Science.gov

Sample records for marine operations structure

  1. Mobile marine operations structure

    SciTech Connect

    Bhalaik, A.; Braddick, P.W.; Brittin, D.S.; Johnson, G.L.

    1987-09-22

    This patent describes the process of installing a marine operations structure in a pre-determined sea floor location. The structure has a central core and a support base having at least two differently sloped ice wall surfaces for achieving fracturing of ice features, and having at least two series of circumferentially arranged ballast tanks. It consists of positioning the structure over a selected sea floor location by the use of at least three tug boats connected to the structure by tension cables arranged radially with respect to the structure; flooding a first series of lower ballast tanks in a sequential ballasting operation; flooding a second series of ballast tanks located at a higher elevation within the structure than the first series of ballast tanks; maintaining radial forces along the tension cables during the flooding steps; and after the structure has become founded on the bottom of the sea, pumping sea waver into fluid tanks some of which are located at an elevation above the water level.

  2. Mobile marine operations structure

    SciTech Connect

    Bhalaik, A.; Braddick, P.W.; Brittin, D.S.; Johnson, G.L.

    1988-02-16

    The process of fabricating a marine operations structure having a central core and first and second ice walls circumferentially positioned about the central core for fracturing ice features, with the second ice wall above and contiguous with the first ice wall, wherein the first and second ice walls are constructed according to the process is described comprising the steps of: providing a sloping support base system comprising radial bulkheads and circumferentially-positioned web frame series integrally connecting ice wall plating to the bulkheads and web frames series; integrally affixing an exposed cross grid system of interlocking and reinforcing members to the exterior surfaces of the ice wall plating to form first and second ice wall preforms with the members projecting outward from the plating; installing a slip-form adjacent to the ice wall preforms and exteriorly of the plating; pouring cement/aggregate slurry onto the ice wall preforms between the plating and the slip-form to cover the cross grid of interlocking and reinforcing members; moving the slip-form upwards as the void spaces between the slip-form and the ice wall plating are filled with cement/aggregate slurry; and permitting the cement/aggregate slurry to harden to form an orthotropic composite steel/concrete ice wall with an exposed concrete surface.

  3. Marine stratocumulus structure

    NASA Technical Reports Server (NTRS)

    Cahalan, Robert F.; Snider, Jack B.

    1989-01-01

    Thirty-three Landsat TM scenes of California stratocumulus cloud fields were acquired as part of the FIRE Marine Stratocumulus Intensive Field Observations in July 1987. They exhibit a wide variety of stratocumulus structures. Analysis has so far focused upon the July 7 scene, in which aircraft from NASA, NCAR, and the British Meteorological Office repeatedly gathered data across a stratocumulus-fair weather cumulus transition. The aircraft soundings validate the cloud base temperature threshold determined by spatial coherence analysis of the TM thermal band. Brightness variations in the stratocumulus region exhibit a -5/3 power-law decrease of the wavenumber spectra for scales larger than the cloud thickness, about 200 m, changing to a -3 power at smaller scales. Observations by an upward-looking three-channel microwave radiometer on San Nicolas Island also show the -5/3 power-law in total integrated liquid water, suggesting that the largest-scale TM brightness variations are primarily due to variations in the liquid water. The Kolmogorov 5/3 power suggests that for some purposes liquid water in turbulent stratocumulus clouds may be treated as a passive scalar, simply reflecting variations in vertical velocity. This may be tested using the velocities measured by the aircraft.

  4. 29 CFR 1926.605 - Marine operations and equipment.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 29 Labor 8 2010-07-01 2010-07-01 false Marine operations and equipment. 1926.605 Section 1926.605 Labor Regulations Relating to Labor (Continued) OCCUPATIONAL SAFETY AND HEALTH ADMINISTRATION... Equipment, and Marine Operations § 1926.605 Marine operations and equipment. (a) Material...

  5. 75 FR 12734 - Taking and Importing Marine Mammals; Taking Marine Mammals Incidental to Operation of Offshore...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-03-17

    ... repair and maintenance; and emergency and oil spill response training. Sections 1 and 2 of BP's... occurrence of oil spills. Petroleum development and associated activities in marine waters introduce sound... NMFS, BP requests authorization to take marine mammals incidental to operation of offshore oil and...

  6. Marine Nucleosides: Structure, Bioactivity, Synthesis and Biosynthesis

    PubMed Central

    Huang, Ri-Ming; Chen, Yin-Ning; Zeng, Ziyu; Gao, Cheng-Hai; Su, Xiangdong; Peng, Yan

    2014-01-01

    Nucleosides are glycosylamines that structurally form part of nucleotide molecules, the building block of DNA and RNA. Both nucleosides and nucleotides are vital components of all living cells and involved in several key biological processes. Some of these nucleosides have been obtained from a variety of marine resources. Because of the biological importance of these compounds, this review covers 68 marine originated nucleosides and their synthetic analogs published up to June 2014. The review will focus on the structures, bioactivities, synthesis and biosynthetic processes of these compounds. PMID:25474189

  7. Top marine predators track Lagrangian coherent structures

    PubMed Central

    Tew Kai, Emilie; Rossi, Vincent; Sudre, Joel; Weimerskirch, Henri; Lopez, Cristobal; Hernandez-Garcia, Emilio; Marsac, Francis; Garçon, Veronique

    2009-01-01

    Meso- and submesoscales (fronts, eddies, filaments) in surface ocean flow have a crucial influence on marine ecosystems. Their dynamics partly control the foraging behavior and the displacement of marine top predators (tuna, birds, turtles, and cetaceans). In this work we focus on the role of submesoscale structures in the Mozambique Channel in the distribution of a marine predator, the Great Frigatebird. Using a newly developed dynamic concept, the finite-size Lyapunov exponent (FSLE), we identified Lagrangian coherent structures (LCSs) present in the surface flow in the channel over a 2-month observation period (August and September 2003). By comparing seabird satellite positions with LCS locations, we demonstrate that frigatebirds track precisely these structures in the Mozambique Channel, providing the first evidence that a top predator is able to track these FSLE ridges to locate food patches. After comparing bird positions during long and short trips and different parts of these trips, we propose several hypotheses to understand how frigatebirds can follow these LCSs. The birds might use visual and/or olfactory cues and/or atmospheric current changes over the structures to move along these biologic corridors. The birds being often associated with tuna schools around foraging areas, a thorough comprehension of their foraging behavior and movement during the breeding season is crucial not only to seabird ecology but also to an appropriate ecosystemic approach to fisheries in the channel. PMID:19416811

  8. 76 FR 35995 - Taking and Importing Marine Mammals; Taking Marine Mammals Incidental to Operation and...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-06-21

    ... Federal Register (76 FR 34157; FR Doc. 2011-14614). The period of effectiveness in that notice is listed... preamble, FR Doc. 2011-14614, published June 13, 2011, at 76 FR 34157, is corrected as follows: 0 1. On... Mammals; Taking Marine Mammals Incidental to Operation and Maintenance of the Neptune Liquefied...

  9. 78 FR 57368 - Taking and Importing Marine Mammals: Taking Marine Mammals Incidental to Navy Operations of...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-09-18

    ... operations of SURTASS LFA sonar are in effect through August 15, 2017 (77 FR 50290, August 20, 2012) and are... issued on August 15, 2012 (77 FR 51969, August 28, 2012), for the taking of marine mammals incidental to... the north-central Pacific Ocean under the regulations issued on August 15, 2012 (77 FR 50290,...

  10. Altimeter Data for Operational Use in the Marine Environment

    NASA Technical Reports Server (NTRS)

    Digby, Susan; Antczak, Thomas; Leben, Robert; Born, George; Barth, Suzanne; Cheney, Robert; Foley, David; Goni, Gustavo Jorge; Jacobs, Gregg; Shay, Nick

    1999-01-01

    TOPEX/Poseidon has been collecting altimeter data continuously since October 1992. Altimeter data have been used to produce maps of sea surface height, geostrophic velocity, significant wave height, and wind speed. This information is of proven use to mariners as well as to the scientific community. Uses of the data include commercial and recreational vessel routing, ocean acoustics, input to geographic information systems developed for the fishing industry, identification of marine mammal habitats, fisheries management, and monitoring ocean debris. As with sea surface temperature data from the Advanced Very High Resolution Radiometer (AVHRR) in the late 1980s and early 1990s, altimeter data from TOPEX/Poseidon and ERS-1 and -2 are in the process of being introduced to the marine world for operational maritime use. It is anticipated that over the next few years companies that specialize in producing custom products for shipping agencies, fisheries and yacht race competitors will be incorporating altimeter data into their products. The data are also being incorporated into weather and climate forecasts by operational agencies both in the US and Europe. This paper will discuss these products, their uses, operational demonstrations and means of accessing the data.

  11. Mariner Mars 1971 project. Volume 3: Mission operations system implementation and standard mission flight operations

    NASA Technical Reports Server (NTRS)

    1973-01-01

    The Mariner Mars 1971 mission which was another step in the continuing program of planetary exploration in search of evidence of exobiological activity, information on the origin and evolution of the solar system, and basic science data related to the study of planetary physics, geology, planetology, and cosmology is reported. The mission plan was designed for two spacecraft, each performing a separate but complementary mission. However, a single mission plan was actually used for Mariner 9 because of failure of the launch vehicle for the first spacecraft. The implementation is described, of the Mission Operations System, including organization, training, and data processing development and operations, and Mariner 9 spacecraft cruise and orbital operations through completion of the standard mission from launch to solar occultation in April 1972 are discussed.

  12. Applications of Mass Spectrometry to Structural Analysis of Marine Oligosaccharides

    PubMed Central

    Lang, Yinzhi; Zhao, Xia; Liu, Lili; Yu, Guangli

    2014-01-01

    Marine oligosaccharides have attracted increasing attention recently in developing potential drugs and biomaterials for their particular physical and chemical properties. However, the composition and sequence analysis of marine oligosaccharides are very challenging for their structural complexity and heterogeneity. Mass spectrometry (MS) has become an important technique for carbohydrate analysis by providing more detailed structural information, including molecular mass, sugar constituent, sequence, inter-residue linkage position and substitution pattern. This paper provides an overview of the structural analysis based on MS approaches in marine oligosaccharides, which are derived from some biologically important marine polysaccharides, including agaran, carrageenan, alginate, sulfated fucan, chitosan, glycosaminoglycan (GAG) and GAG-like polysaccharides. Applications of electrospray ionization mass spectrometry (ESI-MS) are mainly presented and the general applications of matrix-assisted laser desorption/ionization mass spectrometry (MALDI-MS) are also outlined. Some technical challenges in the structural analysis of marine oligosaccharides by MS have also been pointed out. PMID:24983643

  13. Operant psychology makes a splash--in marine mammal training (1955-1965).

    PubMed

    Gillaspy, James Arthur; Brinegar, Jennifer L; Bailey, Robert E

    2014-01-01

    Despite the wide spread use of operant conditioning within marine animal training, relatively little is known about this unique application of behavioral technology. This article explores the expansion of operant psychology to commercial marine animal training from 1955 to 1965, specifically at marine parks such as Marine Studios Florida, Marineland of the Pacific, Sea Life Park, and SeaWorld. The contributions of Keller and Marian Breland and their business Animal Behavior Enterprises (ABE) as well as other early practitioners of behavioral technology are reviewed. We also describe how operant technology was introduced and formalized into procedures that have become the cornerstone of marine animal training and entertainment. The rapid growth of the marine park industry during this time was closely linked to the spread of behavioral technology. The expansion of operant training methods within marine animal training is a unique success story of behavioral technology.

  14. MRNIDX - Marine Data Index: Database Description, Operation, Retrieval, and Display

    USGS Publications Warehouse

    Paskevich, Valerie F.

    1982-01-01

    A database referencing the location and content of data stored on magnetic medium was designed to assist in the indexing of time-series and spatially dependent marine geophysical data collected or processed by the U. S. Geological Survey. The database was designed and created for input to the Geologic Retrieval and Synopsis Program (GRASP) to allow selective retrievals of information pertaining to location of data, data format, cruise, geographical bounds and collection dates of data. This information is then used to locate the stored data for administrative purposes or further processing. Database utilization is divided into three distinct operations. The first is the inventorying of the data and the updating of the database, the second is the retrieval of information from the database, and the third is the graphic display of the geographical boundaries to which the retrieved information pertains.

  15. Using Google Earth in Marine Research and Operational Decision Support

    NASA Astrophysics Data System (ADS)

    Blower, J. D.; Bretherton, D.; Haines, K.; Liu, C.; Rawlings, C.; Santokhee, A.; Smith, I.

    2006-12-01

    A key advantage of Virtual Globes ("geobrowsers") such as Google Earth is that they can display many different geospatial data types at a huge range of spatial scales. In this demonstration and poster display we shall show how marine data from disparate sources can be brought together in a geobrowser in order to support both scientific research and operational search and rescue activities. We have developed the Godiva2 interactive website for browsing and exploring marine data, mainly output from supercomputer analyses and predictions of ocean circulation. The user chooses a number of parameters (e.g. sea temperature at 100m depth on 1st July 2006) and can load an image of the resulting data in Google Earth. Through the use of an automatically-refreshing NetworkLink the user can explore the whole globe at a very large range of spatial scales: the displayed data will automatically be refreshed to show data at increasingly fine resolution as the user zooms in. This is a valuable research tool for exploring these terabyte- scale datasets. Many coastguard organizations around the world use SARIS, a software application produced by BMT Cordah Ltd., to predict the drift pattern of objects in the sea in order to support search and rescue operations. Different drifting objects have different trajectories depending on factors such as their buoyancy and windage and so a computer model, supported by meteorological and oceanographic data, is needed to help rescuers locate their targets. We shall demonstrate how Google Earth is used to display output from the SARIS model (including the search target location and associated error polygon) alongside meteorological data (wind vectors) and oceanographic data (sea temperature, surface currents) from Godiva2 in order to support decision-making. We shall also discuss the limitations of using Google Earth in this context: these include the difficulties of working with time- dependent data and the need to access data securely. essc

  16. Core operational Sentinel-3 marine data product services as part of the Copernicus Space Component

    NASA Astrophysics Data System (ADS)

    Bonekamp, Hans; Montagner, Francois; Santacesaria, Vincenzo; Nogueira Loddo, Carolina; Wannop, Sally; Tomazic, Igor; O'Carroll, Anne; Kwiatkowska, Ewa; Scharroo, Remko; Wilson, Hilary

    2016-06-01

    This paper describes the marine data available from the Marine Centre, part of the Sentinel-3 Payload Data Ground Segment, located at the European Organisation for the Exploitation of Meteorological Satellites (EUMETSAT). The Marine Centre together with the existing EUMETSAT facilities provides a centralised operational service for operational oceanography. These descriptions of the marine data are produced with a focus on a user service perspective. They include the scientific and operational feedback mechanisms on the performance of the services as well as practical information and user support mechanisms.

  17. Mediterranean monitoring and forecasting operational system for Copernicus Marine Service

    NASA Astrophysics Data System (ADS)

    Coppini, Giovanni; Drudi, Massimiliano; Korres, Gerasimos; Fratianni, Claudia; Salon, Stefano; Cossarini, Gianpiero; Clementi, Emanuela; Zacharioudaki, Anna; Grandi, Alessandro; Delrosso, Damiano; Pistoia, Jenny; Solidoro, Cosimo; Pinardi, Nadia; Lecci, Rita; Agostini, Paola; Cretì, Sergio; Turrisi, Giuseppe; Palermo, Francesco; Konstantinidou, Anna; Storto, Andrea; Simoncelli, Simona; Di Pietro, Pier Luigi; Masina, Simona; Ciliberti, Stefania Angela; Ravdas, Michalis; Mancini, Marco; Aloisio, Giovanni; Fiore, Sandro; Buonocore, Mauro

    2016-04-01

    The MEDiterranean Monitoring and Forecasting Center (Med-MFC) is part of the Copernicus Marine Environment Monitoring Service (CMEMS, http://marine.copernicus.eu/), provided on an operational mode by Mercator Ocean in agreement with the European Commission. Specifically, Med MFC system provides regular and systematic information about the physical state of the ocean and marine ecosystems for the Mediterranean Sea. The Med-MFC service started in May 2015 from the pre-operational system developed during the MyOcean projects, consolidating the understanding of regional Mediterranean Sea dynamics, from currents to biogeochemistry to waves, interfacing with local data collection networks and guaranteeing an efficient link with other Centers in Copernicus network. The Med-MFC products include analyses, 10 days forecasts and reanalysis, describing currents, temperature, salinity, sea level and pelagic biogeochemistry. Waves products will be available in MED-MFC version in 2017. The consortium, composed of INGV (Italy), HCMR (Greece) and OGS (Italy) and coordinated by the Euro-Mediterranean Centre on Climate Change (CMCC, Italy), performs advanced R&D activities and manages the service delivery. The Med-MFC infrastructure consists of 3 Production Units (PU), for Physics, Biogechemistry and Waves, a unique Dissemination Unit (DU) and Archiving Unit (AU) and Backup Units (BU) for all principal components, guaranteeing a resilient configuration of the service and providing and efficient and robust solution for the maintenance of the service and delivery. The Med-MFC includes also an evolution plan, both in terms of research and operational activities, oriented to increase the spatial resolution of products, to start wave products dissemination, to increase temporal extent of the reanalysis products and improving ocean physical modeling for delivering new products. The scientific activities carried out in 2015 concerned some improvements in the physical, biogeochemical and

  18. Lodopyridone, a Structurally Unprecedented Alkaloid from a Marine Actinomycete

    PubMed Central

    Maloney, Katherine N.; MacMillan, John B.; Kauffman, Christopher A.; Jensen, Paul R.; DiPasquale, Antonio G.; Rheingold, Arnold L.; Fenical, William

    2010-01-01

    Chemical examination of the secondary metabolites of a marine Saccharomonospora sp., isolated from marine sediments collected at the mouth of the La Jolla Submarine Canyon, yielded the unprecedented alkaloid lodopyridone (1). The low proton-to-carbon ratio of 1 precluded structure elucidation by NMR spectroscopic methods, thus the structure was defined by X-ray crystallography. Lodopyridone is cytotoxic to HCT-116 human colon cancer cells with IC50 = 3.6 μM. PMID:19883103

  19. 77 FR 6771 - Taking and Importing Marine Mammals: Taking Marine Mammals Incidental to U.S. Navy Operations of...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-02-09

    .... SUPPLEMENTARY INFORMATION: NMFS refers the reader to the January 6, 2012, Federal Register notice (77 FR 842... Mammals: Taking Marine Mammals Incidental to U.S. Navy Operations of Surveillance Towed Array Sensor... harassment, incidental to conducting operations of Surveillance Towed Array Sensor System (SURTASS)...

  20. Marine Structural Biomaterials in Medical Biomimicry.

    PubMed

    Green, David W; Lee, Jong-Min; Jung, Han-Sung

    2015-10-01

    Marine biomaterials display properties, behaviors, and functions that have not been artificially matched in relation to their hierarchical construction, crack-stopping properties, growth adaptation, and energy efficiency. The discovery and understanding of such features that are characteristic of natural biomaterials can be used to manufacture more energy-efficient and lightweight materials. However, a more detailed understanding of the design of natural biomaterials with good performance and the mechanism of their design is required. Far-reaching biomolecular characterization of biomaterials and biostructures from the ocean world is possible with sophisticated analytical methods, such as whole-genome RNA-seq, and de novo transcriptome sequencing and mass spectrophotometry-based sequencing. In combination with detailed material characterization, the elements in newly discovered biomaterials and their properties can be reconstituted into biomimetic or bio-inspired materials. A major aim of harnessing marine biomaterials is their translation into biomimetic counterparts. To achieve full translation, the genome, proteome, and hierarchical material characteristics, and their profiles in space and time, have to be associated to allow for smooth biomimetic translation. In this article, we highlight the novel science of marine biomimicry from a materials perspective. We focus on areas of material design and fabrication that have excelled in marine biological models, such as embedded interfaces, chiral organization, and the use of specialized composite material-on-material designs. Our emphasis is primarily on key materials with high value in healthcare in which we evaluate their future prospects. Marine biomaterials are among the most exquisite and powerful aspects in materials science today.

  1. Marine Structural Biomaterials in Medical Biomimicry.

    PubMed

    Green, David W; Lee, Jong-Min; Jung, Han-Sung

    2015-10-01

    Marine biomaterials display properties, behaviors, and functions that have not been artificially matched in relation to their hierarchical construction, crack-stopping properties, growth adaptation, and energy efficiency. The discovery and understanding of such features that are characteristic of natural biomaterials can be used to manufacture more energy-efficient and lightweight materials. However, a more detailed understanding of the design of natural biomaterials with good performance and the mechanism of their design is required. Far-reaching biomolecular characterization of biomaterials and biostructures from the ocean world is possible with sophisticated analytical methods, such as whole-genome RNA-seq, and de novo transcriptome sequencing and mass spectrophotometry-based sequencing. In combination with detailed material characterization, the elements in newly discovered biomaterials and their properties can be reconstituted into biomimetic or bio-inspired materials. A major aim of harnessing marine biomaterials is their translation into biomimetic counterparts. To achieve full translation, the genome, proteome, and hierarchical material characteristics, and their profiles in space and time, have to be associated to allow for smooth biomimetic translation. In this article, we highlight the novel science of marine biomimicry from a materials perspective. We focus on areas of material design and fabrication that have excelled in marine biological models, such as embedded interfaces, chiral organization, and the use of specialized composite material-on-material designs. Our emphasis is primarily on key materials with high value in healthcare in which we evaluate their future prospects. Marine biomaterials are among the most exquisite and powerful aspects in materials science today. PMID:25905922

  2. Sensor Nanny, data management services for marine observation operators

    NASA Astrophysics Data System (ADS)

    Loubrieu, Thomas; Détoc, Jérôme; Thorel, Arnaud; Azelmat, Hamza

    2016-04-01

    In marine sciences, the diversity of observed properties (from water physic to contaminants in observed in biological individuals or sediment) and observation methodologies (from manned sampling and analysis in labs to large automated networks of homogeneous platforms) requires different expertises and thus dedicated scientific program (ARGO, EMSO, GLOSS, GOSHIP, OceanSites, GOSUD, Geotrace, SOCAT, member state environment monitoring networks, experimental research…). However, all of them requires similar IT services to support the maintenance of their network (calibrations, deployment strategy, spare part management...) and their data management. In Europe, the National Oceanographic Data Centres coordinated by the IOC/IODE and SeaDataNet provide reliable reference services (e.g. vocabularies, contact directories), standards and long term data preservation. Besides the regional operational oceanographic centres (ROOSes) coordinated by EuroGOOS and Copernicus In-Situ Thematic Assembly Centre provide efficient data management for near real time or delayed mode services focused on physics and bio-geo-chemistry in the water column. Other e-infrastructures, such as euroBIS for biodiversity, are focused on specific disciplines. Beyond the current scope of these well established infrastructures, Sensor Nanny is a web application providing services for operators of observatories to manage their observations on the "cloud". The application stands against the reference services (vocabularies, organization directory) and standard profiles (OGC/Sensor Web Enablement) provided by SeaDataNet. The application provides an on-line editor to graphically describe, literally draw, their observatory (acquisition and processing systems). The observatory description is composed by the user from a palette of hundreds of pre-defined sensors or hardware linked together. In addition, the data providers can upload their data in CSV and netCDF formats on a dropbox-like system. The latest

  3. Marine Chemical Ecology: Chemical Signals and Cues Structure Marine Populations, Communities, and Ecosystems

    NASA Astrophysics Data System (ADS)

    Hay, Mark E.

    2009-01-01

    Chemical cues constitute much of the language of life in the sea. Our understanding of biotic interactions and their effects on marine ecosystems will advance more rapidly if this language is studied and understood. Here, I review how chemical cues regulate critical aspects of the behavior of marine organisms from bacteria to phytoplankton to benthic invertebrates and water column fishes. These chemically mediated interactions strongly affect population structure, community organization, and ecosystem function. Chemical cues determine foraging strategies, feeding choices, commensal associations, selection of mates and habitats, competitive interactions, and transfer of energy and nutrients within and among ecosystems. In numerous cases, the indirect effects of chemical signals on behavior have as much or more effect on community structure and function as the direct effects of consumers and pathogens. Chemical cues are critical for understanding marine systems, but their omnipresence and impact are inadequately recognized.

  4. Marine Chemical Ecology: Chemical Signals and Cues Structure Marine Populations, Communities, and Ecosystems

    PubMed Central

    Hay, Mark E.

    2012-01-01

    Chemical cues constitute much of the language of life in the sea. Our understanding of biotic interactions and their effects on marine ecosystems will advance more rapidly if this language is studied and understood. Here, I review how chemical cues regulate critical aspects of the behavior of marine organisms from bacteria to phytoplankton to benthic invertebrates and water column fishes. These chemically mediated interactions strongly affect population structure, community organization, and ecosystem function. Chemical cues determine foraging strategies, feeding choices, commensal associations, selection of mates and habitats, competitive interactions, and transfer of energy and nutrients within and among ecosystems. In numerous cases, the indirect effects of chemical signals on behavior have as much or more effect on community structure and function as the direct effects of consumers and pathogens. Chemical cues are critical for understanding marine systems, but their omnipresence and impact are inadequately recognized. PMID:21141035

  5. Marine chemical ecology: chemical signals and cues structure marine populations, communities, and ecosystems.

    PubMed

    Hay, Mark E

    2009-01-01

    Chemical cues constitute much of the language of life in the sea. Our understanding of biotic interactions and their effects on marine ecosystems will advance more rapidly if this language is studied and understood. Here, I review how chemical cues regulate critical aspects of the behavior of marine organisms from bacteria to phytoplankton to benthic invertebrates and water column fishes. These chemically mediated interactions strongly affect population structure, community organization, and ecosystem function. Chemical cues determine foraging strategies, feeding choices, commensal associations, selection of mates and habitats, competitive interactions, and transfer of energy and nutrients within and among ecosystems. In numerous cases, the indirect effects of chemical signals on behavior have as much or more effect on community structure and function as the direct effects of consumers and pathogens. Chemical cues are critical for understanding marine systems, but their omnipresence and impact are inadequately recognized.

  6. 77 FR 11493 - Taking of Threatened or Endangered Marine Mammals Incidental to Commercial Fishing Operations...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-02-27

    ... Eastern U.S. stock of Steller sea lions (75 FR 81972). Along with issuing the permit, NMFS made a final... of Steller sea lions (December 29, 2010; 75 FR 81972). Recovery Plans A Recovery Plan for Steller sea... Marine Mammals Incidental to Fishing Operations Fishery Category Marine mammal stock HI deep-set...

  7. 76 FR 53884 - Taking and Importing Marine Mammals; Taking Marine Mammals Incidental to U.S. Navy Operations of...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-08-30

    ... 2007 on July 16, 2002 (67 FR 46712), and published the second rule effective from August 2007 through August 2012 on August 21, 2007 (72 FR 46846). For this third rule making, the Navy is proposing to... Marine Mammals Incidental to U.S. Navy Operations of Surveillance Towed Array Sensor System Low...

  8. Chemical Structures and Bioactivities of Sulfated Polysaccharides from Marine Algae

    PubMed Central

    Jiao, Guangling; Yu, Guangli; Zhang, Junzeng; Ewart, H. Stephen

    2011-01-01

    Sulfated polysaccharides and their lower molecular weight oligosaccharide derivatives from marine macroalgae have been shown to possess a variety of biological activities. The present paper will review the recent progress in research on the structural chemistry and the bioactivities of these marine algal biomaterials. In particular, it will provide an update on the structural chemistry of the major sulfated polysaccharides synthesized by seaweeds including the galactans (e.g., agarans and carrageenans), ulvans, and fucans. It will then review the recent findings on the anticoagulant/antithrombotic, antiviral, immuno-inflammatory, antilipidemic and antioxidant activities of sulfated polysaccharides and their potential for therapeutic application. PMID:21566795

  9. Fulfilling EU Laws to Ensure Marine Mammal Protection During Marine Renewable Construction Operations in Scotland.

    PubMed

    Dolman, Sarah J; Green, Mick; Gregerson, Sarah; Weir, Caroline R

    2016-01-01

    Large-scale offshore renewable energy infrastructure construction in Scottish waters is anticipated in coming decades. An approach being pursued, with a view to preventing short-range marine mammal injury, is the introduction of additional noise sources to intentionally disturb and displace animals from renewable sites over the construction period. To date, no full and transparent consideration has been given to the long-term cost benefits of noise reduction compared with noise-inducing mitigation techniques. It has yet to be determined if the introduction of additional noise is consistent with the objectives of the EU Habitats Directive and the Marine Strategy Framework Directive.

  10. Fulfilling EU Laws to Ensure Marine Mammal Protection During Marine Renewable Construction Operations in Scotland.

    PubMed

    Dolman, Sarah J; Green, Mick; Gregerson, Sarah; Weir, Caroline R

    2016-01-01

    Large-scale offshore renewable energy infrastructure construction in Scottish waters is anticipated in coming decades. An approach being pursued, with a view to preventing short-range marine mammal injury, is the introduction of additional noise sources to intentionally disturb and displace animals from renewable sites over the construction period. To date, no full and transparent consideration has been given to the long-term cost benefits of noise reduction compared with noise-inducing mitigation techniques. It has yet to be determined if the introduction of additional noise is consistent with the objectives of the EU Habitats Directive and the Marine Strategy Framework Directive. PMID:26610963

  11. Marine Hydrokinetic Turbines operating in a streamwise tandem arrangement

    NASA Astrophysics Data System (ADS)

    Beninati, M. L.; Markovic, U. V.; Krane, M. H.

    2015-12-01

    A laboratory-scale study of the impact of separation distance on the performance of marine hydrokinetic turbines in a streamwise tandem arrangement is described. The study aims to give guidance concerning minimum, or optimal, turbine spacing in arrays. Testing was conducted in the hydraulic flume facility (9.8 m long, 1.2 m wide and 0.4 m deep) at Bucknell University. The devices were two-bladed model marine turbines with a rotor diameter of 0.1 m. For each separation distance, rotational speed of each device and velocity profiles of flow incident on the downstream turbine were measured. Results suggest limits for the minimum spacing between two turbines arranged in a tandem array.

  12. [New view on the population genetic structure of marine fish].

    PubMed

    Salmenkova, E A

    2011-11-01

    The view on homogeneous population genetic structure in many marine fish with high mobility has changed significantly during the last ten years. Molecular genetic population studies over the whole ranges of such species as Atlantic herring and Atlantic cod showed a complex picture of spatial differentiation both on the macrogeographic and, in many areas, on the microgeographic scale, although the differentiation for neutral molecular markers was low. It was established that the migration activity of such fish is constrained in many areas of the species range by hydrological and physicochemical transition zones (environmental gradients), as well as gyres in the spawning regions. Natal homing was recorded in a number of marine fish species. Existing in marine fish constraints of gene migration and a very high variance of reproductive success determine a significantly smaller proportion of effective reproductive size of their populations in the total population size, which generates more complex abundance dynamics than assumed earlier. The various constraints on gene migration and natal homing in marine fish promote the formation of local adaptations at ecologically important phenotypic traits. Effects of selection underlying adaptations are actively investigated in marine fish on the genomic level, using approaches of population genomics. The knowledge of adaptive intraspecific structure enables understanding the ecological and evolutionary processes, that influence biodiversity and providing spatial frames for conservation of genetic resources under commercial exploitation. Contemporary views on the population genetic and adaptive structures or biocomplexity in marine fish support and develop the main principles of the conception of systemic organization of the species and its regional populations, which were advanced by Yu.P. Altukhov and Yu.G. Rychkov.

  13. Meroterpenes from Marine Invertebrates: Structures, Occurrence, and Ecological Implications

    PubMed Central

    Menna, Marialuisa; Imperatore, Concetta; D’Aniello, Filomena; Aiello, Anna

    2013-01-01

    Meroterpenes are widely distributed among marine organisms; they are particularly abundant within brown algae, but other important sources include microorganisms and invertebrates. In the present review the structures and bioactivities of meroterpenes from marine invertebrates, mainly sponges and tunicates, are summarized. More than 300 molecules, often complex and with unique skeletons originating from intra- and inter-molecular cyclizations, and/or rearrangements, are illustrated. The reported syntheses are mentioned. The issue of a potential microbial link to their biosynthesis is also shortly outlined. PMID:23685889

  14. Saturation point structure of marine stratocumulus clouds

    NASA Technical Reports Server (NTRS)

    Boers, Reinout; Betts, Alan K.

    1988-01-01

    An investigation of the microstructure of a Pacific stratocumulus capped boundary layer is presented. A complex structure of three branches, identified using conserved variable diagrams, is found to correspond well to a conceptual model for the unstable, radiatively cooled cloud topped boundary layer. A simple conditional sampling method was used to identify saturation point pairs for ascending and descending branches of the internal boundary layer circulation. Results indicate a primary circulation scale of 5 km and provide a reasonable cloud top entrainment rate of 1 cm/s.

  15. 75 FR 8305 - Taking of Threatened or Endangered Marine Mammals Incidental to Commercial Fishing Operations...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-02-24

    ... deep-set fishery operates year-round. Hawaii-based longline vessels vary their fishing grounds... equator and 40 N and longitudes 140 and 180 W; however, the vast majority of deep-set fishing occurs south... Mammals Incidental to Commercial Fishing Operations; Proposed Permit AGENCY: National Marine...

  16. 40 CFR 63.651 - Marine tank vessel loading operation provisions.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... (CONTINUED) National Emission Standards for Hazardous Air Pollutants From Petroleum Refineries § 63.651... this section, each owner or operator of a marine tank vessel loading operation located at a petroleum refinery shall comply with the requirements of §§ 63.560 through 63.568. (b) As used in this section,...

  17. 40 CFR 63.651 - Marine tank vessel loading operation provisions.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... (CONTINUED) National Emission Standards for Hazardous Air Pollutants From Petroleum Refineries § 63.651... this section, each owner or operator of a marine tank vessel loading operation located at a petroleum refinery shall comply with the requirements of §§ 63.560 through 63.568. (b) As used in this section,...

  18. 40 CFR 63.651 - Marine tank vessel loading operation provisions.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... (CONTINUED) National Emission Standards for Hazardous Air Pollutants From Petroleum Refineries § 63.651... this section, each owner or operator of a marine tank vessel loading operation located at a petroleum refinery shall comply with the requirements of §§ 63.560 through 63.568. (b) As used in this section,...

  19. 76 FR 39705 - Taking and Importing Marine Mammals; Taking Marine Mammals Incidental to Operation of Offshore...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-07-06

    ... continuation of drilling, production, and emergency training operations but no construction or activities of... construction, maintenance, and drilling, as well as vehicles operating on the ice, vessels, aircraft... associated with Northstar include a gravel island work surface for drilling and oil production facilities...

  20. Efficient tools for marine operational forecast and oil spill tracking.

    PubMed

    Marta-Almeida, Martinho; Ruiz-Villarreal, Manuel; Pereira, Janini; Otero, Pablo; Cirano, Mauro; Zhang, Xiaoqian; Hetland, Robert D

    2013-06-15

    Ocean forecasting and oil spill modelling and tracking are complex activities requiring specialised institutions. In this work we present a lighter solution based on the Operational Ocean Forecast Python Engine (OOFε) and the oil spill model General NOAA Operational Modelling Environment (GNOME). These two are robust relocatable and simple to implement and maintain. Implementations of the operational engine in three different regions with distinct oceanic systems, using the ocean model Regional Ocean Modelling System (ROMS), are described, namely the Galician region, the southeastern Brazilian waters and the Texas-Louisiana shelf. GNOME was able to simulate the fate of the Prestige oil spill (Galicia) and compared well with observations of the Krimsk accident (Texas). Scenarios of hypothetical spills in Campos Basin (Brazil) are illustrated, evidencing the sensitiveness to the dynamical system. OOFε and GNOME are proved to be valuable, efficient and low cost tools and can be seen as an intermediate stage towards more complex operational implementations of ocean forecasting and oil spill modelling strategies. PMID:23643409

  1. Ecosystem service provision: an operational way for marine biodiversity conservation and management.

    PubMed

    Cognetti, Giuseppe; Maltagliati, Ferruccio

    2010-11-01

    Since no extensive conceptual framework has been developed on the issues of ecosystem service (ES) and service provider (SP) in the marine environment, we have made an attempt to apply these to the conservation and management of marine biodiversity. Within this context, an accurate individuation of SPs, namely the biological component of a given ecosystem that supports human activities is fundamental. SPs are the agents responsible for making the ES-based approach operational. The application of these concepts to the marine environment should be based on an model different to the terrestrial one. In the latter, the basic model envisages a matrix of a human-altered landscape with fragments of original biodiversity; conversely, in the marine environment the model provides fragments where human activities are carried out and the matrix is represented by the original biodiversity. We have identified three main classes of ES provision: in natural, disturbed and human-controlled environments. Economic valuation of marine ESs is an essential condition for making conservation strategies financially sustainable, as it may stimulate the perceived need for investing in protection and exploitation of marine resources. PMID:20933248

  2. 46 CFR 525.3 - Availability of marine terminal operator schedules.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... schedules used by a marine terminal operator, or to which it is a party, shall be maintained in its office(s... incoming calls, (ii) Smart terminal capability for VT-100 terminal or terminal emulation access, and (iii... modems as long as all modems in the bank meet the minimum speed. Smart terminal emulation provides...

  3. 47 CFR 76.616 - Operation near certain aeronautical and marine emergency radio frequencies.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... emergency radio frequencies. 76.616 Section 76.616 Telecommunication FEDERAL COMMUNICATIONS COMMISSION (CONTINUED) BROADCAST RADIO SERVICES MULTICHANNEL VIDEO AND CABLE TELEVISION SERVICE Technical Standards § 76.616 Operation near certain aeronautical and marine emergency radio frequencies. (a) The...

  4. 46 CFR 525.3 - Availability of marine terminal operator schedules.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... 46 Shipping 9 2013-10-01 2013-10-01 false Availability of marine terminal operator schedules. 525.3 Section 525.3 Shipping FEDERAL MARITIME COMMISSION REGULATIONS AFFECTING OCEAN SHIPPING IN FOREIGN...) Availability of terminal schedules—(1) Availability to the Commission. A complete and current set of...

  5. 46 CFR 525.3 - Availability of marine terminal operator schedules.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... 46 Shipping 9 2012-10-01 2012-10-01 false Availability of marine terminal operator schedules. 525.3 Section 525.3 Shipping FEDERAL MARITIME COMMISSION REGULATIONS AFFECTING OCEAN SHIPPING IN FOREIGN...) Availability of terminal schedules—(1) Availability to the Commission. A complete and current set of...

  6. 77 FR 25435 - Taking and Importing Marine Mammals; Naval Explosive Ordnance Disposal School Training Operations...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-04-30

    ... Explosive Ordnance Disposal School Training Operations at Eglin Air Force Base, Florida AGENCY: National... been issued to the U.S. Department of the Air Force, Headquarters 96th Air Base Wing (U.S. Air Force), Eglin Air Force Base (Eglin AFB) to take marine mammals, by Level B harassment, incidental to...

  7. 75 FR 81972 - Taking of Threatened or Endangered Marine Mammals Incidental to Commercial Fishing Operations...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-12-29

    .... stock of Steller sea lions incidental to commercial fishing will have a negligible impact on these... lions, and Eastern U.S. Steller sea lions incidental to commercial fishing will have a negligible impact... Mammals Incidental to Commercial Fishing Operations; Issuance of Permit AGENCY: National Marine...

  8. 47 CFR 76.616 - Operation near certain aeronautical and marine emergency radio frequencies.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... emergency radio frequencies. 76.616 Section 76.616 Telecommunication FEDERAL COMMUNICATIONS COMMISSION (CONTINUED) BROADCAST RADIO SERVICES MULTICHANNEL VIDEO AND CABLE TELEVISION SERVICE Technical Standards § 76.616 Operation near certain aeronautical and marine emergency radio frequencies. (a) The...

  9. 47 CFR 76.616 - Operation near certain aeronautical and marine emergency radio frequencies.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 47 Telecommunication 4 2011-10-01 2011-10-01 false Operation near certain aeronautical and marine emergency radio frequencies. 76.616 Section 76.616 Telecommunication FEDERAL COMMUNICATIONS COMMISSION (CONTINUED) BROADCAST RADIO SERVICES MULTICHANNEL VIDEO AND CABLE TELEVISION SERVICE Technical Standards §...

  10. 47 CFR 76.616 - Operation near certain aeronautical and marine emergency radio frequencies.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... emergency radio frequencies. 76.616 Section 76.616 Telecommunication FEDERAL COMMUNICATIONS COMMISSION (CONTINUED) BROADCAST RADIO SERVICES MULTICHANNEL VIDEO AND CABLE TELEVISION SERVICE Technical Standards § 76.616 Operation near certain aeronautical and marine emergency radio frequencies. (a) The...

  11. Insights from the Sea: Structural Biology of Marine Polyketide Synthases

    PubMed Central

    Akey, David L.; Gehret, Jennifer J.; Khare, Dheeraj; Smith, Janet L.

    2013-01-01

    The world’s oceans are a rich source of natural products with extremely interesting chemistry. Biosynthetic pathways have been worked out for a few, and the story is being enriched with crystal structures of interesting pathway enzymes. By far, the greatest number of structural insights from marine biosynthetic pathways has originated with studies of curacin A, a poster child for interesting marine chemistry with its cyclopropane and thiazoline rings, internal cis double bond, and terminal alkene. Using the curacin A pathway as a model, structural details are now available for a novel loading enzyme with remarkable dual decarboxylase and acetyltransferase activities, an Fe2+/α-ketoglutarate-dependent halogenase that dictates substrate binding order through conformational changes, a decarboxylase that establishes regiochemistry for cyclopropane formation, and a thioesterase with specificity for β-sulfated substrates that lead to terminal alkene offloading. The four curacin A pathway dehydratases reveal an intrinsic flexibility that may accommodate bulky or stiff polyketide intermediates. In the salinosporamide A pathway, active site volume determines the halide specificity of a halogenase that catalyzes for the synthesis of a halogenated building block. Structures of a number of putative polyketide cyclases may help in understanding reaction mechanisms and substrate specificities although their substrates are presently unknown. PMID:22498975

  12. 77 FR 51969 - Taking and Importing Marine Mammals: Taking Marine Mammals Incidental to Navy Operations of...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-08-28

    ... U.S. Navy's operation of SURTASS LFA sonar were effective on August 15, 2012 (77 FR 50290, August 20... covering the USNS IMPECCABLE (T-AGOS 23), under the regulations effective on August 15, 2012 (77 FR 50290... FR 50290, August 20, 2012) and supported by information contained in the Navy's required reports...

  13. 33 CFR 150.506 - When must the operator service inflatable lifesaving appliances and marine evacuation systems?

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... no later than the month and year on its servicing sticker under 46 CFR 160.151-57(m)(3)(ii), except... inflatable lifesaving appliances and marine evacuation systems? 150.506 Section 150.506 Navigation and... operator service inflatable lifesaving appliances and marine evacuation systems? (a) The operator...

  14. 33 CFR 150.506 - When must the operator service inflatable lifesaving appliances and marine evacuation systems?

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... no later than the month and year on its servicing sticker under 46 CFR 160.151-57(m)(3)(ii), except... inflatable lifesaving appliances and marine evacuation systems? 150.506 Section 150.506 Navigation and... operator service inflatable lifesaving appliances and marine evacuation systems? (a) The operator...

  15. Health monitoring of operational structures -- Initial results

    SciTech Connect

    James, G.; Mayes, R.; Carne, T.; Simmermacher, T.; Goodding, J.

    1995-03-01

    Two techniques for damage localization (Structural Translational and Rotational Error Checking -- STRECH and MAtriX COmpletioN -- MAXCON) are described and applied to operational structures. The structures include a Horizontal Axis Wind Turbine (HAWT) blade undergoing a fatigue test and a highway bridge undergoing an induced damage test. STRECH is seen to provide a global damage indicator to assess the global damage state of a structure. STRECH is also seen to provide damage localization for static flexibility shapes or the first mode of simple structures. MAXCON is a robust damage localization tool using the higher order dynamics of a structure. Several options arc available to allow the procedure to be tailored to a variety of structures.

  16. Health monitoring of operational structures: Initial results

    NASA Astrophysics Data System (ADS)

    James, G.; Mayes, R.; Carne, T.; Simmermacher, T.; Goodding, J.

    Two techniques for damage localization (structural translational and rotational error checking - STRECH, and matrix completion - MAXCON) are described and applied to operational structures. The structures include a horizontal axis wind turbine (HAWT) blade undergoing a fatigue test and a highway bridge undergoing an induced damage test. STRECH is seen to provide a global damage indicator to assess the global damage state of a structure. STRECH is also seen to provide damage localization for static flexibility shapes or the first mode of simple structures. MAXCON is a robust damage localization tool using the higher order dynamics of a structure. Several options arc available to allow the procedure to be tailored to a variety of structures.

  17. European Marine Observation and DataNetwork (EMODNET)- physical parameters: A support to marine science and operational oceanography

    NASA Astrophysics Data System (ADS)

    Dahlin, Hans; Gies, Tobias; Giordano, Marco; Gorringe, Patrick; Manzella, Giuseppe; Maudire, Gilbert; Novellino, Antonio; Pagnani, Maureen; Petersson, Sian; Pouliquen, Sylvie; Rickards, Lesley; Schaap, Dick; Tijsse, Peter; van der Horste, Serge

    2013-04-01

    The overall objectives of EMODNET - physical parameters is to provide access to archived and real-time data on physical conditions in Europe's seas and oceans and to determine how well the data meet the needs of users. In particular it will contribute towards the definition of an operational European Marine Observation and Data Network (EMODnet) and contribute to developing the definition of the Global Monitoring for Environment and Security (GMES) marine core service. Access to data and metadata will consider measurements from fixed stations that will cover at least: 1. wave height and period; 2. temperature of the water column; 3. wind speed and direction; 4. salinity of the water column; 5. horizontal velocity of the water column ; 6. light attenuation; 7. sea level. A first running prototype of the portal active from the end of 2011, the final release of the EMODnet PP is due by half June 2012. Then there are 6 months for testing and users' feedback acquisition and management. The project finishes 16th December 2013 after one year of maintenance. Compliance with INSPIRE framework and temporal and geographical data coverage are ensured under the requirements contained in the several Commission Regulations issued from 2008 until 2010. The metadata are based upon the ISO 19115 standard and are compliant with the INSPIRE directive and regulations. This assures also a minimum metadata content in both systems that will facilitate the setting up of a portal that can provide information on data and access to them, depending on the internal data policy of potential contributors. Data coverage: There are three pillars sustaining EMODnet PP: EuroGOOS ROOSs (the EuroGOOS regional Operational Systems), MyOcean and SeaDataNet. MyOcean and EuroGOOS have agreed in EuroGOOS general assemblies (2008-2009-2010) to share their efforts to set up a common infrastructure for real-time data integration for operational oceanography needs extending the global and regional portals set up

  18. Effectiveness of the Combat Operational Stress Control Training Program: Expectations of the U.S. Marine Corps

    ERIC Educational Resources Information Center

    Sipko, Marek M.

    2010-01-01

    This study evaluated the effectiveness of the U.S. Marine Corps combat operational stress preventive training program to determine whether the program meets the training effectiveness criteria of the Marine Corps. This evaluation entailed both qualitative and quantitative inquiries to answer the subject matter research questions. The…

  19. Particle emissions from a marine engine: chemical composition and aromatic emission profiles under various operating conditions.

    PubMed

    Sippula, O; Stengel, B; Sklorz, M; Streibel, T; Rabe, R; Orasche, J; Lintelmann, J; Michalke, B; Abbaszade, G; Radischat, C; Gröger, T; Schnelle-Kreis, J; Harndorf, H; Zimmermann, R

    2014-10-01

    The chemical composition of particulate matter (PM) emissions from a medium-speed four-stroke marine engine, operated on both heavy fuel oil (HFO) and distillate fuel (DF), was studied under various operating conditions. PM emission factors for organic matter, elemental carbon (soot), inorganic species and a variety of organic compounds were determined. In addition, the molecular composition of aromatic organic matter was analyzed using a novel coupling of a thermal-optical carbon analyzer with a resonance-enhanced multiphoton ionization (REMPI) mass spectrometer. The polycyclic aromatic hydrocarbons (PAHs) were predominantly present in an alkylated form, and the composition of the aromatic organic matter in emissions clearly resembled that of fuel. The emissions of species known to be hazardous to health (PAH, Oxy-PAH, N-PAH, transition metals) were significantly higher from HFO than from DF operation, at all engine loads. In contrast, DF usage generated higher elemental carbon emissions than HFO at typical load points (50% and 75%) for marine operation. Thus, according to this study, the sulfur emission regulations that force the usage of low-sulfur distillate fuels will also substantially decrease the emissions of currently unregulated hazardous species. However, the emissions of soot may even increase if the fuel injection system is optimized for HFO operation.

  20. Genetic Structuring across Marine Biogeographic Boundaries in Rocky Shore Invertebrates

    PubMed Central

    Villamor, Adriana; Costantini, Federica; Abbiati, Marco

    2014-01-01

    Biogeography investigates spatial patterns of species distribution. Discontinuities in species distribution are identified as boundaries between biogeographic areas. Do these boundaries affect genetic connectivity? To address this question, a multifactorial hierarchical sampling design, across three of the major marine biogeographic boundaries in the central Mediterranean Sea (Ligurian-Tyrrhenian, Tyrrhenian-Ionian and Ionian-Adriatic) was carried out. Mitochondrial COI sequence polymorphism of seven species of Mediterranean benthic invertebrates was analysed. Two species showed significant genetic structure across the Tyrrhenian-Ionian boundary, as well as two other species across the Ionian Sea, a previously unknown phylogeographic barrier. The hypothesized barrier in the Ligurian-Tyrrhenian cannot be detected in the genetic structure of the investigated species. Connectivity patterns across species at distances up to 800 km apart confirmed that estimates of pelagic larval dispersal were poor predictors of the genetic structure. The detected genetic discontinuities seem more related to the effect of past historical events, though maintained by present day oceanographic processes. Multivariate statistical tools were used to test the consistency of the patterns across species, providing a conceptual framework for across-species barrier locations and strengths. Additional sequences retrieved from public databases supported our findings. Heterogeneity of phylogeographic patterns shown by the 7 investigated species is relevant to the understanding of the genetic diversity, and carry implications for conservation biology. PMID:24983738

  1. Genetic structuring across marine biogeographic boundaries in rocky shore invertebrates.

    PubMed

    Villamor, Adriana; Costantini, Federica; Abbiati, Marco

    2014-01-01

    Biogeography investigates spatial patterns of species distribution. Discontinuities in species distribution are identified as boundaries between biogeographic areas. Do these boundaries affect genetic connectivity? To address this question, a multifactorial hierarchical sampling design, across three of the major marine biogeographic boundaries in the central Mediterranean Sea (Ligurian-Tyrrhenian, Tyrrhenian-Ionian and Ionian-Adriatic) was carried out. Mitochondrial COI sequence polymorphism of seven species of Mediterranean benthic invertebrates was analysed. Two species showed significant genetic structure across the Tyrrhenian-Ionian boundary, as well as two other species across the Ionian Sea, a previously unknown phylogeographic barrier. The hypothesized barrier in the Ligurian-Tyrrhenian cannot be detected in the genetic structure of the investigated species. Connectivity patterns across species at distances up to 800 km apart confirmed that estimates of pelagic larval dispersal were poor predictors of the genetic structure. The detected genetic discontinuities seem more related to the effect of past historical events, though maintained by present day oceanographic processes. Multivariate statistical tools were used to test the consistency of the patterns across species, providing a conceptual framework for across-species barrier locations and strengths. Additional sequences retrieved from public databases supported our findings. Heterogeneity of phylogeographic patterns shown by the 7 investigated species is relevant to the understanding of the genetic diversity, and carry implications for conservation biology. PMID:24983738

  2. Controls on Marine Boundary Layer Mesoscale Structure Observed During the MAGIC Campaign

    NASA Astrophysics Data System (ADS)

    Jensen, M. P.; Ramos, A.; Lewis, E. R.

    2015-12-01

    Marine boundary layer (MBL) clouds play a significant role in the Earth's energy budget by reflecting a large portion of incoming solar radiation with little compensating effect on emitted terrestrial radiation. Despite this importance, large-scale models, used for climate projections, are not able to accurately represent MBL clouds and disagree on the magnitude of their feedback in a warming climate. Observations from the Marine Atmospheric Radiation Measurement (ARM) GPCI Investigation of Clouds (MAGIC) field campaign were used to investigate the relationships between thermodynamic structure and MBL cloud properties. MAGIC was the first ship-based deployment of the Second ARM Mobile facility (AMF2), making measurements from the Horizon Lines Spirit cargo ship as it traveled from Los Angeles, CA to Honolulu, HI and back from October 2012 through September 2013. Our analysis concentrates on observations from regular radiosonde launches from AMF, vertically pointing Ka-band ARM cloud radar observations and coincident scenes from the Geostationary Operational Environmental Satellite (GOES). MBL cloud mesoscale structure is quantified from satellite observations via the effective cloud diameter for a GCM-sized grid-box centered on the Spirit and related to boundary layer thermodynamic structure and cloud boundary statistics. Preliminary results suggest a bimodal relationship between lower tropospheric stability and MBL cloud mesoscale structure.

  3. Latest Sea-Operations in the Macaronesian region with Unmanned Autonomous Marine Gliding Vehicles

    NASA Astrophysics Data System (ADS)

    Barrera, Carlos; Lorenzo, Alvaro; Viera, Josue; Morales, Tania; Vega, Daura; Rueda, Maria Jose; Llinas, Octavio

    2013-04-01

    Current advances on key marine technology fields provide nowadays a broad range of autonomous unmanned platforms addressed for an efficient and cost-effective ocean observation, with a suitable level of success in terms of endurance, reliability and useful gathered information. In this context, a multidisciplinary family of unmanned autonomous vehicles addressed to monitor both coastal and open-ocean areas plays a relevant role. During the last month, some of the newest unmanned gliding vehicle technologies have been tested within the context of the Oceanic Platform of the Canary Islands (PLOCAN) in varied operational scenarios aiming different technical and scientific purposes, all of them joined in direct partnership with the company provider and other R&D institutions in some cases. Among others, representative examples in this way are the missions under the name Challenger One, Vulcano and SB02 through surface and underwater gliding vehicles, performed mostly in the surrounding subtropical waters of the ESTOC site observatory in the Canary Islands archipelago. The main gathered operational and scientific results from these missions are presented in this work as a sign of new ocean observing technologies within the framework of the Macaronesian Marine and Maritime Observation Strategy (R3M) and linked with the current European rules programs and projects in this field. Keywords: autonomous vehicle, gliders, R3M, ocean observatory, monitoring, marine robotics, ESTOC,

  4. Scour around Support Structures of Scaled Model Marine Hydrokinetic Devices

    NASA Astrophysics Data System (ADS)

    Volpe, M. A.; Beninati, M. L.; Krane, M.; Fontaine, A.

    2013-12-01

    Experiments are presented to explore scour due to flows around support structures of marine hydrokinetic (MHK) devices. Three related studies were performed to understand how submergence, scour condition, and the presence of an MHK device impact scour around the support structure (cylinder). The first study focuses on clear-water scour conditions for a cylinder of varying submergence: surface-piercing and fully submerged. The second study centers on three separate scour conditions (clear-water, transitional and live-bed) around the fully submerged cylinder. Lastly, the third study emphasizes the impact of an MHK turbine on scour around the support structure, in live-bed conditions. Small-scale laboratory testing of model devices can be used to help predict the behavior of MHK devices at full-scale. Extensive studies have been performed on single cylinders, modeling bridge piers, though few have focused on fully submerged structures. Many of the devices being used to harness marine hydrokinetic energy are fully submerged in the flow. Additionally, scour hole dimensions and scour rates have not been addressed. Thus, these three studies address the effect of structure blockage/drag, and the ambient scour conditions on scour around the support structure. The experiments were performed in the small-scale testing platform in the hydraulic flume facility (9.8 m long, 1.2 m wide and 0.4 m deep) at Bucknell University. The support structure diameter (D = 2.54 cm) was held constant for all tests. The submerged cylinder (l/D = 5) and sediment size (d50 = 790 microns) were held constant for all three studies. The MHK device (Dturbine = 10.2 cm) is a two-bladed horizontal axis turbine and the rotating shaft is friction-loaded using a metal brush motor. For each study, bed form topology was measured after a three-hour time interval using a traversing two-dimensional bed profiler. During the experiments, scour hole depth measurements at the front face of the support structure

  5. Evolution of Feeding Structures in the Marine Nematode Order Enoplida.

    PubMed

    Smythe, Ashleigh B

    2015-08-01

    Marine nematodes of the order Enoplida may represent the earliest lineage of nematodes and have a variety of fixed and movable feeding structures in their stomas. This study used an 18S ribosomal RNA phylogeny of the orders Enoplida and Triplonchida (subclass Enoplia) to explore the evolution of these feeding structures in light of previous hypotheses based solely on morphology. The Enoplida and Triplonchida were found to be paraphyletic, as several taxa currently classified as Triplonchida, such as Rhabdodemania, were found to be part of the Enoplida clade. The position of Rhabdodemania within Enoplida was unclear, but a close relation to Enoplidae and Thoracostomopsidae was not supported, making it unlikely that its movable odontia are homologous with the mandibles of these families. A member of Anticomidae was well-supported as the base of the clade containing Phanodermatidae, Enoplidae, and Thoracostomopsidae, suggesting that taxa with buccal rods and mandibles evolved from nematodes with unarmed stomas. The Phanodermatidae were shown to be more closely related to the Enoplidae and Thoracostomopsidae than were the Leptosomatidae, suggesting that the buccal rods of the phanoderms (rather than the mandibular ridge/odontia complex of the Leptosomatidae), may be the origin of the mandibles. PMID:25987716

  6. Impact of oceanic submesoscale coherent structures on marine top predators: new tools and challenges

    NASA Astrophysics Data System (ADS)

    Tew-Kai, E.; Sudre, J.; Gremillet, D.; Yahia, H.; Rossi, V.; Hernandez-Garcia, E.; López, C.; Marsac, F.; Weimerskirch, H.; Garçon, V.

    2011-12-01

    In recent years it appears that meso- and submesoscale features (fronts, eddies, filaments) in surface ocean flow have a crucial influence on marine ecosystems. Their dynamics partly control the foraging behaviour and the movements of marine top. One of the challenges in ecology is to define critical habitats and understand the rules of habitat selection. Recently new tools for detection of coherent structures at submesoscale open the way for new studies never investigated before in marine ecology. Through two examples we highlight novel research on the importance of submesoscale structures for the spatial distribution of marine top predators. We studied two seabird populations with contrasting characteristics: Frigatebirds in the Mozambique Channel, and Cape gannets in the Benguela upwelling off southern Africa. Frigatebirds are mainly offshore birds while Cape gannets do not venture beyond the continental shelf. For these two studies, we used products derived from remote sensing data, to describe submesoscale coherent structures (<10km). In the first example, using Finite-Size Lyapunov Exponents (FSLE), we have identified Lagrangian coherent structures (LCSs) present in the surface flow of the Mozambique Channel resulting from an intense mesoscale activity. By comparing seabird satellite positions with LCSs locations, we demonstrate that frigatebirds track precisely these structures in the Mozambique Channel, providing the first evidence that a top predator is able to track these FSLE ridges to locate food patches. Although many questions remain unanswered, this work remains a pioneering on this topic. Despite the interest of FSLE, they are limited to offshore areas due to altimetry products limitation on continental shelves. However, many seabirds operate in coastal areas undergoing stronger anthropogenic pressures, such as Cape gannets off South Africa. The Benguela system is characterized by an upwelling inhabited by numerous fronts and filaments that very

  7. Economic growth and marine biodiversity: influence of human social structure on decline of marine trophic levels.

    PubMed

    Clausen, Rebecca; York, Richard

    2008-04-01

    We assessed the effects of economic growth, urbanization, and human population size on marine biodiversity. We used the mean trophic level (MTL) of marine catch as an indicator of marine biodiversity and conducted cross-national time-series analyses (1960-2003) of 102 nations to investigate human social influences on fish catch and trends in MTL. We constructed path models to examine direct and indirect effects relating to marine catch and MTL. Nations' MTLs declined with increased economic growth, increased urbanization, and increased population size, in part because of associated increased catch. These findings contradict the environmental Kuznets curve hypothesis, which claims that economic modernization will reduce human impact on the environment. To make informed decisions on issues of marine resource management, policy makers, nonprofit entities, and professional societies must recognize the need to include social analyses in overall conservation-research strategies. The challenge is to utilize the socioeconomic and ecological research in the service of a comprehensive marine-conservation movement.

  8. Real time observation system for monitoring environmental impact on marine ecosystems from oil drilling operations.

    PubMed

    Godø, Olav Rune; Klungsøyr, Jarle; Meier, Sonnich; Tenningen, Eirik; Purser, Autun; Thomsen, Laurenz

    2014-07-15

    Environmental awareness and technological advances has spurred development of new monitoring solutions for the petroleum industry. This paper presents experience from a monitoring program off Norway. To maintain operation within the limits of the government regulations Statoil tested a new monitoring concept. Multisensory data were cabled to surface buoys and transmitted to land via wireless communication. The system collected information about distribution of the drilling wastes and the welfare of the corals in relation to threshold values. The project experienced a series of failures, but the backup monitoring provided information to fulfil the requirements of the permit. The experience demonstrated the need for real time monitoring and how such systems enhance understanding of impacts on marine organisms. Also, drilling operations may improve by taking environmental information into account. The paper proposes to standardize and streamline monitoring protocols to maintain comparability during all phases of the operation and between drill sites.

  9. Real time observation system for monitoring environmental impact on marine ecosystems from oil drilling operations.

    PubMed

    Godø, Olav Rune; Klungsøyr, Jarle; Meier, Sonnich; Tenningen, Eirik; Purser, Autun; Thomsen, Laurenz

    2014-07-15

    Environmental awareness and technological advances has spurred development of new monitoring solutions for the petroleum industry. This paper presents experience from a monitoring program off Norway. To maintain operation within the limits of the government regulations Statoil tested a new monitoring concept. Multisensory data were cabled to surface buoys and transmitted to land via wireless communication. The system collected information about distribution of the drilling wastes and the welfare of the corals in relation to threshold values. The project experienced a series of failures, but the backup monitoring provided information to fulfil the requirements of the permit. The experience demonstrated the need for real time monitoring and how such systems enhance understanding of impacts on marine organisms. Also, drilling operations may improve by taking environmental information into account. The paper proposes to standardize and streamline monitoring protocols to maintain comparability during all phases of the operation and between drill sites. PMID:24908516

  10. Locating structural damage using operational deflection shapes

    NASA Astrophysics Data System (ADS)

    Pai, Perngjin F.; Jin, Si

    2000-06-01

    Presented here is a newly developed Boundary Effect Detection (BED) method for pinpointing locations of small damage to structures using Operational Deflection Shapes (ODSs) measured by a scanning laser vibrometer. The BED method requires no model or historical data for locating structural damage. It works by decomposing a measured ODS into central solutions and boundary-layer solutions by using a sliding-window least- squares curve-fitting technique. For high-order ODSs without damage, boundary-layer solutions are non-zero only at structural boundaries. For a damaged structure, because damage introduces new boundaries, its boundary-layer solutions are non-zero at damage locations as well as its original boundaries. At a damage location, the boundary-layer solution of slope changes sign, and the boundary-layer solution of displacement peaks up or dimples down. The theoretical background is shown in detail. Experiments are performed on several different structures with different damages, including surface slots, edge slots, surface holes, internal holes, and fatigue cracks. Experimental results show that this damage detection method is more sensitive and reliable for locating small damage than other dynamics-based methods using curvatures or strain energies.

  11. Rescaling the trophic structure of marine food webs.

    PubMed

    Hussey, Nigel E; Macneil, M Aaron; McMeans, Bailey C; Olin, Jill A; Dudley, Sheldon F J; Cliff, Geremy; Wintner, Sabine P; Fennessy, Sean T; Fisk, Aaron T

    2014-02-01

    Measures of trophic position (TP) are critical for understanding food web interactions and human-mediated ecosystem disturbance. Nitrogen stable isotopes (δ(15) N) provide a powerful tool to estimate TP but are limited by a pragmatic assumption that isotope discrimination is constant (change in δ(15) N between predator and prey, Δ(15) N = 3.4‰), resulting in an additive framework that omits known Δ(15) N variation. Through meta-analysis, we determine narrowing discrimination from an empirical linear relationship between experimental Δ(15) N and δ(15) N values of prey consumed. The resulting scaled Δ(15) N framework estimated reliable TPs of zooplanktivores to tertiary piscivores congruent with known feeding relationships that radically alters the conventional structure of marine food webs. Apex predator TP estimates were markedly higher than currently assumed by whole-ecosystem models, indicating perceived food webs have been truncated and species-interactions over simplified. The scaled Δ(15) N framework will greatly improve the accuracy of trophic estimates widely used in ecosystem-based management.

  12. Rescaling the trophic structure of marine food webs

    PubMed Central

    Hussey, Nigel E; MacNeil, M Aaron; McMeans, Bailey C; Olin, Jill A; Dudley, Sheldon FJ; Cliff, Geremy; Wintner, Sabine P; Fennessy, Sean T; Fisk, Aaron T

    2014-01-01

    Measures of trophic position (TP) are critical for understanding food web interactions and human-mediated ecosystem disturbance. Nitrogen stable isotopes (δ15N) provide a powerful tool to estimate TP but are limited by a pragmatic assumption that isotope discrimination is constant (change in δ15N between predator and prey, Δ15N = 3.4‰), resulting in an additive framework that omits known Δ15N variation. Through meta-analysis, we determine narrowing discrimination from an empirical linear relationship between experimental Δ15N and δ15N values of prey consumed. The resulting scaled Δ15N framework estimated reliable TPs of zooplanktivores to tertiary piscivores congruent with known feeding relationships that radically alters the conventional structure of marine food webs. Apex predator TP estimates were markedly higher than currently assumed by whole-ecosystem models, indicating perceived food webs have been truncated and species-interactions over simplified. The scaled Δ15N framework will greatly improve the accuracy of trophic estimates widely used in ecosystem-based management. PMID:24308860

  13. Design, operations planning and experience from the marine operations for the Europipe jacket with bucket foundations

    SciTech Connect

    Rusaas, P.; Baerheim, M. [Statoil A Giske, S.R.; Barrett, G.; Christiansen, P.E.

    1995-12-01

    The Europipe 16/11-E riser platform was successfully installed in the Norwegian part of the North Sea last summer. Rather than having the traditional piled foundations, the platform has bucket foundations consisting of one inverted 12m diameter bucket in each of the four Jacket corners. After set down of the Jacket on the seabed and self weight penetration, the Jacket legs were waterfilled and the buckets thus gained further penetration. Finally suction within the buckets penetrated them to target penetration. This paper describes the preparatory work and the installation of the structure, discusses the main problem areas and experiences gained from the installation.

  14. Temporal changes in population structure of a marine planktonic diatom.

    PubMed

    Tesson, Sylvie V M; Montresor, Marina; Procaccini, Gabriele; Kooistra, Wiebe H C F

    2014-01-01

    A prevailing question in phytoplankton research addresses changes of genetic diversity in the face of huge population sizes and apparently unlimited dispersal capabilities. We investigated population genetic structure of the pennate planktonic marine diatom Pseudo-nitzschia multistriata at the LTER station MareChiara in the Gulf of Naples (Italy) over four consecutive years and explored possible changes over seasons and from year to year. A total of 525 strains were genotyped using seven microsatellite markers, for a genotypic diversity of 75.05%, comparable to that found in other Pseudo-nitzschia species. Evidence from Bayesian clustering analysis (BA) identified two genetically distinct clusters, here interpreted as populations, and several strains that could not be assigned with ≥ 90% probability to either population, here interpreted as putative hybrids. Principal Component Analysis (PCA) recovered these two clusters in distinct clouds with most of the putative hybrids located in-between. Relative proportions of the two populations and the putative hybrids remained similar within years, but changed radically between 2008 and 2009 and between 2010 and 2011, when the 2008-population apparently became the dominant one again. Strains from the two populations are inter-fertile, and so is their offspring. Inclusion of genotypes of parental strains and their offspring shows that the majority of the latter could not be assigned to any of the two parental populations. Therefore, field strains classified by BA as the putative hybrids could be biological hybrids. We hypothesize that P. multistriata population dynamics in the Gulf of Naples follows a meta-population-like model, including establishment of populations by cell inocula at the beginning of each growth season and remixing and dispersal governed by moving and mildly turbulent water masses.

  15. Temporal Changes in Population Structure of a Marine Planktonic Diatom

    PubMed Central

    Tesson, Sylvie V. M.; Montresor, Marina; Procaccini, Gabriele; Kooistra, Wiebe H. C. F.

    2014-01-01

    A prevailing question in phytoplankton research addresses changes of genetic diversity in the face of huge population sizes and apparently unlimited dispersal capabilities. We investigated population genetic structure of the pennate planktonic marine diatom Pseudo-nitzschia multistriata at the LTER station MareChiara in the Gulf of Naples (Italy) over four consecutive years and explored possible changes over seasons and from year to year. A total of 525 strains were genotyped using seven microsatellite markers, for a genotypic diversity of 75.05%, comparable to that found in other Pseudo-nitzschia species. Evidence from Bayesian clustering analysis (BA) identified two genetically distinct clusters, here interpreted as populations, and several strains that could not be assigned with ≥90% probability to either population, here interpreted as putative hybrids. Principal Component Analysis (PCA) recovered these two clusters in distinct clouds with most of the putative hybrids located in-between. Relative proportions of the two populations and the putative hybrids remained similar within years, but changed radically between 2008 and 2009 and between 2010 and 2011, when the 2008-population apparently became the dominant one again. Strains from the two populations are inter-fertile, and so is their offspring. Inclusion of genotypes of parental strains and their offspring shows that the majority of the latter could not be assigned to any of the two parental populations. Therefore, field strains classified by BA as the putative hybrids could be biological hybrids. We hypothesize that P. multistriata population dynamics in the Gulf of Naples follows a meta-population-like model, including establishment of populations by cell inocula at the beginning of each growth season and remixing and dispersal governed by moving and mildly turbulent water masses. PMID:25506926

  16. Characterization of particles from a marine engine operating at low loads

    NASA Astrophysics Data System (ADS)

    Anderson, Maria; Salo, Kent; Hallquist, Åsa M.; Fridell, Erik

    2015-01-01

    Particle emissions from a marine diesel engine operating at low loads with four different fuels were characterized with respect to particle number (PN) and particle mass (PM), size distribution, volatility and chemical composition. The four different fuels used were Swedish Environmental class 1 (MK1) and class 3 diesel (MK3), heavy fuel oil (HFO, 0.12 wt% S) and marine diesel oil (MDO, 0.52 wt% S). The measurements were performed for a marine diesel engine in a test-bed engine lab and the particle emissions were measured with an Engine Exhaust Particle Sizer and a Dust Monitor, giving the number concentrations in the size range of 5.6-560 nm and 300 nm to 20 μm, respectively. To quantify the amount of solid particles a thermodenuder was used. Additionally, filter samples were taken for gravimetric, black carbon (BC) and elemental analysis. The particle emissions showed a bimodal size distribution by number and the number concentrations were dominated by nanoparticles (diameter (Dp) < 50 nm). The nanoparticles measured were both primary and secondary particles, depending on fuel and engine load, while the particles with Dp > 50 nm generally were solid primary particles. Combustion of HFO resulted in the highest PN and PM concentrations. Emission factors (EFs) for PM and PN for both the total particle emissions and the fraction of primary, solid particles are presented for different fuels and loads. EFs for nitrogen oxides (NOx), BC and some elements (Ca, Fe, V, Ni, Zn) are presented as well. This study contributes to understanding particle emissions from potential future fuels as well as emissions in ports and coastal areas where lower engine loads are common.

