distinct lineage and was loosely associated with Thermocrispum municipale DSM 44069(T), with 93 % similarity. The other closest phylogenetic neighbours were Saccharopolyspora erythraea NRRL 2338(T) (92.6 % similarity) and Amycolatopsis sacchari DSM 44468(T) (93.1 % similarity). The isolate had cell-wall type IV (meso-diaminopimelic acid and whole-cell sugars arabinose, galactose and glucose) and phospholipid type III. The predominant menaquinone was MK-9(H(4)). The G+C content of the genomic DNA was 69 mol%. Based on these data, strain SCSIO 00231(T) can be readily distinguished from previously described organisms and represents a new genus within the family Pseudonocardiaceae. The name Sciscionella gen. nov. is proposed, with the novel species Sciscionella marina sp. nov. The type strain of Sciscionella marina is SCSIO 00231(T) (=KCTC 19433(T) =CCTCC AA208009(T)).

  8. Effect of lycopene from Chlorella marina on high cholesterol-induced oxidative damage and inflammation in rats.

    PubMed

    Renju, G L; Kurup, G Muraleedhara; Saritha Kumari, C H

    2014-02-01

    Even though the role of all-trans lycopene from tomato in controlling atherosclerosis was reported, but no report is available on the cis-isomer of lycopene obtained from an easily available source green algae Chlorella marina. So in this study, Sprague Dawley rats fed with high-cholesterol diet were given standard drug lovastatin; algal lycopene (AL) (cis/all-trans 40:60) and tomato all-trans lycopene (TL) and the following parameters were studied. Total cholesterol, low-density lipoprotein, triglycerides were decreased significantly and the high-density lipoprotein levels were increased on treatment with AL. The activities of antioxidant enzymes catalase, superoxide dismutase, glutathione peroxidase, and glutathione reductase were found to be increased, whereas thiobarbituric acid reactive substances levels were decreased in AL when compared to the drug and TL-treated rats. The activities of inflammatory marker enzymes like cyclooxygenase, 15-lipoxygenase in monocytes and myeloperoxidase, C-reactive protein and ceruloplasmin levels in serum were found to be decreased on treatment with AL. Histopathological studies revealed that lycopene from this alga could reduce fatty liver and aortic plaque when compared to the drug and TL. Algal lycopene showed very significant antioxidant and anti-inflammatory effect in high-cholesterol fed rats. Therefore, AL from C. marina would be recommended for the treatment of hyperlipidemia. PMID:23887896

  9. Recombinant production and characterization of a highly active alkaline phosphatase from marine bacterium Cobetia marina.

    PubMed

    Golotin, Vasily; Balabanova, Larissa; Likhatskaya, Galina; Rasskazov, Valery

    2015-04-01

    The psychrophilic marine bacterium, Cobetia marina, recovered from the mantle tissue of the marine mussel, Crenomytilus grayanus, which contained a gene encoding alkaline phosphatase (AP) with apparent biotechnology advantages. The enzyme was found to be more efficient than its counterparts and showed k cat value 10- to 100-fold higher than those of all known commercial APs. The enzyme did not require the presence of exogenous divalent cations and dimeric state of its molecule for activity. The recombinant enzyme (CmAP) production and purification were optimized with a final recovery of 2 mg of the homogenous protein from 1 L of the transgenic Escherichia coli Rosetta(DE3)/Pho40 cells culture. CmAP displayed a half-life of 16 min at 45 °C and 27 min at 40 °C in the presence of 2 mM EDTA, thus suggesting its relative thermostability in comparison with the known cold-adapted analogues. A high concentration of EDTA in the incubation mixture did not appreciably inhibit CmAP. The enzyme was stable in a wide range of pH (6.0-11.0). CmAP exhibited its highest activity at the reaction temperature of 40-50 °C and pH 9.5-10.3. The structural features of CmAP could be the reason for the increase in its stability and catalytic turnover. We have modeled the CmAP 3D structure on the base of the high-quality experimental structure of the close homologue Vibrio sp. AP (VAP) and mutated essential residues predicted to break Mg(2+) bonds in CmAP. It seems probable that the intrinsically tight binding of catalytic and structural metal ions together with the flexibility of intermolecular and intramolecular links in CmAP could be attributed to the adapted mutualistic lifestyle in oceanic waters. PMID:25260971

  10. Rhizosphere of Avicennia marina (Forsk.) Vierh. as a landmark for polythene degrading bacteria.

    PubMed

    Shahnawaz, Mohd; Sangale, Manisha K; Ade, Avinash B

    2016-07-01

    Due to high durability, cheap cost, and ease of manufacture, 311 million tons of plastic-based products are manufactured around the globe per annum. The slow/least rate of plastic degradation leads to generation of million tons of plastic waste per annum, which is of great environmental concern. Of the total plastic waste generated, polythene shared about 64 %. Various methods are available in the literature to tackle with the plastic waste, and biodegradation is considered as the most accepted, eco-friendly, and cost-effective method of polythene waste disposal. In the present study, an attempt has been made to isolate, screen, and characterize the most efficient polythene degrading bacteria by using rhizosphere soil of Avicennia marina as a landmark. From 12 localities along the west coast of India, a total of 123 bacterial isolates were recorded. Maximum percent weight loss (% WL; 21.87 ± 6.37 %) was recorded with VASB14 at pH 3.5 after 2 months of shaking at room temperature. Maximum percent weight gain (13.87 ± 3.6 %) was reported with MANGB5 at pH 7. Maximum percent loss in tensile strength (% loss in TS; 87.50 ± 4.8 %) was documented with VASB1 at pH 9.5. The results based on the % loss in TS were only reproducible. Further, the level of degradation was confirmed by scanning electron microscopic (SEM) and Fourier transform infrared spectroscopy (FTIR) analysis. In SEM analysis, scions/crakes were found on the surface of the degraded polythene, and mass of bacterial cell was also recorded on the weight-gained polythene strips. Maximum reduction in carbonyl index (4.14 %) was recorded in untreated polythene strip with Lysinibacillus fusiformis strain VASB14/WL. Based on 16S ribosomal RNA (rRNA) gene sequence homology, the most efficient polythene degrading bacteria were identified as L. fusiformis strainVASB14/WL and Bacillus cereus strain VASB1/TS. PMID:27072028

  11. In-situ Phytoremediation of PAH and PCB Contaminated Marine Sediments with Eelgrass (Zostera marina)

    SciTech Connect

    Huesemann, Michael H.; Hausmann, Tom S.; Fortman, Timothy J.; Thom, Ronald M.; Cullinan, Valerie I.

    2009-10-01

    In view of the fact that there are presently no cost-effective in-situ treatment technologies for contaminated sediments, a 60 week long phytoremediation feasibility study was conducted in seawater-supplied outdoor ponds to determine whether eelgrass (Zostera marina) is capable of removing polynuclear aromatic hydrocarbons (PAHs) and polychlorinated biphenyls (PCBs) from submerged marine sediments. It was determined that all PAHs and PCBs, independent of the number of aromatic rings and degree of chlorination, respectively, were removed to a much larger extent in planted sediments compared to unplanted controls. After 60 weeks of treatment, the concentration of total PAHs decreased by 73% in planted sediments but only 25% in unplanted controls. Similarly, total PCBs declined by 60% in the presence of plants while none were removed in the unplanted sediment. Overall, PAH and PCB biodegradation was greatest in the sediment layer that contained most of the eelgrass roots. Abiotic desorption tests conducted at week 32 confirmed that the phytoremediation process was not controlled by mass-transfer or bioavailability limitations since all PAHs and PCBs desorbed rapidly and to a large extent from the sediment. PAHs were detected in both roots and shoots, with root and shoot bioaccumulation factors for total PAHs amounting to approximately 3 and 1, respectively, after 60 weeks of phytoremediation treatment. Similarly, the root bioccumulation factor for total PCBs was around 4, while no PCBs were detected in the eelgrass leaves at the end of the experiment. The total mass fraction of PAHs and PCBs absorbed and translocated by plant biomass during the 60 week period was insignificant, amounting to less than 0.5% of the total mass of PAHs and PCBs which was initially present in the sediment. Finally, the number of total heterotrophic bacteria and hydrocarbon degraders was slightly but not statistically significantly greater in planted sediments than in unplanted controls

  12. Climate-linked mechanisms driving spatial and temporal variation in eelgrass (Zostera marina L.) growth and assemblage structure in Pacific Northwest estuaries, USA

    SciTech Connect

    Thom, Ronald M.; Southard, Susan L.; Borde, Amy B.

    2014-11-01

    Using laboratory experiments on temperature and leaf metabolism, and field data sets from Washington, between 1991 and 2013, we developed lines of evidence showing that variations in water temperature, mean sea level, and desiccation stress appear to drive spatial and temporal variations in eelgrass (Zostera marina).

  13. Has the rapidly expanding invasive dwarf eelgrass Zostera japonica in Yaquina estuary, Oregon impacted the distribution of native eelgrass Zostera marina – a critical intertidal habitat? - CERF

    EPA Science Inventory

    Native eelgrass, Zostera marina, occupies a significant portion of marine-dominated intertidal and near-subtidal sectors of many coastal estuaries. In recent decades an invasive congener, Z. japonica, has become established in many Pacific Northwest estuaries. We measured the h...

  14. MAPPING INTERTIDAL EELGRASS (ZOSTERA MARINA L.) IN THREE COASTAL ESTUARIES OF THE PACIFIC NORTHWEST USA USING FALSE-COLOUR NEAR-INFRARED AERIAL PHOTOGRAPHY

    EPA Science Inventory

    This study describes a hybrid technique of digitally classifying aerial photography used for mapping the intertidal habitat of eelgrass (Zostera marina L.) in Pacific Northwest USA estuaries. The large tidal range (2-3 m) in this region exposes most of this seagrass community at ...

  15. Comparison of non-indigenous dwarf eelgrass (Zostera japonica) and native eelgrass (Z. marina) distributions in a northeast Pacific estuary: 1997-2014

    EPA Science Inventory

    This study addressed the following question: In a coastal estuary of the northeastern Pacific Ocean with a relatively large areal extent of the native eelgrass Zostera marina, is an expanding distribution of the non-indigenous dwarf eelgrass Z. japonica accompanied by a measurab...

  16. Has the rapidly expanding invasive dwarf eelgrass Zostera japonica in Yaquina estuary, Oregon impacted the distribution of native eelgrass Zostera marina – a critical intertidal habitat?

    EPA Science Inventory

    Native eelgrass, Zostera marina, occupies a significant portion of marine-dominated intertidal and near-subtidal sectors of many coastal estuaries. In recent decades an invasive congener, Z. japonica, has become established in many Pacific Northwest estuaries. We measured the h...

  17. The filtration activity of a serpulid polychaete population ( Ficopomatus enigmaticus (Fauvel) and its effects on water quality in a coastal marina

    NASA Astrophysics Data System (ADS)

    Davies, B. R.; Stuart, V.; de Villiers, M.

    1989-12-01

    An estimate of the total standing stock of Ficopomatus enigmaticus (Fauvel) in the Marina da Gama, Zandvlei, near Cape Town was made, and some aspects of the animals' filter-feeding behaviour investigated. Working on values of 5·23 g dry mass of worm (excluding tube) m -2 on the submerged aquatic plant Potamogeton pectinatus L., plus 84·9 g m -2 on the canal walls, the total standing stock of the serpulid was estimated at 2·88±2·24 t (1·4 t on Potamogeton; 1·48 t on canal walls). At the average particle concentrations of Marina water of 5·27 mg l -1, the clearnace rate of F. enigmaticus was 8·59 ml mg -1 worm h -1, resulting in an ingestion rate of 45·27 mg mg -1 worm h -1 of particles in the size range 2-16 μm. Clearance and ingestion rates both increased in direct proportion to food concentration. Using estimates of total standing stocks within the Marina, the F. enigmaticus population clears 2·47 × 10 7 l of water h -1 and consumes 1·3 × 10 8 mg of particles h -1 in the 2-16 μm size range. Thus, the entire volume of the Marina will be filtered in 26·1 h through the activities of this animal alone, illustrating its importance for the maintenance of water quality within this moderately polluted system.

  18. ABUNDANCE OF SEAGRASS (ZOSTERA MARINA L.) AND MACROALGAE IN RELATION TO THE SALINITY-TEMPERATURE GRADIENT IN YAQUINA BAY, OREGON, USA

    EPA Science Inventory

    The distribution and abundance of the seagrass, Zostera marina, and the associated macroalgae are described for Yaquina Bay, Oregon, U.S.A. Possible relationships between plant abundance and physical-chemical characteristics of the water column were also explored. Study sites w...

  19. DESICCATION IS A LIMITING FACTOR FOR EELGRASS (ZOSTERA MARINA L.) DISTRIBUTION IN THE INTERTIDAL ZONE OF A NORTHEASTERN P{ACIFIC (USA) ESTUARY

    EPA Science Inventory

    Intertidal irradiance, temperature, and aerial exposure were measured for two years in intertidal Zostera marina beds located in Yaquina Bay (Newport, OR, USA). These physical data were correlated with plant growth and other metrics measured at intervals during the study. Pho...

  20. Effect of multiple stressors on eelgrass Zostera marina L. from the Pacific Northwest, USA: Manipulation of temperature and nutrients - November 2011

    EPA Science Inventory

    Estuarine eelgrass beds in the Pacific Northwest (PNW) are being exposed to a range of natural and anthropogenic stressors and climate change. The purpose of the current study was to examine the effects of temperature and nutrient quantity on Z. marina growth and physiology. Ma...

  1. Quantitative PCR reveals strong spatial and temporal variation of the wasting disease pathogen, Labyrinthula zosterae in northern European eelgrass (Zostera marina) beds.

    PubMed

    Bockelmann, Anna-Christina; Tams, Verena; Ploog, Jana; Schubert, Philipp R; Reusch, Thorsten B H

    2013-01-01

    Seagrass beds are the foundation species of functionally important coastal ecosystems worldwide. The world's largest losses of the widespread seagrass Zostera marina (eelgrass) have been reported as a consequence of wasting disease, an infection with the endophytic protist Labyrinthula zosterae. During one of the most extended epidemics in the marine realm, ∼90% of East and Western Atlantic eelgrass beds died-off between 1932 and 1934. Today, small outbreaks continue to be reported, but the current extent of L. zosterae in European meadows is completely unknown. In this study we quantify the abundance and prevalence of the wasting disease pathogen among 19 Z. marina populations in northern European coastal waters, using quantitative PCR (QPCR) with primers targeting a species specific portion of the internally transcribed spacer (ITS1) of L. zosterae. Spatially, we found marked variation among sites with abundances varying between 0 and 126 cells mg(-1) Z. marina dry weight (mean: 5.7 L. zosterae cells mg(-1) Z. marina dry weight ±1.9 SE) and prevalences ranged from 0-88.9%. Temporarily, abundances varied between 0 and 271 cells mg(-1) Z. marina dry weight (mean: 8.5±2.6 SE), while prevalences ranged from zero in winter and early spring to 96% in summer. Field concentrations accessed via bulk DNA extraction and subsequent QPCR correlated well with prevalence data estimated via isolation and cultivation from live plant tissue. L. zosterae was not only detectable in black lesions, a sign of Labyrinthula-induced necrosis, but also occurred in green, apparently healthy tissue. We conclude that L. zosterae infection is common (84% infected populations) in (northern) European eelgrass populations with highest abundances during the summer months. In the light of global climate change and increasing rate of marine diseases our data provide a baseline for further studies on the causes of pathogenic outbreaks of L. zosterae.

  2. Low absorption state of phycocyanin from Acaryochloris marina antenna system: On the interplay between ionic strength and excitonic coupling

    NASA Astrophysics Data System (ADS)

    Nganou, Collins

    2013-07-01

    This paper studies the excitonic factor in the excited state energy transfer of phycobilisome (PBS) by using a polarized time-resolved pump-probe and by changing the ionic strength of the cofactors' medium in the PBS of Acaryochloris marina (A. marina). As a result, the interplay between the surrounding medium and the closely excited adjacent cofactors is shown to be a negligible factor of the excitonic decay kinetics at 618 nm of the phycocyanin (PC), while it appears as a driving factor of an increase in excitonic delocalization at 630 nm. The obtained anisotropy values are consistent with the contribution of ionic strength in the excitonic mechanism in PBS. These values were 0.38 in high ionic strength and 0.4 in low ionic strength at 618 nm, and 0.52 in high ionic strength and 0.4 in low ionic strength at 630-635 nm. The anisotropy value of 0.52 in high phosphate is similar at 630 nm and 635 nm, which is consistent with an excitonic delocalization band at 635 nm. The 635 nm band is suggested to show the true low energy level of PC in A. marina PBS. The anisotropy decay kinetic at 630 nm suggests that the excited state population of PC is not all equilibrated in 3 ps because of the existence of the 10 ps decay kinetic component. The presence of the slow kinetic decay component in high, and low ionic strength, is consistent with a 10 and 14 ps energy transfer pathway, while the 450 fs kinetic decay component is consistent with the presence of an additional excitation energy transfer pathway between adjacent α84 and β84. Furthermore, the 450 fs decay kinetic is suggested to be trapped in the trimer, while the 400 fs decay kinetic rules out an excitonic flow from low energy level PC to allophycoyanin. This excitonic flow may occur between β84 in adjacent trimers, towards the low energy state of the PBS rod.

  3. On observing high frequency dynamics in coastal regions: latest insights of the MARINA project.

    NASA Astrophysics Data System (ADS)

    Roblou, Laurent; Delebecque, Caroline; Vignudelli, Stefano; Jerome, Bouffard; Cipollini, Paolo; Morrow, Rosemary; Birol, Florence

    (ALtimeter-Based Investigations in COrsica, Capraia and Contiguous Areas) project and this leads to the X-TRACK software. Numerous studies have since illustrated the benefits of such software to the overall improvement of al-timeter product quality in the coastal systems. A key-task of MARgin Integrated Approach (MARINA) project funded by the French Space Agency CNES is to extend the potential of the software and its products to the high rate measurements provided in the altimetry prod-ucts. In this paper, high resolution, optimized coastal altimetry products from the X-TRACK processor and other datasets coming from PISTACH and COASTALT projects, respectively funded by CNES and European Space Agency ESA, have been compared to in situ observa-tions in the Straits of Bonifaccio, a pilot site in the area of Corsica and Sardinia islands in the NW Mediterranean Sea. The results of this study are illustrated, highlighting the potential and limitations of such data sets for monitoring coastal dynamics and toward integration into coastal hydrodynamical models.

  4. Sinkhole Geohazard In Deformed Sulphates at Marina di Lesina (Gargano Promontory, Italy): a Combination of Anthropogenic, Lithologic, and Structural Causes

    NASA Astrophysics Data System (ADS)

    Gabbianelli, G.; Antonellini, M.; Mancini, F.; Stecchi, F.; Castellarin, A.

    2009-04-01

    Sinkhole development and collapse of underground caves within a gypsum substrate is focused in proximity to the beach resort of Marina di Lesina on the Adriatic coast of Southern Italy. This situation constitutes a serious geohazard for the local community and a threat to the development of the tourist activity. Fast sinkhole development has been reported in the last two decades both in terms of newly formed cavities and of widening of already existing ones. Morphologically, the apparent sinkholes are small (from a few meters to a few tens of meters) and restricted to the area of the harbour canal. The substratum of the area consists of evaporite and carbonate platfom sediments of the Apulian margin, Triassic to Cretaceous in age, above which there is a thin layer (2 to 4 m) of Quaternary fine to medium sand deposits. Sheared marls, sub-volcanic igneous rocks, and bituminous limestone connected to a fault scarp, as well as small salt diapirs have been observed in proximity to the city. Below the urban area of Marina di Lesina, the platform sediments consist of fractured, sheared, and karstified sulfates (Burano Formation). Given solubility larger than that of carbonate rock, sulfates is a focus for the dissolution process. From a structural point of view, the Marina di Lesina area is probably in a push-up step between two secondary segments of East-West trending left lateral strike-slip faults with the same trend of the Mattinata fault system. The presence of a push-up structure is confirmed by the existing geological maps, the morphological, and the altimetry data available for the area that point out the presence of arcuate relief structures next to the Pietre Nere (Black Rocks) Head. These high relief areas are probable NW-SE oriented high angle reverse faults in the compressional quadrant of the southernmost strike-slip fault segment. The area within a push-up step is undergoing an intense compressive stress that results in strong pressure solution phenomena

  5. Dependence of eelgrass (Zostera marina) light requirements on sediment organic matter in Massachusetts coastal bays: implications for remediation and restoration.

    PubMed

    Kenworthy, W J; Gallegos, C L; Costello, Charles; Field, Donald; di Carlo, Giuseppe

    2014-06-30

    Using a calibrated bio-optical model we determined that the optical water quality conditions in several nitrogen-impaired embayments and in one unimpaired system were within the range of values known to support eelgrass growth. We also used the model to identify a range of light requirements for eelgrass (Zostera marina). Higher eelgrass light requirements, expressed as a percentage of surface-incident irradiance, corresponded with higher sediment organic matter content. These results corroborated findings by previous studies which indicate a generalized relationship: seagrasses growing in turbid conditions with poorer water and sediment quality have higher light requirements than those growing in less degraded conditions. The mechanistic reason for the variation in light requirements is still not completely explained and cannot be attributed to a single independent variable. Varying light requirement have important implications for eelgrass protection and should be considered when setting restoration targets for eelgrass in water quality and nitrogen remediation programs.

  6. Consumption of eelgrass (Zostera marina L.) by the isopod idotea chelipes (pallas) in lake Grevelingen, after the growing season

    NASA Astrophysics Data System (ADS)

    Groenendijk, A. M.

    Autumn and winter consumption of eelgrass ( Zostera marina L.) by the isopod Idotea chelipes (Pallas) was calculated by means of estimating biomass of both Idotea and eelgrass in the field, and consumption experiments in the laboratory. During the research period, September 1978 to March 1979, Idotea was found to be most abundant (in terms of biomass) invertebrate species in the eelgrass beds of Lake Grevelingen. Calculations show that Idotea can only play a minor role in the breakdown of eelgrass after the growing season: only between 2.9 and 5.8% (maximally) of the standing crop of eelgrass at the 3 permanent plots was consumed by this invertebrate. The fast decline of the standing eelgrass crop after the growing season in mainly due to transport of large leaf fragments (>10 cm) from the eelgrass beds by wind and wave action.

  7. Isotopic signatures of eelgrass (Zostera marina L.) as bioindicator of anthropogenic nutrient input in the western Baltic Sea.

    PubMed

    Schubert, Philipp R; Karez, Rolf; Reusch, Thorsten B H; Dierking, Jan

    2013-07-15

    Eutrophication is a global environmental problem. Better management of this threat requires more accurate assessments of anthropogenic nitrogen (N) inputs to coastal systems than can be obtained with traditional measures. Recently, primary producer N isotopic signatures have emerged as useful proxy of such inputs. Here, we demonstrated for the first time the applicability of this method using the widespread eelgrass (Zostera marina) in the highly eutrophic Baltic Sea. Spatial availability of sewage N across a bay with one major sewage outflow predicted by eelgrass δ(15)N was high near and downstream of the outflow compared to upstream, but returned to upstream levels within 4 km downstream from the outfall. General conclusions were corroborated by traditional eutrophication measures, but in contrast to these measures were fully quantitative. Eelgrass N isotope ratios therefore show high potential for coastal screens of eutrophication in the Baltic Sea, and in other areas with eelgrass meadows.

  8. Molecular mechanisms that underlie the sexual stimulant actions of Avicennia marina (Forssk.) Vierh. and Crocus sativus L.

    PubMed

    Al-Rehaily, Adnan Jathlan; Alhowiriny, Tawfeq Abdullah; El-Tahir, Kamal Eh; Al-Taweel, Areej Mohammad; Perveen, Shagufta

    2015-01-01

    The effects of extracts and sub-fractions of Avicennia marina, Crocus sativus and sildenafil on the sexual behavior of male rats and their effects on the intracavernosal pressure (I.CV), intracavernosal cyclic GMP and dihydrotestosterone plasma level were examined. The sexual behavior was followed for four hours using infra-red video cameras to quantify the effects on various male sexual behaviors. The results revealed that the active sub-fraction in case of A. marina was the hexane fraction of the chloroform extracts (C/H) whereas that of C. sativus was the hexane fraction of the alcoholic extract (A/H). (C/H), (A/H) and sildenafil significantly increased the total sexual stimulation index from 53.8±2.7 (control) to 406±7.8, 225±4 and 401±30.1, respectively (P<0.001, N=6). They significantly increased the index of successful mounting and ejaculation from 2.6±0.5 (control) to 40±2.7, 21±2.3 and 18±1.7, respectively (P<0.01, N=6). They significantly increased the cyclic GMP level from 0.94±0.07 (control) to 3.1±0.13, 1.59±0.11 and 3.66±0.19 ng/mg wet tissue, respectively (P<0.05, N=7). They did not affect dihydrotestosterone plasma level. (C/H), (A/H) and sildenafil increased the (I.CV) pressure by 4.8±0.3, 1.4±0.8 and 4.2±0.9 mmHg. The (C/H) seemed to be more active than sildenafil and twice active than (A/H). Both extracts and sildenafil acted via an increase in cyclic GMP.

  9. A combination of dynamic light scattering and polarized resonance Raman scattering applied in the study of Arenicola Marina extracellular hemoglobin.

    PubMed

    Jernshøj, K D; Hassing, S; Olsen, L F

    2013-08-14

    Arenicola Marina extracellular hemoglobin (Hbl Hb) is considered to be a promising candidate as a blood substitute. To entangle some of the properties of extracellular giant hexagonal bilayer hemoglobin (Hbl Hb) of Arenicola Marina, we combined polarized resonance Raman scattering (532 nm excitation) with dynamic light scattering (DLS) (632.8 nm). An analysis of the depolarization ratio of selected a(2g) skeletal modes of the heme in native Hbl Hb and porcine Hb, shows that the distortion of the heme group away from its ideal fourfold symmetry is much smaller for heme groups bound in the Hbl Hb than for heme groups bound in porcine Hb. Using DLS, the average hydrodynamic diameter () of Hbl Hb was measured at pH = 5, 7, 8, 9, and 10. At pH = 5 to 7, the Hbl Hb was found in its native form with equal to 24.2 nm, while at pH = 8 and 9, a dissociation process starts to take place resulting in = 9 nm. At pH = 10, only large aggregates of fragmented Hbl Hb with larger than 1000 nm was detected, however, a comparison of the DLS results with the polarized resonance Raman scattering (RRS) revealed that the coupling between the fragments did not involve direct interaction between the heme groups, but also that the local heme environment seems to be comparable in the aggregates and in the native Hbl Hb. By comparing the unpolarized RRS results obtained for erythrocytes (RBC) with those for Hbl Hb, led us to the important conclusion that Hbl Hb is much easier photolyzed than porcine RBC.

  10. Diel and seasonal variation of a molluscan taxocoenosis associated with a Zostera marina bed in southern Spain (Alboran Sea)

    NASA Astrophysics Data System (ADS)

    Rueda, Jose L.; Urra, Javier; Salas, Carmen

    2008-09-01

    The diel and seasonal variation of molluscs living in a Zostera marina bed (12-14 m depth) from southern Spain have been studied for one year using a small Agassiz trawl for collecting the samples (222 m2). The frequent and dominant species were very similar in both diurnal and nocturnal samples, including mainly gastropods such as Jujubinus striatus, Nassarius pygmaeus, Mitrella minor, Calliostoma planatum, Rissoa membranacea or Smaragdia viridis. Nevertheless, a significant increase of abundance of scavengers (e.g. Nassarius spp.) and carnivores (e.g. cephalopods) was registered in nocturnal samples. The abundance was maximal in spring and summer in diurnal and nocturnal samples and also in autumn for nocturnal ones, displaying significantly higher values in nocturnal samples. The species richness, diversity and evenness displayed a similar seasonal trend for diurnal and nocturnal samples, with maximum values during summer months. Monthly variation of the molluscan composition (species presence-absence data) was more acute than diel variation, according to the Cluster, MDS and ANOSIM results. Nevertheless, both monthly and diel changes in the structure (species abundance data) of the molluscan taxocoenosis were important throughout the year. Diel changes in the structure of the molluscan fauna are related to an increase of abundance of some species at nighttime due to vertical movements from the sediment to the shoots or along them (e.g. J. striatus, Nassarius spp.) or due to horizontal movements from adjacent habitats (e.g. cephalopods). Nevertheless, some species such as Rissoa spp. or Bittium spp. stay on the leaves of Z. marina during day as well as nighttime.

  11. Patterns of Genetic Variability in Island Populations of the Cane Toad (Rhinella marina) from the Mouth of the Amazon.

    PubMed

    Bessa-Silva, Adam Rick; Vallinoto, Marcelo; Sodré, Davidson; da Cunha, Divino Bruno; Hadad, Dante; Asp, Nils Edvin; Sampaio, Iracilda; Schneider, Horacio; Sequeira, Fernando

    2016-01-01

    The Amazonian coast has several unique geological characteristics resulting from the interaction between drainage pattern of the Amazon River and the Atlantic Ocean. It is one of the most extensive and sedimentologically dynamic regions of the world, with a large number of continental islands mostly formed less than 10,000 years ago. The natural distribution of the cane toad (Rhinella marina), one of the world's most successful invasive species, in this complex Amazonian system provides an intriguing model for the investigation of the effects of isolation or the combined effects of isolation and habitat dynamic changes on patterns of genetic variability and population differentiation. We used nine fast-evolving microsatellite loci to contrast patterns of genetic variability in six coastal (three mainlands and three islands) populations of the cane toad near the mouth of the Amazon River. Results from Bayesian multilocus clustering approach and Discriminant Analyses of Principal Component were congruent in showing that each island population was genetically differentiated from the mainland populations. All FST values obtained from all pairwise comparisons were significant, ranging from 0.048 to 0.186. Estimates of both recent and historical gene flow were not significantly different from zero across all population pairs, except the two mainland populations inhabiting continuous habitats. Patterns of population differentiation, with a high level of population substructure and absence/restricted gene flow, suggested that island populations of R. marina are likely isolated since the Holocene sea-level rise. However, considering the similar levels of genetic variability found in both island and mainland populations, it is reliable to assume that they were also isolated for longer periods. Given the genetic uniqueness of each cane toad population, together with the high natural vulnerability of the coastal regions and intense human pressures, we suggest that these

  12. Resolving the spatial variability of sediment geochemistry within a seagrass (Zostera marina) meadow in the coastal bays of Virginia

    NASA Astrophysics Data System (ADS)

    Egge, N. E.; Macko, S. A.; O'connell, M. T.

    2013-12-01

    The environmental degradation of the areas of coastal Chesapeake Bay has been linked with explosive urbanization associated with human population growth and dramatic increases in agricultural activities. Possible impacts of these have been associated with diminishing seagrass (Zostera marina) coverage. Numerous efforts have been made to restore seagrass meadows. As a result of large-scale, seed-based restorations in South Bay (2001) and Hog Island Bay (2007), Z. marina has come to dominate portions of these bays. In this study, a spatially random sampling pattern was used to assess the frequency at which a variety of geochemical characteristics within the South Bay study area were correlated. Initial sampling is within a hectare window; cores were collected in a plot of samples simulated as a homogeneous Poisson distribution. Stable isotope and geochemical proxies are used to suggest the source of organic material within the coastal bays. Carbon and nitrogen isotope analyses were conducted on freeze-dried and acidified samples; sediments dominated by seagrass contain organic matter more enriched in 13C relative to autochthonous algal and planktonic marine materials. These data have been used to establish the spatial autocorrelation of sediment geochemistry for the surface, as well as deeper sediments. After the initial geostatistical parameter estimation, a random systematic grid pattern has been applied that satisfies assumptions of non-preferential design by randomly locating sampling points within the grid space. The systematic grid thus allows for the representation of the plot as a whole, as well as evaluation of spatial trends within the data. Fitting of geostatistical models will be presented using both conventional and Bayesian Kriging models. Results from this study may be able to be used to evaluate potential for carbon sequestration in these system as well as guide future restoration projects.

  13. The MARINA Risk Assessment Strategy: A Flexible Strategy for Efficient Information Collection and Risk Assessment of Nanomaterials.