  17. Aircraft measurements of the mean and turbulent structure of marine stratocumulus clouds during FIRE

    NASA Technical Reports Server (NTRS)

    Albrecht, Bruce A.; Kloesel, Kevin A.; Moyer, Kerry A.; Nucciarone, Jefferey J.; Young, George

    1990-01-01

    The mean and turbulent structure of marine stratocumulus clouds is defined from data that were collected from 10 flights made with the National Center for Atmospheric Research (NCAR) Electra during the First ISCCP Regional Experiment (FIRE). The number of cases sampled is sufficiently large that researchers can compare the boundary layer structure obtained (1) for solid and broken cloud conditions, (2) for light and strong surface wind conditions, (3) for different sea-surface temperatures, and (4) on day and night flights. Researchers will describe the cloud and synoptic conditions present at the time of the Electra flights and show how those flights were coordinated with the operations of other aircraft and with satellite overpasses. Mean thermodynamic and wind profiles and the heat, moisture, and momentum fluxes obtained from data collected during these flights will be compared. Variations in the cloud-top structure will be quantified using LIDAR data collected during several of the Electra flights. The spatial structure of cloud-top height and the cloud-base height will be compared with the turbulent structure in the boundary layer as defined by spectra and cospectra of the wind, temperature, and moisture.

  18. Applications of satellite and marine geodesy to operations in the ocean environment

    NASA Technical Reports Server (NTRS)

    Fubara, D. M.; Mourad, A. G.

    1975-01-01

    The requirements for marine and satellite geodesy technology are assessed with emphasis on the development of marine geodesy. Various programs and missions for identification of the satellite geodesy technology applicable to marine geodesy are analyzed along with national and international marine programs to identify the roles of satellite/marine geodesy techniques for meeting the objectives of the programs and other objectives of national interest effectively. The case for marine geodesy is developed based on the extraction of requirements documented by authoritative technical industrial people, professional geodesists, government agency personnel, and applicable technology reports.

  19. Survey of marine natural product structure revisions: a synergy of spectroscopy and chemical synthesis.

    PubMed

    Suyama, Takashi L; Gerwick, William H; McPhail, Kerry L

    2011-11-15

    The structural assignment of new natural product molecules supports research in a multitude of disciplines that may lead to new therapeutic agents and or new understanding of disease biology. However, reports of numerous structural revisions, even of recently elucidated natural products, inspired the present survey of techniques used in structural misassignments and subsequent revisions in the context of constitutional or configurational errors. Given the comparatively recent development of marine natural products chemistry, coincident with modern spectroscopy, it is of interest to consider the relative roles of spectroscopy and chemical synthesis in the structure elucidation and revision of those marine natural products that were initially misassigned. Thus, a tabulated review of all marine natural product structural revisions from 2005 to 2010 is organized according to structural motif revised. Misassignments of constitution are more frequent than perhaps anticipated by reliance on HMBC and other advanced NMR experiments, especially when considering the full complement of all natural products. However, these techniques also feature prominently in structural revisions, specifically of marine natural products. Nevertheless, as is the case for revision of relative and absolute configuration, total synthesis is a proven partner for marine, as well as terrestrial, natural products structure elucidation. It also becomes apparent that considerable 'detective work' remains in structure elucidation, in spite of the spectacular advances in spectroscopic techniques.

  20. RANS simulation of cavitation and hull pressure fluctuation for marine propeller operating behind-hull condition

    NASA Astrophysics Data System (ADS)

    Paik, Kwang-Jun; Park, Hyung-Gil; Seo, Jongsoo

    2013-12-01

    Simulations of cavitation flow and hull pressure fluctuation for a marine propeller operating behind a hull using the unsteady Reynolds-Averaged Navier-Stokes equations (RANS) are presented. A full hull body submerged under the free surface is modeled in the computational domain to simulate directly the wake field of the ship at the propeller plane. Simulations are performed in design and ballast draught conditions to study the effect of cavitation number. And two propellers with slightly different geometry are simulated to validate the detectability of the numerical simulation. All simulations are performed using a commercial CFD software FLUENT. Cavitation patterns of the simulations show good agreement with the experimental results carried out in Samsung CAvitation Tunnel (SCAT). The simulation results for the hull pressure fluctuation induced by a propeller are also compared with the experimental results showing good agreement in the tendency and amplitude, especially, for the first blade frequency.

  1. Sediment Contaminants and Infauna Associated with Recreational Boating Structures in a Multi-Use Marine Park.

    PubMed

    Sim, Vivian X Y; Dafforn, Katherine A; Simpson, Stuart L; Kelaher, Brendan P; Johnston, Emma L

    2015-01-01

    Multi-use marine parks achieve conservation through spatial management of activities. Zoning of marine parks in New South Wales, Australia, includes high conservation areas and special purpose zones (SPZ) where maritime activities are concentrated. Although such measures geographically constrain anthropogenic impacts, we have limited understanding of potential ecological effects. We assessed sediment communities and contaminants adjacent to boating infrastructure (boat ramps, jetties and a marina) in a SPZ from the Clyde Estuary in Batemans Marine Park. Metal concentrations and fines content were elevated at boating structures compared to reference sites. Species richness was higher at sites with boating structures, where capitellid polychaetes and nematodes dominated the communities. Changes associated with boating structures were localised and did not extend beyond breakwalls or to reference sites outside the SPZ. The study highlights the benefits of appropriate zoning in a multi-use marine park and the potential to minimise stress on pristine areas through the application of spatial management.

  2. Sediment Contaminants and Infauna Associated with Recreational Boating Structures in a Multi-Use Marine Park

    PubMed Central

    Sim, Vivian X. Y.; Dafforn, Katherine A.; Simpson, Stuart L.; Kelaher, Brendan P.; Johnston, Emma L.

    2015-01-01

    Multi-use marine parks achieve conservation through spatial management of activities. Zoning of marine parks in New South Wales, Australia, includes high conservation areas and special purpose zones (SPZ) where maritime activities are concentrated. Although such measures geographically constrain anthropogenic impacts, we have limited understanding of potential ecological effects. We assessed sediment communities and contaminants adjacent to boating infrastructure (boat ramps, jetties and a marina) in a SPZ from the Clyde Estuary in Batemans Marine Park. Metal concentrations and fines content were elevated at boating structures compared to reference sites. Species richness was higher at sites with boating structures, where capitellid polychaetes and nematodes dominated the communities. Changes associated with boating structures were localised and did not extend beyond breakwalls or to reference sites outside the SPZ. The study highlights the benefits of appropriate zoning in a multi-use marine park and the potential to minimise stress on pristine areas through the application of spatial management. PMID:26086427

  3. Molecular structure of endotoxins from Gram-negative marine bacteria: an update.

    PubMed

    Leone, Serena; Silipo, Alba; L Nazarenko, Evgeny; Lanzetta, Rosa; Parrilli, Michelangelo; Molinaro, Antonio

    2007-01-01

    Marine bacteria are microrganisms that have adapted, through millions of years, to survival in environments often characterized by one or more extreme physical or chemical parameters, namely pressure, temperature and salinity. The main interest in the research on marine bacteria is due to their ability to produce several biologically active molecules, such as antibiotics, toxins and antitoxins, antitumor and antimicrobial agents. Nonetheless, lipopolysaccharides (LPSs), or their portions, from Gram-negative marine bacteria, have often shown low virulence, and represent potential candidates in the development of drugs to prevent septic shock. Besides, the molecular architecture of such molecules is related to the possibility of thriving in marine habitats, shielding the cell from the disrupting action of natural stress factors. Over the last few years, the depiction of a variety of structures of lipids A, core oligosaccharides and O-specific polysaccharides from LPSs of marine microrganisms has been given. In particular, here we will examine the most recently encountered structures for bacteria belonging to the genera Shewanella, Pseudoalteromonas and Alteromonas, of the gamma-Proteobacteria phylum, and to the genera Flavobacterium, Cellulophaga, Arenibacter and Chryseobacterium, of the Cytophaga-Flavobacterium-Bacteroides phylum. Particular attention will be paid to the chemical features expressed by these structures (characteristic monosaccharides, non-glycidic appendages, phosphate groups), to the typifying traits of LPSs from marine bacteria and to the possible correlation existing between such features and the adaptation, over years, of bacteria to marine environments. PMID:18463721

  4. Molecular Structure of Endotoxins from Gram-negative Marine Bacteria: An Update

    PubMed Central

    Leone, Serena; Silipo, Alba; L.Nazarenko, Evgeny; Lanzetta, Rosa; Parrilli, Michelangelo; Molinaro, Antonio

    2007-01-01

    Marine bacteria are microrganisms that have adapted, through millions of years, to survival in environments often characterized by one or more extreme physical or chemical parameters, namely pressure, temperature and salinity. The main interest in the research on marine bacteria is due to their ability to produce several biologically active molecules, such as antibiotics, toxins and antitoxins, antitumor and antimicrobial agents. Nonetheless, lipopolysaccharides (LPSs), or their portions, from Gram-negative marine bacteria, have often shown low virulence, and represent potential candidates in the development of drugs to prevent septic shock. Besides, the molecular architecture of such molecules is related to the possibility of thriving in marine habitats, shielding the cell from the disrupting action of natural stress factors. Over the last few years, the depiction of a variety of structures of lipids A, core oligosaccharides and O-specific polysaccharides from LPSs of marine microrganisms has been given. In particular, here we will examine the most recently encountered structures for bacteria belonging to the genera Shewanella, Pseudoalteromonas and Alteromonas, of the γ-Proteobacteria phylum, and to the genera Flavobacterium, Cellulophaga, Arenibacter and Chryseobacterium, of the Cytophaga-Flavobacterium-Bacteroides phylum. Particular attention will be paid to the chemical features expressed by these structures (characteristic monosaccharides, non-glycidic appendages, phosphate groups), to the typifying traits of LPSs from marine bacteria and to the possible correlation existing between such features and the adaptation, over years, of bacteria to marine environments. PMID:18463721

  5. Impacts of marine renewable energy scheme operation on the eutrophication potential of the Severn Estuary, UK

    NASA Astrophysics Data System (ADS)

    Kadiri, Margaret; Kay, David; Ahmadian, Reza; Bockelmann-Evans, Bettina; Falconer, Roger; Bray, Michaela

    2013-04-01

    In recent years there has being growing global interest in the generation of electricity from renewable resources. Amongst these, marine energy resource is now being considered to form a significant part of the energy mix, with plans for the implementation of several marine renewable energy schemes such as barrages and tidal stream turbines around the UK in the near future. Although marine energy presents a great potential for future electricity generation, there are major concerns over its potential impacts, particularly barrages, on the hydro-environment. Previous studies have shown that a barrage could significantly alter the hydrodynamic regime and tidal flow characteristics of an estuary, with changes to sediment transport (Kadiri et al., 2012). However, changes to nutrients have been overlooked to date. Hence, considerable uncertainty remains as to how a barrage would affect the trophic status of an estuary. This is particularly important because eutrophication can lead to algal toxin production and increased mortality of aquatic invertebrates and fish populations. Therefore, this study examines the impacts of the two different modes of operation of a barrage (i.e. ebb generation and flood-ebb generation) on the eutrophication potential of the Severn Estuary using a simplified model developed by the UK's Comprehensive Studies Task Team (CSTT). The model uses a set of equations and site-specific input data to predict equilibrium dissolved nutrient concentrations, phytoplankton biomass, light-controlled phytoplankton growth rate and primary production which are compared against CSTT set standards for assessing the eutrophic status of estuaries and coastal waters. The estuary volume and tidal flushing time under the two operating modes were estimated using a hydrodynamic model and field surveys were conducted to obtain dissolved nitrate and phosphate concentrations which served as input data. The predicted equilibrium dissolved nitrate and phosphate

  6. The Surface of Venus is Saturated With Ancient Impact Structures, and its Plains are Marine Sediments

    NASA Astrophysics Data System (ADS)

    Hamilton, W. B.

    2009-05-01

    Conventional interpretations of Venus are forced to fit dubious pre-Magellan conjectures that the planet is as active internally as Earth and preserves no ancient surface features. Plate tectonics obviously does not operate, so it is commonly assumed that the surface must record other endogenic processes, mostly unique to Venus. Imaginative systems of hundreds of tiny to huge rising and sinking plumes and diapirs are invoked. That much of the surface in fact is saturated with overlapping large circular depressions with the morphology of impact structures is obscured by postulating plume origins for selected structures and disregarding the rest. Typical structures are rimmed circular depressions, often multiring, with lobate debris aprons; central peaks are common. Marine-sedimentation features are overlooked because dogma deems the plains to be basalt flows despite their lack of source volcanoes and fissures. The unearthly close correlation between geoid and topography at long to moderate wavelengths requires, in conventional terms, dynamic maintenance of topography by up and down plumes of long-sustained precise shapes and buoyancy. A venusian upper mantle much stronger than that of Earth, because it is cooler or poorer in volatiles, is not considered. (The unearthly large so-called volcanoes and tessera plateaus often are related to rimmed circular depressions and likely are products of impact fluidization and melting.) Plains-saturating impact structures (mostly more obvious in altimetry than backscatter) with diameters of hundreds of km are superimposed as cookie-cutter bites, are variably smoothed and smeared by apparent submarine impact and erosion, and are differentially buried by sediments compacted into them. Marine- sedimentation evidence includes this compaction; long sinuous channels and distributaries with turbidite- channel characteristics and turbidite-like lobate flows (Jones and Pickering, JGSL 2003); radar-smooth surfaces and laminated aspect in

  7. The influence of the types of marine fuel over the Energy Efficiency Operational Index

    NASA Astrophysics Data System (ADS)

    Acomi, Nicoleta; Acomi, Ovidiu

    2014-05-01

    One of the main concerns of our society is certainly the environment protection. The international efforts for maintaining the environment clean are various and this paper refers to the efforts in the maritime transport field. Marine pollution consists of the water pollution and also the air pollution. Regardless of the delay in recognizing the later type of pollution, it rapidly gains many organizations to argue on it. The first step was including a dedicated annex (Annex VI) in the International Convention for the Prevention of Pollution from Ships, in 1997, which seeks to minimize the airborne emissions from ships. In order to control and minimize the air pollution, the International Maritime Organization has also developed a series of measures for monitoring the emissions. These measures are grouped in three main directions: technical, operational and management related. The subject of our study is the concept of Energy Efficiency Operational Index (EEOI), developed to provide ship-owners with assistance in the process of establishing the emissions from ships in operation, and to suggest the methods for achieving their reduction. As a monitoring tool, EEOI represents the mass of CO2 emitted per unit of transport work. The actual CO2 emission from combustion of fuel on board a ship during each voyage is calculated by multiplying total fuel consumption for each type of fuel (e.g. diesel oil, gas oil, light fuel oil, heavy fuel oil, liquefied petroleum gas, liquefied natural gas) with the carbon to CO2 conversion factor for the fuel in question. The performed transport work is calculated by multiplying mass of cargo (tonnes, number of TEU/cars, or number of passengers) with the distance in nautical miles corresponding to the transport work done. Using the software developed by the author it will be emphasized the variation of the EEOI value for one vessel using different types of fuel for the voyage's legs (distance to discharge port, distance to loading port, the

  8. Operational Marine Data Acquisition and Delivery Powered by Web and Geospatial Standards

    NASA Astrophysics Data System (ADS)

    Thomas, R.; Buck, J. J. H.

    2015-12-01

    As novel sensor types and new platforms are deployed to monitor the global oceans, the volumes of scientific and environmental data collected in the marine context are rapidly growing. In order to use these data in both the traditional operational modes and in innovative "Big Data" applications the data must be readily understood by software agents. One approach to achieving this is the application of both World Wide Web and Open Geospatial Consortium standards: namely Linked Data1 and Sensor Web Enablement2 (SWE). The British Oceanographic Data Centre (BODC) is adopting this strategy in a number of European Commission funded projects (NETMAR; SenseOCEAN; Ocean Data Interoperability Platform - ODIP; and AtlantOS) to combine its existing data archiving architecture with SWE components (such as Sensor Observation Services) and a Linked Data interface. These will evolve the data management and data transfer from a process that requires significant manual intervention to an automated operational process enabling the rapid, standards-based, ingestion and delivery of data. This poster will show the current capabilities of BODC and the status of on-going implementation of this strategy. References1. World Wide Web Consortium. (2013). Linked Data. Available:http://www.w3.org/standards/semanticweb/data. Last accessed 7th April 20152. Open Geospatial Consortium. (2014). Sensor Web Enablement (SWE). Available:http://www.opengeospatial.org/ogc/markets-technologies/swe. Last accessed 8th October 2014

  9. The structure of ferricytochrome c552 from the psychrophilic marine bacterium Colwellia psychrerythraea 34H

    PubMed Central

    Harvilla, Paul B.; Wolcott, Holly N.

    2014-01-01

    Approximately 40% of all proteins are metalloproteins, and approximately 80% of Earth’s ecosystems are at temperatures ≤ 5 °C, including 90% of the global ocean. Thus, an essential aspect of marine metallobiochemistry is an understanding of the structure, dynamics, and mechanisms of cold adaptation of metalloproteins from marine microorganisms. Here, the molecular structure of the electron-transfer protein cytochrome c552 from the psychrophilic marine bacterium Colwellia psychrerythraea 34H has been determined by X-ray crystallography (PDB: 4O1W). The structure is highly superimposable with that of the homologous cytochrome from the mesophile Marinobacter hydrocarbonoclasticus. Based on structural analysis and comparison of psychrophilic, psychrotolerant, and mesophilic sequences, a methionine-based ligand-substitution mechanism for psychrophilic protein stabilization is proposed. PMID:24727932

  10. Marine terraces; datum planes for study of structural deformation

    USGS Publications Warehouse

    Huber, N.K.

    1975-01-01

    Along the earthquake-prone coastal area of north-central California, geologists are searching for criteria to establish the nature, extent, and rate of crustal movement or deformation that may be related to activity along known or postulated faults. This search has led to a study of marine terraces along the coast between San Francisco and Santa Cruz in the area that is transected by the Seal Cove-San Gregorio-Palo Colorado fault, a branch of the San Andreas fault system. 

  11. 30 CFR 780.12 - Operation plan: Existing structures.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... structure was begun and completed; and (4) A showing, including relevant monitoring data or other evidence... 30 Mineral Resources 3 2011-07-01 2011-07-01 false Operation plan: Existing structures. 780.12... PLAN § 780.12 Operation plan: Existing structures. (a) Each application shall contain a description...

  12. 30 CFR 784.12 - Operation plan: Existing structures.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... structure was begun and completed; and (4) A showing, including relevant monitoring data or other evidence... 30 Mineral Resources 3 2010-07-01 2010-07-01 false Operation plan: Existing structures. 784.12... PLAN § 784.12 Operation plan: Existing structures. (a) Each application shall contain a description...

  13. 30 CFR 784.12 - Operation plan: Existing structures.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... structure was begun and completed; and (4) A showing, including relevant monitoring data or other evidence... 30 Mineral Resources 3 2011-07-01 2011-07-01 false Operation plan: Existing structures. 784.12... PLAN § 784.12 Operation plan: Existing structures. (a) Each application shall contain a description...

  14. 30 CFR 784.12 - Operation plan: Existing structures.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... structure was begun and completed; and (4) A showing, including relevant monitoring data or other evidence... 30 Mineral Resources 3 2012-07-01 2012-07-01 false Operation plan: Existing structures. 784.12... PLAN § 784.12 Operation plan: Existing structures. (a) Each application shall contain a description...

  15. 30 CFR 784.12 - Operation plan: Existing structures.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... structure was begun and completed; and (4) A showing, including relevant monitoring data or other evidence... 30 Mineral Resources 3 2014-07-01 2014-07-01 false Operation plan: Existing structures. 784.12... PLAN § 784.12 Operation plan: Existing structures. (a) Each application shall contain a description...

  16. 30 CFR 780.12 - Operation plan: Existing structures.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... structure was begun and completed; and (4) A showing, including relevant monitoring data or other evidence... 30 Mineral Resources 3 2012-07-01 2012-07-01 false Operation plan: Existing structures. 780.12... PLAN § 780.12 Operation plan: Existing structures. (a) Each application shall contain a description...

  17. 30 CFR 780.12 - Operation plan: Existing structures.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... structure was begun and completed; and (4) A showing, including relevant monitoring data or other evidence... 30 Mineral Resources 3 2014-07-01 2014-07-01 false Operation plan: Existing structures. 780.12... PLAN § 780.12 Operation plan: Existing structures. (a) Each application shall contain a description...

  18. 30 CFR 780.12 - Operation plan: Existing structures.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... structure was begun and completed; and (4) A showing, including relevant monitoring data or other evidence... 30 Mineral Resources 3 2010-07-01 2010-07-01 false Operation plan: Existing structures. 780.12... PLAN § 780.12 Operation plan: Existing structures. (a) Each application shall contain a description...

  19. Venus - Vertical structure of stratospheric hazes from Mariner 10 pictures

    NASA Technical Reports Server (NTRS)

    Oleary, B.

    1975-01-01

    An 'optical barometer' technique for determining the altitudes of haze in the stratosphere of Venus is presented wherein the Rayleigh-scattering component is derived by comparing orange and UV brightness profiles for nearby Mariner 10 television-picture pairs. The derived scale height for CO2 gas is 4.2 km, corresponding to a temperature of 200 K, in good agreement with radio occultation data. The optical barometer yields a pressure of 4 mb for the level at which the slant-path optical depth at the limb is unity. This level corresponds to a distance from the center of Venus equal to 6131 km, which is accurate to within 1 km provided that there is no appreciable contribution to the brightness by Rayleigh-scattering aerosols which mimic CO2 gas. It is possible that the limb haze layering observed between 6130 and 6140 km could be correlated with temperature inversions detected by the Mariner 5 radio-occultation experiment. A model is proposed wherein the concentration of particles increases rapidly with an effective scale height of about 2 km as one descends about 10 km from the limb haze to the main polarization cloud deck.

  20. Structure and Growth of the Marine Boundary Layer

    NASA Technical Reports Server (NTRS)

    Mccumber, M.

    1984-01-01

    LANDSAT visible imagery and a one-dimensional Lagrangian boundary layer model were used to hypothesize the nature and the development of the marine boundary layer during a winter episode of strong seaward cold air advection. Over-water heating and moistening of the cold, dry continental air is estimable from linear relations involving horizontal gradients of the near-surface air temperature and humidity. A line of enhanced convection paralleling the Atlantic U.S. coast from south of New York Bay to the vicinity of Virginia Beach, VA was attributed to stronger convergence at low levels. This feature was characterized as a mesoscale front. With the assistance of a three-dimensional mesoscale boundary layer model, initialized with data obtained from the MASEX, the marine boundary layer can be mapped over the entire Atlantic coastal domain and the evolution of the boundary layer can be studied as a function of different characteristics of important surface level forcings. The effects on boundary layer growth due to the magnitude and pattern of sea surface temperature, to the shape of the coastline, and to atmospheric conditions, such as the orientation of the prevailing wind are examined.

  1. Gram-Negative Marine Bacteria: Structural Features of Lipopolysaccharides and Their Relevance for Economically Important Diseases

    PubMed Central

    Anwar, Muhammad Ayaz; Choi, Sangdun

    2014-01-01

    Gram-negative marine bacteria can thrive in harsh oceanic conditions, partly because of the structural diversity of the cell wall and its components, particularly lipopolysaccharide (LPS). LPS is composed of three main parts, an O-antigen, lipid A, and a core region, all of which display immense structural variations among different bacterial species. These components not only provide cell integrity but also elicit an immune response in the host, which ranges from other marine organisms to humans. Toll-like receptor 4 and its homologs are the dedicated receptors that detect LPS and trigger the immune system to respond, often causing a wide variety of inflammatory diseases and even death. This review describes the structural organization of selected LPSes and their association with economically important diseases in marine organisms. In addition, the potential therapeutic use of LPS as an immune adjuvant in different diseases is highlighted. PMID:24796306

  2. Oxygen limitations on marine animal distributions and the collapse of epibenthic community structure during shoaling hypoxia.

    PubMed

    Chu, Jackson W F; Tunnicliffe, Verena

    2015-08-01

    Deoxygenation in the global ocean is predicted to induce ecosystem-wide changes. Analysis of multidecadal oxygen time-series projects the northeast Pacific to be a current and future hot spot of oxygen loss. However, the response of marine communities to deoxygenation is unresolved due to the lack of applicable data on component species. We repeated the same benthic transect (n = 10, between 45 and 190 m depths) over 8 years in a seasonally hypoxic fjord using remotely operated vehicles equipped with oxygen sensors to establish the lower oxygen levels at which 26 common epibenthic species can occur in the wild. By timing our surveys to shoaling hypoxia events, we show that fish and crustacean populations persist even in severe hypoxia (<0.5 mL L(-1) ) with no mortality effects but that migration of mobile species occurs. Consequently, the immediate response to hypoxia expansion is the collapse of community structure; normally partitioned distributions of resident species coalesced and localized densities increased. After oxygen renewal and formation of steep oxygen gradients, former ranges re-established. High frequency data from the nearby VENUS subsea observatory show the average oxygen level at our site declined by ~0.05 mL L(-1) year(-1) over the period of our study. The increased annual duration of the hypoxic (<1.4 mL L(-1) ) and severely hypoxic periods appears to reflect the oxygen dynamics demonstrated in offshore source waters and the adjacent Strait of Georgia. Should the current trajectory of oxygen loss continue, community homogenization and reduced suitable habitat may become the dominant state of epibenthic systems in the northeast Pacific. In situ oxygen occurrences were not congruent with lethal and sublethal hypoxia thresholds calculated across the literature for major taxonomic groups indicating that research biases toward laboratory studies on Atlantic species are not globally applicable. Region-specific hypoxia thresholds are necessary to

  3. 75 FR 65278 - Pamlico Sound and Adjacent Waters, NC; Danger Zones for Marine Corps Operations

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-10-22

    ... of Engineers, Department of the Army 33 CFR Part 334 Pamlico Sound and Adjacent Waters, NC; Danger... its regulations to establish one new danger zone in Pamlico Sound near Marine Corps Air Station Cherry Point, North Carolina. Establishment of this danger zone will enable the Marine Corps to control...

  4. Factors limiting the operation of structures under high gradient

    SciTech Connect

    Schriber, S.O.

    1986-01-01

    Factors limiting the operation of rf structures under high-gradient conditions are described. Included are recent rf measurements at laboratories in Europe, Asia, and North America and how these measurements relate to earlier data as exemplified by the use of the Kilpatrick criterion (Kp). Operation limitations will cover mechanical, geometry, thermal, and surface constraints and the associated impact on structure design, fabrication, and material selection. Generally, structures operating continuous wave (100% duty factor) appear to be limited to peak surface fields at about twice the Kilpatrick limit, whereas pulsed structures operating with pulse lengths less than a millisecond can attain peak surface fields five times the Kilpatrick limit.

  5. Venus: Atmospheric motion and structure from Mariner 10 pictures

    USGS Publications Warehouse

    Murray, B.C.; Belton, M.J.S.; Edward, Danielson G.; Davies, M.E.; Gault, D.; Hapke, B.; O'Leary, B.; Strom, R.G.; Suomi, V.; Trask, N.

    1974-01-01

    The Mariner 10 television cameras imaged the planet Venus in the visible and near ultraviolet for a period of 8 days at resolutions ranging from 100 meters to 130 kilometers. The general pattern of the atmospheric circulation in the upper tropospheric/lower stratospheric region is displayed in the pictures. Atmospheric flow is symmetrical between north and south hemispheres. The equatorial motions are zonal (east-west) at approximately 100 meters per second, consistent with the previously inferred 4-day retrograde rotation. Angular velocity increases with latitude. The subsolar region, and the region downwind from it, show evidence of large-scale convection that persists in spite of the main zonal motion. Dynamical interaction between the zonal motion and the relatively stationary region of convection is evidenced by bowlike waves.

  6. Venus - Atmospheric motion and structure from Mariner 10 pictures

    NASA Technical Reports Server (NTRS)

    Murray, B. C.; Belton, M. J. S.; Danielson, G. E.; Davies , M. E.; Gault, D.; Hapke, B.; O'Leary, B.; Strom, R. G.; Suomi , V.; Trask, N.

    1974-01-01

    The Mariner 10 television cameras imaged the planet Venus in the visible and near ultraviolet for a period of 8 days at resolutions ranging from 100 meters to 130 kilometers. The general pattern of the atmospheric circulation in the upper tropospheric/lower stratospheric region is displayed in the pictures. Atmospheric flow is symmetrical between north and south hemispheres. The equatorial motions are zonal (east-west) at approximately 100 meters per second, consistent with the previously inferred 4-day retrograde rotation. Angular velocity increases with latitude. The subsolar region, and the region downwind from it, show evidence of large-scale convection that persists in spite of the main zonal motion. Dynamical interaction between the zonal motion and the relatively stationary region of convection is evidenced by bowlike waves.

  7. The Structure of Concrete Operational Thought.

    ERIC Educational Resources Information Center

    Tomlinson-Keasey, C.: And Others

    1979-01-01

    In a four-year longitudinal study of the development of concrete operational thought, children were administered tests assessing seriation; numeration; class inclusion; hierarchical classification; and conservation of mass, weight, and volume. Levels of seriation and numeration skills in kindergarten were powerful predictors of the acquisition of…

  8. Crystal Structure of Allophycocyanin from Marine Cyanobacterium Phormidium sp. A09DM.

    PubMed

    Sonani, Ravi Raghav; Gupta, Gagan Deep; Madamwar, Datta; Kumar, Vinay

    2015-01-01

    Isolated phycobilisome (PBS) sub-assemblies have been widely subjected to X-ray crystallography analysis to obtain greater insights into the structure-function relationship of this light harvesting complex. Allophycocyanin (APC) is the phycobiliprotein always found in the PBS core complex. Phycocyanobilin (PCB) chromophores, covalently bound to conserved Cys residues of α- and β- subunits of APC, are responsible for solar energy absorption from phycocyanin and for transfer to photosynthetic apparatus. In the known APC structures, heterodimers of α- and β- subunits (known as αβ monomers) assemble as trimer or hexamer. We here for the first time report the crystal structure of APC isolated from a marine cyanobacterium (Phormidium sp. A09DM). The crystal structure has been refined against all the observed data to the resolution of 2.51 Å to Rwork (Rfree) of 0.158 (0.229) with good stereochemistry of the atomic model. The Phormidium protein exists as a trimer of αβ monomers in solution and in crystal lattice. The overall tertiary structures of α- and β- subunits, and trimeric quaternary fold of the Phormidium protein resemble the other known APC structures. Also, configuration and conformation of the two covalently bound PCB chromophores in the marine APC are same as those observed in fresh water cyanobacteria and marine red algae. More hydrophobic residues, however, constitute the environment of the chromophore bound to α-subunit of the Phormidium protein, owing mainly to amino acid substitutions in the marine protein. PMID:25923120

  9. Crystal Structure of Allophycocyanin from Marine Cyanobacterium Phormidium sp. A09DM

    PubMed Central

    Gupta, Gagan Deep; Madamwar, Datta

    2015-01-01

    Isolated phycobilisome (PBS) sub-assemblies have been widely subjected to X-ray crystallography analysis to obtain greater insights into the structure-function relationship of this light harvesting complex. Allophycocyanin (APC) is the phycobiliprotein always found in the PBS core complex. Phycocyanobilin (PCB) chromophores, covalently bound to conserved Cys residues of α- and β- subunits of APC, are responsible for solar energy absorption from phycocyanin and for transfer to photosynthetic apparatus. In the known APC structures, heterodimers of α- and β- subunits (known as αβ monomers) assemble as trimer or hexamer. We here for the first time report the crystal structure of APC isolated from a marine cyanobacterium (Phormidium sp. A09DM). The crystal structure has been refined against all the observed data to the resolution of 2.51 Å to Rwork (Rfree) of 0.158 (0.229) with good stereochemistry of the atomic model. The Phormidium protein exists as a trimer of αβ monomers in solution and in crystal lattice. The overall tertiary structures of α- and β- subunits, and trimeric quaternary fold of the Phormidium protein resemble the other known APC structures. Also, configuration and conformation of the two covalently bound PCB chromophores in the marine APC are same as those observed in fresh water cyanobacteria and marine red algae. More hydrophobic residues, however, constitute the environment of the chromophore bound to α-subunit of the Phormidium protein, owing mainly to amino acid substitutions in the marine protein. PMID:25923120

  10. Crystal Structure of Allophycocyanin from Marine Cyanobacterium Phormidium sp. A09DM.

    PubMed

    Sonani, Ravi Raghav; Gupta, Gagan Deep; Madamwar, Datta; Kumar, Vinay

    2015-01-01

    Isolated phycobilisome (PBS) sub-assemblies have been widely subjected to X-ray crystallography analysis to obtain greater insights into the structure-function relationship of this light harvesting complex. Allophycocyanin (APC) is the phycobiliprotein always found in the PBS core complex. Phycocyanobilin (PCB) chromophores, covalently bound to conserved Cys residues of α- and β- subunits of APC, are responsible for solar energy absorption from phycocyanin and for transfer to photosynthetic apparatus. In the known APC structures, heterodimers of α- and β- subunits (known as αβ monomers) assemble as trimer or hexamer. We here for the first time report the crystal structure of APC isolated from a marine cyanobacterium (Phormidium sp. A09DM). The crystal structure has been refined against all the observed data to the resolution of 2.51 Å to Rwork (Rfree) of 0.158 (0.229) with good stereochemistry of the atomic model. The Phormidium protein exists as a trimer of αβ monomers in solution and in crystal lattice. The overall tertiary structures of α- and β- subunits, and trimeric quaternary fold of the Phormidium protein resemble the other known APC structures. Also, configuration and conformation of the two covalently bound PCB chromophores in the marine APC are same as those observed in fresh water cyanobacteria and marine red algae. More hydrophobic residues, however, constitute the environment of the chromophore bound to α-subunit of the Phormidium protein, owing mainly to amino acid substitutions in the marine protein.

  11. The gonadotrophic response of Royal Marines during an operational deployment in Afghanistan.

    PubMed

    Hill, N E; Woods, D R; Delves, S K; Murphy, K G; Davison, A S; Brett, S J; Quinton, R; Turner, S; Stacey, M; Allsopp, A J; Fallowfield, J L

    2015-03-01

    Military training has been associated with changes in the hypothalamic-pituitary-gonadal axis consistent with central hypogonadism. Often such changes have been associated with body mass loss, though sleep deprivation and other psychological stress may also contribute. The effects of deployment in a combat zone on the hypothalamic-pituitary-gonadal axis in military personnel are not known. The objective was to investigate the hypothalamic-pituitary-gonadal axis in male military personnel deployed in Afghanistan. Eighty-nine Royal Marines were investigated pre-deployment, following 3 months in Afghanistan and following 2 weeks mid-tour leave. Testosterone, sex hormone-binding globulin (SHBG), follicle-stimulating hormone (FSH), luteinising hormone (LH), 17-hydroxyprogesterone, androstenedione (AD) and insulin were assayed and body mass recorded. The results showed that body mass (kg) dropped from 83.2 ± 9.2 to 79.2 ± 8.2 kg during the first 3 months of deployment (p < 0.001). Total testosterone did not change, but SHBG increased (30.7 ± 9.7 vs. 42.3 ± 14.1 nmol/L, p < 0.001), resulting in a significant (p < 0.001) fall in calculated free testosterone (435.2 ± 138 vs. 375.1 ± 98 pmol/L). Luteinising hormone and FSH increased by 14.3% (p < 0.001) and 4.9% (p = 0.003) respectively. Free testosterone, SHBG, LH and FSH returned to baseline following 2 weeks of mid-tour leave. Androstenedione (AD) decreased by 14.5% (p = 0.024), and insulin decreased by 26% (p = 0.039), over the course of deployment. In this study of lean Royal Marines, free testosterone decreased during operational deployment to Afghanistan. There was no evidence to suggest major stress-induced central hypogonadism. We postulate that reduced body mass, accompanied by a decrease in insulin and AD synthesis, may have contributed to an elevated SHBG, leading to a decrease in free testosterone.

  12. Genetic structure of marine Borrelia garinii and population admixture with the terrestrial cycle of Lyme borreliosis.

    PubMed

    Gómez-Díaz, Elena; Boulinier, Thierry; Sertour, Natacha; Cornet, Muriel; Ferquel, Elisabeth; McCoy, Karen D

    2011-09-01

    Despite the importance of population structure for the epidemiology of pathogenic bacteria, the spatial and ecological heterogeneity of these populations is often poorly characterized. Here, we investigated the genetic diversity and population structure of the Lyme borreliosis (LB) spirochaete Borrelia garinii in its marine cycle involving colonial seabirds and different host races of the seabird tick Ixodes uriae. Multilocus sequence analyses (MLSA) on eight chromosomal and two plasmid loci (ospA and ospC) indicate that B. garinii circulating in the marine system is highly diverse. Microevolution in marine B. garinii seems to be mainly clonal, but recombination and selection do occur. Sequence types were not evenly distributed among geographic regions, with substantial population subdivision between Atlantic and Pacific Ocean basins. However, no geographic structuring was evident within regions. Results of selection analyses and phylogenetic discordance between chromosomal and plasmid loci indicate adaptive evolution is likely occurring in this system, but no pattern of host or vector-associated divergence was found. Recombination analyses showed evidence for population admixture between terrestrial and marine strains, suggesting that LB spirochaetes are exchanged between these enzootic cycles. Importantly, our results highlight the need to explicitly consider the marine system for a complete understanding of the evolutionary ecology and global epidemiology of Lyme borreliosis.

  13. Puget Sound Operational Forecast System - A Real-time Predictive Tool for Marine Resource Management and Emergency Responses

    SciTech Connect

    Yang, Zhaoqing; Khangaonkar, Tarang; Chase, Jared M.; Wang, Taiping

    2009-12-01

    To support marine ecological resource management and emergency response and to enhance scientific understanding of physical and biogeochemical processes in Puget Sound, a real-time Puget Sound Operational Forecast System (PS-OFS) was developed by the Coastal Ocean Dynamics & Ecosystem Modeling group (CODEM) of Pacific Northwest National Laboratory (PNNL). PS-OFS employs the state-of-the-art three-dimensional coastal ocean model and closely follows the standards and procedures established by National Oceanic and Atmospheric Administration (NOAA) National Ocean Service (NOS). PS-OFS consists of four key components supporting the Puget Sound Circulation and Transport Model (PS-CTM): data acquisition, model execution and product archive, model skill assessment, and model results dissemination. This paper provides an overview of PS-OFS and its ability to provide vital real-time oceanographic information to the Puget Sound community. PS-OFS supports pacific northwest region’s growing need for a predictive tool to assist water quality management, fish stock recovery efforts, maritime emergency response, nearshore land-use planning, and the challenge of climate change and sea level rise impacts. The structure of PS-OFS and examples of the system inputs and outputs, forecast results are presented in details.

  14. Marine biota effects on the compositional structure of the world oceans

    NASA Astrophysics Data System (ADS)

    Kheshgi, H. S.; Flannery, B. P.; Hoffert, M. I.

    1991-03-01

    The vertical structure of total carbon, alkalinity, nutrients, and dissolved oxygen in the world oceans is examined with a one-dimensional equatorial ocean/polar ocean box model. Photosynthesis/respiration cycles affect and are affected by fluxes in the ocean and the structure of the profiles. Marine biota produce by-products that lead to organic and inorganic (calcareous) sediments. In steady state, rates of phosphorous and alkalinity runoff from land are linked to surface nutrient supply, the rates of particulate rain, the degree of anoxia near sediments, the lysocline depth, and thereby control rates of sedimentation. These, in turn, are influenced by internal mixing dynamics and the action of the marine biota. The interdependence of ocean composition and rates of organic and inorganic carbon burial is found to be sensitive to the traits of the marine biosphere.

  15. Geography program, design, structure and operational strategy

    NASA Technical Reports Server (NTRS)

    Alexander, R. H.

    1970-01-01

    The geography program is designed to move systematically toward a capability to increase remote sensing data into operational systems for monitoring land use and related environmental change. The problems of environmental imbalance arising from rapid urbanization and other dramatic changes in land use are considered. These overall problems translate into working level problems of establishing the validity of various sensor-data combinations that will best obtain the regional land use and environmental information. The goal, to better understand, predict, and assist policy makers to regulate urban and regional land use changes resulting from population growth and technological advancement, is put forth.

  16. A sweet new wave: structures and mechanisms of enzymes that digest polysaccharides from marine algae.

    PubMed

    Hehemann, Jan-Hendrik; Boraston, Alisdair B; Czjzek, Mirjam

    2014-10-01

    Marine algae contribute approximately half of the global primary production. The large amounts of polysaccharides synthesized by these algae are degraded and consumed by microbes that utilize carbohydrate-active enzymes (CAZymes), thus creating one of the largest and most dynamic components of the Earth's carbon cycle. Over the last decade, structural and functional characterizations of marine CAZymes have revealed a diverse set of scaffolds and mechanisms that are used to degrade agars, carrageenan, alginate and ulvan-polysaccharides from red, brown and green seaweeds, respectively. The analysis of these CAZymes is not only expanding our understanding of their functions but is enabling the enhanced annotation of (meta)-genomic data sets, thus promoting an improved understanding of microbes that drive this marine component of the carbon cycle. Furthermore, this information is setting a foundation that will enable marine algae to be harnessed as a novel resource for biorefineries. In this review, we cover the most recent structural and functional analyses of marine CAZymes that are specialized in the digestion of macro-algal polysaccharides.

  17. CMEMS (Copernicus Marine Environment Monitoring Service) In Situ Thematic Assembly Centre: A service for operational Oceanography

    NASA Astrophysics Data System (ADS)

    Manzano Muñoz, Fernando; Pouliquen, Sylvie; Petit de la Villeon, Loic; Carval, Thierry; Loubrieu, Thomas; Wedhe, Henning; Sjur Ringheim, Lid; Hammarklint, Thomas; Tamm, Susanne; De Alfonso, Marta; Perivoliotis, Leonidas; Chalkiopoulos, Antonis; Marinova, Veselka; Tintore, Joaquin; Troupin, Charles

    2016-04-01

    Copernicus, previously known as GMES (Global Monitoring for Environment and Security), is the European Programme for the establishment of a European capacity for Earth Observation and Monitoring. Copernicus aims to provide a sustainable service for Ocean Monitoring and Forecasting validated and commissioned by users. From May 2015, the Copernicus Marine Environment Monitoring Service (CMEMS) is working on an operational mode through a contract with services engagement (result is regular data provision). Within CMEMS, the In Situ Thematic Assembly Centre (INSTAC) distributed service integrates in situ data from different sources for operational oceanography needs. CMEMS INSTAC is collecting and carrying out quality control in a homogeneous manner on data from providers outside Copernicus (national and international networks), to fit the needs of internal and external users. CMEMS INSTAC has been organized in 7 regional Dissemination Units (DUs) to rely on the EuroGOOS ROOSes. Each DU aggregates data and metadata provided by a series of Production Units (PUs) acting as an interface for providers. Homogeneity and standardization are key features to ensure coherent and efficient service. All DUs provide data in the OceanSITES NetCDF format 1.2 (based on NetCDF 3.6), which is CF compliant, relies on SeaDataNet vocabularies and is able to handle profile and time-series measurements. All the products, both near real-time (NRT) and multi-year (REP), are available online for every CMEMS registered user through an FTP service. On top of the FTP service, INSTAC products are available through Oceanotron, an open-source data server dedicated to marine observations dissemination. It provides services such as aggregation on spatio-temporal coordinates and observed parameters, and subsetting on observed parameters and metadata. The accuracy of the data is checked on various levels. Quality control procedures are applied for the validity of the data and correctness tests for the

  18. 46 CFR 15.1107 - Maintenance of merchant mariners' records by owner or operator.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... as results of a recent evaluation by a medical professional certifying that the mariner is physically...., record of training completed, and of relevant on-the-job experience acquired). (c) Competency in...

  19. Marine geophysics. New global marine gravity model from CryoSat-2 and Jason-1 reveals buried tectonic structure.

    PubMed

    Sandwell, David T; Müller, R Dietmar; Smith, Walter H F; Garcia, Emmanuel; Francis, Richard

    2014-10-01

    Gravity models are powerful tools for mapping tectonic structures, especially in the deep ocean basins where the topography remains unmapped by ships or is buried by thick sediment. We combined new radar altimeter measurements from satellites CryoSat-2 and Jason-1 with existing data to construct a global marine gravity model that is two times more accurate than previous models. We found an extinct spreading ridge in the Gulf of Mexico, a major propagating rift in the South Atlantic Ocean, abyssal hill fabric on slow-spreading ridges, and thousands of previously uncharted seamounts. These discoveries allow us to understand regional tectonic processes and highlight the importance of satellite-derived gravity models as one of the primary tools for the investigation of remote ocean basins. PMID:25278606

  20. Marine geophysics. New global marine gravity model from CryoSat-2 and Jason-1 reveals buried tectonic structure.

    PubMed

    Sandwell, David T; Müller, R Dietmar; Smith, Walter H F; Garcia, Emmanuel; Francis, Richard

    2014-10-01

    Gravity models are powerful tools for mapping tectonic structures, especially in the deep ocean basins where the topography remains unmapped by ships or is buried by thick sediment. We combined new radar altimeter measurements from satellites CryoSat-2 and Jason-1 with existing data to construct a global marine gravity model that is two times more accurate than previous models. We found an extinct spreading ridge in the Gulf of Mexico, a major propagating rift in the South Atlantic Ocean, abyssal hill fabric on slow-spreading ridges, and thousands of previously uncharted seamounts. These discoveries allow us to understand regional tectonic processes and highlight the importance of satellite-derived gravity models as one of the primary tools for the investigation of remote ocean basins.

  1. APPLICATION OF COMPUTER-AIDED TOMOGRAPHY TO VISUALIZE AND QUANTIFY BIOGENIC STRUCTURES IN MARINE SEDIMENTS

    EPA Science Inventory

    We used computer-aided tomography (CT) for 3D visualization and 2D analysis of

    marine sediment cores from 3 stations (at 10, 75 and 118 m depths) with different environmental

    impact. Biogenic structures such as tubes and burrows were quantified and compared among st...

  2. Total Synthesis and Structure-Activity Relationship of Glycoglycerolipids from Marine Organisms

    PubMed Central

    Zhang, Jun; Li, Chunxia; Yu, Guangli; Guan, Huashi

    2014-01-01

    Glycoglycerolipids occur widely in natural products, especially in the marine species. Glycoglycerolipids have been shown to possess a variety of bioactivities. This paper will review the different methodologies and strategies for the synthesis of biological glycoglycerolipids and their analogs for bioactivity assay. In addition, the bioactivities and structure-activity relationship of the glycoglycerolipids are also briefly outlined. PMID:24945415

  3. Quantifying seascape structure: Extending terrestrial spatial pattern metrics to the marine realm

    USGS Publications Warehouse

    Wedding, L.M.; Christopher, L.A.; Pittman, S.J.; Friedlander, A.M.; Jorgensen, S.

    2011-01-01

    Spatial pattern metrics have routinely been applied to characterize and quantify structural features of terrestrial landscapes and have demonstrated great utility in landscape ecology and conservation planning. The important role of spatial structure in ecology and management is now commonly recognized, and recent advances in marine remote sensing technology have facilitated the application of spatial pattern metrics to the marine environment. However, it is not yet clear whether concepts, metrics, and statistical techniques developed for terrestrial ecosystems are relevant for marine species and seascapes. To address this gap in our knowledge, we reviewed, synthesized, and evaluated the utility and application of spatial pattern metrics in the marine science literature over the past 30 yr (1980 to 2010). In total, 23 studies characterized seascape structure, of which 17 quantified spatial patterns using a 2-dimensional patch-mosaic model and 5 used a continuously varying 3-dimensional surface model. Most seascape studies followed terrestrial-based studies in their search for ecological patterns and applied or modified existing metrics. Only 1 truly unique metric was found (hydrodynamic aperture applied to Pacific atolls). While there are still relatively few studies using spatial pattern metrics in the marine environment, they have suffered from similar misuse as reported for terrestrial studies, such as the lack of a priori considerations or the problem of collinearity between metrics. Spatial pattern metrics offer great potential for ecological research and environmental management in marine systems, and future studies should focus on (1) the dynamic boundary between the land and sea; (2) quantifying 3-dimensional spatial patterns; and (3) assessing and monitoring seascape change. ?? Inter-Research 2011.

  4. The Structural Diversity of Carbohydrate Antigens of Selected Gram-Negative Marine Bacteria

    PubMed Central

    Nazarenko, Evgeny L.; Crawford, Russell J.; Ivanova, Elena P.

    2011-01-01

    Marine microorganisms have evolved for millions of years to survive in the environments characterized by one or more extreme physical or chemical parameters, e.g., high pressure, low temperature or high salinity. Marine bacteria have the ability to produce a range of biologically active molecules, such as antibiotics, toxins and antitoxins, antitumor and antimicrobial agents, and as a result, they have been a topic of research interest for many years. Among these biologically active molecules, the carbohydrate antigens, lipopolysaccharides (LPSs, O-antigens) found in cell walls of Gram-negative marine bacteria, show great potential as candidates in the development of drugs to prevent septic shock due to their low virulence. The structural diversity of LPSs is thought to be a reflection of the ability for these bacteria to adapt to an array of habitats, protecting the cell from being compromised by exposure to harsh environmental stress factors. Over the last few years, the variety of structures of core oligosaccharides and O-specific polysaccharides from LPSs of marine microrganisms has been discovered. In this review, we discuss the most recently encountered structures that have been identified from bacteria belonging to the genera Aeromonas, Alteromonas, Idiomarina, Microbulbifer, Pseudoalteromonas, Plesiomonas and Shewanella of the Gammaproteobacteria phylum; Sulfitobacter and Loktanella of the Alphaproteobactera phylum and to the genera Arenibacter, Cellulophaga, Chryseobacterium, Flavobacterium, Flexibacter of the Cytophaga-Flavobacterium-Bacteroides phylum. Particular attention is paid to the particular chemical features of the LPSs, such as the monosaccharide type, non-sugar substituents and phosphate groups, together with some of the typifying traits of LPSs obtained from marine bacteria. A possible correlation is then made between such features and the environmental adaptations undertaken by marine bacteria. PMID:22073003

  5. Structured heterogeneity in a marine terrace chronosequence: Upland mottling

    USGS Publications Warehouse

    Schulz, Marjorie S.; Stonestrom, David A.; Lawrence, Corey; Bullen, Thomas D.; Fitzpatrick, John; Kyker-Snowman, Emily; Manning, Jane; Mnich, Meagan

    2016-01-01

    Soil mottles generally are interpreted as a product of reducing conditions during periods of water saturation. The upland soils of the Santa Cruz, CA, marine terrace chronosequence display an evolving sequence of reticulate mottling from the youngest soil (65 ka) without mottles to the oldest soil (225 ka) with well-developed mottles. The mottles consist of an interconnected network of clay and C-enriched regions (gray, 2.5Y 6/1) bordered by leached parent material (white, 2.5Y 8/1) within a diminishing matrix of oxidized parent material (orange, 7.5YR 5/8). The mottles develop in soils that formed from relatively uniform nearshore sediments and occur below the depth of soil bioturbation. To explore how a presumably wetland feature occurs in an unsaturated upland soil, physical and chemical characteristics of mottle separates (orange, gray, and white) were compared through the deep time represented by the soil chronosequence. Mineralogical, isotopic, and surface-area differences among mottle separates indicate that rhizogenic centimeter-scale mass transfer acting across millennia is an integral part of weathering, pedogenesis, and C and nutrient transfer. Elemental analysis, electron microscopy, and Fe-isotope systematics indicate that mottle development is driven by deep roots together with their fungal and microbial symbionts. Taken together, these data suggest that deep soil horizons on old stable landforms can develop reticulate mottling as the long-term imprint of rhizospheric processes. The processes of rhizogenic mottle formation appear to regulate pedogenesis, nutrients, and C sequestration at depth in unsaturated zones.

  6. Population genetic structure of the striped silverside, Atherinomorus endrachtensis (Atherinidae, Atheriniformes, Teleostei), inhabiting marine lakes and adjacent lagoons in Palau: marine lakes are "Islands" for marine species.

    PubMed

    Gotoh, Ryo O; Chiba, Satoru N; Goto, Tadasuke V; Tamate, Hidetoshi B; Hanzawa, Naoto

    2011-01-01

    Although evidence for the evolution of terrestrial species on islands continues to rapidly accumulate, little is known about the evolution of marine species in geographically isolated environments such as islands as ocean currents often facilitate gene flow among populations. In this study, we focused on marine lakes of the Palau Islands, which are considered to be true analogues of terrestrial islands for marine species. To examine evolutionary processes in marine lakes, we conducted population genetic analyses on marine lake and lagoon populations of the striped silverside, Atherinomorus endrachtensis, using two mitochondrial DNA markers differing in evolutionary rate, the cytochrome b gene and the control region. The analyses revealed that the amount of genetic diversity of marine lake populations is much lower than that of lagoon populations and high levels of genetic differentiation occur among marine lake and lagoon populations. The present study has shown that marine lake populations have been completely isolated and have differentiated from lagoon populations, and each marine lake population is experiencing different evolutionary processes. These findings clearly demonstrate that marine lakes are excellent environments for the evolutionary study of marine species.

  7. Turbulence structure of a cloud-capped marine atmospheric boundary layer analyzed from ASTEX field data

    SciTech Connect

    Tjernstroem, M.

    1994-12-31

    The cloud-capped marine atmospheric boundary layer has gained attention for several reasons, one being the impact marine stratocumulus is believed to have on the climate system. To really understand the sensitivity of the climate system to marine low level clouds, let alone to predict their effect on climate for decades to come, require numerical modeling. Furthermore, in addition to there being several other important processes, e.g., radiative transfer, turbulent mixing and transport, etc., many of these interact in a way not fully understood. Parameterization of such processes in models on all scales is fundamental and cannot be performed without sound knowledge of important scaling and structures. Concerning in-cloud turbulence, such knowledge can today essentially only be gained from analysis of in-situ experimental data. Furthermore, if model parameterizations are successful, models can also be used to increase the understanding of the physics behind observed motion systems and how they interact with the PBL dynamics.

  8. Glycosaminoglycans analogs from marine invertebrates: structure, biological effects, and potential as new therapeutics.

    PubMed

    Pavão, Mauro S G

    2014-01-01

    In this review, several glycosaminoglycan analogs obtained from different marine invertebrate are reported. The structure, biological activity and mechanism of action of these unique molecules are detailed reviewed and exemplified by experiments in vitro and in vivo. Among the glycans studied are low-sulfated heparin-like polymers from ascidians, containing significant anticoagulant activity and no bleeding effect; dermatan sulfates with significant neurite outgrowth promoting activity and anti-P-selectin from ascidians, and a unique fucosylated chondroitin sulfate from sea cucumbers, possessing anticoagulant activity after oral administration and high anti P- and L-selectin activities. The therapeutic value and safety of these invertebrate glycans have been extensively proved by several experimental animal models of diseases, including thrombosis, inflammation and metastasis. These invertebrate glycans can be obtained in high concentrations from marine organisms that have been used as a food source for decades, and usually obtained from marine farms in sufficient quantities to be used as starting material for new therapeutics.

  9. Global tree network for computing structures enabling global processing operations

    DOEpatents

    Blumrich; Matthias A.; Chen, Dong; Coteus, Paul W.; Gara, Alan G.; Giampapa, Mark E.; Heidelberger, Philip; Hoenicke, Dirk; Steinmacher-Burow, Burkhard D.; Takken, Todd E.; Vranas, Pavlos M.

    2010-01-19

    A system and method for enabling high-speed, low-latency global tree network communications among processing nodes interconnected according to a tree network structure. The global tree network enables collective reduction operations to be performed during parallel algorithm operations executing in a computer structure having a plurality of the interconnected processing nodes. Router devices are included that interconnect the nodes of the tree via links to facilitate performance of low-latency global processing operations at nodes of the virtual tree and sub-tree structures. The global operations performed include one or more of: broadcast operations downstream from a root node to leaf nodes of a virtual tree, reduction operations upstream from leaf nodes to the root node in the virtual tree, and point-to-point message passing from any node to the root node. The global tree network is configurable to provide global barrier and interrupt functionality in asynchronous or synchronized manner, and, is physically and logically partitionable.

  10. Effect of physical sediments reworking on hydrocarbon degradation and bacterial community structure in marine coastal sediments.

    PubMed

    Duran, Robert; Bonin, Patricia; Jezequel, Ronan; Dubosc, Karine; Gassie, Claire; Terrisse, Fanny; Abella, Justine; Cagnon, Christine; Militon, Cecile; Michotey, Valérie; Gilbert, Franck; Cuny, Philippe; Cravo-Laureau, Cristiana

    2015-10-01

    The present study aimed to examine whether the physical reworking of sediments by harrowing would be suitable for favouring the hydrocarbon degradation in coastal marine sediments. Mudflat sediments were maintained in mesocosms under conditions as closer as possible to those prevailing in natural environments with tidal cycles. Sediments were contaminated with Ural blend crude oil, and in half of them, harrowing treatment was applied in order to mimic physical reworking of surface sediments. Hydrocarbon distribution within the sediment and its removal was followed during 286 days. The harrowing treatment allowed hydrocarbon compounds to penetrate the first 6 cm of the sediments, and biodegradation indexes (such as n-C18/phytane) indicated that biodegradation started 90 days before that observed in untreated control mesocosms. However, the harrowing treatment had a severe impact on benthic organisms reducing drastically the macrofaunal abundance and diversity. In the harrowing-treated mesocosms, the bacterial abundance, determined by 16S rRNA gene Q-PCR, was slightly increased; and terminal restriction fragment length polymorphism (T-RFLP) analyses of 16S rRNA genes showed distinct and specific bacterial community structure. Co-occurrence network and canonical correspondence analyses (CCA) based on T-RFLP data indicated the main correlations between bacterial operational taxonomic units (OTUs) as well as the associations between OTUs and hydrocarbon compound contents further supported by clustered correlation (ClusCor) analysis. The analyses highlighted the OTUs constituting the network structural bases involved in hydrocarbon degradation. Negative correlations indicated the possible shifts in bacterial communities that occurred during the ecological succession.

  11. Effect of physical sediments reworking on hydrocarbon degradation and bacterial community structure in marine coastal sediments.

    PubMed

    Duran, Robert; Bonin, Patricia; Jezequel, Ronan; Dubosc, Karine; Gassie, Claire; Terrisse, Fanny; Abella, Justine; Cagnon, Christine; Militon, Cecile; Michotey, Valérie; Gilbert, Franck; Cuny, Philippe; Cravo-Laureau, Cristiana

    2015-10-01

    The present study aimed to examine whether the physical reworking of sediments by harrowing would be suitable for favouring the hydrocarbon degradation in coastal marine sediments. Mudflat sediments were maintained in mesocosms under conditions as closer as possible to those prevailing in natural environments with tidal cycles. Sediments were contaminated with Ural blend crude oil, and in half of them, harrowing treatment was applied in order to mimic physical reworking of surface sediments. Hydrocarbon distribution within the sediment and its removal was followed during 286 days. The harrowing treatment allowed hydrocarbon compounds to penetrate the first 6 cm of the sediments, and biodegradation indexes (such as n-C18/phytane) indicated that biodegradation started 90 days before that observed in untreated control mesocosms. However, the harrowing treatment had a severe impact on benthic organisms reducing drastically the macrofaunal abundance and diversity. In the harrowing-treated mesocosms, the bacterial abundance, determined by 16S rRNA gene Q-PCR, was slightly increased; and terminal restriction fragment length polymorphism (T-RFLP) analyses of 16S rRNA genes showed distinct and specific bacterial community structure. Co-occurrence network and canonical correspondence analyses (CCA) based on T-RFLP data indicated the main correlations between bacterial operational taxonomic units (OTUs) as well as the associations between OTUs and hydrocarbon compound contents further supported by clustered correlation (ClusCor) analysis. The analyses highlighted the OTUs constituting the network structural bases involved in hydrocarbon degradation. Negative correlations indicated the possible shifts in bacterial communities that occurred during the ecological succession. PMID:25847440

  12. Organization and operation of the marine ornamental fish and invertebrate export fishery in Puerto Rico.

    PubMed

    Legorel, Richard S; Hardin, Mark P; Ter-Ghazaryan, Diana

    2005-05-01

    This fishery was examined utilizing public records, stakeholder interviews, and operational site visits to describe the fishery for the Puerto Rico Coral Reef Advisory Committee as a first step toward development of policies for the effective management of these natural resources. The fishery is not large, including fewer than 20 licensed fishers operating primarily on the west end of the island. Only three operators export product, with the remaining fishers providing specimens to the exporters based upon customer orders. Most collection of coral reef species occurs over hard rubble zones mixed with relic reef structures and rock, or on the sides and frontal areas of active reefs. Other species are collected from among mangrove prop root zones, tidal flats, and seagrass beds. Collections are made using simple barrier and dip nets for fish and motile invertebrates such as shrimp. Invertebrates such as crabs, starfish, and sea cucumbers are commonly collected by overturning small rocks, gathering the specimens, and then replacing the rocks in their original positions. Specimens are carried to the boat and transferred to individual cup holders to maximize survival. Although statements concerning former use of chemicals to assist capture were noted, no evidence of current chemical use was observed. Specimens are held in re-circulating seawater systems onshore until collections are aggregated and shipped. The fishery strives to operate with mortality of<1%, as mortalities of>3% are described as unacceptable to customers. More than 100 fish species are collected in this fishery, but the top ten species account for >70% of the total numbers and >60% of the total value of the fishery, with a single species, Gramma loreto (Royal Gramma), comprising >40% of the numbers. More than 100 species of invertebrates are collected, but this fishery is also dominated by a handful of species, including anemones, hermit crabs, turbo snails, serpent starfish, and feather duster

  13. Specific sulfation and glycosylation—a structural combination for the anticoagulation of marine carbohydrates

    PubMed Central

    Pomin, Vitor H.; Mourão, Paulo A. S.

    2014-01-01

    Based on considered achievements of the last 25 years, specific combinations of sulfation patterns and glycosylation types have been proved to be key structural players for the anticoagulant activity of certain marine glycans. These conclusions were obtained from comparative and systematic analyses on the structure-anticoagulation relationships of chemically well-defined sulfated polysaccharides of marine invertebrates and red algae. These sulfated polysaccharides are known as sulfated fucans (SFs), sulfated galactans (SGs) and glycosaminoglycans (GAGs). The structural combinations necessary for the anticoagulant activities are the 2-sulfation in α-L-SGs, the 2,4-di-sulfation in α-L-fucopyranosyl units found as composing units of certain sea-urchin and sea-cucumber linear SFs, or as branching units of the fucosylated chondroitin sulfate, a unique GAG from sea-cucumbers. Another unique GAG type from marine organisms is the dermatan sulfate isolated from ascidians. The high levels of 4-sulfation at the galactosamine units combined with certain levels of 2-sulfation at the iduronic acid units is the anticoagulant structural requirements of these GAGs. When the backbones of red algal SGs are homogeneous, the anticoagulation is proportionally dependent of their sulfation content. Finally, 4-sulfation was observed to be the structural motif required to enhance the inhibition of thrombin via heparin cofactor-II by invertebrate SFs. PMID:24639954

  14. Specific sulfation and glycosylation-a structural combination for the anticoagulation of marine carbohydrates.

    PubMed

    Pomin, Vitor H; Mourão, Paulo A S

    2014-01-01

    Based on considered achievements of the last 25 years, specific combinations of sulfation patterns and glycosylation types have been proved to be key structural players for the anticoagulant activity of certain marine glycans. These conclusions were obtained from comparative and systematic analyses on the structure-anticoagulation relationships of chemically well-defined sulfated polysaccharides of marine invertebrates and red algae. These sulfated polysaccharides are known as sulfated fucans (SFs), sulfated galactans (SGs) and glycosaminoglycans (GAGs). The structural combinations necessary for the anticoagulant activities are the 2-sulfation in α-L-SGs, the 2,4-di-sulfation in α-L-fucopyranosyl units found as composing units of certain sea-urchin and sea-cucumber linear SFs, or as branching units of the fucosylated chondroitin sulfate, a unique GAG from sea-cucumbers. Another unique GAG type from marine organisms is the dermatan sulfate isolated from ascidians. The high levels of 4-sulfation at the galactosamine units combined with certain levels of 2-sulfation at the iduronic acid units is the anticoagulant structural requirements of these GAGs. When the backbones of red algal SGs are homogeneous, the anticoagulation is proportionally dependent of their sulfation content. Finally, 4-sulfation was observed to be the structural motif required to enhance the inhibition of thrombin via heparin cofactor-II by invertebrate SFs.

  15. Review: an overview about the structure-function relationship of marine sulfated homopolysaccharides with regular chemical structures.

    PubMed

    Pomin, Vitor H

    2009-08-01

    Efforts in both structural and biological studies of sulfated polysaccharides from marine organisms have increased significantly over the last 10 years. Marine invertebrates have been demonstrated to be a source of glycans with particularly well-defined chemical structures, although ordered structural patterns can also be found occasionally in algal sources such as red seaweeds. Clear and regular structural features are essential for a good understanding of the biological activities of these marine homopolysaccharides of which sulfated fucans and sulfated galactans are the most studied. Herein, the main structural features (sugar type, sulfation and glycosylation sites, and orientational binding preferences) of both sulfated fucans and galactans are individually reviewed with regard to their specific contributions to two frequently described biological functions: the acrosome reaction (a physiological event of sea-urchin fertilization), and the anticoagulant and antithrombotic activities (an alternative and highly desirable pharmacological application). (c) 2009 Wiley Periodicals, Inc. Biopolymers 91: 601-609, 2009.This article was originally published online as an accepted preprint. The "Published Online" date corresponds to the preprint version. You can request a copy of the preprint by emailing the Biopolymers editorial office at biopolymers@wiley.com.

  16. Structure and mechanical properties of selected protective systems in marine organisms.

    PubMed

    Naleway, Steven E; Taylor, Jennifer R A; Porter, Michael M; Meyers, Marc A; McKittrick, Joanna

    2016-02-01

    Marine organisms have developed a wide variety of protective strategies to thrive in their native environments. These biological materials, although formed from simple biopolymer and biomineral constituents, take on many intricate and effective designs. The specific environmental conditions that shape all marine organisms have helped modify these materials into their current forms: complete hydration, and variation in hydrostatic pressure, temperature, salinity, as well as motion from currents and swells. These conditions vary throughout the ocean, being more consistent in the pelagic and deep benthic zones while experiencing more variability in the nearshore and shallows (e.g. intertidal zones, shallow bays and lagoons, salt marshes and mangrove forests). Of note, many marine organisms are capable of migrating between these zones. In this review, the basic building blocks of these structural biological materials and a variety of protective strategies in marine organisms are discussed with a focus on their structure and mechanical properties. Finally, the bioinspired potential of these biological materials is discussed. PMID:26652472

  17. Simple rules for establishment of effective marine protected areas in an age-structured metapopulation.

    PubMed

    Takashina, Nao

    2016-02-21

    The implementation of effective protected areas is one of the central goals of modern conservation biology. In the context of fisheries management and marine ecosystem conservation, marine reserves often play a significant role to achieve sustainable fisheries management. Consequently, a substantial number of studies have been conducted to establish broad rules for the creation of MPAs, or to test the effects of MPAs in specific regions. However, there still exist many challenges for implementing MPAs that are effective at meeting their goals. Deducing theoretical conditions guaranteeing that the introduction of marine reserves will increase fisheries yields in age-structured population dynamics is one such challenge. To derive such conditions, a simple mathematical model is developed that follows an age-structured metapopulation dynamics of a sedentary species. The obtained results suggest that a sufficiently high fishing mortality rate and moderate recruitment success of an individual's eggs is a necessary for marine reserves to increase fisheries yields. The numerical calculations were conducted with the parameters of red abalone (Haliotis rufescens) to visualize and to check validity of the analytical results. They show good agreement with the analytical results, as well as the results obtained in the previous works.

  18. Simple rules for establishment of effective marine protected areas in an age-structured metapopulation.

    PubMed

    Takashina, Nao

    2016-02-21

    The implementation of effective protected areas is one of the central goals of modern conservation biology. In the context of fisheries management and marine ecosystem conservation, marine reserves often play a significant role to achieve sustainable fisheries management. Consequently, a substantial number of studies have been conducted to establish broad rules for the creation of MPAs, or to test the effects of MPAs in specific regions. However, there still exist many challenges for implementing MPAs that are effective at meeting their goals. Deducing theoretical conditions guaranteeing that the introduction of marine reserves will increase fisheries yields in age-structured population dynamics is one such challenge. To derive such conditions, a simple mathematical model is developed that follows an age-structured metapopulation dynamics of a sedentary species. The obtained results suggest that a sufficiently high fishing mortality rate and moderate recruitment success of an individual's eggs is a necessary for marine reserves to increase fisheries yields. The numerical calculations were conducted with the parameters of red abalone (Haliotis rufescens) to visualize and to check validity of the analytical results. They show good agreement with the analytical results, as well as the results obtained in the previous works. PMID:26723532

  19. The Structure of Parafermion Vertex Operator Algebras: General Case

    NASA Astrophysics Data System (ADS)

    Dong, Chongying; Wang, Qing

    2010-11-01

    The structure of the parafermion vertex operator algebra associated to an integrable highest weight module for any affine Kac-Moody algebra is studied. In particular, a set of generators for this algebra has been determined.

  20. 75 FR 68767 - Taking of Threatened or Endangered Marine Mammals Incidental to Commercial Fishing Operations

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-11-09

    ... proposed 2011 MMPA List of Fisheries (LOF) (75 FR 36318, June 25, 2010), the draft 2010 marine mammal stock... (e.g., proposed for CNP humpback whales in 75 FR 8305, February 24, 2010 and final in 75 FR 29984... relevant to incidental take permits (64 FR 28800, May 27, 1999): (1) The threshold for...

  1. 76 FR 42082 - Taking of Marine Mammals Incidental to Commercial Fishing Operations; False Killer Whale Take...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-07-18

    ... of Fisheries (75 FR 68468, November 8, 2010) identifies several other species or stocks of marine... from commercial fishing will have a negligible impact on CNP humpback whales (75 FR 29984, May 28, 2010... January 19, 2010 (75 FR 2853), and selected team members according to guidance provided in MMPA...

  2. 40 CFR 63.651 - Marine tank vessel loading operation provisions.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... terms not defined in § 63.641 shall have the meaning given them in subpart A or in 40 CFR part 63... CFR part 63, subpart Y does not apply. The compliance time is specified in § 63.640(h)(3). ... 40 Protection of Environment 10 2010-07-01 2010-07-01 false Marine tank vessel loading...

  3. Test assessment of RC structures in marine environment: the Geiger Key Bridge

    NASA Astrophysics Data System (ADS)

    Loreto, G.; Di Benedetti, M.; Nanni, A.

    2012-04-01

    Reinforced concrete marine structures are highly vulnerable to corrosion due to chloride ion attack; the severity of the attack being dependent on, among other factors, the prevailing climatic condition. The aggressiveness of the warm marine environment of Florida has led to the premature deterioration of numerous bridges and building along the coastline. This paper describes a methodology for structural assessment of concrete bridges while incorporating analysis uncertainty. The procedure includes the use of visual, electrochemical and non-destructive methods in order to define the cause and the level of concrete deterioration. A probabilistic mechanistic model is used to generate the distribution of the time to corrosion initiation based on statistical models of the governing parameters obtained from field data. The proposed methodology is applied to predict the time to corrosion initiation and predict the residual service life of the reinforcing steel in the concrete girders of the Geiger Bridge in Key West, FL.

  4. Hopf-algebraic structure of combinatorial objects and differential operators

    NASA Technical Reports Server (NTRS)

    Grossman, Robert; Larson, Richard G.

    1989-01-01

    A Hopf-algebraic structure on a vector space which has as basis a family of trees is described. Some applications of this structure to combinatorics and to differential operators are surveyed. Some possible future directions for this work are indicated.

  5. Actinoranone, A Cytotoxic Meroterpenoid of Unprecedented Structure from a Marine Adapted Streptomyces sp

    PubMed Central

    Nam, Sang-Jip; Kauffman, Christopher A.; Paul, Lauren A.; Jensen, Paul R.

    2014-01-01

    The isolation and structure elucidation of a new meroterpenoid, actinoranone (1), produced by a marine bacterium closely related to the genus Streptomyces is reported. Actinoranone is composed of an unprecedented dihydronaphthalenone polyketide linked to a bicyclic diterpenoid. The stereochemistry of 1 was defined by application of the advanced Mosher's method and by interpretation of spectroscopic data. Actinoranone (1) is significantly cytotoxic to HCT-116 human colon cancer cells with an LD50 = 2.0 μg/mL. PMID:24152065

  6. Mariner 9 photographs of small-scale volcanic structures on Mars

    NASA Technical Reports Server (NTRS)

    Greeley, R.

    1972-01-01

    Surface features on the flanks of Martian shield volcanoes photographed by Mariner 9 are identified as lava flow channels, rift zones, and partly collapsed lava tubes by comparisons with similar structures on the flanks of Mauna Loa shield volcano, Hawaii. From these identifications, the composition of the Martian lava flows is interpreted to be basaltic, with viscosities ranging from those of fluid pahoehoe to more viscous aa.

  7. Isolation and structural elucidation of chondrosterins F-H from the marine fungus Chondrostereum sp.

    PubMed

    Li, Hou-Jin; Chen, Ting; Xie, Ying-Lu; Chen, Wen-Dan; Zhu, Xiao-Feng; Lan, Wen-Jian

    2013-02-01

    The marine fungus Chondrostereum sp. was collected from a soft coral of the species Sarcophyton tortuosum from the South China Sea. Three new compounds, chondrosterins F-H (1, 4 and 5), together with three known compounds, incarnal (2), arthrosporone (3), and (2E)-decene-4,6,8-triyn-1-ol (6), were isolated. Their structures were elucidated primarily based on NMR and MS data. Incarnal (2) exhibited potent cytotoxic activity against various cancer cell lines.

  8. [Isolation and structural elucidation of secondary metabolites from marine Streptomyces sp. SCSIO 1934].

    PubMed

    Niu, Siwen; Li, Sumei; Tian, Xinpeng; Hu, Tao; Ju, Jianhua; Ynag, Xiaohong; Zhang, Si; Zhang, Changsheng

    2011-07-01

    Marine Actinobacteria are emerging as new resources for bioactive natural products with promise in novel drug discovery. In recent years, the richness and diversity of marine Actinobacteria from the South China Sea and their ability in producing bioactive products have been investigated. The objective of this work is to isolate and identify bioactive secondary metabolites from a marine actinobacterium SCSIO 1934 derived from sediments of South China Sea. The strain was identified as a Streptomyces spieces by analyzing its 16S rDNA sequence. Streptomyces sp. SCSIO 1934 was fermented under optimized conditions and seven bioactive secondary metabolites were isolated and purified by chromatographic methods including colum chromatography over silica gel and Sephadex LH-20. Their structures were elucidated as 17-O-demethylgeldanamycin (1), lebstatin (2), 17-O-demethyllebstatin (3), nigericin (4), nigericin sodium salt (5), abierixin (6), respectively, by detailed NMR spectroscopic data (1H, 13C, COSY, HSQC and HMBC). This work provided a new marine actinobacterium Streptomyces sp. SCSIO 1934, capable of producing diverse bioactive natural products.

  9. Diurnal variation in the turbulent structure of the cloudy marine boundary layer during FIRE 1987

    NASA Technical Reports Server (NTRS)

    Hignett, Phillip

    1990-01-01

    During the 1987 FIRE marine stratocumulus experiment the U.K. Meteorological Office operated a set of turbulence probes attached to the tether cable of a balloon based on San Nicolas Island. Typically six probes were used; each probe is fitted with Gill propeller anemometers, a platinum resistance thermometer and wet and dry thermistors, to permit measurements of the fluxes of momentum, heat, and humidity. The orientation of each probe is determined from a pair of inclinometers and a three-axis magnetometer. Sufficient information is available to allow the measured wind velocities to be corrected for the motion of the balloon. On the 14 to 15 July measurements were made over the period 1530 to 1200 UTC and again, after a short break for battery recharging and topping-up the balloon, between 0400 to 0900 UTC. Data were therefore recorded from morning to early evening, and again for a period overnight. Six probes were available for the daytime measurements, five for the night. Data were recorded at 4 Hz for individual periods of a little over an hour. The intention was to keep a minimum of one probe at or just above cloud top; small changes in balloon height were necessary to accommodate changes in inversion height. The ability of the balloon system to make simultaneous measurements at several levels allows the vertical structure of the boundary layer to be displayed without resort to composites. Turbulent statistics were calculated from 2 hour periods, one straddling local noon and one at night. These were subdivided into half-hour averaging intervals for the evaluation of variances and fluxes.

  10. Quantifying the response of structural complexity and community composition to environmental change in marine communities.

    PubMed

    Ferrari, Renata; Bryson, Mitch; Bridge, Tom; Hustache, Julie; Williams, Stefan B; Byrne, Maria; Figueira, Will

    2016-05-01

    Habitat structural complexity is a key factor shaping marine communities. However, accurate methods for quantifying structural complexity underwater are currently lacking. Loss of structural complexity is linked to ecosystem declines in biodiversity and resilience. We developed new methods using underwater stereo-imagery spanning 4 years (2010-2013) to reconstruct 3D models of coral reef areas and quantified both structural complexity at two spatial resolutions (2.5 and 25 cm) and benthic community composition to characterize changes after an unprecedented thermal anomaly on the west coast of Australia in 2011. Structural complexity increased at both resolutions in quadrats (4 m(2)) that bleached, but not those that did not bleach. Changes in complexity were driven by species-specific responses to warming, highlighting the importance of identifying small-scale dynamics to disentangle ecological responses to disturbance. We demonstrate an effective, repeatable method for quantifying the relationship among community composition, structural complexity and ocean warming, improving predictions of the response of marine ecosystems to environmental change. PMID:26679689

  11. Venus cloud structure and water vapor abundance from Mariner 10 observations

    NASA Technical Reports Server (NTRS)

    Taylor, F. W.

    1976-01-01

    Observations of the Venus atmosphere with the infrared radiometer on Mariner 10 have been analyzed by Taylor (1975) in terms of the vertical distribution of opacity at wavelengths near 11 microns and 45 microns in the thermal infrared. In this paper, we discuss models of the Venus atmosphere which are consistent with the inferred opacity structure. Either a two-layer cloud structure, or a single cloud deck overlaid by a layer containing approximately 40 precipitable microns of water vapor, would have the required limb-darkening characteristics at the wavelengths of observation.

  12. The structural diversity and promise of antiparasitic marine invertebrate-derived small molecules

    PubMed Central

    Watts, Katharine R; Tenney, Karen; Crews, Phillip

    2010-01-01

    This review focuses on six important parasitic diseases that adversely affect the health and lives of over one billion people worldwide. In light of the global human impact of these neglected tropical diseases (NTDs), several initiatives and campaigns have been mounted to eradicate these infections once and for all. Currently available therapeutics summarized herein are either ineffective and/or have severe and deleterious side effects. Resistant strains continue to emerge and there is an overall unmet and urgent need for new antiparasitic drugs. Marine-derived small molecules (MDSMs) from invertebrates comprise an extremely diverse and promising source of compounds from a wide variety of structural classes. New discoveries of marine natural product privileged structures and compound classes that are being made via natural product library screening using whole cell in vitro assays are highlighted. It is striking to note that for the first time in history the entire genomes of all six parasites have been sequenced and additional transcriptome and proteomic analyses are available. Furthermore, open and shared, publicly available databases of the genome sequences, compounds, screening assays, and druggable molecular targets are being used by the worldwide research community. A combined assessment of all of the above factors, especially of current discoveries in marine natural products, implies a brighter future with more effective, affordable, and benign antiparasitic therapeutics. PMID:20956079

  13. Case series of pectoralis major rupture requiring operative intervention sustained on the Royal Marines ‘Tarzan’ assault course

    PubMed Central

    Smith, Chris; Guyver, Paul Michael

    2015-01-01

    We present (with intra-operative imaging) four patients who sustained pectoralis major (PM) ruptures on the same piece of equipment of the ‘Tarzan’ assault course at the Commando Training Centre, Royal Marines (CTCRM). Recruits jump at running pace, carrying 21 lbs of equipment and a weapon (8 lbs) across a 6-feet gap onto a vertical cargo-net. The recruits punch horizontally through the net, before adducting their arm to catch themselves, and all weight, on their axilla. All patients presented with immediate pain and reduced function. Two had ruptures demonstrated on magnetic resonance imaging, one on an ultrasound scan and one via clinical examination. All four patients were found, at operation, to have sustained type IIIE injuries. All patients underwent PM repair using a unicortical button fixation and had an uneventful immediate postoperative course. Patient 1 left Royal Marines training after the injury (out of choice; not because of failure to rehabilitate). All other patients are under active rehabilitation, hoping to return to training. Review of 10 years of records at CTCRM reveal no documented PM rupture prior to our first case in October 2013. There has been no change to the obstacle or technique used and all patients deny the use of steroids. PMID:27582974

  14. Case series of pectoralis major rupture requiring operative intervention sustained on the Royal Marines 'Tarzan' assault course.

    PubMed

    Evans, Jonathan; Smith, Chris; Guyver, Paul Michael

    2015-07-01

    We present (with intra-operative imaging) four patients who sustained pectoralis major (PM) ruptures on the same piece of equipment of the 'Tarzan' assault course at the Commando Training Centre, Royal Marines (CTCRM). Recruits jump at running pace, carrying 21 lbs of equipment and a weapon (8 lbs) across a 6-feet gap onto a vertical cargo-net. The recruits punch horizontally through the net, before adducting their arm to catch themselves, and all weight, on their axilla. All patients presented with immediate pain and reduced function. Two had ruptures demonstrated on magnetic resonance imaging, one on an ultrasound scan and one via clinical examination. All four patients were found, at operation, to have sustained type IIIE injuries. All patients underwent PM repair using a unicortical button fixation and had an uneventful immediate postoperative course. Patient 1 left Royal Marines training after the injury (out of choice; not because of failure to rehabilitate). All other patients are under active rehabilitation, hoping to return to training. Review of 10 years of records at CTCRM reveal no documented PM rupture prior to our first case in October 2013. There has been no change to the obstacle or technique used and all patients deny the use of steroids.

  15. Superfund record of decision (EPA Region 4): Marine Corps Base, operable unit 5 (site 2), Camp Lejeune, NC, September 1994

    SciTech Connect

    Not Available

    1994-09-15

    The decision document presents the selected remedy for Operable Unit No. 5 (Site 2) at Marine Corps Base (MCB), Camp Lejeune, North Carolina. The selected remedy for Site 2, Institutional Controls/Long-Term Groundwater Monitoring, is the final action to be conducted at this site. A Time Critical Removal Action (TCRA) is planned to be completed prior to that of the selected remedy at the operable unit for the removal of pesticide-contaminated soils and sediment identified during the remedial investigation. The contaminated soils and sediment may present an adverse risk to human health and the environment, and are potential sources of groundwater contamination. The selected remedial action included in this ROD addresses the principal threats remaining (i.e., post-TCRA) at Site 2 by addressing groundwater contamination.

  16. Predicate argument structure frames for modeling information in operative notes.

    PubMed

    Wang, Yan; Pakhomov, Serguei; Melton, Genevieve B

    2013-01-01

    The rich information about surgical procedures contained in operative notes is a valuable data source for improving the clinical evidence base and clinical research. In this study, we propose a set of Predicate Argument Structure (PAS) frames for surgical action verbs to assist in the creation of an information extraction (IE) system to automatically extract details about the techniques, equipment, and operative steps from operative notes. We created PropBank style PAS frames for the 30 top surgical action verbs based on examination of randomly selected sample sentences from 3,000 Laparoscopic Cholecystectomy notes. To assess completeness of the PAS frames to represent usage of same action verbs, we evaluated the PAS frames created on sample sentences from operative notes of 6 other gastrointestinal surgical procedures. Our results showed that the PAS frames created with one type of surgery can successfully denote the usage of the same verbs in operative notes of broader surgical categories. PMID:23920664

  17. Operation of marine diesel engines on biogenic fuels: modification of emissions and resulting climate effects.

    PubMed

    Petzold, Andreas; Lauer, Peter; Fritsche, Uwe; Hasselbach, Jan; Lichtenstern, Michael; Schlager, Hans; Fleischer, Fritz

    2011-12-15

    The modification of emissions of climate-sensitive exhaust compounds such as CO(2), NO(x), hydrocarbons, and particulate matter from medium-speed marine diesel engines was studied for a set of fossil and biogenic fuels. Applied fossil fuels were the reference heavy fuel oil (HFO) and the low-sulfur marine gas oil (MGO); biogenic fuels were palm oil, soybean oil, sunflower oil, and animal fat. Greenhouse gas (GHG) emissions related to the production of biogenic fuels were treated by means of a fuel life cycle analysis which included land use changes associated with the growth of energy plants. Emissions of CO(2) and NO(x) per kWh were found to be similar for fossil fuels and biogenic fuels. PM mass emission was reduced to 10-15% of HFO emissions for all low-sulfur fuels including MGO as a fossil fuel. Black carbon emissions were reduced significantly to 13-30% of HFO. Changes in emissions were predominantly related to particulate sulfate, while differences between low-sulfur fossil fuels and low-sulfur biogenic fuels were of minor significance. GHG emissions from the biogenic fuel life cycle (FLC) depend crucially on energy plant production conditions and have the potential of shifting the overall GHG budget from positive to negative compared to fossil fuels.

  18. Maximality-Based Structural Operational Semantics for Petri Nets

    NASA Astrophysics Data System (ADS)

    Saīdouni, Djamel Eddine; Belala, Nabil; Bouneb, Messaouda

    2009-03-01

    The goal of this work is to exploit an implementable model, namely the maximality-based labeled transition system, which permits to express true-concurrency in a natural way without splitting actions on their start and end events. One can do this by giving a maximality-based structural operational semantics for the model of Place/Transition Petri nets in terms of maximality-based labeled transition systems structures.

  19. Microphysical structure of simulated marine stratocumulus: Effects of physical and numerical approximations

    SciTech Connect

    Stevens, B.; Cotton, W.R.; Feingold, G.

    1996-04-01

    Over the past decade or so the evolution and equilibria of persistent decks of stratocumulus climatologically clinging to the edge of summertime subtropical highs have been an issue of increased scientific inquiry. The particular interest in the microphysical structure of these clouds stems from a variety of hypotheses which suggest that anthropogenic influences or biogenic feedbacks may alter the structure of these clouds in a climatically significant manner. Most of these hypotheses are quite tentative, based as they are on simple formulations of boundary layer structures and interactions between drops and aerosols. This work is concerned with an assessment of the microphysical structure of marine stratocumulus as simulated by an LES-EM model.

  20. Synthesis and structure-activity relationship of cytotoxic marine cyclodepsipeptide IB-01212 analogues.

    PubMed

    Cruz, Luis J; Francesch, Andres; Cuevas, Carmen; Albericio, Fernando

    2007-07-01

    Several recently discovered marine products have remarkable in vitro and in vivo anticancer profiles against a wide range of tumor cell lines. Some of these compounds are currently in clinical trials. These compounds show complex structures and mechanisms of action of interest. Herein, we describe the preparation of a series of totally synthetic molecules that are structurally related to the natural marine product IB-01212 and evaluated them as antitumor agents. For this, total solid-phase syntheses of the products were performed in parallel by two distinct routes: linear synthesis and convergent synthesis. Structural modifications were introduced in several residue positions to afford 21 IB-01212 analogues for structure-relationship studies. An increase in the number of methyl groups in the macrocycle enhanced cytotoxic activity. Also, the replacement of an ester bond by an amide bond favored antitumor activity against several human cell lines. In addition, the L configuration analogues were more active against all the tumor cell lines than those containing the D configuration. A significant increase in the size and asymmetry of the macrocycle diminished biological activity with respect to that of IB-01212. These results are of great value for the discovery of new and more effective anticancer agents.

  1. Marine boundary layer structure as observed by A-train satellites

    DOE PAGES

    Luo, Tao; Wang, Zhien; Zhang, Damao; Chen, Bing

    2016-05-13

    The marine boundary layer (MBL) structure is important to the marine low cloud processes, and the exchange of heat, momentum, and moisture between oceans and the low atmosphere. This study examines the MBL structure over the eastern Pacific region and further explores the controlling factors of MBL structure over the global oceans with a new 4-year satellite-based data set. The MBL top (boundary layer height, BLH) and the mixing layer height (MLH) were identified using the MBL aerosol lidar backscattering from the CALIPSO (Cloud–Aerosol Lidar and Infrared Pathfinder Satellite Observations). Results showed that the MBL is generally decoupled with MLH ∕ BLHmore » ratio ranging from  ∼  0.5 to  ∼  0.8 over the eastern Pacific Ocean region. The MBL decoupling magnitude is mainly controlled by estimated inversion strength (EIS), which in turn controls the cloud top entrainment process. The systematic differences between drizzling and non-drizzling stratocumulus tops also show dependence on EIS. This may be related to the meso-scale circulations or gravity wave in the MBL. Further analysis indicates that the MBL shows a similar decoupled structure for clear-sky and cumulus-cloud-topped conditions, but is better mixed under stratiform cloud breakup and overcast conditions.« less

  2. Turbulence structure of the marine stable boundary layer over the Baltic Sea

    SciTech Connect

    Smedman, A.S.; Hoegstroem, U.

    1994-12-31

    For more than half of the year the land surfaces surrounding the Baltic Sea is warmer than the sea surface, and the marine boundary layer over the Baltic is stable. Observations, at various sites in the Baltic Sea area during the last decade. also indicate frequent occurrence of low-level jets at the top of the stable boundary layer. In many cases the marine jet can be considered as an analogy in space to the evolution of the nocturnal jet with time. The frictional decoupling occurs when warm air over the land is flowing out over the sea. Data from two areas together with model simulations are used in this study to characterize turbulence structure in the marine boundary layer. The measurements include profiles of wind and temperature on towers situated at two isolated islands, together with turbulence recordings and aircraft measurements. Also wave height and water surface temperature have been measured. The model simulations are performed with a second-order closure model.

  3. Glycosaminoglycans analogs from marine invertebrates: structure, biological effects, and potential as new therapeutics

    PubMed Central

    Pavão, Mauro S. G.

    2014-01-01

    In this review, several glycosaminoglycan analogs obtained from different marine invertebrate are reported. The structure, biological activity and mechanism of action of these unique molecules are detailed reviewed and exemplified by experiments in vitro and in vivo. Among the glycans studied are low-sulfated heparin-like polymers from ascidians, containing significant anticoagulant activity and no bleeding effect; dermatan sulfates with significant neurite outgrowth promoting activity and anti-P-selectin from ascidians, and a unique fucosylated chondroitin sulfate from sea cucumbers, possessing anticoagulant activity after oral administration and high anti P- and L-selectin activities. The therapeutic value and safety of these invertebrate glycans have been extensively proved by several experimental animal models of diseases, including thrombosis, inflammation and metastasis. These invertebrate glycans can be obtained in high concentrations from marine organisms that have been used as a food source for decades, and usually obtained from marine farms in sufficient quantities to be used as starting material for new therapeutics. PMID:25309878

  4. Structural and Operational Complexity of the Geobacter Sulfurreducens Genome

    SciTech Connect

    Qiu, Yu; Cho, Byung-Kwan; Park, Young S.; Lovley, Derek R.; Palsson, Bernhard O.; Zengler, Karsten

    2010-06-30

    Prokaryotic genomes can be annotated based on their structural, operational, and functional properties. These annotations provide the pivotal scaffold for understanding cellular functions on a genome-scale, such as metabolism and transcriptional regulation. Here, we describe a systems approach to simultaneously determine the structural and operational annotation of the Geobacter sulfurreducens genome. Integration of proteomics, transcriptomics, RNA polymerase, and sigma factor-binding information with deep-sequencing-based analysis of primary 59-end transcripts allowed for a most precise annotation. The structural annotation is comprised of numerous previously undetected genes, noncoding RNAs, prevalent leaderless mRNA transcripts, and antisense transcripts. When compared with other prokaryotes, we found that the number of antisense transcripts reversely correlated with genome size. The operational annotation consists of 1453 operons, 22% of which have multiple transcription start sites that use different RNA polymerase holoenzymes. Several operons with multiple transcription start sites encoded genes with essential functions, giving insight into the regulatory complexity of the genome. The experimentally determined structural and operational annotations can be combined with functional annotation, yielding a new three-level annotation that greatly expands our understanding of prokaryotic genomes.

  5. Structural and operational complexity of the Geobacter sulfurreducens genome

    PubMed Central

    Qiu, Yu; Cho, Byung-Kwan; Park, Young Seoub; Lovley, Derek; Palsson, Bernhard Ø.; Zengler, Karsten

    2010-01-01

    Prokaryotic genomes can be annotated based on their structural, operational, and functional properties. These annotations provide the pivotal scaffold for understanding cellular functions on a genome-scale, such as metabolism and transcriptional regulation. Here, we describe a systems approach to simultaneously determine the structural and operational annotation of the Geobacter sulfurreducens genome. Integration of proteomics, transcriptomics, RNA polymerase, and sigma factor-binding information with deep-sequencing-based analysis of primary 5′-end transcripts allowed for a most precise annotation. The structural annotation is comprised of numerous previously undetected genes, noncoding RNAs, prevalent leaderless mRNA transcripts, and antisense transcripts. When compared with other prokaryotes, we found that the number of antisense transcripts reversely correlated with genome size. The operational annotation consists of 1453 operons, 22% of which have multiple transcription start sites that use different RNA polymerase holoenzymes. Several operons with multiple transcription start sites encoded genes with essential functions, giving insight into the regulatory complexity of the genome. The experimentally determined structural and operational annotations can be combined with functional annotation, yielding a new three-level annotation that greatly expands our understanding of prokaryotic genomes. PMID:20592237

  6. The vertical turbulence structure of the coastal marine atmospheric boundary layer

    SciTech Connect

    Tjernstroem, M.; Smedman, A.S. )

    1993-03-15

    The vertical turbulence structure in the marine atmosphere along a shoreline has been investigated using data from tower and aircraft measurements performed along the Baltic coast in the southeast of Sweden. Two properties make the Baltic Sea particularly interesting. It is surrounded by land in all directions within moderate advection distances, and it features a significant annual lag in sea surface temperature as compared with inland surface temperature. The present data were collected mostly during spring or early summer, when the water is cool, i.e., with a stably or neutrally stratified marine boundary layer usually capped by an inversion. Substantial daytime heating over the land area results in a considerable horizontal thermal contrast. Measurements were made on a small island, on a tower with a good sea fetch, and with an airborne instrument package. The profile data from the aircraft is from 25 slant soundings performed in connection to low level boundary layer flights. The results from the profiles are extracted through filtering techniques on individual time (space) series (individual profiles), applying different normalization and finally averaging over all or over groups of profiles. The land-based data are from a low tower situated on the shoreline of a small island with a wide sector of unobstructed sea fetch. Several factors are found that add to the apparent complexity of the coastal marine environment: the state of the sea appears to have a major impact on the turbulence structure of the surface layer, jet-shaped wind speed profiles were very common at the top of the boundary layer (in about 50% of the cases) and distinct layers with increased turbulence were frequently found well above the boundary layer (in about 80% of the cases). The present paper will concentrate on a description of the experiment, the analysis methods, and a general description of the boundary layer turbulence structure over the Baltic Sea. 40 refs., 16 figs., 2 tabs.

  7. Waves of 3D marine structures slamming at different initial poses in complex wind-wave-flow environments

    NASA Astrophysics Data System (ADS)

    Zhu, Liang-sheng; Yu, Long-fei

    2016-10-01

    Aimed at the hydrodynamic response for marine structures slamming into water, based on the mechanism analysis to the slamming process, and by combining 3D N-S equation and k- ɛ turbulent kinetic equation with structure fully 6DOF motion equation, a mathematical model for the wind-fluid-solid interaction is established in 3D marine structure slamming wave at free poses and wind-wave-flow complex environments. Compared with the results of physical model test, the numerical results from the slamming wave well correspond with the experimental results. Through the mathematical model, the wave-making issue of 3D marine structure at initial pose falls into water in different complex wind, wave and flow environments is investigated. The research results show that various kinds of natural factors and structure initial poses have different influence on the slamming wave, and there is an obvious rule in this process.

  8. Anthraquinones and Derivatives from Marine-Derived Fungi: Structural Diversity and Selected Biological Activities

    PubMed Central

    Fouillaud, Mireille; Venkatachalam, Mekala; Girard-Valenciennes, Emmanuelle; Caro, Yanis; Dufossé, Laurent

    2016-01-01

    Anthraquinones and their derivatives constitute a large group of quinoid compounds with about 700 molecules described. They are widespread in fungi and their chemical diversity and biological activities recently attracted attention of industries in such fields as pharmaceuticals, clothes dyeing, and food colorants. Their positive and/or negative effect(s) due to the 9,10-anthracenedione structure and its substituents are still not clearly understood and their potential roles or effects on human health are today strongly discussed among scientists. As marine microorganisms recently appeared as producers of an astonishing variety of structurally unique secondary metabolites, they may represent a promising resource for identifying new candidates for therapeutic drugs or daily additives. Within this review, we investigate the present knowledge about the anthraquinones and derivatives listed to date from marine-derived filamentous fungi′s productions. This overview highlights the molecules which have been identified in microorganisms for the first time. The structures and colors of the anthraquinoid compounds come along with the known roles of some molecules in the life of the organisms. Some specific biological activities are also described. This may help to open doors towards innovative natural substances. PMID:27023571

  9. Environmental degradation of composites for marine structures: new materials and new applications.

    PubMed

    Davies, Peter

    2016-07-13

    This paper describes the influence of seawater ageing on composites used in a range of marine structures, from boats to tidal turbines. Accounting for environmental degradation is an essential element in the multi-scale modelling of composite materials but it requires reliable test data input. The traditional approach to account for ageing effects, based on testing samples after immersion for different periods, is evolving towards coupled studies involving strong interactions between water diffusion and mechanical loading. These can provide a more realistic estimation of long-term behaviour but still require some form of acceleration if useful data, for 20 year lifetimes or more, are to be obtained in a reasonable time. In order to validate extrapolations from short to long times, it is essential to understand the degradation mechanisms, so both physico-chemical and mechanical test data are required. Examples of results from some current studies on more environmentally friendly materials including bio-sourced composites will be described first. Then a case study for renewable marine energy applications will be discussed. In both cases, studies were performed first on coupons at the material level, then during structural testing and analysis of large components, in order to evaluate their long-term behaviour. This article is part of the themed issue 'Multiscale modelling of the structural integrity of composite materials'. PMID:27242304

  10. Anthraquinones and Derivatives from Marine-Derived Fungi: Structural Diversity and Selected Biological Activities.

    PubMed

    Fouillaud, Mireille; Venkatachalam, Mekala; Girard-Valenciennes, Emmanuelle; Caro, Yanis; Dufossé, Laurent

    2016-04-01

    Anthraquinones and their derivatives constitute a large group of quinoid compounds with about 700 molecules described. They are widespread in fungi and their chemical diversity and biological activities recently attracted attention of industries in such fields as pharmaceuticals, clothes dyeing, and food colorants. Their positive and/or negative effect(s) due to the 9,10-anthracenedione structure and its substituents are still not clearly understood and their potential roles or effects on human health are today strongly discussed among scientists. As marine microorganisms recently appeared as producers of an astonishing variety of structurally unique secondary metabolites, they may represent a promising resource for identifying new candidates for therapeutic drugs or daily additives. Within this review, we investigate the present knowledge about the anthraquinones and derivatives listed to date from marine-derived filamentous fungi's productions. This overview highlights the molecules which have been identified in microorganisms for the first time. The structures and colors of the anthraquinoid compounds come along with the known roles of some molecules in the life of the organisms. Some specific biological activities are also described. This may help to open doors towards innovative natural substances. PMID:27023571

  11. Environmental degradation of composites for marine structures: new materials and new applications.

    PubMed

    Davies, Peter

    2016-07-13

    This paper describes the influence of seawater ageing on composites used in a range of marine structures, from boats to tidal turbines. Accounting for environmental degradation is an essential element in the multi-scale modelling of composite materials but it requires reliable test data input. The traditional approach to account for ageing effects, based on testing samples after immersion for different periods, is evolving towards coupled studies involving strong interactions between water diffusion and mechanical loading. These can provide a more realistic estimation of long-term behaviour but still require some form of acceleration if useful data, for 20 year lifetimes or more, are to be obtained in a reasonable time. In order to validate extrapolations from short to long times, it is essential to understand the degradation mechanisms, so both physico-chemical and mechanical test data are required. Examples of results from some current studies on more environmentally friendly materials including bio-sourced composites will be described first. Then a case study for renewable marine energy applications will be discussed. In both cases, studies were performed first on coupons at the material level, then during structural testing and analysis of large components, in order to evaluate their long-term behaviour. This article is part of the themed issue 'Multiscale modelling of the structural integrity of composite materials'.

  12. The response characteristics of long cylindrical marine structures under different excitations

    SciTech Connect

    Park, H.I.

    1994-12-31

    Long cylindrical marine structures such as risers, TLP tendons, ocean pipes are subjected to several kinds of excitations of forcing, parametric, combined, self-excited etc. In this work, the response characteristics of the slender marine structures is investigated for the first three excitations. The governing partial differential equation of lateral motion of a slender structure is reduced to a non-linear differential equation with an integrand. The non-linear equation is solved numerically. The time histories of response amplitudes of the three excitations are obtained for actual TLP tethers: Hutton, Jolliet and Snoore TLPs. The response of combined excitation is most dominant for all three tethers. The total displacement is largest in the case of the Jolliet tether which corresponds to the second instability region. The response curves of combined excitation are also obtained. When the strength of forcing excitation is increased, the response amplitude of combined excitation evenly increases. However, when the strength of parametric excitation is increased, the response amplitude of combined excitation increases strongly and slightly in the even and odd numbers of instability regions, respectively.

  13. Superfund record of decision (EPA Region 9): Yuma Marine Corps Air Station, Operable Unit 2, Yuma, AZ, December 2, 1997

    SciTech Connect

    1998-10-01

    This Record of Decision (ROD) for Operable Unit (OU2) documents the remedial action plan for OU2 at Marine Corps Air Station (MCAS), Yuma, Arizona. On the basis of the data collected at the OU2 sites, no further action is necessary for 12 of the 18 CAOCs included in OU2, because these sites do not pose a threat to human health or the environment. However, remedial action is required to protect human health and comply with regulatory requirements at three of the CAOCs in OU2 because of the presence of ACM. Under this alternative, ACM fragment visible on soil surfaces would be collected manually. Collection would include removing approximately the upper inch of soil beneath the ACM to reduce the potential for asbestos fibers remaining behind in the soil. The ACM and soils would be stockpiled, manifested, loaded, transported, and disposed of at a permitted facility.

  14. Current Methods for Meteorological and Marine Forecasting for the Assistance of Navigation and Shipping Operations

    NASA Astrophysics Data System (ADS)

    Del Prete, R.; Pezzoli, A.; Pezzoli, G.

    The objective of this paper is to illustrate a methodology for the enhancement of meteorological marine forecasts tailored to the needs of navigation. The study consists of two parts: (1) Theoretical background. Introduction to numerical models for weather forecasting used by meteorological centres. A review of the most reliable equations for prediction of intensity and direction of wind and sea state. In particular, reference is made to the tables for wind forecasting developed by R. Mayençon and A. Pezzoli and the equations for prediction of sea state obtained by K. Haselman and D. J. T. Carter in light of the JONSWAP experiment. (2) Practical application. Application of the methodology to a real-world example: a weather forecast elaborated by the Meteohydrological Laboratory at Dipartimento d'Idraulica Trasporti ed Infrastrutture Civili (DITIC) of the Polytechnic of Turin. The forecast was requested by the Consorzio Prada Challenge 2000 as a meteorological support for the training they held in the Tyrrhenian Sea for the next America's Cup series.

  15. Fine-scale population genetic structure of Zhikong scallop (Chlamys farreri): do local marine currents drive geographical differentiation?

    PubMed

    Zhan, Aibin; Hu, Jingjie; Hu, Xiaoli; Zhou, Zunchun; Hui, Min; Wang, Shi; Peng, Wei; Wang, Mingling; Bao, Zhenmin

    2009-01-01

    Marine scallops, with extended planktonic larval stages which can potentially disperse over large distances when advected by marine currents, are expected to possess low geographical differentiation. However, the sessile lifestyle as adult tends to form discrete "sea beds" with unique population dynamics and structure. The narrow distribution of Zhikong scallop (Chlamys farreri), its long planktonic larval stage, and the extremely hydrographic complexity in its distribution range provide an interesting case to elucidate the impact of marine currents on geographical differentiation for marine bivalves at a fine geographical scale. In this study, we analyzed genetic variation at nine microsatellite DNA loci in six locations throughout the distribution of Zhikong scallop in the Northern China. Very high genetic diversity was present in all six populations. Two populations sampled from the same marine gyre had no detectable genetic differentiation (F (ST) = 0.0013); however, the remaining four populations collected from different marine gyres or separated by strong marine currents showed low but significant genetic differentiation (F (ST) range 0.0184-0.0602). Genetic differentiation was further analyzed using the Monmonier algorithm to identify genetic barriers and using the assignment test conducted by software GeneClass2 to ascertain population membership of individuals. The genetic barriers fitting the orientation of marine gyres/currents were clearly identified, and the individual assignment analysis indicated that 95.6% of specimens were correctly allocated to one of the six populations sampled. The results support the hypothesis that significant population structure is present in Zhikong scallop at a fine geographical scale, and marine currents can be responsible for the genetic differentiation.

  16. An extreme climatic event alters marine ecosystem structure in a global biodiversity hotspot

    NASA Astrophysics Data System (ADS)

    Wernberg, Thomas; Smale, Dan A.; Tuya, Fernando; Thomsen, Mads S.; Langlois, Timothy J.; de Bettignies, Thibaut; Bennett, Scott; Rousseaux, Cecile S.

    2013-01-01

    Extreme climatic events, such as heat waves, are predicted to increase in frequency and magnitude as a consequence of global warming but their ecological effects are poorly understood, particularly in marine ecosystems. In early 2011, the marine ecosystems along the west coast of Australia--a global hotspot of biodiversity and endemism--experienced the highest-magnitude warming event on record. Sea temperatures soared to unprecedented levels and warming anomalies of 2-4°C persisted for more than ten weeks along >2,000km of coastline. We show that biodiversity patterns of temperate seaweeds, sessile invertebrates and demersal fish were significantly different after the warming event, which led to a reduction in the abundance of habitat-forming seaweeds and a subsequent shift in community structure towards a depauperate state and a tropicalization of fish communities. We conclude that extreme climatic events are key drivers of biodiversity patterns and that the frequency and intensity of such episodes have major implications for predictive models of species distribution and ecosystem structure, which are largely based on gradual warming trends.

  17. On the vertical structure and spectral characteristics of the marine Low-Level Jet

    NASA Astrophysics Data System (ADS)

    Helmis, C. G.; Sgouros, G.; Wang, Q.

    2015-01-01

    The aim of this work is the study of the vertical structure and the spectral characteristics of the marine Low Level Jets (LLJs) which are associated with frontal events. The analyzed data are based on remote sensing (sodar) and in-situ instrumentation measurements, performed during summer 2003, in the frame of the Coupled Boundary Layers Air-Sea Transfer Experiment in Low Winds (CBLAST-Low), at Nantucket Island, MA, U.S.A. The study of the vertical structure of the lower marine Atmospheric Boundary Layer (MABL), during a ten day period, has shown that the first 100 to 200 m, is characterized by strongly stable atmospheric conditions which are modified to slightly stable or almost neutral at higher levels. The frequent development of LLJs was also observed and was associated with frontal events, depending on the meteorological conditions. In order to understand the influence of the different physical processes and to study the vertical distribution of the wind intensity variations at the various time scales of interest, the Hilbert-Huang Transform (HHT) algorithm was applied to the time series of the wind data from the sodar, at different levels. Results are presented and discussed for certain LLJ cases, where the observed LLJs were persistent for several hours or days while the analysis of the wind speed data showed high amplitude variations corresponding to contributions not only from inertial but also from diurnal and meso-scale motions.

  18. 75 FR 2490 - Taking and Importing Marine Mammals; Naval Explosive Ordnance Disposal School Training Operations...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-01-15

    ... Explosive Ordnance Disposal School Training Operations Activities at Eglin Air Force Base, FL AGENCY... 96\\th\\ Air Base Wing (U.S. Air Force), Eglin Air Force Base (Eglin AFB) for authorization to take... Authorization (IHA) for the same activity in 2005 (70 FR 51341; August 30, 2005), 2006 (70 FR 60693; October...

  19. 77 FR 16718 - Taking and Importing Marine Mammals; Naval Explosive Ordnance Disposal School Training Operations...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-03-22

    ... receipt (75 FR 2490) in the Federal Register for the U.S. Air Force's NEODS training operations and... 1, 2010, NMFS published a proposed rule (75 FR 60694) in the Federal Register to authorize the take... the Zones of Influence (ZOI) and associated takes on revised thresholds for Level A and Level...

  20. The structure of the clouds distributed operating system

    NASA Technical Reports Server (NTRS)

    Dasgupta, Partha; Leblanc, Richard J., Jr.

    1989-01-01

    A novel system architecture, based on the object model, is the central structuring concept used in the Clouds distributed operating system. This architecture makes Clouds attractive over a wide class of machines and environments. Clouds is a native operating system, designed and implemented at Georgia Tech. and runs on a set of generated purpose computers connected via a local area network. The system architecture of Clouds is composed of a system-wide global set of persistent (long-lived) virtual address spaces, called objects that contain persistent data and code. The object concept is implemented at the operating system level, thus presenting a single level storage view to the user. Lightweight treads carry computational activity through the code stored in the objects. The persistent objects and threads gives rise to a programming environment composed of shared permanent memory, dispensing with the need for hardware-derived concepts such as the file systems and message systems. Though the hardware may be distributed and may have disks and networks, the Clouds provides the applications with a logically centralized system, based on a shared, structured, single level store. The current design of Clouds uses a minimalist philosophy with respect to both the kernel and the operating system. That is, the kernel and the operating system support a bare minimum of functionality. Clouds also adheres to the concept of separation of policy and mechanism. Most low-level operating system services are implemented above the kernel and most high level services are implemented at the user level. From the measured performance of using the kernel mechanisms, we are able to demonstrate that efficient implementations are feasible for the object model on commercially available hardware. Clouds provides a rich environment for conducting research in distributed systems. Some of the topics addressed in this paper include distributed programming environments, consistency of persistent data

  1. Exploring marine resources for bioactive compounds.

    PubMed

    Kiuru, Paula; DʼAuria, M Valeria; Muller, Christian D; Tammela, Päivi; Vuorela, Heikki; Yli-Kauhaluoma, Jari

    2014-09-01

    Biodiversity in the seas is only partly explored, although marine organisms are excellent sources for many industrial products. Through close co-operation between industrial and academic partners, it is possible to successfully collect, isolate and classify marine organisms, such as bacteria, fungi, micro- and macroalgae, cyanobacteria, and marine invertebrates from the oceans and seas globally. Extracts and purified compounds of these organisms can be studied for several therapeutically and industrially significant biological activities, including anticancer, anti-inflammatory, antiviral, antibacterial, and anticoagulant activities by applying a wide variety of screening tools, as well as for ion channel/receptor modulation and plant growth regulation. Chromatographic isolation of bioactive compounds will be followed by structural determination. Sustainable cultivation methods for promising organisms and biotechnological processes for selected compounds can be developed, as well as biosensors for monitoring the target compounds. The (semi)synthetic modification of marine-based bioactive compounds produces their new derivatives, structural analogs and mimetics that could serve as hit or lead compounds and be used to expand compound libraries based on marine natural products. The research innovations can be targeted for industrial product development in order to improve the growth and productivity of marine biotechnology. Marine research aims at a better understanding of environmentally conscious sourcing of marine biotechnology products and increased public awareness of marine biodiversity. Marine research is expected to offer novel marine-based lead compounds for industries and strengthen their product portfolios related to pharmaceutical, nutraceutical, cosmetic, agrochemical, food processing, material and biosensor applications. PMID:25203732

  2. Horizontal Structure of Dynamical Instability at Marine Stratocumulus Cloud Top Revealed in Polarized Light

    NASA Astrophysics Data System (ADS)

    Davis, A. B.; Diner, D. J.; Matheou, G.; Teixeira, J.; Qu, Z.; Emde, C.

    2014-12-01

    Marine stratocumulus (Sc) layers cover vast regions and, due to their high opacities, they play a major role in the Earth's solar radiation budget. They also have remarkably flat upper boundaries due to strong gradients in relative humidity at the top of the boundary layer (BL). However, those very gradients are unstable at scales as small as meters depending on fluctuations of temperature and liquid water content, hence radiative cooling in the thermal IR. The ensuing turbulent mixing of moist and dry air at cloud top due to such small-scale dynamical processes is not benign. It controls the structure of the entire marine BL, hence the Sc life-cycle, hence large-scale subsidence, hence global circulation and, ultimately, climate. This physical connection across many orders of magnitude in scale makes the prognosis and microphysical parameterization of marine Sc particularly challenging for climate modelers. It also makes these clouds high-value targets for remote sensing, both space-based and airborne. Airborne sensors can easily achieve the resolution required to image cloud-top instabilities but natural sunlight is so highly scattered that the finest spatial features are all but erased by the "radiative smoothing" process. However, we will show that JPL's Airborne Multi-angle Spectro-Polarimetric Imager (AirMSPI), which flies on NASA's ER-2 aircraft at 20 km altitude, reveals in near-backscattered polarized light the previously unseen horizontal structure of the marine Sc cloud top physics and dynamics at 10 m resolution across a 10 km swath. It appears as a complex network of meandering filaments. Large-Eddy Simulation modeling of these oceanic clouds with bin microphysics and state-of-the-art polarized 3D radiative transfer have been harnessed to model AirMSPI observations of the first three Stokes vector components in the relevant observational geometry for a 2.5x2.5 km^2 region. Synthetic imagery obtained at JPL's High-Performance Computing facility shows

  3. The nested structure of marine cleaning symbiosis: is it like flowers and bees?

    PubMed

    Guimarães, Paulo R; Sazima, Cristina; dos Reis, Sérgio Furtado; Sazima, Ivan

    2007-02-22

    In a given area, plant-animal mutualistic interactions form complex networks that often display nestedness, a particular type of asymmetry in interactions. Simple ecological and evolutionary factors have been hypothesized to lead to nested networks. Therefore, nestedness is expected to occur in other types of mutualisms as well. We tested the above prediction with the network structure of interactions in cleaning symbiosis at three reef assemblages. In this type of interaction, shrimps and fishes forage on ectoparasites and injured tissues from the body surface of fish species. Cleaning networks show strong patterns of nestedness. In fact, after controlling for species richness, cleaning networks are even more nested than plant-animal mutualisms. Our results support the notion that mutualisms evolve to a predictable community-level structure, be it in terrestrial or marine communities.

  4. Strong population genetic structure in a broadcast-spawning Antarctic marine invertebrate.

    PubMed

    Hoffman, Joseph I; Peck, Lloyd S; Linse, Katrin; Clarke, Andrew

    2011-01-01

    Although studies of population genetic structure are commonplace, a strong bias exists toward species from low latitudes and with relatively poor dispersal capabilities. Consequently, we used 280 amplified fragment length polymorphism bands to explore patterns of genetic differentiation among 8 populations of a high latitude broadcast-spawning marine mollusc, the Antarctic limpet Nacella concinna. Over 300 individuals were sampled along a latitudinal gradient spanning the Antarctic Peninsula from Adelaide Island to King George Island (67°-62°S), then to Signy Island (60°S) and South Georgia (54°S). Populations from the Antarctic Peninsula exhibited little genetic structure but were themselves strongly differentiated from both Signy and South Georgia. This finding was analytically highly robust and implies the presence of significant oceanographic barriers to gene flow in a species long regarded as a classic example of a widely dispersing broadcast spawner.

  5. Molecular tools for investigating microbial community structure and function in oxygen-deficient marine waters.

    PubMed

    Hawley, Alyse K; Kheirandish, Sam; Mueller, Andreas; Leung, Hilary T C; Norbeck, Angela D; Brewer, Heather M; Pasa-Tolic, Ljiljana; Hallam, Steven J

    2013-01-01

    Water column oxygen (O2)-deficiency shapes food-web structure by progressively directing nutrients and energy away from higher trophic levels into microbial community metabolism resulting in fixed nitrogen loss and greenhouse gas production. Although respiratory O2 consumption during organic matter degradation is a natural outcome of a productive surface ocean, global-warming-induced stratification intensifies this process leading to oxygen minimum zone (OMZ) expansion. Here, we describe useful tools for detection and quantification of potential key microbial players and processes in OMZ community metabolism including quantitative polymerase chain reaction primers targeting Marine Group I Thaumarchaeota, SUP05, Arctic96BD-19, and SAR324 small-subunit ribosomal RNA genes and protein extraction methods from OMZ waters compatible with high-resolution mass spectrometry for profiling microbial community structure and functional dynamics.

  6. Human-Mediated Marine Dispersal Influences the Population Structure of Aedes aegypti in the Philippine Archipelago

    PubMed Central

    Fonzi, Eugenio; Higa, Yukiko; Bertuso, Arlene G.; Futami, Kyoko; Minakawa, Noboru

    2015-01-01

    Background Dengue virus (DENV) is an extraordinary health burden on global scale, but still lacks effective vaccine. The Philippines is endemic for dengue fever, but massive employment of insecticides favored the development of resistance mutations in its major vector, Aedes aegypti. Alternative vector control strategies consist in releasing artificially modified mosquitos in the wild, but knowledge on their dispersal ability is necessary for a successful implementation. Despite being documented that Ae. aegypti can be passively transported for long distances, no study to date has been aimed at understanding whether human marine transportation can substantially shape the migration patterns of this mosquito. With thousands of islands connected by a dense network of ships, the Philippines is an ideal environment to fill this knowledge gap. Methodology/principal findings Larvae of Ae. aegypti from 15 seaports in seven major islands of central-western Philippines were collected and genotyped at seven microsatellite loci. Low genetic structure and considerable gene flow was found in the area. Univariate and multivariate regression analyses suggested that anthropic factors (specifically the amount of processed cargo and human population density) can explain the observed population structure, while geographical distance was not correlated. Interestingly, cargo shipments seem to be more efficient than passenger ships in transporting Ae. aegypti. Bayesian clustering confirmed that Ae. aegypti from busy ports are more genetically similar, while populations from idle ports are relatively structured, regardless of the geographical distance that separates them. Conclusions/significance The results confirmed the pivotal role of marine human-mediated long-range dispersal in determining the population structure of Ae. aegypti. Hopefully corroborated by further research, the present findings could assist the design of more effective vector control strategies. PMID:26039311

  7. Strong population structure in the marine sponge Crambe crambe (Poecilosclerida) as revealed by microsatellite markers.

    PubMed

    Duran, S; Pascual, M; Estoup, A; Turon, X

    2004-03-01

    Different categories of molecular markers have been used so far to study the population structure of sponges. However, these markers often did not have the resolution power to address precisely questions on structuring processes, especially at the intrapopulational level. In this study we show that microsatellites fulfil these expectations, allowing a fine description of population structure at different geographical scales in the marine sponge Crambe crambe. Specimens were collected in 11 locations, representing most of the Atlanto-Mediterranean range of the species, and were analysed at six loci. As expected for a sessile invertebrate with lecitotrophic larvae, high levels of between-population structure were found (FST = 0.18) and a significant isolation-by-distance pattern was observed. A strong genetic structure was also found within sampled sites (FIS = 0.21) that may be explained by several factors including inbreeding, selfing and the Wahlund effect. In spite of a sampling design planned to avoid the sampling of clones, genotypically identical individuals for the six loci were found in some locations. The significance of these potential clones is discussed and their effect on the observed pattern of population structure assessed. Patterns of allelic distribution within populations suggest the possibility of a recent colonization of the Atlantic range from the Mediterranean Sea.

  8. Genus age, provincial area and the taxonomic structure of marine faunas

    PubMed Central

    Harnik, Paul G.; Jablonski, David; Krug, Andrew Z.; Valentine, James W.

    2010-01-01

    Species are unevenly distributed among genera within clades and regions, with most genera species-poor and few species-rich. At regional scales, this structure to taxonomic diversity is generated via speciation, extinction and geographical range dynamics. Here, we use a global database of extant marine bivalves to characterize the taxonomic structure of climate zones and provinces. Our analyses reveal a general, Zipf–Mandelbrot form to the distribution of species among genera, with faunas from similar climate zones exhibiting similar taxonomic structure. Provinces that contain older taxa and/or encompass larger areas are expected to be more species-rich. Although both median genus age and provincial area correlate with measures of taxonomic structure, these relationships are interdependent, nonlinear and driven primarily by contrasts between tropical and extra-tropical faunas. Provincial area and taxonomic structure are largely decoupled within climate zones. Counter to the expectation that genus age and species richness should positively covary, diverse and highly structured provincial faunas are dominated by young genera. The marked differences between tropical and temperate faunas suggest strong spatial variation in evolutionary rates and invasion frequencies. Such variation contradicts biogeographic models that scale taxonomic diversity to geographical area. PMID:20534619

  9. Genus age, provincial area and the taxonomic structure of marine faunas.

    PubMed

    Harnik, Paul G; Jablonski, David; Krug, Andrew Z; Valentine, James W

    2010-11-22

    Species are unevenly distributed among genera within clades and regions, with most genera species-poor and few species-rich. At regional scales, this structure to taxonomic diversity is generated via speciation, extinction and geographical range dynamics. Here, we use a global database of extant marine bivalves to characterize the taxonomic structure of climate zones and provinces. Our analyses reveal a general, Zipf-Mandelbrot form to the distribution of species among genera, with faunas from similar climate zones exhibiting similar taxonomic structure. Provinces that contain older taxa and/or encompass larger areas are expected to be more species-rich. Although both median genus age and provincial area correlate with measures of taxonomic structure, these relationships are interdependent, nonlinear and driven primarily by contrasts between tropical and extra-tropical faunas. Provincial area and taxonomic structure are largely decoupled within climate zones. Counter to the expectation that genus age and species richness should positively covary, diverse and highly structured provincial faunas are dominated by young genera. The marked differences between tropical and temperate faunas suggest strong spatial variation in evolutionary rates and invasion frequencies. Such variation contradicts biogeographic models that scale taxonomic diversity to geographical area. PMID:20534619

  10. Clouds, Precipitation, and Marine Boundary Layer Structure during the MAGIC Field Campaign

    SciTech Connect

    Zhou, Xiaoli; Kollias, Pavlos; Lewis, Ernie R.

    2015-03-01

    The recent ship-based MAGIC (Marine ARM GCSS Pacific Cross-Section Intercomparison (GPCI) Investigation of Clouds) field campaign with the marine-capable Second ARM Mobile Facility (AMF2) deployed on the Horizon Lines cargo container M/V Spirit provided nearly 200 days of intraseasonal high-resolution observations of clouds, precipitation, and marine boundary layer (MBL) structure on multiple legs between Los Angeles, California, and Honolulu, Hawaii. During the deployment, MBL clouds exhibited a much higher frequency of occurrence than other cloud types and occurred more often in the warm season than in the cold season. MBL clouds demonstrated a propensity to produce precipitation, which often evaporated before reaching the ocean surface. The formation of stratocumulus is strongly correlated to a shallow MBL with a strong inversion and a weak transition, while cumulus formation is associated with a much weaker inversion and stronger transition. The estimated inversion strength is shown to depend seasonally on the potential temperature at 700 hPa. The location of the commencement of systematic MBL decoupling always occurred eastward of the locations of cloud breakup, and the systematic decoupling showed a strong moisture stratification. The entrainment of the dry warm air above the inversion appears to be the dominant factor triggering the systematic decoupling, while surface latent heat flux, precipitation, and diurnal circulation did not play major roles. MBL clouds broke up over a short spatial region due to the changes in the synoptic conditions, implying that in real atmospheric conditions the MBL clouds do not have enough time to evolve as in the idealized models. (auth)

  11. Clouds, Precipitation, and Marine Boundary Layer Structure during the MAGIC Field Campaign

    DOE PAGES

    Zhou, Xiaoli; Kollias, Pavlos; Lewis, Ernie R.

    2015-03-01

    The recent ship-based MAGIC (Marine ARM GCSS Pacific Cross-Section Intercomparison (GPCI) Investigation of Clouds) field campaign with the marine-capable Second ARM Mobile Facility (AMF2) deployed on the Horizon Lines cargo container M/V Spirit provided nearly 200 days of intraseasonal high-resolution observations of clouds, precipitation, and marine boundary layer (MBL) structure on multiple legs between Los Angeles, California, and Honolulu, Hawaii. During the deployment, MBL clouds exhibited a much higher frequency of occurrence than other cloud types and occurred more often in the warm season than in the cold season. MBL clouds demonstrated a propensity to produce precipitation, which often evaporatedmore » before reaching the ocean surface. The formation of stratocumulus is strongly correlated to a shallow MBL with a strong inversion and a weak transition, while cumulus formation is associated with a much weaker inversion and stronger transition. The estimated inversion strength is shown to depend seasonally on the potential temperature at 700 hPa. The location of the commencement of systematic MBL decoupling always occurred eastward of the locations of cloud breakup, and the systematic decoupling showed a strong moisture stratification. The entrainment of the dry warm air above the inversion appears to be the dominant factor triggering the systematic decoupling, while surface latent heat flux, precipitation, and diurnal circulation did not play major roles. MBL clouds broke up over a short spatial region due to the changes in the synoptic conditions, implying that in real atmospheric conditions the MBL clouds do not have enough time to evolve as in the idealized models. (auth)« less

  12. Macroalgal blooms alter community structure and primary productivity in marine ecosystems.

    PubMed

    Lyons, Devin A; Arvanitidis, Christos; Blight, Andrew J; Chatzinikolaou, Eva; Guy-Haim, Tamar; Kotta, Jonne; Orav-Kotta, Helen; Queirós, Ana M; Rilov, Gil; Somerfield, Paul J; Crowe, Tasman P

    2014-09-01

    Eutrophication, coupled with loss of herbivory due to habitat degradation and overharvesting, has increased the frequency and severity of macroalgal blooms worldwide. Macroalgal blooms interfere with human activities in coastal areas, and sometimes necessitate costly algal removal programmes. They also have many detrimental effects on marine and estuarine ecosystems, including induction of hypoxia, release of toxic hydrogen sulphide into the sediments and atmosphere, and the loss of ecologically and economically important species. However, macroalgal blooms can also increase habitat complexity, provide organisms with food and shelter, and reduce other problems associated with eutrophication. These contrasting effects make their overall ecological impacts unclear. We conducted a systematic review and meta-analysis to estimate the overall effects of macroalgal blooms on several key measures of ecosystem structure and functioning in marine ecosystems. We also evaluated some of the ecological and methodological factors that might explain the highly variable effects observed in different studies. Averaged across all studies, macroalgal blooms had negative effects on the abundance and species richness of marine organisms, but blooms by different algal taxa had different consequences, ranging from strong negative to strong positive effects. Blooms' effects on species richness also depended on the habitat where they occurred, with the strongest negative effects seen in sandy or muddy subtidal habitats and in the rocky intertidal. Invertebrate communities also appeared to be particularly sensitive to blooms, suffering reductions in their abundance, species richness, and diversity. The total net primary productivity, gross primary productivity, and respiration of benthic ecosystems were higher during macroalgal blooms, but blooms had negative effects on the productivity and respiration of other organisms. These results suggest that, in addition to their direct social and

  13. Structure and membrane actions of a marine worm protein cytolysin, Cerebratulus toxin A-III.

    PubMed

    Kem, W R

    1994-02-28

    Four homologous Cerebratulus lacteus A toxins are the first and as yet only protein cytolysins to be isolated from an ancient phylum of marine worms, the nemertines. The most abundant and toxic variant, toxin A-III, has been sequenced and its mechanisms of action studied in the most detail. It consists of a single basic polypeptide chain of 95 amino acid residues cross-linked by three disulfide bonds, and possesses a predominantly alpha-helical secondary structure. The C-terminal third of the toxin sequence is postulated to be a helical 'hairpin' structure involved in pore formation. Toxin A-III permeabilizes a variety of cells as well as liposomes made from a variety of phospholipids; apparently large pores are formed, as large proteins are released almost as rapidly as small organic molecules and inorganic ions. At sublytic concentrations, the toxin also inhibits protein kinase C and endogenous voltage-gated cation selective (sodium, calcium) channels occurring in the nervous and cardiovascular systems. A curious observation, also reported for colicins and some other protein cytolysins, was the conservation of toxin secondary structure upon insertion into phospholipid liposomes, despite the strong likelihood that significant changes in tertiary structure occur to provide a hydrophobic surface for interaction with membrane lipids. Because of its small size and presumed single helical hairpin secondary structure, Cl toxin A-III is an excellent molecular subject for investigating protein insertion into biological membranes and mechanisms of pore formation.

  14. Compartments in a marine food web associated with phylogeny, body mass, and habitat structure.

    PubMed

    Rezende, Enrico L; Albert, Eva M; Fortuna, Miguel A; Bascompte, Jordi

    2009-08-01

    A long-standing question in community ecology is whether food webs are organized in compartments, where species within the same compartment interact frequently among themselves, but show fewer interactions with species from other compartments. Finding evidence for this community organization is important since compartmentalization may strongly affect food web robustness to perturbation. However, few studies have found unequivocal evidence of compartments, and none has quantified the suite of mechanisms generating such a structure. Here, we combine computational tools from the physics of complex networks with phylogenetic statistical methods to show that a large marine food web is organized in compartments, and that body size, phylogeny, and spatial structure are jointly associated with such a compartmentalized structure. Sharks account for the majority of predatory interactions within their compartments. Phylogenetically closely related shark species tend to occupy different compartments and have divergent trophic levels, suggesting that competition may play an important role structuring some of these compartments. Current overfishing of sharks has the potential to change the structural properties, which might eventually affect the stability of the food web. PMID:19490028

  15. Compartments in a marine food web associated with phylogeny, body mass, and habitat structure.

    PubMed

    Rezende, Enrico L; Albert, Eva M; Fortuna, Miguel A; Bascompte, Jordi

    2009-08-01

    A long-standing question in community ecology is whether food webs are organized in compartments, where species within the same compartment interact frequently among themselves, but show fewer interactions with species from other compartments. Finding evidence for this community organization is important since compartmentalization may strongly affect food web robustness to perturbation. However, few studies have found unequivocal evidence of compartments, and none has quantified the suite of mechanisms generating such a structure. Here, we combine computational tools from the physics of complex networks with phylogenetic statistical methods to show that a large marine food web is organized in compartments, and that body size, phylogeny, and spatial structure are jointly associated with such a compartmentalized structure. Sharks account for the majority of predatory interactions within their compartments. Phylogenetically closely related shark species tend to occupy different compartments and have divergent trophic levels, suggesting that competition may play an important role structuring some of these compartments. Current overfishing of sharks has the potential to change the structural properties, which might eventually affect the stability of the food web.

  16. Population structure in the native range predicts the spread of introduced marine species.

    PubMed

    Gaither, Michelle R; Bowen, Brian W; Toonen, Robert J

    2013-06-01

    Forecasting invasion success remains a fundamental challenge in invasion biology. The effort to identify universal characteristics that predict which species become invasive has faltered in part because of the diversity of taxa and systems considered. Here, we use an alternative approach focused on the spread stage of invasions. FST, a measure of alternative fixation of alleles, is a common proxy for realized dispersal among natural populations, summarizing the combined influences of life history, behaviour, habitat requirements, population size, history and ecology. We test the hypothesis that population structure in the native range (FST) is negatively correlated with the geographical extent of spread of marine species in an introduced range. An analysis of the available data (29 species, nine phyla) revealed a significant negative correlation (R(2) = 0.245-0.464) between FST and the extent of spread of non-native species. Mode FST among pairwise comparisons between populations in the native range demonstrated the highest predictive power (R(2) = 0.464, p < 0.001). There was significant improvement when marker type was considered, with mtDNA datasets providing the strongest relationship (n = 21, R(2) = 0.333-0.516). This study shows that FST can be used to make qualitative predictions concerning the geographical extent to which a non-native marine species will spread once established in a new area.

  17. Population structure in the native range predicts the spread of introduced marine species.

    PubMed

    Gaither, Michelle R; Bowen, Brian W; Toonen, Robert J

    2013-06-01

    Forecasting invasion success remains a fundamental challenge in invasion biology. The effort to identify universal characteristics that predict which species become invasive has faltered in part because of the diversity of taxa and systems considered. Here, we use an alternative approach focused on the spread stage of invasions. FST, a measure of alternative fixation of alleles, is a common proxy for realized dispersal among natural populations, summarizing the combined influences of life history, behaviour, habitat requirements, population size, history and ecology. We test the hypothesis that population structure in the native range (FST) is negatively correlated with the geographical extent of spread of marine species in an introduced range. An analysis of the available data (29 species, nine phyla) revealed a significant negative correlation (R(2) = 0.245-0.464) between FST and the extent of spread of non-native species. Mode FST among pairwise comparisons between populations in the native range demonstrated the highest predictive power (R(2) = 0.464, p < 0.001). There was significant improvement when marker type was considered, with mtDNA datasets providing the strongest relationship (n = 21, R(2) = 0.333-0.516). This study shows that FST can be used to make qualitative predictions concerning the geographical extent to which a non-native marine species will spread once established in a new area. PMID:23595272

  18. Effects of Marine Reserves versus Nursery Habitat Availability on Structure of Reef Fish Communities

    PubMed Central

    Nagelkerken, Ivan; Grol, Monique G. G.; Mumby, Peter J.

    2012-01-01

    No-take marine fishery reserves sustain commercial stocks by acting as buffers against overexploitation and enhancing fishery catches in adjacent areas through spillover. Likewise, nursery habitats such as mangroves enhance populations of some species in adjacent habitats. However, there is lack of understanding of the magnitude of stock enhancement and the effects on community structure when both protection from fishing and access to nurseries concurrently act as drivers of fish population dynamics. In this study we test the separate as well as interactive effects of marine reserves and nursery habitat proximity on structure and abundance of coral reef fish communities. Reserves had no effect on fish community composition, while proximity to nursery habitat only had a significant effect on community structure of species that use mangroves or seagrass beds as nurseries. In terms of reef fish biomass, proximity to nursery habitat by far outweighed (biomass 249% higher than that in areas with no nursery access) the effects of protection from fishing in reserves (biomass 21% lower than non-reserve areas) for small nursery fish (≤25 cm total length). For large-bodied individuals of nursery species (>25 cm total length), an additive effect was present for these two factors, although fish benefited more from fishing protection (203% higher biomass) than from proximity to nurseries (139% higher). The magnitude of elevated biomass for small fish on coral reefs due to proximity to nurseries was such that nursery habitats seem able to overrule the usually positive effects on fish biomass by reef reserves. As a result, conservation of nursery habitats gains importance and more consideration should be given to the ecological processes that occur along nursery-reef boundaries that connect neighboring ecosystems. PMID:22675474

  19. 75 FR 67951 - Takes of Marine Mammals Incidental to Specified Activities; Piling and Structure Removal in...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-11-04

    ... respect to the ecology and life history of potentially affected marine mammals (e.g., will harassment... National Oceanic and Atmospheric Administration Takes of Marine Mammals Incidental to Specified Activities... implementing the Marine Mammal Protection Act (MMPA), as amended, notification is hereby given that...

  20. A Possible Operational Motivation for the Orthocomplementation in Quantum Structures

    NASA Astrophysics Data System (ADS)

    D'Hooghe, Bart

    2010-11-01

    In the foundations of quantum mechanics Gleason’s theorem dictates the uniqueness of the state transition probability via the inner product of the corresponding state vectors in Hilbert space, independent of which measurement context induces this transition. We argue that the state transition probability should not be regarded as a secondary concept which can be derived from the structure on the set of states and properties, but instead should be regarded as a primitive concept for which measurement context is crucial. Accordingly, we adopt an operational approach to quantum mechanics in which a physical entity is defined by the structure of its set of states, set of properties and the possible (measurement) contexts which can be applied to this entity. We put forward some elementary definitions to derive an operational theory from this State-COntext-Property (SCOP) formalism. We show that if the SCOP satisfies a Gleason-like condition, namely that the state transition probability is independent of which measurement context induces the change of state, then the lattice of properties is orthocomplemented, which is one of the ‘quantum axioms’ used in the Piron-Solèr representation theorem for quantum systems. In this sense we obtain a possible physical meaning for the orthocomplementation widely used in quantum structures.

  1. [Tableau de l'opération de la taille by Marin Marais (1725)--a bladder calculus operation represented in music].

    PubMed

    Evers, S

    1993-05-01

    The piece "Tableau de l'opération de la taille", written for viola by the French composer Marin Marais in 1725, presents an operation for removal of a stone in the bladder in musical form. Musicological analysis shows that in the early 18th century the lateral perineal approach was normally used for such operations in France. Medico-historical annotations complement the musicological analysis. PMID:8511837

  2. AFLPs Reveal Different Population Genetic Structure under Contrasting Environments in the Marine Snail Nucella lapillus L.

    PubMed Central

    Carro, Belén; Quintela, María; Ruiz, José Miguel; Barreiro, Rodolfo

    2012-01-01

    Dispersal has received growing attention in marine ecology, particularly since evidence obtained with up-to-date techniques challenged the traditional view. The dogwhelk Nucella lapillus L., a sedentary gastropod with direct development, is a good example: dispersal was traditionally assumed to be limited until studies with microsatellites disputed this idea. To shed some light on this controversy, the genetic structure of dogwhelk populations in northwest Spain was investigated with highly polymorphic AFLP markers giving special attention to the influence of hydrodynamic stress. In agreement with the expectations for a poor disperser, our results show a significant genetic structure at regional (<200 km) and areal scales (<15 km). However, the spatial genetic structure varied with wave-exposure in the present case study: IBD was evident under sheltered conditions but absent from the exposed area where genetic differentiation was stronger. Our results provide evidence that differences in wave-exposure can exert a detectable influence on the genetic structure of coastal organisms, even in species without a planktonic larva. PMID:23185435

  3. Hierarchical population structure and habitat differences in a highly mobile marine species: the Atlantic spotted dolphin.

    PubMed

    Viricel, Amélia; Rosel, Patricia E

    2014-10-01

    Recent molecular studies have shown that highly mobile species with continuous distributions can exhibit fine-scale population structure. In this context, we assessed genetic structure within a marine species with high dispersal potential, the Atlantic spotted dolphin (Stenella frontalis). Using 19 microsatellite loci and mitochondrial control region sequences, population structure was investigated in the western North Atlantic, the Gulf of Mexico and the Azores Islands. Analyses of the microsatellite data identified four distinct genetic clusters, which were supported by the control region sequences. The highest level of divergence was seen between two clusters corresponding to previously described morphotypes that inhabit oceanic and shelf waters. The combined morphological and genetic evidence suggests these two lineages are on distinct evolutionary trajectories and could be considered distinct subspecies despite their parapatry. Further analysis of the continental shelf cluster resulted in three groups: animals inhabiting shelf waters in the western North Atlantic, the eastern Gulf of Mexico and the western Gulf of Mexico. Analyses of environmental data indicate the four genetic clusters inhabit distinct habitats in terms of depth and sea surface temperature. Contemporary dispersal rate estimates suggest all of these populations should be considered as distinct management units. Conversely, no significant genetic differentiation was observed between S. frontalis from offshore waters of the western North Atlantic and the Azores, which are separated by approximately 4500 km. Overall, the hierarchical structure observed within the Atlantic spotted dolphin shows that the biogeography of the species is complex because it is not shaped solely by geographic distance. PMID:25256360

  4. Hierarchical population structure and habitat differences in a highly mobile marine species: the Atlantic spotted dolphin.

    PubMed

    Viricel, Amélia; Rosel, Patricia E

    2014-10-01

    Recent molecular studies have shown that highly mobile species with continuous distributions can exhibit fine-scale population structure. In this context, we assessed genetic structure within a marine species with high dispersal potential, the Atlantic spotted dolphin (Stenella frontalis). Using 19 microsatellite loci and mitochondrial control region sequences, population structure was investigated in the western North Atlantic, the Gulf of Mexico and the Azores Islands. Analyses of the microsatellite data identified four distinct genetic clusters, which were supported by the control region sequences. The highest level of divergence was seen between two clusters corresponding to previously described morphotypes that inhabit oceanic and shelf waters. The combined morphological and genetic evidence suggests these two lineages are on distinct evolutionary trajectories and could be considered distinct subspecies despite their parapatry. Further analysis of the continental shelf cluster resulted in three groups: animals inhabiting shelf waters in the western North Atlantic, the eastern Gulf of Mexico and the western Gulf of Mexico. Analyses of environmental data indicate the four genetic clusters inhabit distinct habitats in terms of depth and sea surface temperature. Contemporary dispersal rate estimates suggest all of these populations should be considered as distinct management units. Conversely, no significant genetic differentiation was observed between S. frontalis from offshore waters of the western North Atlantic and the Azores, which are separated by approximately 4500 km. Overall, the hierarchical structure observed within the Atlantic spotted dolphin shows that the biogeography of the species is complex because it is not shaped solely by geographic distance.

  5. Structural properties of the tubular appendage spinae from marine bacterium Roseobacter sp. strain YSCB

    PubMed Central

    Bernadac, A.; Wu, L.-F.; Santini, C.-L.; Vidaud, C.; Sturgis, J. N.; Menguy, N.; Bergam, P.; Nicoletti, C.; Xiao, T.

    2012-01-01

    Spinae are tubular surface appendages broadly found in Gram-negative bacteria. Little is known about their architecture, function or origin. Here, we report structural characterization of the spinae from marine bacteria Roseobacter sp. YSCB. Electron cryo-tomography revealed that a single filament winds into a hollow flared base with progressive change to a cylinder. Proteinase K unwound the spinae into proteolysis-resistant filaments. Thermal treatment ripped the spinae into ribbons that were melted with prolonged heating. Circular dichroism spectroscopy revealed a dominant beta-structure of the spinae. Differential scanning calorimetry analyses showed three endothermic transformations at 50–85°C, 98°C and 123°C, respectively. The heating almost completely disintegrated the spinae, abolished the 98°C transition and destroyed the beta-structure. Infrared spectroscopy identified the amide I spectrum maximum at a position similar to that of amyloid fibrils. Therefore, the spinae distinguish from other bacterial appendages, e.g. flagella and stalks, in both the structure and mechanism of assembly. PMID:23230515

  6. Antipodal crambescin A2 homologues from the marine sponge Pseudaxinella reticulata. Antifungal structure-activity relationships.

    PubMed

    Jamison, Matthew T; Molinski, Tadeusz F

    2015-03-27

    Investigation of antifungal natural products from the marine sponge Pseudaxinella reticulata from the Bahamas led to the discovery of new crambescin homologues (1, 2) and enantiomers (3, 4) of known natural products. The cyclic-guanidine structures were solved through analysis of 2D NMR, MS-MS, and CD data. The absolute configurations of 1-4 were established as 13R-opposite of known homologues reported from Crambe crambe obtained from the Mediterranean Sea-by comparison of their CD spectra with predicted Cotton effects obtained from DFT calculations. Antifungal activities of 1-4 against the pathogenic strains Candida albicans and Cryptococcus sp. were observed to correlate potency (MIC50 and MIC90) with the length of the alkyl side chain. PMID:25738226

  7. Three-dimensional structure of fluid conduits sustaining an active deep marine cold seep

    NASA Astrophysics Data System (ADS)

    Hornbach, M. J.; Ruppel, C.; Van Dover, C. L.