    PubMed

    Bos, Peter M J; Gottardo, Stefania; Scott-Fordsmand, Janeck J; van Tongeren, Martie; Semenzin, Elena; Fernandes, Teresa F; Hristozov, Danail; Hund-Rinke, Kerstin; Hunt, Neil; Irfan, Muhammad-Adeel; Landsiedel, Robert; Peijnenburg, Willie J G M; Sánchez Jiménez, Araceli; van Kesteren, Petra C E; Oomen, Agnes G

    2015-11-27

    An engineered nanomaterial (ENM) may actually consist of a population of primary particles, aggregates and agglomerates of various sizes. Furthermore, their physico-chemical characteristics may change during the various life-cycle stages. It will probably not be feasible to test all varieties of all ENMs for possible health and environmental risks. There is therefore a need to further develop the approaches for risk assessment of ENMs. Within the EU FP7 project Managing Risks of Nanoparticles (MARINA) a two-phase risk assessment strategy has been developed. In Phase 1 (Problem framing) a base set of information is considered, relevant exposure scenarios (RESs) are identified and the scope for Phase 2 (Risk assessment) is established. The relevance of an RES is indicated by information on exposure, fate/kinetics and/or hazard; these three domains are included as separate pillars that contain specific tools. Phase 2 consists of an iterative process of risk characterization, identification of data needs and integrated collection and evaluation of data on the three domains, until sufficient information is obtained to conclude on possible risks in a RES. Only data are generated that are considered to be needed for the purpose of risk assessment. A fourth pillar, risk characterization, is defined and it contains risk assessment tools. This strategy describes a flexible and efficient approach for data collection and risk assessment which is essential to ensure safety of ENMs. Further developments are needed to provide guidance and make the MARINA Risk Assessment Strategy operational. Case studies will be needed to refine the strategy.

  14. A combination of dynamic light scattering and polarized resonance Raman scattering applied in the study of Arenicola Marina extracellular hemoglobin

    NASA Astrophysics Data System (ADS)

    Jernshøj, K. D.; Hassing, S.; Olsen, L. F.

    2013-08-01

    Arenicola Marina extracellular hemoglobin (Hbl Hb) is considered to be a promising candidate as a blood substitute. To entangle some of the properties of extracellular giant hexagonal bilayer hemoglobin (Hbl Hb) of Arenicola Marina, we combined polarized resonance Raman scattering (532 nm excitation) with dynamic light scattering (DLS) (632.8 nm). An analysis of the depolarization ratio of selected a2g skeletal modes of the heme in native Hbl Hb and porcine Hb, shows that the distortion of the heme group away from its ideal fourfold symmetry is much smaller for heme groups bound in the Hbl Hb than for heme groups bound in porcine Hb. Using DLS, the average hydrodynamic diameter (⟨dh⟩) of Hbl Hb was measured at pH = 5, 7, 8, 9, and 10. At pH = 5 to 7, the Hbl Hb was found in its native form with ⟨dh⟩ equal to 24.2 nm, while at pH = 8 and 9, a dissociation process starts to take place resulting in ⟨dh⟩ = 9 nm. At pH = 10, only large aggregates of fragmented Hbl Hb with ⟨dh⟩ larger than 1000 nm was detected, however, a comparison of the DLS results with the polarized resonance Raman scattering (RRS) revealed that the coupling between the fragments did not involve direct interaction between the heme groups, but also that the local heme environment seems to be comparable in the aggregates and in the native Hbl Hb. By comparing the unpolarized RRS results obtained for erythrocytes (RBC) with those for Hbl Hb, led us to the important conclusion that Hbl Hb is much easier photolyzed than porcine RBC.

  15. Aerobic scope and cardiovascular oxygen transport is not compromised at high temperatures in the toad Rhinella marina.

    PubMed

    Overgaard, Johannes; Andersen, Jonas L; Findsen, Anders; Pedersen, Pil B M; Hansen, Kasper; Ozolina, Karlina; Wang, Tobias

    2012-10-15

    Numerous recent studies convincingly correlate the upper thermal tolerance limit of aquatic ectothermic animals to reduced aerobic scope, and ascribe the decline in aerobic scope to failure of the cardiovascular system at high temperatures. In the present study we investigate whether this 'aerobic scope model' applies to an air-breathing and semi-terrestrial vertebrate Rhinella marina (formerly Bufo marinus). To quantify aerobic scope, we measured resting and maximal rate of oxygen consumption at temperatures ranging from 10 to 40°C. To include potential effects of acclimation, three groups of toads were acclimated chronically at 20, 25 and 30°C, respectively. The absolute difference between resting and maximal rate of oxygen consumption increased progressively with temperature and there was no significant decrease in aerobic scope, even at temperature immediately below the lethal limit (41-42°C). Haematological and cardiorespiratory variables were measured at rest and immediately after maximal activity at benign (30°C) and critically high (40°C) temperatures. Within this temperature interval, both resting and active heart rate increased, and there was no indication of respiratory failure, judged from high arterial oxygen saturation, P(O2) and [Hb(O2)]. With the exception of elevated resting metabolic rate for cold-acclimated toads, we found few differences in the thermal responses between acclimation groups with regard to the cardiometabolic parameters. In conclusion, we found no evidence for temperature-induced cardiorespiratory failure in R. marina, indicating that maintenance of aerobic scope and oxygen transport is unrelated to the upper thermal limit of this air-breathing semi-terrestrial vertebrate.

  16. Patterns of Genetic Variability in Island Populations of the Cane Toad (Rhinella marina) from the Mouth of the Amazon.

    PubMed

    Bessa-Silva, Adam Rick; Vallinoto, Marcelo; Sodré, Davidson; da Cunha, Divino Bruno; Hadad, Dante; Asp, Nils Edvin; Sampaio, Iracilda; Schneider, Horacio; Sequeira, Fernando

    2016-01-01

    The Amazonian coast has several unique geological characteristics resulting from the interaction between drainage pattern of the Amazon River and the Atlantic Ocean. It is one of the most extensive and sedimentologically dynamic regions of the world, with a large number of continental islands mostly formed less than 10,000 years ago. The natural distribution of the cane toad (Rhinella marina), one of the world's most successful invasive species, in this complex Amazonian system provides an intriguing model for the investigation of the effects of isolation or the combined effects of isolation and habitat dynamic changes on patterns of genetic variability and population differentiation. We used nine fast-evolving microsatellite loci to contrast patterns of genetic variability in six coastal (three mainlands and three islands) populations of the cane toad near the mouth of the Amazon River. Results from Bayesian multilocus clustering approach and Discriminant Analyses of Principal Component were congruent in showing that each island population was genetically differentiated from the mainland populations. All FST values obtained from all pairwise comparisons were significant, ranging from 0.048 to 0.186. Estimates of both recent and historical gene flow were not significantly different from zero across all population pairs, except the two mainland populations inhabiting continuous habitats. Patterns of population differentiation, with a high level of population substructure and absence/restricted gene flow, suggested that island populations of R. marina are likely isolated since the Holocene sea-level rise. However, considering the similar levels of genetic variability found in both island and mainland populations, it is reliable to assume that they were also isolated for longer periods. Given the genetic uniqueness of each cane toad population, together with the high natural vulnerability of the coastal regions and intense human pressures, we suggest that these

  17. Patterns of Genetic Variability in Island Populations of the Cane Toad (Rhinella marina) from the Mouth of the Amazon

    PubMed Central

    Bessa-Silva, Adam Rick; Vallinoto, Marcelo; Sodré, Davidson; da Cunha, Divino Bruno; Hadad, Dante; Asp, Nils Edvin; Sampaio, Iracilda; Schneider, Horacio; Sequeira, Fernando

    2016-01-01

    The Amazonian coast has several unique geological characteristics resulting from the interaction between drainage pattern of the Amazon River and the Atlantic Ocean. It is one of the most extensive and sedimentologically dynamic regions of the world, with a large number of continental islands mostly formed less than 10,000 years ago. The natural distribution of the cane toad (Rhinella marina), one of the world’s most successful invasive species, in this complex Amazonian system provides an intriguing model for the investigation of the effects of isolation or the combined effects of isolation and habitat dynamic changes on patterns of genetic variability and population differentiation. We used nine fast-evolving microsatellite loci to contrast patterns of genetic variability in six coastal (three mainlands and three islands) populations of the cane toad near the mouth of the Amazon River. Results from Bayesian multilocus clustering approach and Discriminant Analyses of Principal Component were congruent in showing that each island population was genetically differentiated from the mainland populations. All FST values obtained from all pairwise comparisons were significant, ranging from 0.048 to 0.186. Estimates of both recent and historical gene flow were not significantly different from zero across all population pairs, except the two mainland populations inhabiting continuous habitats. Patterns of population differentiation, with a high level of population substructure and absence/restricted gene flow, suggested that island populations of R. marina are likely isolated since the Holocene sea-level rise. However, considering the similar levels of genetic variability found in both island and mainland populations, it is reliable to assume that they were also isolated for longer periods. Given the genetic uniqueness of each cane toad population, together with the high natural vulnerability of the coastal regions and intense human pressures, we suggest that these

  18. Anti-inflammatory activity of lycopene isolated from Chlorella marina on type II collagen induced arthritis in Sprague Dawley rats.

    PubMed

    Renju, G L; Muraleedhara Kurup, G; Saritha Kumari, C H

    2013-04-01

    The role of commercially available lycopene (all-trans) from tomato in controlling arthritis has been reported. Even though many reports are available that the cis form of lycopene is more biologically active, no report seems to be available on lycopene (cis and trans) isolated from an easily available and culturable sources. In the present study, the anti-arthritic effect of lycopene (cis and trans) from the algae Chlorella marina (AL) has been compared with lycopene (all-trans) from tomato (TL) and indomethacin (Indo). Arthritis (CIA) was developed in male Sprague dawley rats by collagen and the following parameters were studied. The activities of inflammatory marker enzymes like cyclooxygenase (COX), lipoxygenase (LOX) and myeloperoxidase (MPO) were found to be decreased on treatment with AL when compared to TL and Indo. Changes in Erythrocyte sedimentation rate (ESR), white blood cell (WBC) count, red blood cells (RBC) count, hemoglobin (Hb), C-reactive protein (CRP), rheumatoid factor (RF), and ceruloplasmin levels observed in the blood of arthritic animals were brought back to normal by AL when compared to TL and Indo. Histopathology of paw and joint tissues showed marked reduction in edema on supplementation of AL. Thus these results indicate the potential beneficiary effect of algal lycopene on collagen induced arthritis in rats when compared to TL and even to the commonly used anti-inflammatory drug indomethacin. Therefore lycopene from C. marina would be recommended as a better natural source with increased activity and without side effects in the treatment of anti-inflammatory diseases. PMID:23237458

  19. Repeated rapid assessment surveys reveal contrasting trends in occupancy of marinas by non-indigenous species on opposite sides of the western English Channel.

    PubMed

    Bishop, John D D; Wood, Christine A; Lévêque, Laurent; Yunnie, Anna L E; Viard, Frédérique

    2015-06-30

    Rapid assessment surveys of non-indigenous species (NIS) of sessile invertebrates were made at seven marinas in NW France and 10 marinas in SW England in 2010, and repeated in 2013. Fourteen NIS were recorded, 12 of which were seen on both coasts. Site occupancy differed between the opposite sides of the western English Channel. In Brittany, most species occurred at most sites in both 2010 and 2013. In 2010, site occupancy in Devon & Cornwall was distinctly lower; by 2013, the difference compared to Brittany had narrowed considerably, largely because of rapid colonisation of additional sites by species that were infrequent in 2010. Three more of the recent NIS are present in Devon & Cornwall but have still not become widespread. It is concluded that the recently introduced fouling animals studied here are longer established in NW France than in SW England, and have probably spread northwards across the Channel.

  20. Metabolic engineering of the Chl d-dominated cyanobacterium Acaryochloris marina: production of a novel Chl species by the introduction of the chlorophyllide a oxygenase gene.

    PubMed

    Tsuchiya, Tohru; Mizoguchi, Tadashi; Akimoto, Seiji; Tomo, Tatsuya; Tamiaki, Hitoshi; Mimuro, Mamoru

    2012-03-01

    In oxygenic photosynthetic organisms, the properties of photosynthetic reaction systems primarily depend on the Chl species used. Acquisition of new Chl species with unique optical properties may have enabled photosynthetic organisms to adapt to various light environments. The artificial production of a new Chl species in an existing photosynthetic organism by metabolic engineering provides a model system to investigate how an organism responds to a newly acquired pigment. In the current study, we established a transformation system for a Chl d-dominated cyanobacterium, Acaryochloris marina, for the first time. The expression vector (constructed from a broad-host-range plasmid) was introduced into A. marina by conjugal gene transfer. The introduction of a gene for chlorophyllide a oxygenase, which is responsible for Chl b biosynthesis, into A. marina resulted in a transformant that synthesized a novel Chl species instead of Chl b. The content of the novel Chl in the transformant was approximately 10% of the total Chl, but the level of Chl a, another Chl in A. marina, did not change. The chemical structure of the novel Chl was determined to be [7-formyl]-Chl d(P) by mass spectrometry and nuclear magnetic resonance spectroscopy. [7-Formyl]-Chl d(P) is hypothesized to be produced by the combined action of chlorophyllide a oxygenase and enzyme(s) involved in Chl d biosynthesis. These results demonstrate the flexibility of the Chl biosynthetic pathway for the production of novel Chl species, indicating that a new organism with a novel Chl might be discovered in the future. PMID:22302713

  1. Nanoparticle-based measurements of pH and O2 dynamics in the rhizosphere of Zostera marina L.: effects of temperature elevation and light-dark transitions.

    PubMed

    Elgetti Brodersen, Kasper; Koren, Klaus; Lichtenberg, Mads; Kühl, Michael

    2016-07-01

    Seagrasses can modulate the geochemical conditions in their immediate rhizosphere through the release of chemical compounds from their below-ground tissue. This is a vital chemical defence mechanism, whereby the plants detoxify the surrounding sediment. Using novel nanoparticle-based optical O2 and pH sensors incorporated in reduced and transparent artificial sediment, we investigated the spatio-temporal dynamics of pH and O2 within the entire rhizosphere of Zostera marina L. during experimental manipulations of light and temperature. We combined such measurements with O2 microsensor measurements of the photosynthetic productivity and respiration of seagrass leaves. We found pronounced pH and O2 microheterogeneity within the immediate rhizosphere of Z. marina, with higher below-ground tissue oxidation capability and rhizoplane pH levels during both light exposure of the leaf canopy and elevated temperature, where the temperature-mediated stimuli of biogeochemical processes seemed to predominate. Low rhizosphere pH microenvironments appeared to correlate with plant-derived oxic microzones stimulating local sulphide oxidation and thus driving local proton generation, although the rhizoplane pH levels generally where much higher than the bulk sediment pH. Our data show that Z. marina can actively alter its rhizosphere pH microenvironment alleviating the local H2 S toxicity and enhancing nutrient availability in the adjacent sediment via geochemical speciation shift. PMID:27003238

  2. Genome sequence of the Wenxinia marina type strain (DSM 24838T), a representative of the Roseobacter group isolated from oilfield sediments

    PubMed Central

    Riedel, Thomas; Fiebig, Anne; Han, James; Huntemann, Marcel; Spring, Stefan; Petersen, Jörn; Ivanova, Natalia N.; Markowitz, Victor; Woyke, Tanja; Göker, Markus; Kyrpides, Nikos C.; Klenk, Hans-Peter

    2014-01-01

    Wenxinia marina Ying et al. 2007 is the type species of the genus Wenxinia, a representative of the Roseobacter group within the alphaproteobacterial family Rhodobacteraceae, isolated from oilfield sediments of the South China Sea. This family was shown to harbor the most abundant bacteria especially from coastal and polar waters, but was also found in microbial mats, sediments and attached to different kind of surfaces. Here we describe the features of W. marina strain HY34T together with the genome sequence and annotation of strain DSM 24838T and novel aspects of its phenotype. The 4,181,754 bp containing genome sequence encodes 4,047 protein-coding genes and 59 RNA genes. The genome of W. marina DSM 24838T was sequenced as part of the activities of the Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG) project funded by the DoE and the Transregional Collaborative Research Centre 51 (TRR51) funded by the German Research Foundation (DFG). PMID:25197468

  3. Population genetic structure of annual and perennial populations of Zostera marina L. along the Pacific coast of Baja California and the Gulf of California

    USGS Publications Warehouse

    Munoz-Salazar, R.; Talbot, S.L.; Sage, G.K.; Ward, D.H.; Cabello-Pasini, Alejandro

    2005-01-01

    The Baja California peninsula represents a biogeographical boundary contributing to regional differentiation among populations of marine animals. We investigated the genetic characteristics of perennial and annual populations of the marine angiosperm, Zostera marina, along the Pacific coast of Baja California and in the Gulf of California, respectively. Populations of Z. marina from five coastal lagoons along the Pacific coast and four sites in the Gulf of California were studied using nine microsatellite loci. Analyses of variance revealed significant interregional differentiation, but no subregional differentiation. Significant spatial differentiation, assessed using θ values, was observed among all populations within the two regions. Z. marina populations along the Pacific coast are separated by more than 220 km and had the greatest θ (0.13-0.28) values, suggesting restricted gene flow. In contrast, lower but still significant genetic differentiation was observed among populations within the Gulf of California (θ = 0.04-0.18), even though populations are separated by more than 250 km. This suggests higher levels of gene flow among Gulf of California populations relative to Pacific coast populations. Direction of gene flow was predominantly southward among Pacific coast populations, whereas no dominant polarity in the Gulf of California populations was observed. The test for isolation by distance (IBD) showed a significant correlation between genetic and geographical distances in Gulf of California populations, but not in Pacific coast populations, perhaps because of shifts in currents during El Nino Southern Oscillation (ENSO) events along the Pacific coast.

  4. Population genetic structure of annual and perennial populations of Zostera marina L. along the Pacific coast of Baja California and the Gulf of California.

    PubMed

    Muñiz-Salazar, Raquel; Talbot, Sandra L; Sage, George K; Ward, David H; Cabello-Pasini, Alejandro

    2005-03-01

    The Baja California peninsula represents a biogeographical boundary contributing to regional differentiation among populations of marine animals. We investigated the genetic characteristics of perennial and annual populations of the marine angiosperm, Zostera marina, along the Pacific coast of Baja California and in the Gulf of California, respectively. Populations of Z. marina from five coastal lagoons along the Pacific coast and four sites in the Gulf of California were studied using nine microsatellite loci. Analyses of variance revealed significant interregional differentiation, but no subregional differentiation. Significant spatial differentiation, assessed using theta(ST) values, was observed among all populations within the two regions. Z. marina populations along the Pacific coast are separated by more than 220 km and had the greatest theta(ST) (0.13-0.28) values, suggesting restricted gene flow. In contrast, lower but still significant genetic differentiation was observed among populations within the Gulf of California (theta(ST) = 0.04-0.18), even though populations are separated by more than 250 km. This suggests higher levels of gene flow among Gulf of California populations relative to Pacific coast populations. Direction of gene flow was predominantly southward among Pacific coast populations, whereas no dominant polarity in the Gulf of California populations was observed. The test for isolation by distance (IBD) showed a significant correlation between genetic and geographical distances in Gulf of California populations, but not in Pacific coast populations, perhaps because of shifts in currents during El Niño Southern Oscillation (ENSO) events along the Pacific coast.

  5. Genome sequence of the Wenxinia marina type strain (DSM 24838(T)), a representative of the Roseobacter group isolated from oilfield sediments.

    PubMed

    Riedel, Thomas; Fiebig, Anne; Han, James; Huntemann, Marcel; Spring, Stefan; Petersen, Jörn; Ivanova, Natalia N; Markowitz, Victor; Woyke, Tanja; Göker, Markus; Kyrpides, Nikos C; Klenk, Hans-Peter

    2014-06-15

    Wenxinia marina Ying et al. 2007 is the type species of the genus Wenxinia, a representative of the Roseobacter group within the alphaproteobacterial family Rhodobacteraceae, isolated from oilfield sediments of the South China Sea. This family was shown to harbor the most abundant bacteria especially from coastal and polar waters, but was also found in microbial mats, sediments and attached to different kind of surfaces. Here we describe the features of W. marina strain HY34(T) together with the genome sequence and annotation of strain DSM 24838(T) and novel aspects of its phenotype. The 4,181,754 bp containing genome sequence encodes 4,047 protein-coding genes and 59 RNA genes. The genome of W. marina DSM 24838(T) was sequenced as part of the activities of the Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG) project funded by the DoE and the Transregional Collaborative Research Centre 51 (TRR51) funded by the German Research Foundation (DFG).

  6. COVE, MARINA, and the Future of On-Board Processing (OBP) Platforms for CubeSat Science Missions

    NASA Astrophysics Data System (ADS)

    Pingree, P.; Bekker, D. L.; Bryk, M.; DeLucca, J.; Franklin, B.; Hancock, B.; Klesh, A. T.; Meehan, C.; Meshkaty, N.; Nichols, J.; Peay, C.; Rider, D. M.; Werne, T.; Wu, Y.

    2012-12-01

    The CubeSat On-board processing Validation Experiment (COVE), JPL's first CubeSat payload launched on October 28, 2011, features the Xilinx Virtex-5QV Single event Immune Reconfigurable FPGA (SIRF). The technology demonstration mission was to validate the SIRF device running an on-board processing (OBP) algorithm developed to reduce the data set by 2-orders of magnitude for the Multi-angle SpectroPolarimetric Imager (MSPI), an instrument under development at JPL (PI: D. Diner). COVE has a single data interface to the CubeSat flight computer that is used to transfer a static image taken from the CubeSat camera and store it to local memory where the FPGA then reads it to run the algorithm on it. In the next generation COVE design, called MARINA, developed for the GRIFEX CubeSat project, the OBP board is extended, using rigid-flex PCB technology, to provide an interface to a JPL-developed Read-Out Integrated Circuit (ROIC) hybridized to a detector developed by Raytheon. In this configuration the focal plane array (FPA) data can be streamed directly to the FPGA for data processing or for storage to local memory. The MARINA rigid-flex PCB design is integrated with a commercial camera lens to create a 1U instrument payload for integration with a CubeSat under development by the University of Michigan and planned for launch in 2014. In the GRIFEX technology demonstration, the limited on-board storage capacity is filled by high-rate FPA data in less than a second. The system is also limited by the CubeSat downlink data rate and several ground station passes are required to transmit this limited amount of data. While this system is sufficient to validate the ROIC technology on-orbit, the system cannot be operated in a way to perform continuous science observations due to the on-board storage and data downlink constraints. In order to advance the current platform to support sustained science observations, more on-board storage is needed. Radiation tolerant memory

  7. Constraining the historic extent of seagrass (Zostera marina) cover in the coastal bays of Virginia using stable isotopes

    NASA Astrophysics Data System (ADS)

    Egge, N. E.; Macko, S. A.

    2012-12-01

    The environmental degradation of the areas of coastal Chesapeake Bay has been linked with explosive human population growth and subsequent increases in agriculture and urbanization of the region. In the coastal bays of Virginia, numerous efforts have been made to restore seagrass (Zostera marina) meadows. As a result of large-scale, seed-based restorations in South Bay (2001) and Hog Island Bay (2007), Z. marina has come to dominate portions of these bays. In this study, stable isotope and geochemical proxies are used to suggest the historic extent of seagrass within Virginia's coastal bays. Sedimentary cores were collected from sites with different historical records of seagrass meadows, including areas with no seagrass, reseeded seagrass, or naturally occurring seagrass. Carbon and nitrogen isotope analyses were conducted on freeze-dried, acidified samples and used as proxies of the sources of the organic matter; sediments dominated by seagrass contained organic matter more enriched in 13C relative to autochthonous algal and plaktonic marine materials. Peak 137Cs activity along with 210Pb dating were used to infer the relative age of sediments. Several features are apparent from the preliminary characterization of marine sediments from these locations. The reseeded areas of South Bay and Hog Island Bay have a similar antithetical relationship between TOC (total organic carbon) and δ13C values in the topmost 15 cm of the sediment core; as the TOC increases the δ13C values become more depleted, suggesting that in those samples, seagrass provides only a minimal contribution to the preserved organic matter. Additionally there are large sections of the cores, at approximately 20 cm depth within the cores taken from South Bay, that have significantly lower TOC; this could be a result of the period without seagrass cover. The site with a natural seagrass meadow in Hog Island Bay is unlike any of the other sites analyzed: TOC increases from 0.2% at the surface to 1

  8. The Importance of Zostera marina to a Local Food Web Based on the Analysis of Compound Specific Isotopes in Maquoit Bay, Gulf of Maine

    NASA Astrophysics Data System (ADS)

    Doolittle, H. A.; Johnson, B. J.; Ambrose, W. G.; Locke, W.; Harris, C. M.

    2010-12-01

    Zostera marina (also known as eelgrass) is an important primary producer in near shore ecosystems in the Gulf of Maine, providing both habitat and nutrients for a variety of organisms (e.g., crustaceans, polychaetes, gastropods, and fish). The purpose of this study is to use compound specific δ13C analyses of essential amino acids to determine the degree to which organic matter derived from isotopically distinct primary producers (e.g., eelgrass, phytoplankton, and epiphytic algae) contribute to the diets of snails, shrimp, and fish in an eelgrass system in Casco Bay. Maquoit Bay, located in northwestern Casco Bay, in the Gulf of Maine, is a shallow estuarine system that is characterized by silt and clay sized sediments and the presence of extensive eelgrass beds. Amino acid concentrations and δ13C compositions were determined for a variety of sample-types collected in July-August, 2010, from three sites in the study area, including muscle tissue from Tautogolabrus adspersus (cunner), Gasterosteus aculeatus (3-spined stickleback), Nassarius obsoletus (snail), and Mysis spp. (shrimp), seston (i.e., phytoplankton), Z. marina, and epiphytic algae. TFAA amino acid derivatives of the total hydrolyzate were analyzed by GC-FID for amino acid concentration, and by GC-c-IRMS- for carbon isotope composition. Muscle tissue was dominated by glutamic and aspartic acids, and leucine, whereas Zostera marina was dominated by aspartic and glutamic acids, and proline. Phenylalanine and leucine in Z. marina are approximately 10 ‰ enriched in 13C relative to these same amino acids in the seston. The carbon isotope values of these essential amino acids are significantly more enriched in 13C for N. obsoletus than for T. adspersus, G. aculeatus, and Mysis spp. These data suggest that organic matter derived from Z. marina and/or epiphytic algae is more important in the diets of N. obsoletus, and organic matter derived from seston is more important for the diets of T. adspersus, G

  9. Establishing a baseline for regional scale monitoring of eelgrass (Zostera marina) habitat on the lower Alaska Peninsula

    USGS Publications Warehouse

    Hogrefe, Kyle R.; Ward, David H.; Donnelly, Tyrone F.; Dau, Niels

    2014-01-01

    Seagrass meadows, one of the world’s most widespread and productive ecosystems, provide a wide range of services with real economic value. Worldwide declines in the distribution and abundance of seagrasses and increased threats to coastal ecosystems from climate change have prompted a need to acquire baseline data for monitoring and protecting these important habitats. We assessed the distribution and abundance of eelgrass (Zostera marina) along nearly 1200 km of shoreline on the lower Alaska Peninsula, a region of expansive eelgrass meadows whose status and trends are poorly understood. We demonstrate the effectiveness of a multi-scale approach by using Landsat satellite imagery to map the total areal extent of eelgrass while integrating field survey data to improve map accuracy and describe the physical and biological condition of the meadows. Innovative use of proven methods and processing tools was used to address challenges inherent to remote sensing in high latitude, coastal environments. Eelgrass was estimated to cover ~31,000 ha, 91% of submerged aquatic vegetation on the lower Alaska Peninsula, nearly doubling the known spatial extent of eelgrass in the region. Mapping accuracy was 80%–90% for eelgrass distribution at locations containing adequate field survey data for error analysis.

  10. Spergularia marina Induces Glucagon-Like Peptide-1 Secretion in NCI-H716 Cells Through Bile Acid Receptor Activation

    PubMed Central

    Kim, Kyong; Lee, Yu Mi; Rhyu, Mee-Ra

    2014-01-01

    Abstract Spergularia marina Griseb. (SM) is a halophyte that grows in mud flats. The aerial portions of SM have been eaten as vegetables and traditionally used to prevent chronic diseases in Korea. However, there has been no scientific report that demonstrates the pharmacological effects of SM. Glucagon-like peptide-1 (GLP-1) is important for the maintenance of glucose and energy homeostasis through acting as a signal in peripheral and neural systems. To discover a functional food for regulating glucose and energy homeostasis, we evaluated the effect of an aqueous ethanolic extract (AEE) of SM on GLP-1 release from enteroendocrine NCI-H716 cells. In addition, we explored the Takeda G-protein-coupled receptor 5 (TGR5) agonist activity of AEE-SM in Chinese hamster ovary (CHO)-K1 cells transiently transfected with human TGR5. As a result, treatment of NCI-H716 cells with AEE-SM increased GLP-1 secretion and intracellular Ca2+ and cyclic AMP (cAMP) levels in a dose-dependent manner. Transfection of NCI-H716 cells with TGR5-specific small interference RNA inhibited AEE-SM-induced GLP-1 secretion and the increase in Ca2+ and cAMP levels. Moreover, AEE-SM showed that the TGR5 agonist activity in CHO-K1 cells transiently transfected with TGR5. The results suggest that AEE-SM might be a candidate for a functional food to regulate glucose and energy homeostasis. PMID:25260089

  11. Spectral properties of bacteriophytochrome AM1_5894 in the chlorophyll d-containing cyanobacterium Acaryochloris marina.