    2007-03-01

    Cold seeps in deep marine settings emit fluids to the overlying ocean and are often associated with such seafloor flux indicators as chemosynthetic biota, pockmarks, and authigenic carbonate rocks. Despite evidence for spatiotemporal variability in the rate, locus, and composition of cold seep fluid emissions, the shallow subseafloor plumbing systems have never been clearly imaged in three dimensions. Using a novel, high-resolution approach, we produce the first three-dimensional image of possible fluid conduits beneath a cold seep at a study site within the Blake Ridge gas hydrate province. Complex, dendritic features diverge upward toward the seafloor from feeder conduits at depth and could potentially draw flow laterally by up to 103 m from the known seafloor seep, a pattern similar to that suggested for some hydrothermal vents. The biodiversity, community structure, and succession dynamics of chemosynthetic communities at cold seeps may largely reflect these complexities of subseafloor fluid flow.

  8. Three-dimensional structure of fluid conduits sustaining an active deep marine cold seep

    USGS Publications Warehouse

    Hornbach, M.J.; Ruppel, C.; Van Dover, C.L.

    2007-01-01

    Cold seeps in deep marine settings emit fluids to the overlying ocean and are often associated with such seafloor flux indicators as chemosynthetic biota, pockmarks, and authigenic carbonate rocks. Despite evidence for spatiotemporal variability in the rate, locus, and composition of cold seep fluid emissions, the shallow subseafloor plumbing systems have never been clearly imaged in three dimensions. Using a novel, high-resolution approach, we produce the first three-dimensional image of possible fluid conduits beneath a cold seep at a study site within the Blake Ridge gas hydrate province. Complex, dendritic features diverge upward toward the seafloor from feeder conduits at depth and could potentially draw flow laterally by up to 103 m from the known seafloor seep, a pattern similar to that suggested for some hydrothermal vents. The biodiversity, community structure, and succession dynamics of chemosynthetic communities at cold seeps may largely reflect these complexities of subseafloor fluid flow.

  9. Development of an adhesively bonded beryllium propulsion structure for the Mariner Mars 1971 spacecraft

    NASA Technical Reports Server (NTRS)

    Stevens, J. H.; Layman, W. E.

    1972-01-01

    The design, testing, and fabrication of the support truss structure for the propulsion system of the Mariner 9 spacecraft are described. Support is provided by an 8.9-kg (19.5-lbm) truss assembly consisting of beryllium tubes adhesively bonded to magnesium end fittings. Beryllium was selected for the tubular struts in the truss because of its exceptionally high stiffness-to-weight ratio. Adhesive bonding, rather than riveting, was utilized to join the struts to the end fittings because of the low toughness (high notch sensitivity) of beryllium. Magnesium, used in the end fittings, resulted in a 50% weight saving over aluminum since geometric factors in the fitting design resulted in low stress areas where magnesium's lower density is a benefit.

  10. Isolation, Structure Elucidation and Total Synthesis of Lajollamide A from the Marine Fungus Asteromyces cruciatus

    PubMed Central

    Gulder, Tobias A. M.; Hong, Hanna; Correa, Jhonny; Egereva, Ekaterina; Wiese, Jutta; Imhoff, Johannes F.; Gross, Harald

    2012-01-01

    The marine-derived filamentous fungus Asteromyces cruciatus 763, obtained off the coast of La Jolla, San Diego, USA, yielded the new pentapeptide lajollamide A (1), along with the known compounds regiolone (2), hyalodendrin (3), gliovictin (4), 1N-norgliovicitin (5), and bis-N-norgliovictin (6). The planar structure of lajollamide A (1) was determined by Nuclear Magnetic Resonance (NMR) spectroscopy in combination with mass spectrometry. The absolute configuration of lajollamide A (1) was unambiguously solved by total synthesis which provided three additional diastereomers of 1 and also revealed that an unexpected acid-mediated partial racemization (2:1) of the L-leucine and L-N-Me-leucine residues occurred during the chemical degradation process. The biological activities of the isolated metabolites, in particular their antimicrobial properties, were investigated in a series of assay systems. PMID:23342379

  11. Structure and activity of DmmA, a marine haloalkane dehalogenase

    SciTech Connect

    Gehret, Jennifer J.; Gu, Liangcai; Geders, Todd W.; Brown, William Clay; Gerwick, Lena; Gerwick, William H.; Sherman, David H.; Smith, Janet L.

    2012-08-01

    DmmA is a haloalkane dehalogenase (HLD) identified and characterized from the metagenomic DNA of a marine microbial consortium. Dehalogenase activity was detected with 1,3-dibromopropane as substrate, with steady-state kinetic parameters typical of HLDs (K{sub m} = 0.24 {+-} 0.05 mM, k{sub cat} = 2.4 {+-} 0.1 s{sup -1}). The 2.2-{angstrom} crystal structure of DmmA revealed a fold and active site similar to other HLDs, but with a substantially larger active site binding pocket, suggestive of an ability to act on bulky substrates. This enhanced cavity was shown to accept a range of linear and cyclic substrates, suggesting that DmmA will contribute to the expanding applications of HLDs.

  12. EGO: Towards a global glider infrastructure for the benefit of marine research and operational oceanography

    NASA Astrophysics Data System (ADS)

    Testor, Pierre

    2013-04-01

    In the 1990 s, while gliders were being developed and successfully passing first tests, their potential use for ocean research started to be discussed in international conferences because they could help us improve the cost-effectiveness, sampling, and distribution of the ocean observations (see OceanObs'99 Conference Statement - UNESCO). After the prototype phase, in the 2000 s, one could only witness the growing glider activity throughout the world. The first glider experiments in Europe brought together several teams that were interested in the technology and a consortium formed naturally from these informal collaborations. Since 2006, Everyone's Gliding Observatories (EGO - http://www.ego-network.org) Workshops and Glider Schools have been organized, whilst becoming the international forum for glider activities. Some key challenges have emerged from the expansion of the glider system and require now setting up a sustainable European as well as a global system to operate glider and to ensure a smooth and sustained link to the Global Ocean Observing System (GOOS). Glider technology faces many scientific, technological and logistical issues. In particular, it approaches the challenge of controlling many steerable probes in a variable environment for better sampling. It also needs the development of new formats and procedures in order to build glider observatories at a global level. Several geographically distributed teams of oceanographers now operate gliders, and there is a risk of fragmentation. We will here present results from our consortium who intends to solve most of these issues through scientific and technological coordination and networking. This approach is supported by the ESF through Cooperation in the field of Scientific and Technical Research (COST). The COST Action ES0904 "EGO" started in July 2010 aiming to build international cooperation and capacities at the scientific, technological, and organizational levels, for sustained observations of the

  13. Damage detection and health monitoring of operational structures

    SciTech Connect

    James, G.; Mayes, R.; Carne, T.; Reese, G.

    1994-09-01

    Initial damage detection/health monitoring experiments have been performed on three different operational structures: a fracture critical bridge, a composite wind turbine blade, and an aging aircraft. An induced damage test was performed on the Rio Grande/I40 bridge before its demolition. The composite wind turbine test was fatgued to failure with periodic modal testing performed throughout the testing. The front fuselage of a DC-9 aircraft was used as the testbed for an induced damage test. These tests have yielded important insights into techniques for experimental damage detection on real structures. Additionally, the data are currently being used with current damage detection algorithms to further develop the numerical technology. State of the art testing technologies such as, high density modal testing, scanning laser vibrometry and natural excitation testing have also been utilized for these tests.

  14. Structures of dimethylsulfoniopropionate-dependent demethylase from the marine organism Pelagabacter ubique

    SciTech Connect

    Schuller, David J.; Reisch, Chris R.; Moran, Mary Ann; Whitman, William B.; Lanzilotta, William N.

    2012-01-20

    Dimethylsulfoniopropionate (DMSP) is a ubiquitous algal metabolite and common carbon and sulfur source for marine bacteria. DMSP is a precursor for the climatically active gas dimethylsulfide that is readily oxidized to sulfate, sulfur dioxide, methanesulfonic acid, and other products that act as cloud condensation nuclei. Although the environmental importance of DMSP metabolism has been known for some time, the enzyme responsible for DMSP demethylation by marine bacterioplankton, dimethylsufoniopropionate-dependent demethylase A (DmdA, EC 2.1.1.B5), has only recently been identified and biochemically characterized. In this work, we report the structure for the apoenzyme DmdA from Pelagibacter ubique (2.1 {angstrom}), as well as for DmdA co-crystals soaked with substrate DMSP (1.6 {angstrom}) or the cofactor tetrahydrofolate (THF) (1.6 {angstrom}). Surprisingly, the overall fold of the DmdA is not similar to other enzymes that typically utilize the reduced form of THF and in fact is a triple domain structure similar to what has been observed for the glycine cleavage T protein or sarcosine oxidase. Specifically, while the THF binding fold appears conserved, previous biochemical studies have shown that all enzymes with a similar fold produce 5,10-methylene-THF, while DmdA catalyzes a redox-neutral methyl transfer reaction to produce 5-methyl-THF. On the basis of the findings presented herein and the available biochemical data, we outline a mechanism for a redox-neutral methyl transfer reaction that is novel to this conserved THF binding domain.

  15. Horizontal variability of the marine boundary layer structure upwind of San Nicolas Island during FIRE, 1987

    NASA Technical Reports Server (NTRS)

    Jensen, Douglas R.

    1990-01-01

    During the months of June and July 1987, the Marine Stratocumulus Intensive Field Observation Experiment of First ISCCP Regional Experiment (FIRE) was conducted in the Southern California offshore area in the vicinity of San Nicolas Island (SNI). The Naval Ocean Systems Center (NOSC) airborne platform was utilized during FIRE to investigate the upwind low level horizontal variability of the marine boundary layer structure to determine the representativeness of SNI-based measurements to upwind open ocean conditions. The NOSC airborne meteorological platform made three flights during FIRE, two during clear sky conditions (19 and 23 July), and one during two stratus conditions (15 July). The boundary layer structure variations associated with the stratus clouds of 15 July 1987 are discussed. Profiles of air temperature (AT) and relative humidity (RH) taken 'at' and 'upwind' of SNI do show differences between the so-called open ocean conditions and those taken near the island. However, the observed difference cannot be uniquely identified to island effects, especially since the upwind fluctuations of AT and RH bound the SNI measurements. Total optical depths measures at SNI do not appear to be greatly affected by any surface based aerosol effects created by the island and could therefore realistically represent open ocean conditions. However, if one were to use the SNI aerosol measurements to predict ship to ship EO propagation conditions, significant errors could be introduced due to the increased number of surface aerosols observed near SNI which may not be, and were not, characteristic of open ocean conditions. Sea surface temperature measurements taken at the island will not, in general, represent those upwind open ocean conditions. Also, since CTT's varied appreciably along the upwind radials, measurements of CTT over the island may not be representative of actual open ocean CTT's.

  16. Wood digestion in Pselactus spadix Herbst--a weevil attacking marine timber structures.

    PubMed

    Oevering, Pascal; Pitman, Andrew J; Pandey, Krishna K

    2003-04-01

    Pselactus spadix tunnels timber structures in the marine environment. Recent studies reported a cosmopolitan distribution for this weevil, which is frequently found in harbour and port areas. P. spadix feeds on timber (hardwood and softwood) in immature and adult life stages, but its digestion of wood components had not been investigated. Using dry weight analyses of tunnel walls and frass produced, P. spadix adults consumed Scots pine with soft rot decay at a rate of 1.59 +/- 0.37 mg d-1 and the digestibility of this substrate was 57.96 +/- 5.89 (i.e. for 100 mg consumed SR-pine, 58 mg was digested). Using gravimetric analysis to quantify structural wood components in tunnel walls and frass, P. spadix adults were found to digest cellulose, lignin and hemicellulose with digestibility coefficients of 82.2, 41.2 and 14.5 respectively. Fourier Transform Infrared (FTIR) spectroscopy analyses of tunnel walls and frass of adults and larvae from soft rotted pine also indicated digestion of all structural components, with larvae digesting cellulose and lignin more efficiently than adults. When FTIR was employed to analyse adult tunnel walls and frass from undecayed pine, cellulose and hemicellulose were digested, but no evidence of lignin digestion was found. This study shows that adults digest lignin when soft rot is present and suggests a symbiotic function of wood degrading microorganisms. PMID:14618727

  17. SPring-8 Structural Biology Beamlines / Automatic Beamline Operation at RIKEN Structural Genomics Beamlines

    SciTech Connect

    Ueno, Go; Hasegawa, Kazuya; Okazaki, Nobuo; Sakai, Hisanobu; Kumasaka, Takashi; Yamamoto, Masaki

    2007-01-19

    RIKEN Structural Genomics Beamlines (BL26B1 and BL26B2) at SPring-8 have been constructed for high throughput protein crystallography. The beamline operation is automated cooperating with the sample changer robot. The operation software provides a centralized control utilizing the client and server architecture. The sample management system with the networked database has been implemented to accept dry-shipped crystals from distant users.

  18. Synoptic-scale forcing of the thermodynamic structure of the marine boundary layer during ASTEX

    SciTech Connect

    Kloesel, K.; Wegiel, J.

    1994-12-31

    The purpose of this study will be to evaluate an 11-year (1980--1990) climatology of subsidence inversion structure in the Eastern North Atlantic. Data from Lajes Air Base on the island of Terciera in the Azores, augmented with soundings from the ASTEX field experiment based at Santa Maria and Porto Santo in the Azores were used to evaluate the mean thermodynamic structure of the subsidence inversion during the month of June, and the evolution of the thermodynamic structure from early June through late June, a period coincidental with the ASTEX field operations.

  19. Efficient Cache use for Stencil Operations on Structured Discretization Grids

    NASA Technical Reports Server (NTRS)

    Frumkin, Michael; VanderWijngaart, Rob F.

    2001-01-01

    We derive tight bounds on the cache misses for evaluation of explicit stencil operators on structured grids. Our lower bound is based on the isoperimetrical property of the discrete octahedron. Our upper bound is based on a good surface to volume ratio of a parallelepiped spanned by a reduced basis of the interference lattice of a grid. Measurements show that our algorithm typically reduces the number of cache misses by a factor of three, relative to a compiler optimized code. We show that stencil calculations on grids whose interference lattice have a short vector feature abnormally high numbers of cache misses. We call such grids unfavorable and suggest to avoid these in computations by appropriate padding. By direct measurements on a MIPS R10000 processor we show a good correlation between abnormally high numbers of cache misses and unfavorable three-dimensional grids.

  20. Single-mode operation of mushroom structure surface emitting lasers

    SciTech Connect

    Wang, Y.J.; Dziura, T.G.; Wang, S.C. ); Du, G.; Wang, S. )

    1991-01-01

    Mushroom structure vertical cavity surface emitting lasers with a 0.6 {mu}m GaAs active layer sandwiched by two Al{sub 0.6{sup {minus}}}Ga{sub 0.4}As-Al{sub 0.08}Ga{sub 0.92}As multilayers as top and bottom mirrors exhibit 15 mA pulsed threshold current at 880 nm. Single longitudinal and single transverse mode operation was achieved on lasers with a 5 {mu}m diameter active region at current levels near 2 {times} I{sub th}. The light output above threshold current was linearly polarized with a polarization ratio of 25:1.

  1. Synthesis and structure-activity relationships of the halovirs, antiviral natural products from a marine-derived fungus.

    PubMed

    Rowley, David C; Kelly, Sara; Jensen, Paul; Fenical, William

    2004-09-15

    The halovirs are linear, lipophilic peptides produced by a marine-derived fungus of the genus Scytalidium. We recently reported that these molecules possess potent in vitro activity against the herpes simplex viruses 1 and 2. Here we present structure-activity relationships defining key structural elements for optimal viral inhibition. Results demonstrate that an N(alpha)-acyl chain of at least 14 carbons and an Aib-Pro dipeptide are critical for maintaining the antiviral activity.

  2. Determination of the chemical structures of tandyukisins B-D, isolated from a marine sponge-derived fungus.

    PubMed

    Yamada, Takeshi; Umebayashi, Yoshihide; Kawashima, Maiko; Sugiura, Yuma; Kikuchi, Takashi; Tanaka, Reiko

    2015-05-01

    Tandyukisins B-D (1-3), novel decalin derivatives, have been isolated from a strain of Trichoderma harzianum OUPS-111D-4 originally derived from the marine sponge Halichondria okadai, and their structures have been elucidated on the basis of spectroscopic analyses using 1D and 2D NMR techniques. In addition, their chemical structures were established by chemical transformation. They exhibited weak cytotoxicity, but selective growth inhibition on panel screening using 39 human cancer cell lines. PMID:26006715

  3. Structure of marine predator and prey communities along environmental gradients in a glaciated fjord

    USGS Publications Warehouse

    Renner, Martin; Arimitsu, Mayumi L.; Piatt, John F.

    2012-01-01

    Spatial patterns of marine predator communities are influenced to varying degrees by prey distribution and environmental gradients. We examined physical and biological attributes of an estuarine fjord with strong glacier influence to determine the factors that most influence the structure of predator and prey communities. Our results suggest that some species, such as walleye pollock (Theragra chalcogramma), black-legged kittiwake (Rissa tridactyla), and glaucous-winged gull (Larus glaucescens), were widely distributed across environmental gradients, indicating less specialization, whereas species such as capelin (Mallotus villosus), harbor seal (Phoca vitulina), and Kittlitz's murrelet (Brachyramphus brevirostris) appeared to have more specialized habitat requirements related to glacial influence. We found that upper trophic level communities were well correlated with their mid trophic level prey community, but strong physical gradients in photic depth, temperature, and nutrients played an important role in community structure as well. Mid-trophic level forage fish communities were correlated with the physical gradients more closely than upper trophic levels were, and they showed strong affinity to tidewater glaciers. Silica was closely correlated with the distribution of fish communities, the mechanisms of which deserve further study.

  4. Spatially structured populations with a low level of cryptic diversity in European marine Gastrotricha.

    PubMed

    Kieneke, Alexander; Martínez Arbizu, Pedro M; Fontaneto, Diego

    2012-03-01

    Species of the marine meiofauna such as Gastrotricha are known to lack dispersal stages and are thus assumed to have low dispersal ability and low levels of gene flow between populations. Yet, most species are widely distributed, and this creates a paradox. To shed light on this apparent paradox, we test (i) whether such wide distribution may be due to misidentification and lumping of cryptic species with restricted distributions and (ii) whether spatial structures exist for the phylogeography of gastrotrichs. As a model, we used the genus Turbanella in NW Europe. DNA taxonomy using a mitochondrial and a nuclear marker supports distinctness of four traditional species (Turbanella ambronensis, T. bocqueti, T. mustela and T. cornuta) and provides evidence for two cryptic species within T. hyalina. An effect of geography on the within-species genetic structure is indeed present, with the potential for understanding colonization processes and for performing phylogeographic inference from microscopic animals. On the other hand, the occurrence of widely distributed haplotypes indicates long-distance dispersal as well, despite the assumed low dispersal ability of gastrotrichs. PMID:22257178

  5. Hierarchical population genetic structure in a direct developing antarctic marine invertebrate.

    PubMed

    Hoffman, Joseph I; Clarke, Andrew; Clark, Melody S; Peck, Lloyd S

    2013-01-01

    Understanding the relationship between life-history variation and population structure in marine invertebrates is not straightforward. This is particularly true of polar species due to the difficulty of obtaining samples and a paucity of genomic resources from which to develop nuclear genetic markers. Such knowledge, however, is essential for understanding how different taxa may respond to climate change in the most rapidly warming regions of the planet. We therefore used over two hundred polymorphic Amplified Fragment Length Polymorphisms (AFLPs) to explore population connectivity at three hierachical spatial scales in the direct developing Antarctic topshell Margarella antarctica. To previously published data from five populations spanning a 1500 km transect along the length of the Western Antarctic Peninsula, we added new AFLP data for four populations separated by up to 6 km within Ryder Bay, Adelaide Island. Overall, we found a nonlinear isolation-by-distance pattern, suggestive of weaker population structure within Ryder Bay than is present over larger spatial scales. Nevertheless, significantly positive F st values were obtained in all but two of ten pairwise population comparisons within the bay following Bonferroni correction for multiple tests. This is in contrast to a previous study of the broadcast spawner Nacella concinna that found no significant genetic differences among several of the same sites. By implication, the topshell's direct-developing lifestyle may constrain its ability to disperse even over relatively small geographic scales.

  6. Iridescence of a Marine Bacterium and Classification of Prokaryotic Structural Colors

    PubMed Central

    Vukusic, Peter; Luke, Stephen

    2012-01-01

    Iridescence is a property of structural color that is occasionally encountered in higher eukaryotes but that has been poorly documented in the prokaryotic kingdom. In the present work, we describe a marine bacterium, identified as Cellulophaga lytica, isolated from the surface of an anemone, that exhibits bright green iridescent colonies under direct epi-illumination. This phenomenon has not previously been investigated in detail. In this study, color changes of C. lytica colonies were observed at various angles of direct illumination or observation. Its iridescent green appearance was dominant on various growth media. Red and violet colors were also discerned on colony edges. Remarkable C. lytica bacterial iridescence was revealed and characterized using high-resolution optical spectrometry. In addition to this, by culturing other bacterial strains to which various forms of faintly iridescent traits have previously been attributed, we identify four principal appearance characteristics of structural color in prokaryotes. A new general classification of bacterial iridescence is therefore proposed in this study. Furthermore, a specific separate class is described for iridescent C. lytica strains because they exhibit what is so far a unique intense glitter-like iridescence in reflection. C. lytica is the first prokaryote discovered to produce the same sort of intense iridescence under direct illumination as that associated with higher eukaryotes, like some insects and birds. Due to the nature of bacterial biology, cultivation, and ubiquity, this discovery may be of significant interest for both ecological and nanoscience endeavors. PMID:22267664

  7. Photothermal and Structural Comparative Analysis of Chitinous Exoskeletons of Marine Invertebrates

    NASA Astrophysics Data System (ADS)

    Juárez-de la Rosa, B. A.; Yañez-Limón, J. M.; Tiburcio-Moreno, J. A.; Zambrano, M.; Ardisson, P.-L.; Quintana, P.; Alvarado-Gil, J. J.

    2012-11-01

    Chitinous materials are common in nature and provide different functions including protection and support of many invertebrate animals. Exoskeletons in these organisms constitute the boundary regulating interaction between the animal and the external environment. For this reason, it is important to study the physical properties of these skeletons, in particular, thermal properties. The objective of this study is to investigate the thermal diffusivity of the skeletons of four species of marine invertebrates, Antipathes caribbeana (black coral), Panulinus argus (lobster), Callinectes sapidus (crab), and Limulus polyphemus (xiphosure). Thermal characterization is performed using photothermal radiometry (PTR) and laser-flash techniques. The measurements are complemented with structural characterization using X-ray diffraction. The results using both laser flash and PTR are consistent. These indicate that the thermal properties are strongly dependent on the presence of biogenic minerals (calcium and/or magnesium) and on the crystallinity index of the structure. The thermal-diffusivity values show an increase as a function of the crystallinity index.

  8. Structural differences between chitin and chitosan extracted from three different marine sources.

    PubMed

    Hajji, Sawssen; Younes, Islem; Ghorbel-Bellaaj, Olfa; Hajji, Rachid; Rinaudo, Marguerite; Nasri, Moncef; Jellouli, Kemel

    2014-04-01

    Three marine sources of chitin from Tunisia were investigated. Structural differences between α-chitin from shrimp (Penaeus kerathurus) waste, crab (Carcinus mediterraneus) shells, and β-chitin from cuttlefish (Sepia officinalis) bones were studied by the (13)C NMR, FTIR, and XRD diffractograms. The (13)C NMR analysis showed a splitting of the C3 and C5 carbon signals for α-chitin, while that of β-chitin was merged into a single resonance. The bands contour of deconvoluted and curve-fit FTIR spectra showed a more detailed structure of α-chitin in the region of O-H, N-H and CO stretching regions. IR and (13)C NMR were used to determine the chitin degree of acetylation (DA). XRD analysis indicated that α-chitins were more crystalline polymorph than β-chitin. Shrimp chitin was obtained with a good yield (20% on raw material dry weight) and no residual protein and salts. Chitosans, with a DA lower than 20% and relatively low molecular masses were prepared from the wet chitins in the same experimental conditions. They were perfectly soluble in acidic medium. Nevertheless, chitin and chitosan characteristics were depending upon the chitin source.

  9. Spatially structured populations with a low level of cryptic diversity in European marine Gastrotricha.

    PubMed

    Kieneke, Alexander; Martínez Arbizu, Pedro M; Fontaneto, Diego

    2012-03-01

    Species of the marine meiofauna such as Gastrotricha are known to lack dispersal stages and are thus assumed to have low dispersal ability and low levels of gene flow between populations. Yet, most species are widely distributed, and this creates a paradox. To shed light on this apparent paradox, we test (i) whether such wide distribution may be due to misidentification and lumping of cryptic species with restricted distributions and (ii) whether spatial structures exist for the phylogeography of gastrotrichs. As a model, we used the genus Turbanella in NW Europe. DNA taxonomy using a mitochondrial and a nuclear marker supports distinctness of four traditional species (Turbanella ambronensis, T. bocqueti, T. mustela and T. cornuta) and provides evidence for two cryptic species within T. hyalina. An effect of geography on the within-species genetic structure is indeed present, with the potential for understanding colonization processes and for performing phylogeographic inference from microscopic animals. On the other hand, the occurrence of widely distributed haplotypes indicates long-distance dispersal as well, despite the assumed low dispersal ability of gastrotrichs.

  10. Chitin and Chitosan Preparation from Marine Sources. Structure, Properties and Applications

    PubMed Central

    Younes, Islem; Rinaudo, Marguerite

    2015-01-01

    This review describes the most common methods for recovery of chitin from marine organisms. In depth, both enzymatic and chemical treatments for the step of deproteinization are compared, as well as different conditions for demineralization. The conditions of chitosan preparation are also discussed, since they significantly impact the synthesis of chitosan with varying degree of acetylation (DA) and molecular weight (MW). In addition, the main characterization techniques applied for chitin and chitosan are recalled, pointing out the role of their solubility in relation with the chemical structure (mainly the acetyl group distribution along the backbone). Biological activities are also presented, such as: antibacterial, antifungal, antitumor and antioxidant. Interestingly, the relationship between chemical structure and biological activity is demonstrated for chitosan molecules with different DA and MW and homogeneous distribution of acetyl groups for the first time. In the end, several selected pharmaceutical and biomedical applications are presented, in which chitin and chitosan are recognized as new biomaterials taking advantage of their biocompatibility and biodegradability. PMID:25738328

  11. Chemical and structural control of the partitioning of Co, Ce, and Pb in marine ferromanganese oxides

    NASA Astrophysics Data System (ADS)

    Takahashi, Yoshio; Manceau, Alain; Geoffroy, Nicolas; Marcus, Matthew A.; Usui, Akira

    2007-02-01

    The oxidation state and mineral phase association of Co, Ce, and Pb in hydrogenetic, diagenetic, and hydrothermal marine ferromanganese oxides were characterized by X-ray absorption near-edge structure (XANES) and extended X-ray absorption fine structure (EXAFS) spectroscopy and chemical extraction. Cobalt is trivalent and associated exclusively with the Mn oxide component (vernadite). Cerium is tetravalent in all genetic-type oxides (detection limit for Ce(III) ˜ 5 at. %), including Fe-rich areas (ferrihydrite) of hydrogenetic oxides, and is associated primarily with vernadite. Thus, the extent of a Ce anomaly does not result from variations in redox conditions, but appears to be kinetically controlled, decreasing when the growth rate increases from hydrogenetic to diagenetic to hydrothermal oxides. Lead is divalent and associated with Mn and Fe oxides in variable proportions. According to EXAFS data, Pb is mostly sorbed on edge sites at chain terminations in Fe oxide and at layer edges in Mn oxide (ES complex), and also on interlayer vacancy sites in Mn oxide (TCS complex). Sequential leaching experiments, spectroscopic data, and electrochemical considerations suggest that the geochemical partitioning in favor of the Mn oxide component decreases from Co to Ce to Pb, and depends on their oxidative scavenging by Mn and Fe oxides.

  12. Spatial and seasonal variation in diversity and structure of microbial biofilms on marine plastics in Northern European waters.

    PubMed

    Oberbeckmann, Sonja; Loeder, Martin G J; Gerdts, Gunnar; Osborn, A Mark

    2014-11-01

    Plastic pollution is now recognised as a major threat to marine environments and marine biota. Recent research highlights that diverse microbial species are found to colonise plastic surfaces (the plastisphere) within marine waters. Here, we investigate how the structure and diversity of marine plastisphere microbial community vary with respect to season, location and plastic substrate type. We performed a 6-week exposure experiment with polyethylene terephthalate (PET) bottles in the North Sea (UK) as well as sea surface sampling of plastic polymers in Northern European waters. Scanning electron microscopy revealed diverse plastisphere communities comprising prokaryotic and eukaryotic microorganisms. Denaturing gradient gel electrophoresis (DGGE) and sequencing analysis revealed that plastisphere microbial communities on PET fragments varied both with season and location and comprised of bacteria belonging to Bacteroidetes, Proteobacteria, Cyanobacteria and members of the eukaryotes Bacillariophyceae and Phaeophyceae. Polymers sampled from the sea surface mainly comprised polyethylene, polystyrene and polypropylene particles. Variation within plastisphere communities on different polymer types was observed, but communities were primarily dominated by Cyanobacteria. This research reveals that the composition of plastisphere microbial communities in marine waters varies with season, geographical location and plastic substrate type.

  13. Spatial and seasonal variation in diversity and structure of microbial biofilms on marine plastics in Northern European waters.

    PubMed

    Oberbeckmann, Sonja; Loeder, Martin G J; Gerdts, Gunnar; Osborn, A Mark

    2014-11-01

    Plastic pollution is now recognised as a major threat to marine environments and marine biota. Recent research highlights that diverse microbial species are found to colonise plastic surfaces (the plastisphere) within marine waters. Here, we investigate how the structure and diversity of marine plastisphere microbial community vary with respect to season, location and plastic substrate type. We performed a 6-week exposure experiment with polyethylene terephthalate (PET) bottles in the North Sea (UK) as well as sea surface sampling of plastic polymers in Northern European waters. Scanning electron microscopy revealed diverse plastisphere communities comprising prokaryotic and eukaryotic microorganisms. Denaturing gradient gel electrophoresis (DGGE) and sequencing analysis revealed that plastisphere microbial communities on PET fragments varied both with season and location and comprised of bacteria belonging to Bacteroidetes, Proteobacteria, Cyanobacteria and members of the eukaryotes Bacillariophyceae and Phaeophyceae. Polymers sampled from the sea surface mainly comprised polyethylene, polystyrene and polypropylene particles. Variation within plastisphere communities on different polymer types was observed, but communities were primarily dominated by Cyanobacteria. This research reveals that the composition of plastisphere microbial communities in marine waters varies with season, geographical location and plastic substrate type. PMID:25109340

  14. Diel trophic structuring of seagrass bed fish assemblages in the Wakatobi Marine National Park, Indonesia

    NASA Astrophysics Data System (ADS)

    Unsworth, Richard K. F.; Wylie, Elizabeth; Smith, David J.; Bell, James J.

    2007-03-01

    The faunal communities of seagrass beds throughout SE Asia are highly threatened by continued overexploitation, yet their ecology is poorly understood. Developing a greater understanding of the faunal linkages between seagrass beds and associated coastal habitats can facilitate more informed ecosystem level management. The present study used beach seine netting to sample seagrass bed fish assemblages in the Wakatobi Marine National Park, Indonesia, to investigate diel migrations of fish into and out of seagrass beds. These fish assemblages were found to be diverse relative to other studies within the region, with many species being economically important to local subsistence fisheries. The abundance, species richness and trophic structure of these fish assemblages changed with time of day indicating that fish populations are in a dynamic state. Mean fish abundance increased by ≈45% from day to night (Day: 8.61 ± 0.13 fish 100 m -2; Night: 15.6 ± 1.4 fish 100 m -2) while mean species richness increased from 6.6 ± 1.9 per seine haul to 11.4 ± 0.2. Increasing abundance and diversity of fish at night suggests migration onto these habitats from nearby habitats such as reefs, mangroves or deep water; and/or increased activity of those fish resident within seagrass habitats. Division of species into trophic categories enabled the trophic structure of changing fish assemblages to be examined. Assemblages were dominated during both the day and night by invertebrate and fish feeders; however, a major diel change in trophic structure occurred in the abundance of omnivores. During the day omnivores were abundant, but they were replaced at night by exclusive invertebrate feeders. We therefore propose that diel changes in seagrass fish assemblages are predominantly structured by food availability, although other factors such as increased night-time shelter provision were also found to be important albeit to a much lesser extent.

  15. Welding stainless steels for structures operating at liquid helium temperature

    SciTech Connect

    Witherell, C.E.

    1980-04-18

    Superconducting magnets for fusion energy reactors require massive monolithic stainless steel weldments which must operate at extremely low temperatures under stresses approaching 100 ksi (700 MPa). A three-year study was conducted to determine the feasibility of producing heavy-section welds having usable levels of strength and toughness at 4.2/sup 0/K for fabrication of these structures in Type 304LN plate. Seven welding processes were evaluated. Test weldments in full-thickness plate were made under severe restraint to simulate that of actual structures. Type 316L filler metal was used for most welds. Welds deposited under some conditions and which solidify as primary austenite have exhibited intergranular embrittlement at 4.2/sup 0/K. This is believed to be associated with grain boundary metal carbides or carbonitrides precipitated during reheating of already deposited beads by subsequent passes. Weld deposits which solidify as primary delta ferrite appear immune. Through use of fully austenitic filler metals of low nitrogen content under controlled shielded metal arc welding conditions, and through use of filler metals solidifying as primary delta ferrite where only minimum residuals remain to room temperature, welds of Type 316L composition have been made with 4.2K yield strength matching that of Type 304LN plate and acceptable levels of soundness, ductility and toughness.

  16. Modal parameter extraction from large operating structures using ambient excitation

    SciTech Connect

    James, G.H. III; Carne, T.G.; Mayes, R.L.

    1995-12-31

    A technique called the Natural Excitation Technique or has been developed to response extract response parameters from large operational structure when subjected to random and unmeasured forces such as wind, road noise, aerodynamics, or waves. Six applications of NExT to ambient excitation testing and NExT analysis are surveyed in this paper with a minimum of technical detail. In the first application, NExT was applied to a controlled-yaw Horizontal-Axis Wind Turbine (HAWT). By controlling the yaw degree of freedom an important class of rotating coordinate system effects are reduced. A new shape extraction procedure was applied to this data set with good results. The second application was to a free-yaw HAWT. The complexity of the response has prompted further analytical studies and the development of a specialized visualization package. The third application of NExT was to a parked three-bladed Vertical-Axis Wind Turbine (VAWT) in which traditional modal testing could not excite all modes of interest. The shape extraction process used cross-correlation functions directly in a time-domain shape-fitting routine. The fourth application was to ground transportation systems. Ongoing work to improve driver and passenger comfort in tractor-trailer vehicles and to refine automobile body and tire models will use NExT. NExT has been used to process ambient vibration data for Finite Element Model correlation and is being used to study Structural Health Monitoring with ambient excitation. Shape fitting was performed using amplitude and phase information taken directly from the cross-spectra. The final application is to an offshore structure. This work is on-going, however initial studies have found a high-modal density, high noise content, and sparse data set.

  17. Energy expenditure, nutritional status, body composition and physical fitness of Royal Marines during a 6-month operational deployment in Afghanistan.

    PubMed

    Fallowfield, Joanne L; Delves, Simon K; Hill, Neil E; Cobley, Rosalyn; Brown, Pieter; Lanham-New, Susan A; Frost, Gary; Brett, Stephen J; Murphy, Kevin G; Montain, Scott J; Nicholson, Christopher; Stacey, Michael; Ardley, Christian; Shaw, Anneliese; Bentley, Conor; Wilson, Duncan R; Allsopp, Adrian J

    2014-09-14

    Understanding the nutritional demands on serving military personnel is critical to inform training schedules and dietary provision. Troops deployed to Afghanistan face austere living and working environments. Observations from the military and those reported in the British and US media indicated possible physical degradation of personnel deployed to Afghanistan. Therefore, the present study aimed to investigate the changes in body composition and nutritional status of military personnel deployed to Afghanistan and how these were related to physical fitness. In a cohort of British Royal Marines (n 249) deployed to Afghanistan for 6 months, body size and body composition were estimated from body mass, height, girth and skinfold measurements. Energy intake (EI) was estimated from food diaries and energy expenditure measured using the doubly labelled water method in a representative subgroup. Strength and aerobic fitness were assessed. The mean body mass of volunteers decreased over the first half of the deployment ( - 4·6 (sd 3·7) %), predominately reflecting fat loss. Body mass partially recovered (mean +2·2 (sd 2·9) %) between the mid- and post-deployment periods (P< 0·05). Daily EI (mean 10 590 (sd 3339) kJ) was significantly lower than the estimated daily energy expenditure (mean 15 167 (sd 1883) kJ) measured in a subgroup of volunteers. However, despite the body mass loss, aerobic fitness and strength were well maintained. Nutritional provision for British military personnel in Afghanistan appeared sufficient to maintain physical capability and micronutrient status, but providing appropriate nutrition in harsh operational environments must remain a priority.

  18. Biochemical and Structural Characterization of the Complex Agarolytic Enzyme System from the Marine Bacterium Zobellia galactanivorans*

    PubMed Central

    Hehemann, Jan-Hendrik; Correc, Gaëlle; Thomas, François; Bernard, Thomas; Barbeyron, Tristan; Jam, Murielle; Helbert, William; Michel, Gurvan; Czjzek, Mirjam

    2012-01-01

    Zobellia galactanivorans is an emerging model bacterium for the bioconversion of algal biomass. Notably, this marine Bacteroidetes possesses a complex agarolytic system comprising four β-agarases and five β-porphyranases, all belonging to the glycoside hydrolase family 16. Although β-agarases are specific for the neutral agarobiose moieties, the recently discovered β-porphyranases degrade the sulfated polymers found in various quantities in natural agars. Here, we report the biochemical and structural comparison of five β-porphyranases and β-agarases from Z. galactanivorans. The respective degradation patterns of two β-porphyranases and three β-agarases are analyzed by their action on defined hybrid oligosaccharides. In light of the high resolution crystal structures, the biochemical results allowed a detailed mapping of substrate specificities along the active site groove of the enzymes. Although PorA displays a strict requirement for C6-sulfate in the −2- and +1-binding subsites, PorB tolerates the presence of 3–6-anhydro-l-galactose in subsite −2. Both enzymes do not accept methylation of the galactose unit in the −1 subsite. The β-agarase AgaD requires at least four consecutive agarose units (DP8) and is highly intolerant to modifications, whereas for AgaB oligosaccharides containing C6-sulfate groups at the −4, +1, and +3 positions are still degraded. Together with a transcriptional analysis of the expression of these enzymes, the structural and biochemical results allow proposition of a model scheme for the agarolytic system of Z. galactanivorans. PMID:22778272

  19. Analysis of radiation exposure, 2nd Marine Corps Provisional Atomic Exercise Brigade, Exercise Desert Rock V, Operation Upshot-Knothole. Technical report

    SciTech Connect

    Frank, G.; Weitz, R.; Goetz, J.; Klemm, J.; Schweizer, T.

    1983-02-05

    The radiation dose to Marine Brigade participants in Exercise Desert Rock V (Operation Upshot-Knothole, 1953) is reconstructed for each major brigade element. The exercise was centered around Shot Badger, from which almost all of the radiation dose resulted. Calculations and limited film badge dosimetry indicate typical doses of 3 to 4 rem for brigade personnel; however, some personnel of one battalion exceeded the 6 rem dose limit during an aborted maneuver.

  20. Experience gained from using water and steam for bringing the operation of aircraft- and marine-derivative gas-turbine engines in compliance with environmental standards

    NASA Astrophysics Data System (ADS)

    Datsenko, V. V.; Zeigarnik, Yu. A.; Kosoi, A. S.

    2014-04-01

    Practical experience gained from using water and steam admission into the combustion chambers of aircraft- and marine-derivative gas turbines for bringing their operation in compliance with the requirements of environmental standards is described. The design and schematic modifications of combustion chambers and fuel system through which this goal is achieved are considered. The results obtained from industrial and rig tests of combustion chambers fitted with water or steam admission systems are presented.

  1. Propagule supply controls grazer community structure and primary production in a benthic marine ecosystem

    PubMed Central

    Lee, Sarah C.; Bruno, John F.

    2009-01-01

    Early theories of species diversity proposed that communities at equilibrium are saturated with species. However, experiments in plant communities suggest that many communities are unsaturated and species richness can be increased by adding propagules of new species. We experimentally tested for community saturation and measured the effects of propagule supply on community structure in a benthic marine system. We manipulated propagule supply (arrival of individuals of numerous species) of mobile grazers in experimental mesocosms over multiple generations and, unlike previous tests, we examined the cascading effects of propagule supply on prey (macroalgae) biomass. We found little evidence for saturation, despite the absence of processes such as disturbance and predation that are thought to alleviate saturation in nature. Increasing propagule supply increased the total number of species and made rare species more abundant. Perhaps surprisingly, given the strong effect of propagule supply on species richness, supply-related changes in body size and composition suggest that competitive interactions remained important. Grazer supply also had strong cascading effects on primary production, possibly because of dietary complementarity modified by territorial behavior. Our results indicate that propagule supply can directly influence the diversity and composition of communities of mobile animals. Furthermore, the supply of consumer propagules can have strong indirect effects on prey and fundamental ecosystem properties. PMID:19359487

  2. Structures, biological activities and phylogenetic relationships of terpenoids from marine ciliates of the genus Euplotes.

    PubMed

    Guella, Graziano; Skropeta, Danielle; Di Giuseppe, Graziano; Dini, Fernando

    2010-07-08

    In the last two decades, large scale axenic cell cultures of the marine species comprising the family Euplotidae have resulted in the isolation of several new classes of terpenoids with unprecedented carbon skeletons including the (i) euplotins, highly strained acetylated sesquiterpene hemiacetals; (ii) raikovenals, built on the bicyclo[3.2.0]heptane ring system; (iii) rarisetenolides and focardins containing an octahydroazulene moiety; and (iv) vannusals, with a unique C30 backbone. Their complex structures have been elucidated through a combination of nuclear magnetic resonance spectroscopy, mass spectrometry, molecular mechanics and quantum chemical calculations. Despite the limited number of biosynthetic experiments having been performed, the large diversity of ciliate terpenoids has facilitated the proposal of biosynthetic pathways whereby they are produced from classical linear precursors. Herein, the similarities and differences emerging from the comparison of the classical chemotaxonomy approach based on secondary metabolites, with species phylogenesis based on genetic descriptors (SSU-rDNA), will be discussed. Results on the interesting ecological and biological properties of ciliate terpenoids are also reported.

  3. Marine bacterial community structure resilience to changes in protist predation under phytoplankton bloom conditions.

    PubMed

    Baltar, Federico; Palovaara, Joakim; Unrein, Fernando; Catala, Philippe; Horňák, Karel; Šimek, Karel; Vaqué, Dolors; Massana, Ramon; Gasol, Josep M; Pinhassi, Jarone

    2016-03-01

    To test whether protist grazing selectively affects the composition of aquatic bacterial communities, we combined high-throughput sequencing to determine bacterial community composition with analyses of grazing rates, protist and bacterial abundances and bacterial cell sizes and physiological states in a mesocosm experiment in which nutrients were added to stimulate a phytoplankton bloom. A large variability was observed in the abundances of bacteria (from 0.7 to 2.4 × 10(6) cells per ml), heterotrophic nanoflagellates (from 0.063 to 2.7 × 10(4) cells per ml) and ciliates (from 100 to 3000 cells per l) during the experiment (∼3-, 45- and 30-fold, respectively), as well as in bulk grazing rates (from 1 to 13 × 10(6) bacteria per ml per day) and bacterial production (from 3 to 379 μg per C l per day) (1 and 2 orders of magnitude, respectively). However, these strong changes in predation pressure did not induce comparable responses in bacterial community composition, indicating that bacterial community structure was resilient to changes in protist predation pressure. Overall, our results indicate that peaks in protist predation (at least those associated with phytoplankton blooms) do not necessarily trigger substantial changes in the composition of coastal marine bacterioplankton communities.

  4. The species-rich assemblages of tintinnids (marine planktonic protists) are structured by mouth size.

    PubMed

    Dolan, John R; Landry, Michael R; Ritchie, Mark E

    2013-06-01

    Many microbial taxa in the marine plankton appear super-saturated in species richness. Here, we provide a partial explanation by analyzing how species are organized, species packing, in terms of both taxonomy and morphology. We focused on a well-studied group, tintinnid ciliates of the microzooplankton, in which feeding ecology is closely linked to morphology. Populations in three distinct systems were examined: an Eastern Mediterranean Gyre, a Western Mediterranean Gyre and the California Current. We found that species abundance distributions exhibited the long-tailed, log distributions typical of most natural assemblages of microbial and other organisms. In contrast, grouping in oral size-classes, which corresponds with prey-size exploited, revealed a geometric distribution consistent with a dominant role of a single resource in structuring an assemblage. The number of species found in a particular oral size-class increases with the numerical importance of the size-class in the overall population. We suggest that high species diversity reflects the fact that accompanying each dominant species are many ecologically similar species, presumably able to replace the dominant species, at least with regard to the size of prey exploited. Such redundancy suggests that species diversity greatly exceeds ecological diversity in the plankton.

  5. Structures, Biological Activities and Phylogenetic Relationships of Terpenoids from Marine Ciliates of the Genus Euplotes

    PubMed Central

    Guella, Graziano; Skropeta, Danielle; Di Giuseppe, Graziano; Dini, Fernando

    2010-01-01

    In the last two decades, large scale axenic cell cultures of the marine species comprising the family Euplotidae have resulted in the isolation of several new classes of terpenoids with unprecedented carbon skeletons including the (i) euplotins, highly strained acetylated sesquiterpene hemiacetals; (ii) raikovenals, built on the bicyclo[3.2.0]heptane ring system; (iii) rarisetenolides and focardins containing an octahydroazulene moiety; and (iv) vannusals, with a unique C30 backbone. Their complex structures have been elucidated through a combination of nuclear magnetic resonance spectroscopy, mass spectrometry, molecular mechanics and quantum chemical calculations. Despite the limited number of biosynthetic experiments having been performed, the large diversity of ciliate terpenoids has facilitated the proposal of biosynthetic pathways whereby they are produced from classical linear precursors. Herein, the similarities and differences emerging from the comparison of the classical chemotaxonomy approach based on secondary metabolites, with species phylogenesis based on genetic descriptors (SSU-rDNA), will be discussed. Results on the interesting ecological and biological properties of ciliate terpenoids are also reported. PMID:20714425

  6. The Structure-Activity Relationship between Marine Algae Polysaccharides and Anti-Complement Activity

    PubMed Central

    Jin, Weihua; Zhang, Wenjing; Liang, Hongze; Zhang, Quanbin

    2015-01-01

    In this study, 33 different polysaccharides were prepared to investigate the structure-activity relationships between the polysaccharides, mainly from marine algae, and anti-complement activity in the classical pathway. Factors considered included extraction methods, fractionations, molecular weight, molar ratio of galactose to fucose, sulfate, uronic acid (UA) content, linkage, branching, and the type of monosaccharide. It was shown that the larger the molecular weights, the better the activities. The molar ratio of galactose (Gal) to fucose (Fuc) was a positive factor at a concentration lower than 10 µg/mL, while it had no effect at a concentration more than 10 µg/mL. In addition, sulfate was necessary; however, the sulfate content, the sulfate pattern, linkage and branching had no effect at a concentration of more than 10 µg/mL. Moreover, the type of monosaccharide had no effect. Laminaran and UA fractions had no activity; however, they could reduce the activity by decreasing the effective concentration of the active composition when they were mixed with the active compositions. The effect of the extraction methods could not be determined. Finally, it was observed that sulfated galactofucan showed good anti-complement activity after separation. PMID:26712768

  7. Climate change alters the structure of arctic marine food webs due to poleward shifts of boreal generalists.

    PubMed

    Kortsch, Susanne; Primicerio, Raul; Fossheim, Maria; Dolgov, Andrey V; Aschan, Michaela

    2015-09-01

    Climate-driven poleward shifts, leading to changes in species composition and relative abundances, have been recently documented in the Arctic. Among the fastest moving species are boreal generalist fish which are expected to affect arctic marine food web structure and ecosystem functioning substantially. Here, we address structural changes at the food web level induced by poleward shifts via topological network analysis of highly resolved boreal and arctic food webs of the Barents Sea. We detected considerable differences in structural properties and link configuration between the boreal and the arctic food webs, the latter being more modular and less connected. We found that a main characteristic of the boreal fish moving poleward into the arctic region of the Barents Sea is high generalism, a property that increases connectance and reduces modularity in the arctic marine food web. Our results reveal that habitats form natural boundaries for food web modules, and that generalists play an important functional role in coupling pelagic and benthic modules. We posit that these habitat couplers have the potential to promote the transfer of energy and matter between habitats, but also the spread of pertubations, thereby changing arctic marine food web structure considerably with implications for ecosystem dynamics and functioning.

  8. Climate change alters the structure of arctic marine food webs due to poleward shifts of boreal generalists.

    PubMed

    Kortsch, Susanne; Primicerio, Raul; Fossheim, Maria; Dolgov, Andrey V; Aschan, Michaela

    2015-09-01

    Climate-driven poleward shifts, leading to changes in species composition and relative abundances, have been recently documented in the Arctic. Among the fastest moving species are boreal generalist fish which are expected to affect arctic marine food web structure and ecosystem functioning substantially. Here, we address structural changes at the food web level induced by poleward shifts via topological network analysis of highly resolved boreal and arctic food webs of the Barents Sea. We detected considerable differences in structural properties and link configuration between the boreal and the arctic food webs, the latter being more modular and less connected. We found that a main characteristic of the boreal fish moving poleward into the arctic region of the Barents Sea is high generalism, a property that increases connectance and reduces modularity in the arctic marine food web. Our results reveal that habitats form natural boundaries for food web modules, and that generalists play an important functional role in coupling pelagic and benthic modules. We posit that these habitat couplers have the potential to promote the transfer of energy and matter between habitats, but also the spread of pertubations, thereby changing arctic marine food web structure considerably with implications for ecosystem dynamics and functioning. PMID:26336179

  9. Climate change alters the structure of arctic marine food webs due to poleward shifts of boreal generalists

    PubMed Central

    Kortsch, Susanne; Primicerio, Raul; Fossheim, Maria; Dolgov, Andrey V.; Aschan, Michaela

    2015-01-01

    Climate-driven poleward shifts, leading to changes in species composition and relative abundances, have been recently documented in the Arctic. Among the fastest moving species are boreal generalist fish which are expected to affect arctic marine food web structure and ecosystem functioning substantially. Here, we address structural changes at the food web level induced by poleward shifts via topological network analysis of highly resolved boreal and arctic food webs of the Barents Sea. We detected considerable differences in structural properties and link configuration between the boreal and the arctic food webs, the latter being more modular and less connected. We found that a main characteristic of the boreal fish moving poleward into the arctic region of the Barents Sea is high generalism, a property that increases connectance and reduces modularity in the arctic marine food web. Our results reveal that habitats form natural boundaries for food web modules, and that generalists play an important functional role in coupling pelagic and benthic modules. We posit that these habitat couplers have the potential to promote the transfer of energy and matter between habitats, but also the spread of pertubations, thereby changing arctic marine food web structure considerably with implications for ecosystem dynamics and functioning. PMID:26336179

  10. Isolation and structure determination of obyanamide, a novel cytotoxic cyclic depsipeptide from the marine cyanobacterium Lyngbya confervoides.

    PubMed

    Williams, Philip G; Yoshida, Wesley Y; Moore, Richard E; Paul, Valerie J

    2002-01-01

    Obyanamide (1) was isolated from a variety of the marine cyanobacterium Lyngbya confervoides collected in Saipan, Commonwealth of the Northern Mariana Islands. Gross structure elucidation of this novel cyclic depsipeptide relied on extensive application of 2D NMR techniques. The absolute stereochemistry was deduced by chiral chromatography of the hydrolysis products and comparison with authentic and synthetic standards. Obyanamide (1) was cytotoxic against KB cells with an IC(50) of 0.58 microg/mL.

  11. Horizontal structure of marine boundary layer clouds from centimeter to kilometer scales

    NASA Astrophysics Data System (ADS)

    Davis, Anthony B.; Marshak, Alexander; Gerber, H.; Wiscombe, Warren J.

    1999-03-01

    to those of passive scalars in fully developed turbulence. This is indicative of a remarkable similarity in the micro-physical and macrophysical processes that determine cloud structure in the marine boundary layer at very remote locales, especially since the particular SOCEX cloud system investigated here was rather atypical. Interesting differences are also found: in the scaling ranges on the one hand, and in higher-order moments on the other hand. Finally, we discuss cloud-radiative effects of the large- and small-scale variabilities.

  12. On the relation of structure, perception and activity in marine planktonic copepods

    NASA Astrophysics Data System (ADS)

    Paffenhöfer, G.-A.

    1998-06-01

    The goal of this paper is to illustrate how in juvenile and adult subtropical marine planktonic copepods various structures or morphological features function in concert to detect prey and predators. Without motion by either food (e.g. flagellate, ciliate) or feeder (e.g. feeding current) or both (e.g. Acartia spp. and ciliate) few feeding activities will occur. Through motion a food particle is either perceived mechanically or chemically to be followed by appendage activities. A combination of mechano- and chemosensors on their cephalic appendages (and probably on other extremities) serve juvenile and adult copepods to perceive signals. Perception is followed by alternation of motion and sensing by these appendages, or by no motion at all (e.g. behavior by Eucalanus pileatus when perceiving a weak hydrodynamic signal). Non-moving and extended sensors (setae) are best suited for mechanical/hydrodynamic perceptions in those copepods which lack a feeding current and hardly move. Numerous mechanosensors arranged in three dimensions on the first antennae (A1) are required to perceive the precise location of moving prey at a distance (e.g. Oithona feeding on ciliates but also sinking particles). Those copepods which create a weak or intermittent feeding current can supplement nutrition with carnivory, which requires perception by the A1 (e.g. Centropages velificatus adults). These two groups require, in addition to perception of prey motion/location, rapid motion by their appendages (A1, second maxillae M2, etc.) to capture the prey. Nauplii, which satiate at far lower food levels than adults, have one of several means of food acquisition: encounter through forward motion, perception through feeding current, or perception of a moving food particle. The nearly continuous motion of most calanoid nauplii makes them vulnerable to predation because all three pairs of appendages are usually moving. Opposite are nauplii of cyclopoid and a few calanoid species which move only

  13. Marine bacterioplankton biomass, activity and community structure in the vicinity of Antarctic icebergs

    NASA Astrophysics Data System (ADS)

    Murray, Alison E.; Peng, Vivian; Tyler, Charlotte; Wagh, Protima

    2011-06-01

    We studied marine bacterioplankton in the Scotia Sea in June 2008 and in the northwest Weddell Sea in March to mid April 2009 in waters proximal to three free-drifting icebergs (SS-1, A-43k, and C-18a), in a region with a high density of smaller icebergs (iceberg alley), and at stations that were upstream of the iceberg trajectories designated as far-field reference sites that were between 16-75 km away. Hydrographic parameters were used to define water masses in which comparisons between bacterioplankton-associated characteristics (abundance, leucine incorporation into protein, aminopeptidase activities and community structure) within and between water masses could be made. Early winter Scotia Sea bacterioplankton had low levels of cells and low heterotrophic production rates in the upper 50 m. Influences of the icebergs on bacterioplankton at this time of year were minimal, if not deleterious, as we found lower levels of heterotrophic production near A-43k in comparison to stations >16 km away. Additionally, the results point to small but significant differences in cell abundance, heterotrophic production, and community structure between the two icebergs studied. These icebergs differed greatly in size and the findings suggest that the larger iceberg had a greater effect. In the NW Weddell Sea in March-mid April bacterioplankton were twice as abundant and had heterotrophic productions rates that were 8-fold higher than what we determined in the Scotia Sea, though levels were still quite low, which is typical for autumn. We did not detect direct iceberg-related influences on the bacterioplankton characteristics studied here. Clues to understanding bacterioplankton responses may lie in the details of community structure, as there were some significant differences in community structure in the winter water and underlying upper circumpolar deep-water masses between stations occupied close to C-18a and at stations 18 km away (i.e. Polaribacter and Pelagibacter

  14. Structures and comparative characterization of biosynthetic gene clusters for cyanosporasides, enediyne-derived natural products from marine actinomycetes.

    PubMed

    Lane, Amy L; Nam, Sang-Jip; Fukuda, Takashi; Yamanaka, Kazuya; Kauffman, Christopher A; Jensen, Paul R; Fenical, William; Moore, Bradley S

    2013-03-20

    Cyanosporasides are marine bacterial natural products containing a chlorinated cyclopenta[a]indene core of suspected enediyne polyketide biosynthetic origin. Herein, we report the isolation and characterization of novel cyanosporasides C-F (3-6) from the marine actinomycetes Salinispora pacifica CNS-143 and Streptomyces sp. CNT-179, highlighted by the unprecedented C-2' N-acetylcysteamine functionalized hexose group of 6. Cloning, sequencing, and mutagenesis of homologous ~50 kb cyanosporaside biosynthetic gene clusters from both bacteria afforded the first genetic evidence supporting cyanosporaside's enediyne, and thereby p-benzyne biradical, biosynthetic origin and revealed the molecular basis for nitrile and glycosyl functionalization. This study provides new opportunities for bioengineering of enediyne derivatives and expands the structural diversity afforded by enediyne gene clusters.

  15. Structures and comparative characterization of biosynthetic gene clusters for cyanosporasides, enediyne-derived natural products from marine actinomycetes

    PubMed Central

    Lane, Amy L.; Nam, Sang Jip; Fukuda, Takashi; Yamanaka, Kazuya; Kauffman, Christopher A.; Jensen, Paul R.; Fenical, William; Moore, Bradley S.

    2013-01-01

    Cyanosporasides are marine bacterial natural products containing a chlorinated cyclopenta[a]indene core of suspected enediyne polyketide biosynthetic origin. Herein, we report the isolation and characterization of novel cyanosporasides C–F (3–6) from the marine actinomycetes “Salinispora pacifica” CNS-143 and Streptomyces sp. CNT-179, highlighted by the unprecedented C-2' N-acetylcysteamine functionalized hexose group of 6. Cloning, sequencing, and mutagenesis of homologous ~50 kb cyanosporaside biosynthetic gene clusters from both bacteria afforded the first genetic evidence supporting cyanosporaside's enediyne, and thereby p-benzyne biradical, biosynthetic origin and revealed the molecular basis for nitrile and glycosyl functionalization. This study provides new opportunities for bioengineering of enediyne derivatives and expands the structural diversity afforded by enediyne gene clusters. PMID:23458364

  16. Targeting apoptosis pathways by natural compounds in cancer: marine compounds as lead structures and chemical tools for cancer therapy.

    PubMed

    von Schwarzenberg, Karin; Vollmar, Angelika M

    2013-05-28

    Natural compounds derived from marine organisms have shown a wide variety of anti-tumor effects and a lot of attention has been drawn to further development of the isolated compounds. A vast quantity of individual chemical structures from different organisms has shown a variety of apoptosis inducing mechanisms in a variety of tumor cells. The bis-steroidal cephalostatin 1 for example, induces apoptosis via activation of caspases whereas the polyketide discodermolide inhibits cell growth by binding to and stabilizing microtubule and salisporamide A, the product of an actinobacterial strain, is an inhibitor of the proteasome. This great variety of mechanisms of action can help to overcome the multitude of resistances exhibited by different tumor specimens. Products from marine organisms and their synthetic derivates are therefore an important source for new therapeutics for single agent or combined therapy with other chemotherapeutics to support the struggle against cancer.

  17. Carotenoids in Marine Animals

    PubMed Central

    Maoka, Takashi

    2011-01-01

    Marine animals contain various carotenoids that show structural diversity. These marine animals accumulate carotenoids from foods such as algae and other animals and modify them through metabolic reactions. Many of the carotenoids present in marine animals are metabolites of β-carotene, fucoxanthin, peridinin, diatoxanthin, alloxanthin, and astaxanthin, etc. Carotenoids found in these animals provide the food chain as well as metabolic pathways. In the present review, I will describe marine animal carotenoids from natural product chemistry, metabolism, food chain, and chemosystematic viewpoints, and also describe new structural carotenoids isolated from marine animals over the last decade. PMID:21566799

  18. Life-Style and Genome Structure of Marine Pseudoalteromonas Siphovirus B8b Isolated from the Northwestern Mediterranean Sea

    SciTech Connect

    Lara, Elena; Holmfeldt, Karin; Solonenko, Natalie; Sà, Elisabet Laia; Ignacio-Espinoza, J. Cesar; Cornejo-Castillo, Francisco M.; Verberkmoes, Nathan C.; Vaqué, Dolors; Sullivan, Matthew B.; Acinas, Silvia G.; Kellogg, Christina A.

    2015-01-14

    Marine viruses (phages) alter bacterial diversity and evolution with impacts on marine biogeochemical cycles, and yet few well-developed model systems limit opportunities for hypothesis testing. We isolate phage B8b from the Mediterranean Sea using Pseudoalteromonas sp. QC-44 as a host and characterize it using myriad techniques. Morphologically, phage B8b was classified as a member of the Siphoviridae family. One-step growth analyses showed that this siphovirus had a latent period of 70 min and released 172 new viral particles per cell. In the host range analysis against 89 bacterial host strains revealed that phage B8b infected 3 Pseudoalteromonas strains (52 tested, >99.9% 16S rRNA gene nucleotide identity) and 1 non-Pseudoaltermonas strain belonging to Alteromonas sp. (37 strains from 6 genera tested), which helps bound the phylogenetic distance possible in a phage-mediated horizontal gene transfer event. The Pseudoalteromonas phage B8b genome size was 42.7 kb, with clear structural and replication modules where the former were delineated leveraging identification of 16 structural genes by virion structural proteomics, only 4 of which had any similarity to known structural proteins. In nature, this phage was common in coastal marine environments in both photic and aphotic layers (found in 26.5% of available viral metagenomes), but not abundant in any sample (average per sample abundance was 0.65% of the reads). Together these data improve our understanding of siphoviruses in nature, and provide foundational information for a new 'rare virosphere' phage-host model system.

  19. Life-Style and Genome Structure of Marine Pseudoalteromonas Siphovirus B8b Isolated from the Northwestern Mediterranean Sea

    DOE PAGES

    Lara, Elena; Holmfeldt, Karin; Solonenko, Natalie; Sà, Elisabet Laia; Ignacio-Espinoza, J. Cesar; Cornejo-Castillo, Francisco M.; Verberkmoes, Nathan C.; Vaqué, Dolors; Sullivan, Matthew B.; Acinas, Silvia G.; et al

    2015-01-14

    Marine viruses (phages) alter bacterial diversity and evolution with impacts on marine biogeochemical cycles, and yet few well-developed model systems limit opportunities for hypothesis testing. We isolate phage B8b from the Mediterranean Sea using Pseudoalteromonas sp. QC-44 as a host and characterize it using myriad techniques. Morphologically, phage B8b was classified as a member of the Siphoviridae family. One-step growth analyses showed that this siphovirus had a latent period of 70 min and released 172 new viral particles per cell. In the host range analysis against 89 bacterial host strains revealed that phage B8b infected 3 Pseudoalteromonas strains (52 tested,more » >99.9% 16S rRNA gene nucleotide identity) and 1 non-Pseudoaltermonas strain belonging to Alteromonas sp. (37 strains from 6 genera tested), which helps bound the phylogenetic distance possible in a phage-mediated horizontal gene transfer event. The Pseudoalteromonas phage B8b genome size was 42.7 kb, with clear structural and replication modules where the former were delineated leveraging identification of 16 structural genes by virion structural proteomics, only 4 of which had any similarity to known structural proteins. In nature, this phage was common in coastal marine environments in both photic and aphotic layers (found in 26.5% of available viral metagenomes), but not abundant in any sample (average per sample abundance was 0.65% of the reads). Together these data improve our understanding of siphoviruses in nature, and provide foundational information for a new 'rare virosphere' phage-host model system.« less

  20. Life-style and genome structure of marine Pseudoalteromonas siphovirus B8b isolated from the northwestern Mediterranean Sea.

    PubMed

    Lara, Elena; Holmfeldt, Karin; Solonenko, Natalie; Sà, Elisabet Laia; Ignacio-Espinoza, J Cesar; Cornejo-Castillo, Francisco M; Verberkmoes, Nathan C; Vaqué, Dolors; Sullivan, Matthew B; Acinas, Silvia G

    2015-01-01

    Marine viruses (phages) alter bacterial diversity and evolution with impacts on marine biogeochemical cycles, and yet few well-developed model systems limit opportunities for hypothesis testing. Here we isolate phage B8b from the Mediterranean Sea using Pseudoalteromonas sp. QC-44 as a host and characterize it using myriad techniques. Morphologically, phage B8b was classified as a member of the Siphoviridae family. One-step growth analyses showed that this siphovirus had a latent period of 70 min and released 172 new viral particles per cell. Host range analysis against 89 bacterial host strains revealed that phage B8b infected 3 Pseudoalteromonas strains (52 tested, >99.9% 16S rRNA gene nucleotide identity) and 1 non-Pseudoaltermonas strain belonging to Alteromonas sp. (37 strains from 6 genera tested), which helps bound the phylogenetic distance possible in a phage-mediated horizontal gene transfer event. The Pseudoalteromonas phage B8b genome size was 42.7 kb, with clear structural and replication modules where the former were delineated leveraging identification of 16 structural genes by virion structural proteomics, only 4 of which had any similarity to known structural proteins. In nature, this phage was common in coastal marine environments in both photic and aphotic layers (found in 26.5% of available viral metagenomes), but not abundant in any sample (average per sample abundance was 0.65% of the reads). Together these data improve our understanding of siphoviruses in nature, and provide foundational information for a new 'rare virosphere' phage-host model system. PMID:25587991

  1. Life-Style and Genome Structure of Marine Pseudoalteromonas Siphovirus B8b Isolated from the Northwestern Mediterranean Sea

    PubMed Central

    Lara, Elena; Holmfeldt, Karin; Solonenko, Natalie; Sà, Elisabet Laia; Ignacio-Espinoza, J. Cesar; Cornejo-Castillo, Francisco M.; Verberkmoes, Nathan C.; Vaqué, Dolors; Sullivan, Matthew B.; Acinas, Silvia G.

    2015-01-01

    Marine viruses (phages) alter bacterial diversity and evolution with impacts on marine biogeochemical cycles, and yet few well-developed model systems limit opportunities for hypothesis testing. Here we isolate phage B8b from the Mediterranean Sea using Pseudoalteromonas sp. QC-44 as a host and characterize it using myriad techniques. Morphologically, phage B8b was classified as a member of the Siphoviridae family. One-step growth analyses showed that this siphovirus had a latent period of 70 min and released 172 new viral particles per cell. Host range analysis against 89 bacterial host strains revealed that phage B8b infected 3 Pseudoalteromonas strains (52 tested, >99.9% 16S rRNA gene nucleotide identity) and 1 non-Pseudoaltermonas strain belonging to Alteromonas sp. (37 strains from 6 genera tested), which helps bound the phylogenetic distance possible in a phage-mediated horizontal gene transfer event. The Pseudoalteromonas phage B8b genome size was 42.7 kb, with clear structural and replication modules where the former were delineated leveraging identification of 16 structural genes by virion structural proteomics, only 4 of which had any similarity to known structural proteins. In nature, this phage was common in coastal marine environments in both photic and aphotic layers (found in 26.5% of available viral metagenomes), but not abundant in any sample (average per sample abundance was 0.65% of the reads). Together these data improve our understanding of siphoviruses in nature, and provide foundational information for a new ‘rare virosphere’ phage–host model system. PMID:25587991

  2. Protection of Marine Mammals.

    PubMed

    Knoll, Michaela; Ciaccia, Ettore; Dekeling, René; Kvadsheim, Petter; Liddell, Kate; Gunnarsson, Stig-Lennart; Ludwig, Stefan; Nissen, Ivor; Lorenzen, Dirk; Kreimeyer, Roman; Pavan, Gianni; Meneghetti, Nello; Nordlund, Nina; Benders, Frank; van der Zwan, Timo; van Zon, Tim; Fraser, Leanne; Johansson, Torbjörn; Garmelius, Martin

    2016-01-01

    Within the European Defense Agency (EDA), the Protection of Marine Mammals (PoMM) project, a comprehensive common marine mammal database essential for risk mitigation tools, was established. The database, built on an extensive dataset collection with the focus on areas of operational interest for European navies, consists of annual and seasonal distribution and density maps, random and systematic sightings, an encyclopedia providing knowledge on the characteristics of 126 marine mammal species, data on marine mammal protection areas, and audio information including numerous examples of various vocalizations. Special investigations on marine mammal acoustics were carried out to improve the detection and classification capabilities.

  3. Protection of Marine Mammals.

    PubMed

    Knoll, Michaela; Ciaccia, Ettore; Dekeling, René; Kvadsheim, Petter; Liddell, Kate; Gunnarsson, Stig-Lennart; Ludwig, Stefan; Nissen, Ivor; Lorenzen, Dirk; Kreimeyer, Roman; Pavan, Gianni; Meneghetti, Nello; Nordlund, Nina; Benders, Frank; van der Zwan, Timo; van Zon, Tim; Fraser, Leanne; Johansson, Torbjörn; Garmelius, Martin

    2016-01-01

    Within the European Defense Agency (EDA), the Protection of Marine Mammals (PoMM) project, a comprehensive common marine mammal database essential for risk mitigation tools, was established. The database, built on an extensive dataset collection with the focus on areas of operational interest for European navies, consists of annual and seasonal distribution and density maps, random and systematic sightings, an encyclopedia providing knowledge on the characteristics of 126 marine mammal species, data on marine mammal protection areas, and audio information including numerous examples of various vocalizations. Special investigations on marine mammal acoustics were carried out to improve the detection and classification capabilities. PMID:26611003

  4. Life in a temperate Polar sea: a unique taphonomic window on the structure of a Late Cretaceous Arctic marine ecosystem

    PubMed Central

    Chin, Karen; Bloch, John; Sweet, Arthur; Tweet, Justin; Eberle, Jaelyn; Cumbaa, Stephen; Witkowski, Jakub; Harwood, David

    2008-01-01

    As the earth faces a warming climate, the rock record reminds us that comparable climatic scenarios have occurred before. In the Late Cretaceous, Arctic marine organisms were not subject to frigid temperatures but still contended with seasonal extremes in photoperiod. Here, we describe an unusual fossil assemblage from Devon Island, Arctic Canada, that offers a snapshot of a ca 75 Myr ago marine palaeoecosystem adapted to such conditions. Thick siliceous biogenic sediments and glaucony sands reveal remarkably persistent high primary productivity along a high-latitude Late Cretaceous coastline. Abundant fossil faeces demonstrate that this planktonic bounty supported benthic invertebrates and large, possibly seasonal, vertebrates in short food chains. These ancient organisms filled trophic roles comparable to those of extant Arctic species, but there were fundamental differences in resource dynamics. Whereas most of the modern Arctic is oligotrophic and structured by resources from melting sea ice, we suggest that forested terrestrial landscapes helped support the ancient marine community through high levels of terrigenous organic input. PMID:18713718

  5. Contrasts in genetic structure and historical demography of marine and riverine populations of Atherina at similar geographical scales

    NASA Astrophysics Data System (ADS)

    Francisco, Sara M.; Cabral, Henrique; Vieira, Maria Natividade; Almada, Vítor C.

    2006-09-01

    In this paper, we compare the genetic structure and the historical demography of two populations of the sand smelt Atherina boyeri from the rivers Tagus and Mondego (Portugal) with two groups of samples of the closely related marine Atherina presbyter collected on the shore at comparable latitudes. A. presbyter is a pelagic marine inshore fish, while A. boyeri is typically found in coastal lagoons, estuaries and freshwaters bodies. Analysis of mtDNA control region sequences showed that the marine A. presbyter did not display signs of genetic differentiation between sites some hundreds of kilometers apart. On the contrary, A. boyeri showed clear differences between populations. The populations of A. boyeri showed a much lower genetic diversity and younger coalescence times when compared with A. presbyter. We suggest that these differences reflect the interplay between differences in ecology between the two species and the historical impact of the glaciations. While A. presbyter likely moved to the south evading the cold periods, A. boyeri probably went extinct and its populations in Western Europe are recent recolonizations from western Mediterranean refugia.

  6. 30 CFR 780.12 - Operation plan: Existing structures.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... Section 780.12 Mineral Resources OFFICE OF SURFACE MINING RECLAMATION AND ENFORCEMENT, DEPARTMENT OF THE INTERIOR SURFACE COAL MINING AND RECLAMATION OPERATIONS PERMITS AND COAL EXPLORATION SYSTEMS UNDER REGULATORY PROGRAMS SURFACE MINING PERMIT APPLICATIONS-MINIMUM REQUIREMENTS FOR RECLAMATION AND...

  7. 30 CFR 784.12 - Operation plan: Existing structures.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... Section 784.12 Mineral Resources OFFICE OF SURFACE MINING RECLAMATION AND ENFORCEMENT, DEPARTMENT OF THE INTERIOR SURFACE COAL MINING AND RECLAMATION OPERATIONS PERMITS AND COAL EXPLORATION SYSTEMS UNDER REGULATORY PROGRAMS UNDERGROUND MINING PERMIT APPLICATIONS-MINIMUM REQUIREMENTS FOR RECLAMATION AND...

  8. The operational recognition of supercell thunderstorm environments and storm structures

    SciTech Connect

    Moller, A.R.; Doswell, C.A. III; Foster, M.P.; Woodall, G.R. ||

    1994-09-01

    Supercell thunderstorm forecasting and detection is discussed, in light of the disastrous weather events that often accompany supercells. Operational forecasters in the National Weather Service (NWS) can employ conceptual models of the supercell, and of the meteorological environments that produce supercells, to make operational decisions scientifically. The presence of a mesocyclone is common to all supercells, but operational recognition of supercells is clouded by the various radar and visual characteristics they exhibit. The notion of a supercell spectrum is introduced in an effort to guide improved operational detection of supercells. An important part of recognition is the anticipation of what potential exists for supercells in the prestorm environment. Current scientific understanding suggests that cyclonic updraft rotation originates from streamwise vorticity (in the storm`s reference frame) within its environment. A discussion of how storm-relative helicity can be used to evaluate supercell potential is given. An actual supercell event is employed to illustrate the usefulness of conceptual model visualization when issuing statements and warnings for supercell storms. Finally, supercell detection strategies using the advanced datasets from the modernized and restructured NWS are described.

  9. Memory Operations and Structures in Sentence Comprehension: Evidence from Ellipsis

    ERIC Educational Resources Information Center

    Martin, Andrea Eyleen

    2010-01-01

    Natural language often contains dependencies that span words, phrases, or even sentences. Thus, language comprehension relies on recovering recently processed information from memory for subsequent interpretation. This dissertation investigates the memory operations that subserve dependency resolution through the lens of "verb-phrase ellipsis"…

  10. Design optimization of composite structures operating in acoustic environments

    NASA Astrophysics Data System (ADS)

    Chronopoulos, D.

    2015-10-01

    The optimal mechanical and geometric characteristics for layered composite structures subject to vibroacoustic excitations are derived. A Finite Element description coupled to Periodic Structure Theory is employed for the considered layered panel. Structures of arbitrary anisotropy as well as geometric complexity can thus be modelled by the presented approach. Damping can also be incorporated in the calculations. Initially, a numerical continuum-discrete approach for computing the sensitivity of the acoustic wave characteristics propagating within the modelled periodic composite structure is exhibited. The first- and second-order sensitivities of the acoustic transmission coefficient expressed within a Statistical Energy Analysis context are subsequently derived as a function of the computed acoustic wave characteristics. Having formulated the gradient vector as well as the Hessian matrix, the optimal mechanical and geometric characteristics satisfying the considered mass, stiffness and vibroacoustic performance criteria are sought by employing Newton's optimization method.

  11. Short-term degradation of terrestrial DOM in the coastal ocean: Implications for nutrient subsidies and marine microbial community structure

    NASA Astrophysics Data System (ADS)

    Oliver, A. A.; Tank, S. E.; Kellogg, C.

    2015-12-01

    The export of riverine dissolved organic matter (DOM) to the coastal ocean provides an important link between terrestrial and aquatic ecosystems. The coastal temperate rainforests of British Columbia contain extensive freshwater networks that export significant amounts of water and DOM to the ocean, representing significant cross-system hydrologic and biogeochemical linkages. To better understand the importance of these linkages and implications for ecosystem structure and function, we used an experimental approach to investigate the role of microbial and photodegradation transformations of DOM exported from small coastal catchments to the marine environment. At two time periods (August 2014, March 2015), stream water from the outlets of two coastal watersheds was filtered (<0.2 μm), and treated with microbial inoculums from across a salinity gradient (i.e., freshwater, estuarine, and marine). Treatments were incubated in the ocean under light and dark conditions for 8 days. At 0, 3 and 8 days, samples were analyzed for DOC, TDN, DIN, and DON. Changes in DOM composition were determined with optical characterization techniques such as absorbance (SUVA, S, Sr) and fluorescence (EEM). Microbial community response was measured using cell counts and DNA/RNA amplicon sequencing to determine changes in bacterial abundance and community composition. General patterns indicated that microbial communities from the high salinity treatment (i.e. most marine) were the most effective at utilizing freshwater DOM, especially under light conditions. In some treatments, DOM appeared as a potential source of inorganic nitrogen with corresponding shifts in microbial community composition. Incubations using inoculum from low and mid salinity levels demonstrated smaller changes, indicating that DOM exported from these streams may not be extensively utilized until exposed to higher salinity environments further from stream outlets. These results suggest a role for terrestrial sourced

  12. Use of Anthropogenic Sea Floor Structures by Australian Fur Seals: Potential Positive Ecological Impacts of Marine Industrial Development?

    PubMed Central

    Arnould, John P. Y.; Monk, Jacquomo; Ierodiaconou, Daniel; Hindell, Mark A.; Semmens, Jayson; Hoskins, Andrew J.; Costa, Daniel P.; Abernathy, Kyler; Marshall, Greg J.

    2015-01-01

    Human-induced changes to habitats can have deleterious effects on many species that occupy them. However, some species can adapt and even benefit from such modifications. Artificial reefs have long been used to provide habitat for invertebrate communities and promote local fish populations. With the increasing demand for energy resources within ocean systems, there has been an expansion of infrastructure in near-shore benthic environments which function as de facto artificial reefs. Little is known of their use by marine mammals. In this study, the influence of anthropogenic sea floor structures (pipelines, cable routes, wells and shipwrecks) on the foraging locations of 36 adult female Australian fur seals (Arctocephalus pusillus doriferus) was investigated. For 9 (25%) of the individuals, distance to anthropogenic sea floor structures was the most important factor in determining the location of intensive foraging activity. Whereas the influence of anthropogenic sea floor structures on foraging locations was not related to age and mass, it was positively related to flipper length/standard length (a factor which can affect manoeuvrability). A total of 26 (72%) individuals tracked with GPS were recorded spending time in the vicinity of structures (from <1% to >75% of the foraging trip duration) with pipelines and cable routes being the most frequented. No relationships were found between the amount of time spent frequenting anthropogenic structures and individual characteristics. More than a third (35%) of animals foraging near anthropogenic sea floor structures visited more than one type of structure. These results further highlight potentially beneficial ecological outcomes of marine industrial development. PMID:26132329

  13. Use of Anthropogenic Sea Floor Structures by Australian Fur Seals: Potential Positive Ecological Impacts of Marine Industrial Development?

    PubMed

    Arnould, John P Y; Monk, Jacquomo; Ierodiaconou, Daniel; Hindell, Mark A; Semmens, Jayson; Hoskins, Andrew J; Costa, Daniel P; Abernathy, Kyler; Marshall, Greg J

    2015-01-01

    Human-induced changes to habitats can have deleterious effects on many species that occupy them. However, some species can adapt and even benefit from such modifications. Artificial reefs have long been used to provide habitat for invertebrate communities and promote local fish populations. With the increasing demand for energy resources within ocean systems, there has been an expansion of infrastructure in near-shore benthic environments which function as de facto artificial reefs. Little is known of their use by marine mammals. In this study, the influence of anthropogenic sea floor structures (pipelines, cable routes, wells and shipwrecks) on the foraging locations of 36 adult female Australian fur seals (Arctocephalus pusillus doriferus) was investigated. For 9 (25%) of the individuals, distance to anthropogenic sea floor structures was the most important factor in determining the location of intensive foraging activity. Whereas the influence of anthropogenic sea floor structures on foraging locations was not related to age and mass, it was positively related to flipper length/standard length (a factor which can affect manoeuvrability). A total of 26 (72%) individuals tracked with GPS were recorded spending time in the vicinity of structures (from <1% to >75% of the foraging trip duration) with pipelines and cable routes being the most frequented. No relationships were found between the amount of time spent frequenting anthropogenic structures and individual characteristics. More than a third (35%) of animals foraging near anthropogenic sea floor structures visited more than one type of structure. These results further highlight potentially beneficial ecological outcomes of marine industrial development.

  14. Improved Fermi operator expansion methods for fast electronic structure calculations

    NASA Astrophysics Data System (ADS)

    Liang, WanZhen; Saravanan, Chandra; Shao, Yihan; Baer, Roi; Bell, Alexis T.; Head-Gordon, Martin

    2003-08-01

    Linear scaling algorithms based on Fermi operator expansions (FOE) have been considered significantly slower than other alternative approaches in evaluating the density matrix in Kohn-Sham density functional theory, despite their attractive simplicity. In this work, two new improvements to the FOE method are introduced. First, novel fast summation methods are employed to evaluate a matrix polynomial or Chebyshev matrix polynomial with matrix multiplications totalling roughly twice the square root of the degree of the polynomial. Second, six different representations of the Fermi operators are compared to assess the smallest possible degree of polynomial expansion for a given target precision. The optimal choice appears to be the complementary error function. Together, these advances make the FOE method competitive with the best existing alternatives.

  15. Light-operated machines based on threaded molecular structures.

    PubMed

    Credi, Alberto; Silvi, Serena; Venturi, Margherita

    2014-01-01

    Rotaxanes and related species represent the most common implementation of the concept of artificial molecular machines, because the supramolecular nature of the interactions between the components and their interlocked architecture allow a precise control on the position and movement of the molecular units. The use of light to power artificial molecular machines is particularly valuable because it can play the dual role of "writing" and "reading" the system. Moreover, light-driven machines can operate without accumulation of waste products, and photons are the ideal inputs to enable autonomous operation mechanisms. In appropriately designed molecular machines, light can be used to control not only the stability of the system, which affects the relative position of the molecular components but also the kinetics of the mechanical processes, thereby enabling control on the direction of the movements. This step forward is necessary in order to make a leap from molecular machines to molecular motors.

  16. Superfund record of decision (EPA Region 4): Marine Corps Logistics Base, operable unit 1, Albany, GA, October 11, 1994

    SciTech Connect

    1996-03-01

    This Decision Document presents the selected interim remedial action to prevent migration of contaminated groundwater for Potential Source of Contamination Three (PSC 3) of the Marine Corps Logistics Base. The selected remedy will include the following major components: groundwater extraction to control migration of the contaminant plume; on-site treatment of the extracted groundwater using an air stripper unit for the purpose of achieving pretreatment levels prior to discharge to the local Publicly Owned Treatment Works (POTW); on-site treatment of vapor-phase emissions from the air stripper unit; and discharge of the treated groundwater to the POTW.

  17. Isolation and structure of the cytotoxin lyngbyabellin B and absolute configuration of lyngbyapeptin A from the marine cyanobacterium Lyngbya majuscula.

    PubMed

    Luesch, H; Yoshida, W Y; Moore, R E; Paul, V J

    2000-10-01

    An analogue of the potent microfilament-disrupter lyngbyabellin A (1) has been isolated as a minor metabolite from the marine cyanobacterium Lyngbya majuscula collected at Apra Harbor, Guam. It possesses slightly weaker cytotoxicity than 1 and has been named lyngbyabellin B (2). Primarily NMR spectroscopy was used to determine its structure. The absolute configuration of 2 has been ascertained by chiral HPLC analysis of degradation products and by comparison with lyngbyabellin A (1). The known modified tetrapeptide lyngbyapeptin A (3) has also been found in the same extract, and its absolute stereochemistry could be determined for the first time.

  18. A unique capsular polysaccharide structure from the psychrophilic marine bacterium Colwellia psychrerythraea 34H that mimics antifreeze (glyco)proteins.

    PubMed

    Carillo, Sara; Casillo, Angela; Pieretti, Giuseppina; Parrilli, Ermenegilda; Sannino, Filomena; Bayer-Giraldi, Maddalena; Cosconati, Sandro; Novellino, Ettore; Ewert, Marcela; Deming, Jody W; Lanzetta, Rosa; Marino, Gennaro; Parrilli, Michelangelo; Randazzo, Antonio; Tutino, Maria L; Corsaro, M Michela

    2015-01-14

    The low temperatures of polar regions and high-altitude environments, especially icy habitats, present challenges for many microorganisms. Their ability to live under subfreezing conditions implies the production of compounds conferring cryotolerance. Colwellia psychrerythraea 34H, a γ-proteobacterium isolated from subzero Arctic marine sediments, provides a model for the study of life in cold environments. We report here the identification and detailed molecular primary and secondary structures of capsular polysaccharide from C. psychrerythraea 34H cells. The polymer was isolated in the water layer when cells were extracted by phenol/water and characterized by one- and two-dimensional NMR spectroscopy together with chemical analysis. Molecular mechanics and dynamics calculations were also performed. The polysaccharide consists of a tetrasaccharidic repeating unit containing two amino sugars and two uronic acids bearing threonine as substituent. The structural features of this unique polysaccharide resemble those present in antifreeze proteins and glycoproteins. These results suggest a possible correlation between the capsule structure and the ability of C. psychrerythraea to colonize subfreezing marine environments.

  19. Variable Geometry Aircraft Pylon Structure and Related Operation Techniques

    NASA Technical Reports Server (NTRS)

    Shah, Parthiv N. (Inventor)

    2014-01-01

    An aircraft control structure can be utilized for purposes of drag management, noise control, or aircraft flight maneuvering. The control structure includes a high pressure engine nozzle, such as a bypass nozzle or a core nozzle of a turbofan engine. The nozzle exhausts a high pressure fluid stream, which can be swirled using a deployable swirl vane architecture. The control structure also includes a variable geometry pylon configured to be coupled between the nozzle and the aircraft. The variable geometry pylon has a moveable pylon section that can be deployed into a deflected state to maintain or alter a swirling fluid stream (when the swirl vane architecture is deployed) for drag management purposes, or to assist in the performance of aircraft flight maneuvers.

  20. Contextualising the Last Survivors: Population Structure of Marine Turtles in the Dominican Republic.

    PubMed

    Carreras, Carlos; Godley, Brendan J; León, Yolanda M; Hawkes, Lucy A; Revuelta, Ohiana; Raga, Juan A; Tomás, Jesús

    2013-01-01

    Nesting by three species of marine turtles persists in the Dominican Republic, despite historic threats and long-term population decline. We conducted a genetic survey of marine turtles in the Dominican Republic in order to link them with other rookeries around the Caribbean. We sequenced a 740bp fragment of the control region of the mitochondrial DNA of 92 samples from three marine turtle species [hawksbill (n = 48), green (n = 2) and leatherback (n = 42)], and incorporated published data from other nesting populations and foraging grounds. The leatherback turtle (Dermochelys coriacea) in the Dominican Republic appeared to be isolated from Awala-Yalimapo, Cayenne, Trinidad and St. Croix but connected with other Caribbean populations. Two distinct nesting populations of hawksbill turtles (Eremochelys imbricata) were detected in the Dominican Republic and exhibited interesting patterns of connectivity with other nesting sites and juvenile and adult male foraging aggregations. The green sea turtle (Chelonia mydas) has almost been extirpated from the Dominican Republic and limited inference could be made from our samples. Finally, results were compared with Lagrangian drifting buoys and published Lagrangian virtual particles that travelled through the Dominican Republic and Caribbean waters. Conservation implications of sink-source effects or genetic isolation derived from these complex inter-connections are discussed for each species and population.

  1. Contextualising the Last Survivors: Population Structure of Marine Turtles in the Dominican Republic.

    PubMed

    Carreras, Carlos; Godley, Brendan J; León, Yolanda M; Hawkes, Lucy A; Revuelta, Ohiana; Raga, Juan A; Tomás, Jesús

    2013-01-01

    Nesting by three species of marine turtles persists in the Dominican Republic, despite historic threats and long-term population decline. We conducted a genetic survey of marine turtles in the Dominican Republic in order to link them with other rookeries around the Caribbean. We sequenced a 740bp fragment of the control region of the mitochondrial DNA of 92 samples from three marine turtle species [hawksbill (n = 48), green (n = 2) and leatherback (n = 42)], and incorporated published data from other nesting populations and foraging grounds. The leatherback turtle (Dermochelys coriacea) in the Dominican Republic appeared to be isolated from Awala-Yalimapo, Cayenne, Trinidad and St. Croix but connected with other Caribbean populations. Two distinct nesting populations of hawksbill turtles (Eremochelys imbricata) were detected in the Dominican Republic and exhibited interesting patterns of connectivity with other nesting sites and juvenile and adult male foraging aggregations. The green sea turtle (Chelonia mydas) has almost been extirpated from the Dominican Republic and limited inference could be made from our samples. Finally, results were compared with Lagrangian drifting buoys and published Lagrangian virtual particles that travelled through the Dominican Republic and Caribbean waters. Conservation implications of sink-source effects or genetic isolation derived from these complex inter-connections are discussed for each species and population. PMID:23840394

  2. Contextualising the Last Survivors: Population Structure of Marine Turtles in the Dominican Republic

    PubMed Central

    Carreras, Carlos; Godley, Brendan J.; León, Yolanda M.; Hawkes, Lucy A.; Revuelta, Ohiana; Raga, Juan A.; Tomás, Jesús

    2013-01-01

    Nesting by three species of marine turtles persists in the Dominican Republic, despite historic threats and long-term population decline. We conducted a genetic survey of marine turtles in the Dominican Republic in order to link them with other rookeries around the Caribbean. We sequenced a 740bp fragment of the control region of the mitochondrial DNA of 92 samples from three marine turtle species [hawksbill (n = 48), green (n = 2) and leatherback (n = 42)], and incorporated published data from other nesting populations and foraging grounds. The leatherback turtle (Dermochelys coriacea) in the Dominican Republic appeared to be isolated from Awala-Yalimapo, Cayenne, Trinidad and St. Croix but connected with other Caribbean populations. Two distinct nesting populations of hawksbill turtles (Eremochelys imbricata) were detected in the Dominican Republic and exhibited interesting patterns of connectivity with other nesting sites and juvenile and adult male foraging aggregations. The green sea turtle (Chelonia mydas) has almost been extirpated from the Dominican Republic and limited inference could be made from our samples. Finally, results were compared with Lagrangian drifting buoys and published Lagrangian virtual particles that travelled through the Dominican Republic and Caribbean waters. Conservation implications of sink-source effects or genetic isolation derived from these complex inter-connections are discussed for each species and population. PMID:23840394

  3. Rater Agreements in Assigning Stanfrod-Binet Items to Guilford's Structure of Intellect Operations Categories

    ERIC Educational Resources Information Center

    Dyer, Calvin O.; And Others

    1975-01-01

    Nineteen school psychologists assigned 142 items in Form L-M of the Stanford-Binet Intelligence Scale to the five Operations categories of Guilford's Structure of Intellect model. Results show levels of agreement are not high enough to justify classifying Stanford-Binet items in accordance with the Structure of Intellect Operations categories.…

  4. Genetic Structure in a Small Pelagic Fish Coincides with a Marine Protected Area: Seascape Genetics in Patagonian Fjords.

    PubMed

    Canales-Aguirre, Cristian B; Ferrada-Fuentes, Sandra; Galleguillos, Ricardo; Hernández, Cristián E

    2016-01-01

    Marine environmental variables can play an important role in promoting population genetic differentiation in marine organisms. Although fjord ecosystems have attracted much attention due to the great oscillation of environmental variables that produce heterogeneous habitats, species inhabiting this kind of ecosystem have received less attention. In this study, we used Sprattus fuegensis, a small pelagic species that populates the inner waters of the continental shelf, channels and fjords of Chilean Patagonia and Argentina, as a model species to test whether environmental variables of fjords relate to population genetic structure. A total of 282 individuals were analyzed from Chilean Patagonia with eight microsatellite loci. Bayesian and non-Bayesian analyses were conducted to describe the genetic variability of S. fuegensis and whether it shows spatial genetic structure. Results showed two well-differentiated genetic clusters along the Chilean Patagonia distribution (i.e. inside the embayment area called TicToc, and the rest of the fjords), but no spatial isolation by distance (IBD) pattern was found with a Mantel test analysis. Temperature and nitrate were correlated to the expected heterozygosities and explained the allelic frequency variation of data in the redundancy analyses. These results suggest that the singular genetic differences found in S. fuegensis from inside TicToc Bay (East of the Corcovado Gulf) are the result of larvae retention bya combination of oceanographic mesoscale processes (i.e. the west wind drift current reaches the continental shelf exactly in this zone), and the local geographical configuration (i.e. embayment area, islands, archipelagos). We propose that these features generated an isolated area in the Patagonian fjords that promoted genetic differentiation by drift and a singular biodiversity, adding support to the existence of the largest marine protected area (MPA) of continental Chile, which is the Tic-Toc MPA. PMID:27505009

  5. Genetic Structure in a Small Pelagic Fish Coincides with a Marine Protected Area: Seascape Genetics in Patagonian Fjords

    PubMed Central

    Ferrada-Fuentes, Sandra; Galleguillos, Ricardo; Hernández, Cristián E.

    2016-01-01

    Marine environmental variables can play an important role in promoting population genetic differentiation in marine organisms. Although fjord ecosystems have attracted much attention due to the great oscillation of environmental variables that produce heterogeneous habitats, species inhabiting this kind of ecosystem have received less attention. In this study, we used Sprattus fuegensis, a small pelagic species that populates the inner waters of the continental shelf, channels and fjords of Chilean Patagonia and Argentina, as a model species to test whether environmental variables of fjords relate to population genetic structure. A total of 282 individuals were analyzed from Chilean Patagonia with eight microsatellite loci. Bayesian and non-Bayesian analyses were conducted to describe the genetic variability of S. fuegensis and whether it shows spatial genetic structure. Results showed two well-differentiated genetic clusters along the Chilean Patagonia distribution (i.e. inside the embayment area called TicToc, and the rest of the fjords), but no spatial isolation by distance (IBD) pattern was found with a Mantel test analysis. Temperature and nitrate were correlated to the expected heterozygosities and explained the allelic frequency variation of data in the redundancy analyses. These results suggest that the singular genetic differences found in S. fuegensis from inside TicToc Bay (East of the Corcovado Gulf) are the result of larvae retention bya combination of oceanographic mesoscale processes (i.e. the west wind drift current reaches the continental shelf exactly in this zone), and the local geographical configuration (i.e. embayment area, islands, archipelagos). We propose that these features generated an isolated area in the Patagonian fjords that promoted genetic differentiation by drift and a singular biodiversity, adding support to the existence of the largest marine protected area (MPA) of continental Chile, which is the Tic-Toc MPA. PMID:27505009

  6. Structural characterization of a unique marine animal family 7 cellobiohydrolase suggests a mechanism of cellulase salt tolerance

    PubMed Central

    Kern, Marcelo; McGeehan, John E.; Streeter, Simon D.; Martin, Richard N. A.; Besser, Katrin; Elias, Luisa; Eborall, Will; Malyon, Graham P.; Payne, Christina M.; Himmel, Michael E.; Schnorr, Kirk; Beckham, Gregg T.; Cragg, Simon M.; Bruce, Neil C.; McQueen-Mason, Simon J.

    2013-01-01

    Nature uses a diversity of glycoside hydrolase (GH) enzymes to convert polysaccharides to sugars. As lignocellulosic biomass deconstruction for biofuel production remains costly, natural GH diversity offers a starting point for developing industrial enzymes, and fungal GH family 7 (GH7) cellobiohydrolases, in particular, provide significant hydrolytic potential in industrial mixtures. Recently, GH7 enzymes have been found in other kingdoms of life besides fungi, including in animals and protists. Here, we describe the in vivo spatial expression distribution, properties, and structure of a unique endogenous GH7 cellulase from an animal, the marine wood borer Limnoria quadripunctata (LqCel7B). RT-quantitative PCR and Western blot studies show that LqCel7B is expressed in the hepatopancreas and secreted into the gut for wood degradation. We produced recombinant LqCel7B, with which we demonstrate that LqCel7B is a cellobiohydrolase and obtained four high-resolution crystal structures. Based on a crystallographic and computational comparison of LqCel7B to the well-characterized Hypocrea jecorina GH7 cellobiohydrolase, LqCel7B exhibits an extended substrate-binding motif at the tunnel entrance, which may aid in substrate acquisition and processivity. Interestingly, LqCel7B exhibits striking surface charges relative to fungal GH7 enzymes, which likely results from evolution in marine environments. We demonstrate that LqCel7B stability and activity remain unchanged, or increase at high salt concentration, and that the L. quadripunctata GH mixture generally contains cellulolytic enzymes with highly acidic surface charge compared with enzymes derived from terrestrial microbes. Overall, this study suggests that marine cellulases offer significant potential for utilization in high-solids industrial biomass conversion processes. PMID:23733951

  7. Genetic Structure in a Small Pelagic Fish Coincides with a Marine Protected Area: Seascape Genetics in Patagonian Fjords.

    PubMed

    Canales-Aguirre, Cristian B; Ferrada-Fuentes, Sandra; Galleguillos, Ricardo; Hernández, Cristián E

    2016-01-01

    Marine environmental variables can play an important role in promoting population genetic differentiation in marine organisms. Although fjord ecosystems have attracted much attention due to the great oscillation of environmental variables that produce heterogeneous habitats, species inhabiting this kind of ecosystem have received less attention. In this study, we used Sprattus fuegensis, a small pelagic species that populates the inner waters of the continental shelf, channels and fjords of Chilean Patagonia and Argentina, as a model species to test whether environmental variables of fjords relate to population genetic structure. A total of 282 individuals were analyzed from Chilean Patagonia with eight microsatellite loci. Bayesian and non-Bayesian analyses were conducted to describe the genetic variability of S. fuegensis and whether it shows spatial genetic structure. Results showed two well-differentiated genetic clusters along the Chilean Patagonia distribution (i.e. inside the embayment area called TicToc, and the rest of the fjords), but no spatial isolation by distance (IBD) pattern was found with a Mantel test analysis. Temperature and nitrate were correlated to the expected heterozygosities and explained the allelic frequency variation of data in the redundancy analyses. These results suggest that the singular genetic differences found in S. fuegensis from inside TicToc Bay (East of the Corcovado Gulf) are the result of larvae retention bya combination of oceanographic mesoscale processes (i.e. the west wind drift current reaches the continental shelf exactly in this zone), and the local geographical configuration (i.e. embayment area, islands, archipelagos). We propose that these features generated an isolated area in the Patagonian fjords that promoted genetic differentiation by drift and a singular biodiversity, adding support to the existence of the largest marine protected area (MPA) of continental Chile, which is the Tic-Toc MPA.

  8. Structural characterization of a unique marine animal family 7 cellobiohydrolase suggests a mechanism of cellulase salt tolerance.

    PubMed

    Kern, Marcelo; McGeehan, John E; Streeter, Simon D; Martin, Richard N A; Besser, Katrin; Elias, Luisa; Eborall, Will; Malyon, Graham P; Payne, Christina M; Himmel, Michael E; Schnorr, Kirk; Beckham, Gregg T; Cragg, Simon M; Bruce, Neil C; McQueen-Mason, Simon J

    2013-06-18

    Nature uses a diversity of glycoside hydrolase (GH) enzymes to convert polysaccharides to sugars. As lignocellulosic biomass deconstruction for biofuel production remains costly, natural GH diversity offers a starting point for developing industrial enzymes, and fungal GH family 7 (GH7) cellobiohydrolases, in particular, provide significant hydrolytic potential in industrial mixtures. Recently, GH7 enzymes have been found in other kingdoms of life besides fungi, including in animals and protists. Here, we describe the in vivo spatial expression distribution, properties, and structure of a unique endogenous GH7 cellulase from an animal, the marine wood borer Limnoria quadripunctata (LqCel7B). RT-quantitative PCR and Western blot studies show that LqCel7B is expressed in the hepatopancreas and secreted into the gut for wood degradation. We produced recombinant LqCel7B, with which we demonstrate that LqCel7B is a cellobiohydrolase and obtained four high-resolution crystal structures. Based on a crystallographic and computational comparison of LqCel7B to the well-characterized Hypocrea jecorina GH7 cellobiohydrolase, LqCel7B exhibits an extended substrate-binding motif at the tunnel entrance, which may aid in substrate acquisition and processivity. Interestingly, LqCel7B exhibits striking surface charges relative to fungal GH7 enzymes, which likely results from evolution in marine environments. We demonstrate that LqCel7B stability and activity remain unchanged, or increase at high salt concentration, and that the L. quadripunctata GH mixture generally contains cellulolytic enzymes with highly acidic surface charge compared with enzymes derived from terrestrial microbes. Overall, this study suggests that marine cellulases offer significant potential for utilization in high-solids industrial biomass conversion processes.

  9. Fluid Structure Interaction Simulations of Pediatric Ventricular Assist Device Operation

    NASA Astrophysics Data System (ADS)

    Long, Chris; Marsden, Alison; Bazilevs, Yuri

    2011-11-01

    Pediatric ventricular assist devices (PVADs) are used for mechanical circulatory support in children with failing hearts. They can be used to allow the heart to heal naturally or to extend the life of the patient until transplant. A PVAD has two chambers, blood and air, separated by a flexible membrane. The air chamber is pressurized, which drives the membrane and pumps the blood. The primary risk associated with these devices is stroke or embolism from thrombogenesis. Simulation of these devices is difficult due to a complex coupling of two fluid domains and a thin membrane, requiring fluid-structure interaction modeling. The goal of this work is to accurately simulate the hemodynamics of a PVAD. We perform FSI simulations using an Arbitrary Lagrangian-Eulerian (ALE) finite element framework to account for large motions of the membrane and the fluid domains. The air, blood, and membrane are meshed as distinct subdomains, and a method for non-matched discretizations at the fluid-structure interface is presented. The use of isogeometric analysis to model the membrane mechanics is also discussed, and the results of simulations are presented.

  10. Simulating Pediatric Ventricular Assist Device Operation Using Fluid Structure Interaction

    NASA Astrophysics Data System (ADS)

    Long, Chris; Bazilevs, Yuri; Marsden, Alison

    2012-11-01

    Ventricular Assist Devices (VADs) provide mechanical circulatory support to patients in heart failure. They are primarily used to extend life until cardiac transplant, but also show promise as a ``bridge-to-recovery'' device in pediatric patients. Commercially available pediatric pumps are pulsatile displacement pumps, with two distinct chambers for air and blood separated by a thin, flexible membrane. The air chamber pneumatically drives the membrane, which drives blood through the other chamber via displacement. The primary risk factor associated with these devices is stroke or embolism due to thrombogenesis in the blood chamber, occurring in as many as 40% of patients. Our goal is to perform simulations that accurately model the hemodynamics of the device, as well as the non-linear membrane buckling. We apply a finite-element based fluid solver, with an Arbitrary Lagrangian-Eulerian (ALE) framework to account for mesh motion. Isogeometric Analysis with a Kirchhoff-Love shell formulation is used on the membrane, and two distinct fluid subdomains are used for the air and blood chambers. The Fluid Structure Interaction (FSI) problem is solved simultaneously, using a Matrix Free method to model the interactions at the fluid-structure boundary. Methods and results are presented.

  11. Analytical Operations Relate Structural and Functional Connectivity in the Brain.

    PubMed

    Saggio, Maria Luisa; Ritter, Petra; Jirsa, Viktor K

    2016-01-01

    Resting-state large-scale brain models vary in the amount of biological elements they incorporate and in the way they are being tested. One might expect that the more realistic the model is, the closer it should reproduce real functional data. It has been shown, instead, that when linear correlation across long BOLD fMRI time-series is used as a measure for functional connectivity (FC) to compare simulated and real data, a simple model performs just as well, or even better, than more sophisticated ones. The model in question is a simple linear model, which considers the physiological noise that is pervasively present in our brain while it diffuses across the white-matter connections, that is structural connectivity (SC). We deeply investigate this linear model, providing an analytical solution to straightforwardly compute FC from SC without the need of computationally costly simulations of time-series. We provide a few examples how this analytical solution could be used to perform a fast and detailed parameter exploration or to investigate resting-state non-stationarities. Most importantly, by inverting the analytical solution, we propose a method to retrieve information on the anatomical structure directly from functional data. This simple method can be used to complement or guide DTI/DSI and tractography results, especially for a better assessment of inter-hemispheric connections, or to provide an estimate of SC when only functional data are available. PMID:27536987

  12. Analytical Operations Relate Structural and Functional Connectivity in the Brain

    PubMed Central

    Saggio, Maria Luisa; Ritter, Petra; Jirsa, Viktor K.

    2016-01-01

    Resting-state large-scale brain models vary in the amount of biological elements they incorporate and in the way they are being tested. One might expect that the more realistic the model is, the closer it should reproduce real functional data. It has been shown, instead, that when linear correlation across long BOLD fMRI time-series is used as a measure for functional connectivity (FC) to compare simulated and real data, a simple model performs just as well, or even better, than more sophisticated ones. The model in question is a simple linear model, which considers the physiological noise that is pervasively present in our brain while it diffuses across the white-matter connections, that is structural connectivity (SC). We deeply investigate this linear model, providing an analytical solution to straightforwardly compute FC from SC without the need of computationally costly simulations of time-series. We provide a few examples how this analytical solution could be used to perform a fast and detailed parameter exploration or to investigate resting-state non-stationarities. Most importantly, by inverting the analytical solution, we propose a method to retrieve information on the anatomical structure directly from functional data. This simple method can be used to complement or guide DTI/DSI and tractography results, especially for a better assessment of inter-hemispheric connections, or to provide an estimate of SC when only functional data are available. PMID:27536987

  13. Mangicols: structures and biosynthesis of A new class of sesterterpene polyols from a marine fungus of the genus Fusarium.

    PubMed

    Renner, M K; Jensen, P R; Fenical, W

    2000-08-11

    A marine fungal isolate, tentatively identified as Fusarium heterosporum, has been found to produce a series of structurally novel sesterterpene polyols, the mangicols A-G (4-10). The structures of the new compounds, including the stereochemistry of mangicol A, were assigned by interpretation of spectral data derived from both natural products and synthetic derivatives. The mangicols, which possess unprecedented spirotricyclic skeletal components, show only weak to modest cytotoxicities toward a variety of cancer cell lines in in vitro testing. Mangicols A and B, however, showed significant antiinflammatory activity in the PMA (phorbol myristate acetate)-induced mouse ear edema model. A biosynthetic pathway for the neomangicol and mangicol carbon skeletons is proposed on the basis of the incorporation of appropriate radiolabeled precursors.

  14. Structure and biosynthesis of the marine streptomycete ansamycin ansalactam A and its distinctive branched chain polyketide extender unit.

    PubMed

    Wilson, Micheal C; Nam, Sang-Jip; Gulder, Tobias A M; Kauffman, Christopher A; Jensen, Paul R; Fenical, William; Moore, Bradley S

    2011-02-16

    Reported is the structure and biosynthesis of ansalactam A, an ansamycin class polyketide produced by an unusual modification of the polyketide pathway. This new metabolite, produced by a marine sediment-derived bacterium of the genus Streptomyces , possesses a novel spiro γ-lactam moiety and a distinctive isobutyryl polyketide fragment observed for the first time in this class of natural products. The structure of ansalactam A was defined by spectroscopic methods including X-ray crystallographic analysis. Biosynthetic studies with stable isotopes further led to the discovery of a new, branched chain polyketide synthase extender unit derived from (E)-4-methyl-2-pentenoic acid for polyketide assembly observed for the first time in this class of natural products.

  15. Structure and anticancer activity of sulfated O-polysaccharide from marine bacterium Cobetia litoralis KMM 3880(T).

    PubMed

    Kokoulin, Maxim S; Kuzmich, Alexandra S; Kalinovsky, Anatoly I; Tomshich, Svetlana V; Romanenko, Lyudmila A; Mikhailov, Valery V; Komandrova, Nadezhda A

    2016-12-10

    We presented the structure of the polysaccharide moiety and anticancer activity in vitro of the sulfated lipopolysaccharide isolated from the marine bacterium Cobetia litoralis KMM 3880(T). The structure of O-polysaccharide was investigated by chemical methods along with (1)H and (13)C NMR spectroscopy. The O-polysaccharide was built up of branched trisaccharide repeating units consist of D-glucose (D-Glcр), D-mannose (D-Manр) and sulfated 3-deoxy-d-manno-oct-2-ulosonic acid (Kdo5S): →7-β-Kdoр4Ac5S-(2→4)-[β-d-Glcp-(1→2)-]-β-d-Manр6Ac-1→. We demonstrated that the lipopolysaccharide and О-deacetylated O-polysaccharide from Cobetia litoralis KMM 3880(T) inhibited a colony formation of human melanoma SK-MEL-28 and colorectal carcinoma HTC-116 cells. PMID:27577896

  16. Marine-derived myxobacteria of the suborder Nannocystineae: An underexplored source of structurally intriguing and biologically active metabolites

    PubMed Central

    Schäberle, Till F

    2016-01-01

    Summary Myxobacteria are famous for their ability to produce most intriguing secondary metabolites. Till recently, only terrestrial myxobacteria were in the focus of research. In this review, however, we discuss marine-derived myxobacteria, which are particularly interesting due to their relatively recent discovery and due to the fact that their very existence was called into question. The to-date-explored members of these halophilic or halotolerant myxobacteria are all grouped into the suborder Nannocystineae. Few of them were chemically investigated revealing around 11 structural types belonging to the polyketide, non-ribosomal peptide, hybrids thereof or terpenoid class of secondary metabolites. A most unusual structural type is represented by salimabromide from Enhygromyxa salina. In silico analyses were carried out on the available genome sequences of four bacterial members of the Nannocystineae, revealing the biosynthetic potential of these bacteria. PMID:27340488

  17. Dihydrothiophene-condensed chromones from a marine-derived fungus Penicillium oxalicum and their structure-bioactivity relationship.

    PubMed

    Bao, Jie; Luo, Jin-Feng; Qin, Xiao-Chu; Xu, Xin-Ya; Zhang, Xiao-Yong; Tu, Zheng-Chao; Qi, Shu-Hua

    2014-06-01

    Four dihydrothiophene-condensed chromones including two new compounds oxalicumones D-E (1-2) and known oxalicumones A-B (3-4), along with five other known chromones were isolated from a culture broth of the marine gorgonian-associated fungus Penicillium oxalicum SCSGAF 0023. The structures of 1-2 were elucidated by spectroscopic analysis. Eleven derivatives 3a-3i and 4a-4b were obtained from the acylation of 3 and 4, respectively. Compounds 1-4, 3a-3e, 3g-3h, and 4b showed significant cytotoxicity against several carcinoma cell lines with IC50 ≤ 10 μM. And their structure-bioactivity relationship was discussed.

  18. Comparative structural morphometry and elemental composition of three marine sponges from western coast of India.

    PubMed

    Kumar, Maushmi S; Shah, Bhaumik

    2014-04-01

    Three marine sponges Halichondria glabrata, Cliono lobata, and Spirastrella pachyspira from the western coastal region of India were compared for their morphometry, biochemical, and elemental composition. One-way analysis of variance was applied for spicule morphometry results. Length, width, and length:width ratio were calculated independently. The ratio of length:width varied from 35 to 42 among the grown samples, which remained in the range of 10-22 in young sample at the beginning of studies. However, no significant change was observed in spicule width compared to length. Elemental compositions of marine sponges were determined by field emission gun-scanning electron microscope. Scanning electron microscopy data revealed that the spicules of all the three sponges were mostly composed of O (47-56%) and Si (30-40%), whereas Al (14.33%) was only detected in the spicules of C. lobata. Apart from these, K, Ni, Ca, Fe, Mg, Na, and S were additionally detected in all the three samples. Presence of heavy metals in the sponges was analyzed by inductively coupled plasma-atomic emission spectroscopy. Results showed that iron was present in a large amount in samples, followed by zinc, lead, and copper.

  19. Recent Trends in Local-Scale Marine Biodiversity Reflect Community Structure and Human Impacts.

    PubMed

    Elahi, Robin; O'Connor, Mary I; Byrnes, Jarrett E K; Dunic, Jillian; Eriksson, Britas Klemens; Hensel, Marc J S; Kearns, Patrick J

    2015-07-20

    The modern biodiversity crisis reflects global extinctions and local introductions. Human activities have dramatically altered rates and scales of processes that regulate biodiversity at local scales. Reconciling the threat of global biodiversity loss with recent evidence of stability at fine spatial scales is a major challenge and requires a nuanced approach to biodiversity change that integrates ecological understanding. With a new dataset of 471 diversity time series spanning from 1962 to 2015 from marine coastal ecosystems, we tested (1) whether biodiversity changed at local scales in recent decades, and (2) whether we can ignore ecological context (e.g., proximate human impacts, trophic level, spatial scale) and still make informative inferences regarding local change. We detected a predominant signal of increasing species richness in coastal systems since 1962 in our dataset, though net species loss was associated with localized effects of anthropogenic impacts. Our geographically extensive dataset is unlikely to be a random sample of marine coastal habitats; impacted sites (3% of our time series) were underrepresented relative to their global presence. These local-scale patterns do not contradict the prospect of accelerating global extinctions but are consistent with local species loss in areas with direct human impacts and increases in diversity due to invasions and range expansions in lower impact areas. Attempts to detect and understand local biodiversity trends are incomplete without information on local human activities and ecological context. PMID:26166784

  20. Recent Trends in Local-Scale Marine Biodiversity Reflect Community Structure and Human Impacts.

    PubMed

    Elahi, Robin; O'Connor, Mary I; Byrnes, Jarrett E K; Dunic, Jillian; Eriksson, Britas Klemens; Hensel, Marc J S; Kearns, Patrick J

    2015-07-20

    The modern biodiversity crisis reflects global extinctions and local introductions. Human activities have dramatically altered rates and scales of processes that regulate biodiversity at local scales. Reconciling the threat of global biodiversity loss with recent evidence of stability at fine spatial scales is a major challenge and requires a nuanced approach to biodiversity change that integrates ecological understanding. With a new dataset of 471 diversity time series spanning from 1962 to 2015 from marine coastal ecosystems, we tested (1) whether biodiversity changed at local scales in recent decades, and (2) whether we can ignore ecological context (e.g., proximate human impacts, trophic level, spatial scale) and still make informative inferences regarding local change. We detected a predominant signal of increasing species richness in coastal systems since 1962 in our dataset, though net species loss was associated with localized effects of anthropogenic impacts. Our geographically extensive dataset is unlikely to be a random sample of marine coastal habitats; impacted sites (3% of our time series) were underrepresented relative to their global presence. These local-scale patterns do not contradict the prospect of accelerating global extinctions but are consistent with local species loss in areas with direct human impacts and increases in diversity due to invasions and range expansions in lower impact areas. Attempts to detect and understand local biodiversity trends are incomplete without information on local human activities and ecological context.

  1. Marine landscapes and population genetic structure of herring (Clupea harengus L.) in the Baltic Sea.

    PubMed

    Jørgensen, Hanne B H; Hansen, Michael M; Bekkevold, Dorte; Ruzzante, Daniel E; Loeschcke, Volker

    2005-09-01

    Numerically small but statistically significant genetic differentiation has been found in many marine fish species despite very large census population sizes and absence of obvious barriers to migrating individuals. Analyses of morphological traits have previously identified local spawning groups of herring (Clupea harengus L.) in the environmentally heterogeneous Baltic Sea, whereas allozyme markers have not revealed differentiation. We analysed variation at nine microsatellite loci in 24 samples of spring-spawning herring collected at 11 spawning locations throughout the Baltic Sea. Significant temporal differentiation was observed at two locations, which we ascribe to sympatrically spawning but genetically divergent 'spawning waves'. Significant differentiation was also present on a geographical scale, though pairwise F(ST) values were generally low, not exceeding 0.027. Partial Mantel tests showed no isolation by geographical distance, but significant associations were observed between genetic differentiation and environmental parameters (salinity and surface temperature) (0.001 < P < or = 0.099), though these outcomes were driven mainly by populations in the southwestern Baltic Sea, which also exhibits the steepest environmental gradients. Application of a novel method for detecting barriers to gene flow by combining geographical coordinates and genetic differentiation allowed us to identify two zones of lowered gene flow. These zones were concordant with the separation of the Baltic Sea into major basins, with environmental gradients and with differences in migration behaviour. We suggest that similar use of landscape genetics approaches may increase the understanding of the biological significance of genetic differentiation in other marine fishes.

  2. Population structure and phylogeography in Nassau grouper (Epinephelus striatus), a mass-aggregating marine fish.

    PubMed

    Jackson, Alexis M; Semmens, Brice X; Sadovy de Mitcheson, Yvonne; Nemeth, Richard S; Heppell, Scott A; Bush, Phillippe G; Aguilar-Perera, Alfonso; Claydon, John A B; Calosso, Marta C; Sealey, Kathleen S; Schärer, Michelle T; Bernardi, Giacomo

    2014-01-01

    To address patterns of genetic connectivity in a mass-aggregating marine fish, we analyzed genetic variation in mitochondrial DNA (mtDNA), microsatellites, and single nucleotide polymorphisms (SNPs) for Nassau grouper (Epinephelus striatus). We expected Nassau grouper to exhibit genetic differentiation among its subpopulations due to its reproductive behavior and retentive oceanographic conditions experienced across the Caribbean basin. All samples were genotyped for two mitochondrial markers and 9 microsatellite loci, and a subset of samples were genotyped for 4,234 SNPs. We found evidence of genetic differentiation in a Caribbean-wide study of this mass-aggregating marine fish using mtDNA (FST = 0.206, p<0.001), microsatellites (FST = 0.002, p = 0.004) and SNPs (FST = 0.002, p = 0.014), and identified three potential barriers to larval dispersal. Genetically isolated regions identified in our work mirror those seen for other invertebrate and fish species in the Caribbean basin. Oceanographic regimes in the Caribbean may largely explain patterns of genetic differentiation among Nassau grouper subpopulations. Regional patterns observed warrant standardization of fisheries management and conservation initiatives among countries within genetically isolated regions.

  3. Population Structure and Phylogeography in Nassau Grouper (Epinephelus striatus), a Mass-Aggregating Marine Fish

    PubMed Central

    Jackson, Alexis M.; Semmens, Brice X.; Sadovy de Mitcheson, Yvonne; Nemeth, Richard S.; Heppell, Scott A.; Bush, Phillippe G.; Aguilar-Perera, Alfonso; Claydon, John A. B.; Calosso, Marta C.; Sealey, Kathleen S.; Schärer, Michelle T.; Bernardi, Giacomo

    2014-01-01

    To address patterns of genetic connectivity in a mass-aggregating marine fish, we analyzed genetic variation in mitochondrial DNA (mtDNA), microsatellites, and single nucleotide polymorphisms (SNPs) for Nassau grouper (Epinephelus striatus). We expected Nassau grouper to exhibit genetic differentiation among its subpopulations due to its reproductive behavior and retentive oceanographic conditions experienced across the Caribbean basin. All samples were genotyped for two mitochondrial markers and 9 microsatellite loci, and a subset of samples were genotyped for 4,234 SNPs. We found evidence of genetic differentiation in a Caribbean-wide study of this mass-aggregating marine fish using mtDNA (FST = 0.206, p<0.001), microsatellites (FST = 0.002, p = 0.004) and SNPs (FST = 0.002, p = 0.014), and identified three potential barriers to larval dispersal. Genetically isolated regions identified in our work mirror those seen for other invertebrate and fish species in the Caribbean basin. Oceanographic regimes in the Caribbean may largely explain patterns of genetic differentiation among Nassau grouper subpopulations. Regional patterns observed warrant standardization of fisheries management and conservation initiatives among countries within genetically isolated regions. PMID:24830641

  4. In vitro bioactivity studies of ceramic structures isolated from marine sponges.

    PubMed

    Barros, Alexandre A; Aroso, Ivo M; Silva, Tiago H; Mano, João F; Duarte, Ana Rita C; Reis, Rui L

    2016-01-01

    In this work, we focused on the potential of bioceramics from different marine sponges-namely Petrosia ficiformis, Agelas oroides and Chondrosia reniformis-for novel biomedical/industrial applications. The bioceramics from these sponges were obtained after calcination at 750 °C for 6 h in a furnace. The morphological characteristics were evaluated by scanning electron microscopy (SEM). The in vitro bioactivity of the bioceramics was evaluated in simulated body fluid (SBF) after 14 and 21 d. Observation of the bioceramics by SEM after immersion in SBF solution, coupled with spectroscopic elemental analysis (EDS), showed that the surface morphology was consistent with a calcium-phosphate (Ca/P) coating, similar to hydroxyapatite crystals (HA). Evaluation of the characteristic peaks of Ca/P crystals by Fourier transform infrared spectroscopy and x-ray diffraction further confirmed the existence of HA. Cytotoxicity studies were carried out with the different ceramics and these were compared with a commercially available Bioglass(®). In vitro tests demonstrated that marine bioceramics from these sponges are non-cytotoxic and have the potential to be used as substitutes for synthetic Bioglass(®). PMID:27481449

  5. Performance and Near-Wake Flow field of A Marine Hydrokinetic Turbine Operating in Free surface Proximity

    NASA Astrophysics Data System (ADS)

    Banerjee, Arindam; Kolekar, Nitin

    2015-11-01

    The current experimental investigation aims at understanding the effect of free surface proximity and associated blockage on near-wake flow-field and performance of a three bladed horizontal axis marine hydrokinetic turbine. Experiments were conducted on a 0.14m radius, three bladed constant chord turbine in a 0.61m ×0.61m test section water channel. The turbine was subjected to various rotational speeds, flow speeds and depths of immersion. Experimental data was acquired through a submerged in-line thrust-torque sensor that was corrected to an unblocked dataset with a blockage correction using measured thrust data. A detailed comparison is presented between blocked and unblocked datasets to identify influence of Reynolds number and free surface proximity on blockage effects. The percent change in Cp was found to be dependent on flow velocity, rotational speed and free surface to blade tip clearance. Further, flow visualization using a stereoscopic particle image velocimetry was carried out in the near-wake region of turbine to understand the mechanism responsible for variation of Cp with rotational speed and free surface proximity. Results revealed presence of slower wake at higher rotational velocities and increased asymmetry in the wake at high free surface proximity.

  6. Historical dimensions of population structure in a continuously distributed marine species: The case of the endemic Chilean dolphin

    PubMed Central

    Pérez-Alvarez, M. J.; Olavarría, C.; Moraga, R.; Baker, C. S.; Hamner, R. M.; Poulin, E.

    2016-01-01

    The complementarity of historical and contemporary processes contributes to understanding the genetic structure of continuously distributed marine species with high dispersal capabilities. Cephalorhynchus eutropia, has a continuous coastal distribution with strong genetic differentiation identified by nuclear DNA markers. We explored the historical dimension of this genetic differentiation between northern and southern populations to evaluate phylogeographic structure. Additionally, we conducted mtDNA and microsatellite analyses to detect past and recent demographic changes. The southern population was characterized by lower genetic diversity with a signal of population expansion, likely associated with ice retreat and habitat extension after the Last Glacial Maximum (LGM). In contrast, structure within the northern population was more consistent with stable historical population size. Approximate Bayesian Computation analyses suggested that during the LGM, C. eutropia persisted in the northern area; while the south was colonized by dispersal ~11,000 years ago followed by population expansion. This study shows that Chilean dolphin population structure is consistent with predictions from the Expansion-Contraction biogeographic model, with a poleward post-glacial shift revealed in current genetic structure. The results also confirm the validity of the population units previously identified, demonstrating their historical origin and highlighting the utility of integrating genetic markers with different temporal scale resolutions. PMID:27759113

  7. Regime shifts in exploited marine food webs: detecting mechanisms underlying alternative stable states using size-structured community dynamics theory

    PubMed Central

    Gårdmark, Anna; Casini, Michele; Huss, Magnus; van Leeuwen, Anieke; Hjelm, Joakim; Persson, Lennart; de Roos, André M.

    2015-01-01

    Many marine ecosystems have undergone ‘regime shifts’, i.e. abrupt reorganizations across trophic levels. Establishing whether these constitute shifts between alternative stable states is of key importance for the prospects of ecosystem recovery and for management. We show how mechanisms underlying alternative stable states caused by predator–prey interactions can be revealed in field data, using analyses guided by theory on size-structured community dynamics. This is done by combining data on individual performance (such as growth and fecundity) with information on population size and prey availability. We use Atlantic cod (Gadus morhua) and their prey in the Baltic Sea as an example to discuss and distinguish two types of mechanisms, ‘cultivation-depensation’ and ‘overcompensation’, that can cause alternative stable states preventing the recovery of overexploited piscivorous fish populations. Importantly, the type of mechanism can be inferred already from changes in the predators' body growth in different life stages. Our approach can thus be readily applied to monitored stocks of piscivorous fish species, for which this information often can be assembled. Using this tool can help resolve the causes of catastrophic collapses in marine predatory–prey systems and guide fisheries managers on how to successfully restore collapsed piscivorous fish stocks.

  8. Using geographical information techniques to quantify the spatial structure of endolithic boring processes within sediment grains of marine stromatolites.

    PubMed

    Petrisor, Alexandru I; Decho, Alan W

    2004-02-01

    Marine stromatolites are generated through the interactions of environmental parameters and specific microbial processes. The activities of endolithic bacteria, that bore canals through calcium carbonate (CaCO(3)) sand grains (ooids) and reprecipitate the CaCO(3) as a single layer (i.e. micritic laminae) are especially important in the longer term stability of the stromatolite macrostructure. Image analysis and classification approaches have been used previously, but only seldom as a quantitative microscopic tool. Here, we develop a new approach that enables the quantification of microscale (i.e. micrometers to millimeters) spatial structure within marine stromatolites. To demonstrate our approach, images were acquired from two different layers of a stromatolite: "orange layers", where microboring of canals within ooids was relatively abundant, and "white layers" where microboring was greatly reduced or lacking. Images were then transformed into spatial maps. Computation of canal and ooid grain areas within each image was conducted and statistically compared between replicate samples from the two stromatolite layers. This allowed quantification of the areas of ooid grains that were microbored. Based on our results, we suggest that our method could be widely applicable to sedimentary environments, and other areas of fundamental research.

  9. Small-Scale Habitat Structure Modulates the Effects of No-Take Marine Reserves for Coral Reef Macroinvertebrates

    PubMed Central

    Dumas, Pascal; Jimenez, Haizea; Peignon, Christophe; Wantiez, Laurent; Adjeroud, Mehdi

    2013-01-01

    No-take marine reserves are one of the oldest and most versatile tools used across the Pacific for the conservation of reef resources, in particular for invertebrates traditionally targeted by local fishers. Assessing their actual efficiency is still a challenge in complex ecosystems such as coral reefs, where reserve effects are likely to be obscured by high levels of environmental variability. The goal of this study was to investigate the potential interference of small-scale habitat structure on the efficiency of reserves. The spatial distribution of widely harvested macroinvertebrates was surveyed in a large set of protected vs. unprotected stations from eleven reefs located in New Caledonia. Abundance, density and individual size data were collected along random, small-scale (20×1 m) transects. Fine habitat typology was derived with a quantitative photographic method using 17 local habitat variables. Marine reserves substantially augmented the local density, size structure and biomass of the target species. Density of Trochus niloticus and Tridacna maxima doubled globally inside the reserve network; average size was greater by 10 to 20% for T. niloticus. We demonstrated that the apparent success of protection could be obscured by marked variations in population structure occurring over short distances, resulting from small-scale heterogeneity in the reef habitat. The efficiency of reserves appeared to be modulated by the availability of suitable habitats at the decimetric scale (“microhabitats”) for the considered sessile/low-mobile macroinvertebrate species. Incorporating microhabitat distribution could significantly enhance the efficiency of habitat surrogacy, a valuable approach in the case of conservation targets focusing on endangered or emblematic macroinvertebrate or relatively sedentary fish species PMID:23554965

  10. Small-scale habitat structure modulates the effects of no-take marine reserves for coral reef macroinvertebrates.

    PubMed

    Dumas, Pascal; Jimenez, Haizea; Peignon, Christophe; Wantiez, Laurent; Adjeroud, Mehdi

    2013-01-01

    No-take marine reserves are one of the oldest and most versatile tools used across the Pacific for the conservation of reef resources, in particular for invertebrates traditionally targeted by local fishers. Assessing their actual efficiency is still a challenge in complex ecosystems such as coral reefs, where reserve effects are likely to be obscured by high levels of environmental variability. The goal of this study was to investigate the potential interference of small-scale habitat structure on the efficiency of reserves. The spatial distribution of widely harvested macroinvertebrates was surveyed in a large set of protected vs. unprotected stations from eleven reefs located in New Caledonia. Abundance, density and individual size data were collected along random, small-scale (20×1 m) transects. Fine habitat typology was derived with a quantitative photographic method using 17 local habitat variables. Marine reserves substantially augmented the local density, size structure and biomass of the target species. Density of Trochus niloticus and Tridacna maxima doubled globally inside the reserve network; average size was greater by 10 to 20% for T. niloticus. We demonstrated that the apparent success of protection could be obscured by marked variations in population structure occurring over short distances, resulting from small-scale heterogeneity in the reef habitat. The efficiency of reserves appeared to be modulated by the availability of suitable habitats at the decimetric scale ("microhabitats") for the considered sessile/low-mobile macroinvertebrate species. Incorporating microhabitat distribution could significantly enhance the efficiency of habitat surrogacy, a valuable approach in the case of conservation targets focusing on endangered or emblematic macroinvertebrate or relatively sedentary fish species.

  11. Predicting Consumer Biomass, Size-Structure, Production, Catch Potential, Responses to Fishing and Associated Uncertainties in the World's Marine Ecosystems.

    PubMed

    Jennings, Simon; Collingridge, Kate

    2015-01-01

    Existing estimates of fish and consumer biomass in the world's oceans are disparate. This creates uncertainty about the roles of fish and other consumers in biogeochemical cycles and ecosystem processes, the extent of human and environmental impacts and fishery potential. We develop and use a size-based macroecological model to assess the effects of parameter uncertainty on predicted consumer biomass, production and distribution. Resulting uncertainty is large (e.g. median global biomass 4.9 billion tonnes for consumers weighing 1 g to 1000 kg; 50% uncertainty intervals of 2 to 10.4 billion tonnes; 90% uncertainty intervals of 0.3 to 26.1 billion tonnes) and driven primarily by uncertainty in trophic transfer efficiency and its relationship with predator-prey body mass ratios. Even the upper uncertainty intervals for global predictions of consumer biomass demonstrate the remarkable scarcity of marine consumers, with less than one part in 30 million by volume of the global oceans comprising tissue of macroscopic animals. Thus the apparently high densities of marine life seen in surface and coastal waters and frequently visited abundance hotspots will likely give many in society a false impression of the abundance of marine animals. Unexploited baseline biomass predictions from the simple macroecological model were used to calibrate a more complex size- and trait-based model to estimate fisheries yield and impacts. Yields are highly dependent on baseline biomass and fisheries selectivity. Predicted global sustainable fisheries yield increases ≈4 fold when smaller individuals (< 20 cm from species of maximum mass < 1 kg) are targeted in all oceans, but the predicted yields would rarely be accessible in practice and this fishing strategy leads to the collapse of larger species if fishing mortality rates on different size classes cannot be decoupled. Our analyses show that models with minimal parameter demands that are based on a few established ecological principles

  12. Predicting Consumer Biomass, Size-Structure, Production, Catch Potential, Responses to Fishing and Associated Uncertainties in the World's Marine Ecosystems.

    PubMed

    Jennings, Simon; Collingridge, Kate

    2015-01-01

    Existing estimates of fish and consumer biomass in the world's oceans are disparate. This creates uncertainty about the roles of fish and other consumers in biogeochemical cycles and ecosystem processes, the extent of human and environmental impacts and fishery potential. We develop and use a size-based macroecological model to assess the effects of parameter uncertainty on predicted consumer biomass, production and distribution. Resulting uncertainty is large (e.g. median global biomass 4.9 billion tonnes for consumers weighing 1 g to 1000 kg; 50% uncertainty intervals of 2 to 10.4 billion tonnes; 90% uncertainty intervals of 0.3 to 26.1 billion tonnes) and driven primarily by uncertainty in trophic transfer efficiency and its relationship with predator-prey body mass ratios. Even the upper uncertainty intervals for global predictions of consumer biomass demonstrate the remarkable scarcity of marine consumers, with less than one part in 30 million by volume of the global oceans comprising tissue of macroscopic animals. Thus the apparently high densities of marine life seen in surface and coastal waters and frequently visited abundance hotspots will likely give many in society a false impression of the abundance of marine animals. Unexploited baseline biomass predictions from the simple macroecological model were used to calibrate a more complex size- and trait-based model to estimate fisheries yield and impacts. Yields are highly dependent on baseline biomass and fisheries selectivity. Predicted global sustainable fisheries yield increases ≈4 fold when smaller individuals (< 20 cm from species of maximum mass < 1 kg) are targeted in all oceans, but the predicted yields would rarely be accessible in practice and this fishing strategy leads to the collapse of larger species if fishing mortality rates on different size classes cannot be decoupled. Our analyses show that models with minimal parameter demands that are based on a few established ecological principles

  13. The structure of the unstable marine boundary layer viewed by lidar and aircraft observations

    NASA Technical Reports Server (NTRS)

    Atlas, D.; Walter, B.; Chou, S.-H.; Sheu, P. J.

    1986-01-01

    The marine atmospheric boundary layer (MABL) during a cold-air outbreak off the Atlantic coast between New York and Virginia on January 20, 1983 is characterized on the basis of airborne lidar observations, vertical soundings (potential temperature, vapor mixing ratio, relative humidity, and wind), and horizontal (770-m) temperature records. The data are presented in tables and graphs and analyzed in detail. The organization of the MABL is defined by 1-2-km-scale roll vortices with up and downdrafts of 2-4 m/s at 210 m; north-south orientation of the roll axes (parallel to the low-level winds); rising arms coinciding with updrafts rich in moisture, aerosols, and heat; and 150-200-m (peak-to-trough) undulations of the inversion. Consideration is given to problems inherent in the interpretation of lidar data for MABL studies.

  14. Assessing the state of knowledge of utility-scale wind energy development and operation on non-volant terrestrial and marine wildlife

    USGS Publications Warehouse

    Lovich, Jeffrey E.; Ennen, Joshua R.

    2013-01-01

    A great deal has been published in the scientific literature regarding the effects of wind energy development and operation on volant (flying) wildlife including birds and bats, although knowledge of how to mitigate negative impacts is still imperfect. We reviewed the peer-reviewed scientific literature for information on the known and potential effects of utility-scale wind energy development and operation (USWEDO) on terrestrial and marine non-volant wildlife and found that very little has been published on the topic. Following a similar review for solar energy we identified known and potential effects due to construction and eventual decommissioning of wind energy facilities. Many of the effects are similar and include direct mortality, environmental impacts of destruction and modification of habitat including impacts of roads, and offsite impacts related to construction material acquisition, processing and transportation. Known and potential effects due to operation and maintenance of facilities include habitat fragmentation and barriers to gene flow, as well as effects due to noise, vibration and shadow flicker, electromagnetic field generation, macro- and micro-climate change, predator attraction, and increased fire risk. The scarcity of before-after-control-impact studies hinders the ability to rigorously quantify the effects of USWEDO on non-volant wildlife. We conclude that more empirical data are currently needed to fully assess the impact of USWEDO on non-volant wildlife.

  15. 76 FR 71517 - Takes of Marine Mammals During Specified Activities; Blasting Operations by the U.S. Army Corps...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-11-18

    ... blasted in 2005. A copy of the Federal Register notice of issuance for the IHA from 2003 (68 FR 32016, May 29, 2003), the IHA renewal from 2005 (70 FR 21174, April 25, 2005), and the final biological... Harbor Phase II project in 2005. NMFS issued an IHA for that operation on May 22, 2003 (68 FR 32016,...

  16. On the neural substrates leading to the emergence of mental operational structures

    NASA Technical Reports Server (NTRS)

    Ogmen, H.

    1993-01-01

    A developmental approach to the study of the emergence of mental operational structures in neural networks is presented. Neural architectures proposed to underlie the six stages of the sensory-motor period are discussed.

  17. Observations and applications of the horizontal perturbation wind field within convective structures of the marine atmospheric surface layer

    NASA Astrophysics Data System (ADS)

    Sikora, Todd D.; Young, George S.

    1994-03-01

    Studies involving radar remote sensing or modeling of the ocean/Marine Atmospheric Surface Layer (MASL) interface demand a thorough description of how coherent convective structures couple the two mediums together. The current analysis provides this information for the small-scale variability caused by boundary-layer convection. NCAR Electra 50 m above mean sea level (MSL) turbulence data from Project FIRE (First ISSCP [International Satellite Cloud Climatology Program] Regional Experiment) are conditionally sampled and composited to produce horizontal planviews of the typical perturbation horizontal wind field within these convective updrafts and downdrafts. Applications of these observational results, as well as similarly derived flux data from Sikora and Young (1993), to the above mentioned studies, are then discussed.

  18. 33 CFR 208.10 - Local flood protection works; maintenance and operation of structures and facilities.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... the grass and weeds, removal of wild growth and drift deposits, and repair of damage caused by erosion... practicable and shall be trial operated after reinstallation. Repairs requiring removal of equipment from the... debris basins, check dams, and related structures as may be necessary. (2) Operation. Both banks of...

  19. 33 CFR 208.10 - Local flood protection works; maintenance and operation of structures and facilities.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... the grass and weeds, removal of wild growth and drift deposits, and repair of damage caused by erosion... practicable and shall be trial operated after reinstallation. Repairs requiring removal of equipment from the... debris basins, check dams, and related structures as may be necessary. (2) Operation. Both banks of...

  20. Management and Operations Auditing: A Business Oriented Management Structure For a Unified School District.

    ERIC Educational Resources Information Center

    Conway, Ernest J.; And Others

    An operations audit was conducted for a school district. The purpose of the audit was to determine the organization of the central office and reorganize its structure and staff as appropriate to clearly define goals and objectives, specify roles and responsibilities, eliminate wasted or duplicated efforts, and functionally define operational work…

  1. Phylogeographic Structure in Benthic Marine Invertebrates of the Southeast Pacific Coast of Chile with Differing Dispersal Potential

    PubMed Central

    Haye, Pilar A.; Segovia, Nicolás I.; Muñoz-Herrera, Natalia C.; Gálvez, Francisca E.; Martínez, Andrea; Meynard, Andrés; Pardo-Gandarillas, María C.; Poulin, Elie; Faugeron, Sylvain

    2014-01-01

    The role of dispersal potential on phylogeographic structure, evidenced by the degree of genetic structure and the presence of coincident genetic and biogeographic breaks, was evaluated in a macrogeographic comparative approach along the north-central coast of Chile, across the biogeographic transition zone at 30°S. Using 2,217 partial sequences of the mitochondrial Cytochrome Oxidase I gene of eight benthic invertebrate species along ca. 2,600 km of coast, we contrasted dispersal potential with genetic structure and determined the concordance between genetic divergence between biogeographic regions and the biogeographic transition zone at 30°S. Genetic diversity and differentiation highly differed between species with high and low dispersal potential. Dispersal potential, sometimes together with biogeographic region, was the factor that best explained the genetic structure of the eight species. The three low dispersal species, and one species assigned to the high dispersal category, had a phylogeographic discontinuity coincident with the biogeographic transition zone at 30°S. Furthermore, coalescent analyses based on the isolation-with-migration model validate that the split between biogeographic regions north and south of 30°S has a historic origin. The signatures of the historic break in high dispersers is parsimoniously explained by the homogenizing effects of gene flow that have erased the genetic signatures, if ever existed, in high dispersers. Of the four species with structure across the break, only two had significant albeit very low levels of asymmetric migration across the transition zone. Historic processes have led to the current biogeographic and phylogeographic structure of marine species with limited dispersal along the north-central coast of Chile, with a strong lasting impact in their genetic structure. PMID:24586356

  2. Phylogeographic structure in benthic marine invertebrates of the southeast Pacific coast of Chile with differing dispersal potential.

    PubMed

    Haye, Pilar A; Segovia, Nicolás I; Muñoz-Herrera, Natalia C; Gálvez, Francisca E; Martínez, Andrea; Meynard, Andrés; Pardo-Gandarillas, María C; Poulin, Elie; Faugeron, Sylvain

    2014-01-01

    The role of dispersal potential on phylogeographic structure, evidenced by the degree of genetic structure and the presence of coincident genetic and biogeographic breaks, was evaluated in a macrogeographic comparative approach along the north-central coast of Chile, across the biogeographic transition zone at 30°S. Using 2,217 partial sequences of the mitochondrial Cytochrome Oxidase I gene of eight benthic invertebrate species along ca. 2,600 km of coast, we contrasted dispersal potential with genetic structure and determined the concordance between genetic divergence between biogeographic regions and the biogeographic transition zone at 30°S. Genetic diversity and differentiation highly differed between species with high and low dispersal potential. Dispersal potential, sometimes together with biogeographic region, was the factor that best explained the genetic structure of the eight species. The three low dispersal species, and one species assigned to the high dispersal category, had a phylogeographic discontinuity coincident with the biogeographic transition zone at 30°S. Furthermore, coalescent analyses based on the isolation-with-migration model validate that the split between biogeographic regions north and south of 30°S has a historic origin. The signatures of the historic break in high dispersers is parsimoniously explained by the homogenizing effects of gene flow that have erased the genetic signatures, if ever existed, in high dispersers. Of the four species with structure across the break, only two had significant albeit very low levels of asymmetric migration across the transition zone. Historic processes have led to the current biogeographic and phylogeographic structure of marine species with limited dispersal along the north-central coast of Chile, with a strong lasting impact in their genetic structure. PMID:24586356

  3. Anticancer effect and structure-activity analysis of marine products isolated from metabolites of mangrove fungi in the South China Sea.