    PubMed

    Loughlin, Patrick C; Duxbury, Zane; Mugerwa, Tendo T Mukasa; Smith, Penelope M C; Willows, Robert D; Chen, Min

    2016-01-01

    Acaryochloris marina, a unicellular oxygenic photosynthetic cyanobacterium, has uniquely adapted to far-red light-enriched environments using red-shifted chlorophyll d. To understand red-light use in Acaryochloris, the genome of this cyanobacterium was searched for red/far-red light photoreceptors from the phytochrome family, resulting in identification of a putative bacteriophytochrome AM1_5894. AM1_5894 contains three standard domains of photosensory components as well as a putative C-terminal signal transduction component consisting of a histidine kinase and receiver domain. The photosensory domains of AM1_5894 autocatalytically assemble with biliverdin in a covalent fashion. This assembled AM1_5894 shows the typical photoreversible conversion of bacterial phytochromes with a ground-state red-light absorbing (Pr) form with λBV max[Pr] 705 nm, and a red-light inducible far-red light absorbing (Pfr) form with λBV max[Pfr] 758 nm. Surprisingly, AM1_5894 also autocatalytically assembles with phycocyanobilin, involving photoreversible conversion of λPCB max[Pr] 682 nm and λPCB max[Pfr] 734 nm, respectively. Our results suggest phycocyanobilin is also covalently bound to AM1_5894, while mutation of a cysteine residue (Cys11Ser) abolishes this covalent binding. The physiological function of AM1_5894 in cyanobacteria containing red-shifted chlorophylls is discussed. PMID:27282102

  12. Spectral properties of bacteriophytochrome AM1_5894 in the chlorophyll d-containing cyanobacterium Acaryochloris marina

    PubMed Central

    Loughlin, Patrick C.; Duxbury, Zane; Mugerwa, Tendo T. Mukasa; Smith, Penelope M. C.; Willows, Robert D.; Chen, Min

    2016-01-01

    Acaryochloris marina, a unicellular oxygenic photosynthetic cyanobacterium, has uniquely adapted to far-red light-enriched environments using red-shifted chlorophyll d. To understand red-light use in Acaryochloris, the genome of this cyanobacterium was searched for red/far-red light photoreceptors from the phytochrome family, resulting in identification of a putative bacteriophytochrome AM1_5894. AM1_5894 contains three standard domains of photosensory components as well as a putative C-terminal signal transduction component consisting of a histidine kinase and receiver domain. The photosensory domains of AM1_5894 autocatalytically assemble with biliverdin in a covalent fashion. This assembled AM1_5894 shows the typical photoreversible conversion of bacterial phytochromes with a ground-state red-light absorbing (Pr) form with λBV max[Pr] 705 nm, and a red-light inducible far-red light absorbing (Pfr) form with λBV max[Pfr] 758 nm. Surprisingly, AM1_5894 also autocatalytically assembles with phycocyanobilin, involving photoreversible conversion of λPCB max[Pr] 682 nm and λPCB max[Pfr] 734 nm, respectively. Our results suggest phycocyanobilin is also covalently bound to AM1_5894, while mutation of a cysteine residue (Cys11Ser) abolishes this covalent binding. The physiological function of AM1_5894 in cyanobacteria containing red-shifted chlorophylls is discussed. PMID:27282102

  13. Toads on Lava: Spatial Ecology and Habitat Use of Invasive Cane Toads (Rhinella marina) in Hawai'i.

    PubMed

    Ward-Fear, Georgia; Greenlees, Matthew J; Shine, Richard

    2016-01-01

    Most ecological research on cane toads (Rhinella marina) has focused on invasive populations in Australia, ignoring other areas where toads have been introduced. We radio-tracked and spool-tracked 40 toads, from four populations on the island of Hawai'i. Toads moved extensively at night (mean 116 m, from spool-tracking) but returned to the same or a nearby retreat-site each day (from radio-tracking, mean distance between successive retreat sites 11 m; 0 m for 70% of records). Males followed straighter paths during nocturnal movements than did females. Because moist sites are scarce on the highly porous lava substrate, Hawai'ian toads depend on anthropogenic disturbance for shelter (e.g. beneath buildings), foraging (e.g. suburban lawns, golf courses) and breeding (artificial ponds). Foraging sites are further concentrated by a scarcity of flying insects (negating artificial lights as prey-attractors). Habitat use of toads shifted with time (at night, toads selected areas with less bare ground, canopy, understory and leaf-litter), and differed between sexes (females foraged in areas of bare ground with dense understory vegetation). Cane toads in Hawai'i thrive in scattered moist patches within a severely arid matrix, despite a scarcity of flying insects, testifying to the species' ability to exploit anthropogenic disturbance. PMID:27027738

  14. Toads on Lava: Spatial Ecology and Habitat Use of Invasive Cane Toads (Rhinella marina) in Hawai’i

    PubMed Central

    Ward-Fear, Georgia; Greenlees, Matthew J.; Shine, Richard

    2016-01-01

    Most ecological research on cane toads (Rhinella marina) has focused on invasive populations in Australia, ignoring other areas where toads have been introduced. We radio-tracked and spool-tracked 40 toads, from four populations on the island of Hawai’i. Toads moved extensively at night (mean 116 m, from spool-tracking) but returned to the same or a nearby retreat-site each day (from radio-tracking, mean distance between successive retreat sites 11 m; 0 m for 70% of records). Males followed straighter paths during nocturnal movements than did females. Because moist sites are scarce on the highly porous lava substrate, Hawai’ian toads depend on anthropogenic disturbance for shelter (e.g. beneath buildings), foraging (e.g. suburban lawns, golf courses) and breeding (artificial ponds). Foraging sites are further concentrated by a scarcity of flying insects (negating artificial lights as prey-attractors). Habitat use of toads shifted with time (at night, toads selected areas with less bare ground, canopy, understory and leaf-litter), and differed between sexes (females foraged in areas of bare ground with dense understory vegetation). Cane toads in Hawai’i thrive in scattered moist patches within a severely arid matrix, despite a scarcity of flying insects, testifying to the species’ ability to exploit anthropogenic disturbance. PMID:27027738

  15. Ocean acidification increases copper toxicity to the early life history stages of the polychaete Arenicola marina in artificial seawater.

    PubMed

    Campbell, Anna L; Mangan, Stephanie; Ellis, Robert P; Lewis, Ceri

    2014-08-19

    The speciation and therefore bioavailability of the common pollutant copper is predicted to increase within the pH range anticipated under near-future ocean acidification (OA), hence the potential exists for copper toxicity to marine organisms to also increase. We investigated the impact of OA (seawater pH values of 7.77 (pCO2 1400 μatm) and 7.47 (pCO2 3000 μatm)) upon copper toxicity responses in early life history stages of the polychaete Arenicola marina and found both synergistic and additive toxicity effects of combined exposures depending on life history stage. The toxicity of copper on sperm DNA damage and early larval survivorship was synergistically increased under OA conditions. Larval survival was reduced by 24% when exposed to both OA and copper combined compared to single OA or copper exposures. Sperm motility was negatively affected by both OA and copper singularly with additive toxicity effects of the two stressors when combined. Fertilization success was also negatively affected by both OA and copper individually, but no additive effects when exposed as combined stressors were present for this stage. These findings add to the growing body of evidence that OA will act to increase the toxicity of copper to marine organisms, which has clear implications for coastal benthic ecosystems suffering chronic metal pollution as pCO2 levels rise and drive a reduction in seawater pH.

  16. Lanfrediella amphicirrus gen. nov. sp. nov. Nematotaeniidae (Cestoda: Cyclophyllidea), a tapeworm parasite of Rhinella marina (Linnaeus, 1758) (Amphibia: Bufonidae).

    PubMed

    Melo, Francisco Tiago de Vasconcelos; Giese, Elane Guerreiro; Furtado, Adriano Penha; Soares, Maurílio José; Gonçalves, Evonnildo Costa; Vallinoto, Antonio Carlos Rosário; Santos, Jeannie Nascimento dos

    2011-09-01

    The family Nematotaeniidae, tapeworms commonly found in the small intestines of amphibians and reptiles, includes 27 recognised species distributed among four genera: Bitegmen Jones, Cylindrotaenia Jewell, Distoichometra Dickey and Nematotaenia Lühe. The taxonomy of these cestodes is poorly defined, due in part to the difficulties of observing many anatomical traits. This study presents and describes a new genus and species of nematotaeniid parasite found in cane toads (Rhinella marina) from eastern Brazilian Amazonia. The cestodes were collected during the necropsy of 20 hosts captured in the urban area of Belém, Pará. The specimens were fixed and processed for light microscopy, scanning electron microscopy (SEM) and three-dimensional (3D) reconstruction. Samples were also collected for molecular analyses. The specimens presented a cylindrical body, two testes and paruterine organs. However, they could not be allocated to any of the four existing nematotaeniid genera due to the presence of two each of dorsal compact medullary testes, cirri, cirrus pouches, genital pores, ovaries and vitelline glands per mature segment. Lanfrediella amphicirrus gen. nov. sp. nov. is the first nematotaeniid studied using Historesin analysis, SEM and 3D reconstruction, and it is the second taxon for which molecular data have been deposited in GenBank.

  17. Factors Affecting Trophic Control of Community Structure and Ecosystem Functioning in Experimental Mesocosms of Seagrass (Zostera marina L.)

    NASA Astrophysics Data System (ADS)

    Lefcheck, J.; Duffy, J.

    2008-12-01

    Nutrient loading of coastal and estuarine waters threatens seagrass communities by promoting the growth of micro- and macroalgae, which then reduce the availability of light and nutrients. However, populations of invertebrate mesograzers are able to mitigate the negative impact of eutrophication through top-down control. We performed a factorial mesocosm experiment to examine the interactive relationships between light, nutrients, and mesograzer presence in structuring experimental ecosystems of eelgrass (Zostera marina). We found that mesograzer presence strongly reduced epiphytic algal biomass in every case, which remains consistent with previous mesocosm studies. We also observed a synergistic light-by-nutrient interaction that enhanced both epiphyte biomass and mesograzer abundance. The timing of this relationship is suggestive of weaker bottom-up control. Unlike previous studies, we found that light alone rarely affected either epiphyte biomass or mesograzer abundance. We believe that this result may be due to a combination of macroalgal shading and persistent grazing. Further processing of primary and secondary producer biomasses and elemental ratios, as well as the completion of feeding assays to gauge mesograzer feeding rates on different types of algae, will serve to reinforce these conclusions and to better define the relationship between these factors.

  18. An experimental transplantation to select the optimal site for restoration of the eelgrass Zostera marina in the Taehwa River estuary

    NASA Astrophysics Data System (ADS)

    Park, Jung-Im; Kim, Jeong Bae; Lee, Kun-Seop; Son, Min Ho

    2013-12-01

    To select the optimal site for the restoration of seagrass habitats in the Taehwa River estuary, we transplanted the eelgrass Zostera marina to three potential candidate sites in March 2007 and monitored the transplanted seagrass and associated environmental factors for six months. In all three sites, the transplanted seagrasses exhibited no initial morphological loss due to transplanting stress. The transplanted seagrass communities at sites 2 and 3 showed more than a 180% increase in density over the entire survey period. In contrast, despite a density increase in the first month after transplantation, most of the transplanted seagrasses at site 1 died. This may be due to the large decrease in underwater irradiance reaching the seagrass leaves at site 1 for two months during June and July, which fell below the level of compensation irradiance. The growth rate and size of the seagrass shoots were also larger at sites 2 and 3 compared with site 1. This is probably due to higher nutrient concentrations in the sediment pore water at sites 2 and 3 compared with site 1, although water depth, salinity, and the nutrient concentrations in the water columns from the three sites were similar. Therefore, for the restoration of seagrass habitats in the Taehwa River estuary, sites 2 and 3 were preferable to site 1 as transplantation sites.

  19. Toxicity of reduced nitrogen in eelgrass (Zostera marina) is highly dependent on shoot density and pH.

    PubMed

    van der Heide, T; Smolders, A J P; Rijkens, B G A; van Nes, E H; van Katwijk, M M; Roelofs, J G M

    2008-12-01

    In sheltered, eutrophicated estuaries, reduced nitrogen (NHx), and pH levels in the water layer can be greatly enhanced. In laboratory experiments, we studied the interactive effects of NHx, pH, and shoot density on the physiology and survival of eelgrass (Zostera marina). We tested long-term tolerance to NHx at pH 8 in a 5-week experiment. Short-term tolerance was tested for two shoot densities at both pH 8 and 9 in a 5-day experiment. At pH 8, eelgrass accumulated nitrogen as free amino acids when exposed to high loads of NHx, but showed no signs of necrosis. Low shoot density treatments became necrotic within days when exposed to NHx at pH 9. Increased NH3 intrusion and carbon limitation seemed to be the cause of this, as intracellular NHx could no longer be assimilated. Remarkably, experiments with high shoot densities at pH 9 showed hardly any necrosis, as the plants seemed to be able to alleviate the toxic effects of high NHx loads through joint NHx uptake. Our results suggest that NHx toxicity can be important in worldwide observed seagrass mass mortalities. We argue that the mitigating effect of high seagrass biomass on NHx toxicity is a positive feedback mechanism, potentially leading to alternative stable states in field conditions.

  20. Community structure and spatial variation of benthic invertebrates associated with Zostera marina (L.) beds in the northern Baltic Sea

    NASA Astrophysics Data System (ADS)

    Boström, Christoffer; Bonsdorff, Erik

    1997-05-01

    The distribution and bed structure of eelgrass ( Zostera marina L.), and its importance for associated faunal communities in the coastal areas of the northern Baltic Sea are poorly known. The spatial distribution of the fauna associated with Zostera was studied at five localities in SW Finland in 1993-1994. Zostera was common on all localities, but the beds varied in terms of area (1-5 m diameter), density (50-500 shoots/m 2) and blade length (20-110 cm). A total of about 40 species or taxa were recorded. The zoobenthic infauna showed significant spatial differences, and total abundance and species diversity were significantly higher in the Zostera beds than in adjacent bare sand. The total abundance in Zostera ranged from 25 000 to 50 000 ind/m 2 and in sand from 2500 to 15 000 ind/m 2 The mean number of species in Zostera ranged from 5.9 to 8.8 spp ( H' = 1.76-2.54) and in sand from 2.2 to 5.5 spp ( H' = 1.67-2.31). The epifauna in Zostera was numerically dominated by grazing gastropods (Hydrobiidae) and copepods. The epifauna is an important community component, which contributes to the total diversity of the Zostera assemblage. These systems are among the most species-rich components of the shallow soft-bottom ecosystems in the northern Baltic Sea. The mechanisms structuring both the Zostera and the ambient sand-bottom habitats are presented.

  1. Living up to its name? The effect of salinity on development, growth, and phenotype of the "marine" toad (Rhinella marina).

    PubMed

    Wijethunga, Uditha; Greenlees, Matthew; Shine, Richard

    2016-02-01

    The highly permeable integument of amphibians renders them vulnerable to chemical characteristics of their environment, especially during the aquatic larval stage. As the cane toad (Rhinella marina, Bufonidae) invades southwards along the east coast of Australia, it is encountering waterbodies with highly variable conditions of temperature, pH, and salinity. Understanding the tolerance of toads to these conditions can clarify the likely further spread of the invader, as well as the adaptability of the species to novel environmental challenges. We measured salinity in waterbodies in the field and conducted laboratory trials to investigate the impacts of salinity on toad viability. Eggs and tadpoles from the southern invasion front tolerated the most saline conditions we found in potential spawning ponds during surveys [equivalent to 1200 ppm (3.5 % the salinity of seawater)]. Indeed, high-salinity treatments increased tadpole body sizes, accelerated metamorphosis, and improved locomotor ability of metamorphs (but did not affect metamorph morphology). At very low salinity [40 ppm (0.1 % seawater)], eggs hatched but larvae did not develop past Gosner stage 37. Our study shows that the egg and larval life stages of cane toads can tolerate wide variation in the salinity of natal ponds and that this aspect of waterbody chemistry is likely to facilitate rather than constrain continued southward expansion of the toad invasion front in eastern Australia.

  2. Plant Growth Promoting of Endophytic Sporosarcina aquimarina SjAM16103 Isolated from the Pneumatophores of Avicennia marina L.

    PubMed Central

    Janarthine, S. Rylo Sona; Eganathan, P.

    2012-01-01

    Endophytic Sporosarcina aquimarina SjAM16103 was isolated from the inner tissues of pneumatophores of mangrove plant Avicennia marina along with Bacillus sp. and Enterobacter sp. Endophytic S. aquimarina SjAM16103 was Gram variable, and motile bacterium measured 0.6–0.9 μm wide by 1.7–2.0 μm long and light orange-brown coloured in 3-day cultures on tryptone broth at 26°C. Nucleotide sequence of this strain has been deposited in the GenBank under accession number GU930359. This endophytic bacterium produced 2.37 μMol/mL of indole acetic acid and siderophore as it metabolites. This strain could solubilize phosphate molecules and fixes atmospheric nitrogen. Endophytic S. aquimarina SjAM16103 was inoculated into four different plants under in vitro method to analyse its growth-promoting activity and role inside the host plants. The growth of endophytic S. aquimarina SjAM16103 inoculated explants were highly significant than the uninoculated control explants. Root hairs and early root development were observed in the endophytic S. aquimarina SjAM16103 inoculated explants. PMID:22811715

  3. Simulations of Energy Transfer Processes along the Rod Shaped PBP and Chl d Antenna of A.marina

    NASA Astrophysics Data System (ADS)

    Schmitt, F.-J.; Fuesers, J.; Südmeyer, H.; Börner, J.; Jeyasangar, V.; Olliges, R.; Maksimov, E. G.; Grehn, M.; Theiss, C.; Paschenko, V. Z.; Eichler, H. J.; Renger, G.

    2010-11-01

    Time- and wavelength-correlated single photon counting and fs-absorption change measurements of the excitation dynamics were performed on phycobiliproteins (PBP) and whole cells of A.marina. The excited state population was simulated with a set of coupled linear differential equations. The overall energy transfer from PBP to the membrane intrinsic Chl d antenna was found to be limited by electronic excitation energy transfer (EET) along all coupled pigments in the PBP from the short wavelength phycocyanin (PC) molecules to the "terminal emitter" (TE) allophycocyanin (APC). Our results reveal that the EET step from TE in the PBP antenna to the first Chl d acceptor occurs with a time constant of 20-30 ps leading to a 70-80 ps time constant observed in the fluorescence decay which describes the overall (diffusive) EET from PBP to Chl d [1]. The overall EET is therefore limited by the diffusive EET along the PBP antenna. Based on a Förster type EET the distance between the TE in the PBP antenna and the first neighbour Chl d molecule is determined to be 2.7 nm for a 20 ps transfer step.

  4. Photosynthetic and Stomatal Responses of Two Mangrove Species, Aegiceras corniculatum and Avicennia marina, to Long Term Salinity and Humidity Conditions.

    PubMed

    Ball, M C; Farquhar, G D

    1984-01-01

    Gas exchange characteristics were studied in two mangrove species, Aegiceras corniculatum (L.) Blanco and Avicennia marina (Forstk.) Vierh. var australasica (Walp.) Moldenke, grown under a variety of salinity and humidity conditions. The assimilation rate was measured as a function of the intercellular CO(2) concentration [A(c(i)) curve]. The photosynthetic capacity decreased with increase in salinity from 50 to 500 millimolar NaCl, as shown by decline in both the initial linear slope and the upper plateau of the A(c(i)) curve, with A. corniculatum being the more sensitive species. The decline in photosynthetic capacity was enhanced by increase in the leaf to air vapor pressure difference from 6 to 24 millibars, but this treatment caused a decrease in only the upper plateau of the A(c(i)) curve. Stomatal conductance was such that the intercellular CO(2) concentration obtaining under normal atmospheric conditions occurred near the transition between the lower linear and upper plateau portions of the A(c(i)) curves. Thus, stomatal conductance and photosynthetic capacity together co-limited the assimilation rate, which declined with increasing salinity and decreasing humidity. The marginal water cost of carbon assimilation was similar in most treatments, despite variation in the water loss/carbon gain ratio.

  5. Desulfovibrio zosterae sp. nov., a new sulfate reducer isolated from surface-sterilized roots of the seagrass Zostera marina.

    PubMed

    Nielsen, J T; Liesack, W; Finster, K

    1999-04-01

    A sulfate-reducing bacterium, designated strain lacT, was isolated from surface-sterilized roots of the benthic macrophyte Zostera marina. Cells were motile by means of a single polar flagellum. Strain lacT utilized lactate, pyruvate, malate, ethanol, L-alanine, fumarate, choline and fructose with sulfate as electron acceptor. In addition, fumarate, pyruvate and fructose were also degraded without an external electron acceptor. Sulfate could be substituted with thiosulfate, sulfite and elemental sulfur. Optimal growth was observed between 32.5 and 34.5 degrees C, at an NaCl concentration of 0.2 M and in a pH range between 6.8 and 7.3. The G + C content of the DNA was 42.7 +/- 0.2 mol%. Desulfoviridin and catalase were present. Strain lacT contained c-type cytochromes. Comparative 16S rRNA gene sequence analysis and the fatty acid pattern grouped this isolate into the genus Desulfovibrio. However, strain lacT differs from all other described Desulfovibrio species on the bases of its 16S rRNA gene sequence, the G + C content, its cellular lipid pattern and the utilization pattern of substrates. These characteristics establish strain lacT (= DSM 11974T) as a novel species of the genus Desulfovibrio, for which the name Desulfovibrio zosterae sp. nov. is proposed.

  6. Molecular cloning of class III chitinase gene from Avicennia marina and its expression analysis in response to cadmium and lead stress.

    PubMed

    Wang, Li-Ying; Wang, You-Shao; Zhang, Jing-Ping; Gu, Ji-Dong

    2015-10-01

    Mangrove species have high tolerance to heavy metal pollution. Chitinases have been widely reported as defense proteins in response to heavy metal stress in terrestrial plants. In this study, a full-length cDNA sequence encoding an acidic and basic class III chitinase (AmCHI III) was cloned by using RT-PCR and RACE methods in Avicennia marina. AmCHI III mRNA expression in leaf of A. marina were investigated under Cd, Pb stresses on using real-time quantitative PCR. The deduced AmCHI III protein consists of 302 amino acids, including a signal putative peptide region, and a catalytic domain. Homology modeling of the catalytic domain revealed a typical molecular structure of class III plant chitinases. Results further demonstrated that the regulation of AmCHI III mRNA expression in leaves was strongly dependent on Cd, Pb stresses. AmCHI III mRNA expressions were significantly increased in response to Cd, Pb, and peaked at 7 days Cd-exposure, 7 days Pb-exposure, respectively. AmCHI III mRNA expression exhibited more sensitive to Pb stress than Cd stress. This work was the first time cloing chitinase from A. marina, and it brought evidence on chitinase gene involving in heavy metals (Cd(2+) and Pb(2+)) resistance or detoxification in plants. Further studies including the promoter and upstream regulation, gene over-expression and the response of mangrove chitinases to other stresses will shed more light on the role of chitinase in mangrove plants.

  7. Understanding the mechanisms of antitropical divergence in the seabird White-faced Storm-petrel (Procellariiformes: Pelagodroma marina) using a multilocus approach.

    PubMed

    Silva, Mónica C; Matias, Rafael; Wanless, Ross M; Ryan, Peter G; Stephenson, Brent M; Bolton, Mark; Ferrand, Nuno; Coelho, M Manuela

    2015-06-01

    Analytical methods that apply coalescent theory to multilocus data have improved inferences of demographic parameters that are critical to understanding population divergence and speciation. In particular, at the early stages of speciation, it is important to implement models that accommodate conflicting gene trees, and benefit from the presence of shared polymorphisms. Here, we employ eleven nuclear loci and the mitochondrial control region to investigate the phylogeography and historical demography of the pelagic seabird White-faced Storm-petrel (Pelagodroma marina) by sampling subspecies across its antitropical distribution. Groups are all highly differentiated: global mitochondrial ΦST = 0.89 (P < 0.01) and global nuclear ΦST varies between 0.22 and 0.83 (all P < 0.01). The complete lineage sorting of the mitochondrial locus between hemispheres is corroborated by approximately half of the nuclear genealogies, suggesting a long-term antitropical divergence in isolation. Coalescent-based estimates of demographic parameters suggest that hemispheric divergence of P. marina occurred approximately 840 000 ya (95% HPD 582 000-1 170 000), in the absence of gene flow, and divergence within the Southern Hemisphere occurred 190 000 ya (95% HPD 96 000-600 000), both probably associated with the profound palaeo-oceanographic changes of the Pleistocene. A fledgling sampled in St Helena (tropical South Atlantic) suggests recent colonization from the Northern Hemisphere. Despite the great potential for long-distance dispersal, P. marina antitropical groups have been evolving as independent, allopatric lineages, and divergence is probably maintained by philopatry coupled with asynchronous reproductive phenology and local adaptation. PMID:25903359

  8. Molecular cloning of class III chitinase gene from Avicennia marina and its expression analysis in response to cadmium and lead stress.

    PubMed

    Wang, Li-Ying; Wang, You-Shao; Zhang, Jing-Ping; Gu, Ji-Dong

    2015-10-01

    Mangrove species have high tolerance to heavy metal pollution. Chitinases have been widely reported as defense proteins in response to heavy metal stress in terrestrial plants. In this study, a full-length cDNA sequence encoding an acidic and basic class III chitinase (AmCHI III) was cloned by using RT-PCR and RACE methods in Avicennia marina. AmCHI III mRNA expression in leaf of A. marina were investigated under Cd, Pb stresses on using real-time quantitative PCR. The deduced AmCHI III protein consists of 302 amino acids, including a signal putative peptide region, and a catalytic domain. Homology modeling of the catalytic domain revealed a typical molecular structure of class III plant chitinases. Results further demonstrated that the regulation of AmCHI III mRNA expression in leaves was strongly dependent on Cd, Pb stresses. AmCHI III mRNA expressions were significantly increased in response to Cd, Pb, and peaked at 7 days Cd-exposure, 7 days Pb-exposure, respectively. AmCHI III mRNA expression exhibited more sensitive to Pb stress than Cd stress. This work was the first time cloing chitinase from A. marina, and it brought evidence on chitinase gene involving in heavy metals (Cd(2+) and Pb(2+)) resistance or detoxification in plants. Further studies including the promoter and upstream regulation, gene over-expression and the response of mangrove chitinases to other stresses will shed more light on the role of chitinase in mangrove plants. PMID:26044930

  9. The role of O2 as an electron acceptor alternative to CO2 in photosynthesis of the common marine angiosperm Zostera marina L.

    PubMed

    Buapet, Pimchanok; Björk, Mats

    2016-07-01

    This study investigates the role of O2 as an electron acceptor alternative to CO2 in photosynthesis of the common marine angiosperm Zostera marina L. Electron transport rates (ETRs) and non-photochemical quenching (NPQ) of Z. marina were measured under saturating irradiance in synthetic seawater containing 2.2 mM DIC and no DIC with different O2 levels (air-equilibrated levels, 3 % of air equilibrium and restored air-equilibrated levels). Lowering O2 did not affect ETR when DIC was provided, while it caused a decrease in ETR and an increase in NPQ in DIC-free media, indicating that O2 acted as an alternative electron acceptor under low DIC. The ETR and NPQ as a function of irradiance were subsequently assessed in synthetic seawater containing (1) 2.2 mM DIC, air-equilibrated O2; (2) saturating CO2, no O2; and (3) no DIC, air-equilibrated O2. These treatments were combined with glycolaldehyde pre-incubation. Glycolaldehyde caused a marked decrease in ETR in DIC-free medium, indicating significant electron flow supported by photorespiration. Combining glycolaldehyde with O2 depletion completely suppressed ETR suggesting the operation of the Mehler reaction, a possibility supported by the photosynthesis-dependent superoxide production. However, no notable effect of suppressing the Mehler reaction on NPQ was observed. It is concluded that during DIC-limiting conditions, such as those frequently occurring in the habitats of Z. marina, captured light energy exceeds what is utilised for the assimilation of available carbon, and photorespiration is a major alternative electron acceptor, while the contribution of the Mehler reaction is minor.

  10. Factors Influencing Spatial and Annual Variability in Eelgrass (Zostera marina L.) Meadows in Willapa Bay, Washington, and Coos Bay, Oregon, Estuaries

    SciTech Connect

    Thom, Ronald M.; Borde, Amy B.; Rumrill, Steven; Woodruff, Dana L.; Williams, Greg D.; Southard, John A.; Sargeant, Susan L.

    2003-08-01

    Environmental factors that influence annual variability and spatial differences in eelgrass meadows (Zostera marina L.) were examined within Willapa Bay, WA, and Coos Bay, OR, over a period of 4 years (1998-2001). A suite of eelgrass metrics were recorded annually at field sites that spanned the estuarine gradient from the marine-dominated to mesohaline regions. Growth of eelgrass plants was also monitored on a monthly basis within Sequim Bay, WA. Both the spatial cover and density of Z. marina were positively correlated with estuarine salinity and inversely correlated with temperature of the tideflat sediment. Experimental evidence verified that optimal eelgrass growth occurred at highest salinities and relatively low temperatures. Eelgrass density, biomass, and the incident of flowering plants all increased substantially in Willapa Bay, and less so in Coos Bay, over the duration of the study. Warmer winters and cooler summers associated with the transition from El Ni?o to La Ni?a ocean conditions during the study period were correlated with the increase in eelgrass abundance and flowering. Anthropogenic factors (e.g., disturbance and erosion by vessel wakes and recreational shellfishing activities) may have contributed to spatial variability. Our findings indicate that large-scale changes in climate and nearshore ocean conditions can exert a strong regional influence on eelgrass abundance, which can vary annually by as much as 700% in Willapa Bay. Lower levels of variability observed in Coos Bay may be due to the stronger and more direct influence of the nearshore Pacific Ocean. We conclude that climate variation may have profound effects on the abundance and distribution of eelgrass meadows throughout the Pacific Northwest, and we anticipate that ocean conditions will emerge as a primary driving force for living estuarine resources and ecological processes that are associated with Z. marina beds within the landscape of these estuarine tidal basins.

  11. Identification of light-harvesting chlorophyll a/b-binding protein genes of Zostera marina L. and their expression under different environmental conditions

    NASA Astrophysics Data System (ADS)

    Kong, Fanna; Zhou, Yang; Sun, Peipei; Cao, Min; Li, Hong; Mao, Yunxiang

    2016-02-01

    Photosynthesis includes the collection of light and the transfer of solar energy using light-harvesting chlorophyll a/b-binding (LHC) proteins. In high plants, the LHC gene family includes LHCA and LHCB sub-families, which encode proteins constituting the light-harvesting complex of photosystems I and II. Zostera marina L. is a monocotyledonous angiosperm and inhabits submerged marine environments rather than land environments. We characterized the Lhca and Lhcb gene families of Z. marina from the expressed sequence tags (EST) database. In total, 13 unigenes were annotated as ZmLhc, 6 in Lhca family and 7 in ZmLhcb family. ZmLHCA and ZmLHCB contained the conservative LHC motifs and amino acid residues binding chlorophyll. The average similarity among mature ZmLHCA and ZmLHCB was 48.91% and 48.66%, respectively, which indicated a high degree of divergence within ZmLHChc gene family. The reconstructed phylogenetic tree showed that the tree topology and phylogenetic relationship were similar to those reported in other high plants, suggesting that the Lhc genes were highly conservative and the classification of ZmLhc genes was consistent with the evolutionary position of Z. marina. Real-time reverse transcription (RT) PCR analysis showed that different members of ZmLhca and ZmLhcb responded to a stress in different expression patterns. Salinity, temperature, light intensity and light quality may affect the expression of most ZmLhca and ZmLhcb genes. Inorganic carbon concentration and acidity had no obvious effect on ZmLhca and ZmLhcb gene expression, except for ZmLhca6.

  12. The thermodynamics and kinetics of electron transfer between cytochrome b6f and photosystem I in the chlorophyll d-dominated cyanobacterium, Acaryochloris marina.

    PubMed

    Bailleul, Benjamin; Johnson, Xenie; Finazzi, Giovanni; Barber, James; Rappaport, Fabrice; Telfer, Alison

    2008-09-12

    We have investigated the photosynthetic properties of Acaryochloris marina, a cyanobacterium distinguished by having a high level of chlorophyll d, which has its absorption bands shifted to the red when compared with chlorophyll a. Despite this unusual pigment content, the overall rate and thermodynamics of the photosynthetic electron flow are similar to those of chlorophyll a-containing species. The midpoint potential of both cytochrome f and the primary electron donor of photosystem I (P(740)) were found to be unchanged with respect to those prevailing in organisms having chlorophyll a, being 345 and 425 mV, respectively. Thus, contrary to previous reports (Hu, Q., Miyashita, H., Iwasaki, I. I., Kurano, N., Miyachi, S., Iwaki, M., and Itoh, S. (1998) Proc. Natl. Acad. Sci. U. S. A. 95, 13319-13323), the midpoint potential of the electron donor P(740) has not been tuned to compensate for the decrease in excitonic energy in A. marina and to maintain the reducing power of photosystem I. We argue that this is a weaker constraint on the engineering of the oxygenic photosynthetic electron transfer chain than preserving the driving force for plastoquinol oxidation by P(740), via the cytochrome b(6)f complex. We further show that there is no restriction in the diffusion of the soluble electron carrier between cytochrome b(6)f and photosystem I in A. marina, at variance with plants. This difference probably reflects the simplified ultrastructure of the thylakoids of this organism, where no segregation into grana and stroma lamellae is observed. Nevertheless, chlorophyll fluorescence measurements suggest that there is energy transfer between adjacent photosystem II complexes but not from photosystem II to photosystem I, indicating spatial separation between the two photosystems. PMID:18635535

  13. Soil and Rhizosphere Associated Fungi in Gray Mangroves (Avicennia marina) from the Red Sea--A Metagenomic Approach.

    PubMed

    Simões, Marta Filipa; Antunes, André; Ottoni, Cristiane A; Amini, Mohammad Shoaib; Alam, Intikhab; Alzubaidy, Hanin; Mokhtar, Noor-Azlin; Archer, John A C; Bajic, Vladimir B

    2015-10-01

    Covering a quarter of the world's tropical coastlines and being one of the most threatened ecosystems, mangroves are among the major sources of terrestrial organic matter to oceans and harbor a wide microbial diversity. In order to protect, restore, and better understand these ecosystems, researchers have extensively studied their microbiology, yet few surveys have focused on their fungal communities. Our lack of knowledge is even more pronounced for specific fungal populations, such as the ones associated with the rhizosphere. Likewise, the Red Sea gray mangroves (Avicennia marina) remain poorly characterized, and understanding of their fungal communities still relies on cultivation-dependent methods. In this study, we analyzed metagenomic datasets from gray mangrove rhizosphere and bulk soil samples collected in the Red Sea coast, to obtain a snapshot of their fungal communities. Our data indicated that Ascomycota was the dominant phylum (76%-85%), while Basidiomycota was less abundant (14%-24%), yet present in higher numbers than usually reported for such environments. Fungal communities were more stable within the rhizosphere than within the bulk soil, both at class and genus level. This finding is consistent with the intrinsic patchiness in soil sediments and with the selection of specific microbial communities by plant roots. Our study indicates the presence of several species on this mycobiome that were not previously reported as mangrove-associated. In particular, we detected representatives of several commercially-used fungi, e.g., producers of secreted cellulases and anaerobic producers of cellulosomes. These results represent additional insights into the fungal community of the gray mangroves of the Red Sea, and show that they are significantly richer than previously reported. PMID:26549842

  14. Differences in benthic fauna and sediment among mangrove ( Avicennia marina var. australasica) stands of different ages in New Zealand

    NASA Astrophysics Data System (ADS)

    Morrisey, D. J.; Skilleter, G. A.; Ellis, J. I.; Burns, B. R.; Kemp, C. E.; Burt, K.