    PubMed

    Tao, Li-yang; Zhang, Jian-ye; Liang, Yong-ju; Chen, Li-ming; Zhen, Li-sheng; Wang, Fang; Mi, Yan-jun; She, Zhi-gang; To, Kenneth Kin Wah; Lin, Yong-cheng; Fu, Li-wu

    2010-01-01

    Marine-derived fungi provide plenty of structurally unique and biologically active secondary metabolites. We screened 87 marine products from mangrove fungi in the South China Sea for anticancer activity by MTT assay. 14% of the compounds (11/86) exhibited a potent activity against cancer in vitro. Importantly, some compounds such as compounds 78 and 81 appeared to be promising for treating cancer patients with multidrug resistance, which should encourage more efforts to isolate promising candidates for further development as clinically useful chemotherapeutic drugs. Furthermore, DNA intercalation was not involved in their anticancer activities, as determined by DNA binding assay. On the other hand, the structure-activity analysis indicated that the hydroxyl group was important for their cytotoxic activity and that bulky functional groups such as phenyl rings could result in a loss of biological activity, which will direct the further development of marine product-based derivatives. PMID:20479969

  4. Anticancer Effect and Structure-Activity Analysis of Marine Products Isolated from Metabolites of Mangrove Fungi in the South China Sea

    PubMed Central

    Tao, Li-yang; Zhang, Jian-ye; Liang, Yong-ju; Chen, Li-ming; Zhen, Li-sheng; Wang, Fang; Mi, Yan-jun; She, Zhi-gang; To, Kenneth Kin Wah; Lin, Yong-cheng; Fu, Li-wu

    2010-01-01

    Marine-derived fungi provide plenty of structurally unique and biologically active secondary metabolites. We screened 87 marine products from mangrove fungi in the South China Sea for anticancer activity by MTT assay. 14% of the compounds (11/86) exhibited a potent activity against cancer in vitro. Importantly, some compounds such as compounds 78 and 81 appeared to be promising for treating cancer patients with multidrug resistance, which should encourage more efforts to isolate promising candidates for further development as clinically useful chemotherapeutic drugs. Furthermore, DNA intercalation was not involved in their anticancer activities, as determined by DNA binding assay. On the other hand, the structure-activity analysis indicated that the hydroxyl group was important for their cytotoxic activity and that bulky functional groups such as phenyl rings could result in a loss of biological activity, which will direct the further development of marine product-based derivatives. PMID:20479969

  5. Anticancer effect and structure-activity analysis of marine products isolated from metabolites of mangrove fungi in the South China Sea.

    PubMed

    Tao, Li-yang; Zhang, Jian-ye; Liang, Yong-ju; Chen, Li-ming; Zhen, Li-sheng; Wang, Fang; Mi, Yan-jun; She, Zhi-gang; To, Kenneth Kin Wah; Lin, Yong-cheng; Fu, Li-wu

    2010-01-01

    Marine-derived fungi provide plenty of structurally unique and biologically active secondary metabolites. We screened 87 marine products from mangrove fungi in the South China Sea for anticancer activity by MTT assay. 14% of the compounds (11/86) exhibited a potent activity against cancer in vitro. Importantly, some compounds such as compounds 78 and 81 appeared to be promising for treating cancer patients with multidrug resistance, which should encourage more efforts to isolate promising candidates for further development as clinically useful chemotherapeutic drugs. Furthermore, DNA intercalation was not involved in their anticancer activities, as determined by DNA binding assay. On the other hand, the structure-activity analysis indicated that the hydroxyl group was important for their cytotoxic activity and that bulky functional groups such as phenyl rings could result in a loss of biological activity, which will direct the further development of marine product-based derivatives.

  6. Contemporary population structure and post-glacial genetic demography in a migratory marine species, the blacknose shark, Carcharhinus acronotus.

    PubMed

    Portnoy, D S; Hollenbeck, C M; Belcher, C N; Driggers, W B; Frazier, B S; Gelsleichter, J; Grubbs, R D; Gold, J R

    2014-11-01

    Patterns of population structure and historical genetic demography of blacknose sharks in the western North Atlantic Ocean were assessed using variation in nuclear-encoded microsatellites and sequences of mitochondrial (mt)DNA. Significant heterogeneity and/or inferred barriers to gene flow, based on microsatellites and/or mtDNA, revealed the occurrence of five genetic populations localized to five geographic regions: the southeastern U.S Atlantic coast, the eastern Gulf of Mexico, the western Gulf of Mexico, Bay of Campeche in the southern Gulf of Mexico and the Bahamas. Pairwise estimates of genetic divergence between sharks in the Bahamas and those in all other localities were more than an order of magnitude higher than between pairwise comparisons involving the other localities. Demographic modelling indicated that sharks in all five regions diverged after the last glacial maximum and, except for the Bahamas, experienced post-glacial, population expansion. The patterns of genetic variation also suggest that the southern Gulf of Mexico may have served as a glacial refuge and source for the expansion. Results of the study demonstrate that barriers to gene flow and historical genetic demography contributed to contemporary patterns of population structure in a coastal migratory species living in an otherwise continuous marine habitat. The results also indicate that for many marine species, failure to properly characterize barriers in terms of levels of contemporary gene flow could in part be due to inferences based solely on equilibrium assumptions. This could lead to erroneous conclusions regarding levels of connectivity in species of conservation concern.

  7. High Genetic Diversity and Fine-Scale Spatial Structure in the Marine Flagellate Oxyrrhis marina (Dinophyceae) Uncovered by Microsatellite Loci

    PubMed Central

    Lowe, Chris D.; Montagnes, David J. S.; Martin, Laura E.; Watts, Phillip C.

    2010-01-01

    Free-living marine protists are often assumed to be broadly distributed and genetically homogeneous on large spatial scales. However, an increasing application of highly polymorphic genetic markers (e.g., microsatellites) has provided evidence for high genetic diversity and population structuring on small spatial scales in many free-living protists. Here we characterise a panel of new microsatellite markers for the common marine flagellate Oxyrrhis marina. Nine microsatellite loci were used to assess genotypic diversity at two spatial scales by genotyping 200 isolates of O. marina from 6 broad geographic regions around Great Britain and Ireland; in one region, a single 2 km shore line was sampled intensively to assess fine-scale genetic diversity. Microsatellite loci resolved between 1–6 and 7–23 distinct alleles per region in the least and most variable loci respectively, with corresponding variation in expected heterozygosities (He) of 0.00–0.30 and 0.81–0.93. Across the dataset, genotypic diversity was high with 183 genotypes detected from 200 isolates. Bayesian analysis of population structure supported two model populations. One population was distributed across all sampled regions; the other was confined to the intensively sampled shore, and thus two distinct populations co-occurred at this site. Whilst model-based analysis inferred a single UK-wide population, pairwise regional FST values indicated weak to moderate population sub-division (0.01–0.12), but no clear correlation between spatial and genetic distance was evident. Data presented in this study highlight extensive genetic diversity for O. marina; however, it remains a substantial challenge to uncover the mechanisms that drive genetic diversity in free-living microorganisms. PMID:21203414

  8. High genetic diversity and fine-scale spatial structure in the marine flagellate Oxyrrhis marina (Dinophyceae) uncovered by microsatellite loci.

    PubMed

    Lowe, Chris D; Montagnes, David J S; Martin, Laura E; Watts, Phillip C

    2010-01-01

    Free-living marine protists are often assumed to be broadly distributed and genetically homogeneous on large spatial scales. However, an increasing application of highly polymorphic genetic markers (e.g., microsatellites) has provided evidence for high genetic diversity and population structuring on small spatial scales in many free-living protists. Here we characterise a panel of new microsatellite markers for the common marine flagellate Oxyrrhis marina. Nine microsatellite loci were used to assess genotypic diversity at two spatial scales by genotyping 200 isolates of O. marina from 6 broad geographic regions around Great Britain and Ireland; in one region, a single 2 km shore line was sampled intensively to assess fine-scale genetic diversity. Microsatellite loci resolved between 1-6 and 7-23 distinct alleles per region in the least and most variable loci respectively, with corresponding variation in expected heterozygosities (H(e)) of 0.00-0.30 and 0.81-0.93. Across the dataset, genotypic diversity was high with 183 genotypes detected from 200 isolates. Bayesian analysis of population structure supported two model populations. One population was distributed across all sampled regions; the other was confined to the intensively sampled shore, and thus two distinct populations co-occurred at this site. Whilst model-based analysis inferred a single UK-wide population, pairwise regional F(ST) values indicated weak to moderate population sub-division (0.01-0.12), but no clear correlation between spatial and genetic distance was evident. Data presented in this study highlight extensive genetic diversity for O. marina; however, it remains a substantial challenge to uncover the mechanisms that drive genetic diversity in free-living microorganisms.

  9. Contemporary population structure and post-glacial genetic demography in a migratory marine species, the blacknose shark, Carcharhinus acronotus.

    PubMed

    Portnoy, D S; Hollenbeck, C M; Belcher, C N; Driggers, W B; Frazier, B S; Gelsleichter, J; Grubbs, R D; Gold, J R

    2014-11-01

    Patterns of population structure and historical genetic demography of blacknose sharks in the western North Atlantic Ocean were assessed using variation in nuclear-encoded microsatellites and sequences of mitochondrial (mt)DNA. Significant heterogeneity and/or inferred barriers to gene flow, based on microsatellites and/or mtDNA, revealed the occurrence of five genetic populations localized to five geographic regions: the southeastern U.S Atlantic coast, the eastern Gulf of Mexico, the western Gulf of Mexico, Bay of Campeche in the southern Gulf of Mexico and the Bahamas. Pairwise estimates of genetic divergence between sharks in the Bahamas and those in all other localities were more than an order of magnitude higher than between pairwise comparisons involving the other localities. Demographic modelling indicated that sharks in all five regions diverged after the last glacial maximum and, except for the Bahamas, experienced post-glacial, population expansion. The patterns of genetic variation also suggest that the southern Gulf of Mexico may have served as a glacial refuge and source for the expansion. Results of the study demonstrate that barriers to gene flow and historical genetic demography contributed to contemporary patterns of population structure in a coastal migratory species living in an otherwise continuous marine habitat. The results also indicate that for many marine species, failure to properly characterize barriers in terms of levels of contemporary gene flow could in part be due to inferences based solely on equilibrium assumptions. This could lead to erroneous conclusions regarding levels of connectivity in species of conservation concern. PMID:25294029

  10. Modeling environmental effects on the size-structured energy flow through marine ecosystems. Part 2: Simulations

    NASA Astrophysics Data System (ADS)

    Maury, Olivier; Shin, Yunne-Jai; Faugeras, Blaise; Ben Ari, Tamara; Marsac, Francis

    2007-09-01

    Numerical simulations using a physiologically-based model of marine ecosystem size spectrum are conducted to study the influence of primary production and temperature on energy flux through marine ecosystems. In stable environmental conditions, the model converges toward a stationary linear log-log size-spectrum. In very productive ecosystems, the model predicts that small size classes are depleted by predation, leading to a curved size-spectrum. It is shown that the absolute level of primary production does not affect the slope of the stationary size-spectrum but has a nonlinear effect on its intercept and hence on the total biomass of consumer organisms (the carrying capacity). Three domains are distinguished: at low primary production, total biomass is independent from production changes because loss processes dominate dissipative processes (biological work); at high production, ecosystem biomass is proportional to primary production because dissipation dominates losses; an intermediate transition domain characterizes mid-production ecosystems. Our results enlighten the paradox of the very high ecosystem biomass/primary production ratios which are observed in poor oceanic regions. Thus, maximal dissipation (least action and low ecosystem biomass/primary production ratios) is reached at high primary production levels when the ecosystem is efficient in transferring energy from small sizes to large sizes. Conversely, least dissipation (most action and high ecosystem biomass/primary production ratios) characterizes the simulated ecosystem at low primary production levels when it is not efficient in dissipating energy. Increasing temperature causes enhanced predation mortality and decreases the intercept of the stationary size spectrum, i.e., the total ecosystem biomass. Total biomass varies as the inverse of the Arrhenius coefficient in the loss domain. This approximation is no longer true in the dissipation domain where nonlinear dissipation processes dominate over

  11. Shifts in Microbial Community Structure with Changes in Cathodic Potential in Marine Sediment Microcosms

    NASA Astrophysics Data System (ADS)

    Lam, B. R.; Rowe, A. R.; Nealson, K. H.

    2014-12-01

    Microorganisms comprise more than 90% of the biomass of the ocean. Their ability to thrive and survive in a wide range of environments from oligotrophic waters to the deep subsurface stems from the great metabolic versatility that exists among them. This metabolic versatility has further expanded with the discovery of extracellular electron transport (EET). EET is the capability of microorganisms to transfer electrons to and from insoluble substrates outside of the cell. Much of what is known about EET comes from studies of model metal reducing microorganisms in the groups Shewanellaceae and Geobacteraceae. However, EET is not limited to these metal reducing microorganisms, and may play a large role in the biogeochemical cycling of several elements. We have developed an electrochemical culturing technique designed to target microorganisms with EET ability and tested these methods in marine sediments. The use of electrodes allows for greater control and quantification of electrons flowing to insoluble substrates as opposed to insoluble substrates such as minerals that are often difficult to measure. We have recently shown that poising electrodes at different redox potentials will enrich for different microbial groups and thus possible metabolisms. In marine sediment microcosms, triplicate electrodes were poised at different cathodic (electron donating) potentials (-300, -400, -500 and -600 mV) and incubated for eight weeks. Community analysis of the 16S rRNA revealed that at lower negative potentials (-500 and -600 mV), more sulfate reducing bacteria in the class Deltaproteobacteria were enriched in comparison to the communities at -300 and -400 mV being dominated by microorganisms within Alphaproteobacteria, Gammaproteobacteria, and Clostridia. This can be explained by sulfate (abundant in seawater) becoming a more energetically favorable electron acceptor with lower applied potentials. In addition, communities at higher potentials showed greater enrichment of the

  12. Glycosides from marine sponges (Porifera, Demospongiae): structures, taxonomical distribution, biological activities and biological roles.

    PubMed

    Kalinin, Vladimir I; Ivanchina, Natalia V; Krasokhin, Vladimir B; Makarieva, Tatyana N; Stonik, Valentin A

    2012-08-01

    Literature data about glycosides from sponges (Porifera, Demospongiae) are reviewed. Structural diversity, biological activities, taxonomic distribution and biological functions of these natural products are discussed.

  13. Glycosides from Marine Sponges (Porifera, Demospongiae): Structures, Taxonomical Distribution, Biological Activities and Biological Roles

    PubMed Central

    Kalinin, Vladimir I.; Ivanchina, Natalia V.; Krasokhin, Vladimir B.; Makarieva, Tatyana N.; Stonik, Valentin A.

    2012-01-01

    Literature data about glycosides from sponges (Porifera, Demospongiae) are reviewed. Structural diversity, biological activities, taxonomic distribution and biological functions of these natural products are discussed. PMID:23015769

  14. Spatial analysis of nuclear and cytoplasmic DNA diversity in wild sea beet (Beta vulgaris ssp. maritima) populations: do marine currents shape the genetic structure?

    PubMed

    Fievet, Virgil; Touzet, Pascal; Arnaud, Jean-François; Cuguen, Joël

    2007-05-01

    Patterns of seed dispersal in the wild sea beet (Beta vulgaris ssp. maritima) are predicted to be influenced by marine currents because populations are widely distributed along the European Atlantic coast. We investigated the potential influence of marine currents on the pattern of spatial genetic structuring in natural populations of sea beet. Populations were located along the French coasts of the Anglo-Norman gulf that features peculiar marine currents in the Channel. Thirty-three populations were sampled, among which 23 were continental and 10 were insular populations located in Jersey, Guernsey and Chausey, for a total of 1224 plants genotyped. To validate the coastal topography influence and the possibility of marine current orientated gene flow on the genetic features of sea beet populations, we assessed patterns of genetic structuring of cytoplasmic and nuclear diversity by: (i) searching for an isolation-by-distance (IBD) pattern using spatial autocorrelation tools; (ii) using the Monmonier algorithm to identify genetic boundaries in the area studied; and (iii) performing assignment tests that are based on multilocus genotype information to ascertain population membership of individuals. Our results showed a highly contrasted cytoplasmic and nuclear genetic differentiation and highlighted the peculiar situation of island populations. Beyond a classical isolation-by-distance due to short-range dispersal, genetic barriers fitting the orientation of marine currents were clearly identified. This suggests the occurrence of long-distance seed dispersal events and an asymmetrical gene flow separating the eastern and western part of the Anglo-Norman gulf.

  15. Computational analysis of wake structure and body forces on marine animal research tag

    NASA Astrophysics Data System (ADS)

    Rosanio, Matthew; Morrida, Jacob; Green, Melissa

    2013-11-01

    The Acousounde 3B marine animal research tag is used to study the relationship between the sounds made by whales and their behaviors, and ultimately to improve whale conservation efforts. In practical implementation, some researchers have attached external GPS Fastloc devices to the top surface of the tag, in order to accurately record the position of the whales throughout the deployment. There is a need to characterize the flow over the tag in order to better understand the body forces being exerted on it and how wake turbulence could affect noise measurements. The addition of the GPS Fastloc exacerbates both of these concerns, as it complicates the hydrodynamics of the device. Using CFD techniques, we were able to simulate the flow over the tag with a GPS attachment at multiple yaw angles. We used Pointwise to construct the mesh and Fluent to simulate the flow. We have also used flow visualization to experimentally validate our computational results. It was found that the GPS has a minimal effect on the wake of the tag at a 0 degree offset from the freestream flow. However, at increasing offset angles, the presence of the GPS greatly increased the amount of wake turbulence observed. Performed work while undergrad at Syracuse.

  16. Sulfated polysaccharide fraction from marine algae Solieria filiformis: Structural characterization, gastroprotective and antioxidant effects.

    PubMed

    Sousa, Willer M; Silva, Renan O; Bezerra, Francisco F; Bingana, Rudy D; Barros, Francisco Clark N; Costa, Luís E C; Sombra, Venicios G; Soares, Pedro M G; Feitosa, Judith P A; de Paula, Regina C M; Souza, Marcellus H L P; Barbosa, André Luiz R; Freitas, Ana Lúcia P

    2016-11-01

    A sulfated polysaccharide (SFP) fraction from the marine alga Solieria filiformis was extracted and submitted to microanalysis, molar mass estimation and spectroscopic analysis. We evaluated its gastroprotective potential in vivo in an ethanol-induced gastric damage model and its in vitro antioxidant properties (DPPH, chelating ferrous ability and total antioxidant capacity). Its chemical composition revealed to be essentially an iota-carrageenan with a molar mass of 210.9kDa and high degree of substitution for sulfate groups (1.08). In vivo, SFP significantly (P<0.05) reduced, in a dose dependent manner, the ethanol-induced gastric damage. SFP prevents glutathione consume and increase of malondialdehyde and hemoglobin levels. SFP presented an IC50 of 1.77mg/mL in scavenging DPPH. The chelating ferrous ability was 38.98%, and the total antioxidant capacity was 2.01mg/mL. Thus, SFP prevents the development of ethanol-induced gastric damage by reducing oxidative stress in vivo and possesses relevant antioxidant activity in vitro.

  17. Sulfated polysaccharide fraction from marine algae Solieria filiformis: Structural characterization, gastroprotective and antioxidant effects.

    PubMed

    Sousa, Willer M; Silva, Renan O; Bezerra, Francisco F; Bingana, Rudy D; Barros, Francisco Clark N; Costa, Luís E C; Sombra, Venicios G; Soares, Pedro M G; Feitosa, Judith P A; de Paula, Regina C M; Souza, Marcellus H L P; Barbosa, André Luiz R; Freitas, Ana Lúcia P

    2016-11-01

    A sulfated polysaccharide (SFP) fraction from the marine alga Solieria filiformis was extracted and submitted to microanalysis, molar mass estimation and spectroscopic analysis. We evaluated its gastroprotective potential in vivo in an ethanol-induced gastric damage model and its in vitro antioxidant properties (DPPH, chelating ferrous ability and total antioxidant capacity). Its chemical composition revealed to be essentially an iota-carrageenan with a molar mass of 210.9kDa and high degree of substitution for sulfate groups (1.08). In vivo, SFP significantly (P<0.05) reduced, in a dose dependent manner, the ethanol-induced gastric damage. SFP prevents glutathione consume and increase of malondialdehyde and hemoglobin levels. SFP presented an IC50 of 1.77mg/mL in scavenging DPPH. The chelating ferrous ability was 38.98%, and the total antioxidant capacity was 2.01mg/mL. Thus, SFP prevents the development of ethanol-induced gastric damage by reducing oxidative stress in vivo and possesses relevant antioxidant activity in vitro. PMID:27516258

  18. Relationship between structures of substituted indolic compounds and their degradation by marine anaerobic microorganisms.

    PubMed

    Gu, Ji-Dong; Fan, Yanzhen; Shi, Hanchang

    2002-01-01

    Degradation of selected indolic compounds including indole, 1-methylindole, 2-methylindole, and 3-methylindole was assessed under methanogenic and sulfate-reducing conditions using the serum-bottle anaerobic technique and marine sediment from Victoria Harbour, Hong Kong as an inoculum. Our results showed that indole degradation was achieved in 28 days by a methanogenic consortium and 35 days by a sulfate-reducing consortium. During degradation under both conditions, two intermediates were isolated, purified and identified as oxindole and isatin (indole-2,3-dione) suggesting that both methanogenic and sulfate-reducing bacteria use an identical degradation pathway. Degradation processes followed two steps of oxidation accomplished by hydroxylation and then dehydrogenation at 2- and then 3-position sequentially prior to the cleavage of the pyrrole ring between 2- and 3-positions. However, none of 1-methylindole or 2-methylindole was degraded under any conditions. 3-Methylindole (3-methyl-1H-indole, skatole) was transformed under methanogenic conditions and mineralized only under sulfate-reducing conditions. It is clear that methyl substitution on 1- or 2-position inhibits the initial attack by hydroxylation enzymes making them more persistent in the environment and posing longer toxic impact.

  19. Population Structure and Adaptive Divergence in a High Gene Flow Marine Fish: The Small Yellow Croaker (Larimichthys polyactis).

    PubMed

    Liu, Bing-Jian; Zhang, Bai-Dong; Xue, Dong-Xiu; Gao, Tian-Xiang; Liu, Jin-Xian

    2016-01-01

    The spatial distribution of genetic diversity has been long considered as a key component of policy development for management and conservation of marine fishes. However, unraveling the population genetic structure of migratory fish species is challenging due to high potential for gene flow. Despite the shallow population differentiation revealed by putatively neutral loci, the higher genetic differentiation with panels of putatively adaptive loci could provide greater resolution for stock identification. Here, patterns of population differentiation of small yellow croaker (Larimichthys polyactis) were investigated by genotyping 15 highly polymorphic microsatellites in 337 individuals of 15 geographic populations collected from both spawning and overwintering grounds. Outlier analyses indicated that the locus Lpol03 might be under directional selection, which showed a strong homology with Grid2 gene encoding the glutamate receptor δ2 protein (GluRδ2). Based on Lpol03, two distinct clusters were identified by both STRUCTURE and PCoA analyses, suggesting that there were two overwintering aggregations of L. polyactis. A novel migration pattern was suggested for L. polyactis, which was inconsistent with results of previous studies based on historical fishing yield statistics. These results provided new perspectives on the population genetic structure and migratory routes of L. polyactis, which could have significant implications for sustainable management and utilization of this important fishery resource. PMID:27100462

  20. The role of epibenthic predators in structuring the marine invertebrate community of a British coastal salt marsh

    NASA Astrophysics Data System (ADS)

    Frid, C. L. J.; James, R.

    The marine fauna of salt marshes are subjected to predation by birds, tidally feeding flatfish, crabs, prawns and small gobiid fish. The role of these epibenthic predators in structuring the community was investigated using cages to exclude predators. A range of designs of cages and partial cages was employed to control for artefacts due to caging, and sufficient cages were employed so that each cage was only sampled once to prevent the compounding of disturbance due to predation and sampling. Two mesh sizes were employed, a fine mesh excluding epibenthic predators and a coarse mesh allowing access by small crabs, prawns and gobiid fish but excluding birds and larger fish. The exclusion was maintained for 2 years. The presence of any experimental structure had a significant effect on the sedimentary regime within the cage. Epibentic predator exclusion let to an increase in infaunal predator density, but had no significant effect on the infaunal deposit feeders. There was some evidence that predators limit the surface deposit feeding gastropood Hydrobia ulvae during the winter. The gastropod Littorina littorea responded positively to the presence of any caging structure; this may be the result of changes in the availability of food, as the sides of a cage support a diatom flora which this species can exploit. The lack of a response from the infaunal deposit feeders is attributed to their horizontal mobility within the sediment. The possible interactions between epibenthic and infaunal predators are discussed.

  1. Population Structure and Adaptive Divergence in a High Gene Flow Marine Fish: The Small Yellow Croaker (Larimichthys polyactis)

    PubMed Central

    Xue, Dong-Xiu; Gao, Tian-Xiang; Liu, Jin-Xian

    2016-01-01

    The spatial distribution of genetic diversity has been long considered as a key component of policy development for management and conservation of marine fishes. However, unraveling the population genetic structure of migratory fish species is challenging due to high potential for gene flow. Despite the shallow population differentiation revealed by putatively neutral loci, the higher genetic differentiation with panels of putatively adaptive loci could provide greater resolution for stock identification. Here, patterns of population differentiation of small yellow croaker (Larimichthys polyactis) were investigated by genotyping 15 highly polymorphic microsatellites in 337 individuals of 15 geographic populations collected from both spawning and overwintering grounds. Outlier analyses indicated that the locus Lpol03 might be under directional selection, which showed a strong homology with Grid2 gene encoding the glutamate receptor δ2 protein (GluRδ2). Based on Lpol03, two distinct clusters were identified by both STRUCTURE and PCoA analyses, suggesting that there were two overwintering aggregations of L. polyactis. A novel migration pattern was suggested for L. polyactis, which was inconsistent with results of previous studies based on historical fishing yield statistics. These results provided new perspectives on the population genetic structure and migratory routes of L. polyactis, which could have significant implications for sustainable management and utilization of this important fishery resource. PMID:27100462

  2. Structural basis for the slow photocycle and late proton release in Acetabularia rhodopsin I from the marine plant Acetabularia acetabulum.

    PubMed

    Furuse, Munenori; Tamogami, Jun; Hosaka, Toshiaki; Kikukawa, Takashi; Shinya, Naoko; Hato, Masakatsu; Ohsawa, Noboru; Kim, So Young; Jung, Kwang Hwan; Demura, Makoto; Miyauchi, Seiji; Kamo, Naoki; Shimono, Kazumi; Kimura-Someya, Tomomi; Yokoyama, Shigeyuki; Shirouzu, Mikako

    2015-11-01

    Although many crystal structures of microbial rhodopsins have been solved, those with sufficient resolution to identify the functional water molecules are very limited. In this study, the Acetabularia rhodopsin I (ARI) protein derived from the marine alga A. acetabulum was synthesized on a large scale by the Escherichia coli cell-free membrane-protein production method, and crystal structures of ARI were determined at the second highest (1.52-1.80 Å) resolution for a microbial rhodopsin, following bacteriorhodopsin (BR). Examinations of the photochemical properties of ARI revealed that the photocycle of ARI is slower than that of BR and that its proton-transfer reactions are different from those of BR. In the present structures, a large cavity containing numerous water molecules exists on the extracellular side of ARI, explaining the relatively low pKa of Glu206(ARI), which cannot function as an initial proton-releasing residue at any pH. An interhelical hydrogen bond exists between Leu97(ARI) and Tyr221(ARI) on the cytoplasmic side, which facilitates the slow photocycle and regulates the pKa of Asp100(ARI), a potential proton donor to the Schiff base, in the dark state.

  3. Population Structure and Adaptive Divergence in a High Gene Flow Marine Fish: The Small Yellow Croaker (Larimichthys polyactis).

    PubMed

    Liu, Bing-Jian; Zhang, Bai-Dong; Xue, Dong-Xiu; Gao, Tian-Xiang; Liu, Jin-Xian

    2016-01-01

    The spatial distribution of genetic diversity has been long considered as a key component of policy development for management and conservation of marine fishes. However, unraveling the population genetic structure of migratory fish species is challenging due to high potential for gene flow. Despite the shallow population differentiation revealed by putatively neutral loci, the higher genetic differentiation with panels of putatively adaptive loci could provide greater resolution for stock identification. Here, patterns of population differentiation of small yellow croaker (Larimichthys polyactis) were investigated by genotyping 15 highly polymorphic microsatellites in 337 individuals of 15 geographic populations collected from both spawning and overwintering grounds. Outlier analyses indicated that the locus Lpol03 might be under directional selection, which showed a strong homology with Grid2 gene encoding the glutamate receptor δ2 protein (GluRδ2). Based on Lpol03, two distinct clusters were identified by both STRUCTURE and PCoA analyses, suggesting that there were two overwintering aggregations of L. polyactis. A novel migration pattern was suggested for L. polyactis, which was inconsistent with results of previous studies based on historical fishing yield statistics. These results provided new perspectives on the population genetic structure and migratory routes of L. polyactis, which could have significant implications for sustainable management and utilization of this important fishery resource.

  4. Experimental/Numerical Comparison of Turbine Efficiency and Wake Structure in an Array of 3 Scale-Model Marine Hydrokinetic Turbines

    NASA Astrophysics Data System (ADS)

    Sale, Danny; Bates, John; Polagye, Brian; Aliseda, Alberto

    2015-11-01

    Numerical simulations and experiments are conducted for axial-flow Marine Hydro-Kinetic (MHK) turbines operating in a flume. This study aims to understand the influence of coherent structures in high Reynolds number wakes on energy extraction and dynamical rotor control processes. In experiments, rotor torque and rotational position measurements are collected, and the flow field characterized by simultaneous imaging with particle image velocimetry. The performance of 3 turbines are characterized under varying downstream spacing and lateral offsets. To study effects of unsteady hydrodynamics, the turbines are outfitted with open-loop and close-loop feedback controls and compared to the case of uncontrolled rotor. In numerical simulations, different tiers of turbine models are evaluated to discern tradeoffs in fidelity to physics versus cost. Analogous ``actuator methods'' are included from Large-Eddy-Simulations and Reynolds-Averaged-Navier-Stokes, where the models impose body forces upon the flow field in form of disks, lines, or surfaces. An aeroelastic model coupled to LES predicts the dynamical response of rotors to upstream wakes and ambient turbulence. These comparative studies inform how simulations can be scaled up to inform design of utility-scale MHK power plants.

  5. The role of crystal structure and fabrics in early diagenesis: examples from continental and marine settings

    NASA Astrophysics Data System (ADS)

    Frisia, Silvia; Borsato, Andrea; Bajo, Petra; Hellstrom, John

    2015-04-01

    previously documented in marine facies. In speleothems, the process comes to a halt if the flow of the diagenetic fluid stops, which commonly happens when a new "impermeable" layer is formed atop the partially replaced aragonite. Yet, if dripwaters are allowed to percolate through crystal boundaries, the aragonite below can be completely replaced by a mosaic of calcite and geochemical properties re-set. Preservation of the original fabric, or part of it, is then influenced by both the "exhaustion" of the diagenetic fluid and the presence of organic carbon surfaces. Speleothem diagenetic pathways are not dissimilar to what occurs in the marine environment. Primary and early diagenetic dolomites seem to be preserved in some Triassic sabkha facies, being "protected" by clay or organic layers. In other "early diagenetic dolomites", such as the case of the Early Pliocene makatea reef terraces (Cook Islands, South Pacific), original, highly porous facies were replaced by a mosaic of fabric-destructive dolomite with a few relicts of organic-rich micrite. Thus, original fabric and porosity, crystal defects, crystal boundaries and presence of organic matter in carbonates dictate the diagenetic pathways, while the composition of the diagenetic fluids and the duration of the diagenetic process control the extent of geochemical re-setting of the system.

  6. Trophic versus structural effects of a marine foundation species, giant kelp (Macrocystis pyrifera).

    PubMed

    Miller, Robert J; Page, Henry M; Reed, Daniel C

    2015-12-01

    Foundation species create milieus in which ecosystems evolve, altering species abundances and distribution often to a dramatic degree. Although much descriptive work supports their importance, there remains little definitive information on the mechanisms by which foundation species alter their environment. These mechanisms fall into two basic categories: provision of food or other materials, and modification of the physical environment. Here, we manipulated the abundance of a marine foundation species, the giant kelp Macrocystis pyrifera, in 40 × 40-m plots at Mohawk Reef off Santa Barbara, California and found that its biomass had a strong positive effect on the abundance of bottom-dwelling sessile invertebrates. We examined the carbon (C) stable isotope values of seven species of sessile invertebrates in the treatment plots to test the hypothesis that this positive effect resulted from a nutritional supplement of small suspended particles of kelp detritus, as many studies have posited. We found no evidence from stable isotope analyses to support the hypothesis that kelp detritus is an important food source for sessile suspension-feeding invertebrates. The isotope composition of invertebrates varied with species and season, but was not affected by kelp biomass, with the exception of two species: the tunicate Styela montereyensis, which exhibited a slight enrichment in C stable isotope composition with increasing kelp biomass, and the hydroid Aglaophenia sp., which showed the opposite effect. These results suggest that modification of the physical habitat, rather than nutritional subsidy by kelp detritus, likely accounts for increased abundance of sessile invertebrates within giant kelp forests. PMID:26358195

  7. Seasonal patterns of population structure in a colonial marine invertebrate (Bugula stolonifera, Bryozoa).

    PubMed

    Johnson, Collin H; Woollacott, Robert M

    2012-06-01

    For sessile invertebrates, the degree to which dispersal mechanisms transport individuals away from their natal grounds can have significant ecological implications. Even though the larvae of the marine bryozoan Bugula stolonifera have limited dispersal potential, high levels of genetic mixing have been found within their conspecific aggregations. In this study, we investigated whether this high mixing within aggregations of B. stolonifera also resulted in high mixing between aggregations. Adult colonies were collected from five sites within and one site outside of Eel Pond, Woods Hole, Massachusetts, in August 2009 and genotyped at 10 microsatellite loci. Significant genotypic differentiation was found between most sites, suggesting limited connectivity across sites, even those separated by only 100 m. This investigation was extended to determine if low levels of genetic mixing throughout the reproductive season could result in increased homogeneity between sites. Four of the five sites in Eel Pond were sampled early, mid-, and late in the reproductive season in 2010, and again in early 2011. Inter- and intra-annual genotypic differentiation was then assessed within and between sites. Results from these analyses document that low levels of mixing could result in increased homogeneity between some aggregations, but that barriers to genetic exchange prevented mixing between most sites. Further, results from inter-annual comparisons within sites suggest that any potential homogeneity achieved throughout the reproductive season will likely be lost by the beginning of the next reproductive season due to the annual cycle of colony die-back and regrowth experienced by B. stolonifera colonies in Eel Pond.

  8. Size structure of marine soft-bottom macrobenthic communities across natural habitat gradients: implications for productivity and ecosystem function.

    PubMed

    Macdonald, Tara A; Burd, Brenda J; van Roodselaar, Albert

    2012-01-01

    Size distributions of biotic assemblages are important modifiers of productivity and function in marine sediments. We investigated the distribution of proportional organic biomass among logarithmic size classes (2(-6)J to 2(16)J) in the soft-bottom macrofaunal communities of the Strait of Georgia, Salish Sea on the west coast of Canada. The study examines how size structure is influenced by 3 fundamental habitat descriptors: depth, sediment percent fines, and organic flux (modified by quality). These habitat variables are uncorrelated in this hydrographically diverse area, thus we examine their effects in combination and separately. Cluster analyses and cumulative biomass size spectra reveal clear and significant responses to each separate habitat variable. When combined, habitat factors result in three distinct assemblages: (1) communities with a high proportion of biomass in small organisms, typical of shallow areas (<10 m) with coarse sediments (<10% fines) and low accumulation of organic material (<3.0 gC/m(2)/yr/δ(15)N); (2) communities with high proportion of biomass in the largest organisms found in the Strait, typical of deep, fine sediments with high modified organic flux (>3 g C/m(2)/yr/δ(15)N) from the Fraser River; and (3) communities with biomass dominated by moderately large organisms, but lacking the smallest and largest size classes, typical of deep, fine sediments experiencing low modified organic flux (<3.0 gC/m(2)/yr/δ(15)N). The remaining assemblages had intermediate habitat types and size structures. Sediment percent fines and flux appear to elicit threshold responses in size structure, whereas depth has the most linear influence on community size structure. The ecological implications of size structure in the Strait of Georgia relative to environmental conditions, secondary production and sediment bioturbation are discussed. PMID:22911694

  9. Size structure of marine soft-bottom macrobenthic communities across natural habitat gradients: implications for productivity and ecosystem function.

    PubMed

    Macdonald, Tara A; Burd, Brenda J; van Roodselaar, Albert

    2012-01-01

    Size distributions of biotic assemblages are important modifiers of productivity and function in marine sediments. We investigated the distribution of proportional organic biomass among logarithmic size classes (2(-6)J to 2(16)J) in the soft-bottom macrofaunal communities of the Strait of Georgia, Salish Sea on the west coast of Canada. The study examines how size structure is influenced by 3 fundamental habitat descriptors: depth, sediment percent fines, and organic flux (modified by quality). These habitat variables are uncorrelated in this hydrographically diverse area, thus we examine their effects in combination and separately. Cluster analyses and cumulative biomass size spectra reveal clear and significant responses to each separate habitat variable. When combined, habitat factors result in three distinct assemblages: (1) communities with a high proportion of biomass in small organisms, typical of shallow areas (<10 m) with coarse sediments (<10% fines) and low accumulation of organic material (<3.0 gC/m(2)/yr/δ(15)N); (2) communities with high proportion of biomass in the largest organisms found in the Strait, typical of deep, fine sediments with high modified organic flux (>3 g C/m(2)/yr/δ(15)N) from the Fraser River; and (3) communities with biomass dominated by moderately large organisms, but lacking the smallest and largest size classes, typical of deep, fine sediments experiencing low modified organic flux (<3.0 gC/m(2)/yr/δ(15)N). The remaining assemblages had intermediate habitat types and size structures. Sediment percent fines and flux appear to elicit threshold responses in size structure, whereas depth has the most linear influence on community size structure. The ecological implications of size structure in the Strait of Georgia relative to environmental conditions, secondary production and sediment bioturbation are discussed.

  10. Fine-scale genetic population structure in a mobile marine mammal: inshore bottlenose dolphins in Moreton Bay, Australia.

    PubMed

    Ansmann, Ina C; Parra, Guido J; Lanyon, Janet M; Seddon, Jennifer M

    2012-09-01

    Highly mobile marine species in areas with no obvious geographic barriers are expected to show low levels of genetic differentiation. However, small-scale variation in habitat may lead to resource polymorphisms and drive local differentiation by adaptive divergence. Using nuclear microsatellite genotyping at 20 loci, and mitochondrial control region sequencing, we investigated fine-scale population structuring of inshore bottlenose dolphins (Tursiops aduncus) inhabiting a range of habitats in and around Moreton Bay, Australia. Bayesian structure analysis identified two genetic clusters within Moreton Bay, with evidence of admixture between them (F(ST) = 0.05, P = 0.001). There was only weak isolation by distance but one cluster of dolphins was more likely to be found in shallow southern areas and the other in the deeper waters of the central northern bay. In further analysis removing admixed individuals, southern dolphins appeared genetically restricted with lower levels of variation (AR = 3.252, π = 0.003) and high mean relatedness (r = 0.239) between individuals. In contrast, northern dolphins were more diverse (AR = 4.850, π = 0.009) and were mixing with a group of dolphins outside the bay (microsatellite-based STRUCTURE analysis), which appears to have historically been distinct from the bay dolphins (mtDNA Φ(ST) = 0.272, P < 0.001). This study demonstrates the ability of genetic techniques to expose fine-scale patterns of population structure and explore their origins and mechanisms. A complex variety of inter-related factors including local habitat variation, differential resource use, social behaviour and learning, and anthropogenic disturbances are likely to have played a role in driving fine-scale population structure among bottlenose dolphins in Moreton Bay.

  11. Size Structure of Marine Soft-Bottom Macrobenthic Communities across Natural Habitat Gradients: Implications for Productivity and Ecosystem Function

    PubMed Central

    Macdonald, Tara A.; Burd, Brenda J.; van Roodselaar, Albert

    2012-01-01

    Size distributions of biotic assemblages are important modifiers of productivity and function in marine sediments. We investigated the distribution of proportional organic biomass among logarithmic size classes (2−6J to 216J) in the soft-bottom macrofaunal communities of the Strait of Georgia, Salish Sea on the west coast of Canada. The study examines how size structure is influenced by 3 fundamental habitat descriptors: depth, sediment percent fines, and organic flux (modified by quality). These habitat variables are uncorrelated in this hydrographically diverse area, thus we examine their effects in combination and separately. Cluster analyses and cumulative biomass size spectra reveal clear and significant responses to each separate habitat variable. When combined, habitat factors result in three distinct assemblages: (1) communities with a high proportion of biomass in small organisms, typical of shallow areas (<10 m) with coarse sediments (<10% fines) and low accumulation of organic material (<3.0 gC/m2/yr/δ15N); (2) communities with high proportion of biomass in the largest organisms found in the Strait, typical of deep, fine sediments with high modified organic flux (>3 g C/m2/yr/δ15N) from the Fraser River; and (3) communities with biomass dominated by moderately large organisms, but lacking the smallest and largest size classes, typical of deep, fine sediments experiencing low modified organic flux (<3.0 gC/m2/yr/δ15N). The remaining assemblages had intermediate habitat types and size structures. Sediment percent fines and flux appear to elicit threshold responses in size structure, whereas depth has the most linear influence on community size structure. The ecological implications of size structure in the Strait of Georgia relative to environmental conditions, secondary production and sediment bioturbation are discussed. PMID:22911694

  12. Amphiphilic triblock copolymers with PEGylated hydrocarbon structures as environmentally friendly marine antifouling and fouling-release coatings.

    PubMed

    Zhou, Zhaoli; Calabrese, David R; Taylor, Warren; Finlay, John A; Callow, Maureen E; Callow, James A; Fischer, Daniel; Kramer, Edward J; Ober, Christopher K

    2014-01-01

    The ideal marine antifouling (AF)/fouling-release (FR) coating should be non-toxic, while effectively either resisting the attachment of marine organisms (AF) or significantly reducing their strength of attachment (FR). Many recent studies have shown that amphiphilic polymeric materials provide a promising solution to producing such coatings due to their surface dual functionality. In this work, poly(ethylene glycol) (PEG) of different molecular weights (Mw = 350, 550) was coupled to a saturated difunctional alkyl alcohol to generate amphiphilic surfactants (PEG-hydrocarbon-OH). The resulting macromolecules were then used as side chains to covalently modify a pre-synthesized PS8 K-b-P(E/B)25 K-b-PI10 K (SEBI or K3) triblock copolymer, and the final polymers were applied to glass substrata through an established multilayer surface coating technique to prepare fouling resistant coatings. The coated surfaces were characterized with AFM, XPS and NEXAFS, and evaluated in laboratory assays with two important fouling algae, Ulva linza (a green macroalga) and Navicula incerta, a biofilm-forming diatom. The results suggest that these polymer-coated surfaces undergo surface reconstruction upon changing the contact medium (polymer/air vs polymer/water), due to the preferential interfacial aggregation of the PEG segment on the surface in water. The amphiphilic polymer-coated surfaces showed promising results as both AF and FR coatings. The sample with longer PEG chain lengths (Mw = 550 g mol(-1)) exhibited excellent properties against both algae, highlighting the importance of the chemical structures on ultimate biological performance. Besides reporting synthesis and characterization of this new type of amphiphilic surface material, this work also provides insight into the nature of PEG/hydrocarbon amphiphilic coatings, and this understanding may help in the design of future generations of fluorine-free, environmentally friendly AF/FR polymeric coatings. PMID:24730510

  13. Amphiphilic triblock copolymers with PEGylated hydrocarbon structures as environmentally friendly marine antifouling and fouling-release coatings.

    PubMed

    Zhou, Zhaoli; Calabrese, David R; Taylor, Warren; Finlay, John A; Callow, Maureen E; Callow, James A; Fischer, Daniel; Kramer, Edward J; Ober, Christopher K

    2014-01-01

    The ideal marine antifouling (AF)/fouling-release (FR) coating should be non-toxic, while effectively either resisting the attachment of marine organisms (AF) or significantly reducing their strength of attachment (FR). Many recent studies have shown that amphiphilic polymeric materials provide a promising solution to producing such coatings due to their surface dual functionality. In this work, poly(ethylene glycol) (PEG) of different molecular weights (Mw = 350, 550) was coupled to a saturated difunctional alkyl alcohol to generate amphiphilic surfactants (PEG-hydrocarbon-OH). The resulting macromolecules were then used as side chains to covalently modify a pre-synthesized PS8 K-b-P(E/B)25 K-b-PI10 K (SEBI or K3) triblock copolymer, and the final polymers were applied to glass substrata through an established multilayer surface coating technique to prepare fouling resistant coatings. The coated surfaces were characterized with AFM, XPS and NEXAFS, and evaluated in laboratory assays with two important fouling algae, Ulva linza (a green macroalga) and Navicula incerta, a biofilm-forming diatom. The results suggest that these polymer-coated surfaces undergo surface reconstruction upon changing the contact medium (polymer/air vs polymer/water), due to the preferential interfacial aggregation of the PEG segment on the surface in water. The amphiphilic polymer-coated surfaces showed promising results as both AF and FR coatings. The sample with longer PEG chain lengths (Mw = 550 g mol(-1)) exhibited excellent properties against both algae, highlighting the importance of the chemical structures on ultimate biological performance. Besides reporting synthesis and characterization of this new type of amphiphilic surface material, this work also provides insight into the nature of PEG/hydrocarbon amphiphilic coatings, and this understanding may help in the design of future generations of fluorine-free, environmentally friendly AF/FR polymeric coatings.

  14. Marine Careers.

    ERIC Educational Resources Information Center

    Gordon, Bernard L.

    The five papers in this publication on marine careers were selected so that science teachers, guidance councilors, and students could benefit from the experience and knowledge of individuals active in marine science. The areas considered are indicated by the titles: Professional Careers in Marine Science with the Federal Government, Marine Science…

  15. Designing cathodic protection systems for marine structures and vehicles. ASTM special technical publication 1370

    SciTech Connect

    Hack, H.P.

    1999-07-01

    Cathodic protection is an important method of protecting structures and ships from the corrosive effects of seawater. Poor designs can be far more costly to implement than optimal designs, Improper design can cause overprotection, with resulting paint blistering and accelerated corrosion of some alloys, underprotection, with resultant structure corrosion, or stray current corrosion of nearby structures. The first ASTM symposium specifically aimed at cathodic protection in seawater was intended to compile all the criteria and philosophy for designing both sacrificial and impressed current cathodic protection systems for structures and vehicles in seawater. The papers which are included in this STP are significant in that they summarize the major seawater cathodic protection system design philosophies. Papers have been processed separately for inclusion on the database.

  16. Crustal structure of the coastal and marine San Francisco Bay region, California

    USGS Publications Warehouse

    Parsons, Tom

    2002-01-01

    In summary, these studies were carried out in an environment where background information on faults in the San Francisco Bay region was sought. Much of the structural information presented here comes from experiments of a style unlikely to be conducted by the USGS in the near future. Together, the chapters in this volume provide a structural framework for a major part of a complex strike-slip fault system.

  17. Effect of Silicate Grain Shape, Structure, and Location on the Biomass and Community Structure of Colonizing Marine Microbiota

    PubMed Central

    Nickels, Janet S.; Bobbie, Ronald J.; Martz, Robert F.; Smith, Glen A.; White, David C.; Richards, Norman L.

    1981-01-01

    Microbiota colonizing silica grains of the same size and water pore space, but with a different microtopography, showed differences in biomass and community structure after 8 weeks of exposure to running seawater. The absence of surface cracks and crevices resulted in a marked diminution of the total microbial biomass measured as lipid phosphate and total extractable palmitic acid. With increasing smoothness of the sand grain surface, examination of the community structure showed a marked decrease in procaryotes and algal microeucaryotes, with a relative increase in microeucaryotic grazers. A comparison of the colonizing sediment incubated in running seawater or at 32 m on the sea floor with a sediment core showed a decreased bacterial biomass with a different community structure and a decreased total microeucaryotic population of both grazers and algae. The quantitative differences in microbial biomass and community structure between the microcosms and the actual benthic population in the core were determined. Images PMID:16345778

  18. Disentangling the impacts of heat wave magnitude, duration and timing on the structure and diversity of sessile marine assemblages.

    PubMed

    Smale, Dan A; Yunnie, Anna L E; Vance, Thomas; Widdicombe, Stephen

    2015-01-01

    Extreme climatic events, including heat waves (HWs) and severe storms, influence the structure of marine and terrestrial ecosystems. Despite growing consensus that anthropogenic climate change will increase the frequency, duration and magnitude of extreme events, current understanding of their impact on communities and ecosystems is limited. Here, we used sessile invertebrates on settlement panels as model assemblages to examine the influence of HW magnitude, duration and timing on marine biodiversity patterns. Settlement panels were deployed in a marina in southwest UK for ≥5 weeks, to allow sufficient time for colonisation and development of sessile fauna, before being subjected to simulated HWs in a mesocosm facility. Replicate panel assemblages were held at ambient sea temperature (∼17 °C), or +3 °C or +5 °C for a period of 1 or 2 weeks, before being returned to the marina for a recovery phase of 2-3 weeks. The 10-week experiment was repeated 3 times, staggered throughout summer, to examine the influence of HW timing on community impacts. Contrary to our expectations, the warming events had no clear, consistent impacts on the abundance of species or the structure of sessile assemblages. With the exception of 1 high-magnitude long-duration HW event, warming did not alter not assemblage structure, favour non-native species, nor lead to changes in richness, abundance or biomass of sessile faunal assemblages. The observed lack of effect may have been caused by a combination of (1) the use of relatively low magnitude, realistic heat wave treatments compared to previous studies (2), the greater resilience of mature adult sessile fauna compared to recruits and juveniles, and (3) the high thermal tolerance of the model organisms (i.e., temperate fouling species, principally bryozoans and ascidians). Our study demonstrates the importance of using realistic treatments when manipulating climate change variables, and also suggests that biogeographical context may

  19. Disentangling the impacts of heat wave magnitude, duration and timing on the structure and diversity of sessile marine assemblages.

    PubMed

    Smale, Dan A; Yunnie, Anna L E; Vance, Thomas; Widdicombe, Stephen

    2015-01-01

    Extreme climatic events, including heat waves (HWs) and severe storms, influence the structure of marine and terrestrial ecosystems. Despite growing consensus that anthropogenic climate change will increase the frequency, duration and magnitude of extreme events, current understanding of their impact on communities and ecosystems is limited. Here, we used sessile invertebrates on settlement panels as model assemblages to examine the influence of HW magnitude, duration and timing on marine biodiversity patterns. Settlement panels were deployed in a marina in southwest UK for ≥5 weeks, to allow sufficient time for colonisation and development of sessile fauna, before being subjected to simulated HWs in a mesocosm facility. Replicate panel assemblages were held at ambient sea temperature (∼17 °C), or +3 °C or +5 °C for a period of 1 or 2 weeks, before being returned to the marina for a recovery phase of 2-3 weeks. The 10-week experiment was repeated 3 times, staggered throughout summer, to examine the influence of HW timing on community impacts. Contrary to our expectations, the warming events had no clear, consistent impacts on the abundance of species or the structure of sessile assemblages. With the exception of 1 high-magnitude long-duration HW event, warming did not alter not assemblage structure, favour non-native species, nor lead to changes in richness, abundance or biomass of sessile faunal assemblages. The observed lack of effect may have been caused by a combination of (1) the use of relatively low magnitude, realistic heat wave treatments compared to previous studies (2), the greater resilience of mature adult sessile fauna compared to recruits and juveniles, and (3) the high thermal tolerance of the model organisms (i.e., temperate fouling species, principally bryozoans and ascidians). Our study demonstrates the importance of using realistic treatments when manipulating climate change variables, and also suggests that biogeographical context may

  20. Disentangling the impacts of heat wave magnitude, duration and timing on the structure and diversity of sessile marine assemblages

    PubMed Central

    Yunnie, Anna L.E.; Vance, Thomas; Widdicombe, Stephen

    2015-01-01

    Extreme climatic events, including heat waves (HWs) and severe storms, influence the structure of marine and terrestrial ecosystems. Despite growing consensus that anthropogenic climate change will increase the frequency, duration and magnitude of extreme events, current understanding of their impact on communities and ecosystems is limited. Here, we used sessile invertebrates on settlement panels as model assemblages to examine the influence of HW magnitude, duration and timing on marine biodiversity patterns. Settlement panels were deployed in a marina in southwest UK for ≥5 weeks, to allow sufficient time for colonisation and development of sessile fauna, before being subjected to simulated HWs in a mesocosm facility. Replicate panel assemblages were held at ambient sea temperature (∼17 °C), or +3 °C or +5 °C for a period of 1 or 2 weeks, before being returned to the marina for a recovery phase of 2–3 weeks. The 10-week experiment was repeated 3 times, staggered throughout summer, to examine the influence of HW timing on community impacts. Contrary to our expectations, the warming events had no clear, consistent impacts on the abundance of species or the structure of sessile assemblages. With the exception of 1 high-magnitude long-duration HW event, warming did not alter not assemblage structure, favour non-native species, nor lead to changes in richness, abundance or biomass of sessile faunal assemblages. The observed lack of effect may have been caused by a combination of (1) the use of relatively low magnitude, realistic heat wave treatments compared to previous studies (2), the greater resilience of mature adult sessile fauna compared to recruits and juveniles, and (3) the high thermal tolerance of the model organisms (i.e., temperate fouling species, principally bryozoans and ascidians). Our study demonstrates the importance of using realistic treatments when manipulating climate change variables, and also suggests that biogeographical context may

  1. Finding the relevant scale: clonality and genetic structure in a marine invertebrate (Crambe crambe, Porifera).

    PubMed

    Calderón, Isabel; Ortega, Natalia; Duran, Sandra; Becerro, Mikel; Pascual, Marta; Turon, Xavier

    2007-05-01

    Important changes in genetic relatedness may occur at extremely small scales in benthic invertebrates, providing key information about structuring processes in populations of these organisms. We performed a small-scale study of the population structure of the sponge Crambe crambe, in which 177 individuals from the same rocky wall (interindividual distances from 0 to 7 m) were genotyped using six microsatellite markers. 101 sponges had unique genotypes and the remaining 76 individuals formed 24 groups of sponges sharing genotypes (clones). Mean intraclone distances were found to be c. 20 cm. Spatial autocorrelation analyses showed a drastic decrease in genetic relatedness over the first 100 cm of distance. If the contribution of clonality to this pattern was eliminated, the trend was attenuated, but remained a marked one and was still significant within the first distance classes (30-40 cm). Estimated mean dispersal distances per generation were c. 35 cm, and neighbourhood sizes were estimated at c. 33 sponges. Genetic similarities with sponges of the same locality, or from other Mediterranean localities, were within the same range as those found in sponges 2-7 m apart. It is concluded that asexual reproduction plays an important role in structuring populations in this species. However, over and above the effects of clonality, a strong fine-scale genetic structure was present at distances in the range of tens of centimetres, probably as a result of short dispersal of larvae. This fine-scale genetic structure may be common in invertebrates with lecitotrophic larvae.

  2. A legacy of contrasting spatial genetic structure on either side of the Atlantic–Mediterranean transition zone in a marine protist

    PubMed Central

    Lowe, Chris D.; Martin, Laura E.; Montagnes, David J. S.; Watts, Phillip C.

    2012-01-01

    The mechanisms that underpin the varied spatial genetic structures exhibited by free-living marine microorganisms remain controversial, with most studies emphasizing a high dispersal capability that should redistribute genetic diversity in contrast to most macroorganisms whose populations often retain a genetic signature of demographic response to historic climate fluctuations. We quantified the European phylogeographic structure of the marine flagellate Oxyrrhis marina and found a marked difference in spatial genetic structure, population demography, and genetic diversity between the northwest Atlantic and Mediterranean Sea that reflects the persistent separation of these regions as well as context-dependent population responses to contrasting environments. We found similar geographic variation in the level of genetic diversity in the sister species Oxyrrhis maritima. Because the capacity for wide dispersal is not always realized, historic genetic footprints of range expansion and contraction persist in contemporary populations of marine microbes, as they do in larger species. Indeed, the well-described genetic effects of climatic variation on macroorganisms provide clear, testable hypotheses about the processes that drive genetic divergence in marine microbes and thus about the response to future environmental change. PMID:23213247

  3. A legacy of contrasting spatial genetic structure on either side of the Atlantic-Mediterranean transition zone in a marine protist.

    PubMed

    Lowe, Chris D; Martin, Laura E; Montagnes, David J S; Watts, Phillip C

    2012-12-18

    The mechanisms that underpin the varied spatial genetic structures exhibited by free-living marine microorganisms remain controversial, with most studies emphasizing a high dispersal capability that should redistribute genetic diversity in contrast to most macroorganisms whose populations often retain a genetic signature of demographic response to historic climate fluctuations. We quantified the European phylogeographic structure of the marine flagellate Oxyrrhis marina and found a marked difference in spatial genetic structure, population demography, and genetic diversity between the northwest Atlantic and Mediterranean Sea that reflects the persistent separation of these regions as well as context-dependent population responses to contrasting environments. We found similar geographic variation in the level of genetic diversity in the sister species Oxyrrhis maritima. Because the capacity for wide dispersal is not always realized, historic genetic footprints of range expansion and contraction persist in contemporary populations of marine microbes, as they do in larger species. Indeed, the well-described genetic effects of climatic variation on macroorganisms provide clear, testable hypotheses about the processes that drive genetic divergence in marine microbes and thus about the response to future environmental change.

  4. Role of Huge Geometric Circular Structures in the Reproduction of a Marine Pufferfish

    PubMed Central

    Kawase, Hiroshi; Okata, Yoji; Ito, Kimiaki

    2013-01-01

    We report that male pufferfishes (Torquigener sp., Tetraodontidae) constructed large geometric circular structures on the seabed that played an important role in female mate choice. Males dug valleys at various angles in a radial direction, constructing nests surrounded by radially aligned peaks and valleys. Furthermore, they created irregular patterns in the nest comprising fine sand particles. The circular structure not only influences female mate choice but also functions to gather fine sand particles in nests, which are important in female mate choice. Strangely enough, the males never reuse the nest, always constructing a new circular structure at the huge cost of construction. This is because the valleys may not contain sufficient fine sand particles for multiple reproductive cycles. PMID:23811799

  5. Analysis of quasi-periodic pore-network structure of centric marine diatom frustules

    NASA Astrophysics Data System (ADS)

    Cohoon, Gregory A.; Alvarez, Christine E.; Meyers, Keith; Deheyn, Dimitri D.; Hildebrand, Mark; Kieu, Khanh; Norwood, Robert A.

    2015-03-01

    Diatoms are a common type of phytoplankton characterized by their silica exoskeleton known as a frustule. The diatom frustule is composed of two valves and a series of connecting girdle bands. Each diatom species has a unique frustule shape and valves in particular species display an intricate pattern of pores resembling a photonic crystal structure. We used several numerical techniques to analyze the periodic and quasi-periodic valve pore-network structure in diatoms of the Coscinodiscophyceae order. We quantitatively identify defect locations and pore spacing in the valve and use this information to better understand the optical and biological properties of the diatom.

  6. Artificial breakwaters as garbage bins: Structural complexity enhances anthropogenic litter accumulation in marine intertidal habitats.

    PubMed

    Aguilera, Moisés A; Broitman, Bernardo R; Thiel, Martin

    2016-07-01

    Coastal urban infrastructures are proliferating across the world, but knowledge about their emergent impacts is still limited. Here, we provide evidence that urban artificial reefs have a high potential to accumulate the diverse forms of litter originating from anthropogenic activities around cities. We test the hypothesis that the structural complexity of urban breakwaters, when compared with adjacent natural rocky intertidal habitats, is a driver of anthropogenic litter accumulation. We determined litter abundances at seven sites (cities) and estimated the structural complexity in both urban breakwaters and adjacent natural habitats from northern to central Chile, spanning a latitudinal gradient of ∼15° (18°S to 33°S). Anthropogenic litter density was significantly higher in coastal breakwaters when compared to natural habitats (∼15.1 items m(-2) on artificial reefs versus 7.4 items m(-2) in natural habitats) at all study sites, a pattern that was temporally persistent. Different litter categories were more abundant on the artificial reefs than in natural habitats, with local human population density and breakwater extension contributing to increase the probabilities of litter occurrence by ∼10%. In addition, structural complexity was about two-fold higher on artificial reefs, with anthropogenic litter density being highest at intermediate levels of structural complexity. Therefore, the spatial structure characteristic of artificial reefs seems to enhance anthropogenic litter accumulation, also leading to higher residence time and degradation potential. Our study highlights the interaction between coastal urban habitat modification by establishment of artificial reefs, and pollution. This emergent phenomenon is an important issue to be considered in future management plans and the engineering of coastal ecosystems. PMID:27149151

  7. Artificial breakwaters as garbage bins: Structural complexity enhances anthropogenic litter accumulation in marine intertidal habitats.

    PubMed

    Aguilera, Moisés A; Broitman, Bernardo R; Thiel, Martin

    2016-07-01

    Coastal urban infrastructures are proliferating across the world, but knowledge about their emergent impacts is still limited. Here, we provide evidence that urban artificial reefs have a high potential to accumulate the diverse forms of litter originating from anthropogenic activities around cities. We test the hypothesis that the structural complexity of urban breakwaters, when compared with adjacent natural rocky intertidal habitats, is a driver of anthropogenic litter accumulation. We determined litter abundances at seven sites (cities) and estimated the structural complexity in both urban breakwaters and adjacent natural habitats from northern to central Chile, spanning a latitudinal gradient of ∼15° (18°S to 33°S). Anthropogenic litter density was significantly higher in coastal breakwaters when compared to natural habitats (∼15.1 items m(-2) on artificial reefs versus 7.4 items m(-2) in natural habitats) at all study sites, a pattern that was temporally persistent. Different litter categories were more abundant on the artificial reefs than in natural habitats, with local human population density and breakwater extension contributing to increase the probabilities of litter occurrence by ∼10%. In addition, structural complexity was about two-fold higher on artificial reefs, with anthropogenic litter density being highest at intermediate levels of structural complexity. Therefore, the spatial structure characteristic of artificial reefs seems to enhance anthropogenic litter accumulation, also leading to higher residence time and degradation potential. Our study highlights the interaction between coastal urban habitat modification by establishment of artificial reefs, and pollution. This emergent phenomenon is an important issue to be considered in future management plans and the engineering of coastal ecosystems.

  8. Crystal structure analysis of C-phycoerythrin from marine cyanobacterium Phormidium sp. A09DM.

    PubMed

    Kumar, Vinay; Sonani, Ravi R; Sharma, Mahima; Gupta, Gagan D; Madamwar, Datta

    2016-07-01

    The role of unique sequence features of C-phycoerythrin, isolated from Phormidium sp. A09DM, has been investigated by crystallographic studies. Two conserved indels (i.e. inserts or deletions) are found in the β-subunit of Phormidium phycoerythrin that are distinctive characteristics of large number of cyanobacterial sequences. The identified signatures are a two-residue deletion from position 21 and a nine-residue insertion at position 146. Crystals of Phormidium phycoerythrin were obtained at pH values of 5 and 8.5, and structures have been resolved to high precision at 1.95 and 2.1 Å resolution, respectively. In both the structures, heterodimers of α- and β- subunits assemble as hexamers. The 7-residue insertion at position 146 significantly reduces solvent exposure of π-conjugated A-C rings of a phycoerythrobilin (PEB) chromophore, and can influence energy absorption and energy transfer characteristics. The structural analyses (with 12-fold redundancy) suggest that protein micro-environment alone dictates the conformation of bound chromophores. The low- and high-energy absorbing chromophores are identified based on A-B ring coplanarity. The spatial distribution of these is found to be similar to that observed in R-phycoerythrin, suggesting the direction of energy transfer from outer-surface of hexamer to inner-hollow cavity in the Phormidium protein. The crystal structures also reveal that a commonly observed Hydrogen-bonding network in phycobiliproteins, involving chromophore bound to α-subunit and amino acid at position 73 of β-subunit, may not be essential for structural and functional integrity of C-phycoerythrin orthologs. In solution, the protein displays slight red shift and decrease in fluorescence emission at acidic pH. The mechanism for which may be static and correlates with the proximity of +ve electric field of Arg148 to the C-ring of a PEB chromophore. PMID:27068646

  9. A new taxonomy for distributed computer systems based upon operating system structure

    NASA Technical Reports Server (NTRS)

    Foudriat, E. C.

    1985-01-01

    Characteristics of the resource structure found in the operating system are considered as a mechanism for classifying distributed computer systems. Since the operating system resources, themselves, are too diversified to provide a consistent classification, the structure upon which resources are built and shared are examined. The location and control character of this indivisibility provides the taxonomy for separating uniprocessors, computer networks, network computers (fully distributed processing systems or decentralized computers) and algorithm and/or data control multiprocessors. The taxonomy is important because it divides machines into a classification that is relevant or important to the client and not the hardware architect. It also defines the character of the kernel O/S structure needed for future computer systems. What constitutes an operating system for a fully distributed processor is discussed in detail.

  10. A new global operator for two-particle delta functions. [hyperfine structure of muonic helium

    NASA Technical Reports Server (NTRS)

    Drachman, R. J.

    1981-01-01

    A new type of global operator to be used in evaluating matrix elements of two-particle delta functions is introduced. It is based, like the Trivedi one-particle operator, on the Poisson equation and is easier to apply than the method of Hiller, Sucher and Feinberg. After a test in the helium isoelectronic sequence, the new method is applied successfully to the interesting problem of hyperfine structure in muonic helium.

  11. Marine medicinal glycomics

    PubMed Central

    Pomin, Vitor H.

    2014-01-01

    Glycomics is an international initiative aimed to understand the structure and function of the glycans from a given type of cell, tissue, organism, kingdom or even environment, as found under certain conditions. Glycomics is one of the latest areas of intense biological research. Glycans of marine sources are unique in terms of structure and function. They differ considerably from those of terrestrial origin. This review discusses the most known marine glycans of potential therapeutic properties. They are chitin, chitosan, and sulfated polysaccharides named glycosaminoglycans, sulfated fucans, and sulfated galactans. Their medical actions are very broad. When certain structural requirements are found, these glycans can exhibit beneficial effects in inflammation, coagulation, thrombosis, cancer growth/metastasis, and vascular biology. Both structure and therapeutic mechanisms of action of these marine glycans are discussed here in straight context with the current glycomic age through a project suggestively named marine medicinal glycomics. PMID:24524028

  12. Marine Natural Products Revisited.

    ERIC Educational Resources Information Center

    Chang, Clifford W. J.

    1978-01-01

    Reports the chemistry of saxitoxin, a paralytic shellfish poison, and other toxins, including the structure of aplysiatoxins. Discusses the chemical signals and defense agents used in intra- and inter- species communication; anticancer agents; and organometallics in the marine environment. (MA)

  13. The effect of dynamic operating conditions on nano-particle emissions from a light-duty diesel engine applicable to prime and auxiliary machines on marine vessels

    NASA Astrophysics Data System (ADS)

    Lee, Hyungmin; Jeong, Yeonhwan

    2012-12-01

    This study presents the nano-sized particle emission characteristics from a small turbocharged common rail diesel engine applicable to prime and auxiliary machines on marine vessels. The experiments were conducted under dynamic engine operating conditions, such as steady-state, cold start, and transient conditions. The particle number and size distributions were analyzed with a high resolution PM analyzer. The diesel oxidation catalyst (DOC) had an insignificant effect on the reduction in particle number, but particle number emissions were drastically reduced by 3 to 4 orders of magnitude downstream of the diesel particulate filter (DPF) at various steady conditions. Under high speed and load conditions, the particle filtering efficiency was decreased by the partial combustion of trapped particles inside the DPF because of the high exhaust temperature caused by the increased particle number concentration. Retarded fuel injection timing and higher EGR rates led to increased particle number emissions. As the temperature inside the DPF increased from 25 °C to 300 °C, the peak particle number level was reduced by 70% compared to cold start conditions. High levels of nucleation mode particle generation were found in the deceleration phases during the transient tests.

  14. Functional traits explain phytoplankton community structure and seasonal dynamics in a marine ecosystem.

    PubMed

    Edwards, Kyle F; Litchman, Elena; Klausmeier, Christopher A

    2013-01-01

    A fundamental yet elusive goal of ecology is to predict the structure of communities from the environmental conditions they experience. Trait-based approaches to terrestrial plant communities have shown that functional traits can help reveal the mechanisms underlying community assembly, but such approaches have not been tested on the microbes that dominate ecosystem processes in the ocean. Here, we test whether functional traits can explain community responses to seasonal environmental fluctuation, using a time series of the phytoplankton of the English Channel. We show that interspecific variation in response to major limiting resources, light and nitrate, can be well-predicted by lab-measured traits characterising light utilisation, nitrate utilisation and maximum growth rate. As these relationships were predicted a priori, using independently measured traits, our results show that functional traits provide a strong mechanistic foundation for understanding the structure and dynamics of ecological communities.

  15. Structure and synthesis of a unique isonitrile lipid isolated from the marine mollusk Actinocyclus papillatus.

    PubMed

    Manzo, Emiliano; Carbone, Marianna; Mollo, Ernesto; Irace, Carlo; Di Pascale, Antonio; Li, Yan; Ciavatta, Maria Letizia; Cimino, Guido; Guo, Yue-Wei; Gavagnin, Margherita

    2011-04-15

    The first chemical study of an Actinocyclidae nudibranch, Actinocyclus papillatus, resulted in the isolation of (-)-actisonitrile (1), a lipid based on a 1,3-propanediol ether skeleton. The structure was established by spectroscopic methods, whereas the absolute configuration of the chiral center was determined by comparing the optical properties of natural actisonitrile with those of (+)- and (-)-synthetic enantiomers, opportunely prepared. Both (-)- and (+)-actisonitrile were tested in preliminary in vitro cytotoxicity bioassays on tumor and nontumor mammalian cells. PMID:21405058

  16. Geophysical survey of the Målingen structure, a proposed marine-target impact crater.

    NASA Astrophysics Data System (ADS)

    Melero-Asensio, I.; Ormö, J.; Sturkell, E.

    2013-09-01

    Målingen is a 700m wide circular structure situated about 15km to SW of Lockne impact crater (central Sweden). Its circular shape and exposed sedimentary breccias resembling the resurge deposits at Lockne of the same age, strongly points towards a formation in relation to Lockne. The existence of shocked quartz grains in the lower parts of the about 149m long MAL-1 drill core retrieved from the center of the structure provides evidence for an impact origin[1]. The core showed a breccia-and sediment-filled depression of about 115 m depth. The basement in the Lockne/Målingen area is mainly constituted by Precambrian granitoids (Revsund Granite and a slightly foliated rock that we refer to as "older granite"), but sporadic occurrences of mafic rocks are also of interest for this study. The basement is covered by about 30m of Cambrian dark shale and about 50m of Ordovician limestones. The aim of this study is to develop a mutually constrained gravity and magnetic model to determine the dimensions and shape of the Målingen structure and evaluate its impact origin.

  17. The deep structure of the Western Pyrenees: constraints from tomographic imaging, field and marine geological observations

    NASA Astrophysics Data System (ADS)

    Tugend, Julie; Manatschal, Gianreto; Chevrot, Sébastien; Mohn, Geoffroy

    2015-04-01

    Knowledge of magma-poor rifted margin architecture has significantly evolved over the past decades. Refraction seismic data combined with drill-hole observations unravelled the velocity structure and lithological assemblages of the most distal part of continental rifted margins. Present-day models of continental rifted margins include the occurrence of hyperextended domains consisting in extremely thinned continental crust and/or exhumed subcontinental mantle as described at many rifted margins. Studies in mountain belts revealed that remnants of hyperextended domains could also be identified in internal parts of collisional orogens. Integrating recent developments in the understanding of rifted margins in the study of mountain building processes, in particular the importance of the reactivation of inherited rift structures is therefore essential and may result in alternative interpretations of the lithospheric scale structure of collisional orogens. In this contribution, we focus on the western part of the Pyrenean orogen that resulted from the inversion of a complex Late Jurassic to Mid Cretaceous rift system. The transition from preserved oceanic and rift domains to the west (in the offshore Bay of Biscay) to their complete inversion in the east provides simultaneous access to seismically imaged and exposed parts of a hyperextended rift system. Based on a multi-scale dataset that combines sub-surface data (field and drill-hole observations) with tomographic imaging (PYROPE experiment) and integrating new concepts derived from the study of present-day rifted margins, we investigate the lithospheric-scale architecture of the Western Pyrenees. Our results suggest that the imaged north-dipping crustal root may correspond to the former exhumed mantle and hyperthinned domains that have been subducted/underthrust at the onset of convergence. This interpretation contrasts with the classical assumption that the crustal root is made of lower crustal rocks. This

  18. Crystal structure of the eukaryotic light-driven proton-pumping rhodopsin, Acetabularia rhodopsin II, from marine alga.

    PubMed

    Wada, Takashi; Shimono, Kazumi; Kikukawa, Takashi; Hato, Masakatsu; Shinya, Naoko; Kim, So Young; Kimura-Someya, Tomomi; Shirouzu, Mikako; Tamogami, Jun; Miyauchi, Seiji; Jung, Kwang-Hwan; Kamo, Naoki; Yokoyama, Shigeyuki

    2011-09-01

    Acetabularia rhodopsin (AR) is a rhodopsin from the marine plant Acetabularia acetabulum. The opsin-encoding gene from A. acetabulum, ARII, was cloned and found to be novel but homologous to that reported previously. ARII is a light-driven proton pump, as demonstrated by the existence of a photo-induced current through Xenopus oocytes expressing ARII. The photochemical reaction of ARII prepared by cell-free protein synthesis was similar to that of bacteriorhodopsin (BR), except for the lack of light-dark adaptation and the different proton release and uptake sequence. The crystal structure determined at 3.2 Å resolution is the first structure of a eukaryotic member of the microbial rhodopsin family. The structure of ARII is similar to that of BR. From the cytoplasmic side to the extracellular side of the proton transfer pathway in ARII, Asp92, a Schiff base, Asp207, Asp81, Arg78, Glu199, and Ser189 are arranged in positions similar to those of the corresponding residues directly involved in proton transfer by BR. The side-chain carboxyl group of Asp92 appears to interact with the sulfhydryl group of Cys218, which is unique to ARII and corresponds to Leu223 of BR and to Asp217 of Anabaena sensory rhodopsin. The orientation of the Arg78 side chain is opposite to the corresponding Arg82 of BR. The putative absence of water molecules around Glu199 and Arg78 may disrupt the formation of the low-barrier hydrogen bond at Glu199, resulting in the "late proton release".

  19. Interactive effects of pesticide exposure and habitat structure on behavior and predation of a marine larval fish.

    PubMed

    Renick, Violet Compton; Anderson, Todd W; Morgan, Steven G; Cherr, Gary N

    2015-03-01

    Coastal development has generated multiple stressors in marine and estuarine ecosystems, including habitat degradation and pollutant exposure, but the effects of these stressors on the ecology of fishes remain poorly understood. We studied the separate and combined effects of an acute 4 h sublethal exposure of the pyrethroid pesticide esfenvalerate and structural habitat complexity on behavior and predation risk of larval topsmelt (Atherinops affinis). Larvae were exposed to four nominal esfenvalerate concentrations (control, 0.12, 0.59, 1.18 μg/L), before placement into 12 L mesocosms with a three-spine stickleback (Gasterosteus aculeatus) predator. Five treatments of artificial eelgrass included a (1) uniform and (2) patchy distribution of eelgrass at a low density (500 shoots per m(2)), a (3) uniform and (4) patchy distribution of eelgrass at a high density (1,000 shoots per m(2)), and (5) the absence of eelgrass. The capture success of predators and aggregative behavior of prey were observed in each mesocosm for 10 min of each trial, and mortality of prey was recorded after 60 min. Exposure to esfenvalerate increased the proportion of larvae with swimming abnormalities. Surprisingly, prey mortality did not increase linearly with pesticide exposure but increased with habitat structure (density of eelgrass), which may have been a consequence of compensating predator behavior. The degree of prey aggregation decreased with both habitat structure and pesticide exposure, suggesting that anti-predator behaviors by prey may have been hampered by the interactive effects of both of these factors.

  20. Autonomous Structural Health MONITORING—PART II: Vibration-Based In-Operation Damage Assessment

    NASA Astrophysics Data System (ADS)

    Parloo, E.; Verboven, P.; Guillaume, P.; van Overmeire, M.

    2002-07-01

    Monitoring structural health of civil and industrial structures, based on in-operation modal testing, has become an important issue. Recently, a sensitivity-based damage assessment technique was presented and successfully tested on both civil and more academic structures. As shown in literature, these sensitivities can be experimentally calculated (without the use of a finite element model) on a basis of the estimated natural frequencies and mass-normalised mode shapes of the test structure in its reference condition. Since a driving point measurement is required for an easy scaling (e.g. mass-normalisation) of the mode shapes, the applicability of the method was restricted to forced-vibration tests only. In this contribution, the applicability of the sensitivity-based method is extended to the domain of operational modal analysis (output-only measurements). In a first step, a new method is used for the correct re-scaling of operational mode shape estimates that neither requires forced vibration testing nor finite element modelling. Secondly, two innovative sensitivity-based in-operation damage assessment schemes are introduced. Both methods were experimentally tested on an academic frame structure as well as a slat track of an Airbus A320 commercial aeroplane.

  1. Method for Estimating Operational Loads on Aerospace Structures Using Span-Wisely Distributed Surface Strains

    NASA Technical Reports Server (NTRS)

    Ko, William L.; Fleischer, Van Tran

    2013-01-01

    This report presents a new method for estimating operational loads (bending moments, shear loads, and torques) acting on slender aerospace structures using distributed surface strains (unidirectional strains). The surface strain-sensing stations are to be evenly distributed along each span-wise strain-sensing line. A depth-wise cross section of the structure along each strain-sensing line can then be considered as an imaginary embedded beam. The embedded beam was first evenly divided into multiple small domains with domain junctures matching the strain-sensing stations. The new method is comprised of two steps. The first step is to determine the structure stiffness (bending or torsion) using surface strains obtained from a simple bending (or torsion) loading case, for which the applied bending moment (or torque) is known. The second step is to use the strain-determined structural stiffness (bending or torsion), and a new set of surface strains induced by any other loading case to calculate the associated operational loads (bending moments, shear loads, or torques). Performance of the new method for estimating operational loads was studied in light of finite-element analyses of several example structures subjected to different loading conditions. The new method for estimating operational loads was found to be fairly accurate, and is very promising for applications to the flight load monitoring of flying vehicles with slender wings.

  2. Novel circular single-stranded DNA viruses identified in marine invertebrates reveal high sequence diversity and consistent predicted intrinsic disorder patterns within putative structural proteins

    PubMed Central

    Rosario, Karyna; Schenck, Ryan O.; Harbeitner, Rachel C.; Lawler, Stephanie N.; Breitbart, Mya

    2015-01-01

    Viral metagenomics has recently revealed the ubiquitous and diverse nature of single-stranded DNA (ssDNA) viruses that encode a conserved replication initiator protein (Rep) in the marine environment. Although eukaryotic circular Rep-encoding ssDNA (CRESS-DNA) viruses were originally thought to only infect plants and vertebrates, recent studies have identified these viruses in a number of invertebrates. To further explore CRESS-DNA viruses in the marine environment, this study surveyed CRESS-DNA viruses in various marine invertebrate species. A total of 27 novel CRESS-DNA genomes, with Reps that share less than 60.1% identity with previously reported viruses, were recovered from 21 invertebrate species, mainly crustaceans. Phylogenetic analysis based on the Rep revealed a novel clade of CRESS-DNA viruses that included approximately one third of the marine invertebrate associated viruses identified here and whose members may represent a novel family. Investigation of putative capsid proteins (Cap) encoded within the eukaryotic CRESS-DNA viral genomes from this study and those in GenBank demonstrated conserved patterns of predicted intrinsically disordered regions (IDRs), which can be used to complement similarity-based searches to identify divergent structural proteins within novel genomes. Overall, this study expands our knowledge of CRESS-DNA viruses associated with invertebrates and explores a new tool to evaluate divergent structural proteins encoded by these viruses. PMID:26217327

  3. Extended Aging Theories for Predictions of Safe Operational Life of Critical Airborne Structural Components

    NASA Technical Reports Server (NTRS)

    Ko, William L.; Chen, Tony

    2006-01-01

    The previously developed Ko closed-form aging theory has been reformulated into a more compact mathematical form for easier application. A new equivalent loading theory and empirical loading theories have also been developed and incorporated into the revised Ko aging theory for the prediction of a safe operational life of airborne failure-critical structural components. The new set of aging and loading theories were applied to predict the safe number of flights for the B-52B aircraft to carry a launch vehicle, the structural life of critical components consumed by load excursion to proof load value, and the ground-sitting life of B-52B pylon failure-critical structural components. A special life prediction method was developed for the preflight predictions of operational life of failure-critical structural components of the B-52H pylon system, for which no flight data are available.

  4. Microarray-Based Characterization of Microbial Community Functional Structure and Heterogeneity in Marine Sediments from the Gulf of Mexico ▿ †

    PubMed Central

    Wu, Liyou; Kellogg, Laurie; Devol, Allan H.; Tiedje, James M.; Zhou, Jizhong

    2008-01-01

    Marine sediments of coastal margins are important sites of carbon sequestration and nitrogen cycling. To determine the metabolic potential and structure of marine sediment microbial communities, two cores were collected each from the two stations (GMT at a depth of 200 m and GMS at 800 m) in the Gulf of Mexico, and six subsamples representing different depths were analyzed from each of these two cores using functional gene arrays containing ∼2,000 probes targeting genes involved in carbon fixation; organic carbon degradation; contaminant degradation; metal resistance; and nitrogen, sulfur, and phosphorous cycling. The geochemistry was highly variable for the sediments based on both site and depth. A total of 930 (47.1%) probes belonging to various functional gene categories showed significant hybridization with at least 1 of the 12 samples. The overall functional gene diversity of the samples from shallow depths was in general lower than those from deep depths at both stations. Also high microbial heterogeneity existed in these marine sediments. In general, the microbial community structure was more similar when the samples were spatially closer. The number of unique genes at GMT increased with depth, from 1.7% at 0.75 cm to 18.9% at 25 cm. The same trend occurred at GMS, from 1.2% at 0.25 cm to 15.2% at 16 cm. In addition, a broad diversity of geochemically important metabolic functional genes related to carbon degradation, nitrification, denitrification, nitrogen fixation, sulfur reduction, phosphorus utilization, contaminant degradation, and metal resistance were observed, implying that marine sediments could play important roles in biogeochemical cycling of carbon, nitrogen, phosphorus, sulfate, and various metals. Finally, the Mantel test revealed significant positive correlations between various specific functional genes and functional processes, and canonical correspondence analysis suggested that sediment depth, PO43−, NH4+, Mn(II), porosity, and Si

  5. Body size-based trophic structure of a deep marine ecosystem.

    PubMed

    Romero-Romero, Sonia; Molina-Ramírez, Axayacatl; Hofer, Juan; Luis Acuña, José

    2016-01-01

    Nitrogen stable isotope ratios (δ15N) and body size were used to describe the size-based trophic structure of a deep-sea ecosystem, the Avilés submarine Canyon (Cantabrian Sea, Southern Bay of Biscay). We analyzed δ15N of specimens collected on a seasonal basis (March 2012, October 2012, and May 2013), from a variety of zones (benthic, pelagic), taxa (from zooplankton through invertebrates and fishes to giant squids and cetaceans), or depths (from surface to 4700 m) that spanned nine orders of magnitude in body mass. Our data reveal a strong linear dependence of trophic level on body size when data were considered either individually, aggregated into taxonomical categories, or binned into size classes. The three approaches render similar results that were not significantly different and yielded predator:prey body mass ratios (PPMR) of 1156:1, 3792:1 and 2718:1, respectively. Thus, our data represent unequivocal evidence of interspecific, size-based trophic structure of a whole ecosystem based on taxonomic/functional categories. We studied the variability in δ15N not explained by body mass (W) using linear mixed modeling and found that the δ15N vs. log10 W relationship holds for both pelagic and benthic systems, with benthic organisms isotopically enriched relative to pelagic organisms of the same size. However there is a marked seasonal variation potentially related to the recycling state of the system. PMID:27008786

  6. Potential use of offshore marine structures in rebuilding an overfished rockfish species, bocaccio (Sebastes paucispinis)

    USGS Publications Warehouse

    Love, M.S.; Schroeder, D.M.; Lenarz, W.; MacCall, A.; Bull, A.S.; Thorsteinson, L.

    2006-01-01

    Although bocaccio (Sebastes paucispinis) was an economically important rockfish species along the west coast of North America, overfishing has reduced the stock to about 7.4% of its former unfished population. In 2003, using a manned research submersible, we conducted fish surveys around eight oil and gas platforms off southern California as part of an assessment of the potential value of these structures as fish habitat. From these surveys, we estimated that there was a minimum of 430,000 juvenile bocaccio at these eight structures. We determined this number to be about 20% of the average number of juvenile bocaccio that survive annually for the geographic range of the species. When these juveniles become adults, they will contribute about one percent (0.8%) of the additional amount of fish needed to rebuild the Pacific Coast population. By comparison, juvenile bocaccio recruitment to nearshore natural nursery grounds, as determined through regional scuba surveys, was low in the same year. This research demonstrates that a relatively small amount of artificial nursery habitat may be quite valuable in rebuilding an overfished species.

  7. Unexpected fine-scale population structure in a broadcast-spawning Antarctic marine mollusc.

    PubMed

    Hoffman, Joseph I; Clarke, Andy; Clark, Melody S; Fretwell, Peter; Peck, Lloyd S

    2012-01-01

    Several recent empirical studies have challenged the prevailing dogma that broadcast-spawning species exhibit little or no population genetic structure by documenting genetic discontinuities associated with large-scale oceanographic features. However, relatively few studies have explored patterns of genetic differentiation over fine spatial scales. Consequently, we used a hierarchical sampling design to investigate the basis of a weak but significant genetic difference previously reported between Antarctic limpets (Nacella concinna) sampled from Adelaide and Galindez Islands near the base of the Antarctic Peninsula. Three sites within Ryder Bay, Adelaide Island (Rothera Point, Leonie and Anchorage Islands) were each sub-sampled three times, yielding a total of 405 samples that were genotyped at 155 informative Amplified Fragment Length Polymorphisms (AFLPs). Contrary to our initial expectations, limpets from Anchorage Island were found to be subtly, but significantly distinct from those sampled from the other sites. This suggests that local processes may play an important role in generating fine-scale population structure even in species with excellent dispersal capabilities, and highlights the importance of sampling at multiple spatial scales in population genetic surveys.

  8. Unexpected Fine-Scale Population Structure in a Broadcast-Spawning Antarctic Marine Mollusc

    PubMed Central

    Hoffman, Joseph I.; Clarke, Andy; Clark, Melody S.; Fretwell, Peter; Peck, Lloyd S.

    2012-01-01

    Several recent empirical studies have challenged the prevailing dogma that broadcast-spawning species exhibit little or no population genetic structure by documenting genetic discontinuities associated with large-scale oceanographic features. However, relatively few studies have explored patterns of genetic differentiation over fine spatial scales. Consequently, we used a hierarchical sampling design to investigate the basis of a weak but significant genetic difference previously reported between Antarctic limpets (Nacella concinna) sampled from Adelaide and Galindez Islands near the base of the Antarctic Peninsula. Three sites within Ryder Bay, Adelaide Island (Rothera Point, Leonie and Anchorage Islands) were each sub-sampled three times, yielding a total of 405 samples that were genotyped at 155 informative Amplified Fragment Length Polymorphisms (AFLPs). Contrary to our initial expectations, limpets from Anchorage Island were found to be subtly, but significantly distinct from those sampled from the other sites. This suggests that local processes may play an important role in generating fine-scale population structure even in species with excellent dispersal capabilities, and highlights the importance of sampling at multiple spatial scales in population genetic surveys. PMID:22403655

  9. Advances in Chemical and Structural Characterization of Concretion with Implications for Modeling Marine Corrosion

    NASA Astrophysics Data System (ADS)

    Johnson, Donald L.; DeAngelis, Robert J.; Medlin, Dana J.; Carr, James D.; Conlin, David L.

    2014-05-01

    The Weins number model and concretion equivalent corrosion rate methodology were developed as potential minimum-impact, cost-effective techniques to determine corrosion damage on submerged steel structures. To apply the full potential of these technologies, a detailed chemical and structural characterization of the concretion (hard biofouling) that transforms into iron bearing minerals is required. The fractions of existing compounds and the quantitative chemistries are difficult to determine from x-ray diffraction. Environmental scanning electron microscopy was used to present chemical compositions by means of energy-dispersive spectroscopy (EDS). EDS demonstrates the chemical data in mapping format or in point or selected area chemistries. Selected-area EDS data collection at precise locations is presented in terms of atomic percent. The mechanism of formation and distribution of the iron-bearing mineral species at specific locations will be presented. Based on water retention measurements, porosity in terms of void volume varies from 15 v/o to 30 v/o (vol.%). The void path displayed by scanning electron microscopy imaging illustrates the tortuous path by which oxygen migrates in the water phase within the concretion from seaside to metalside.

  10. Examination of the structures of several glycerolipids from marine macroalgae by NMR and GC-MS.

    PubMed

    Logvinov, Stepan; Gerasimenko, Natalia; Esipov, Andrey; Denisenko, Vladimir A

    2015-12-01

    Several classes of glycerolipids were isolated from the total lipids of the algae Saccharina cichorioides, Eualaria fistulosa, Fucus evanescens, Sargassum pallidum, Silvetia babingtonii (Ochrophyta, Phaeophyceae), Tichocarpus crinitus, and Neorhodomela larix (Rhodophyta, Florideophyceae). The structures of these lipids were examined by nuclear magnetic resonance (NMR) spectroscopy, including 1D ((1) H and (13) C) and 2D (COSY, HSQC and HMBC) experiments. All of the investigated algae included common galactolipids and sulfonoglycolipids as the major glycolipids. Minor glycolipids isolated from S. cichorioides, T. crinitus, and N. laris were identified as lyso-galactolipids with a polar group consisted of the galactose. Comparison of the (1) H NMR data of minor nonpolar lipids isolated from the extracts of the brown algae S. pallidum and F. evanescens with the (1) H NMR data of other lipids allowed them to be identified as diacylglycerols. The structures of betaine lipids isolated from brown algae were confirmed by NMR for the first time. The fatty acid compositions of the isolated lipids were determined by gas chromatography-mass spectrometry. PMID:26987002

  11. Marine oil spill contingency planning.

    PubMed

    Qiao, Bing; Chu, Jia-cheng; Zhao, Ping; Yu, Yuan; Li, Yun

    2002-01-01

    According to the practice researching and formulating "The Oil Spill Contingency Plan of South Chinese Sea", this paper analyses and discusses the structure, functions and main contents of marine oil spill contingency planning, programs the organizing and commanding system and emergency response system, and advances the planning and researching method to coordinate comprehensively and to design practically the detailed emergency response steps until to formulate the ease operating programs for the plan implementation(PPI) and the PPI to apply high-techniques supporting emergency administrations and response.

  12. Manganese and iron as structuring parameters of microbial communities in Arctic marine sediments from the Baffin Bay.

    PubMed

    Algora, Camelia; Vasileiadis, Sotirios; Wasmund, Kenneth; Trevisan, Marco; Krüger, Martin; Puglisi, Edoardo; Adrian, Lorenz

    2015-06-01

    The Arctic Baffin Bay between Canada and Greenland is sea ice-covered during the majority of the year, restricting primary production to the summer months. Sediments receive low amounts of mostly terrestrial- and less marine-derived organic matter. To study microbial communities constrained by physicochemical conditions changing with distance from land and ocean depth, we applied high-throughput 16S rRNA gene sequencing and compared sequence diversity with biogeochemical parameters in 40 different sediment samples. Samples originated from seven cores down to 470 cm below seafloor along a shelf-to-basin transect. Bacterial diversity decreased faster with depth in basin than in shelf sediments, suggesting higher organic matter content sustained diversity into greater depths. All samples were dominated by Betaproteobacteria (mostly order Burkholderiales), which were especially abundant in basin sediments with low organic carbon and high Mn and Fe pore water concentrations. Strong statistical correlations between concentrations of reduced Mn and/or Fe and the relative abundances of Betaproteobacteria suggest that this group is involved in metal reduction in Baffin Bay sediments. Dehalococcoidia (phylum Chloroflexi) were abundant in all samples, especially in shelf sediments with high organic content. This study indicates that Mn and/or Fe play important roles structuring microbial communities in Arctic sediments poor in organic matter.

  13. Kärdla (Hiiumaa Island, Estonia)—the buried and well-preserved Ordovician marine impact structure

    NASA Astrophysics Data System (ADS)

    Suuroja, Kalle; Suuroja, Sten; All, Tarmo; Floden, Tom

    The Kärdla marine impact structure (Estonia, 58°58'N, 22°46'E) was formed at 455 Ma (Upper Ordovician), in a shallow epicontinental sea some tens of kilometres from the land and erosion area. The iron-rich projectile about 200 m in diameter approached from the west at an angle of 30-45°. The impactor penetrated about 50-m-thick water layer and the sedimentary cover and exploded in the uppermost part of the crystalline basement. A complex crater, 4 km wide and about 500 m deep, with a central uplift rising 130 m from the crater floor, was formed. The highest point of the rimwall is 110 m above the target level. The rimwall is cut by at least two resurge-excavated gullies. The variable height of the rimwall obviously results from the obliqueness of the impact. Outside the crater an elliptical area was revealed, 12-15 km in diameter, with deformed sedimentary rocks below the target level. The elliptical shape of this area may also be due to the oblique impact. Because the crater and its surroundings were buried directly after the impact, the whole complex of impact-related sediments is preserved there. They are recovered by 160 wells, six of which penetrate the entire complex of impact breccias inside the crater.

  14. Symbiotic archaea in marine sponges show stability and host specificity in community structure and ammonia oxidation functionality.

    PubMed

    Zhang, Fan; Pita, Lucía; Erwin, Patrick M; Abaid, Summara; López-Legentil, Susanna; Hill, Russell T

    2014-12-01

    Archaea associated with marine sponges are active and influence the nitrogen metabolism of sponges. However, we know little about their occurrence, specificity, and persistence. We aimed to elucidate the relative importance of host specificity and biogeographic background in shaping the symbiotic archaeal communities. We investigated these communities in sympatric sponges from the Mediterranean (Ircinia fasciculata and Ircinia oros, sampled in summer and winter) and from the Caribbean (Ircinia strobilina and Mycale laxissima). PCR cloning and sequencing of archaeal 16S rRNA and amoA genes showed that the archaeal community composition and structure were different from that in seawater and varied among sponge species. We found that the communities were dominated by ammonia-oxidizing archaea closely related to Nitrosopumilus. The community in M. laxissima differed from that in Ircinia spp., including the sympatric sponge I. strobilina; yet, geographical clusters within Ircinia spp. were observed. Whereas archaeal phylotypes in Ircinia spp. were persistent and belong to 'sponge-enriched' clusters, archaea in M. laxissima were closely related with those from diverse habitats (i.e. seawater and sediments). For all four sponge species, the expression of the archaeal amoA gene was confirmed. Our results indicate that host-specific processes, such as host ecological strategy and evolutionary history, control the sponge-archaeal communities.

  15. Assessing the structure of non-routine decision processes in Airline Operations Control.

    PubMed

    Richters, Floor; Schraagen, Jan Maarten; Heerkens, Hans

    2016-03-01

    Unfamiliar severe disruptions challenge Airline Operations Control professionals most, as their expertise is stretched to its limits. This study has elicited the structure of Airline Operations Control professionals' decision process during unfamiliar disruptions by mapping three macrocognitive activities on the decision ladder: sensemaking, option evaluation and action planning. The relationship between this structure and decision quality was measured. A simulated task was staged, based on which think-aloud protocols were obtained. Results show that the general decision process structure resembles the structure of experts working under routine conditions, in terms of the general structure of the macrocognitive activities, and the rule-based approach used to identify options and actions. Surprisingly, high quality of decision outcomes was found to relate to the use of rule-based strategies. This implies that successful professionals are capable of dealing with unfamiliar problems by reframing them into familiar ones, rather than to engage in knowledge-based processing. Practitioner Summary: We examined the macrocognitive structure of Airline Operations Control professionals' decision process during a simulated unfamiliar disruption in relation to decision quality. Results suggest that successful professionals are capable of dealing with unfamiliar problems by reframing them into familiar ones, rather than to engage in knowledge-based processing.

  16. Turbulence structure of the marine atmospheric boundary layer observed during the SEMAPHORE experiment

    SciTech Connect

    Durand, P.; Benech, B.; Druilhet, A.; Ferret, B.

    1994-12-31

    The SEMAPHORE experiment was conducted in the Azores region in 1993 and was devoted to mesoscale studies of oceanic and atmospheric circulations, as well as interactions between oceanic and atmospheric boundary layers. From October 4 to November 17, two instrumented aircraft gathered data. One of the major objectives of SEMAPHORE was to study the coupling between the atmospheric and oceanic boundary layers in the vicinity of an oceanic temperature front. This front, associated with the Azores current, was located south of the Santa Maria Island where the aircraft were based. The aim of this paper is to document the turbulent structure of the atmospheric boundary layer, analyzed from aircraft measurements, for two different meteorological situations.

  17. Structure Elucidation and in Vitro Toxicity of New Azaspiracids Isolated from the Marine Dinoflagellate Azadinium poporum

    PubMed Central

    Krock, Bernd; Tillmann, Urban; Potvin, Éric; Jeong, Hae Jin; Drebing, Wolfgang; Kilcoyne, Jane; Al-Jorani, Ahmed; Twiner, Michael J.; Göthel, Qun; Köck, Matthias

    2015-01-01

    Two strains of Azadinium poporum, one from the Korean West coast and the other from the North Sea, were mass cultured for isolation of new azaspiracids. Approximately 0.9 mg of pure AZA-36 (1) and 1.3 mg of pure AZA-37 (2) were isolated from the Korean (870 L) and North Sea (120 L) strains, respectively. The structures were determined to be 3-hydroxy-8-methyl-39-demethyl-azaspiracid-1 (1) and 3-hydroxy-7,8-dihydro-39-demethyl-azaspiracid-1 (2) by 1H- and 13C-NMR. Using the Jurkat T lymphocyte cell toxicity assay, (1) and (2) were found to be 6- and 3-fold less toxic than AZA-1, respectively. PMID:26528990

  18. Marine fragrance chemistry.

    PubMed

    Hügel, Helmut M; Drevermann, Britta; Lingham, Anthony R; Marriott, Philip J

    2008-06-01

    The main marine message in perfumery is projected by Calone 1951 (7-methyl-2H-1,5-benzodioxepin-3(4H)-one). Kraft (Givaudan) and Gaudin (Firmenich) further maximized the marine fragrance molecular membership by extending the carbon chain of the 7-Me group. Our research targeted the polar group of the benzodioxepinone parent compound to investigate how this region of molecular makeup resonates with the dominant marine fragrance of the Calone 1951 structure. The olfactory evaluation of analogues prepared by chemical modification or removal of the CO group resulted in the introduction of aldehydic, sweet and floral-fruity notes with a diluted/diminished potency of the marine odor. To further analyze the olfactory properties of benzodioxepinones containing a diverse range of aromatic ring substituents, a novel synthesis route was developed. We found that a 7-alkyl group in Calone 1951 was essential for the maintenance of the significant marine odor characteristic, and our studies support the concept that the odorant structure occupying the hydrophobic binding pocket adjacent to the aromatic ring-binding site of the olfactory receptor is pivotal in the design and discovery of more potent and characteristic marine fragrances. How the structure of benzodioxepinones connects to marine sea-breeze fragrances is our continuing challenging research focus at the chemistry-biology interface.

  19. Nuclear Technology. Course 29: Civil/Structural Inspection. Module 29-1, Inspection of Construction Operations.

    ERIC Educational Resources Information Center

    Groseclose, Richard

    This first in a series of six modules for a course titled Civil/Structural Inspection describes engineering and construction activities associated with the construction of a nuclear power plant. In addition, the module describes the equipment and materials used and some of the inspection operations which may be performed by the quality…

  20. Selection of optimal threshold to construct recurrence plot for structural operational vibration measurements

    NASA Astrophysics Data System (ADS)

    Yang, Dong; Ren, Wei-Xin; Hu, Yi-Ding; Li, Dan

    2015-08-01

    The structural health monitoring (SHM) involves the sampled operational vibration measurements over time so that the structural features can be extracted accordingly. The recurrence plot (RP) and corresponding recurrence quantification analysis (RQA) have become a useful tool in various fields due to its efficiency. The threshold selection is one of key issues to make sure that the constructed recurrence plot contains enough recurrence points. Different signals have in nature different threshold values. This paper is aiming at presenting an approach to determine the optimal threshold for the operational vibration measurements of civil engineering structures. The surrogate technique and Taguchi loss function are proposed to generate reliable data and to achieve the optimal discrimination power point where the threshold is optimum. The impact of selecting recurrence thresholds on different signals is discussed. It is demonstrated that the proposed method to identify the optimal threshold is applicable to the operational vibration measurements. The proposed method provides a way to find the optimal threshold for the best RP construction of structural vibration measurements under operational conditions.

  1. Informal Numeracy Skills: The Structure and Relations among Numbering, Relations, and Arithmetic Operations in Preschool

    ERIC Educational Resources Information Center

    Purpura, David J.; Lonigan, Christopher J.

    2013-01-01

    Validating the structure of informal numeracy skills is critical to understanding the developmental trajectories of mathematics skills at early ages; however, little research has been devoted to construct evaluation of the Numbering, Relations, and Arithmetic Operations domains. This study was designed to address this knowledge gap by examining…

  2. Transfer of Training in Double Classification Skills Across Operations of Guilford's Structure-of-Intellect Model.

    ERIC Educational Resources Information Center

    Jacobs, Paul I.; White, Margaret N.

    The present study was undertaken to assess whether training that was known to produce transfer within the Cognition of Figural Relations (CFR) domain of Guilford's Structure-of-Intellect model would also produce transfer to other operations in Guilford's model. Fifty subjects, matched for pretest score on a double classification task, were…

  3. Petroleum biodegradation in marine environments.

    PubMed

    Harayama, S; Kishira, H; Kasai, Y; Shutsubo, K

    1999-08-01

    Petroleum-based products are the major source of energy for industry and daily life. Petroleum is also the raw material for many chemical products such as plastics, paints, and cosmetics. The transport of petroleum across the world is frequent, and the amounts of petroleum stocks in developed countries are enormous. Consequently, the potential for oil spills is significant, and research on the fate of petroleum in a marine environment is important to evaluate the environmental threat of oil spills, and to develop biotechnology to cope with them. Crude oil is constituted from thousands of components which are separated into saturates, aromatics, resins and asphaltenes. Upon discharge into the sea, crude oil is subjected to weathering, the process caused by the combined effects of physical, chemical and biological modification. Saturates, especially those of smaller molecular weight, are readily biodegraded in marine environments. Aromatics with one, two or three aromatic rings are also efficiently biodegraded; however, those with four or more aromatic ring are quite resistant to biodegradation. The asphaltene and resin fractions contain higher molecular weight compounds whose chemical structures have not yet been resolved. The biodegradability of these compounds is not yet known. It is known that the concentrations of available nitrogen and phosphorus in seawater limit the growth and activities of hydrocarbon-degrading microorganisms in a marine environment. In other words, the addition of nitrogen and phosphorus fertilizers to an oil-contaminated marine environment can stimulate the biodegradation of spilled oil. This notion was confirmed in the large-scale operation for bioremediation after the oil spill from the Exxon Valdez in Alaska. Many microorganisms capable of degrading petroleum components have been isolated. However, few of them seem to be important for petroleum biodegradation in natural environments. One group of bacteria belonging to the genus

  4. Petroleum biodegradation in marine environments.

    PubMed

    Harayama, S; Kishira, H; Kasai, Y; Shutsubo, K

    1999-08-01

    Petroleum-based products are the major source of energy for industry and daily life. Petroleum is also the raw material for many chemical products such as plastics, paints, and cosmetics. The transport of petroleum across the world is frequent, and the amounts of petroleum stocks in developed countries are enormous. Consequently, the potential for oil spills is significant, and research on the fate of petroleum in a marine environment is important to evaluate the environmental threat of oil spills, and to develop biotechnology to cope with them. Crude oil is constituted from thousands of components which are separated into saturates, aromatics, resins and asphaltenes. Upon discharge into the sea, crude oil is subjected to weathering, the process caused by the combined effects of physical, chemical and biological modification. Saturates, especially those of smaller molecular weight, are readily biodegraded in marine environments. Aromatics with one, two or three aromatic rings are also efficiently biodegraded; however, those with four or more aromatic ring are quite resistant to biodegradation. The asphaltene and resin fractions contain higher molecular weight compounds whose chemical structures have not yet been resolved. The biodegradability of these compounds is not yet known. It is known that the concentrations of available nitrogen and phosphorus in seawater limit the growth and activities of hydrocarbon-degrading microorganisms in a marine environment. In other words, the addition of nitrogen and phosphorus fertilizers to an oil-contaminated marine environment can stimulate the biodegradation of spilled oil. This notion was confirmed in the large-scale operation for bioremediation after the oil spill from the Exxon Valdez in Alaska. Many microorganisms capable of degrading petroleum components have been isolated. However, few of them seem to be important for petroleum biodegradation in natural environments. One group of bacteria belonging to the genus

  5. Spatially Explicit Analysis of Genome-Wide SNPs Detects Subtle Population Structure in a Mobile Marine Mammal, the Harbor Porpoise

    PubMed Central

    Lah, Ljerka; Trense, Daronja; Benke, Harald; Berggren, Per; Gunnlaugsson, Þorvaldur; Lockyer, Christina; Öztürk, Ayaka; Öztürk, Bayram; Pawliczka, Iwona; Roos, Anna; Siebert, Ursula; Víkingsson, Gísli; Tiedemann, Ralph

    2016-01-01

    The population structure of the highly mobile marine mammal, the harbor porpoise (Phocoena phocoena), in the Atlantic shelf waters follows a pattern of significant isolation-by-distance. The population structure of harbor porpoises from the Baltic Sea, which is connected with the North Sea through a series of basins separated by shallow underwater ridges, however, is more complex. Here, we investigated the population differentiation of harbor porpoises in European Seas with a special focus on the Baltic Sea and adjacent waters, using a population genomics approach. We used 2872 single nucleotide polymorphisms (SNPs), derived from double digest restriction-site associated DNA sequencing (ddRAD-seq), as well as 13 microsatellite loci and mitochondrial haplotypes for the same set of individuals. Spatial principal components analysis (sPCA), and Bayesian clustering on a subset of SNPs suggest three main groupings at the level of all studied regions: the Black Sea, the North Atlantic, and the Baltic Sea. Furthermore, we observed a distinct separation of the North Sea harbor porpoises from the Baltic Sea populations, and identified splits between porpoise populations within the Baltic Sea. We observed a notable distinction between the Belt Sea and the Inner Baltic Sea sub-regions. Improved delineation of harbor porpoise population assignments for the Baltic based on genomic evidence is important for conservation management of this endangered cetacean in threatened habitats, particularly in the Baltic Sea proper. In addition, we show that SNPs outperform microsatellite markers and demonstrate the utility of RAD-tags from a relatively small, opportunistically sampled cetacean sample set for population diversity and divergence analysis. PMID:27783621

  6. Structural peculiarities dominate the turgor pressure response of the marine alga Valonia utricularis upon osmotic challenges.

    PubMed

    Heidecker, M; Mimietz, S; Wegner, L H; Zimmermann, U

    2003-03-15

    (-) induced an 'anomalous' hyposmotic turgor pressure response followed by the usual backregulation of pressure. After a 2-day preincubation in ASW(suc), significantly lower sigma(e) values were obtained both hyperosmotically (sigma(eNaCl) = 0.78 +/- 0.14; sigma(esuc) = 0.72 +/- 0.15) and hyposmotically (sigma(eNaCl) = 0.70 +/- 0.17; sigma(esuc) = 0.63 +/- 0.09), probably due to long-term effects on membrane structure to be elucidated yet. The freshwater alga Chara corallina lacked these apparently closely related structural and biophysical features of Valonia.

  7. Multi-scale structure and geographic drivers of cross-infection within marine bacteria and phages

    PubMed Central

    Flores, Cesar O; Valverde, Sergi; Weitz, Joshua S

    2013-01-01

    Bacteriophages are the most abundant biological life forms on Earth. However, relatively little is known regarding which bacteriophages infect and exploit which bacteria. A recent meta-analysis showed that empirically measured phage-bacteria infection networks are often significantly nested, on average, and not modular. A perfectly nested network is one in which phages can be ordered from specialist to generalist such that the host range of a given phage is a subset of the host range of the subsequent phage in the ordering. The same meta-analysis hypothesized that modularity, in which groups of phages specialize on distinct groups of hosts, should emerge at larger geographic and/or taxonomic scales. In this paper, we evaluate the largest known phage-bacteria interaction data set, representing the interaction of 215 phage types with 286 host types sampled from geographically separated sites in the Atlantic Ocean. We find that this interaction network is highly modular. In addition, some of the modules identified in this data set are nested or contain submodules, indicating the presence of multi-scale structure, as hypothesized in the earlier meta-analysis. We examine the role of geography in driving these patterns and find evidence that the host range of phages and the phage permissibility of bacteria is driven, in part, by geographic separation. We conclude by discussing approaches to disentangle the roles of ecology and evolution in driving complex patterns of interaction between phages and bacteria. PMID:23178671

  8. Marine meiobenthic and nematode community structure in Victoria Harbour, Hong Kong upon recovery from sewage pollution.

    PubMed

    Liu, Xiao-Shou; Xu, Wen-Zhe; Cheung, Siu Gin; Shin, Paul K S

    2011-01-01

    Sediment quality, meiofaunal and nematode communities were monitored across six time points at two inside-harbour and three outside-harbour sites over a three-year period in Victoria Harbour, Hong Kong, after the implementation of a sewage treatment project. Twenty-one meiofaunal groups comprising mainly free-living nematodes and harpacticoid copepods and 188 species of free-living nematodes were identified. The outside-harbour area had a more diverse and significantly different nematode community structure as compared to that in the inside-harbour area. Such spatial difference was highly correlated with the total Kjeldahl nitrogen content of the sediments. Over the study period, there was no significant improvement in sediment quality within the harbour. However, in the last sampling time, an increase in meiofaunal abundance and a closer similarity in nematode composition between one of the inside- and outside-harbour sites suggested signs of recovery of the meiofauna as a response to abatement of sewage pollution. PMID:21474152

  9. Global marine pollutants inhibit P-glycoprotein: Environmental levels, inhibitory effects, and cocrystal structure

    PubMed Central

    Nicklisch, Sascha C. T.; Rees, Steven D.; McGrath, Aaron P.; Gökirmak, Tufan; Bonito, Lindsay T.; Vermeer, Lydia M.; Cregger, Cristina; Loewen, Greg; Sandin, Stuart; Chang, Geoffrey; Hamdoun, Amro

    2016-01-01

    The world’s oceans are a global reservoir of persistent organic pollutants to which humans and other animals are exposed. Although it is well known that these pollutants are potentially hazardous to human and environmental health, their impacts remain incompletely understood. We examined how persistent organic pollutants interact with the drug efflux transporter P-glycoprotein (P-gp), an evolutionarily conserved defense protein that is essential for protection against environmental toxicants. We identified specific congeners of organochlorine pesticides, polychlorinated biphenyls, and polybrominated diphenyl ethers that inhibit mouse and human P-gp, and determined their environmental levels in yellowfin tuna from the Gulf of Mexico. In addition, we solved the cocrystal structure of P-gp bound to one of these inhibitory pollutants, PBDE (polybrominated diphenyl ether)–100, providing the first view of pollutant binding to a drug transporter. The results demonstrate the potential for specific binding and inhibition of mammalian P-gp by ubiquitous congeners of persistent organic pollutants present in fish and other foods, and argue for further consideration of transporter inhibition in the assessment of the risk of exposure to these chemicals. PMID:27152359

  10. Global marine pollutants inhibit P-glycoprotein: Environmental levels, inhibitory effects, and cocrystal structure.

    PubMed

    Nicklisch, Sascha C T; Rees, Steven D; McGrath, Aaron P; Gökirmak, Tufan; Bonito, Lindsay T; Vermeer, Lydia M; Cregger, Cristina; Loewen, Greg; Sandin, Stuart; Chang, Geoffrey; Hamdoun, Amro

    2016-04-01

    The world's oceans are a global reservoir of persistent organic pollutants to which humans and other animals are exposed. Although it is well known that these pollutants are potentially hazardous to human and environmental health, their impacts remain incompletely understood. We examined how persistent organic pollutants interact with the drug efflux transporter P-glycoprotein (P-gp), an evolutionarily conserved defense protein that is essential for protection against environmental toxicants. We identified specific congeners of organochlorine pesticides, polychlorinated biphenyls, and polybrominated diphenyl ethers that inhibit mouse and human P-gp, and determined their environmental levels in yellowfin tuna from the Gulf of Mexico. In addition, we solved the cocrystal structure of P-gp bound to one of these inhibitory pollutants, PBDE (polybrominated diphenyl ether)-100, providing the first view of pollutant binding to a drug transporter. The results demonstrate the potential for specific binding and inhibition of mammalian P-gp by ubiquitous congeners of persistent organic pollutants present in fish and other foods, and argue for further consideration of transporter inhibition in the assessment of the risk of exposure to these chemicals. PMID:27152359

  11. Functional and Structural Characterization of FAU Gene/Protein from Marine Sponge Suberites domuncula

    PubMed Central

    Perina, Dragutin; Korolija, Marina; Popović Hadžija, Marijana; Grbeša, Ivana; Belužić, Robert; Imešek, Mirna; Morrow, Christine; Marjanović, Melanija Posavec; Bakran-Petricioli, Tatjana; Mikoč, Andreja; Ćetković, Helena

    2015-01-01

    Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (FAU) gene is down-regulated in human prostate, breast and ovarian cancers. Moreover, its dysregulation is associated with poor prognosis in breast cancer. Sponges (Porifera) are animals without tissues which branched off first from the common ancestor of all metazoans. A large majority of genes implicated in human cancers have their homologues in the sponge genome. Our study suggests that FAU gene from the sponge Suberites domuncula reflects characteristics of the FAU gene from the metazoan ancestor, which have changed only slightly during the course of animal evolution. We found pro-apoptotic activity of sponge FAU protein. The same as its human homologue, sponge FAU increases apoptosis in human HEK293T cells. This indicates that the biological functions of FAU, usually associated with “higher” metazoans, particularly in cancer etiology, possess a biochemical background established early in metazoan evolution. The ancestor of all animals possibly possessed FAU protein with the structure and function similar to evolutionarily more recent versions of the protein, even before the appearance of true tissues and the origin of tumors and metastasis. It provides an opportunity to use pre-bilaterian animals as a simpler model for studying complex interactions in human cancerogenesis. PMID:26198235

  12. Sulfate-reducing bacteria inhabiting natural corrosion deposits from marine steel structures.

    PubMed

    Païssé, Sandrine; Ghiglione, Jean-François; Marty, Florence; Abbas, Ben; Gueuné, Hervé; Amaya, José Maria Sanchez; Muyzer, Gerard; Quillet, Laurent

    2013-08-01

    In the present study, investigations were conducted on natural corrosion deposits to better understand the role of sulfate-reducing bacteria (SRB) in the accelerated corrosion process of carbon steel sheet piles in port environments. We describe the abundance and diversity of total and metabolically active SRB within five natural corrosion deposits located within tidal or low water zone and showing either normal or accelerated corrosion. By using molecular techniques, such as quantitative real-time polymerase chain reaction, denaturing gel gradient electrophoresis, and sequence cloning based on 16S rRNA, dsrB genes, and their transcripts, we demonstrated a clear distinction between SRB population structure inhabiting normal or accelerated low-water corrosion deposits. Although SRB were present in both normal and accelerated low-water corrosion deposits, they dominated and were exclusively active in the inner and intermediate layers of accelerated corrosion deposits. We also highlighted that some of these SRB populations are specific to the accelerated low-water corrosion deposit environment in which they probably play a dominant role in the sulfured corrosion product enrichment.

  13. Structural and functional design of WWTP operation decision support system with a case study.

    PubMed

    Xu, J; Shi, H C; Ke, X Y

    2006-01-01

    This paper developes the WWTP operation decision support system (ODSS) to simulate the dynamic behavior of the WWTP treatment process based on ASMs (activated sludge models) and WWTP experiential knowledge. The novel structure and functions of ODSS can offer more flexible and general instructions to the WWTP operations. The three independent sub-systems, namely expert system, simulation system and training system, can cooperate to achieve many more functions such as operation alert, fault diagnosis, process simulation and so forth. The expert system based on the dynamic simulation, an essential part of WWTP ODSS, has been proved to be feasible and effective by the implementation at Fang Zhuang WWTP. Our results indicated that the WWTP ODSS has significant potential for improving plant performance and reducing treatment costs by assisting the operators at the decision-making level.

  14. 250 °C-Operated sandwich-structured all-SiC power module

    NASA Astrophysics Data System (ADS)

    Kato, Fumiki; Simanjorang, Rejeki; Lang, Fengqun; Nakagawa, Hiroshi; Yamaguchi, Hiroshi; Sato, Hiroshi

    2015-04-01

    The operation of a sandwich structured all-SiC power module is demonstrated at 250 °C. The power module was designed by considering two thermal deformation issues. Thermally induced bending of the SiN-AMC substrates is reduced by introducing symmetrical Cu wiring patterns on both sides of the SiN ceramic plate. The concentration of stress located in the gate joint material is drastically reduced by introducing a trench structure in the Cu wiring layer of the gate interconnection. A double pulse test at a high temperature is carried out. At 250 °C, the all-SiC sandwich-structured power module was successfully operate at 600 V and 15 A. The maximum switching transient speed (dV/dt) of turn-on and turn-off are observed 10.7 and 12.1 V/ns, respectively.

  15. Structure-phase states evolution in rails during a long operation

    SciTech Connect

    Peregudov, Oleg Gromov, Victor Morozov, Konstantin Alsaraeva, Krestina Semina, Olga; Ivanov, Yurii

    2015-10-27

    By methods of scanning and transmission electron microscopy the transformation regularities of structure-phase states, defect substructure, fracture surface of rail surface layer up to 10 mm deep in process of long-term operation (passed tonnage of gross weight 1000 mln tons) were revealed. It has been shown that the surface layer ∼20 μm in thickness has a multiphase, submicro- and nanocrystalline structure and it contains micropores and microcracks. The increased density of bend extinction contours at 2 mm depth from the tread contact surface was noted. The analysis of structure morphological constituents and internal stress fields, created by intra- and interphase boundaries after long operation was carried out. It was shown that the maximum amplitude of stress fields was formed on the interphase boundary the globular cementite particle–matrix. The evaluation of stress fields was done.

  16. Functional identity and functional structure change through succession in a rocky intertidal marine herbivore assemblage.

    PubMed

    Aguilera, Moisés A; Navarrete, Sergio A

    2012-01-01

    Despite the great interest in characterizing the functional structure and resilience of functional groups in natural communities, few studies have examined in which way the roles and relationships of coexisting species change during community succession, a fundamental and natural process that follows the release of new resources in terrestrial and aquatic ecosystems. Variation in algal traits that characterize different phases and stages of community succession on rocky shores are likely to influence the magnitude, direction of effects, and the level of redundancy and complementarity in the diverse assemblage of herbivores. Two separate field experiments were conducted to quantify per capita and population effects and the functional relationship (i.e., redundancy or complementarity) of four herbivore species found in central Chile during early and late algal succession. The first experiment examined grazer effects on the colonization and establishment of early-succession algal species. The second experiment examined effects on the late-successional, dominant corticated alga Mazzaella laminarioides. Complementary laboratory experiments with all species and under natural environmental conditions allowed us to further characterize the collective effects of these species. We found that, during early community succession, all herbivore species had similar effects on the ephemeral algae, ulvoids, but only during the phase of colonization. Once these algae were established, only a subset of the species was able to control their abundance. During late succession, only the keyhole limpet Fissurella crassa could control corticated Mazzaella. The functional relationships among these species changed dramatically from redundant effects on ephemeral algae during early colonization, to a more complementary role on established early-successional algae, to a dominant (i.e., keystone) effect on late succession. This study highlights that functional relationship within consumer

  17. Mortality, survival and residual injury burden of Royal Navy and Royal Marine combat casualties sustained in 11-years of operations in Iraq and Afghanistan.

    PubMed

    Penn-Barwell, J; Fries, C A; Bennett, P M; Midwinter, M J; Baker, A

    2014-01-01

    We present eleven years of prospectively-gathered data defining the full spectrum of the United Kingdom's (UK) Naval Service (Royal Navy and Royal Marines) casualties, and characterise the injury patterns, recovery and residual functional burden from the conflicts of the last decade. The UK Military Trauma Registry was searched for all Naval Service personnel injured between March 2003 and April 2013. These records were then cross-referenced with the records of the Naval Service Medical Board of Survey (NSMBOS), which evaluates injured Naval Service personnel for medical discharge, continued service in a reduced capacity or Return to Full Duty (RTD). Population at risk data was calculated from service records. There were 277 casualties in the study period: 63 (23%) of these were fatalities. Of the 214 survivors, 63 or 29% (23% of total) were medically discharged; 24 or 11% (9% of total) were placed in a reduced fitness category with medical restrictions placed on their continued military service. A total of 127 individuals (46% of the total and 59% of survivors) RTD without any restriction. The greatest number of casualties was sustained in 2007. There was a 3% casualty risk per year of operational service for Naval Service personnel. The most common reason cited by Naval Service Medical Board of Survey (NSMBOS) for medical downgrading or discharge was injury to the lower limb, with upper limb trauma the next most frequent. This study characterises the spectrum of injuries sustained by the Naval Service during recent conflicts with a very high rate of follow-up. Extremity injuries pose the biggest challenge to reconstructive and rehabilitative services striving to maximise the functional outcomes of injured service personnel. PMID:25335311

  18. Intelligent adaptive structures

    NASA Technical Reports Server (NTRS)

    Wada, Ben K.

    1990-01-01

    'Intelligent Adaptive Structures' (IAS) refers to structural systems whose geometric and intrinsic structural characteristics can be automatically changed to meet mission requirements with changing operational scenarios. An IAS is composed of actuators, sensors, and a control logic; these are integrated in a distributed fashion within the elements of the structure. The IAS concepts thus far developed for space antennas and other precision structures should be applicable to civil, marine, automotive, and aeronautical structural systems.

  19. The Structured Operational Research and Training Initiative for public health programmes.

    PubMed

    Ramsay, A; Harries, A D; Zachariah, R; Bissell, K; Hinderaker, S G; Edginton, M; Enarson, D A; Satyanarayana, S; Kumar, A M V; Hoa, N B; Tweya, H; Reid, A J; Van den Bergh, R; Tayler-Smith, K; Manzi, M; Khogali, M; Kizito, W; Ali, E; Delaunois, P; Reeder, J C

    2014-06-21

    In 2009, the International Union Against Tuberculosis and Lung Disease (The Union) and Médecins sans Frontières Brussels-Luxembourg (MSF) began developing an outcome-oriented model for operational research training. In January 2013, The Union and MSF joined with the Special Programme for Research and Training in Tropical Diseases (TDR) at the World Health Organization (WHO) to form an initiative called the Structured Operational Research and Training Initiative (SORT IT). This integrates the training of public health programme staff with the conduct of operational research prioritised by their programme. SORT IT programmes consist of three one-week workshops over 9 months, with clearly-defined milestones and expected output. This paper describes the vision, objectives and structure of SORT IT programmes, including selection criteria for applicants, the research projects that can be undertaken within the time frame, the programme structure and milestones, mentorship, the monitoring and evaluation of the programmes and what happens beyond the programme in terms of further research, publications and the setting up of additional training programmes. There is a growing national and international need for operational research and related capacity building in public health. SORT IT aims to meet this need by advocating for the output-based model of operational research training for public health programme staff described here. It also aims to secure sustainable funding to expand training at a global and national level. Finally, it could act as an observatory to monitor and evaluate operational research in public health. Criteria for prospective partners wishing to join SORT IT have been drawn up.

  20. Research output after participants complete a Structured Operational Research and Training (SORT IT) course.

    PubMed

    Guillerm, N; Tayler-Smith, K; Dar Berger, S; Bissell, K; Kumar, A M V; Ramsay, A; Reid, A J; Zachariah, R; Harries, A D

    2015-12-21

    Eighteen months after successfully completing one of six Structured Operational Research and Training Initiative (SORT IT) courses, e-mail questionnaires assessing post-course research output were returned by 63 participants (100% response rate). Thirty-two (51%) participants had completed new research projects, 24 (38%) had published papers, 28 (44%) had presented abstracts at conferences, 15 (24%) had facilitated at further OR courses, and 21 (33%) had reviewed scientific papers. Seven (11%) had secured further research funding and 22 (35%) stated that their institutions were involved in implementation or capacity building in operational research. Significant research output continues beyond course completion, further endorsing the value of the SORT IT model.

  1. Lagrangian Coherent Structures (LCS) and the dispersion of algal bloom and marine debris in the Yellow and East China Sea

    NASA Astrophysics Data System (ADS)

    Kim, Y. H.; Choi, B.; Son, Y. B.; Shim, W. J.; Hwang, J. H.; Park, Y.

    2012-12-01

    Series of satellite images show that the development and migration of green macroalgal bloom (known as Ulva prolifera) in the Yellow Sea (YS) and Eastern China Sea (ECS). This presentation will utilize the Lagrangian Coherent Structures (LCS) analysis to demonstrate the dispersion pattern of algal bloom patches. Analyzing LCS such as stable and unstable manifolds is one of emerging technologies for characterizing Lagrangian pathways in aquatic environments. This approach is based on the assumption that unstable manifolds such as ridges (i.e., high values) in the finite-time Lyapunov exponent (FTLE) fields coincide with material transport barriers. In this study, the FTLE fields were computed from gridded trajectories using flow fields provided by Regional Ocean Modeling System (ROMS) in the YS/ECS during summer 2011. The results show that there exist two strong transport barriers that lie along the east-west direction, at least, for the simulation period; one is located from the north of Changjiang River mouth to the middle of the Yellow Sea and the other one is stretched from the south of Shandong Peninsular toward east/southeast. This LCS analysis suggests that patches of green algae developed in the coastal region of Jiangsu Province during summer may migrate toward east into the middle of the YS or even toward Korean coast rather than extending along the Jiangsu coast, which is consistent with the observation results derived from the satellite ocean color data. In the very same manner, the utilization of LCS results to evaluate the distribution/transport pattern of marine debris in the YS/ECS will also be discussed during the presentation.

  2. Impact of Operating Context on the Use of Structure in Air Traffic Controller Cognitive Processes

    NASA Technical Reports Server (NTRS)

    Davison, Hayley J.; Histon, Jonathan M.; Ragnarsdottir, Margret Dora; Major, Laura M.; Hansman, R. John

    2004-01-01

    This paper investigates the influence of structure on air traffic controllers cognitive processes in the TRACON, En Route, and Oceanic environments. Radar data and voice command analyses were conducted to support hypotheses generated through observations and interviews conducted at the various facilities. Three general types of structure-based abstractions (standard flows, groupings, and critical points) have been identified as being used in each context, though the details of their application varied in accordance with the constraints of the particular operational environment. Projection emerged as a key cognitive process aided by the structure-based abstractions, and there appears to be a significant difference between how time-based versus spatial-based projection is performed by controllers. It is recommended that consideration be given to the value provided by the structure-based abstractions to the controller as well as to maintain consistency between the type (time or spatial) of information support provided to the controller.

  3. Ocean currents influence the genetic structure of an intertidal mollusc in southeastern Australia – implications for predicting the movement of passive dispersers across a marine biogeographic barrier

    PubMed Central

    Miller, Adam D; Versace, Vincent L; Matthews, Ty G; Montgomery, Steven; Bowie, Kate C

    2013-01-01

    Major disjunctions among marine communities in southeastern Australia have been well documented, although explanations for biogeographic structuring remain uncertain. Converging ocean currents, environmental gradients, and habitat discontinuities have been hypothesized as likely drivers of structuring in many species, although the extent to which species are affected appears largely dependent on specific life histories and ecologies. Understanding these relationships is critical to the management of native and invasive species, and the preservation of evolutionary processes that shape biodiversity in this region. In this study we test the direct influence of ocean currents on the genetic structure of a passive disperser across a major biogeographic barrier. Donax deltoides (Veneroida: Donacidae) is an intertidal, soft-sediment mollusc and an ideal surrogate for testing this relationship, given its lack of habitat constraints in this region, and its immense dispersal potential driven by year-long spawning and long-lived planktonic larvae. We assessed allele frequencies at 10 polymorphic microsatellite loci across 11 sample locations spanning the barrier region and identified genetic structure consistent with the major ocean currents of southeastern Australia. Analysis of mitochondrial DNA sequence data indicated no evidence of genetic structuring, but signatures of a species range expansion corresponding with historical inundations of the Bassian Isthmus. Our results indicate that ocean currents are likely to be the most influential factor affecting the genetic structure of D. deltoides and a likely physical barrier for passive dispersing marine fauna generally in southeastern Australia. PMID:23762511

  4. Mariner-Venus 1967

    NASA Technical Reports Server (NTRS)

    1971-01-01

    Detailed information on the spacecraft performance, mission operations, and tracking and data acquisition is presented for the Mariner Venus 1967 and Mariner Venus 1967 extension projects. Scientific and engineering results and conclusions are discussed, and include the scientific mission, encounter with Venus, observations near Earth, and cruise phase of the mission. Flight path analysis, spacecraft subsystems, and mission-related hardware and computer program development are covered. The scientific experiments carried by Mariner 5 were ultraviolet photometer, solar plasma probe, helium magnetometer, trapped radiation detector, S-band radio occultation, dual-frequency radio propagation, and celestial mechanics. The engineering experience gained by converting a space Mariner Mars 1964 spacecraft into one flown to Venus is also described.

  5. Identification and quantification of vortical structures in wind turbine wakes for operational wake modeling

    NASA Astrophysics Data System (ADS)

    Marichal, Y.; De Visscher, I.; Chatelain, P.; Winckelmans, G.

    2016-09-01

    The present paper describes a method to quantify the vortical structure characteristics from simulation results of the flow past a wind turbine, with the aim to develop an accurate, physics-based operational wake model. The wake centerline is first identified. Then, the flow characteristics are extracted by fitting a vorticity-based wake skeleton onto the velocity deficit profiles defined around the centerline and measured at several downstream distances from the rotor. The simulation results were obtained using a hybrid Vortex Particle-Mesh approach combined with an immersed Lifting Line technique to account for the blades. The characterization of the identified vortex wake structure lays a basis for the development of an operational wake model based on strong physical grounds.

  6. Use of structured personality survey techniques to indicate operator response to stressful situations

    SciTech Connect

    Waller, M.A.

    1990-01-01

    Under given circumstances, a person will tend to operate in one of four dominant orientations: (1) to perform tasks; (2) to achieve consensus; (3) to achieve understanding, or (4) to maintain structure. Historically, personality survey techniques, such as the Myers-Briggs type indicator, have been used to determine these tendencies. While these techniques can accurately reflect a person's orientation under normal social situations, under different sets of conditions, the same person may exhibit other tendencies, displaying a similar or entirely different orientation. While most do not exhibit extreme tendencies or changes of orientation, the shift in personality from normal to stressful conditions can be rather dramatic, depending on the individual. Structured personality survey techniques have been used to indicate operator response to stressful situations. These techniques have been extended to indicate the balance between orientations that the control room team has through the various levels of cognizance.

  7. Structured methods for identifying and correcting potential human errors in aviation operations

    SciTech Connect

    Nelson, W.R.

    1997-10-01

    Human errors have been identified as the source of approximately 60% of the incidents and accidents that occur in commercial aviation. It can be assumed that a very large number of human errors occur in aviation operations, even though in most cases the redundancies and diversities built into the design of aircraft systems prevent the errors from leading to serious consequences. In addition, when it is acknowledged that many system failures have their roots in human errors that occur in the design phase, it becomes apparent that the identification and elimination of potential human errors could significantly decrease the risks of aviation operations. This will become even more critical during the design of advanced automation-based aircraft systems as well as next-generation systems for air traffic management. Structured methods to identify and correct potential human errors in aviation operations have been developed and are currently undergoing testing at the Idaho National Engineering and Environmental Laboratory (INEEL).

  8. Optimizing Canal Structure Operation Using Meta-heuristic Algorithms in the Treasure Valley, Idaho

    NASA Astrophysics Data System (ADS)

    Hernandez, J.; Ha, W.; Campbell, A.

    2012-12-01

    The computer program that was proven to produce optimal operational solutions for open-channel irrigation conveyance and distribution networks for synthetic data in previous research was tested for real world data. Data gathered from databases and the field by the Boise Project, Idaho, provided input to the hydraulic model for the physical characteristics of the conveyance system. We selected three reaches of the Deer Flat Low Line in the Treasure Valley for optimizing actual gate operations. The total of 59.1 km canal with a maximum capacity of 34 m3/s irrigates mainly corn, wheat, sugar-beet and potato crops. The computer model uses an accuracy-based learning classifier system (XCS) with an embedded genetic algorithm to produce optimal rules for gate structure operation in irrigation canals. Rules are generated through the exploration and exploitation of genetic algorithm population, with the support of RootCanal, an unsteady-state hydraulic simulation model. The objective function was set for satisfying variable demand along three reaches while minimizing water level deviations from target. All canal gate structures operate simultaneously while maintaining water depth near target values during variable-demand periods, with a hydraulically stabilized system. It is noteworthy to mention that this very simple 3-reach problem, requires the computer performing several thousand simulations during continuous days for finding plausible solutions. The model is currently simulating the Deer Flat Low Line Canal in Caldwell, Idaho with promising results. The population evolution is measured by a fitness parameter, which shows that canal structure operations generated by the model are improving towards plausible solutions. This research is one step forward for optimizing the way we use and manage water resources. Relying on management practices of the past will no longer work in a world that is impacted by global climate variability.

  9. Structure-Activity Relationship and in Vivo Anti-Tumor Evaluations of Dictyoceratin-A and -C, Hypoxia-Selective Growth Inhibitors from Marine Sponge.

    PubMed

    Sumii, Yuji; Kotoku, Naoyuki; Fukuda, Akinori; Kawachi, Takashi; Arai, Masayoshi; Kobayashi, Motomasa

    2015-12-01

    Oral dictyoceratin-C (1) and A (2), hypoxia-selective growth inhibitors, showed potent in vivo antitumor effects in mice subcutaneously inoculated with sarcoma S180 cells. Structurally modified analogs were synthesized to assess the structure-activity relationship of the natural compounds 1 and 2 isolated from a marine sponge. Biological evaluation of these analogs showed that the exo-olefin and hydroxyl and methyl ester moieties were important for the hypoxia-selective growth inhibitory activities of 1 and 2. Thus far, only substitution of the methyl ester with propargyl amide in 1 was found to be effective for the synthesis of probe molecules for target identification.

  10. Structure-Activity Relationship and in Vivo Anti-Tumor Evaluations of Dictyoceratin-A and -C, Hypoxia-Selective Growth Inhibitors from Marine Sponge.

    PubMed

    Sumii, Yuji; Kotoku, Naoyuki; Fukuda, Akinori; Kawachi, Takashi; Arai, Masayoshi; Kobayashi, Motomasa

    2015-12-01

    Oral dictyoceratin-C (1) and A (2), hypoxia-selective growth inhibitors, showed potent in vivo antitumor effects in mice subcutaneously inoculated with sarcoma S180 cells. Structurally modified analogs were synthesized to assess the structure-activity relationship of the natural compounds 1 and 2 isolated from a marine sponge. Biological evaluation of these analogs showed that the exo-olefin and hydroxyl and methyl ester moieties were important for the hypoxia-selective growth inhibitory activities of 1 and 2. Thus far, only substitution of the methyl ester with propargyl amide in 1 was found to be effective for the synthesis of probe molecules for target identification. PMID:26694423

  11. New insights on shallow and deep crustal geological structures of BABEL line 7 marine reflection seismic data revealed from reprocessing

    NASA Astrophysics Data System (ADS)

    Shahrokhi, H.; Malehmir, A.; Sopher, D.

    2012-04-01

    The BABEL project (Baltic And Bothnian Echoes from the Lithosphere) was a collaboration among British, Danish, Finnish, German and Swedish geoscientists to collect deep-crustal reflection and wide-angle refraction profiles in Baltic Shield and Gulf of Bothnia. The acquisition of 2,268km of deep marine reflection seismic data was carried out in 1989. The BABEL line 7 runs in E-W direction in the Bothnian Sea, north of the Åland islands and east of the city of Gävle. Several authors presented the seismic results but with a main focus of imaging and interpreting deep crustal geological structures and the nature and the depth of Moho discontinuity along line 7. Based on this seismic data, several publications about velocity distributions within the crust, the depth and texture of Moho discontinuity and seismic reflectivity patterns in the crust were presented. Some evidence from the reflection seismic data was also presented to suggest Early Proterozoic plate tectonics in the Baltic Shield. Previous seismic images of the BABEL line 7 reflection data show a dramatic change in the reflectivity pattern from weakly reflective lower crust in the west to a more reflective lower crust in the east, which was attributed to a change from a rigid crust to a plastic crust from the west to the east. The BABEL line 7 reflection data were acquired with a total profile length of 174km, a set of 48 airguns towed at 7.5m depth, and 3000m long streamer with 60 channels spaced with 50m intervals and towed at 15m depth. Seismic data were recorded for 25s using 4ms sampling interval and 75m shot interval. Seismic data is characterized by strong source-generated noise at shallow travel times and strong but randomly distributed spurious spikes at later arrival times. In this study, we have recovered and reprocessed the seismic data along BABEL line 7. Using modern processing and imaging techniques, which were not available at the time, and with a focus on the shallow parts of the seismic

  12. Modified Adaptive Control for Region 3 Operation in the Presence of Wind Turbine Structural Modes

    NASA Technical Reports Server (NTRS)

    Frost, Susan Alane; Balas, Mark J.; Wright, Alan D.

    2010-01-01

    Many challenges exist for the operation of wind turbines in an efficient manner that is reliable and avoids component fatigue and failure. Turbines operate in highly turbulent environments resulting in aerodynamic loads that can easily excite turbine structural modes, possibly causing component fatigue and failure. Wind turbine manufacturers are highly motivated to reduce component fatigue and failure that can lead to loss of revenue due to turbine down time and maintenance costs. The trend in wind turbine design is toward larger, more flexible turbines that are ideally suited to adaptive control methods due to the complexity and expense required to create accurate models of their dynamic characteristics. In this paper, we design an adaptive collective pitch controller for a high-fidelity simulation of a utility-scale, variable-speed horizontal axis wind turbine operating in Region 3. The objective of the adaptive pitch controller is to regulate generator speed, accommodate wind gusts, and reduce the excitation of structural modes in the wind turbine. The control objective is accomplished by collectively pitching the turbine blades. The adaptive collective pitch controller for Region 3 was compared in simulations with a baseline classical Proportional Integrator (PI) collective pitch controller. The adaptive controller will demonstrate the ability to regulate generator speed in Region 3, while accommodating gusts, and reducing the excitation of certain structural modes in the wind turbine.

  13. Crystal Structure of the lamda Repressor and a Model for Pairwise Cooperative Operator Binding

    SciTech Connect

    Stayrook,S.; Jaru-Ampornpan, P.; Ni, J.; Hochschild, A.; Lewis, M.

    2008-01-01

    Bacteriophage {lambda} has for many years been a model system for understanding mechanisms of gene regulation1. A 'genetic switch' enables the phage to transition from lysogenic growth to lytic development when triggered by specific environmental conditions. The key component of the switch is the cI repressor, which binds to two sets of three operator sites on the chromosome that are separated by about 2,400 base pairs (bp)2, 3. A hallmark of the system is the pairwise cooperativity of repressor binding4. In the absence of detailed structural information, it has been difficult to understand fully how repressor molecules establish the cooperativity complex. Here we present the X-ray crystal structure of the intact cI repressor dimer bound to a DNA operator site. The structure of the repressor, determined by multiple isomorphous replacement methods, reveals an unusual overall architecture that allows it to adopt a conformation that appears to facilitate pairwise cooperative binding to adjacent operator sites.

  14. Advances in X-Band TW Accelerator Structures Operating in the 100 MV/M Regime

    SciTech Connect

    Higo, Toshiyasu; Higashi, Yasuo; Matsumoto, Shuji; Yokoyama, Kazue; Adolphsen, Chris; Dolgashev, Valery; Jensen, Aaron; Laurent, Lisa; Tantawi, Sami; Wang, Faya; Wang, Juwen; Dobert, Steffen; Grudiev, Alexej; Riddone, Germana; Wuensch, Walter; Zennaro, Riccardo; /CERN

    2012-07-05

    A CERN-SLAC-KEK collaboration on high gradient X-band accelerator structure development for CLIC has been ongoing for three years. The major outcome has been the demonstration of stable 100 MV/m gradient operation of a number of CLIC prototype structures. These structures were fabricated using the technology developed from 1994 to 2004 for the GLC/NLC linear collider initiative. One of the goals has been to refine the essential parameters and fabrication procedures needed to realize such a high gradient routinely. Another goal has been to develop structures with stronger dipole mode damping than those for GLC/NLC. The latter requires that the surface temperature rise during the pulse be higher, which may increase the breakdown rate. One structure with heavy damping has been RF processed and another is nearly finished. The breakdown rates of these structures were found to be higher by two orders of magnitude compared to those with equivalent acceleration mode parameters but without the damping features. This paper presents these results together with some of the earlier results from non-damped structures.

  15. Warehousing Operations.

    ERIC Educational Resources Information Center

    Marine Corps Inst., Washington, DC.

    Developed as part of the Marine Corps Institute (MCI) correspondence training program, this course on warehousing operations is designed to provide instruction in the procedures used in warehousing operations. Introductory materials include specific information for MCI students and a study guide (guidelines to complete the course). The 22-hour…

  16. Structural characterization and condition for measurement statistics preservation of a unital quantum operation

    NASA Astrophysics Data System (ADS)

    Lee, Kai-Yan; Fung, Chi-Hang Fred; Chau, H. F.

    2013-05-01

    We investigate the necessary and sufficient condition for a convex cone of positive semidefinite operators to be fixed by a unital quantum operation ϕ acting on finite-dimensional quantum states. By reducing this problem to the problem of simultaneous diagonalization of the Kraus operators associated with ϕ, we can completely characterize the kinds of quantum states that are fixed by ϕ. Our work has several applications. It gives a simple proof of the structural characterization of a unital quantum operation that acts on finite-dimensional quantum states—a result not explicitly mentioned in earlier studies. It also provides a necessary and sufficient condition for determining what kind of measurement statistics is preserved by a unital quantum operation. Finally, our result clarifies and extends the work of Størmer by giving a proof of a reduction theorem on the unassisted and entanglement-assisted classical capacities, coherent information, and minimal output Renyi entropy of a unital channel acting on a finite-dimensional quantum state.