    2003-03-01

    Management of coastal environments requires understanding of ecological relationships among different habitats and their biotas. Changes in abundance and distribution of mangroves, like those of other coastal habitats, have generally been interpreted in terms of changes in biodiversity or fisheries resources within individual stands. In several parts of their range, anthropogenically increased inputs of sediment to estuaries have led to the spread of mangroves. There is, however, little information on the relative ecological properties, or conservational values, of stands of different ages. The faunal, floral and sedimentological properties of mangrove ( Avicennia marina var. australasica) stands of two different ages in New Zealand has been compared. Older (>60 years) and younger (3-12 years) stands showed clear separation on the basis of environmental characteristics and benthic macrofauna. Numbers of faunal taxa were generally larger at younger sites, and numbers of individuals of several taxa were also larger at these sites. The total number of individuals was not different between the two age-classes, largely due to the presence of large numbers of the surface-living gastropod Potamopyrgus antipodarum at the older sites. It is hypothesized that as mangrove stands mature, the focus of faunal diversity may shift from the benthos to animals living on the mangrove plants themselves, such as insects and spiders, though these were not included in the present study. Differences in the faunas were coincident with differences in the nature of the sediment. Sediments in older stands were more compacted and contained more organic matter and leaf litter. Measurement of leaf chemistry suggested that mangrove plants in the younger stands were able to take up more N and P than those in the older stands.

  15. Indirect effects of predators control herbivore richness and abundance in a benthic eelgrass (Zostera marina) mesograzer community.

    PubMed

    Amundrud, Sarah L; Srivastava, Diane S; O'Connor, Mary I

    2015-07-01

    Herbivore communities can be sensitive to changes in predator pressure (top-down effects) and resource availability (bottom-up effects) in a wide range of systems. However, it remains unclear whether such top-down and bottom-up effects reflect direct impacts of predators and/or resources on herbivores, or are indirect, reflecting altered interactions among herbivore species. We quantified direct and indirect effects of bottom-up and top-down processes on an eelgrass (Zostera marina) herbivore assemblage. In a field experiment, we factorially manipulated water column nutrients (with Osmocote(™) slow-release fertilizer) and predation pressure (with predator exclusion cages) and measured the effects on herbivore abundance, richness and beta diversity. We examined likely mechanisms of community responses by statistically exploring the response of individual herbivore species to trophic manipulations. Predators increased herbivore richness and total abundance, in both cases through indirect shifts in community composition. Increases in richness occurred through predator suppression of common gammarid amphipod species (Monocorophium acherusicum and Photis brevipes), permitting the inclusion of rarer gammarid species (Aoroides columbiae and Pontogeneia rostrata). Increased total herbivore abundance reflected increased abundance of a caprellid amphipod species (Caprella sp.), concurrent with declines in the abundance of other common species. Furthermore, predators decreased beta diversity by decreasing variability in Caprella sp. abundance among habitat patches. Osmocote(™) fertilization increased nutrient concentrations locally, but nutrients dissipated to background levels within 3 m of the fertilizer. Nutrient addition weakly affected the herbivore assemblage, not affecting richness and increasing total abundance by increasing one herbivore species (Caprella sp.). Nutrient addition did not affect beta diversity. We demonstrated that assemblage-level effects of

  16. Comparative analysis of expressed sequence tag (EST) libraries in the seagrass Zostera marina subjected to temperature stress.

    PubMed

    Reusch, Thorsten B H; Veron, Amelie S; Preuss, Christoph; Weiner, January; Wissler, Lothar; Beck, Alfred; Klages, Sven; Kube, Michael; Reinhardt, Richard; Bornberg-Bauer, Erich

    2008-01-01

    Global warming is associated with increasing stress and mortality on temperate seagrass beds, in particular during periods of high sea surface temperatures during summer months, adding to existing anthropogenic impacts, such as eutrophication and habitat destruction. We compare several expressed sequence tag (EST) in the ecologically important seagrass Zostera marina (eelgrass) to elucidate the molecular genetic basis of adaptation to environmental extremes. We compared the tentative unigene (TUG) frequencies of libraries derived from leaf and meristematic tissue from a control situation with two experimentally imposed temperature stress conditions and found that TUG composition is markedly different among these conditions (all P < 0.0001). Under heat stress, we find that 63 TUGs are differentially expressed (d.e.) at 25 degrees C compared with lower, no-stress condition temperatures (4 degrees C and 17 degrees C). Approximately one-third of d.e. eelgrass genes were characteristic for the stress response of the terrestrial plant model Arabidopsis thaliana. The changes in gene expression suggest complex photosynthetic adjustments among light-harvesting complexes, reaction center subunits of photosystem I and II, and components of the dark reaction. Heat shock encoding proteins and reactive oxygen scavengers also were identified, but their overall frequency was too low to perform statistical tests. In all conditions, the most abundant transcript (3-15%) was a putative metallothionein gene with unknown function. We also find evidence that heat stress may translate to enhanced infection by protists. A total of 210 TUGs contain one or more microsatellites as potential candidates for gene-linked genetic markers. Data are publicly available in a user-friendly database at http://www.uni-muenster.de/Evolution/ebb/Services/zostera .

  17. Indirect effects of predators control herbivore richness and abundance in a benthic eelgrass (Zostera marina) mesograzer community.

    PubMed

    Amundrud, Sarah L; Srivastava, Diane S; O'Connor, Mary I

    2015-07-01

    Herbivore communities can be sensitive to changes in predator pressure (top-down effects) and resource availability (bottom-up effects) in a wide range of systems. However, it remains unclear whether such top-down and bottom-up effects reflect direct impacts of predators and/or resources on herbivores, or are indirect, reflecting altered interactions among herbivore species. We quantified direct and indirect effects of bottom-up and top-down processes on an eelgrass (Zostera marina) herbivore assemblage. In a field experiment, we factorially manipulated water column nutrients (with Osmocote(™) slow-release fertilizer) and predation pressure (with predator exclusion cages) and measured the effects on herbivore abundance, richness and beta diversity. We examined likely mechanisms of community responses by statistically exploring the response of individual herbivore species to trophic manipulations. Predators increased herbivore richness and total abundance, in both cases through indirect shifts in community composition. Increases in richness occurred through predator suppression of common gammarid amphipod species (Monocorophium acherusicum and Photis brevipes), permitting the inclusion of rarer gammarid species (Aoroides columbiae and Pontogeneia rostrata). Increased total herbivore abundance reflected increased abundance of a caprellid amphipod species (Caprella sp.), concurrent with declines in the abundance of other common species. Furthermore, predators decreased beta diversity by decreasing variability in Caprella sp. abundance among habitat patches. Osmocote(™) fertilization increased nutrient concentrations locally, but nutrients dissipated to background levels within 3 m of the fertilizer. Nutrient addition weakly affected the herbivore assemblage, not affecting richness and increasing total abundance by increasing one herbivore species (Caprella sp.). Nutrient addition did not affect beta diversity. We demonstrated that assemblage-level effects of

  18. Soil and Rhizosphere Associated Fungi in Gray Mangroves (Avicennia marina) from the Red Sea — A Metagenomic Approach

    PubMed Central

    Simões, Marta Filipa; Antunes, André; Ottoni, Cristiane A.; Amini, Mohammad Shoaib; Alam, Intikhab; Alzubaidy, Hanin; Mokhtar, Noor-Azlin; Archer, John A.C.; Bajic, Vladimir B.

    2015-01-01

    Covering a quarter of the world’s tropical coastlines and being one of the most threatened ecosystems, mangroves are among the major sources of terrestrial organic matter to oceans and harbor a wide microbial diversity. In order to protect, restore, and better understand these ecosystems, researchers have extensively studied their microbiology, yet few surveys have focused on their fungal communities. Our lack of knowledge is even more pronounced for specific fungal populations, such as the ones associated with the rhizosphere. Likewise, the Red Sea gray mangroves (Avicennia marina) remain poorly characterized, and understanding of their fungal communities still relies on cultivation-dependent methods. In this study, we analyzed metagenomic datasets from gray mangrove rhizosphere and bulk soil samples collected in the Red Sea coast, to obtain a snapshot of their fungal communities. Our data indicated that Ascomycota was the dominant phylum (76%–85%), while Basidiomycota was less abundant (14%–24%), yet present in higher numbers than usually reported for such environments. Fungal communities were more stable within the rhizosphere than within the bulk soil, both at class and genus level. This finding is consistent with the intrinsic patchiness in soil sediments and with the selection of specific microbial communities by plant roots. Our study indicates the presence of several species on this mycobiome that were not previously reported as mangrove-associated. In particular, we detected representatives of several commercially-used fungi, e.g., producers of secreted cellulases and anaerobic producers of cellulosomes. These results represent additional insights into the fungal community of the gray mangroves of the Red Sea, and show that they are significantly richer than previously reported. PMID:26549842

  19. Desiccation Risk Drives the Spatial Ecology of an Invasive Anuran (Rhinella marina) in the Australian Semi-Desert

    PubMed Central

    Tingley, Reid; Shine, Richard

    2011-01-01

    Some invasive species flourish in places that impose challenges very different from those faced in their native geographic ranges. Cane toads (Rhinella marina) are native to tropical and subtropical habitats of South and Central America, but have colonised extremely arid regions over the course of their Australian invasion. We radio-tracked 44 adult cane toads at a semi-arid invasion front to investigate how this invasive anuran has managed to expand its geographic range into arid areas that lie outside of its native climatic niche. As predicted from their low physiological control over rates of evaporative water loss, toads selected diurnal shelter sites that were consistently cooler and damper (and thus, conferred lower water loss rates) than nearby random sites. Desiccation risk also had a profound influence on rates of daily movement. Under wet conditions, toads that were far from water moved further between shelter sites than did conspecifics that remained close to water, presumably in an attempt to reach permanent water sources. However, this relationship was reversed under dry conditions, such that only toads that were close to permanent water bodies made substantial daily movements. Toads that were far from water bodies also travelled along straighter paths than did conspecifics that generally remained close to water. Thus, behavioural flexibility—in particular, an ability to exploit spatial and temporal heterogeneity in the availability of moist conditions—has allowed this invasive anuran to successfully colonize arid habitats in Australia. This finding illustrates that risk assessment protocols need to recognise that under some circumstances an introduced species may be able to thrive in conditions far removed from any that it experiences in its native range. PMID:22043300

  20. A Patchy Growth via Successive and Simultaneous Cambia: Key to Success of the Most Widespread Mangrove Species Avicennia marina?

    PubMed Central

    Schmitz, Nele; Robert, Elisabeth M. R.; Verheyden, Anouk; Kairo, James Gitundu; Beeckman, Hans; Koedam, Nico

    2008-01-01

    Background and Aims Secondary growth via successive cambia has been intriguing researchers for decades. Insight into the mechanism of growth layer formation is, however, limited to the cellular level. The present study aims to clarify secondary growth via successive cambia in the mangrove species Avicennia marina on a macroscopic level, addressing the formation of the growth layer network as a whole. In addition, previously suggested effects of salinity on growth layer formation were reconsidered. Methods A 1-year cambial marking experiment was performed on 80 trees from eight sites in two mangrove forests in Kenya. Environmental (soil water salinity and nutrients, soil texture, inundation frequency) and tree characteristics (diameter, height, leaf area index) were recorded for each site. Both groups of variables were analysed in relation to annual number of growth layers, annual radial increment and average growth layer width of stem discs. Key Results Between trees of the same site, the number of growth layers formed during the 1-year study period varied from only part of a growth layer up to four growth layers, and was highly correlated to the corresponding radial increment (0–5 mm year–1), even along the different sides of asymmetric stem discs. The radial increment was unrelated to salinity, but the growth layer width decreased with increasing salinity and decreasing tree height. Conclusions A patchy growth mechanism was proposed, with an optimal growth at distinct moments in time at different positions around the stem circumference. This strategy creates the opportunity to form several growth layers simultaneously, as observed in 14 % of the studied trees, which may optimize tree growth under favourable conditions. Strong evidence was provided for a mainly endogenous trigger controlling cambium differentiation, with an additional influence of current environmental conditions in a trade-off between hydraulic efficiency and mechanical stability. PMID

  1. Both chlorophylls a and d are essential for the photochemistry in photosystem II of the cyanobacteria, Acaryochloris marina.

    PubMed

    Schlodder, Eberhard; Cetin, Marianne; Eckert, Hann-Jörg; Schmitt, Franz-Josef; Barber, James; Telfer, Alison

    2007-06-01

    We have measured the flash-induced absorbance difference spectrum attributed to the formation of the secondary radical pair, P(+)Q(-), between 270 nm and 1000 nm at 77 K in photosystem II of the chlorophyll d containing cyanobacterium, Acaryochloris marina. Despite the high level of chlorophyll d present, the flash-induced absorption difference spectrum of an approximately 2 ms decay component shows a number of features which are typical of the difference spectrum seen in oxygenic photosynthetic organisms containing no chlorophyll d. The spectral shape in the near-UV indicates that a plastoquinone is the secondary acceptor molecule (Q(A)). The strong C-550 change at 543 nm confirms previous reports that pheophytin a is the primary electron acceptor. The bleach at 435 nm and increase in absorption at 820 nm indicates that the positive charge is stabilized on a chlorophyll a molecule. In addition a strong electrochromic band shift, centred at 723 nm, has been observed. It is assigned to a shift of the Qy band of the neighbouring accessory chlorophyll d, Chl(D1). It seems highly likely that it accepts excitation energy from the chlorophyll d containing antenna. We therefore propose that primary charge separation is initiated from this chlorophyll d molecule and functions as the primary electron donor. Despite its lower excited state energy (0.1 V less), as compared to chlorophyll a, this chlorophyll d molecule is capable of driving the plastoquinone oxidoreductase activity of photosystem II. However, chlorophyll a is used to stabilize the positive charge and ultimately to drive water oxidation.

  2. Evidence of eelgrass (Zostera marina) seed dispersal by northern diamondback terrapin (Malaclemys terrapin terrapin) in lower Chesapeake Bay.

    PubMed

    Tulipani, Diane C; Lipcius, Romuald N

    2014-01-01

    The initial discovery in May 2009 of eelgrass (Zostera marina) seeds in fecal samples of wild-caught northern diamondback terrapins (Malaclemys terrapin terrapin) was the first field evidence of eelgrass seed ingestion in this species. This finding suggested the potential of terrapins as seed dispersers in eelgrass beds, which we sampled for two additional years (2010 and 2011). Seeds were only found in feces of terrapins captured prior to June 8 in all three years, coinciding with eelgrass seed maturation and release. Numbers of seeds in terrapin feces varied annually and decreased greatly in 2011 after an eelgrass die off in late 2010. The condition of seeds in terrapin feces was viable-mature, germinated, damaged, or immature. Of terrapins captured during time of seed release, 97% were males and juvenile females, both of which had head widths <30 mm. The fraction of individuals with ingested seeds was 33% for males, 35% for small females, and only 6% for large (mature) females. Probability of seed ingestion decreased exponentially with increasing terrapin head width; only males and small females (head width <30 mm) were likely to be vectors of seed dispersal. The characteristic that diamondback terrapins have well-defined home ranges allowed us to estimate the number of terrapins potentially dispersing eelgrass seeds annually. In seagrass beds of the Goodwin Islands region (lower York River, Virginia), there were 559 to 799 terrapins, which could disperse between 1,341 and 1,677 eelgrass seeds annually. These would represent a small proportion of total seed production within a single seagrass bed. However, based on probable home range distances, terrapins can easily traverse eelgrass meadow boundaries, thereby dispersing seeds beyond the bed of origin. Given the relatively short dispersion distance of eelgrass seeds, the diamondback terrapin may be a major source of inter-bed seed dispersal and genetic diversity. PMID:25072473

  3. Hydrochemical features of groundwater in a coastal gypsum karst (Marina di Lesina, Gargano, Southern Italy) in relation to tides

    NASA Astrophysics Data System (ADS)

    Fidelibus, Maria Dolores; Campana, Claudia

    2014-05-01

    As part of a complex monitoring aimed at collecting suitable data for conceptual and numerical modelling of the coastal gypsum karst of Marina di Lesina (Gargano, Southern Italy), 64 groundwater samples were collected during three surveys at different depths from 9 monitoring wells aligned along two transects. The transects, perpendicular to the Acquarotta canal, are less of 1 Km long. The canal is directly connected to the sea and to the Lesina Lagoon and behaves as an oscillating border following sea tides. The sampling campaigns were carried out concurrently to phases of increasing, decreasing, and low tide and provide different frameworks of the chemical composition of ground waters. TDS (Total Dissolved Solids) of ground water samples ranges from 0.2 g/l to 35 g/l and increases generally along the flow lines towards the canal, and downward. The concentrations of the major ions deviate from theoretical ones defined by non-reactive mixing lines, which have as saline end-member either standard seawater or local seawater sampled offshore.Owing to the multi-component character of the hydrochemical system, the cation concentrations are controlled by competition among concurrent water-rock interaction processes that overlap to non-reactive freshwater-saltwater (FW-SW) mixing, being even triggered and/or enhanced by the same mixing, with feedback loops: gypsum and calcite dissolution, ion exchange (with direction depending on hydrodynamic conditions mainly driven by tides, and justified due to the presence of clay in the gypsum bedrock), and dedolomitization. The geochemical study also highlights the involvement of saline ground waters belonging to regional circuits that develop in the huge Mesozoic carbonate basement. The study highlights that in the saturated thickness of the gypsum coastal aquifer closer to the coast, the hydrochemical system is extremely reactive and strongly influenced by the different groundwater hydraulic conditions induced by the tide phases.

  4. The distribution of some metallic elements in eelgrass ( Zostera marina L.) and sediment in the Limfjord, Denmark

    NASA Astrophysics Data System (ADS)

    Brix, Hans; Lyngby, Jens Erik

    1983-04-01

    The distribution of Ca, Cd, Cu, Fe, K, Mg, Mn, Na, Pb and Zn in different parts of eelgrass ( Zostera marina L.) and sediment (0-25 cm depth) collected at three locations in the Limfjord, Denmark, were investigated. Eelgrass plants were divided into roots, rhizomes, stems and leaves according to age, and the metal content in each fraction was determined. The distribution pattern of the metals could be divided into separate groups according to the following criteria: (i) the age-dependent distribution pattern of the metals in the leaves (the concentrations of Ca, Cd, Fe, Mg, Mn, Na, Pb and Zn increased with the age of the leaves; the concentrations of Cu and K decreased with age); (ii) the concentration level of the metals in the roots compared to that in the rhizomes (Ca, Cd, Cu, Fe, Mn, Pb and Zn concentrations were highest in the roots; K, Mg and Na concentrations were highest in rhizomes); (iii) the concentration level of the metals in the 'stem'-fraction compared to that in the youngest leaf (the concentration of Fe, K, Mg, Na and Pb were highest in the 'stem'-fraction; the concentrations of Ca, Cd, Mn and Zn were highest in the youngest leaf). The distribution pattern of the metals are discussed, especially in relation to the gross morphology of eelgrass. Finally, the relatively large quantity of metals tied up in the eelgrass biomass at the three localities indicated that the eelgrass beds most likely exerted a significant role in the metal cycling in the Limfjord.

  5. Pollination in the marine realm: microsatellites reveal high outcrossing rates and multiple paternity in eelgrass Zostera marina.

    PubMed

    Reusch, T B

    2000-11-01

    The mating system was examined in two annual populations of eelgrass (Zostera marina), a marine angiosperm displaying subaqueous pollination. Multilocus genotyping using microsatellite DNA markers allowed the assessment of the pollen source based on single progeny as units of observation. Outcrossing was detectable by the presence of non-maternal alleles at one or more of the loci. In outcrossing cases, three microsatellite alleles were present in unripe seeds, consisting of both maternal alleles and the paternal allele composing the triploid primary endosperm. In ripe seeds, only the diploid embryonal genotype was amplifiable by PCR. Two intertidal populations situated in the German Wadden Sea were almost entirely outcrossing (t +/- SE 0.96 +/- 0.03, N=60 and 0.97 +/- 0.029, N=37). Because of the high polymorphism displayed by the eight chosen microsatellites, representing a total of 69 and 76 alleles, the likelihood of erroneously inferring selfing was small (alpha=0.0026 and 0.0007). In order to study the correlation of paternity, the coefficient of relatedness was determined within sibships. Relatedness (r +/- SE) was calculated as 0.357 +/- 0.059 and 0.343 +/- 0.037, indicating multiple paternities within inflorescences. Small amounts of tissue (< or = 0.1 mg) such as the developing seeds of recently fertilized ovules, were sufficient for PCR-amplification. Hence, PCR-based methods, such as multilocus microsatellite genotyping, allow the detection of pollen origin early in the development of progeny. They will be useful to distinguish postfertilization processes such as selective abortion and germination from other prefertilization determinants of plant mating systems.

  6. Decline in eelgrass ( Zostera marina L.) in Long Island Sound near Millstone Point, Connecticut (USA) unrelated to thermal input

    NASA Astrophysics Data System (ADS)

    Keser, Milan; Swenarton, John T.; Vozarik, Joseph M.; Foertch, James F.

    2003-02-01

    Eelgrass ( Zostera marina L.) shoot density, seed-bearing shoot abundance, shoot length, and standing stock biomass were monitored during summer months from 1985 to 2000 at three locations in eastern Long Island Sound (LIS) near Millstone Power Station (MPS), Waterford, Connecticut, USA. Short-term declines in eelgrass abundance were directly associated with fouling and overgrowth of eelgrass on two occasions; once by blue mussels ( Mytilus edulis) and once by a bloom of green algae ( Cladophora spp.). Analysis of long-term trends indicated some degree of decline in most of the parameters examined at all three areas monitored. The spatial relationship of the long-term eelgrass declines suggests primary causal factors other than the power plant discharge or regional climate change. Two populations to the east of MPS and near the fringes of the thermal plume (<1.5 km from the MPS discharge to LIS) exhibited only slight declines over the 16-y study period and thermal input from MPS to these sites was minimal (<1 °C above ambient conditions). By comparison, heavy eelgrass losses were documented in the Niantic River, located >2 km from the power plant thermal plume. Die-offs of entire individual eelgrass study beds in the Niantic River were observed on five separate occasions during the study with no sign of recovery. While the causes were not determined, anthropogenic influences such as nutrient loading from surface run-off and groundwater sources may have contributed to observed declines. The Niantic River has a more restricted tidal inlet and is closer to sources of nutrient enrichment than Jordan Cove. Historically, eelgrass has ranged to far western reaches of LIS, but over the last century has become restricted to the easternmost third of the Connecticut coastline due to nutrient loading and eutrophication of the western portions. This study suggests that the west-to-east declining trend in eelgrass distribution in LIS may be further progressing.

  7. High mortality of Zostera marina under high temperature regimes but minor effects of the invasive macroalgae Gracilaria vermiculophylla

    NASA Astrophysics Data System (ADS)

    Höffle, H.; Thomsen, M. S.; Holmer, M.

    2011-03-01

    The present study tested for density-dependent effects of the invasive drift macroalgae Gracilaria vermiculophylla (Ohmi) Papenfuss on growth and survival of the native eelgrass, Zostera marina L., under different temperature levels. Three weeks laboratory experiments were conducted in Odense, Denmark, combining three algae densities (control, low 1.9 kg WW m -2, high 4.5 kg WW m -2) with typical Danish summer temperatures (18 °C) and elevated temperatures (21 °C and 27 °C). There was a significant effect of temperature on shoot survival with on average 68% mortality in the high temperature treatment but almost no mortality at the two lower temperatures. The higher mortality was probably caused by high sulphide levels in the sediment pore water (0.6 mmol l -1 at 18 °C compared to 3.7 mmol l -1 at 27 °C). Above-ground growth of the surviving shoots was also significantly affected by temperature, with leaf elongation rates being negatively affected, while the leaf plastochrone interval increased. Relative growth rate was significantly higher at 21 °C than at 18 °C or 27 °C, whereas rhizome elongation was significantly lowest at 27 °C. Elemental sulphur content in the plant tissues increased significantly with temperature and was up to 34 times higher (S 0 in rhizomes) at 27 °C compared to the lower temperatures. In contrast to the temperature effects, cover by G. vermiculophylla did not cause significant effects on any seagrass responses. However, there was a (non-significant) negative effect of algal cover at the highest temperature, where the seagrass is already stressed. The latter results suggest that more studies should test for interaction effects between temperature and other anthropogenic stressors given that temperature is predicted to increase in the near future.

  8. Evidence of eelgrass (Zostera marina) seed dispersal by northern diamondback terrapin (Malaclemys terrapin terrapin) in lower Chesapeake Bay.

    PubMed

    Tulipani, Diane C; Lipcius, Romuald N

    2014-01-01

    The initial discovery in May 2009 of eelgrass (Zostera marina) seeds in fecal samples of wild-caught northern diamondback terrapins (Malaclemys terrapin terrapin) was the first field evidence of eelgrass seed ingestion in this species. This finding suggested the potential of terrapins as seed dispersers in eelgrass beds, which we sampled for two additional years (2010 and 2011). Seeds were only found in feces of terrapins captured prior to June 8 in all three years, coinciding with eelgrass seed maturation and release. Numbers of seeds in terrapin feces varied annually and decreased greatly in 2011 after an eelgrass die off in late 2010. The condition of seeds in terrapin feces was viable-mature, germinated, damaged, or immature. Of terrapins captured during time of seed release, 97% were males and juvenile females, both of which had head widths <30 mm. The fraction of individuals with ingested seeds was 33% for males, 35% for small females, and only 6% for large (mature) females. Probability of seed ingestion decreased exponentially with increasing terrapin head width; only males and small females (head width <30 mm) were likely to be vectors of seed dispersal. The characteristic that diamondback terrapins have well-defined home ranges allowed us to estimate the number of terrapins potentially dispersing eelgrass seeds annually. In seagrass beds of the Goodwin Islands region (lower York River, Virginia), there were 559 to 799 terrapins, which could disperse between 1,341 and 1,677 eelgrass seeds annually. These would represent a small proportion of total seed production within a single seagrass bed. However, based on probable home range distances, terrapins can easily traverse eelgrass meadow boundaries, thereby dispersing seeds beyond the bed of origin. Given the relatively short dispersion distance of eelgrass seeds, the diamondback terrapin may be a major source of inter-bed seed dispersal and genetic diversity.

  9. Evidence of Eelgrass (Zostera marina) Seed Dispersal by Northern Diamondback Terrapin (Malaclemys terrapin terrapin) in Lower Chesapeake Bay

    PubMed Central

    Tulipani, Diane C.; Lipcius, Romuald N.

    2014-01-01

    The initial discovery in May 2009 of eelgrass (Zostera marina) seeds in fecal samples of wild-caught northern diamondback terrapins (Malaclemys terrapin terrapin) was the first field evidence of eelgrass seed ingestion in this species. This finding suggested the potential of terrapins as seed dispersers in eelgrass beds, which we sampled for two additional years (2010 and 2011). Seeds were only found in feces of terrapins captured prior to June 8 in all three years, coinciding with eelgrass seed maturation and release. Numbers of seeds in terrapin feces varied annually and decreased greatly in 2011 after an eelgrass die off in late 2010. The condition of seeds in terrapin feces was viable-mature, germinated, damaged, or immature. Of terrapins captured during time of seed release, 97% were males and juvenile females, both of which had head widths <30 mm. The fraction of individuals with ingested seeds was 33% for males, 35% for small females, and only 6% for large (mature) females. Probability of seed ingestion decreased exponentially with increasing terrapin head width; only males and small females (head width <30 mm) were likely to be vectors of seed dispersal. The characteristic that diamondback terrapins have well-defined home ranges allowed us to estimate the number of terrapins potentially dispersing eelgrass seeds annually. In seagrass beds of the Goodwin Islands region (lower York River, Virginia), there were 559 to 799 terrapins, which could disperse between 1,341 and 1,677 eelgrass seeds annually. These would represent a small proportion of total seed production within a single seagrass bed. However, based on probable home range distances, terrapins can easily traverse eelgrass meadow boundaries, thereby dispersing seeds beyond the bed of origin. Given the relatively short dispersion distance of eelgrass seeds, the diamondback terrapin may be a major source of inter-bed seed dispersal and genetic diversity. PMID:25072473

  10. Soil and Rhizosphere Associated Fungi in Gray Mangroves (Avicennia marina) from the Red Sea--A Metagenomic Approach.

    PubMed

    Simões, Marta Filipa; Antunes, André; Ottoni, Cristiane A; Amini, Mohammad Shoaib; Alam, Intikhab; Alzubaidy, Hanin; Mokhtar, Noor-Azlin; Archer, John A C; Bajic, Vladimir B

    2015-10-01

    Covering a quarter of the world's tropical coastlines and being one of the most threatened ecosystems, mangroves are among the major sources of terrestrial organic matter to oceans and harbor a wide microbial diversity. In order to protect, restore, and better understand these ecosystems, researchers have extensively studied their microbiology, yet few surveys have focused on their fungal communities. Our lack of knowledge is even more pronounced for specific fungal populations, such as the ones associated with the rhizosphere. Likewise, the Red Sea gray mangroves (Avicennia marina) remain poorly characterized, and understanding of their fungal communities still relies on cultivation-dependent methods. In this study, we analyzed metagenomic datasets from gray mangrove rhizosphere and bulk soil samples collected in the Red Sea coast, to obtain a snapshot of their fungal communities. Our data indicated that Ascomycota was the dominant phylum (76%-85%), while Basidiomycota was less abundant (14%-24%), yet present in higher numbers than usually reported for such environments. Fungal communities were more stable within the rhizosphere than within the bulk soil, both at class and genus level. This finding is consistent with the intrinsic patchiness in soil sediments and with the selection of specific microbial communities by plant roots. Our study indicates the presence of several species on this mycobiome that were not previously reported as mangrove-associated. In particular, we detected representatives of several commercially-used fungi, e.g., producers of secreted cellulases and anaerobic producers of cellulosomes. These results represent additional insights into the fungal community of the gray mangroves of the Red Sea, and show that they are significantly richer than previously reported.

  11. Acute Thermal Stressor Increases Glucocorticoid Response but Minimizes Testosterone and Locomotor Performance in the Cane Toad (Rhinella marina)

    PubMed Central

    Narayan, Edward J.; Hero, Jean-Marc

    2014-01-01

    Climatic warming is a global problem and acute thermal stressor in particular could be considered as a major stressor for wildlife. Cane toads (Rhinella marina) have expanded their range into warmer regions of Australia and they provide a suitable model species to study the sub-lethal impacts of thermal stressor on the endocrine physiology of amphibians. Presently, there is no information to show that exposure to an acute thermal stressor could initiate a physiological stress (glucocorticoid) response and secondly, the possible effects on reproductive hormones and performance. Answering these questions is important for understanding the impacts of extreme temperature on amphibians. In this study, we experimented on cane toads from Queensland, Australia by acclimating them to mildly warm temperature (25°C) and then exposing to acute temperature treatments of 30°, 35° or 40°C (hypothetical acute thermal stressors). We measured acute changes in the stress hormone corticosterone and the reproductive hormone testosterone using standard capture and handling protocol and quantified the metabolites of both hormones non-invasively using urinary enzyme-immunoassays. Furthermore, we measured performance trait (i.e. righting response score) in the control acclimated and the three treatment groups. Corticosterone stress responses increased in all toads during exposure to an acute thermal stressor. Furthermore, exposure to a thermal stressor also decreased testosterone levels in all toads. The duration of the righting response (seconds) was longer for toads that were exposed to 40°C than to 30°, 35° or 25°C. The increased corticosterone stress response with increased intensity of the acute thermal stressor suggests that the toads perceived this treatment as a stressor. Furthermore, the results also highlight a potential trade-off with performance and reproductive hormones. Ultimately, exposure acute thermal stressors due to climatic variability could impact amphibians at

  12. An examination of photoacclimatory responses of Zostera marina transplants along a depth gradient for transplant-site selection in a disturbed estuary

    NASA Astrophysics Data System (ADS)

    Li, Wen-Tao; Kim, Seung Hyeon; Kim, Jae Woo; Kim, Jong-Hyeob; Lee, Kun-Seop

    2013-02-01

    Growth and photosynthetic responses of Zostera marina transplants along a depth gradient were examined to determine appropriate transplanting areas for seagrass restoration. Seagrass Z. marina was once widely distributed in the Taehwa River estuary in southeastern Korea, but has disappeared since the 1960s due to port construction and large scale pollutant inputs from upstream industrial areas. Recently, water quality has been considerably improved as a result of effective sewage treatment, and the local government is attempting to restore Z. marina to the estuary. For seagrass restoration in this estuary, a pilot transplantation trial of Z. marina at three water depths (shallow: 0.5 m; intermediate: 1.5 m; deep: 2.5 m relative to MLLW) was conducted in November 2008. The transplant shoot density increased gradually at the intermediate and deep sites, whereas the transplants at the shallow site disappeared after 3 months. To find the optimal transplantation locations in this estuary, the growth and photosynthetic responses of the transplants along a depth gradient were examined for approximately 4 months following transplantation in March 2009. In the 2009 experimental transplantation trial, shoot density of transplants at the shallow site was significantly higher than those at the intermediate and deep sites during the first 3 months following transplantation, but rapidly decreased approximately 4 months after transplantation. The chlorophyll content, photosynthetic efficiency (α), and maximum quantum yield (Fv/Fm) of the transplants were significantly higher at the deep site than at the shallow site. Shoot size, biomass and leaf productivity were also significantly higher at the deep site than at the shallow site. Although underwater irradiance was significantly lower at the deep site than at the shallow site, transplants at the deep site were morphologically and physiologically acclimated to the low light. Transplants at the shallow site exhibited high

  13. Spatial and diurnal distribution of invertebrate and fish fauna of a Zostera marina bed and nearby unvegetated sediments in Damariscotta River, Maine (USA)

    NASA Astrophysics Data System (ADS)

    Mattila, Johanna; Chaplin, Glen; Eilers, Michele R.; Heck, Kenneth L.; O'Neal, Jonathan P.; Valentine, John F.

    1999-06-01

    Fish, epibenthos and macroinfauna were collected in a Zostera marina bed and nearby unvegetated sediments in the estuary of the Damariscotta River, on the mid-coast of Maine. Samples of epibenthic fauna and fish were collected at low tides both during day and night, and samples of infauna at low tides during the day. The mean density of Zostera shoots in the study area was 335 m -2. Abundance and species number of fish were greater at night than during the day and greater in eelgrass beds ( Z. marina) than in unvegetated habitats. Daytime fish collections were dominated by Atlantic silversides ( Medinia medinia), while juvenile winter flounder ( Pseudopleuronectes americanus) dominated night collections. Also Zostera-associated epifaunal abundances and number of species were significantly higher at night than during the day. Mysis stenolepis, Idotea balthica and Littorina obtusata were dominant species in the epifauna samples. Of the total of 37 invertebrate species encountered, only five occurred both in the infaunal and epifaunal samples. Nineteen different taxa were collected from the benthic core samples. The most abundant invertebrate infaunal taxa were sipunculids, the polychaete Nereis virens, and oligochaetes. Infaunal invertebrate abundances and species diversity were significantly higher in eelgrass beds than in unvegetated sediments. The abundance and number of species of benthic invertebrates were also positively correlated to seagrass biomass. Community diversity values ( H') were relatively low but fit well in the general pattern of decreasing diversity towards northern latitudes.

  14. An economical non-destructive method for estimating eelgrass, Zostera marina (Potamogetonaceae) leaf growth rates: formal development and use in northwestern Baja California.

    PubMed

    Solana-Arellano, Elena; Echavarria-Heras, Héctor; Franco-Vizcaíno, Ernesto

    2008-09-01

    Seagrass beds provide much of the primary production in estuaries; host many fishes and fish larvae, and abate erosion. The present study presents original analytical methods for estimating mean leaf-growth rates of eelgrass (Zostera marina). The method was calibrated by using data collected in a Z. marina meadow at Punta Banda estuary in Baja California, Mexico. The analytical assessments were based on measurements of leaf length and standard regression procedures. We present a detailed explanation of the formal procedures involved in the derivation of these analytical methods. The measured daily leaf-growth rate was 10.9 mm d(-1) leaf(-1). The corresponding value projected by our method was 10.2 mm d(-1) leaf(-). The associated standard errors were of 0.53 and 0.56 mm d(-1) leaf(-1) respectively. The method was validated by projecting leaf-growth rates from an independent data set, which gave consistent results. The use of the method to obtain the mean leaf growth rate of a transplanted plot is also illustrated. Comparison of our leaf-growth data with previously reported assessments show the significant forcing of sea-surface temperature on eelgrass leaf dynamics. The formal constructs provided here are of general scope and can be applied to equivalent eelgrass data sets in a straightforward manner. PMID:19419023

  15. Red-shifted red/green-type cyanobacteriochrome AM1_1870g3 from the chlorophyll d-bearing cyanobacterium Acaryochloris marina.

    PubMed

    Narikawa, Rei; Fushimi, Keiji; Ni-Ni-Win; Ikeuchi, Masahiko

    2015-05-29

    Cyanobacteriochromes (CBCRs) are diverse photoreceptors that are found only from cyanobacteria and cover wide range of light qualities. CBCRs are divided into two types regarding the chromophore species they contain: phycocyanobilin (PCB) and phycoviolobilin. Red/green-type CBCRs are widely distributed subfamily among the PCB-binding CBCRs and photoconvert between a red-absorbing thermostable form and a green-absorbing metastable form. Our recent study discovered that a red/green-type CBCR, AM1_1557g2, from a cyanobacterium Acaryochloris marina covalently binds not only PCB but also biliverdin (BV). BV-binding AM1_1557g2 photoconverts between a far-red absorbing form and an orange-absorbing form. We report, herein, that another red/green-type CBCR, AM1_1870g3, from the cyanobacterium A. marina also bound both PCB and BV. PCB- and BV-binding ones showed red/green and far-red/orange reversible photoconversions, respectively. Unexpectedly, absorbing wavelengths are 10-20 nm red-shifted compared with those of AM1_1557g2. These red-shifted characteristics may be useful for optogenetic light switches that work in various organisms. PMID:25892514

  16. Characterisation of sulphide-bearing waste-rock dumps using electrical resistivity imaging: the case study of the Rio Marina mining district (Elba Island, Italy).

    PubMed

    Mele, Mauro; Servida, Diego; Lupis, Domenico

    2013-07-01

    Sulphide-bearing mine dumps are potential sources of pollution when acid mine drainage (AMD) occurs. Because the generation of AMD depends on the volume and composition of waste materials, their characterisation is crucial for the evaluation of geochemical hazards and for the design of remediation strategies to minimise their environmental impact. In this paper, a cost-effective strategy for the characterisation of an inactive mine dump in the Rio Marina mining district (Elba Island, Italy) using earth resistivity imaging (ERI) is presented. As no information regarding the nature of waste rocks is found in reports for the mine, five ERI profiles were acquired at the top of the waste pile. The results show that waste rocks are heterogeneous with a maximum thickness of 30 m. Due to the large amounts of dispersed sulphide minerals, the waste rocks are characterised by an electrically conductive geophysical signature in comparison to the surrounding resistive metamorphic bedrock. A geostatistical approach was adopted to estimate the elevation of the edges of the mine dump, and the net volume of the waste rocks was computed through a raster analysis of the elevations of the upper and lower boundaries of the mine dump. High-conductivity anomalies were detected within the core of the mine dump. The integration of the hydrogeological, geochemical and geological framework of the Rio Marina mining district suggests that these anomalies could be a geophysical signature of subsurface regions where AMD is currently generated or stored, thus representing sources of environmental pollution. PMID:23179723

  17. An economical non-destructive method for estimating eelgrass, Zostera marina (Potamogetonaceae) leaf growth rates: formal development and use in northwestern Baja California.

    PubMed

    Solana-Arellano, Elena; Echavarria-Heras, Héctor; Franco-Vizcaíno, Ernesto

    2008-09-01

    Seagrass beds provide much of the primary production in estuaries; host many fishes and fish larvae, and abate erosion. The present study presents original analytical methods for estimating mean leaf-growth rates of eelgrass (Zostera marina). The method was calibrated by using data collected in a Z. marina meadow at Punta Banda estuary in Baja California, Mexico. The analytical assessments were based on measurements of leaf length and standard regression procedures. We present a detailed explanation of the formal procedures involved in the derivation of these analytical methods. The measured daily leaf-growth rate was 10.9 mm d(-1) leaf(-1). The corresponding value projected by our method was 10.2 mm d(-1) leaf(-). The associated standard errors were of 0.53 and 0.56 mm d(-1) leaf(-1) respectively. The method was validated by projecting leaf-growth rates from an independent data set, which gave consistent results. The use of the method to obtain the mean leaf growth rate of a transplanted plot is also illustrated. Comparison of our leaf-growth data with previously reported assessments show the significant forcing of sea-surface temperature on eelgrass leaf dynamics. The formal constructs provided here are of general scope and can be applied to equivalent eelgrass data sets in a straightforward manner.

  18. Sodium-Dependent Nitrate Transport at the Plasma Membrane of Leaf Cells of the Marine Higher Plant Zostera marina L.1

    PubMed Central

    García-Sánchez, María J.; Jaime, M. Paz; Ramos, Alberto; Sanders, Dale; Fernández, José A.

    2000-01-01

    NO3− is present at micromolar concentrations in seawater and must be absorbed by marine plants against a steep electrochemical potential difference across the plasma membrane. We studied NO3− transport in the marine angiosperm Zostera marina L. to address the question of how NO3− uptake is energized. Electrophysiological studies demonstrated that micromolar concentrations of NO3− induced depolarizations of the plasma membrane of leaf cells. Depolarizations showed saturation kinetics (Km = 2.31 ± 0.78 μm NO3−) and were enhanced in alkaline conditions. The addition of NO3− did not affect the membrane potential in the absence of Na+, but depolarizations were restored when Na+ was resupplied. NO3−-induced depolarizations at increasing Na+ concentrations showed saturation kinetics (Km = 0.72 ± 0.18 mm Na+). Monensin, an ionophore that dissipates the Na+ electrochemical potential, inhibited NO3−-evoked depolarizations by 85%, and NO3− uptake (measured by depletion from the external medium) was stimulated by Na+ ions and by light. Our results strongly suggest that NO3− uptake in Z. marina is mediated by a high-affinity Na+-symport system, which is described here (for the first time to our knowledge) in an angiosperm. Coupling the uptake of NO3− to that of Na+ enables the steep inwardly-directed electrochemical potential for Na+ to drive net accumulation of NO3− within leaf cells. PMID:10712552

  19. Characterisation of sulphide-bearing waste-rock dumps using electrical resistivity imaging: the case study of the Rio Marina mining district (Elba Island, Italy).

    PubMed

    Mele, Mauro; Servida, Diego; Lupis, Domenico

    2013-07-01

    Sulphide-bearing mine dumps are potential sources of pollution when acid mine drainage (AMD) occurs. Because the generation of AMD depends on the volume and composition of waste materials, their characterisation is crucial for the evaluation of geochemical hazards and for the design of remediation strategies to minimise their environmental impact. In this paper, a cost-effective strategy for the characterisation of an inactive mine dump in the Rio Marina mining district (Elba Island, Italy) using earth resistivity imaging (ERI) is presented. As no information regarding the nature of waste rocks is found in reports for the mine, five ERI profiles were acquired at the top of the waste pile. The results show that waste rocks are heterogeneous with a maximum thickness of 30 m. Due to the large amounts of dispersed sulphide minerals, the waste rocks are characterised by an electrically conductive geophysical signature in comparison to the surrounding resistive metamorphic bedrock. A geostatistical approach was adopted to estimate the elevation of the edges of the mine dump, and the net volume of the waste rocks was computed through a raster analysis of the elevations of the upper and lower boundaries of the mine dump. High-conductivity anomalies were detected within the core of the mine dump. The integration of the hydrogeological, geochemical and geological framework of the Rio Marina mining district suggests that these anomalies could be a geophysical signature of subsurface regions where AMD is currently generated or stored, thus representing sources of environmental pollution.

  20. Aliikangiella marina gen. nov., sp. nov., a marine bacterium from the culture broth of Picochlorum sp. 122, and proposal of Kangiellaceae fam. nov. in the order Oceanospirillales.

    PubMed

    Wang, Guanghua; Tang, Mingxing; Wu, Huanlian; Dai, Shikun; Li, Tao; Chen, Chenghao; He, Hui; Fan, Jiewei; Xiang, Wenzhou; Li, Xiang

    2015-12-01

    A Gram-stain-negative, non-motile, non-spore-forming, long rod-shaped bacterium, designated strain GYP-15T, was isolated from the culture broth of a marine microalga, Picochloruma sp. 122. Phylogenetic analyses revealed that strain GYP-15T shared 90.6 % 16S rRNA gene sequence similarity with its closest relative, Kangiella aquimarina KCTC 12183T, and represents a distinct phylogenetic lineage in a robust clade consisting of GYP-15T and members of the genera Kangiella and Pleionea in the order Oceanospirillales. Chemotaxonomic and physiological characteristics, including major cellular fatty acids, NaCl tolerance and pattern of carbon source utilization, could also readily distinguish strain GYP-15T from all established genera and species. Thus, it is concluded that strain GYP-15T represents a novel species of a new genus, for which the name Aliikangiella marina gen. nov., sp. nov. is proposed. The type strain of Aliikangiella marina is GYP-15T ( = MCCC 1K01163T = KCTC 42667T). Based on phylogenetic results, 16S rRNA gene signature nucleotide pattern and some physiological characteristics, the three genera Kangiella, Pleionea and Aliikangiella are proposed to make up a novel family, Kangiellaceae fam. nov., in the order Oceanospirillales.

  1. Transport of marked pebbles in short periods of time on a coarse clastic beach (Marina di Pisa, Italy)

    NASA Astrophysics Data System (ADS)

    Bertoni, D.; Ciavola, P.; Grottoli, E.; Sarti, G.

    2012-04-01

    Transport of coarse sediments on coarse clastic beaches still presents aspects that are not fully understood. For instance, there is a generally perceived notion that during fair-weather periods coarse grains hardly move, if not at all. The aim of this experiment is to prove that sediments such as pebbles are subject to significant shift in very short lapses of time and under low energy waves. An artificial coarse clastic beach at Marina di Pisa (Tuscany, Italy) was chosen as study site: Barbarossa beach is 110 m long and is bounded by two groynes. The mean grain size is about 40-to-50 mm. About 80 pebbles were marked by means of the RFID technology, which enables to univocally identify the tracers. The marked pebbles were released along cross-shore transects (one pebble each on the fair-weather berm, on the beachface and on the step crest) on the morning of September 15th, and two recovery campaigns were carried out after 6 and 24 hours from the injection. No particular wave activity was recorded during the time frame of the experiment. After the first recovery campaign, which was performed 6 hours later than the injection, about 94% of the pebbles were detected. After the second recovery campaign, 24 hours later, the recovery rate decreased to 89%. Considering that the technique provides for detection of tracers within 50 cm, the resulting loss of pebbles after so brief spans of time is remarkable. The lack of detection of few tracers implies that the transport rate that they experienced is not negligible. The highest rate of losses was recorded on the beachface, the zone that is subjected the most to waves even under calm conditions. Pebble movement is also confirmed by the fact that tracers detected after the first recovery campaign were not detected once again after the second recovery campaign, and vice versa. The results of the experiment are useful to better define the transport of coarse sediments, verifying that pebbles have to be expected be moving even

  2. Disturbance of eelgrass Zostera marina by commercial mussel Mytilus edulis harvesting in Maine: dragging impacts and habitat recovery

    USGS Publications Warehouse

    Neckles, H.A.; Short, F.T.; Barker, S.; Kopp, B.S.

    2005-01-01

    We studied the effects of commercial harvest of blue mussels Mytilus edulis on eelgrass Zostera marina L. in Maquoit Bay, Maine, USA, at a hierarchy of scales. We used aerial photography, underwater video, and eelgrass population- and shoot-based measurements to quantify dragging impacts within 4 sites that had been disturbed at different times over an approximate 7 yr interval, and to project eelgrass meadow recovery rates. Dragging had disturbed 10% of the eelgrass cover in Maquoit Bay, with dragged sites ranging from 3.4 to 31.8 ha in size. Dragging removed above- and below-ground plant material from the majority of the bottom in the disturbed sites. One year following dragging, eelgrass shoot density, shoot height and total biomass of disturbed sites averaged respectively 2 to 3%, 46 to 61% and < 1% that of the reference sites. Substantial differences in eelgrass biomass persisted between disturbed and reference sites up to 7 yr after dragging. Dragging did not affect physical characteristics of the sediment. The pattern and rate of eelgrass bed recovery depended strongly on initial dragging intensity; areas of relatively light dragging with many remnant eelgrass patches (i.e. patches that were missed by the mussel dredge) showed considerable revegetation in 1 yr. However, by developing recovery trajectories from measurements at sites disturbed in different years, we projected that it would require a mean of 10.6 yr for recovery of eelgrass shoot density within the areas of intense dragging characterizing most of the disturbed sites. A spatial simulation model based on measured rates of lateral patch-expansion (mean 12.5 cm yr(-1)) and new-patch recruitment (mean 0.19 patches m(-2) yr(-1)) yielded a mean bed recovery time of 9 to 11 yr following dragging, depending on initial degree of plant removal. Model simulations suggested that with favorable environmental conditions, eelgrass beds might recover from dragging disturbance in 6 yr; conversely, recovery under

  3. Disturbance of eelgrass Zostera marina by commercial mussel Mytilus edulis harvesting in Maine: Dragging impacts and habitat recovery

    USGS Publications Warehouse

    Neckles, H.A.; Short, F.T.; Barker, S.; Kopp, B.S.

    2005-01-01

    We studied the effects of commercial harvest of blue mussels Mytilus edulis on eelgrass Zostera marina L. in Maquoit Bay, Maine, USA, at a hierarchy of scales. We used aerial photography, underwater video, and eelgrass population- and shoot-based measurements to quantify dragging impacts within 4 sites that had been disturbed at different times over an approximate 7 yr interval, and to project eelgrass meadow recovery rates. Dragging had disturbed 10% of the eelgrass cover in Maquoit Bay, with dragged sites ranging from 3.4 to 31.8 ha in size. Dragging removed above- and belowground plant material from the majority of the bottom in the disturbed sites. One year following dragging, eelgrass shoot density, shoot height and total biomass of disturbed sites averaged respectively 2 to 3 %, 46 to 61 % and <1 % that of the reference sites. Substantial differences in eelgrass biomass persisted between disturbed and reference sites up to 7 yr after dragging. Dragging did not affect physical characteristics of the sediment. The pattern and rate of eelgrass bed recovery depended strongly on initial dragging intensity; areas of relatively light dragging with many remnant eelgrass patches (i.e. patches that were missed by the mussel dredge) showed considerable revegetation in 1 yr. However, by developing recovery trajectories from measurements at sites disturbed in different years, we projected that it would require a mean of 10.6 yr for recovery of eelgrass shoot density within the areas of intense dragging characterizing most of the disturbed sites. A spatial simulation model based on measured rates of lateral patch-expansion (mean 12.5 cm yr-1) and new-patch recruitment (mean 0.19 patches m-2 yr-1) yielded a mean bed recovery time of 9 to 11 yr following dragging, depending on initial degree of plant removal. Model simulations suggested that with favorable environmental conditions, eelgrass beds might recover from dragging disturbance in 6 yr; conversely, recovery under

  4. Disturbance of eelgrass Zostera marina by commercial mussel Mytilus edulis harvesting in Maine: Dragging impacts and habitat recovery

    USGS Publications Warehouse

    Neckles, Hilary A.; Short, Frederick T.; Barker, Seth; Kopp, Blaine S.

    2005-01-01

    We studied the effects of commercial harvest of blue mussels Mytilus edulis on eelgrass Zostera marina L. in Maquoit Bay, Maine, USA, at a hierarchy of scales. We used aerial photography, underwater video, and eelgrass population- and shoot-based measurements to quantify dragging impacts within 4 sites that had been disturbed at different times over an approximate 7 yr interval, and to project eelgrass meadow recovery rates. Dragging had disturbed 10% of the eelgrass cover in Maquoit Bay, with dragged sites ranging from 3.4 to 31.8 ha in size. Dragging removed above- and belowground plant material from the majority of the bottom in the disturbed sites. One year following dragging, eelgrass shoot density, shoot height and total biomass of disturbed sites averaged respectively 2 to 3%, 46 to 61% and <1% that of the reference sites. Substantial differences in eelgrass biomass persisted between disturbed and reference sites up to 7 yr after dragging. Dragging did not affect physical characteristics of the sediment. The pattern and rate of eelgrass bed recovery depended strongly on initial dragging intensity; areas of relatively light dragging with many remnant eelgrass patches (i.e. patches that were missed by the mussel dredge) showed considerable revegetation in 1 yr. However, by developing recovery trajectories from measurements at sites disturbed in different years, we projected that it would require a mean of 10.6 yr for recovery of eelgrass shoot density within the areas of intense dragging characterizing most of the disturbed sites. A spatial simulation model based on measured rates of lateral patch-expansion (mean 12.5 cm yr-1) and new-patch recruitment (mean 0.19 patches m-2 yr-1) yielded a mean bed recovery time of 9 to 11 yr following dragging, depending on initial degree of plant removal. Model simulations suggested that with favorable environmental conditions, eelgrass beds might recover from dragging disturbance in 6 yr; conversely, recovery under

  5. Nitrogen budget of the eelgrass, Zostera marina in a bay system on the south coast of Korea

    NASA Astrophysics Data System (ADS)

    Park, Sang Rul; Kim, Young Kyun; Kim, Seung Hyeon; Lee, Kun-Seop

    2013-12-01

    Above- and below-ground productivities and tissue N content were measured monthly to quantify N incorporation to sustain eelgrass growth in Koje Bay on the south coast of Korea from January to December 2002. N acquisition was also estimated through measurements of N uptake kinetics, tissue biomass, and in situ inorganic N concentrations in water column and sediments. Above- and below-ground productivities were highest in summer and lowest in late fall and winter. Leaf tissue N content was highest in December and lowest in July, while rhizome tissue N content was highest in October and lowest in April. Estimated monthly N incorporation by leaf tissues based on the leaf productivity and N content ranged from 0.4 g N m-2 month-1 in November to 2.0 g N m-2 month-1 in May. N incorporation by below-ground tissues ranged from 0.1 g N m-2 month-1 in February to 0.2 g N m-2 month-1 in October. Annual whole plant N incorporation was 14.5 g N m-2 y-1, and N incorporation by leaf tissues accounted for about 87 % of total N incorporation. Maximum uptake rate ( V max ) and half saturation constant ( K m ) of leaf NH4 + uptake were significantly lower than those of root NH4 + uptake. Above- and below-ground biomass ranged from 20.8 g DW m-2 and 8.6 g DW m-2 in winter to 350.0 g DW m-2 and 81.3 g DW m-2 in spring, respectively. NH4 + concentrations varied from 0.2 to 4.3 mM in water column and from 93.0 to 551.7 mM in sediment pore water. Based on these measurements, annual N acquisition by root tissues contributed slightly higher than that by leaf tissues to total plant N acquisition. During winter, monthly leaf N acquisition was lower than monthly leaf N incorporation. This implies that Z. marina has internal nitrogen retention system to offset the shortage and excess of nitrogen.

  6. Molluscs associated with a subtidal Zostera marina L. bed in southern Spain: Linking seasonal changes of fauna and environmental variables

    NASA Astrophysics Data System (ADS)

    Rueda, Jose L.; Salas, Carmen

    2008-08-01

    The temporal variation of the molluscan fauna associated with a deep Zostera marina bed (12-14 m depth) in Cañuelo Bay (southern Spain) has been studied in relation to water, sediment and eelgrass variables. Samples of molluscs from the sediment and the eelgrass (5 replicates per season) were seasonally collected using a quadrat of 25 × 25 cm. The water column was characterized by the temperature and chlorophyll a concentration. The grain size distribution of the sediment and percentage of organic matter (%OM) were also studied. Estimations of the shoot density, leaf/rhizome biomass and Leaf Area Index (LAI) have been obtained for each sample. Statistical analyses have been performed with SYSTAT and PRIMER software. A total of 2396 individuals and 85 species of molluscs were collected. The most dominant species were infaunal bivalves such as Tellina distorta (28.1%), Dosinia lupinus, Tellina fabula and Chamelea gallina. The gastropods Jujubinus striatus (4.6%), Nassarius pygmaeus and Bittium reticulatum were the dominant epifaunal species. The most frequent species was T. distorta (100%), followed by other infaunal bivalves such as T. fabula, Solemya togata or Lucinella divaricata. The most frequent gastropods were J. striatus (95%), followed by B. reticulatum, N. pygmaeus, Nassarius reticulatus, Mitrella minor and Smaragdia viridis. The abundance of molluscs displayed significant maximum values in summer and autumn (above 2500 indiv. m -2) and minimum values in spring (below 1500 indiv. m -2). The abundance of the epifauna was related with leaf biomass, whereas that of the infauna was positively related with %OM. The species richness also followed a significant seasonal variation with maximum values in summer (64 species in all summer samples) and minimum values in autumn (44 in all autumn samples), and was positively related with LAI. In both qualitative and quantitative cluster/MDS, samples (replicates) mainly grouped according to the season, with

  7. Design and construction of a 115 kW photovoltaic/hybrid system for Dangling Rope Marina, Glen Canyon National Recreation Area

    SciTech Connect

    Ball, T.J.

    1997-12-31

    The largest photovoltaic (solar electric) renewable energy power system ever undertaken by the National Park Service is now installed and operating at the Dangling Rope Marina on Lake Powell in the Glen Canyon National Recreation Area. The Dangling Rope photovoltaic system replaced diesel generators as the primary source of electrical power for the facility. The new system consists of a 115 KW array of advanced design large area photovoltaic modules, manufactured by ASE Americas, a 250 KW Kenetech power conditioning unit and a 2.4 Megawatt hour C and D battery storage bank. Automatic controls and software provide unmanned system operation and remote monitoring and control. Despite the remoteness of the site, which posed significant construction challenges, the system was installed on time and budget with a total installed cost below $12/watt.

  8. Wild cane toads (Rhinella marina) expel foreign matter from the coelom via the urinary bladder in response to internal injury, endoparasites and disease.

    PubMed

    Kelehear, Crystal; Jones, Hugh I; Wood, Benjamin A; Shine, Richard

    2015-01-01

    Dissections of >1,200 wild-caught cane toads (Rhinella marina) in tropical Australia confirm a laboratory report that anurans can expel foreign objects from the coelom by incorporating them into the urinary bladder. The foreign objects that we found inside bladders included a diverse array of items (e.g., grass seeds, twigs, insect prey, parasites), many of which may have entered the coelom via rupture of the gut wall. In some cases, the urinary bladder was fused to other organs including liver, fat bodies, ovaries, Bidder's organs, lungs, mesentery, stomach wall, gall bladder, and the abdominal wall. Acanthocephalan parasites (of a range of developmental stages) were identified from the walls of the urinary bladders of three cane toads. This organ may play a significant role in destroying or excreting metazoan parasites, as well as inanimate objects. PMID:26267862

  9. Incorporation of the chlorophyll d-binding light-harvesting protein from Acaryochloris marina and its localization within the photosynthetic apparatus of Synechocystis sp. PCC6803.

    PubMed

    Yang, Daping; Qing, Yang; Min, Chen

    2010-02-01

    The gene encoding a chlorophyll d-binding light-harvesting protein, pcbA from Acaryochloris marina (now called as accessory Chlorophyll Binding Protein CBPII) marked with a His-tag was transformed into the genome of Synechocystis PCC6803. Protein gel electrophoresis and western blotting confirmed that this foreign chlorophyll d-binding protein CBPII was expressed and integrated into the thylakoid membrane and bound with chlorophyll a, the only type of chlorophyll present in Synechocystis PCC 6803. Native electrophoresis suggested that CBPII interacts with photosystem II of Synechocystis PCC 6803. Surprisingly, spectral analyses showed that the phycobiliproteins were suppressed in the transformed Synechocystis pcbA(+), with a lower ratio of phycobilins to chlorophyll a. These results suggest that there are competitive interactions between the external antenna system of phycobiliproteins and the integral antenna system of chlorophyll-bound protein complexes.

  10. The roles of flowering, overwinter survival and sea surface temperature in the long-term population dynamics of Zostera marina around the Isles of Scilly, UK.

    PubMed

    Potouroglou, Maria; Kenyon, Emma J; Gall, Angie; Cook, Kevan J; Bull, James C

    2014-06-30

    Interaction between biotic and abiotic drivers of dynamics is an important topic in ecology. Despite numerous short-term studies, there is a paucity of evidence about how environmental structure modifies dynamics in marine systems. We quantified Zostera marina flowering and non-flowering shoot density annually from 1996 to 2012 around the Isles of Scilly, UK, parameterizing a population dynamic model. Flowering is structured in time and space, with temperature and flowering positively associated at some locations only. We found no evidence that flower production contributes to seagrass density but 'patchiness' was positively associated with flowering in the previous year. With evidence of substantial overwinter survival, findings support the hypothesis that local populations are maintained largely through vegetative reproduction but sexual reproduction may contribute to colonisation of vacant habitat. This long-term study (1) tests validity of shorter-term investigations, (2) quantifies interaction between biotic and abiotic factors and (3) promotes seagrass as a model ecosystem. PMID:24731880

  11. Wild Cane Toads (Rhinella marina) Expel Foreign Matter from the Coelom via the Urinary Bladder in Response to Internal Injury, Endoparasites and Disease

    PubMed Central

    Kelehear, Crystal; Jones, Hugh I.; Wood, Benjamin A.; Shine, Richard

    2015-01-01

    Dissections of >1,200 wild-caught cane toads (Rhinella marina) in tropical Australia confirm a laboratory report that anurans can expel foreign objects from the coelom by incorporating them into the urinary bladder. The foreign objects that we found inside bladders included a diverse array of items (e.g., grass seeds, twigs, insect prey, parasites), many of which may have entered the coelom via rupture of the gut wall. In some cases, the urinary bladder was fused to other organs including liver, fat bodies, ovaries, Bidder’s organs, lungs, mesentery, stomach wall, gall bladder, and the abdominal wall. Acanthocephalan parasites (of a range of developmental stages) were identified from the walls of the urinary bladders of three cane toads. This organ may play a significant role in destroying or excreting metazoan parasites, as well as inanimate objects. PMID:26267862

  12. The roles of flowering, overwinter survival and sea surface temperature in the long-term population dynamics of Zostera marina around the Isles of Scilly, UK.

    PubMed

    Potouroglou, Maria; Kenyon, Emma J; Gall, Angie; Cook, Kevan J; Bull, James C

    2014-06-30

    Interaction between biotic and abiotic drivers of dynamics is an important topic in ecology. Despite numerous short-term studies, there is a paucity of evidence about how environmental structure modifies dynamics in marine systems. We quantified Zostera marina flowering and non-flowering shoot density annually from 1996 to 2012 around the Isles of Scilly, UK, parameterizing a population dynamic model. Flowering is structured in time and space, with temperature and flowering positively associated at some locations only. We found no evidence that flower production contributes to seagrass density but 'patchiness' was positively associated with flowering in the previous year. With evidence of substantial overwinter survival, findings support the hypothesis that local populations are maintained largely through vegetative reproduction but sexual reproduction may contribute to colonisation of vacant habitat. This long-term study (1) tests validity of shorter-term investigations, (2) quantifies interaction between biotic and abiotic factors and (3) promotes seagrass as a model ecosystem.

  13. The concept of population in clonal organisms: mosaics of temporally colonized patches are forming highly diverse meadows of Zostera marina in Brittany.

    PubMed

    Becheler, R; Diekmann, O; Hily, C; Moalic, Y; Arnaud-Haond, S

    2010-06-01

    Seagrasses structure some of the world's key coastal ecosystems presently in decline due to human activities and global change. The ability to cope with environmental changes and the possibilities for shifts in distribution range depend largely on their evolvability and dispersal potential. As large-scale data usually show strong genetic structure for seagrasses, finer-grained work is needed to understand the local processes of dispersal, recruitment and colonization that could explain the apparent lack of exchange across large distances. We aimed to assess the fine-grained genetic structure of one of the most important and widely distributed seagrasses, Zostera marina, from seven meadows in Brittany, France. Both classic population genetics and network analysis confirmed a pattern of spatial segregation of polymorphism at both regional and local scales. One location exhibiting exclusively the variety 'angustifolia' did not appear more differentiated than the others, but instead showed a central position in the network analysis, confirming the status of this variety as an ecotype. This phenotypic diversity and the high allelic richness at nine microsatellites (2.33-9.67 alleles/locus) compared to levels previously reported across the distribution range, points to Brittany as a centre of diversity for Z. marina at both genetic and phenotypic levels. Despite dispersal potential of several 100 m, a significant pattern of genetic differentiation, even at fine-grained scale, revealed 'genetic patchiness'. Meadows seem to be composed of a mosaic of clones with distinct origins in space and time, a result that calls into question the accuracy of the concept of populations for such partially clonal species.

  14. Use of a high-resolution profiling sonar and a towed video camera to map a Zostera marina bed, Solent, UK

    NASA Astrophysics Data System (ADS)

    Lefebvre, A.; Thompson, C. E. L.; Collins, K. J.; Amos, C. L.

    2009-04-01

    Seagrasses are flowering plants that develop into extensive underwater meadows and play a key role in the coastal ecosystem. In the last few years, several techniques have been developed to map and monitor seagrass beds in order to protect them. Here, we present the results of a survey using a profiling sonar, the Sediment Imager Sonar (SIS) and a towed video sledge to study a Zostera marina bed in the Solent, southern UK. The survey aimed to test the instruments for seagrass detection and to describe the area for the first time. On the acoustic data, the bed produced the strongest backscatter along a beam. A high backscatter above the bottom indicated the presence of seagrass. The results of an algorithm developed to detect seagrass from the sonar data were tested against video data. Four parameters were calculated from the SIS data: water depth, a Seagrass Index (average backscatter 10-15 cm above the bed), canopy height (height above the bed where the backscatter crosses a threshold limit) and patchiness (percentage of beams in a sweep where the backscatter 10-15 cm above the bed is greater than a threshold limit). From the video, Zostera density was estimated together with macroalgae abundance and bottom type. Patchiness calculated from the SIS data was strongly correlated to seagrass density evaluated from the video, indicating that this parameter could be used for seagrass detection. The survey area has been classified based upon seagrass density, macroalgae abundance and bottom type. Only a small area was occupied by a dense canopy whereas most of the survey area was characterised by patchy seagrass. Results indicated that Zostera marina developed only on sandy bottoms and was not found in regions of gravel. Furthermore, it was limited to a depth shallower than 1.5 m below the level of Lowest Astronomical Tide and present in small patches across the intertidal zone. The average canopy height was 15 cm and the highest density was 150 shoots m -2.

  15. Wenxinia marina gen. nov., sp. nov., a novel member of the Roseobacter clade isolated from oilfield sediments of the South China Sea.

    PubMed

    Ying, Jiao-Yan; Wang, Bao-Jun; Dai, Xin; Yang, Su-Sheng; Liu, Shuang-Jiang; Liu, Zhi-Pei

    2007-08-01

    An aerobic and heterotrophic, Gram-negative bacterial isolate, strain HY34(T), was isolated from sediment of an oilfield in the South China Sea, China. The taxonomy of strain HY34(T) was studied by phenotypic and phylogenetic methods. Strain HY34(T) formed faint-pink colonies on marine agar 2216. Cells of strain HY34(T) were non-motile, ovoid or short rods. Strain HY34(T) was positive for catalase and oxidase, and nitrate was reduced to nitrite. The nearly complete 16S rRNA gene sequence of strain HY34(T) was obtained and sequence analysis showed that it, together with the genus Rubellimicrobium, formed a distinct clade close to some members of the Roseobacter clade in the family Rhodobacteraceae, and it showed highest sequence similarities to Oceanicola granulosus HTCC2516(T) (93.8 %), Silicibacter lacuscaerulensis ITI-1157(T) (93.3 %), Dinoroseobacter shibae DFL 12(T) (93.3 %) and Rubellimicrobium thermophilum C-lvk-R2A-2(T) (92.2 %). Bacteriochlorophyll a was not detected. The ubiquinone system was Q-10. The major polar lipids were phosphatidylglycerol, phosphatidylcholine and an unidentified glycolipid. The major fatty acids (>10 %) were C(18 : 1) omega 7c and C(16 : 0). The DNA G+C content of this strain was 69.4 mol%. A polyphasic analysis supported the conclusion that this strain represents a novel genus and species, which we designated Wenxinia marina gen. nov., sp. nov. The type strain of Wenxinia marina is HY34(T) (=CGMCC 1.6105(T) =JCM 14017(T)).

  16. Modelling reveals endogenous osmotic adaptation of storage tissue water potential as an important driver determining different stem diameter variation patterns in the mangrove species Avicennia marina and Rhizophora stylosa

    PubMed Central

    Vandegehuchte, Maurits W.; Guyot, Adrien; Hubeau, Michiel; De Swaef, Tom; Lockington, David A.; Steppe, Kathy

    2014-01-01

    Background Stem diameter variations are mainly determined by the radial water transport between xylem and storage tissues. This radial transport results from the water potential difference between these tissues, which is influenced by both hydraulic and carbon related processes. Measurements have shown that when subjected to the same environmental conditions, the co-occurring mangrove species Avicennia marina and Rhizophora stylosa unexpectedly show a totally different pattern in daily stem diameter variation. Methods Using in situ measurements of stem diameter variation, stem water potential and sap flow, a mechanistic flow and storage model based on the cohesion–tension theory was applied to assess the differences in osmotic storage water potential between Avicennia marina and Rhizophora stylosa. Key results Both species, subjected to the same environmental conditions, showed a resembling daily pattern in simulated osmotic storage water potential. However, the osmotic storage water potential of R. stylosa started to decrease slightly after that of A. marina in the morning and increased again slightly later in the evening. This small shift in osmotic storage water potential likely underlaid the marked differences in daily stem diameter variation pattern between the two species. Conclusions The results show that in addition to environmental dynamics, endogenous changes in the osmotic storage water potential must be taken into account in order to accurately predict stem diameter variations, and hence growth. PMID:24534674

  17. Human-induced hydrological changes and sinkholes in the gypsum karst of Lesina Marina area (Foggia Province, Italy)

    NASA Astrophysics Data System (ADS)

    Fidelibus, M. D.; Gutierrez, F.; Spilotro, G.

    2009-04-01

    the piezometric level and the associated bidirectional changes of the groundwater flow in the vicinity of the canal play a relevant role in the internal erosion processes. The low cohesion of the sandy cover determines to a great extent the high speed at which suffosion processes and the generation-enlargement of sinkholes are taking place. Subsidence activity has affected the canal since its construction. To our knowledge, the first account of a sinkhole occurrence in the adjacent area corresponds to an official report dating back to 1990. The great majority of the sinkholes are located within the canal and on two relatively narrow bands situated on its flanks. The sinkholes tend to form clusters and alignments with a prevalent N145E orientation. The Lesina Marina residential area, whose construction in the western side of the canal started around 1980, is currently suffering from subsidence damage, including the occurrence of collapse sinkholes in streets, destruction of pathways and cracking of walls. Boreholes and geophysical surveys performed in the area reveal the presence of abundant cavities up to 9 m in height, cave fills and collapse breccias in the strongly karstified bedrock. Most of the depressions can be classified as cover suffosion and collapse sinkholes generated by the downward migration of the loose sandy cover through voids in the bedrock. The lack of basal support caused by piping may lead to the gradual settlement of the cover and/or its collapse through the development of failure planes. These sinkholes are typically less than 1 m across and 2-3 m deep at the initial stages. However, they typically grow very rapidly by mass wasting processes acting on their edges until they reach the repose angle of the detrital mantle. Consequently, clusters of small sinkholes tend to evolve into a smaller number of large depressions up to 20 m meters across resulting from the coalescence of several dolines. Some sinkholes are related to the breakdown of

  18. Appraisal of the groundwater conceptual model of the gypsum coastal karst of Lesina Marina (Puglia, Southern Italy) aiming at density-dependent modeling.

    NASA Astrophysics Data System (ADS)

    Campana, C.; Fidelibus, M. D.

    2012-04-01

    Inhabited coastal areas are site of many risks, because in terms of geomorphology, hydraulics, hydrogeology and mass transport, they are at the lowest level of potential energy. Moreover, considering that at land-sea interface brackish/salt waters enhance in general the effects of water-rock interactions, the number of possible risks increases. This is the case of the gypsum coastal karst of Lesina Marina (Puglia, Southern Italy), where, starting from 1993, a number of sinkholes developed mostly along an artificial canal, excavated in 1927 to connect a brackish lagoon with the sea. The excavation diverted groundwater flow, with increase of hydraulic gradients and filtration velocity, amplitude of the groundwater level oscillations and, locally, tidal efficiency, causing continuous "flooding and draining" cycles, largely controlled by tides. These factors, on the whole, favored internal erosion and flushing of cave deposits, and amplified, due to increased hydraulic connectivity between fresh and brackish/salt water, gypsum dissolution. After many years it is still not likely to assess the relative role played by internal erosion and dissolutional enlargement of cavities in the sinkhole development. With the final aim of defining the subsidence risk in the Lesina Marina area, recently the Puglia River Basin Authority realized new bore-holes, geophysical logs and a continuous piezometric monitoring. To the aims of the reconstruction of the aquifer conceptual model and of the identification of key factors for a reliable numerical density-dependent modeling (of flow, solute-transport and reactions), in the period from September to December 2011 we realized Electrical Conductivity and Temperature logs, samplings (at different depths) and chemical analyses along two transects perpendicular to the canal. Apart from the recognition of the main water-rock interaction processes (as gypsum solution and inverse Na/Ca ion-exchange), and the reconstruction of the trends of

  19. Effect of abalone farming on seawater movement and benthic foraminiferal assemblage of Zostera marina in the inner bay of Wando, South Korea.

    PubMed

    Lee, Yeon Gyu; Choi, Yang Ho; Jeong, Da Un; Lee, Jung Sick; Kim, Yong Wan; Park, Jung Jun; Choi, Jae Ung

    2016-08-15

    Tidal current survey as well as geochemical and benthic foraminiferal analyses of sediment cores were conducted in an abalone farm and a Zostera bed to understand the degree to which the abalone farm facilities installed along a channel in a shallow sea affect the benthic environment and ecology. In the abalone farm, Ammonia beccarii-Pseudoparrella naraensis-Elphidium somaense-Rosalina globularis-Trochammina hadai and P. naraensis-E. somaense-A. beccarii-T. hadai assemblages appeared owing to an increase in the total nitrogen content from the biodeposits. The Zostera bed consisted of A. beccarii-P. naraensis-Buccella frigida-T. hadai assemblage owing to the gradual expansion of a brackish shallow-water environment by the rapidly decreasing current speed, and it may have flourished. Moreover, the total sulfur, Zn, Cr, and Cu contents in the sediments decreased remarkably more than those of the pre-abalone farming did, caused by the vigorous activity of Zostera marina physiology.

  20. Pollutant tracking for 3 Western North Atlantic sea grasses by remote sensing: Preliminary diminishing white light responses of Thalassia testudinum, Halodule wrightii, and Zostera marina.

    PubMed

    Thorhaug, Anitra; Berlyn, Graeme P; Poulos, Helen M; Goodale, Uromi M

    2015-08-15

    Sea grasses are foundation species for estuarine ecosystems. The available light for sea grasses diminishes rapidly during pollutant spills, effluent releases, disturbances such as intense riverine input, and tidal changes. We studied how sea grasses' remote-sensing signatures and light-capturing ability respond to short term light alterations. In vivo responses were measured over the entire visible-light spectra to diminishing white-light on whole-living-plants' spectral reflectance, including 6h of full oceanic-light fluences from 10% to 100%. We analyzed differences by various reflectance indices. We compared the sea grasses species responses of tropical vs. temperate and intertidals (Halodule wrightii, and Zostera marina) vs. subtidal (Thalassia testudinum). Reflectance diminished with decreasing light intensity that coincided with greater accessory pigment stimulation (anthocyanin, carotenoids, xanthins). Chlorophyll a and Chlorophyll b differed significantly among species (Thalassia vs. Halodule). Photosynthetic efficiency diminished at high light intensities. The NDVI index was inadequate to perceive these differences. Our results demonstrate the leaf-level utility of data to remote sensing for mapping sea grass and sea grass stress.

  1. Characterization and Genome Sequencing of a Novel Bacteriophage PH101 Infecting Pseudoalteromonas marina BH101 from the Yellow Sea of China.

    PubMed

    Wang, Duo-bing; Sun, Meng-qi; Shao, Hong-bing; Li, Yan; Meng, Xue; Liu, Zhao-yang; Wang, Min

    2015-11-01

    A novel Pseudoalteromonas marina bacteriophage, PH101, specifically infecting Pseudoalteromonas BH101 was isolated from the water sample of the Yellow Sea of China using the agar overlay method. 16S rDNA sequence identification was used to identify the host bacteria. Efficiency of infection, multiplicity of infection value, morphological characterization, one-step growth curve, and host range of the bacteriophage were determined. Purified PH101 genomic DNA was extracted and its genome was completely sequenced and analyzed. The phage morphology showed that PH101 belongs to the Myoviridae family with a head of 60 nm in diameter and a tail of 40 nm with a tail fiber of 10-20 nm. Microbiological characterization demonstrated that phage PH101 is stable at a wide range of temperatures (0-70 °C) and showed acid and alkaline resistance (pH 3-12). The one-step growth curve showed a latent period of about 20 min, a rise period of 20 min, and a burst size of about 31.6 virions. The genome sequencing and bioinformatic analysis shows that phage PH101 was a novel bacteriophage which was found to consist of a linear, double-stranded 131,903-bp DNA molecule with a GC content of 37.36 % and 228 putative open reading frames without RNA, which were classified into seven functional groups, including phage structure, adsorption, packaging, gene transfer protease, terminase, DNA binding, and regulation.

  2. Accumulation of Trace Metal Elements (Cu, Zn, Cd, and Pb) in Surface Sediment via Decomposed Seagrass Leaves: A Mesocosm Experiment Using Zostera marina L.

    PubMed Central

    Konuma, Susumu; Nakamura, Yoshiyuki

    2016-01-01

    Accumulation of Cu, Zn, Cd, and Pb in the sediment of seagrass ecosystems was examined using mesocosm experiments containing Zostera marina (eelgrass) and reference pools. Lead was approximately 20-fold higher in the surface sediment in the eelgrass pool than in eelgrass leaves and epiphytes on the eelgrass leaves, whereas zinc and cadmium were significantly lower in the surface sediment than in the leaves, with intermediate concentrations in epiphytes. Copper concentrations were similar in both the surface sediment and leaves but significantly lower in epiphytes. Carbon and nitrogen contents increased significantly with increasing δ13C in surface sediments of both the eelgrass and reference pools. Copper, Zn, Cd, and Pb also increased significantly with increasing δ13C in the surface sediment in the eelgrass pool but not in the reference pool. By decomposition of eelgrass leaves with epiphytes, which was examined in the eelgrass pool, copper and lead concentrations increased more than 2-fold and approximately a 10-fold, whereas zinc and cadmium concentrations decreased. The high copper and lead concentrations in the surface sediment result from accumulation in decomposed, shed leaves, whereas zinc and cadmium remobilized from decomposed shed leaves but may remain at higher concentrations in the leaves than in the original sediments. The results of our mesocosm study demonstrate that whether the accumulation or remobilization of trace metals during the decomposition of seagrass leaves is trace metal dependent, and that the decomposed seagrass leaves can cause copper and lead accumulation in sediments in seagrass ecosystems. PMID:27336306

  3. Decline of Canada geese (Branta canadensis) and common goldeneye (Bucephala clangula) associated with a collapse of eelgrass (Zostera marina) in a Nova Scotia estuary

    NASA Astrophysics Data System (ADS)

    Seymour, Norman R.; Miller, Anthony G.; Garbary, David J.

    2002-09-01

    Mean numbers of migrant Canada geese (Branta canadensis) in Antigonish Harbour in the southern Gulf of St. Lawrence (Canada) during October to December were similar (approx. 450-500 birds) for the period 1998-2000. Similarly, during this period, geese used two foraging sites. However, in 2001, the average number of birds decreased by half and the primary foraging sites were used only rarely. This coincided with a decline of about 95% in the biomass of roots and rhizomes of eelgrass (Zostera marina) that occurred between October 2000 and 2001. Eelgrass is the principal food of geese in this estuary. In addition, there was a reduction of around 50% in the numbers of common goldeneye (Bucephala clangula), which feed on invertebrates associated with eelgrass. Lower than usual weekly abundances of geese and goldeneye are probably the result of an unusually short residence time in the estuary, rather than a decline in the total number of visiting migrants. We attribute these changes in the distribution and abundance of geese and goldeneyes to the dramatic decline in eelgrass.

  4. Mixed population genomics support for the central marginal hypothesis across the invasive range of the cane toad (Rhinella marina) in Australia.

    PubMed

    Trumbo, Daryl R; Epstein, Brendan; Hohenlohe, Paul A; Alford, Ross A; Schwarzkopf, Lin; Storfer, Andrew

    2016-09-01

    Understanding factors that cause species' geographic range limits is a major focus in ecology and evolution. The central marginal hypothesis (CMH) predicts that species cannot adapt to conditions beyond current geographic range edges because genetic diversity decreases from core to edge due to smaller, more isolated edge populations. We employed a population genomics framework using 24 235-33 112 SNP loci to test major predictions of the CMH in the ongoing invasion of the cane toad (Rhinella marina) in Australia. Cane toad tissue samples were collected along broad-scale, core-to-edge transects across their invasive range. Geographic and ecological core areas were identified using GIS and habitat suitability indices from ecological niche modelling. Bayesian clustering analyses revealed three genetic clusters, in the northwest invasion-front region, northeast precipitation-limited region and southeast cold temperature-limited region. Core-to-edge patterns of genetic diversity and differentiation were consistent with the CMH in the southeast, but were not supported in the northeast and showed mixed support in the northwest. Results suggest cold temperatures are a likely contributor to southeastern range limits, consistent with CMH predictions. In the northeast and northwest, ecological processes consisting of a steep physiological barrier and ongoing invasion dynamics, respectively, are more likely explanations for population genomic patterns than the CMH. PMID:27393238

  5. Trace metals in sediments and Zostera marina of San Ignacio and Ojo de Liebre lagoons in the central pacific coast of Baja California, Mexico.

    PubMed

    Macías-Zamora, J V; Sánchez-Osorio, J L; Ríos-Mendoza, L M; Ramírez-Alvarez, N; Huerta-Díaz, M A; López-Sánchez, D

    2008-08-01

    San Ignacio and Ojo de Liebre lagoons in central Baja California, Mexico are nursery and grazing grounds for whales and turtles. Ojo de Liebre Lagoon also supports a salt mine operation. By concentrating trace metals via evaporation, this activity might harm biota. Consequently, salt mining might be incompatible with the lagoon's ecological role. Eelgrass can incorporate these elements and reroute them to other organisms. Trace metals in sediments (Cd, Co, Cu, Mn, Ni, Pb, Zn, and Fe) were measured at both lagoons. Some (Cu, Mn, Pb, and Zn) were also measured in Zostera marina patches at both lagoons. The results did not show elevated metal concentration at any lagoon, either for sediments or eelgrass. No statistically significant differences between lagoons were found. However, eelgrass at both lagoons showed larger concentration ranges than in sediments. Also, a correlation exists between sediment metal concentration and its concentration in eelgrass. Surprisingly, several sediment metal concentrations are higher than those considered as elevated for the Southern California Bight.

  6. Vitamin A values of wild-caught Cuban tree frogs (Osteopilus septentrionalis) and marine toads (Rhinella marina) in whole body, liver, and serum.

    PubMed

    Sullivan, Kathleen E; Fleming, Greg; Terrell, Scott; Smith, Dustin; Ridgley, Frank; Valdes, Eduardo V

    2014-12-01

    Recent issues surrounding captive amphibians are often nutritionally related problems, such as hypovitaminosis A. Although supplementation of frogs with vitamin A is a topic of investigation, the underlying issue is understanding vitamin A metabolism in amphibian species. To develop a range of "normal" vitamin A concentrations for captive amphibians, baseline vitamin A concentrations must be established in wild amphibian species. In this study, two species, Cuban tree frogs (Osteopilus septentrionalis; n = 59) and marine toads (Rhinella marina; n = 20) were collected from the wild as part of an invasive species control program at Zoo Miami, Miami, Florida. Serum, liver, and whole body samples were analyzed for vitamin A content. The Cuban tree frogs showed higher concentrations on average of vitamin A in serum (82.8 ppb), liver (248.3 IU/g), and whole body (5474.7 IU/kg) samples compared with marine toads (60.1 ppb; 105.3 IU/g; 940.7 IU/kg, respectively), but differences were not significant (P = 0.22). What can be considered "normal" values of vitamin A concentrations across different amphibian species requires further investigation. Although all amphibians collected in this study appeared healthy, a larger sample size of animals, with known health histories and diets, may provide stronger evidence of normal expectations.

  7. Characterization (δ13C, δ15N and TOC/TN) of marine sediments from restored seagrass (Zostera marina) meadows in coastal lagoons of Virginia

    NASA Astrophysics Data System (ADS)

    Egge, N.; Macko, S. A.

    2011-12-01

    Restoration of the Chesapeake Bay and its neighboring coastal areas has been a major focus of scientific research in the last ten years. The decline of the area is often linked with the explosive population growth and subsequent increases in agriculture and urbanization of the region. In the coastal bays of Virginia, large efforts have been made to restore seagrass (Zostera marina) meadows, which were devastated by a combination of events in the 1930s. As a result of the restoration efforts begun in 2001, seagrass has come to dominate portions of South Bay and Hog Island Bay. Sedimentary characterization (δ13C, δ15N, total organic carbon and total nitrogen) is used to assess sources of organic matter in marine environments. Push cores were used to collect samples from sites that have different records of seagrass cover. Sediments dominated by seagrass contain organic matter enriched in 13C relative to autochthonous algal sources. Within the sediment record there are two regions that show heightened 13C content-one near the surface and another at lower depths. Organic matter enriched in 13C near the surface is from current seagrass cover. Similar characteristics of sediment deeper in the core imply that the area was previously dominated comparable vegetation. Results may be used as a proxy to infer the spatial extent of the historic (prior to 1930) presence of seagrass and guide future restoration projects.

  8. Photosynthetic performance of the Atlantic brown macroalgae, Cystoseira abies-marina, Dictyota dichotoma and Sargassum vulgare, measured in Gran Canaria on site.

    PubMed

    Häder, D -P.; Porst, M; Lebert, M

    2001-02-01

    Photosynthetic performance was determined in three common Atlantic brown macroalgae, Cystoseira abies-marina, Dictyota dichotoma and Sargassum vulgare, in Gran Canaria, Canary Islands, on site. The photosynthetic quantum yield was measured with both a portable PAM instrument on site and a diving PAM under water in the habitat. In parallel, solar radiation was measured continuously above and under water by means of two three-channel dosimeters, ELDONET (Real Time Computer, Möhrendorf, Germany), in three wavelength ranges, UV-A, UV-B and PAR. The effective photosynthetic quantum yield decreased in all species in response to exposure to 15 min of solar radiation but recovered in the subsequent shade conditions within several hours. A 30-min exposure caused an even more profound photoinhibition from which the algae recovered only partially. Most of the effect was due to visible radiation, however, the UV wavelength range, and especially UV-B, considerably enhanced the decrease in photosynthetic quantum yield. In all species except Sargassum a significant photoinhibition was detected at their growth sites at high solar angles in the water column, measured with the diving PAM. PMID:11165628

  9. Accumulation of Trace Metal Elements (Cu, Zn, Cd, and Pb) in Surface Sediment via Decomposed Seagrass Leaves: A Mesocosm Experiment Using Zostera marina L.

    PubMed

    Hosokawa, Shinya; Konuma, Susumu; Nakamura, Yoshiyuki

    2016-01-01

    Accumulation of Cu, Zn, Cd, and Pb in the sediment of seagrass ecosystems was examined using mesocosm experiments containing Zostera marina (eelgrass) and reference pools. Lead was approximately 20-fold higher in the surface sediment in the eelgrass pool than in eelgrass leaves and epiphytes on the eelgrass leaves, whereas zinc and cadmium were significantly lower in the surface sediment than in the leaves, with intermediate concentrations in epiphytes. Copper concentrations were similar in both the surface sediment and leaves but significantly lower in epiphytes. Carbon and nitrogen contents increased significantly with increasing δ13C in surface sediments of both the eelgrass and reference pools. Copper, Zn, Cd, and Pb also increased significantly with increasing δ13C in the surface sediment in the eelgrass pool but not in the reference pool. By decomposition of eelgrass leaves with epiphytes, which was examined in the eelgrass pool, copper and lead concentrations increased more than 2-fold and approximately a 10-fold, whereas zinc and cadmium concentrations decreased. The high copper and lead concentrations in the surface sediment result from accumulation in decomposed, shed leaves, whereas zinc and cadmium remobilized from decomposed shed leaves but may remain at higher concentrations in the leaves than in the original sediments. The results of our mesocosm study demonstrate that whether the accumulation or remobilization of trace metals during the decomposition of seagrass leaves is trace metal dependent, and that the decomposed seagrass leaves can cause copper and lead accumulation in sediments in seagrass ecosystems.

  10. Effect of abalone farming on seawater movement and benthic foraminiferal assemblage of Zostera marina in the inner bay of Wando, South Korea.

    PubMed

    Lee, Yeon Gyu; Choi, Yang Ho; Jeong, Da Un; Lee, Jung Sick; Kim, Yong Wan; Park, Jung Jun; Choi, Jae Ung

    2016-08-15

    Tidal current survey as well as geochemical and benthic foraminiferal analyses of sediment cores were conducted in an abalone farm and a Zostera bed to understand the degree to which the abalone farm facilities installed along a channel in a shallow sea affect the benthic environment and ecology. In the abalone farm, Ammonia beccarii-Pseudoparrella naraensis-Elphidium somaense-Rosalina globularis-Trochammina hadai and P. naraensis-E. somaense-A. beccarii-T. hadai assemblages appeared owing to an increase in the total nitrogen content from the biodeposits. The Zostera bed consisted of A. beccarii-P. naraensis-Buccella frigida-T. hadai assemblage owing to the gradual expansion of a brackish shallow-water environment by the rapidly decreasing current speed, and it may have flourished. Moreover, the total sulfur, Zn, Cr, and Cu contents in the sediments decreased remarkably more than those of the pre-abalone farming did, caused by the vigorous activity of Zostera marina physiology. PMID:27287862

  11. Wenzhouxiangella marina gen. nov, sp. nov, a marine bacterium from the culture broth of Picochlorum sp. 122, and proposal of Wenzhouxiangellaceae fam. nov. in the order Chromatiales.

    PubMed

    Wang, Guanghua; Tang, Mingxing; Li, Tao; Dai, Shikun; Wu, Huanlian; Chen, Chenghao; He, Hui; Fan, Jiewei; Xiang, Wenzhou; Li, Xiang

    2015-06-01

    A Gram-stain negative, non-motile, non-phototrophic, non-alkaliphilic, obligately aerobic, chemoheterotrophic, and rod-shaped bacterium, designated strain Ma-11(T), was isolated from the culture broth of a marine microalga, Picochloruma sp. 122. Phylogenetic analyses showed that strain Ma-11(T) has less than 91 % similarity to its closest relative, Thioalkalivibrio sulfidiphilus HL-EbGR7(T), represents a distinct phylogenetic lineage in the order Chromatiales, and could not be assigned to any defined families in this order. Chemotaxonomic, genetic and physiological characteristics, including major fatty acids, genomic G+C content, lack of motility, aerophilicity and chemoheterotrophicity, could readily distinguish strain Ma-11(T) from any established members of the order Chromatiales. Based on the 16S rRNA gene sequence analysis and its signature nucleotide pattern, a new family Wenzhouxiangellaceae fam. nov. comprising the genus Wenzhouxiangella gen. nov. and species Wenzhouxiangella marina sp. nov. is proposed. The type strain is Ma-11(T) (=CGMCC 1.14936(T) = KCTC 42284(T) = MCCC 1K00261(T)).

  12. The crystal structure of the C45S mutant of annelid Arenicola marina peroxiredoxin 6 supports its assignment to the mechanistically typical 2-Cys subfamily without any formation of toroid-shaped decamers

    PubMed Central

    Smeets, Aude; Loumaye, Eléonore; Clippe, André; Rees, Jean-François; Knoops, Bernard; Declercq, Jean-Paul

    2008-01-01

    The peroxiredoxins (PRDXs) define a superfamily of thiol-dependent peroxidases able to reduce hydrogen peroxide, alkyl hydroperoxides, and peroxynitrite. Besides their cytoprotective antioxidant function, PRDXs have been implicated in redox signaling and chaperone activity, the latter depending on the formation of decameric high-molecular-weight structures. PRDXs have been mechanistically divided into three major subfamilies, namely typical 2-Cys, atypical 2-Cys, and 1-Cys PRDXs, based on the number and position of cysteines involved in the catalysis. We report the structure of the C45S mutant of annelid worm Arenicola marina PRDX6 in three different crystal forms determined at 1.6, 2.0, and 2.4 Å resolution. Although A. marina PRDX6 was cloned during the search of annelid homologs of mammalian 1-Cys PRDX6s, the crystal structures support its assignment to the mechanistically typical 2-Cys PRDX subfamily. The protein is composed of two distinct domains: a C-terminal domain and an N-terminal domain exhibiting a thioredoxin fold. The subunits are associated in dimers compatible with the formation of intersubunit disulfide bonds between the peroxidatic and the resolving cysteine residues in the wild-type enzyme. The packing of two crystal forms is very similar, with pairs of dimers associated as tetramers. The toroid-shaped decamers formed by dimer association and observed in most typical 2-Cys PRDXs is not present. Thus, A. marina PRDX6 presents structural features of typical 2-Cys PRDXs without any formation of toroid-shaped decamers, suggesting that it should function more like a cytoprotective antioxidant enzyme or a modulator of peroxide-dependent cell signaling rather than a molecular chaperone. PMID:18359859

  13. Excitation energy transfer and electron-vibrational coupling in phycobiliproteins of the cyanobacterium Acaryochloris marina investigated by site-selective spectroscopy.

    PubMed

    Gryliuk, G; Rätsep, M; Hildebrandt, S; Irrgang, K-D; Eckert, H-J; Pieper, J

    2014-09-01

    In adaption to its specific environmental conditions, the cyanobacterium Acaryochloris marina developed two different types of light-harvesting complexes: chlorophyll-d-containing membrane-intrinsic complexes and phycocyanobilin (PCB) - containing phycobiliprotein (PBP) complexes. The latter complexes are believed to form a rod-shaped structure comprising three homo-hexamers of phycocyanin (PC), one hetero-hexamer of phycocyanin and allophycocyanin (APC) and probably a linker protein connecting the PBPs to the reaction centre. Excitation energy transfer and electron-vibrational coupling in PBPs have been investigated by selectively excited fluorescence spectra. The data reveal a rich spectral substructure with a total of five low-energy electronic states with fluorescence bands at 635nm, 645nm, 654nm, 659nm and a terminal emitter at about 673 nm. The electronic states at ~635 and 645 nm are tentatively attributed to PC and APC, respectively, while an apparent heterogeneity among PC subunits may also play a role. The other fluorescence bands may be associated with three different isoforms of the linker protein. Furthermore, a large number of vibrational features can be identified for each electronic state with intense phonon sidebands peaking at about 31 to 37cm⁻¹, which are among the highest phonon frequencies observed for photosynthetic antenna complexes. The corresponding Huang-Rhys factors S fall in the range between 0.98 (terminal emitter), 1.15 (APC), and 1.42 (PC). Two characteristic vibronic lines at about 1580 and 1634cm⁻¹ appear to reflect CNH⁺ and CC stretching modes of the PCB chromophore, respectively. The exact phonon and vibrational frequencies vary with electronic state implying that the respective PCB chromophores are bound to different protein environments. This article is part of a special issue entitled: photosynthesis research for sustainability: keys to produce clean energy. PMID:24560813

  14. Effects of multiple chemical, physical, and biological stressors on the incidence and types of abnormalities observed in Bermuda's cane toads (Rhinella marina).

    PubMed

    Bacon, Jamie P; Fort, Chelsea E; Todhunter, Brian; Mathis, Michael; Fort, Douglas J

    2013-06-01

    The interactive effects of contaminants and ultraviolet light (UV)-exposure on the incidence and types of abnormalities observed were measured in newly metamorphosed cane toads (Rhinella marina) from four Bermuda ponds contaminated with petrochemicals and metals. Abnormalities were compared in toadlets that were field-collected, reared in predator exclusion cages, reared in laboratory microcosms exposed to control media or corresponding pond media, and reared in laboratory microcosms exposed to UV-light and control media or media from two ponds. Percent abnormal for field-collected, cage-reared, and microcosm-reared toadlets were equivalent per site and ranged between 14% and 63%. All treatments produced similar limb abnormalities but the percentage of hind versus forelimb defects was statistically greater only in field-collected toadlets. UV-exposed control media did not induce abnormalities in larvae exhibiting no maternal effect, and did not alter the types of abnormalities observed in larvae exhibiting a maternal or latent effect. Site media treatments without UV exposure induced significant cephalic and limb abnormalities, proved additive to the observed maternal/latent effect, and produced limb defects predominantly in forelimbs. Concurrent exposure to site media and UV-light induced similar types of abnormalities but a significantly higher percentage of hind limb abnormalities (68-89%) than exposure to site media alone (7-13%). Our results suggest that the types of abnormalities expressed were principally determined by direct and/or transgenerational contaminant exposure, but that UV-light exposure caused limb abnormalities to occur primarily in the hind limbs, mirroring field observations. Our field observations also suggest that ectromelia and brachydactyly in some field-collected specimens may be predator-induced. PMID:23526808

  15. Effects of multiple chemical, physical, and biological stressors on the incidence and types of abnormalities observed in Bermuda's cane toads (Rhinella marina).

    PubMed

    Bacon, Jamie P; Fort, Chelsea E; Todhunter, Brian; Mathis, Michael; Fort, Douglas J

    2013-06-01

    The interactive effects of contaminants and ultraviolet light (UV)-exposure on the incidence and types of abnormalities observed were measured in newly metamorphosed cane toads (Rhinella marina) from four Bermuda ponds contaminated with petrochemicals and metals. Abnormalities were compared in toadlets that were field-collected, reared in predator exclusion cages, reared in laboratory microcosms exposed to control media or corresponding pond media, and reared in laboratory microcosms exposed to UV-light and control media or media from two ponds. Percent abnormal for field-collected, cage-reared, and microcosm-reared toadlets were equivalent per site and ranged between 14% and 63%. All treatments produced similar limb abnormalities but the percentage of hind versus forelimb defects was statistically greater only in field-collected toadlets. UV-exposed control media did not induce abnormalities in larvae exhibiting no maternal effect, and did not alter the types of abnormalities observed in larvae exhibiting a maternal or latent effect. Site media treatments without UV exposure induced significant cephalic and limb abnormalities, proved additive to the observed maternal/latent effect, and produced limb defects predominantly in forelimbs. Concurrent exposure to site media and UV-light induced similar types of abnormalities but a significantly higher percentage of hind limb abnormalities (68-89%) than exposure to site media alone (7-13%). Our results suggest that the types of abnormalities expressed were principally determined by direct and/or transgenerational contaminant exposure, but that UV-light exposure caused limb abnormalities to occur primarily in the hind limbs, mirroring field observations. Our field observations also suggest that ectromelia and brachydactyly in some field-collected specimens may be predator-induced.

  16. Site-specific success of three transplanting methods and the effect of planting time on the establishment of Zostera marina transplants.

    PubMed

    Park, Jung-Im; Lee, Kun-Seop

    2007-08-01

    Eelgrass, Zostera marina, is the most abundant seagrass species on the coast of Korea, but most large eelgrass meadows have disappeared since the 1970s due to human-induced disturbance. To restore disturbed seagrass habitats in die-off areas, seagrass transplanting has been attempted using various methods. Here, we assessed the feasibility and efficiency of seagrass transplanting methods depending on the sediment type at the planting site. Additionally, the effect of planting time on the establishment of transplant was examined to determine the optimal season for planting. We conducted an eelgrass transplanting experiment from fall 2003 to summer 2004 at three sites with different sediment types using three planting techniques. The staple method resulted in the highest transplant survival rate (77.1-93.8%) at all three sites, but was labor intensive. Transplanting Eelgrass Remotely with Frame Systems (TERFS) method also resulted in relatively a high survival rate (58.7-69.0%) at all sites. The shell method is a newer eelgrass transplanting method in which oyster shells are used as an anchoring device, and does not require SCUBA diving for subtidal transplanting. The shell method resulted in high survival rates in muddy (81.3%) and silty sediments (76.5%), but remarkably low survival rate in sandy sediments (5.0%). The TERFS, and shell methods reduced underwater labor; thus, these methods is suitable for large-scale seagrass restoration. Eelgrass transplants planted in summer had exhibited significant mortality due to high summer water temperatures. Although transplants planted in fall to spring had relatively high survival rates, transplanting and collection of vegetative shoots are difficult in winter and spring. Therefore, fall was suggested as the most effective transplanting season off the coast of Korea.

  17. Excitation energy transfer and electron-vibrational coupling in phycobiliproteins of the cyanobacterium Acaryochloris marina investigated by site-selective spectroscopy.

    PubMed

    Gryliuk, G; Rätsep, M; Hildebrandt, S; Irrgang, K-D; Eckert, H-J; Pieper, J

    2014-09-01

    In adaption to its specific environmental conditions, the cyanobacterium Acaryochloris marina developed two different types of light-harvesting complexes: chlorophyll-d-containing membrane-intrinsic complexes and phycocyanobilin (PCB) - containing phycobiliprotein (PBP) complexes. The latter complexes are believed to form a rod-shaped structure comprising three homo-hexamers of phycocyanin (PC), one hetero-hexamer of phycocyanin and allophycocyanin (APC) and probably a linker protein connecting the PBPs to the reaction centre. Excitation energy transfer and electron-vibrational coupling in PBPs have been investigated by selectively excited fluorescence spectra. The data reveal a rich spectral substructure with a total of five low-energy electronic states with fluorescence bands at 635nm, 645nm, 654nm, 659nm and a terminal emitter at about 673 nm. The electronic states at ~635 and 645 nm are tentatively attributed to PC and APC, respectively, while an apparent heterogeneity among PC subunits may also play a role. The other fluorescence bands may be associated with three different isoforms of the linker protein. Furthermore, a large number of vibrational features can be identified for each electronic state with intense phonon sidebands peaking at about 31 to 37cm⁻¹, which are among the highest phonon frequencies observed for photosynthetic antenna complexes. The corresponding Huang-Rhys factors S fall in the range between 0.98 (terminal emitter), 1.15 (APC), and 1.42 (PC). Two characteristic vibronic lines at about 1580 and 1634cm⁻¹ appear to reflect CNH⁺ and CC stretching modes of the PCB chromophore, respectively. The exact phonon and vibrational frequencies vary with electronic state implying that the respective PCB chromophores are bound to different protein environments. This article is part of a special issue entitled: photosynthesis research for sustainability: keys to produce clean energy.

  18. Seagrass (Zostera marina) Colonization Promotes the Accumulation of Diazotrophic Bacteria and Alters the Relative Abundances of Specific Bacterial Lineages Involved in Benthic Carbon and Sulfur Cycling

    PubMed Central

    Sun, Feifei; Zhang, Xiaoli; Zhang, Qianqian; Liu, Fanghua

    2015-01-01

    Seagrass colonization changes the chemistry and biogeochemical cycles mediated by microbes in coastal sediments. In this study, we molecularly characterized the diazotrophic assemblages and entire bacterial community in surface sediments of a Zostera marina-colonized coastal lagoon in northern China. Higher nitrogenase gene (nifH) copy numbers were detected in the sediments from the vegetated region than in the sediments from the unvegetated region nearby. The nifH phylotypes detected were mostly affiliated with the Geobacteraceae, Desulfobulbus, Desulfocapsa, and Pseudomonas. Redundancy analysis based on terminal restriction fragment length polymorphism analysis showed that the distribution of nifH genotypes was mostly shaped by the ratio of total organic carbon to total organic nitrogen, the concentration of cadmium in the sediments, and the pH of the overlying water. High-throughput sequencing and phylogenetic analyses of bacterial 16S rRNA genes also indicated the presence of Geobacteraceae and Desulfobulbaceae phylotypes in these samples. A comparison of these results with those of previous studies suggests the prevalence and predominance of iron(III)-reducing Geobacteraceae and sulfate-reducing Desulfobulbaceae diazotrophs in coastal sedimentary environments. Although the entire bacterial community structure was not significantly different between these two niches, Desulfococcus (Deltaproteobacteria) and Anaerolineae (Chloroflexi) presented with much higher proportions in the vegetated sediments, and Flavobacteriaceae (Bacteroidetes) occurred more frequently in the bare sediments. These data suggest that the high bioavailability of organic matter (indicated by relatively lower carbon-to-nitrogen ratios) and the less-reducing anaerobic condition in vegetated sediments may favor Desulfococcus and Anaerolineae lineages, which are potentially important populations in benthic carbon and sulfur cycling in the highly productive seagrass ecosystem. PMID:26209674

  19. Thalassotalea marina sp. nov., isolated from a marine recirculating aquaculture system, reclassification of Thalassomonas eurytherma as Thalassotalea eurytherma comb. nov. and emended description of the genus Thalassotalea.

    PubMed

    Hou, Ting-Ting; Liu, Ying; Zhong, Zhi-Ping; Liu, Hong-Can; Liu, Zhi-Pei

    2015-12-01

    A Gram-stain-negative, facultatively anaerobic bacterium, strain QBLM2T, was isolated from rearing water of a marine recirculating aquaculture system in Tianjin, China. Its taxonomic position was investigated through a polyphasic approach. Cells of strain QBLM2T were non-spore-forming rods, motile by means of a single polar flagellum. Positive for oxidase and catalase. Growth occurred at 15-40 °C (optimum 30 °C), at pH 6.5-10.5 (optimum pH 7.5-8.5) and in the presence of 0-5.0 % (w/v) NaCl (optimum 3 %). Phylogenetic analysis based on 16S rRNA gene sequences showed that strain QBLM2T formed a distinct lineage within the genus Thalassotalea and exhibited sequence similarities of 94.5-96.3 % to members of the genus Thalassotalea. The predominant fatty acids (>10 %) were C17 : 1ω8c and summed feature 3 (C16 : 1ω7c and/or C16 : 1ω6c). The major polar lipids were phosphatidylglycerol and phosphatidylethanolamine. Ubiquinone 8 (Q-8) was the major ubiquinone. The DNA G+C content was 37.1 mol%. Based on the data above, strain QBLM2T is considered to represent a novel species of the genus Thalassotalea, for which the name Thalassotalea marina sp. nov. is proposed. The type strain is QBLM2T ( = CGMCC 1.12814T = KCTC 42731T). Phylogenetic analyses indicated that Thalassomonas eurytherma Za6a-12T fell within the genus Thalassotalea, so it is reclassified as Thalassotalea eurytherma comb. nov. and the description of the genus Thalassotalea is emended.

  20. The Agia Marina Xyliatou Observatory: A remote supersite in Cyprus to monitor changes in the atmospheric composition of the Eastern Mediterranean and the Middle East

    NASA Astrophysics Data System (ADS)

    Sciare, Jean

    2016-04-01

    The Eastern Mediterranean and Middle East (EMME) region has been identified as one of the hot spot region in the world strongly influenced by climate changes impacts. This region is characterized by rapidly growing population with contrasting economic development, strong environmental gradients and climate extremes. However, long-term observations of the atmospheric constituents (gaseous and particulate) of the atmosphere at a remote site representative of EMME is still missing making difficult to assess current and future impacts on air quality, water resources and climate. In collaboration with the Department of Labour Inspection and in the frame of French research programs (ChArMEx and ENVI-Med "CyAr") and the EU H2020 "ACTRIS-2" (2015-2019) project, CyI and CNRS are putting unprecedented efforts to implement at a rural site of Cyprus (Agia Marina Xyliatou) a unique infrastructure to monitor key atmospheric species relevant to air quality and climate. A large set of real-time instrumentations is currently deployed to characterize reactive gases (incl. O3, CO, NOx, SO2, VOC), in-situ aerosol properties (mass, size distribution, light scatt./absorption/extinction coef. and chemistry) and as well as integrated optical properties (sunphotomer, solar flux). Through Transnational access (H2020 ACTRIS2), this station is offering to (non-)EU partners (Research, SMEs) a new atmospheric facility to monitor long range transported clean/polluted air masses from 3 different continents (Europe, Africa, Middle East) and investigate aerosol-cloud interactions through the use of UAV and a mountain site (Troodos, 1900m asl). We will present here an overview of this new research infrastructure and provide a first glance of key features observed from gas/aerosol measurements obtained in 2015

  1. The highly reduced and fragmented mitochondrial genome of the early-branching dinoflagellate Oxyrrhis marina shares characteristics with both apicomplexan and dinoflagellate mitochondrial genomes.

    PubMed

    Slamovits, Claudio H; Saldarriaga, Juan F; Larocque, Allen; Keeling, Patrick J

    2007-09-14

    The mitochondrial genome and the expression of the genes within it have evolved to be highly unusual in several lineages. Within alveolates, apicomplexans and dinoflagellates share the most reduced mitochondrial gene content on record, but differ from one another in organisation and function. To clarify how these characteristics originated, we examined mitochondrial genome form and expression in a key lineage that arose close to the divergence of apicomplexans and dinoflagellates, Oxyrrhis marina. We show that Oxyrrhis is a basal member of the dinoflagellate lineage whose mitochondrial genome has some unique characteristics while sharing others with apicomplexans or dinoflagellates. Specifically, Oxyrrhis has the smallest gene complement known, with several rRNA fragments and only two protein coding genes, cox1 and a cob-cox3 fusion. The genome appears to be highly fragmented, like that of dinoflagellates, but genes are frequently arranged as tandem copies, reminiscent of the repeating nature of the Plasmodium genome. In dinoflagellates and Oxyrrhis, genes are found in many arrangements, but the Oxyrrhis genome appears to be more structured, since neighbouring genes or gene fragments are invariably the same: cox1 and the cob-cox3 fusion were never found on the same genomic fragment. Analysing hundreds of cDNAs for both genes and circularized mRNAs from cob-cox3 showed that neither uses canonical start or stop codons, although a UAA terminator is created in the cob-cox3 fusion mRNA by post-transcriptional oligoadenylation. mRNAs from both genes also use a novel 5' oligo(U) cap. Extensive RNA editing is characteristic of dinoflagellates, but we find no editing in Oxyrrhis. Overall, the combination of characteristics found in the Oxyrrhis genome allows us to plot the sequence of many events that led to the extreme organisation of apicomplexan and dinoflalgellate mitochondrial genomes.

  2. Repeated thermal stressor causes chronic elevation of baseline corticosterone and suppresses the physiological endocrine sensitivity to acute stressor in the cane toad (Rhinella marina).

    PubMed

    Narayan, Edward J; Hero, Jean-Marc

    2014-04-01

    Extreme environmental temperature could impact the physiology and ecology of animals. The stress endocrine axis provides necessary physiological stress response to acute (day-day) stressors. Presently, there are no empirical evidences showing that exposure to extreme thermal stressor could cause chronic stress in amphibians. This could also modulate the physiological endocrine sensitivity to acute stressors and have serious implications for stress coping in amphibians, particularly those living in fragmented and disease prone environments. We addressed this important question using the cane toad (Rhinella marina) model from its introduced range in Queensland, Australia. We quantified their physiological endocrine sensitivity to a standard acute (capture and handling) stressor after exposing the cane toads to thermal shock at 35°C for 30min daily for 34 days. Corticosterone (CORT) responses to the capture and handling protocol were measured on three sampling intervals (days 14, 24, and 34) to determine whether the physiological endocrine sensitivity was maintained or modulated over-time. Two control groups (C1 for baseline CORT measurement only and C2 acute handled only) and two temperature treatment groups (T1 received daily thermal shock up to day 14 only and a recovery phase of 20 days and T2 received thermal shock daily for 34 days). Results showed that baseline CORT levels remained high on day 14 (combined effect of capture, captivity and thermal stress) for both T1 and T2. Furthermore, baseline CORT levels decreased for T1 once the thermal shock was removed after day 14 and returned to baseline by day 29. On the contrary, baseline CORT levels kept on increasing for T2 over the 34 days of daily thermal shocks. Furthermore, the magnitudes of the acute CORT responses or physiological endocrine sensitivity were consistently high for both C1 and T1. However, acute CORT responses for T2 toads were dramatically reduced between days 24 and 34. These novel findings

  3. Repeated thermal stressor causes chronic elevation of baseline corticosterone and suppresses the physiological endocrine sensitivity to acute stressor in the cane toad (Rhinella marina).

    PubMed

    Narayan, Edward J; Hero, Jean-Marc

    2014-04-01

    Extreme environmental temperature could impact the physiology and ecology of animals. The stress endocrine axis provides necessary physiological stress response to acute (day-day) stressors. Presently, there are no empirical evidences showing that exposure to extreme thermal stressor could cause chronic stress in amphibians. This could also modulate the physiological endocrine sensitivity to acute stressors and have serious implications for stress coping in amphibians, particularly those living in fragmented and disease prone environments. We addressed this important question using the cane toad (Rhinella marina) model from its introduced range in Queensland, Australia. We quantified their physiological endocrine sensitivity to a standard acute (capture and handling) stressor after exposing the cane toads to thermal shock at 35°C for 30min daily for 34 days. Corticosterone (CORT) responses to the capture and handling protocol were measured on three sampling intervals (days 14, 24, and 34) to determine whether the physiological endocrine sensitivity was maintained or modulated over-time. Two control groups (C1 for baseline CORT measurement only and C2 acute handled only) and two temperature treatment groups (T1 received daily thermal shock up to day 14 only and a recovery phase of 20 days and T2 received thermal shock daily for 34 days). Results showed that baseline CORT levels remained high on day 14 (combined effect of capture, captivity and thermal stress) for both T1 and T2. Furthermore, baseline CORT levels decreased for T1 once the thermal shock was removed after day 14 and returned to baseline by day 29. On the contrary, baseline CORT levels kept on increasing for T2 over the 34 days of daily thermal shocks. Furthermore, the magnitudes of the acute CORT responses or physiological endocrine sensitivity were consistently high for both C1 and T1. However, acute CORT responses for T2 toads were dramatically reduced between days 24 and 34. These novel findings

  4. ZMVHA-B1, the gene for subunit B of vacuolar H+-ATPase from the eelgrass Zostera marina L. Is able to replace vma2 in a yeast null mutant.

    PubMed

    Alemzadeh, Abbas; Fujie, Makoto; Usami, Shoji; Yoshizaki, Tsukasa; Oyama, Keiji; Kawabata, Toyoki; Yamada, Takashi

    2006-11-01

    A vacuolar H(+)-ATPase (VHA) gene (ZMVHA-B1) was isolated from an eelgrass (Zostera marina) leaf cDNA library and was characterized to be approximately 1.4 kbp in length and to encode the B subunit protein of VHA comprising 488 amino acids. ZMVHA-B1 was highly expressed in all organs of eelgrass; the expression level was highest in the leaves. On transformation of a yeast vma2 null mutant with ZMVHA-B1, yeast cells became able to grow at pH 7.5, accompanied by the vesicular accumulation of LysoSensor green DND-189. Thus, ZMVHA-B1 expressed in yeast cells produced a functional B subunit that was efficiently incorporated into the VHA complex and eventually restored vacuolar morphology and activity. This success expedites the application of heterologous expression in yeast mutant cells to the screening of eelgrass genes involved in salt-resistance mechanisms, which are to be utilized in improving important crops.

  5. Assessment of sediment quality in Avicennia marina-dominated embayments of Sydney Estuary: the potential use of pneumatophores (aerial roots) as a bio-indicator of trace metal contamination.

    PubMed

    Nath, Bibhash; Birch, Gavin; Chaudhuri, Punarbasu

    2014-02-15

    Currently, coastal intertidal environments are under stress from increased contaminant loads due to urbanization and other anthropogenic disturbances. Mangrove habitats are abundant in tropical and sub-topical intertidal zones and frequently act as a metal bio-filter in estuarine systems. Mangrove reforestation is often considered as one of the management options to protect estuarine-marine habitats. The main objective of the present investigation was to assess the bio-indicator potential of Avicennia marina by determining heavy metal concentrations in pneumatophore (aerial root) tissues and ambient sediments from Sydney Estuary (Australia). We collected mangrove sediments and pneumatophores in fifteen locations covering five major embayments of the estuary for a detailed biogeochemical investigation. Metal concentrations in sediment were mostly above Australian interim sediment quality guidelines (ISQG)-Low and in few instances above ISQG-High values. Enrichment factors (EFs >6, especially of Cu, Pb and Zn) suggest "very severe" modification of sediment in Sydney Estuary in all but one embayment which was mainly due to rapid changes in land use in connection with urbanization. High bio-concentration factors (BCFs) were observed for Cu and Ni in comparison with other metals (i.e., As, Cd, Co, Cr, Pb and Zn). A strong, positive relationship between metals in sediments and pneumatophores suggests potential use of these tissues as a bio-indicator of estuarine contamination and that metals are entering the biotic environment. The study further highlights a positive role of mangroves in sequestering metals from sediments and the water column and thus protecting estuarine environments from pollution.

  6. Exploiting COSMO-Skymed Data and Multi-Temporal Interferometry for Early Detection of Landslide Hazard: A Case of Slope Failure and Train Derailment Near Marina Di Andora, Italy.

    NASA Astrophysics Data System (ADS)

    Wasowski, J.; Chiaradia, M.; Bovenga, F.; Nutricato, R.; Nitti, D. O.; Milillo, G.; Guerriero, L.

    2014-12-01

    The improving temporal and spatial resolutions of new generation space-borne X-Band SAR sensors such as COSMO-SkyMed (CSK) constellation, and therefore their better monitoring capabilities, will guarantee increasing and more efficient use of multi-temporal interferometry (MTI) in landslide investigations. Thanks to their finer spatial resolution with respect to C-band data, X-band InSAR applications are very promising also for monitoring smaller landslides and single engineering structures sited on potentially unstable slopes. This work is focused on the detection of precursory signals of an impending slope failure from MTI time series of ground deformations obtained by exploiting 3 m resolution CSK data. We show the case of retrospectively captured pre-failure strains related to the landslide which occurred on January 2014 close to the town of Marina di Andora. The landslide caused the derailment of a train and the interruption of the railway line connecting north-western Italy to France. A dataset of 56 images acquired in STRIPMAP HIMAGE mode by CSK constellation from October 2008 to May 2014 was processed through SPINUA algorithm to derive the ground surface deformation map and the time series of displacement rates for each coherent radar target. We show that a cluster of moving targets coincides with the structures (buildings and terraces) affected by the 2014 landslide. The analysis of the MTI time series further shows that the targets had been moving since 2009, and thus could have provided a forewarning signal about ongoing slope or engineering structure instability. Although temporal landslide prediction remains difficult even via in situ monitoring, the presented case study indicates that MTI relying on high resolution radars such as CSK can provide very useful information for slope hazard mapping and possibly for early warning. Acknowledgments DIF provided contribution to data analysis within the framework of CAR-SLIDE project funded by MIUR (PON01_00536).

  7. Feasibility Study of Economics and Performance of Solar Photovoltaics at the Former Fort Ord Army Base Site in Marina, California. A Study Prepared in Partnership with the Environmental Protection Agency for the RE-Powering America's Land Initiative: Siting Renewable Energy on Potentially Contaminated Land and Mine Sites

    SciTech Connect

    Stoltenberg, B.; Konz, C.; Mosey, G.

    2013-05-01

    The U.S. Environmental Protection Agency (EPA), in accordance with the RE-Powering America's Land initiative, selected the Former Fort Ord Army Base (FOAB) site in Marina, California, for a feasibility study of renewable energy production. The National Renewable Energy Laboratory (NREL) provided technical assistance for this project. The purpose of this report is to assess the site for a possible photovoltaic (PV) system installation and estimate the cost, performance, and site impacts of different PV options. In addition, the report recommends financing options that could assist in the implementation of a PV system at the site.

  8. Opening Doors for Marina and Carina

    ERIC Educational Resources Information Center

    Ritchey, Margaret

    2011-01-01

    This article describes the process of becoming a more reflective practitioner in the delivery of pediatric physical therapy through attention to 3 challenges: the therapist's resistance to addressing infant-parent mental health issues, the parents' resistance to acknowledging their infants' delays or disabilities, and the therapist's realization…

  9. A unique regulation of the expression of the psbA, psbD, and psbE genes, encoding the 01, 02 and cytochrome b559 subunits of the Photosystem II complex in the chlorophyll d containing cyanobacterium Acaryochloris marina.

    PubMed

    Kiss, Eva; Kós, Peter B; Chen, Min; Vass, Imre

    2012-07-01

    Photosynthetic electron transport, chromatic photoacclirnation and expression of the genes encoding the 01, 02, and cytochrome b559 subunits of the Photosystem II complex were studied in the chlorophyll d containing cyanobacterium Acaryochloris marina MBIC11017 under various environmental conditions. During oxygen deprivation and inhibition of photosynthetic electron transport by dibromothymoquinone the psbA1 gene encoding a 01' isoform was induced. All of the three psbA and one of the three psbD (psbD2) genes, encoding two different isoforms of the 01 and the abundant isoform of the 02 proteins, respectively were induced under exposure to UV-B radiation and high intensity visible light. Under far red light the amount of Photosystem II complexes increased, and expression of the psbE2 gene encoding the alpha-subunit of cytochrome b559 was enhanced. However, the psbF and psbE1 genes encoding the beta- and another isoform of alpha-cytochrome b559, respectively remained lowly expressed under all conditions. Far red light also induced the psbD3 gene encoding a 02' isoform whose primary structure is different from the abundant 02 isoform. psbD3 was also induced under low intensity visible light, when chromatic photoacclimation was indicated by a red-shifted absorption of chlorophyll d. Our results show that differential expression of multigene families encoding different isoforms of 01 and 02 plays an important role in the acclimation of A. marina to contrasting environmental conditions. Moreover, the disproportionate quantity of transcripts of the alpha and beta subunits of cytochrome b559 implies the existence of an alpha-alpha homodimer organization of cytochrome b559 in Photosystem II complexes.

  10. A resolution expressing the sense of the Senate that the memorial park on Hero Street USA, in Silvis, Illinois, should be recognized as Hero Street Memorial Park and should continue to be supported as a park by the Town of Silvis at no cost to United States taxpayers.

    THOMAS, 112th Congress

    Sen. Kirk, Mark Steven [R-IL

    2011-08-02

    08/02/2011 Referred to the Committee on the Judiciary. (text of measure as introduced: CR S5267) (All Actions) Tracker: This bill has the status IntroducedHere are the steps for Status of Legislation:

  11. EFFECTS OF EELGRASS ZOSTRA MARINA CANOPIES ON FLOW AND TRANSPORT

    EPA Science Inventory

    Ecological effects of the interaction between submerged aquatic vegetation and currents depend on the plants and their associated organisms as well as the large-scale transport of dissolved and suspended constituents near the canopy. Mathematical models for airflow within plant c...

  12. A resolution designating August 8, 2009, as "National Marina Day".

    THOMAS, 111th Congress

    Sen. Whitehouse, Sheldon [D-RI

    2009-07-16

    07/24/2009 Resolution agreed to in Senate without amendment and with a preamble by Unanimous Consent. (text: CR S8101) (All Actions) Tracker: This bill has the status Passed SenateHere are the steps for Status of Legislation:

  13. Marina's Fish Shop: A Mathematically- and Technologically-Rich Lesson

    ERIC Educational Resources Information Center

    Wander, Roger; Pierce, Robyn

    2009-01-01

    In early 2008 researchers from the University of Melbourne's "New Technologies for Teaching Mathematics" project created a lesson for the Year 10 students at their Victorian research schools. Two important goals of secondary school mathematics education are to build students' conceptual knowledge and to teach students to think mathematically.…

  14. 33 CFR 110.111 - Marina del Rey Harbor, Calif.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... area is reserved for yachts and other recreational craft and for all types of small craft during storm, stress, or other emergency. Single and fore-and-aft moorings will be allowed in the area as permitted...

  15. 33 CFR 110.111 - Marina del Rey Harbor, Calif.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... area is reserved for yachts and other recreational craft and for all types of small craft during storm, stress, or other emergency. Single and fore-and-aft moorings will be allowed in the area as permitted...

  16. 33 CFR 110.111 - Marina del Rey Harbor, Calif.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... area is reserved for yachts and other recreational craft and for all types of small craft during storm, stress, or other emergency. Single and fore-and-aft moorings will be allowed in the area as permitted...

  17. UPDATE ON THE MARINA STUDY ON LAKE TEXOMA

    EPA Science Inventory

    The National Risk Management Research Laboratory (NRMRL) has instituted a program for Risk Management Research for Ecosystem Restoration in Watersheds. As part of this program a large scale project was initiated on Lake Texoma and the surrounding watershed to evaluate the assimi...

  18. 33 CFR 110.111 - Marina del Rey Harbor, Calif.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... at latitude 33°58′58″, longitude 118°26′46″; thence southerly to latitude 33°58′53″, longitude 118°26′46″; thence southeasterly to latitude 33°58′52″, longitude 118°26′45″; thence southerly to latitude 33°58′39″, longitude 118°26′45″; thence westerly to latitude 33°58′38″, longitude 118°26′55″;...

  19. Enterococcus growth on eelgrass (Zostera marina); implications for water quality.

    PubMed

    Ferguson, Donna M; Weisberg, Stephen B; Hagedorn, Charles; De Leon, Kristine; Mofidi, Vida; Wolfe, Julia; Zimmerman, May; Jay, Jennifer A

    2016-04-01

    Enterococci are fecal indicator bacteria used to monitor fecal pollution of recreational waters. When enterococci levels exceed health standards, fecal pollution is assumed as the cause. Enterococci growing on plants limit their usefulness as fecal indicator bacteria. Here we examined enterococcal growth on eelgrass in Mission Bay, CA where enterococci levels have exceeded water quality thresholds. A total of 69 eelgrass samples were collected from six sites, shaken to remove enterococci attached to plant surfaces and the eluant filtered onto culture media. Isolates were then identified to species using biochemical methods, and DNA typing by pulsed-field gel electrophoresis was done to assess clonality of strains. Enterococci concentrations among eelgrass ranged from 8 to 14 000 CFU g(-1) dry weight. The most predominant enterococcal species found were Enterococcus casseliflavus and E. hirae followed by E. faecalis. Cluster analysis indicated a high level of clonality among isolates across all species, with clonal isolates consistently associated with individual eelgrass samples. Finding high densities of E. casseliflavus, E. hirae and E. faecalis on eelgrass that included clonal strains indicates the capability of enterococcal growth on eelgrass. Amplification of enterococci on eelgrass presents challenges for regulatory agencies that interpret elevated levels of these bacteria as an indication of fecal pollution.

  20. MODELING COUPLING OF EEL GRASS ZOSTRA MARINA AND WATER FLOW

    EPA Science Inventory

    Ecological effects caused by submerged aquatic vegetation not only depend on the plants and their morphology but also on the flow and transport patterns of dissolved and suspended constituents near the canopy. The height of the canopy is a major parameter in any quantitative an...

  1. Population genetics features for persistent, but transient, Botryllus schlosseri (Urochordata) congregations in a central Californian marina.

    PubMed

    Karahan, Arzu; Douek, Jacob; Paz, Guy; Rinkevich, Baruch

    2016-08-01

    The colonial tunicate Botryllus schlosseri is a globally distributed, invasive ascidian that has colonized the Californian coasts of the USA during the mid-late 1940s and has, since the late 1980s, spread north to Washington. This study analyzes the population genetic characteristics of transient populations residing at the Elkhorn Yacht-Club (EYC), in central California (seven sessions, 1996-2008), which suffered periodic catastrophes caused by episodic fresh-water floods and a single sampling session (in the year 2001) of five West-Coast populations using the mtDNA COI gene and five microsatellite markers. EYC microsatellite results were further compared with the closely situated but persistent population of the Santa Cruz Harbor (SCH) to understand the impact on EYC population regeneration processes after the 2005-flood catastrophe. All microsatellites were highly polymorphic, revealing a large number of unique alleles at different sampling dates. Whereas pairwise θ did not reveal significant differences between the EYC time-series samplings, the overall θ was significant, as it was between all the 2001 West Coast populations. The most likely cluster number was 3 for the EYC samples whereas two K values were obtained (2 and 5) for the 2001 samples. Tajima's D and Fu's/Fs tests did not reject the null hypothesis for COI neutral evolution, except for in the EYC-2000, 2007 and two 2001 samplings. The wide geographical range of the analyses has indicated that following the EYC 2005-flood catastrophe, newcomers could have originated from neighboring populations, from deep-water colonies that may have escaped the 2005 low salinity event, or less expectedly, from far away West-Coast populations, while revealing that the SCH population is the most probable source for the EYC population. PMID:27154209

  2. King County Nearshore Habitat Mapping Data Report: Picnic Point to Shilshole Bay Marina

    SciTech Connect

    Woodruff, Dana L.; Farley, Paul J.; Borde, Amy B.; Southard, John A.; Thom, Ronald M.

    2000-12-31

    The objective of this study is to provide accurate, georeferenced maps of benthic habitats to assist in the siting of a new wastewater treatment plant outfall and the assessment of habitats of endangered, threatened, and economically important species. The mapping was conducted in the fall of 1999 using two complementary techniques: side-scan sonar and underwater videography. Products derived from these techniques include geographic information system (GIS) compatible polygon data of substrate type and vegetation cover, including eelgrass and kelp. Additional GIS overlays include underwater video track line data of total macroalgae, selected macroalgal species, fish, and macroinvertebrates. The combined tools of geo-referenced side-scan sonar and underwater video is a powerful technique for assessing and mapping of nearshore habitat in Puget Sound. Side-scan sonar offers the ability to map eelgrass with high spatial accuracy and resolution, and provides information on patch size, shape, and coverage. It also provides information on substrate change and location of specific targets (e.g., piers, docks, pilings, large boulders, debris piles). The addition of underwater video is a complementary tool providing both groundtruthing for the sonar and additional information on macro fauna and flora. As a groundtruthing technique, the video was able to confirm differences between substrate types, as well as detect subtle spatial changes in substrate. It also verified information related to eelgrass, including the density classification categories and the type of substrate associated with eelgrass, which could not be determined easily with side- scan sonar. Video is also a powerful tool for mapping the location of macroalgae, (including kelp and Ulva), fish and macroinvertebrates. The ability to geo-locate these resources in their functional habitat provides an added layer of information and analytical potential.

  3. Protecting the hand that feeds us: seagrass (Zostera marina) serves as commercial juvenile fish habitat.

    PubMed

    Bertelli, Chiara M; Unsworth, Richard K F

    2014-06-30

    Although fisheries are of major economic and food security importance we still know little about specific juvenile habitats that support such production. This is a major issue given the degradation to and lack of protection afforded to potential juvenile habitats such as seagrass meadows. In the present study we investigate the role of seagrass in supporting juvenile fish of commercial value. By assessing seagrass relative to adjacent sand we determined the presence of abundant juvenile fish. Nine commercial species were recorded and the most abundant of these were Plaice, Pollock and Herring. We provide the first quantitative evidence of the presence of juvenile fish of commercial value in seagrass surrounding Great Britain. Although the species that we found in seagrass as juveniles are not obligate seagrass users the resources that seagrass meadows offer to these fish provide significant long-term fitness benefits, potentially enhancing the whole population. PMID:23998854

  4. Cadmium distribution in sediment and the lugworm Arenicola marina in a low concentration exposure experiment

    SciTech Connect

    Everaarts, J.M.; SaralaDevi, K.

    1996-12-31

    In the central and southern North Sea, and in the Dutch coastal zone, total cadmium (Cd) concentrations in water are 0.02 {+-} 0.01 {mu}g/L and 0.06 {+-} 0.02 {mu}g/L, respectively Cadmium in the estuarine waters of the Dutch Wadden Sea varied from 0.3 {+-} 0.01 {mu}g/L in the western part to 0.08 {+-} 0.03 {mu}g/L in the eastern part. In whole sediment, the Cd background concentration for the Wadden Sea is 0.5 {+-} 0.01 {mu}g/g dry weight (dw), whereas the reference concentration is 0.08 {+-} 0.02 {mu}g/g dw. The concentrations of total-Cd in surface bulk sediments (0-2 cm) of the central North Sea (Oyster Grounds), and of intertidal mud-flats in the western Wadden Sea varied from 0.05 to 0.15 {mu}g/g dw and from 0.13 to 0.46 {mu}g dw, respectively (calculated from Kahn et al. 1992). These concentration ranges match the reference Cd concentration for Wadden Sea whole sediment (0.5 {+-} 0.01) {mu}g/g dw. Cadmium concentrations in surface sediments of the Dutch coastal zone and estuaries are only slightly elevated compared to the 0.2 {mu}g/g dw, considered as the background concentrations in pristine areas, but well below the level of 10 {mu}g/g dw at heavily contaminated sites. This laboratory study reports on the distribution of cadmium in the sediment column, and the uptake in the blood/coelomic fluid, intestine and body-wall of lugworms at low cadmium concentration exposure. The aim was to determine possible interaction between the vertical distribution of sediment-bound cadmium and the bioturbating activity of lugworms. 14 refs., 3 figs., 2 tabs.

  5. Assessing the impacts of salinity and nutrient stress to Ruppia maritima and Zostera marina.

    EPA Science Inventory

    Healthy seagrass beds were once found throughout the shallow areas of Narragansett Bay, R.I. but have disappeared due to infilling, pollution and disease. In Greenwich Bay, a highly developed embayment within Narragansett Bay, Ruppia maritima has colonized an area on the northern...

  6. IMPACTS OF SALINITY AND NUTRIENT STRESS TO RUPPIA MARITIMA AND ZOSTERA MARINA: A MESOCOSM EXPERIMENT

    EPA Science Inventory

    Healthy seagrass beds were once found throughout the shallow areas of Narragansett Bay, R.I. but have disappeared due to infilling, pollution and disease. In Greenwich Bay, a highly developed embayment within Narragansett Bay, Ruppia maritima has colonized an area on the norther...

  7. Zostera marina root demography in an intertidal estuarine environment measured using minirhizotron technology

    EPA Science Inventory

    Over the last four decades there have been major advances in our understanding of the biology, ecology and physiology of seagrasses and their interaction with the environment. Despite these advances, there has been relatively little advancement in our understanding of the belowg...

  8. Protecting the hand that feeds us: seagrass (Zostera marina) serves as commercial juvenile fish habitat.

    PubMed

    Bertelli, Chiara M; Unsworth, Richard K F

    2014-06-30

    Although fisheries are of major economic and food security importance we still know little about specific juvenile habitats that support such production. This is a major issue given the degradation to and lack of protection afforded to potential juvenile habitats such as seagrass meadows. In the present study we investigate the role of seagrass in supporting juvenile fish of commercial value. By assessing seagrass relative to adjacent sand we determined the presence of abundant juvenile fish. Nine commercial species were recorded and the most abundant of these were Plaice, Pollock and Herring. We provide the first quantitative evidence of the presence of juvenile fish of commercial value in seagrass surrounding Great Britain. Although the species that we found in seagrass as juveniles are not obligate seagrass users the resources that seagrass meadows offer to these fish provide significant long-term fitness benefits, potentially enhancing the whole population.

  9. Quantification of bufadienolides in the poisons of Rhinella marina and Rhaebo guttatus by HPLC-UV.

    PubMed

    Kerkhoff, Jacqueline; Noronha, Janaina da C; Bonfilio, Rudy; Sinhorin, Adilson P; Rodrigues, Domingos de J; Chaves, Mariana H; Vieira, Gerardo Magela

    2016-09-01

    Bufadienolides are the main active compounds in the Bufonidae family of frogs. Recent studies have demonstrated cytotoxic and/or antitumor activity in these molecules. A HPLC-DAD method was developed and validated to quantify three bufadienolides (telocinobufagin, marinobufagin and bufalin) in ethyl acetate extracts of the cane toad poison frogs and smooth-sided toad. The chromatographic analysis was performed on Phenomenex Luna C18 (250.0 × 4.6 mm, 5 μm), using gradient elution with acetonitrile and water, at a flow rate of 1.0 mL min(-1) and detection at 296 nm. The method showed linearity (r > 0.999) and adequate recovery values (86%-111%). The limits of quantification of bufadienolides were 7.4 μg mL(-1) for telocinobufagin, 4.2 μg mL(-1) for marinobufagin and 4.0 μg mL(-1) for bufalin. Intraday and interday values of the method were evaluated and presented standard deviation values lower than 5%. The method was successfully applied to quantify the bufadienolides in the venom extract of the cane toad, which showed a content of 60% of marinobufagin. The same method was not selective for the venom extract of the Rhaebo guttatus, despite being linear, accurate and precise, requiring the development of a technique that presents a greater selectivity. PMID:27390041

  10. HYDROPONIC VERSUS ROOTED GROWTH OF ZOSTERA MARINA L. (EELGRASS). (R828677C004)

    EPA Science Inventory

    The perspectives, information and conclusions conveyed in research project abstracts, progress reports, final reports, journal abstracts and journal publications convey the viewpoints of the principal investigator and may not represent the views and policies of ORD and EPA. Concl...

  11. Relationship between nitrogen concentration, light, and Zostera marina habitat quality and survival in southeastern Massachusetts estuaries.

    PubMed

    Benson, Jennifer L; Schlezinger, David; Howes, Brian L

    2013-12-15

    The relationship of eelgrass survival and habitat quality to water column nitrogen level, phytoplankton biomass, particulate matter, bottom light intensity, and light attenuation was quantified at 70 sites within 19 Massachusetts estuaries through 4 growing seasons (2007-2009, 2011). Sites included a range of eelgrass habitat quality, from stable productive eelgrass beds, to degraded beds, to areas that have lost all eelgrass coverage. Survival of transplanted eelgrass culms was used as a bio-indicator of habitat quality. Habitat quality based upon both changes in stability of eelgrass coverage and transplant survival was positively related to light intensity and percent transmittance. Transplant survival was consistent with habitat designations based upon long-term changes in eelgrass coverage, with lowest light coinciding with areas that lost eelgrass in earlier decades. Bottom light declined in proportion to increases in total nitrogen levels, phytoplankton biomass, and water column particulates determined from long-term water quality data. Field surveys indicated that eelgrass survival required bottom light ≥100 μE/m(2)/s and healthy eelgrass existed where tidally-averaged total nitrogen was less than 0.34 mg/L, equivalent to a mid-ebb tide water-column total nitrogen of <0.37 mg/L. Traditional sampling of water column nitrogen at mid-ebb tide was found to slightly overestimate the average nitrogen level over a complete tidal cycle. However, since long-term, ebb-tide and tidally-averaged total nitrogen are correlated, it is possible to use the monitoring average to guide management until tidally-averaged TN becomes available. Nitrogen thresholds that support eelgrass communities provide a fundamental tool for managing this habitat and for selection of transplant sites aimed at accelerating restoration of this resource under increasing nitrogen loading of the coastal zone.

  12. ASSESSING THE IMPACTS OF SALINITY AND NUTRIENT STRESS TO RUPPIA MARITIMA AND ZOSTERA MARINA

    EPA Science Inventory

    Healthy seagrass beds were once found throughout the shallow areas of Narragansett Bay, R.I. but have disappeared due to infilling, pollution and disease. In Greenwich Bay, a highly developed embayment within Narragansett Bay, Ruppia maritima has colonized an area on the norther...

  13. EFFECT OF EELGRASS (ZOSTERA MARINA) DENSITY ON THE FEEDING EFFICIENCY OF MUMMICHOG. (R825757)

    EPA Science Inventory

    The perspectives, information and conclusions conveyed in research project abstracts, progress reports, final reports, journal abstracts and journal publications convey the viewpoints of the principal investigator and may not represent the views and policies of ORD and EPA. Concl...

  14. 76 FR 18391 - Safety Zone; Texas International Boat Show Power Boat Races; Corpus Christi Marina, Corpus...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-04-04

    ... SECURITY Coast Guard 33 CFR Part 165 RIN 1625-AA00 Safety Zone; Texas International Boat Show Power Boat... American Tri-Hull Championship will consist of a series of power boat races for approximately 8-12 vessels... with power boat races. Basis and Purpose This safety zone is necessary to ensure the safety of...

  15. Influence of light, temperature and salinity on dissolved organic carbon exudation rates in Zostera marina L.

    EPA Science Inventory

    Seagrass carbon budgets provide valuable insight on the minimum requirements needed to maintain this valuable resource. Carbon budgets are a balance between C fixation, storage and loss rates, most of which are well characterized. However, relatively few measurements of dissolv...

  16. Eelgrass (Zostera marina L. ) transplant monitoring in Grays Harbor, Washington, after 29 months

    SciTech Connect

    Thom, R.M.

    1993-01-01

    In 1992, the US Army Corps of Engineers-Seattle District, placed oyster shell on tidal flats to mitigate for Dungeness crab mortalities caused by dredging in Grays Harbor, Washington, in 1990. Shell placement damaged isolated patches of eelgrass. To help assess the potential for the recovery of eelgrass in plots that may have been significantly affected, eelgrass transplanting experiments were initiated in 1990. Eelgrass was transplanted into 16 ponded areas that were created by the uneven placement of the shell. Transplanting was carried out in spring 1990, and sampling of the survival of the transplants was conducted in August of 1990 and 1991. Quantitative samples collected August 1992 indicated that transplanted eelgrass increased significantly in terms of shoot abundance since transplantation. The variation and rate of increase in shoot abundance among transplant plots can be partially explained by desiccation stress, with deeper ponds showing enhanced growth rate and plant size.

  17. Eelgrass (Zostera marina L.) transplant monitoring in Grays Harbor, Washington, after 29 months

    SciTech Connect

    Thom, R.M.

    1993-01-01

    In 1992, the US Army Corps of Engineers-Seattle District, placed oyster shell on tidal flats to mitigate for Dungeness crab mortalities caused by dredging in Grays Harbor, Washington, in 1990. Shell placement damaged isolated patches of eelgrass. To help assess the potential for the recovery of eelgrass in plots that may have been significantly affected, eelgrass transplanting experiments were initiated in 1990. Eelgrass was transplanted into 16 ponded areas that were created by the uneven placement of the shell. Transplanting was carried out in spring 1990, and sampling of the survival of the transplants was conducted in August of 1990 and 1991. Quantitative samples collected August 1992 indicated that transplanted eelgrass increased significantly in terms of shoot abundance since transplantation. The variation and rate of increase in shoot abundance among transplant plots can be partially explained by desiccation stress, with deeper ponds showing enhanced growth rate and plant size.

  18. Enumeration and characterization of nitrogen-fixing bacteria in an eelgrass (Zostera marina) bed.

    PubMed

    Shieh, W Y; Simidu, U; Maruyama, Y

    1989-11-01

    Marine nitrogen-fixing bacteria distributed in the eelgrass bed and seawater of Aburatsubo Inlet, Kanagawa, Japan were investigated using anaerobic and microaerobic enrichment culture methods. The present enrichment culture methods are simple and efficient for enumeration and isolation of nitrogen-fixing bacteria from marine environments. Mostprobable-number (MPN) values obtained for nitrogen-fixing bacteria ranged from 1.1×10(2) to 4.6×10(2)/ml for seawater, 4.0×10(4) to 4.3×10(5)/g wet wt for eelgrass-bed sediment, and 2.1 × 10(5) to 1.2 × 10(7)/g wet wt for eelgrass-root samples. More than 100 strains of halophilic, nitrogen-fixing bacteria belonging to the family Vibrionaceae were isolated from the MPN tubes. These isolates were roughly classified into seven groups on the basis of their physiological and biochemical characteristics. The majority of the isolates were assigned to the genusVibrio and one group to the genusPhotobacterium. However, there was also a group that could not be identified to the generic level. All isolates expressed nitrogen fixation activities under anaerobic conditions, and no organic growth factors were required for their activities.

  19. 76 FR 37650 - Safety Zone; 4th of July Festival Berkeley Marina Fireworks Display Berkeley, CA

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-06-28

    ... the dangers posed by the pyrotechnics used in these fireworks displays, the safety zones are necessary... in the effective date of this rule would expose mariners to the dangers posed by the pyrotechnics... protect spectators, vessels, and other property from the hazards associated with the pyrotechnics over...

  20. Population genetics features for persistent, but transient, Botryllus schlosseri (Urochordata) congregations in a central Californian marina.

    PubMed

    Karahan, Arzu; Douek, Jacob; Paz, Guy; Rinkevich, Baruch

    2016-08-01

    The colonial tunicate Botryllus schlosseri is a globally distributed, invasive ascidian that has colonized the Californian coasts of the USA during the mid-late 1940s and has, since the late 1980s, spread north to Washington. This study analyzes the population genetic characteristics of transient populations residing at the Elkhorn Yacht-Club (EYC), in central California (seven sessions, 1996-2008), which suffered periodic catastrophes caused by episodic fresh-water floods and a single sampling session (in the year 2001) of five West-Coast populations using the mtDNA COI gene and five microsatellite markers. EYC microsatellite results were further compared with the closely situated but persistent population of the Santa Cruz Harbor (SCH) to understand the impact on EYC population regeneration processes after the 2005-flood catastrophe. All microsatellites were highly polymorphic, revealing a large number of unique alleles at different sampling dates. Whereas pairwise θ did not reveal significant differences between the EYC time-series samplings, the overall θ was significant, as it was between all the 2001 West Coast populations. The most likely cluster number was 3 for the EYC samples whereas two K values were obtained (2 and 5) for the 2001 samples. Tajima's D and Fu's/Fs tests did not reject the null hypothesis for COI neutral evolution, except for in the EYC-2000, 2007 and two 2001 samplings. The wide geographical range of the analyses has indicated that following the EYC 2005-flood catastrophe, newcomers could have originated from neighboring populations, from deep-water colonies that may have escaped the 2005 low salinity event, or less expectedly, from far away West-Coast populations, while revealing that the SCH population is the most probable source for the EYC population.

  1. A Method for Calculating the Area of Zostera marina Leaves from Digital Images with Noise Induced by Humidity Content

    PubMed Central

    Leal-Ramirez, Cecilia

    2014-01-01

    Despite the ecological importance of eelgrass, nowadays anthropogenic influences have produced deleterious effects in many meadows worldwide. Transplantation plots are commonly used as a feasible remediation scheme. The characterization of eelgrass biomass and its dynamics is an important input for the assessment of the overall status of both natural and transplanted populations. Particularly, in restoration plots it is desirable to obtain nondestructive assessments of these variables. Allometric models allow the expression of above ground biomass and productivity of eelgrass in terms of leaf area, which provides cost effective and nondestructive assessments. Leaf area in eelgrass can be conveniently obtained by the product of associated length and width. Although these variables can be directly measured on most sampled leaves, digital image methods could be adapted in order to simplify measurements. Nonetheless, since width to length ratios in eelgrass leaves could be even negligible, noise induced by leaf humidity content could produce misidentification of pixels along the peripheral contour of leaves images. In this paper, we present a procedure aimed to produce consistent estimations of eelgrass leaf area in the presence of the aforementioned noise effects. Our results show that digital image procedures can provide reliable, nondestructive estimations of eelgrass leaf area. PMID:24892089

  2. CARBON AND NITROGEN ALLOCATION MODEL FOR THE SUB-TROPICAL SEAGRASS THALASSIA TESTUDINUM AND THE TEMPERATE SEAGRASS ZOSTER MARINA

    EPA Science Inventory

    Our understanding of seagrass physiology is based on crude estimates of production and biomass. To better understand the complex physiological relationships between the plants and the environment we developed a model of carbon and nitrogen allocation in the sub-tropical seagrass ...

  3. The effect of oyster aquaculture on seagrass (Zostera marina) at the estuarine landscape scale in Willapa Bay, Washington (USA)

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Both seagrasses and bivalve shellfish provide valuable ecosystem services including nursery habitat in estuaries worldwide. Seagrasses are protected by no-net-loss provisions in US federal and state regulations resulting in a precautionary approach by managers that avoids any direct impacts from d...

  4. An evaluation of leaf biomass : length ratio as a tool for nondestructive assessment in eelgrass (Zostera marina L.).

    PubMed

    Echavarria-Heras, Hector; Solana-Arellano, Elena; Lee, Kun-Seop; Hosokawa, Shinya; Franco-Vizcaíno, Ernesto

    2012-01-01

    The characterization of biomass and its dynamics provides valuable information for the assessment of natural and transplanted eelgrass populations. The need for simple, nondestructive assessments has led to the use of the leaf biomass-to-length ratio for converting leaf-length measurements, which can be easily obtained, to leaf growth rates through the plastochrone method. Using data on leaf biomass and length collected in three natural eelgrass populations and a mesocosm, we evaluated the suitability of a leaf weight-to-length ratio for nondestructive assessments. For the data sets considered, the isometric scaling that sustains the weight-to-length proxy always produced inconsistent fittings, and for leaf-lengths greater than a threshold value, the conversion of leaf length to biomass generated biased estimations. In contrast, an allometric scaling of leaf biomass and length was highly consistent in all the cases considered. And these nondestructive assessments generated reliable levels of reproducibility in leaf biomass for all the ranges of variability in leaf lengths. We argue that the use of allometric scaling for the representation of leaf biomass in terms of length provides a more reliable approach for estimating eelgrass biomass. PMID:22645432

  5. EFFECT OF AMBIENT LIGHT, AERIAL EXPOSURE, AND SEASON ON EELGRASS (ZOSTERA MARINA) METRICS IN A NORTHEAST PACIFIC (USA) ESTUARY

    EPA Science Inventory

    Although light is the principal factor controlling the lower depth limit of seagrasses, little attention has been given to how reduced winter lighting may affect intertidal plants. In the present study intertidal light intensity, temperature, and aerial exposure were measured ove...

  6. CO-OCCURRENCE OF METHYL- TERT-BUTYL ETHER (MTBE) AND BTEX COMPOUNDS AT MARINAS IN A LARGE RESEVOIR

    EPA Science Inventory

    Methyl tert-butyl ether (MTBE) is released into the environment as one of some gasoline components, not as a pure compound. BTEX compounds (benzene, tolune, ethylbenzene, and xylenes) are major volatile constituents found in gasoline and are water soluble and mobile. This study...

  7. Effects of ulvoid (Ulva spp.) accumulation on the structure and function of eelgrass (Zostera marina L.) bed.

    PubMed

    Sugimoto, Kenji; Hiraoka, Kiyonori; Ohta, Seiji; Niimura, Yoko; Terawaki, Toshinobu; Okada, Mitsumasa

    2007-10-01

    The objective of this study is to clarify the effect of ulvoid (Ulva spp.) accumulation on the structure and function of an eelgrass bed by the coast of Iwakuni, Seto Inland Sea, Japan. We monitored eelgrass shoot density and volume of ulvoid accumulation in the study site and evaluated effects of the accumulated ulvoid canopy on the percent survival, seedling density, growth rates, photosynthetic photon flux density (PPFD) and carbon contents of eelgrass. Eelgrass shoot density decreased by the accumulation of ulvoid. Also, seedling density decreased by the increase in the ulvoid volumes. Shoot density, seedling density and leaf elongation were negatively correlated with ulvoid volume. Carbon contents in eelgrass decreased by the accumulation of ulvoid (canopy height: 25cm). These results suggest that accumulation of ulvoid bloom has significant negative impacts on the structure and function of eelgrass bed, i.e. decreases in vegetative shoot density, seedling density, shoot height and growth rate.

  8. A method for calculating the area of Zostera marina leaves from digital images with noise induced by humidity content.

    PubMed

    Leal-Ramirez, Cecilia; Echavarria-Heras, Hector

    2014-01-01

    Despite the ecological importance of eelgrass, nowadays anthropogenic influences have produced deleterious effects in many meadows worldwide. Transplantation plots are commonly used as a feasible remediation scheme. The characterization of eelgrass biomass and its dynamics is an important input for the assessment of the overall status of both natural and transplanted populations. Particularly, in restoration plots it is desirable to obtain nondestructive assessments of these variables. Allometric models allow the expression of above ground biomass and productivity of eelgrass in terms of leaf area, which provides cost effective and nondestructive assessments. Leaf area in eelgrass can be conveniently obtained by the product of associated length and width. Although these variables can be directly measured on most sampled leaves, digital image methods could be adapted in order to simplify measurements. Nonetheless, since width to length ratios in eelgrass leaves could be even negligible, noise induced by leaf humidity content could produce misidentification of pixels along the peripheral contour of leaves images. In this paper, we present a procedure aimed to produce consistent estimations of eelgrass leaf area in the presence of the aforementioned noise effects. Our results show that digital image procedures can provide reliable, nondestructive estimations of eelgrass leaf area.

  9. An evaluation of leaf biomass : length ratio as a tool for nondestructive assessment in eelgrass (Zostera marina L.).

    PubMed

    Echavarria-Heras, Hector; Solana-Arellano, Elena; Lee, Kun-Seop; Hosokawa, Shinya; Franco-Vizcaíno, Ernesto

    2012-01-01

    The characterization of biomass and its dynamics provides valuable information for the assessment of natural and transplanted eelgrass populations. The need for simple, nondestructive assessments has led to the use of the leaf biomass-to-length ratio for converting leaf-length measurements, which can be easily obtained, to leaf growth rates through the plastochrone method. Using data on leaf biomass and length collected in three natural eelgrass populations and a mesocosm, we evaluated the suitability of a leaf weight-to-length ratio for nondestructive assessments. For the data sets considered, the isometric scaling that sustains the weight-to-length proxy always produced inconsistent fittings, and for leaf-lengths greater than a threshold value, the conversion of leaf length to biomass generated biased estimations. In contrast, an allometric scaling of leaf biomass and length was highly consistent in all the cases considered. And these nondestructive assessments generated reliable levels of reproducibility in leaf biomass for all the ranges of variability in leaf lengths. We argue that the use of allometric scaling for the representation of leaf biomass in terms of length provides a more reliable approach for estimating eelgrass biomass.

  10. Chlorophyll-deficient propagules of Avicennia marina and apparent longer term deterioration of mangrove fitness in oil-polluted sediments.

    PubMed

    Duke, Norman C; Watkinson, Andrew J

    2002-11-01

    A correlation between petroleum hydrocarbon concentrations in sediments and chlorophyll-deficient mutations in mangroves may occur also in Australian mangroves. Earlier reports of such mutations in the Caribbean area were evident in viviparous propagules of the common mangrove genera, Rhizophora, borne on otherwise normal trees. These mutant propagules were termed albinos' since they lacked chlorophyll and normal green coloration, leaving them white, yellow or red. The mutation was considered lethal since newly established albino seedlings appeared unable to survive more than a few months. Our preliminary investigation of mangroves in SE Queensland found a similar mutation in another common mangrove genus, Avicennia, and this was apparently also correlated with oil concentrations in sediments. Although, more evidence is required, an apparently similar relationship shows that whatever caused the mutations may act commonly across a diverse range of plant types in quite separate locations. How widespread might this mutation be in mangroves? How many genera and species are affected? Are all occurrences correlated with oil in sediments? Does oil cause the mutation? We discuss these important questions and the potentially serious implications to coastal management where high mutant densities may be indicative of longer term genetic deterioration of mangrove habitat in oil-polluted wetland environments. PMID:12523526

  11. Minimum light duration needed to maintain winter and summer adapted eelgrass (Zostera marina) as determined by mesocosm experiments

    EPA Science Inventory

    The intensity and duration of photosynthetically active radiation (PAR) is one of the primary factors determining seagrass survival. A commonly used metric to evaluate if there is sufficient PAR is Hsat, which is the number of hours per day in which photosynthetic pigments are s...

  12. USING STABLE ISOTOPES AND MECHANISTIC MODELS TO EXAMINE CARBON RESOURCE PARTITIONING IN THALASSIA TESTUDINUM AND ZOSTERA MARINA

    EPA Science Inventory

    Natural and anthropogenic stress negatively impact seagrass production and ecosystem function. Our goal is to better understand seagrass response to reduced light, nutrient and organic loading at a variety of ecological scales (individual to landscape) in order to help develop p...

  13. Effect of multiple stressors on eelgrass Zostera marina L. from the Pacific Northwest, USA: Manipulation of temperature and nutrients

    EPA Science Inventory

    Estuarine eelgrass beds in the Pacific Northwest (PNW) are being exposed to a range of natural and anthropogenic stressors and climate change. These stresses include increased temperatures, sea level rise, and high nutrient inputs, all of which may directly affect the productivi...

  14. CARBON, NITROGEN, PHOSPHORUS AND HEAVY METAL BUDGETS: HOW LARGE IS THE EELGRASS (ZOSTERA MARINA L.) SINK IN A TEMPERATE ESTUARY?

    EPA Science Inventory

    Seagrasses are often heralded as sentinel or indicator species because they are long-lived and integrate biological, physical and chemical parameters (Schlacher-Hoenlinger and Schlacher, 1998; Hoven et al., 1999; Pergent-Martini and Pergent, 2000). Several studies have shown ...

  15. 33 CFR 110.72a - Chester River, southeast of Chestertown, Md.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... Chestertown, Md. The waters of the Chester River enclosed by a line beginning at a point on the Rolph Marina... Point Marina pier; thence southwesterly along the Rolph Point Marina pier to the point of beginning....

  16. 33 CFR 110.72a - Chester River, southeast of Chestertown, Md.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... Chestertown, Md. The waters of the Chester River enclosed by a line beginning at a point on the Rolph Marina... Point Marina pier; thence southwesterly along the Rolph Point Marina pier to the point of beginning....

  17. 33 CFR 110.72a - Chester River, southeast of Chestertown, Md.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... Chestertown, Md. The waters of the Chester River enclosed by a line beginning at a point on the Rolph Marina... Point Marina pier; thence southwesterly along the Rolph Point Marina pier to the point of beginning....

  18. 33 CFR 110.72a - Chester River, southeast of Chestertown, Md.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... Chestertown, Md. The waters of the Chester River enclosed by a line beginning at a point on the Rolph Marina... Point Marina pier; thence southwesterly along the Rolph Point Marina pier to the point of beginning....

  19. 33 CFR 110.72a - Chester River, southeast of Chestertown, Md.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... Chestertown, Md. The waters of the Chester River enclosed by a line beginning at a point on the Rolph Marina... Point Marina pier; thence southwesterly along the Rolph Point Marina pier to the point of beginning....

  20. Taking It Outside: Science Inquiry.

    ERIC Educational Resources Information Center

    Weeks, Denise Jarrett, Ed.; Stepanek, Jennifer, Ed.

    2001-01-01

    This publication presents examples of inquiry-based science teaching in which students develop an understanding of the natural world. Sections include: (1) "Connecting Students to Science and the World" (Jennifer Stepanek); (2) "Apple Orchard Lush with Life's Lessons" (Helen Silvis); (3) "Student Scientists Team Up with the Pros" (Amy Sutton); (4)…