  17. Sediments, structural framework, petroleum potential, environmental conditions, and operational considerations of the United States South Atlantic Outer Continental Shelf

    USGS Publications Warehouse

    ,

    1975-01-01

    The area designated for possible oil and gas lease sale in Bureau of Land Management memorandum 3310 #43 (722) and referred to therein as part of the United States South Atlantic Outer Continental Shelf (OCS) contains about 98,000 square kilometres of the continental margin seaward of the 3 mile offshore limit and within the 600 metre isobath. The designated area, offshore of North Carolina, South Carolina, Georgia, and Florida, encompasses parts of three physiographic provinces: the Continental Shelf, the Florida-Hatteras Slope, and the Blake Plateau. The structural framework of the U.3. South Atlantic region is dominated by the Southeast Georgia Embayment --an east-plunging depression recessed into the Atlantic Coastal Plain and shelf between Cape Fear, North Carolina and Jacksonville, Florida. The embayment is bounded to the north by the Cape Fear Arch and to southeast by the Peninsular Arch. Refraction data indicate a minor basement(?) ridge beneath the outer shelf between 30? and 32?N at 80?W. Drill hole data also suggest a gentle fold or accretionary structure (reef?) off the east coast of Florida. Several other structural features have been identified by refraction and reflection techniques and drilling. These are the Yamacraw Uplift, Burton High, Stone Arch, and the Suwannee Channel. Gravity and magnetic anomalies within the area probably result from emplacement of magma bodies along linear features representing fundamental crustal boundaries. Of these anomalies, the most prominent, is a segment of the East Coast Magnetic Anomaly which crosses the coast at Brunswick, Georgia. This anomaly has been interpreted as representing an ancient continental boundary where two formerly separate continental plates collided and were welded together. There may be as much as 5,000 m of sedimentary rocks in the Southeast Georgia Embayment out to the 600 m isobath. Basement rocks beneath the Southeast Georgia Embayment are expected to be similar to those exposed in the

  18. Operational modal analysis via image based technique of very flexible space structures

    NASA Astrophysics Data System (ADS)

    Sabatini, Marco; Gasbarri, Paolo; Palmerini, Giovanni B.; Monti, Riccardo

    2013-08-01

    Vibrations represent one of the most important topics of the engineering design relevant to flexible structures. The importance of this problem increases when a very flexible system is considered, and this is often the case of space structures. In order to identify the modal characteristics, in terms of natural frequencies and relevant modal parameters, ground tests are performed. However, these parameters could vary due to the operative conditions of the system. In order to continuously monitor the modal characteristics during the satellite lifetime, an operational modal analysis is mandatory. This kind of analysis is usually performed by using classical accelerometers or strain gauges and by properly analyzing the acquired output. In this paper a different approach for the vibrations data acquisition will be performed via image-based technique. In order to simulate a flexible satellite, a free flying platform is used; the problem is furthermore complicated by the fact that the overall system, constituted by a highly rigid bus and very flexible panels, must necessarily be modeled as a multibody system. In the experimental campaign, the camera, placed on the bus, will be used to identify the eigenfrequencies of the vibrating structure; in this case aluminum thin plates simulate very flexible solar panels. The structure is excited by a hammer or studied during a fast attitude maneuver. The results of the experimental activity will be investigated and compared with respect to the numerical simulation obtained via a FEM-multibody software and the relevant results will be proposed and discussed.

  19. Marine biology

    SciTech Connect

    Thurman, H.V.; Webber, H.H.

    1984-01-01

    This book discusses both taxonomic and ecological topics on marine biology. Full coverage of marine organisms of all five kingdoms is provided, along with interesting and thorough discussion of all major marine habitats. Organization into six major parts allows flexibility. It also provides insight into important topics such as disposal of nuclear waste at sea, the idea that life began on the ocean floor, and how whales, krill, and people interact. A full-color photo chapter reviews questions, and exercises. The contents are: an overview marine biology: fundamental concepts/investigating life in the ocean; the physical ocean, the ocean floor, the nature of water, the nature and motion of ocean water; general ecology, conditions for life in the sea, biological productivity and energy transfer; marine organisms; monera, protista, mycota and metaphyta; the smaller marine animals, the large animals marine habitats, the intertidal zone/benthos of the continental shelf, the photic zone, the deep ocean, the ocean under stress, marine pollution, appendix a: the metric system and conversion factors/ appendix b: prefixes and suffixes/ appendix c: taxonomic classification of common marine organisms, and glossary, and index.

  20. Marine & hydrokinetic technology development.

    SciTech Connect

    LiVecchi, Al; Jepsen, Richard Alan

    2010-06-01

    The Wind and Water Power Program supports the development of marine and hydrokinetic devices, which capture energy from waves, tides, ocean currents, the natural flow of water in rivers, and marine thermal gradients, without building new dams or diversions. The program works closely with industry and the Department of Energy's national laboratories to advance the development and testing of marine and hydrokinetic devices. In 2008, the program funded projects to develop and test point absorber, oscillating wave column, and tidal turbine technologies. The program also funds component design, such as techniques for manufacturing and installing coldwater pipes critical for ocean thermal energy conversion (OTEC) systems. Rigorous device testing is necessary to validate and optimize prototypes before beginning full-scale demonstration and deployment. The program supports device testing by providing technology developers with information on testing facilities. Technology developers require access to facilities capable of simulating open-water conditions in order to refine and validate device operability. The program has identified more than 20 tank testing operators in the United States with capabilities suited to the marine and hydrokinetic technology industry. This information is available to the public in the program's Hydrodynamic Testing Facilities Database. The program also supports the development of open-water, grid-connected testing facilities, as well as resource assessments that will improve simulations done in dry-dock and closed-water testing facilities. The program has established two university-led National Marine Renewable Energy Centers to be used for device testing. These centers are located on coasts and will have open-water testing berths, allowing researchers to investigate marine and estuary conditions. Optimal array design, development, modeling and testing are needed to maximize efficiency and electricity generation at marine and hydrokinetic power

  1. Structural Integrity of ESBWR Primary Containment for 60-Years of Thermal Duty Cycle Operations

    SciTech Connect

    James, R.J.; Rashid, Y.R.; Liu, A.S.; Gou, B.

    2006-07-01

    GE's latest evolution of the boiling water reactor, the ESBWR, has innovative passive design features that reduce the number and complexity of active systems, which in turn provide economic advantages while also increasing safety. To incorporate these passive cooling features, the Isolation Condenser Passive Cooling Containment System Pools (IC/PCCS) are integrated onto the top slab of the primary containment structure. The top slab spans the 36-meter diameter containment drywell with a central 10.5-meter diameter opening for the drywell head while supporting the water and equipment in these upper pools. The walls of the upper pools along with the refueling floor slab over the pools are designed as a deep beam girder as part of the structural system of the top slab. During normal operations, the Isolation Condenser (IC) pool will undergo duty cycles where the water gets rapidly heated to boiling for some period of time and then cools back down. This top slab structural system is subjected to the elevated temperatures that occur in the IC pools and to thermal cycling due to temperature changes in the pools and in the drywell portion of the containment during shutdowns. These cyclic thermal demands interact with a changing structural condition because of concrete cracking, creep, and property degradation at elevated temperatures. Thus, there is a potential for structural ratcheting of the slab that would be manifested by continually increasing deformations over time under the thermal cycling while supporting the pool loads. The long-term structural integrity of the top slab as a containment boundary must be verified for this duty cycle operation over the 60-year design life. (authors)

  2. Neuroprotective Effects of Marine Algae

    PubMed Central

    Pangestuti, Ratih; Kim, Se-Kwon

    2011-01-01

    The marine environment is known as a rich source of chemical structures with numerous beneficial health effects. Among marine organisms, marine algae have been identified as an under-exploited plant resource, although they have long been recognized as valuable sources of structurally diverse bioactive compounds. Presently, several lines of studies have provided insight into biological activities and neuroprotective effects of marine algae including antioxidant, anti-neuroinflammatory, cholinesterase inhibitory activity and the inhibition of neuronal death. Hence, marine algae have great potential to be used for neuroprotection as part of pharmaceuticals, nutraceuticals and functional foods. This contribution presents an overview of marine algal neuroprotective effects and their potential application in neuroprotection. PMID:21673890

  3. Delineating ecological regions in marine systems: Integrating physical structure and community composition to inform spatial management in the eastern Bering Sea

    NASA Astrophysics Data System (ADS)

    Baker, Matthew R.; Hollowed, Anne B.

    2014-11-01

    Characterizing spatial structure and delineating meaningful spatial boundaries have useful applications to understanding regional dynamics in marine systems, and are integral to ecosystem approaches to fisheries management. Physical structure and drivers combine with biological responses and interactions to organize marine systems in unique ways at multiple scales. We apply multivariate statistical methods to define spatially coherent ecological units or ecoregions in the eastern Bering Sea. We also illustrate a practical approach to integrate data on species distribution, habitat structure and physical forcing mechanisms to distinguish areas with distinct biogeography as one means to define management units in large marine ecosystems. We use random forests to quantify the relative importance of habitat and environmental variables to the distribution of individual species, and to quantify shifts in multispecies assemblages or community composition along environmental gradients. Threshold shifts in community composition are used to identify regions with distinct physical and biological attributes, and to evaluate the relative importance of predictor variables to determining regional boundaries. Depth, bottom temperature and frontal boundaries were dominant factors delineating distinct biological communities in this system, with a latitudinal divide at approximately 60°N. Our results indicate that distinct climatic periods will shift habitat gradients and that dynamic physical variables such as temperature and stratification are important to understanding temporal stability of ecoregion boundaries. We note distinct distribution patterns among functional guilds and also evidence for resource partitioning among individual species within each guild. By integrating physical and biological data to determine spatial patterns in community composition, we partition ecosystems along ecologically significant gradients. This may provide a basis for defining spatial management

  4. Influence of cloth structure on operational characteristics of pulse-jet cleaned filter bags

    SciTech Connect

    Hindy, K.T.; Sievert, J.; Loeffler, F.

    1987-01-01

    An investigation on the effect of the surface properties and the cloth structure of a filter medium on the operation of a filter bag was conducted using a pilot-scale testing device. The collection properties and the increase in the residual drop, as well as the mass of the residual dust embedded within the filter medium, were measured. Three filter media were investigated: a singed filter medium, a calendered filter medium, and one with a membrane-laminated surface. The experimental results obtained show that the operational characteristics of a filter bag is greatly influenced by the surface properties and the cloth structure of the filter medium. The calendered filter bag has an unfavorable operational quality concerning both the collection properties and the residual pressure drop. The hard thickening of the filter medium drives to the rapid clogging of the filter bag. In contrast, the other two filter media have favorable characteristics concerning the above two criteria. At the same time, it was found that after tests conducted for about 70 h each, the singed filter bag, compared with the membrane-laminated one, exhibits a lower residual pressure drop, although more particles are deposited inside. The lowest filtration cycle duration was recorded by the calendered medium, whereas the cleaning frequency by the other two media was nearly in the same range.

  5. Sequence stratigraphic and sedimentologic significance of biogenic structures from a late Paleozoic marginal- to open-marine reservoir, Morrow Sandstone, subsurface of southwest Kansas, USA

    USGS Publications Warehouse

    Buatois, L.A.; Mangano, M.G.; Alissa, A.; Carr, T.R.

    2002-01-01

    Integrated ichnologic, sedimentologic, and stratigraphic studies of cores and well logs from Lower Pennsylvanian oil and gas reservoirs (lower Morrow Sandstone, southwest Kansas) allow distinction between fluvio-estuarine and open marine deposits in the Gentzler and Arroyo fields. The fluvio-estuarine facies assemblage is composed of both interfluve and valley-fill deposits, encompassing a variety of depositional environments such as fluvial channel, interfluve paleosol, bay head delta, estuary bay, restricted tidal flat, intertidal channel, and estuary mouth. Deposition in a brackish-water estuarine valley is supported by the presence of a low diversity, opportunistic, impoverished marine ichnofaunal assemblage dominated by infaunal structures, representing an example of a mixed, depauperate Cruziana and Skolithos ichnofacies. Overall distribution of ichnofossils along the estuarine valley was mainly controlled by the salinity gradient, with other parameters, such as oxygenation, substrate and energy, acting at a more local scale. The lower Morrow estuarine system displays the classical tripartite division of wave-dominated estuaries (i.e. seaward-marine sand plug, fine-grained central bay, and sandy landward zone), but tidal action is also recorded. The estuarine valley displays a northwest-southeast trend, draining to the open sea in the southeast. Recognition of valley-fill sandstones in the lower Morrow has implications for reservoir characterization. While the open marine model predicts a "layer-cake" style of facies distribution as a consequence of strandline shoreline progradation, identification of valley-fill sequences points to more compartmentalized reservoirs, due to the heterogeneity created by valley incision and subsequent infill. The open-marine facies assemblage comprises upper, middle, and lower shoreface; offshore transition; offshore; and shelf deposits. In contrast to the estuarine assemblage, open marine ichnofaunas are characterized by a

  6. Sequence stratigraphic and sedimentologic significance of biogenic structures from a late Paleozoic marginal- to open-marine reservoir, Morrow Sandstone, subsurface of southwest Kansas, USA

    NASA Astrophysics Data System (ADS)

    Buatois, Luis A.; Mángano, M. Gabriela; Alissa, Abdulrahman; Carr, Timothy R.

    2002-09-01

    Integrated ichnologic, sedimentologic, and stratigraphic studies of cores and well logs from Lower Pennsylvanian oil and gas reservoirs (lower Morrow Sandstone, southwest Kansas) allow distinction between fluvio-estuarine and open marine deposits in the Gentzler and Arroyo fields. The fluvio-estuarine facies assemblage is composed of both interfluve and valley-fill deposits, encompassing a variety of depositional environments such as fluvial channel, interfluve paleosol, bay head delta, estuary bay, restricted tidal flat, intertidal channel, and estuary mouth. Deposition in a brackish-water estuarine valley is supported by the presence of a low diversity, opportunistic, impoverished marine ichnofaunal assemblage dominated by infaunal structures, representing an example of a mixed, depauperate Cruziana and Skolithos ichnofacies. Overall distribution of ichnofossils along the estuarine valley was mainly controlled by the salinity gradient, with other parameters, such as oxygenation, substrate and energy, acting at a more local scale. The lower Morrow estuarine system displays the classical tripartite division of wave-dominated estuaries (i.e. seaward-marine sand plug, fine-grained central bay, and sandy landward zone), but tidal action is also recorded. The estuarine valley displays a northwest-southeast trend, draining to the open sea in the southeast. Recognition of valley-fill sandstones in the lower Morrow has implications for reservoir characterization. While the open marine model predicts a "layer-cake" style of facies distribution as a consequence of strandline shoreline progradation, identification of valley-fill sequences points to more compartmentalized reservoirs, due to the heterogeneity created by valley incision and subsequent infill. The open-marine facies assemblage comprises upper, middle, and lower shoreface; offshore transition; offshore; and shelf deposits. In contrast to the estuarine assemblage, open marine ichnofaunas are characterized by a

  7. Trophic structure in the Gulf of Lions marine ecosystem (north-western Mediterranean Sea) and fishing impacts

    NASA Astrophysics Data System (ADS)

    Bănaru, D.; Mellon-Duval, C.; Roos, D.; Bigot, J.-L.; Souplet, A.; Jadaud, A.; Beaubrun, P.; Fromentin, J.-M.

    2013-02-01

    The Gulf of Lions ecosystem was described using the Ecopath mass-balance model to characterise its structure and functioning and to examine the effects of the multispecific fisheries operating in this area. The model is composed of 40 compartments, including 1 group of seabirds, 2 groups of cetaceans, 18 groups of fish, 12 groups of invertebrates, 5 groups of primary producers, detritus and discards. Input data were based on several recurrent scientific surveys, two alternative datasets for fishing data, stock assessment outputs, stomach content analyses and published information. Results showed that the functional groups were organised into five trophic levels with the highest one represented by dolphins, anglerfish, Atlantic bluefin tuna, European hake and European conger. European pilchard and European anchovy dominated in terms of fish biomass and catch. Other fish with high biomass such as Atlantic mackerel and blue whiting were highly important in the food web. Seabirds, dolphins and cuttlefish-squids represented keystone species. Important coupled pelagic-demersal-benthic interactions were described. The 7 different fisheries analysed were operating at mean trophic levels situated between 2.6 for small artisanal boats, and 4.1 for purse seines (> 24 m) targeting large pelagic fish, indicating an intensively exploited ecosystem. Large trawlers (24-40 m) had the highest impact on most of the groups considered; while purse seines (12-24 m) targeting small pelagic fish had the lowest impact. Preliminary results highlighted the importance of data sources for further ecosystem and fisheries analyses and management scenarios.

  8. Law and Marine Science

    ERIC Educational Resources Information Center

    Bockrath, Joseph

    1976-01-01

    The University of Delaware Marine Studies has implemented courses in coastal zone law and policy and maritime law. The courses attempt to integrate the scientist's or engineer's work with public policy formation. The program emphasizes historical and current issues and the economic, cultural, and political forces operating in decision-making…

  9. Marine Biomedicine

    ERIC Educational Resources Information Center

    Bang, Frederik B.

    1977-01-01

    Describes early scientific research involving marine invertebrate pathologic processes that may have led to new insights into human disease. Discussed are inquiries of Metchnikoff, Loeb, and Cantacuzene (immunolgic responses in sea stars, horseshoe crabs, and marine worms, respectively). Describes current research stemming from these early…

  10. Marine Biology

    ERIC Educational Resources Information Center

    Dewees, Christopher M.; Hooper, Jon K.

    1976-01-01

    A variety of informational material for a course in marine biology or oceanology at the secondary level is presented. Among the topics discussed are: food webs and pyramids, planktonic blooms, marine life, plankton nets, food chains, phytoplankton, zooplankton, larval plankton and filter feeders. (BT)

  11. Theory of factors limiting high gradient operation of warm accelerating structures

    SciTech Connect

    Nusinovich, Gregory S.; Antonsen, Thomas M.; Kishek, Rami

    2014-07-25

    This final report summarizes the research performed during the time period from 8/1/2010 to 7/31/2013. It consists of two parts describing our studies in two directions: (a) analysis of factors limiting operation of dielectric-loaded accelerating (DLA) structures where the main problem is the occurrence of multipactor on dielectric surfaces, and (b) studies of effects associated with either RF magnetic or RF electric fields which may cause the RF breakdown in high-gradient metallic accelerating structures. In the studies of DLA structures, at least, two accomplishments should be mentioned: the development of a 3D non-stationary, self-consistent code describing the multipactor phenomena and yielding very good agreement with some experimental data obtained in joint ANL/NRL experiments. In the metallic structures, such phenomena as the heating and melting of micro-particles (metallic dust) by RF electric and magnetic fields in single-shot and rep-rate regimes is analyzed. Also, such processes in micro-protrusions on the structure surfaces as heating and melting due to the field emitted current and the Nottingham effect are thoroughly investigated with the account for space charge of emitted current on the field emission from the tip.

  12. Population structure and phylogeography reveal pathways of colonization by a migratory marine reptile (Chelonia mydas) in the central and eastern Pacific.

    PubMed

    Dutton, Peter H; Jensen, Michael P; Frey, Amy; LaCasella, Erin; Balazs, George H; Zárate, Patricia; Chassin-Noria, Omar; Sarti-Martinez, Adriana Laura; Velez, Elizabeth

    2014-11-01

    Climate, behavior, ecology, and oceanography shape patterns of biodiversity in marine faunas in the absence of obvious geographic barriers. Marine turtles are an example of highly migratory creatures with deep evolutionary lineages and complex life histories that span both terrestrial and marine environments. Previous studies have focused on the deep isolation of evolutionary lineages (>3 mya) through vicariance; however, little attention has been given to the pathways of colonization of the eastern Pacific and the processes that have shaped diversity within the most recent evolutionary time. We sequenced 770 bp of the mtDNA control region to examine the stock structure and phylogeography of 545 green turtles from eight different rookeries in the central and eastern Pacific. We found significant differentiation between the geographically separated nesting populations and identified five distinct stocks (F ST = 0.08-0.44, P < 0.005). Central and eastern Pacific Chelonia mydas form a monophyletic group containing 3 subclades, with Hawaii more closely related to the eastern Pacific than western Pacific populations. The split between sampled central/eastern and western Pacific haplotypes was estimated at around 0.34 mya, suggesting that the Pacific region west of Hawaii has been a more formidable barrier to gene flow in C. mydas than the East Pacific Barrier. Our results suggest that the eastern Pacific was colonized from the western Pacific via the Central North Pacific and that the Revillagigedos Islands provided a stepping-stone for radiation of green turtles from the Hawaiian Archipelago to the eastern Pacific. Our results fit with a broader paradigm that has been described for marine biodiversity, where oceanic islands, such as Hawaii and Revillagigedo, rather than being peripheral evolutionary "graveyards", serve as sources and recipients of diversity and provide a mechanism for further radiation.

  13. Population structure and phylogeography reveal pathways of colonization by a migratory marine reptile (Chelonia mydas) in the central and eastern Pacific

    PubMed Central

    Dutton, Peter H; Jensen, Michael P; Frey, Amy; LaCasella, Erin; Balazs, George H; Zárate, Patricia; Chassin-Noria, Omar; Sarti-Martinez, Adriana Laura; Velez, Elizabeth

    2014-01-01

    Climate, behavior, ecology, and oceanography shape patterns of biodiversity in marine faunas in the absence of obvious geographic barriers. Marine turtles are an example of highly migratory creatures with deep evolutionary lineages and complex life histories that span both terrestrial and marine environments. Previous studies have focused on the deep isolation of evolutionary lineages (>3 mya) through vicariance; however, little attention has been given to the pathways of colonization of the eastern Pacific and the processes that have shaped diversity within the most recent evolutionary time. We sequenced 770 bp of the mtDNA control region to examine the stock structure and phylogeography of 545 green turtles from eight different rookeries in the central and eastern Pacific. We found significant differentiation between the geographically separated nesting populations and identified five distinct stocks (FST = 0.08–0.44, P < 0.005). Central and eastern Pacific Chelonia mydas form a monophyletic group containing 3 subclades, with Hawaii more closely related to the eastern Pacific than western Pacific populations. The split between sampled central/eastern and western Pacific haplotypes was estimated at around 0.34 mya, suggesting that the Pacific region west of Hawaii has been a more formidable barrier to gene flow in C. mydas than the East Pacific Barrier. Our results suggest that the eastern Pacific was colonized from the western Pacific via the Central North Pacific and that the Revillagigedos Islands provided a stepping-stone for radiation of green turtles from the Hawaiian Archipelago to the eastern Pacific. Our results fit with a broader paradigm that has been described for marine biodiversity, where oceanic islands, such as Hawaii and Revillagigedo, rather than being peripheral evolutionary “graveyards”, serve as sources and recipients of diversity and provide a mechanism for further radiation. PMID:25540693

  14. Population structure and phylogeography reveal pathways of colonization by a migratory marine reptile (Chelonia mydas) in the central and eastern Pacific.

    PubMed

    Dutton, Peter H; Jensen, Michael P; Frey, Amy; LaCasella, Erin; Balazs, George H; Zárate, Patricia; Chassin-Noria, Omar; Sarti-Martinez, Adriana Laura; Velez, Elizabeth

    2014-11-01

    Climate, behavior, ecology, and oceanography shape patterns of biodiversity in marine faunas in the absence of obvious geographic barriers. Marine turtles are an example of highly migratory creatures with deep evolutionary lineages and complex life histories that span both terrestrial and marine environments. Previous studies have focused on the deep isolation of evolutionary lineages (>3 mya) through vicariance; however, little attention has been given to the pathways of colonization of the eastern Pacific and the processes that have shaped diversity within the most recent evolutionary time. We sequenced 770 bp of the mtDNA control region to examine the stock structure and phylogeography of 545 green turtles from eight different rookeries in the central and eastern Pacific. We found significant differentiation between the geographically separated nesting populations and identified five distinct stocks (F ST = 0.08-0.44, P < 0.005). Central and eastern Pacific Chelonia mydas form a monophyletic group containing 3 subclades, with Hawaii more closely related to the eastern Pacific than western Pacific populations. The split between sampled central/eastern and western Pacific haplotypes was estimated at around 0.34 mya, suggesting that the Pacific region west of Hawaii has been a more formidable barrier to gene flow in C. mydas than the East Pacific Barrier. Our results suggest that the eastern Pacific was colonized from the western Pacific via the Central North Pacific and that the Revillagigedos Islands provided a stepping-stone for radiation of green turtles from the Hawaiian Archipelago to the eastern Pacific. Our results fit with a broader paradigm that has been described for marine biodiversity, where oceanic islands, such as Hawaii and Revillagigedo, rather than being peripheral evolutionary "graveyards", serve as sources and recipients of diversity and provide a mechanism for further radiation. PMID:25540693

  15. RAD genotyping reveals fine-scale genetic structuring and provides powerful population assignment in a widely distributed marine species, the American lobster (Homarus americanus).

    PubMed

    Benestan, Laura; Gosselin, Thierry; Perrier, Charles; Sainte-Marie, Bernard; Rochette, Rémy; Bernatchez, Louis

    2015-07-01

    Deciphering genetic structure and inferring connectivity in marine species have been challenging due to weak genetic differentiation and limited resolution offered by traditional genotypic methods. The main goal of this study was to assess how a population genomics framework could help delineate the genetic structure of the American lobster (Homarus americanus) throughout much of the species' range and increase the assignment success of individuals to their location of origin. We genotyped 10 156 filtered SNPs using RAD sequencing to delineate genetic structure and perform population assignment for 586 American lobsters collected in 17 locations distributed across a large portion of the species' natural distribution range. Our results revealed the existence of a hierarchical genetic structure, first separating lobsters from the northern and southern part of the range (FCT  = 0.0011; P-value = 0.0002) and then revealing a total of 11 genetically distinguishable populations (mean FST  = 0.00185; CI: 0.0007-0.0021, P-value < 0.0002), providing strong evidence for weak, albeit fine-scale population structuring within each region. A resampling procedure showed that assignment success was highest with a subset of 3000 SNPs having the highest FST . Applying Anderson's (Molecular Ecology Resources, 2010, 10, 701) method to avoid 'high-grading bias', 94.2% and 80.8% of individuals were correctly assigned to their region and location of origin, respectively. Lastly, we showed that assignment success was positively associated with sample size. These results demonstrate that using a large number of SNPs improves fine-scale population structure delineation and population assignment success in a context of weak genetic structure. We discuss the implications of these findings for the conservation and management of highly connected marine species, particularly regarding the geographic scale of demographic independence.

  16. RAD genotyping reveals fine-scale genetic structuring and provides powerful population assignment in a widely distributed marine species, the American lobster (Homarus americanus).

    PubMed

    Benestan, Laura; Gosselin, Thierry; Perrier, Charles; Sainte-Marie, Bernard; Rochette, Rémy; Bernatchez, Louis

    2015-07-01

    Deciphering genetic structure and inferring connectivity in marine species have been challenging due to weak genetic differentiation and limited resolution offered by traditional genotypic methods. The main goal of this study was to assess how a population genomics framework could help delineate the genetic structure of the American lobster (Homarus americanus) throughout much of the species' range and increase the assignment success of individuals to their location of origin. We genotyped 10 156 filtered SNPs using RAD sequencing to delineate genetic structure and perform population assignment for 586 American lobsters collected in 17 locations distributed across a large portion of the species' natural distribution range. Our results revealed the existence of a hierarchical genetic structure, first separating lobsters from the northern and southern part of the range (FCT  = 0.0011; P-value = 0.0002) and then revealing a total of 11 genetically distinguishable populations (mean FST  = 0.00185; CI: 0.0007-0.0021, P-value < 0.0002), providing strong evidence for weak, albeit fine-scale population structuring within each region. A resampling procedure showed that assignment success was highest with a subset of 3000 SNPs having the highest FST . Applying Anderson's (Molecular Ecology Resources, 2010, 10, 701) method to avoid 'high-grading bias', 94.2% and 80.8% of individuals were correctly assigned to their region and location of origin, respectively. Lastly, we showed that assignment success was positively associated with sample size. These results demonstrate that using a large number of SNPs improves fine-scale population structure delineation and population assignment success in a context of weak genetic structure. We discuss the implications of these findings for the conservation and management of highly connected marine species, particularly regarding the geographic scale of demographic independence. PMID:25977167

  17. The nature of operating flight loads and their effect on propulsion system structures

    NASA Technical Reports Server (NTRS)

    Dickenson, K. H.; Martin, R. L.

    1981-01-01

    Past diagnostics studies revealed the primary causes of performance deterioration of high by-pass turbofan engines to be flight loads, erosion, and thermal distortion. The various types of airplane loads that are imposed on the engine throughout the lifetime of an airplane are examined. These include flight loads from gusts and maneuvers and ground loads from takeoff, landing, and taxi conditions. Clarification is made in definitions of the airframer's limit and ultimate design loads and the engine manufacturer's operating design loads. Finally, the influence of these loads on the propulsion system structures is discussed.

  18. Investigation of the geologic and tectonic structures of Bafa Lake and Akbuk Gulf (terrestrial and marine areas) by means of gravity and magnetic methods

    NASA Astrophysics Data System (ADS)

    Edremit, Şüheda; Özel, Erdeniz

    2016-04-01

    clastics units +100 gamma values are interpreted as values observed on the sedimentary rocks. For the marine geologic and tectonic structures, at the total magnetic field measurements mapped weren't quite run across to residual values. Gamma values that are changed between -60 and +400 acquired at the marine magnetic datas with gamma values that are changed between -100 and +300 in lake at the aeromagnetic anomaly map are very close values each other. In the lake, high anomaly datas are caused by islands. Showing between -100 and +100 of gamma values observed in the Akbuk Gulf are interpreted as to see effects of terrestrial geologic units at the environment in the gulf. Also, Akbuk Gulf marine magnetic datas will be collected for the detailed study.

  19. Mariner Mars 1971: Press kit

    NASA Technical Reports Server (NTRS)

    Mittauer, R. T.

    1971-01-01

    The news release describes the 1971 launches of Mariner 8 and 9 which were to be the first attempt by NASA to orbit another planet, Mars. Described are: (1) mission capsule; (2) planetary missions; (3) aiming zones; (4) the spacecraft; (5) scientific experiments to be performed; (6) Atlas Centaur launch vehicle; (7) launch operations; (8) tracking and data system and mission operations; and (9) Mariner Mars 71 team and subcontractors.

  20. Marine04 Marine radiocarbon age calibration, 26 ? 0 ka BP

    SciTech Connect

    Hughen, K; Baille, M; Bard, E; Beck, J; Bertrand, C; Blackwell, P; Buck, C; Burr, G; Cutler, K; Damon, P; Edwards, R; Fairbanks, R; Friedrich, M; Guilderson, T; Kromer, B; McCormac, F; Manning, S; Bronk-Ramsey, C; Reimer, P; Reimer, R; Remmele, S; Southon, J; Stuiver, M; Talamo, S; Taylor, F; der Plicht, J v; Weyhenmeyer, C

    2004-11-01

    New radiocarbon calibration curves, IntCal04 and Marine04, have been constructed and internationally ratified to replace the terrestrial and marine components of IntCal98. The new calibration datasets extend an additional 2000 years, from 0-26 ka cal BP (Before Present, 0 cal BP = AD 1950), and provide much higher resolution, greater precision and more detailed structure than IntCal98. For the Marine04 curve, dendrochronologically dated tree-ring samples, converted with a box-diffusion model to marine mixed-layer ages, cover the period from 0-10.5 ka cal BP. Beyond 10.5 ka cal BP, high-resolution marine data become available from foraminifera in varved sediments and U/Th-dated corals. The marine records are corrected with site-specific {sup 14}C reservoir age information to provide a single global marine mixed-layer calibration from 10.5-26.0 ka cal BP. A substantial enhancement relative to IntCal98 is the introduction of a random walk model, which takes into account the uncertainty in both the calendar age and the radiocarbon age to calculate the underlying calibration curve. The marine datasets and calibration curve for marine samples from the surface mixed layer (Marine04) are discussed here. The tree-ring datasets, sources of uncertainty, and regional offsets are presented in detail in a companion paper by Reimer et al.

  1. The sulfur cycle in the marine atmosphere

    NASA Technical Reports Server (NTRS)

    Toon, Owen B.; Kasting, James F.; Turco, Richard P.; Liu, May S.

    1987-01-01

    The simulation of the sulfur cycle in the marine atmosphere using a one-dimensional photochemical model is described and evaluated. Theoretical uncertainties concerning the operation of the marine sulfur cycle are examined, and measurements of sulfur gases in the marine atmosphere necessary for developing the model are derived. Previous modeling studies are reviewed, and the data from these studies are compared to the model simulations. Recommendations for improving the simulation of the sulfur cycle in the marine atmosphere are discussed.

  2. Using operational and defined fractions to assess soil organic matter stabilization and structure

    NASA Astrophysics Data System (ADS)

    Horwath, W. R.

    2015-12-01

    Studies on soil organic matter (SOM) began with alkaline solvents revealing a dark colored substance that could be isolated under low pH. Further studies revealed fulvic and humic acids and humin fractions leading to theories on functional groups and metal-clay bridging mechanisms. The fate of isotopes in these fractions revealed soil carbon pools with varying turnover rates with half the soil carbon (C) in humin and acid hydrolyzed fractions over 1000 years old. These results are the basis of the three pool conceptual framework used in many biogeochemical models. Theories on the role of functional groups and compound classes further elaborated concepts on physical (aggregates) and chemical mechanisms of C stabilization. With the advance of analytical instrumentation, the operational fractions were further defined to the compound and molecular levels. These studies confirmed the majority of soil C is microbially derived. Our observation that all microbial groups contributed nonselectively to soil C maintenance independent of mineralogy suggests that compound characteristics within integrated structures are more important than the source of individual compounds for stabilizing soil C. In dissolved organic C floccing studies using Near Edge X-ray Fine Structure analysis, we found that aromatic compounds interacted first with Fe, however, the majority of direct bonds to Fe were polysaccharides, reinforcing that an integrative chemical structure rather than direct bonds imparted stability in organo-metal interactions. Using a novel differential scanning calorimeter coupled to an isotope ratio mass spectrometer setup, we confirmed that the presence of clays (independent of clay type) increased the microbial utilization of calcium stabilized high versus low temperature compounds, asserting that higher temperature compounds (i.e., phenolics) are likely less tightly bound by clay minerals. The integration of operational and defined fractions of SOM remains a legitimate

  3. SeaDataNet : Pan-European infrastructure for marine and ocean data management - Project objectives, structure and components

    NASA Astrophysics Data System (ADS)

    Maudire, G.; Maillard, C.; Fichaut, M.; Manzella, G.; Schaap, D. M. A.

    2009-04-01

    SeaDataNet : Pan-European infrastructure for marine and ocean data management Project objectives, structure and components G. Maudire (1), C. Maillard (1), G. Manzella (2), M. Fichaut (1), D.M.A. Schaap (3), E. Iona (4) and the SeaDataNet consortium. (1) IFREMER, Brest, France (Gilbert.Maudire@ifremer.fr), (2) ENEA, La Spezia, Italy, (3) Mariene Informatie Service 'MARIS', Voorburg, The Netherlands, (4) Hellenic Centre for Marine Research-HCMR, Anavyssos, Greece. Since a large part of the earth population lives near the oceans or carries on activities directly or indirectly linked to the seas (fishery and aquaculture, exploitation of sea bottom resources, international shipping, tourism), knowledge of oceans is of primary importance for security and economy. However, observation and monitoring of the oceans remains difficult and expensive even if real improvements have been achieved using research vessels and submersibles, satellites and automatic observatories like buoys, floats and seafloor observatories transmitting directly to the shore using global transmission systems. More than 600 governmental or private organizations are active in observation of seas bordering Europe, but European oceanographic data are fragmented, not always validated and not always easily accessible. That highlights the need of international collaboration to tend toward a comprehensive view of ocean mechanisms, resources and changes. SeaDataNet is an Integrated research Infrastructure Initiative (I3) in European Union Framework Program 6 (2006 - 2011) to provide the data management system adapted both to the fragmented observation systems and to the users need for an integrated access to data, meta-data, products and services. Its major objectives are to: - encourage long-term archiving at national level to secure ocean data taking into account that all the observations made in the variable oceanic environment can never be remade if they are lost; - promote best practices for data

  4. Vicariance and dispersal across an intermittent barrier: population genetic structure of marine animals across the Torres Strait land bridge

    NASA Astrophysics Data System (ADS)

    Mirams, A. G. K.; Treml, E. A.; Shields, J. L.; Liggins, L.; Riginos, C.

    2011-12-01

    Biogeographic barriers, some transitory in duration, are likely to have been important contributing factors to modern marine biodiversity in the Indo-Pacific region. One such barrier was the Torres Strait land bridge between continental Australia and New Guinea that persisted through much of the late Pleistocene and separated Indian and Pacific Ocean taxa. Here, we examine the patterns of mitochondrial DNA diversity for marine animals with present-day distributions spanning the Torres Strait. Specifically, we investigate whether there are concordant signatures across species, consistent with either vicariance or recent colonization from either ocean basin. We survey four species of reef fishes ( Apogon doederleini, Pomacentrus coelestis, Dascyllus trimaculatus, and Acanthurus triostegus) for mtDNA cytochrome oxidase 1 and control region variation and contrast these results to previous mtDNA studies in diverse marine animals with similar distributions. We find substantial genetic partitioning (estimated from F-statistics and coalescent approaches) between Indian and Pacific Ocean populations for many species, consistent with regional persistence through the late Pleistocene in both ocean basins. The species-specific estimates of genetic divergence, however, vary greatly and for reef fishes we estimate substantially different divergence times among species. It is likely that Indian and Pacific Ocean populations have been isolated for multiple glacial cycles for some species, whereas for other species genetic connections have been more recent. Regional estimates of genetic diversity and directionality of gene flow also vary among species. Thus, there is no apparent consistency among historical patterns across the Torres Strait for these co-distributed marine animals.

  5. Diversity, community structure, and bioremediation potential of mercury-resistant marine bacteria of estuarine and coastal environments of Odisha, India.

    PubMed

    Dash, Hirak R; Das, Surajit

    2016-04-01

    Both point and non-point sources increase the pollution status of mercury and increase the population of mercury-resistant marine bacteria (MRMB). They can be targeted as the indicator organism to access marine mercury pollution, besides utilization in bioremediation. Thus, sediment and water samples were collected for 2 years (2010-2012) along Odisha coast of Bay of Bengal, India. Mercury content of the study sites varied from 0.47 to 0.99 ppb irrespective of the seasons of sampling. A strong positive correlation was observed between mercury content and MRMB population (P < 0.05) suggesting the utilization of these bacteria to assess the level of mercury pollution in the marine environment. Seventy-eight percent of the MRMB isolates were under the phylum Firmicutes, and 36 and 31% of them could resist mercury by mer operon-mediated volatilization and mercury biosorption, respectively. In addition, most of the isolates could resist a number of antibiotics and toxic metals. All the MRMB isolates possess the potential of growth and survival at cardinal pH (4-8), temperature (25-37 °C), and salinity (5-35 psu). Enterobacteria repetitive intergenic consensus (ERIC) and repetitive element palindromic PCR (REP-PCR) produced fingerprints corroborating the results of 16S rRNA gene sequencing. Fourier transform infrared (FTIR) spectral analysis also revealed strain-level speciation and phylogenetic relationships.

  6. Diversity, community structure, and bioremediation potential of mercury-resistant marine bacteria of estuarine and coastal environments of Odisha, India.

    PubMed

    Dash, Hirak R; Das, Surajit

    2016-04-01

    Both point and non-point sources increase the pollution status of mercury and increase the population of mercury-resistant marine bacteria (MRMB). They can be targeted as the indicator organism to access marine mercury pollution, besides utilization in bioremediation. Thus, sediment and water samples were collected for 2 years (2010-2012) along Odisha coast of Bay of Bengal, India. Mercury content of the study sites varied from 0.47 to 0.99 ppb irrespective of the seasons of sampling. A strong positive correlation was observed between mercury content and MRMB population (P < 0.05) suggesting the utilization of these bacteria to assess the level of mercury pollution in the marine environment. Seventy-eight percent of the MRMB isolates were under the phylum Firmicutes, and 36 and 31% of them could resist mercury by mer operon-mediated volatilization and mercury biosorption, respectively. In addition, most of the isolates could resist a number of antibiotics and toxic metals. All the MRMB isolates possess the potential of growth and survival at cardinal pH (4-8), temperature (25-37 °C), and salinity (5-35 psu). Enterobacteria repetitive intergenic consensus (ERIC) and repetitive element palindromic PCR (REP-PCR) produced fingerprints corroborating the results of 16S rRNA gene sequencing. Fourier transform infrared (FTIR) spectral analysis also revealed strain-level speciation and phylogenetic relationships. PMID:26686519

  7. Mariner 9 navigation

    NASA Technical Reports Server (NTRS)

    Neil, W. J.; Jordan, J. F.; Zielenbach, J. W.; Wong, S. K.; Mitchell, R. T.; Webb, W. A.; Koskela, P. E.

    1973-01-01

    A final, comprehensive description of the navigation of Mariner 9-the first U.S. spacecraft to orbit another planet is provided. The Mariner 9 navigation function included not only precision flight path control but also pointing of the spacecraft's scientific instruments mounted on a two degree of freedom scan platform. To the extent appropriate, each section describes the perflight analyses on which the operational strategies and performance predictions were based. Inflight results are then discussed and compared with the preflight predictions. Postflight analyses, which were primarily concerned with developing a thorough understanding of unexpected in-flight results, are also presented.

  8. Operational performance, biomass and microbial community structure: impacts of backwashing on drinking water biofilter.

    PubMed

    Liao, Xiaobin; Chen, Chao; Zhang, Jingxu; Dai, Yu; Zhang, Xiaojian; Xie, Shuguang

    2015-01-01

    Biofiltration has been widely used to reduce organic matter and control the formation of disinfection by-products in drinking water. Backwashing might affect the biofilters' performance and the attached microbiota on filter medium. In this study, the impacts of backwashing on the removal of dissolved organic carbon (DOC), dissolved organic nitrogen (DON) and N-nitrosamine precursors by a pilot-scale biological activated carbon (BAC) filtration system were investigated. The impacts of backwashing on biomass and microbial community structure of BAC biofilm were also investigated. Phospholipid fatty acid (PLFA) analysis showed that backwashing reduced nearly half of the attached biomass on granular activated carbon (GAC) particles, followed by a recovery to the pre-backwashing biomass concentration in 2 days after backwashing. Backwashing was found to transitionally improve the removal of DOC, DON and N-nitrosamine precursors. MiSeq sequencing analysis revealed that backwashing had a strong impact on the bacterial diversity and community structure of BAC biofilm, but they could gradually recover with the operating time after backwashing. Phylum Proteobacteria was the largest bacterial group in BAC biofilm. Microorganisms from genera Bradyrhizobium, Hyphomicrobium, Microcystis and Sphingobium might contribute to the effective removal of nitrogenous organic compounds by drinking water biofilter. This work could add some new insights towards the operation of drinking water biofilters and the biological removal of organic matter. PMID:25087501

  9. Influence analysis of structural parameters and operating parameters on electromagnetic properties of HTS linear induction motor

    NASA Astrophysics Data System (ADS)

    Fang, J.; Sheng, L.; Li, D.; Zhao, J.; Li, Sh.; Qin, W.; Fan, Y.; Zheng, Q. L.; Zhang, W.

    A novel High Temperature Superconductor Linear Induction Motor (HTS LIM) is researched in this paper. Since the critical current and the electromagnetic force of the motor are determined mainly by the primary slot leakage flux, the main magnetic flux and eddy current respectively, in order to research the influence of structural parameters and operating parameters on electromagnetic properties of HTS LIM, the motor was analyzed by 2D transient Finite Element Method (FEM). The properties of the motor, such as the maximum slot leakage flux density, motor thrust, motor vertical force and critical current are analyzed with different structural parameters and operating parameters. In addition, an experimental investigation was carried out on prototype HTS motor. Electrical parameters were deduced from these tests and also compared with the analysis results from FEM. AC losses of one HTS coil in the motor were measured and AC losses of all HTS coils in HTS LIM were estimated. The results in this paper could provide reference for the design and research on the HTS LIM.

  10. Operational performance, biomass and microbial community structure: impacts of backwashing on drinking water biofilter.

    PubMed

    Liao, Xiaobin; Chen, Chao; Zhang, Jingxu; Dai, Yu; Zhang, Xiaojian; Xie, Shuguang

    2015-01-01

    Biofiltration has been widely used to reduce organic matter and control the formation of disinfection by-products in drinking water. Backwashing might affect the biofilters' performance and the attached microbiota on filter medium. In this study, the impacts of backwashing on the removal of dissolved organic carbon (DOC), dissolved organic nitrogen (DON) and N-nitrosamine precursors by a pilot-scale biological activated carbon (BAC) filtration system were investigated. The impacts of backwashing on biomass and microbial community structure of BAC biofilm were also investigated. Phospholipid fatty acid (PLFA) analysis showed that backwashing reduced nearly half of the attached biomass on granular activated carbon (GAC) particles, followed by a recovery to the pre-backwashing biomass concentration in 2 days after backwashing. Backwashing was found to transitionally improve the removal of DOC, DON and N-nitrosamine precursors. MiSeq sequencing analysis revealed that backwashing had a strong impact on the bacterial diversity and community structure of BAC biofilm, but they could gradually recover with the operating time after backwashing. Phylum Proteobacteria was the largest bacterial group in BAC biofilm. Microorganisms from genera Bradyrhizobium, Hyphomicrobium, Microcystis and Sphingobium might contribute to the effective removal of nitrogenous organic compounds by drinking water biofilter. This work could add some new insights towards the operation of drinking water biofilters and the biological removal of organic matter.

  11. Structural health and prognostics management for the enhancement of offshore wind turbine operations and maintenance strategies

    DOE PAGES

    Griffith, D. Todd; Yoder, Nathanael C.; Resor, Brian; White, Jonathan; Paquette, Joshua

    2013-09-19

    Offshore wind turbines are an attractive source for clean and renewable energy for reasons including their proximity to population centers and higher capacity factors. One obstacle to the more widespread installation of offshore wind turbines in the USA, however, is that recent projections of offshore operations and maintenance costs vary from two to five times the land-based costs. One way in which these costs could be reduced is through use of a structural health and prognostics management (SHPM) system as part of a condition-based maintenance paradigm with smart loads management. Our paper contributes to the development of such strategies bymore » developing an initial roadmap for SHPM, with application to the blades. One of the key elements of the approach is a multiscale simulation approach developed to identify how the underlying physics of the system are affected by the presence of damage and how these changes manifest themselves in the operational response of a full turbine. A case study of a trailing edge disbond is analysed to demonstrate the multiscale sensitivity of damage approach and to show the potential life extension and increased energy capture that can be achieved using simple changes in the overall turbine control and loads management strategy. Finally, the integration of health monitoring information, economic considerations such as repair costs versus state of health, and a smart loads management methodology provides an initial roadmap for reducing operations and maintenance costs for offshore wind farms while increasing turbine availability and overall profit.« less

  12. Structural health and prognostics management for the enhancement of offshore wind turbine operations and maintenance strategies

    SciTech Connect

    Griffith, D. Todd; Yoder, Nathanael C.; Resor, Brian; White, Jonathan; Paquette, Joshua

    2013-09-19

    Offshore wind turbines are an attractive source for clean and renewable energy for reasons including their proximity to population centers and higher capacity factors. One obstacle to the more widespread installation of offshore wind turbines in the USA, however, is that recent projections of offshore operations and maintenance costs vary from two to five times the land-based costs. One way in which these costs could be reduced is through use of a structural health and prognostics management (SHPM) system as part of a condition-based maintenance paradigm with smart loads management. Our paper contributes to the development of such strategies by developing an initial roadmap for SHPM, with application to the blades. One of the key elements of the approach is a multiscale simulation approach developed to identify how the underlying physics of the system are affected by the presence of damage and how these changes manifest themselves in the operational response of a full turbine. A case study of a trailing edge disbond is analysed to demonstrate the multiscale sensitivity of damage approach and to show the potential life extension and increased energy capture that can be achieved using simple changes in the overall turbine control and loads management strategy. Finally, the integration of health monitoring information, economic considerations such as repair costs versus state of health, and a smart loads management methodology provides an initial roadmap for reducing operations and maintenance costs for offshore wind farms while increasing turbine availability and overall profit.

  13. Impact of inocula and operating conditions on the microbial community structure of two anammox reactors.

    PubMed

    Costa, Maria Cristina Monteiro S; Carvalho, Luciana; Leal, Cintia Dutra; Dias, Marcela França; Martins, Karoline L; Garcia, Guilherme Brugger; Mancuelo, Isabella Daldegan; Hipólito, Thais; Conell, Erika F Abreu Mac; Okada, Dagoberto; Etchebehere, Claudia; Chernicharo, Carlos Augusto L; Araujo, Juliana Calabria

    2014-08-01

    The microbial community structure of the biomass selected in two distinctly inoculated anaerobic oxidation of ammonium (anammox) reactors was investigated and compared with the help of data obtained from 454-pyrosequencing analyses. The anammox reactors were operated for 550 days and seeded with different sludges: sediment from a constructed wetland (reactor I) and biomass from an aerated lagoon part of the oil-refinery wastewater treatment plant (reactor II). The anammox diversity in the inocula was evaluated by 16S rRNA gene-cloning analysis. The diversity of anammox bacteria was greater in the sludge from the oil-refinery (three of the five known genera of anammox were detected) than in the wetland sludge, in which only Candidatus Brocadia was observed. Pyrosequencing analysis demonstrated that the community enriched in both reactors had differing compositions despite the nearly similar operational conditions applied. The dominant phyla detected in both reactors were Proteobacteria, Chloroflexi, Planctomycetes, and Acidobacteria. The phylum Bacteroidetes, which is frequently observed in anammox reactors, was not detected. However, Acidobacteria and GN04 phyla were observed for the first time, suggesting their importance for this process. Our results suggest that, under similar operational conditions, anammox populations (Ca. Brocadia sinica and Ca. Brocadia sp. 40) were selected in both reactors despite the differences between the two initial inocula. Taken together, these results indicated that the type of inoculum and the culture conditions are key determinants of the general microbial composition of the biomass produced in the reactors. Operational conditions alone might play an important role in anammox selection. PMID:24956774

  14. Marine Multichannel Seismology Workshop

    NASA Astrophysics Data System (ADS)

    Detrick, Bob

    1984-04-01

    The multichannel seismic (MCS) reflection technique, developed by the oil industry for petroleum exploration in sedimentary basins, has proven to be a powerful tool for imaging subsurface geology in a wide variety of tectonic settings at a scale suitable for detailed investigations of geological structures and processes. In the ocean basins, MCS studies have provided new insight into the tectonic history of rifted and convergent continental margins, the structure of the oceanic crust and midocean ridges, and the sedimentation history and paleoceanography of deep ocean basins. MCS techniques have thus developed into an important tool for marine geological and geophysical research.The National Science Foundation recently sponsored a Workshop on the Future of Academic Marine Multichannel Seismology in the United States, held in Boulder, Colo., on March 19-20, 1984, to review the current state of marine academic MCS in the United States and to make recommendations on the facilities and funding required to meet future scientific needs. The workshop, which was convened by Brian T.R. Lewis of the University of Washington, included 19 scientists representing the major U.S. oceanographic institutions with interests in marine seismic work. This article summarizes the major recommendations developed at this workshop, which have been included in a more comprehensive report entitled ‘A National Plan for Marine Multichannel Seismology,’ which has been submitted to the National Science Foundation for future publication.

  15. Operating manual for the digital data-collection system for flow-control structures

    USGS Publications Warehouse

    Rorabaugh, J.I.; Rapp, W.L.

    1986-01-01

    This manual was written to help the user operate and maintain the digital data collection system for flow control structures. The system is used to measure daily discharge through river control dams. These dams commonly have tainter gates which are raised and lowered to keep the upper pool level relatively constant as the river flow changes. In order to measure the flow through such a structure, the positions of the tainter gates and the headwater and tailwater elevations must be known. From these data, the flow through the structure can be calculated. A typical digital data collection system is shown. Digitizing devices are mounted on the hoisting mechanism of each gate, as well as at the headwater and tailwater gages. Data from these digitizers are then routed by electrical cables to a central console where they are displayed and recorded on paper tape. If the dam has locks, a pressure-sensitive switch located in the lock activates a counter in the console which keeps track of the number of times the lock is drained and filled. (USGS)

  16. Modal shape identification of large structure exposed to wind excitation by operational modal analysis technique

    NASA Astrophysics Data System (ADS)

    De Vivo, A.; Brutti, C.; Leofanti, J. L.

    2013-08-01

    Research efforts during recent decades qualify Operational Modal Analysis (OMA) as an interesting tool that is able to identify the modal characteristic parameters of structures excited randomly by environmental loads, eliminating the problem of measuring the external exciting forces. In this paper, an existing OMA technique, the Natural Excitation Technique (NExT) was studied and implemented in order to achieve, from the wind force, the modal parameters of Vega Launcher, the new European launcher vehicle for small and medium satellites. Following a brief summary of the fundamental equations of the method, the modal parameters of Vega are calculated using the OMA technique; the results are then compared with those achieved using a traditional Experimental Modal Analysis under excitation induced by shakers. The comparison shows there is a very good agreement between the results obtained by the two different methods, OMA and the traditional experimental analysis, proving that OMA is a reliable tool to analyse the dynamic behaviour of large structures. Finally, this approach can be used for any type of large structure in civil and mechanical fields and the technique appears to be very promising for further applications.

  17. 46 CFR 185.206 - Written report of marine casualty.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 46 Shipping 7 2010-10-01 2010-10-01 false Written report of marine casualty. 185.206 Section 185... 100 GROSS TONS) OPERATIONS Marine Casualties and Voyage Records § 185.206 Written report of marine... of any marine casualty. This written report is in addition to the immediate notice required by...

  18. The Bolivar Channel Ecosystem of the Galapagos Marine Reserve: Energy flow structure and role of keystone groups

    NASA Astrophysics Data System (ADS)

    Ruiz, Diego J.; Wolff, Matthias

    2011-08-01

    The Bolivar Channel Ecosystem (BCE) is among the most productive zones in the Galapagos Marine Reserve (GMR). It is exposed to relatively cool, nutrient-rich waters of the Cromwell current, which are brought to the photic zone through topographic upwelling. The BCE is characterized by a heterogeneous rocky reef habitat covered by dense algae beds and inhabited by numerous invertebrate and fish species, which represent the food for higher predators including seals and sharks and exploited fish species. In addition, plankton and detritus based food chains channel large amounts of energy through the complex food web. Important emblematic species of the Galapagos archipelagos reside in this area such as the flightless cormorant, the Galapagos penguin and the marine iguanas. A trophic model of BCE was constructed for the habitats < 30 m depth that fringe the west coast of Isabela and east coast of Fernandina islands covering 14% of the total BCE area (44 km 2). The model integrates data sets from sub tidal ecological monitoring and marine vertebrate population monitoring (2004 to 2008) programs of the Charles Darwin Foundation and consists of 30 compartments, which are trophically linked through a diet matrix. Results reveal that the BCE is a large system in terms of flows (38 695 t km - 2 yr - 1 ) comparable to Peruvian Bay Systems of the Humboldt upwelling system. A very large proportion of energy flows from the primary producers (phytoplankton and macro-algae) to the second level and to the detritus pool. Catches are high (54.3 t km - 2 yr - 1 ) and are mainly derived from the second and third trophic levels (mean TL of catch = 2.45) making the fisheries gross efficiency high (0.3%). The system's degree of development seems rather low as indicated by a P/R ratio of 4.19, a low ascendency (37.4%) and a very low Finn's cycling index (1.29%). This is explained by the system's exposure to irregular changes in oceanographic conditions as related to the EL Niño Southern

  19. Structure revision and cytotoxic activity of marinamide and its methyl ester, novel alkaloids produced by co-cultures of two marine-derived mangrove endophytic fungi.

    PubMed

    Zhu, Feng; Chen, Guangying; Wu, Jingshu; Pan, Jiahui

    2013-01-01

    Marinamide (1) and its methyl ester (2) have been previously reported as pyrrolyl 1-isoquinolone alkaloids, which were produced by co-cultures of two marine-derived mangrove endophytic fungi from the South China Sea coast. Recrystallisation of methyl marinamide (2) from pyridine forms the known pesticide, quinolactacide (3). Treatment of 3 with methyl iodide to afford N-methyl quinolactacide (4) was identified by X-ray crystallography. Thus, the structures of 1 and 2 were revised from the previously reported pyrrolyl 1-isoquinolone structures to pyrrolyl 4-quinolone analogues. In the MTT assays, both 1 and 2 exhibited potent cytotoxic activity against HepG2, 95-D, MGC832 and HeLa tumour cell lines.

  20. Effect of Operating Temperature on Structure Properties of TICX Nanoparticle Coating Applied by Pacvd

    NASA Astrophysics Data System (ADS)

    Shanaghi, Ali; Sabour Rouhaghdam, Ali Reza; Ahangarani, Shahrokh; Moradi, Hadi; Mohammadi, Ali

    Titanium carbide (TiC) is a widely used hard coating to improve the wear resistance and lifetime of tools because of its outstanding properties such as high melting point, high hardness, corrosion resistance and abrasion resistance. These properties were drastically improved by using nanotechnology. So in this project, TiCx was applied on hot-working die steel (H11) by Plasma CVD (PACVD). The effect of operating temperatures on TiCx structure properties have been studies by typical and advanced analyses methods such as SEM, XRD, FTIR and Raman. The best properties of TiCx nanoparticle, such as nanostructure, mechanical properties and chemical properties, were obtained at 480 °C.

  1. Does model structure limit the use of satellite data as hydrologic forcing for distributed operational models?

    NASA Astrophysics Data System (ADS)

    Bowman, A. L.; Franz, K.; Hogue, T. S.

    2015-12-01

    We are investigating the implications for use of satellite data in operational streamflow prediction. Specifically, the consequence of potential hydrologic model structure deficiencies on the ability to achieve improved forecast accuracy through the use of satellite data. We want to understand why advanced data do not lead to improved streamflow simulations by exploring how various fluxes and states differ among models of increasing complexity. In a series of prior studies, we investigated the use of a daily satellite-derived potential evapotranspiration (PET) estimate as input to the National Weather Service (NWS) streamflow forecast models for watersheds in the Upper Mississippi and Red river basins. Although the spatial PET product appears to represent the day-to-day variability in PET more realistically than current climatological methods used by the NWS, the impact of the satellite data on streamflow simulations results in slightly poorer model efficiency overall. Analysis of the model states indicates the model progresses differently between simulations with baseline PET and the satellite-derived PET input, though variation in streamflow simulations overall is negligible. For instance, the upper zone states, responsible for the high flows of a hydrograph, show a profound difference, while simulation of the peak flows tend to show little variation in the timing and magnitude. Using the spatial PET input, the lower zone states show improvement with simulating the recession limb and baseflow portion of the hydrograph. We anticipate that through a better understanding of the relationship between model structure, model states, and simulated streamflow we will be able to diagnose why simulations of discharge from the forecast model have failed to improve when provided seemingly more representative input data. Identifying model limitations are critical to demonstrating the full benefit of a satellite data for operational use.

  2. Changes of the porous structure of activated carbons applied in a filter bed pilot operation.

    PubMed

    Gauden, P A; Szmechtig-Gauden, E; Rychlicki, G; Duber, S; Garbacz, J K; Buczkowski, R

    2006-03-15

    The paper investigates the changes in porosity (i.e., in the accessible adsorption capacity of carbonaceous adsorbents for pollutants during filter bed maturation) of three activated carbons applied in a filter bed pilot operation. The results of this investigation may help to reduce operating costs, increase granular activated carbon bed life, maximize the useful life of biofilters, and understand the mechanism of water purification by carbon adsorbents. The analysis of the pore structure was limited to the first year of service of the beds, since this was when the largest decrease in the available pore capacity occurred. Low-temperature nitrogen adsorption isotherms were used to evaluate the structural parameters and pore size distributions (PSDs) of carbon samples (virgin (reference) and mature adsorbents for different periods of water treatment) on the basis of the Nguyen and Do (ND) method and density functional theory (DFT). These results were compared with small-angle X-ray scattering (SAXS) investigations (PSDs calculated by Glatter's indirect transformation method (ITP)). The results show that in general, the ND and ITP methods lead to almost the same qualitative distribution curve behavior. Moreover, the enthalpy of immersion in water, mercury porosimetry, densities (true and apparent), and the analysis of ash are reported and compared to explain the decrease in adsorptive capacity of the carbons investigated. On the other hand, the efficacy of TOC (total organic carbon, i.e., a quantity describing the complex matrix of organic material present in natural waters) removal and the bacteria count were analyzed to explain the role of adsorption in the elimination of contaminants from water. Finally, a mechanism of organic matter removal was suggested on the basis of the above-mentioned experimental data and compared with mechanisms reported by other authors. PMID:16198363

  3. Marine natural products.

    PubMed

    Blunt, John W; Copp, Brent R; Keyzers, Robert A; Munro, Murray H G; Prinsep, Michèle R

    2015-02-01

    This review covers the literature published in 2013 for marine natural products (MNPs), with 982 citations (644 for the period January to December 2013) referring to compounds isolated from marine microorganisms and phytoplankton, green, brown and red algae, sponges, cnidarians, bryozoans, molluscs, tunicates, echinoderms, mangroves and other intertidal plants and microorganisms. The emphasis is on new compounds (1163 for 2013), together with the relevant biological activities, source organisms and country of origin. Reviews, biosynthetic studies, first syntheses, and syntheses that lead to the revision of structures or stereochemistries, have been included.

  4. Marine natural products.

    PubMed

    Blunt, John W; Copp, Brent R; Keyzers, Robert A; Munro, Murray H G; Prinsep, Michèle R

    2016-03-01

    This review covers the literature published in 2014 for marine natural products (MNPs), with 1116 citations (753 for the period January to December 2014) referring to compounds isolated from marine microorganisms and phytoplankton, green, brown and red algae, sponges, cnidarians, bryozoans, molluscs, tunicates, echinoderms, mangroves and other intertidal plants and microorganisms. The emphasis is on new compounds (1378 in 456 papers for 2014), together with the relevant biological activities, source organisms and country of origin. Reviews, biosynthetic studies, first syntheses, and syntheses that lead to the revision of structures or stereochemistries, have been included.

  5. Marine natural products.

    PubMed

    Blunt, John W; Copp, Brent R; Keyzers, Robert A; Munro, Murray H G; Prinsep, Michèle R

    2014-01-17

    This review covers the literature published in 2012 for marine natural products, with 1035 citations (673 for the period January to December 2012) referring to compounds isolated from marine microorganisms and phytoplankton, green, brown and red algae, sponges, cnidarians, bryozoans, molluscs, tunicates, echinoderms, mangroves and other intertidal plants and microorganisms. The emphasis is on new compounds (1241 for 2012), together with the relevant biological activities, source organisms and country of origin. Biosynthetic studies, first syntheses, and syntheses that lead to the revision of structures or stereochemistries, have been included. PMID:24389707

  6. Marine natural products.

    PubMed

    Blunt, John W; Copp, Brent R; Keyzers, Robert A; Munro, Murray H G; Prinsep, Michèle R

    2015-02-01

    This review covers the literature published in 2013 for marine natural products (MNPs), with 982 citations (644 for the period January to December 2013) referring to compounds isolated from marine microorganisms and phytoplankton, green, brown and red algae, sponges, cnidarians, bryozoans, molluscs, tunicates, echinoderms, mangroves and other intertidal plants and microorganisms. The emphasis is on new compounds (1163 for 2013), together with the relevant biological activities, source organisms and country of origin. Reviews, biosynthetic studies, first syntheses, and syntheses that lead to the revision of structures or stereochemistries, have been included. PMID:25620233

  7. Marine natural products.

    PubMed

    Blunt, John W; Copp, Brent R; Keyzers, Robert A; Munro, Murray H G; Prinsep, Michèle R

    2016-03-01

    This review covers the literature published in 2014 for marine natural products (MNPs), with 1116 citations (753 for the period January to December 2014) referring to compounds isolated from marine microorganisms and phytoplankton, green, brown and red algae, sponges, cnidarians, bryozoans, molluscs, tunicates, echinoderms, mangroves and other intertidal plants and microorganisms. The emphasis is on new compounds (1378 in 456 papers for 2014), together with the relevant biological activities, source organisms and country of origin. Reviews, biosynthetic studies, first syntheses, and syntheses that lead to the revision of structures or stereochemistries, have been included. PMID:26837534

  8. Marine Optical Characterizations

    NASA Technical Reports Server (NTRS)

    Clark, Dennis K.

    1996-01-01

    The team's major emphasis during this reporting period has been focused on the completion of the operational versions of the Marine Optical Buoys (MOBY's). Other work areas consisted of designing and testing bio-optical instrumentation, evaluating several of the SeaWiFS bio-optical protocols, processing data collected during field experiments, and reprocessing several of the Marine Optical Characteristics Experiment (MOCE) 2 and 3 bio-optical data sets. The team conducted one trip to the operations site in Honolulu, Hawaii, making necessary preparations for future field experiments. Part of the team also traveled to Moss Landing Marine Laboratories, Salinas, CA, and to American Holographic Co. Fitchburg MA, to assist with the fabrication of the next generation Marine Optical Buoys. Technical memoranda are being written to address the remote sensing reflectance, and instrument self-shading protocols. During the Ocean Color 96 meeting discussions with the Spanish on acquiring research vessel support during the MODIS validation period were conducted. A proposal will be generated towards this purpose for an experiment to be conducted off the North African coast during the summer of 1999.

  9. Enabling Propulsion Materials (EPM) Structural Component Successfully Tested Under Pseudo-Operating Conditions

    NASA Technical Reports Server (NTRS)

    Bartolotta, Paul A.

    1997-01-01

    A fabrication feasibility demonstration component for the Enabling Propulsion Materials (EPM) program was evaluated under prototypical engine loading conditions at the Structural Benchmark Test Facility at the NASA Lewis Research Center. The purpose for this test was to verify EPM casting, joining, coating, and life-prediction methods. Electron beam welding techniques developed in the EPM program were used to join two large superalloy cast sections of an exhaust nozzle flap to fabricate the demonstration component. After the joints were inspected, the component was coated with an oxidation-resistant barrier coating and was sent to Lewis for testing. The special test fixture shown in the photo (the Structural Benchmark Test Facility) was designed and built at Lewis to produce a biaxial bending condition similar to the loading condition this part would encounter during engine operation. Several finite element analyses were conducted to validate the mechanical test method. A floating furnace was then designed to provide prototypical thermal profiles in the component. An isothermal low-cycle fatigue test was used to evaluate the component at a cyclic load of 13 kN (maximum) to 1 kN (minimum) at a frequency of 1 Hz. Component failure was defined as a 30-percent increase in the component's compliance. On the basis of this definition, the low-cycle fatigue life of this component would be 35,000 cycles.

  10. Variable frequency heavy-ion linac, RILAC I. Design, construction and operation of its accelerating structure

    NASA Astrophysics Data System (ADS)

    Odera, Masatoshi; Chiba, Yoshiaki; Tonuma, Tadao; Hemmi, Masatake; Miyazawa, Yoshitoshi; Inoue, Toshihiko; Kambara, Tadashi; Kase, Masayuki; Kubo, Toshiyuki; Yoshida, Fusako

    1984-11-01

    A variable frequency linear accelerator at RIKEN (IPCR), which is named RILAC, is designed to accelerate ions of almost every element in the periodic table. In this report, the design, construction and performance of the resonator cavities of this linac are described. A new accelerating structure was developed for the variable frequency scheme. The principal aim of the development was to obtain a configuration within the cavity to keep a uniform voltage distribution along the accelerating axis over the wide range of resonant frequencies required. The final form adopted is a coaxial quarter-wave type resonator with a race-track-like cross section for its coaxial inner and outer conductors. It has a movable shorting device as a frequency tuner and its open end is enlarged and loaded with drift tubes, connected to the inner and outer conductors alternatingly. The structure can maintain the required uniformity of the accelerating voltage within 10% in spite of resonant frequency tuning between 17 and 45 MHz. A relatively modest accelerating gradient was chosen so that cw operation could be realized. The RILAC is composed of six such cavities which are independently excited and it succeeded in the acceleration of a beam through all the cavities in 1981.

  11. 1H, 13C and 15N resonance assignments and secondary structure analysis of CmPI-II, a serine protease inhibitor isolated from marine snail Cenchritis muricatus.

    PubMed

    Cabrera-Muñoz, Aymara; Rojas, Laritza; Alonso-del-Rivero Antigua, Maday; Pires, José Ricardo

    2016-04-01

    A protease inhibitor (CmPI-II) (UNIPROT: IPK2_CENMR) from the marine mollusc Cenchritis muricatus, has been isolated and characterized. It is the first member of a new group (group 3) of non-classical Kazal-type inhibitors. CmPI-II is a tight-binding inhibitor of serine proteases: trypsin, human neutrophil elastase (HNE), subtilisin A and pancreatic elastase. This specificity is exceptional in the members of Kazal-type inhibitor family. Several models of three-dimensional structure of CmPI-II have been constructed by homology with other inhibitors of the family but its structure has not yet been solved experimentally. Here we report the (1)H, (15)N and (13)C chemical shift assignments of CmPI-II as basis for NMR structure determination and interaction studies. Secondary structure analyses deduced from the NMR chemical shift data have identified three β-strands β1: residues 14-19, β2: 23-35 and β3: 43-45 and one helix α1: 28-37 arranged in the sequential order β1-β2-α1-β3. These secondary structure elements suggest that CmPI-II adopts the typical scaffold of a Kazal-type inhibitor. PMID:26547437

  12. Earthquake-induced soft-sediment deformation structures in Upper Jurassic open-marine microbialites (Neuquén Basin, Argentina)

    NASA Astrophysics Data System (ADS)

    Martín-Chivelet, Javier; Palma, Ricardo M.; López-Gómez, José; Kietzmann, Diego A.

    2011-04-01

    Penecontemporaneous decimetre-scale soft-sediment deformation structures are reported from the basal part of the Upper Jurassic-Lower Cretaceous Vaca Muerta Formation, in the Malargüe-Las Leñas area of the back-arc Neuquén Basin (Mendoza Province, Central Andes). The deformed interval (Amarillas bed) is only 0.3 to 0.9 m thick but occurs in a wide area, larger than 1500 km 2. Its age, determined by ammonite biostratigraphy, is Early Tithonian. The soft-sediment deformation structures were generated in finely laminated, partially consolidated, organic-rich, carbonate microbialites that were deposited in open-marine, poorly oxygenated settings, apparently devoid of any significant slope. Those structures include boudins of different sizes and complexity, a variety of folds, normal (listric) dm-scale faults, sub-horizontal detachment surfaces and other features, which are part of several larger-scale, complex slump structures. Deformation was dominantly plastic but near to the ductile-brittle field transition. On the basis of the observed soft-deformation structures, their geographic distribution, their lateral homogeneity, and the geodynamic framework of the basin in which it was generated, the Amarillas bed can be tentatively attributed to a large, intermediate-depth earthquake that occurred within the plate that subducted beneath the Andean continental margin and the Neuquén back-arc basin.

  13. Progressive colonization and restricted gene flow shape island-dependent population structure in Galápagos marine iguanas (Amblyrhynchus cristatus)

    PubMed Central

    2009-01-01

    Background Marine iguanas (Amblyrhynchus cristatus) inhabit the coastlines of large and small islands throughout the Galápagos archipelago, providing a rich system to study the spatial and temporal factors influencing the phylogeographic distribution and population structure of a species. Here, we analyze the microevolution of marine iguanas using the complete mitochondrial control region (CR) as well as 13 microsatellite loci representing more than 1200 individuals from 13 islands. Results CR data show that marine iguanas occupy three general clades: one that is widely distributed across the northern archipelago, and likely spread from east to west by way of the South Equatorial current, a second that is found mostly on the older eastern and central islands, and a third that is limited to the younger northern and western islands. Generally, the CR haplotype distribution pattern supports the colonization of the archipelago from the older, eastern islands to the younger, western islands. However, there are also signatures of recurrent, historical gene flow between islands after population establishment. Bayesian cluster analysis of microsatellite genotypes indicates the existence of twenty distinct genetic clusters generally following a one-cluster-per-island pattern. However, two well-differentiated clusters were found on the easternmost island of San Cristóbal, while nine distinct and highly intermixed clusters were found on youngest, westernmost islands of Isabela and Fernandina. High mtDNA and microsatellite genetic diversity were observed for populations on Isabela and Fernandina that may be the result of a recent population expansion and founder events from multiple sources. Conclusions While a past genetic study based on pure FST analysis suggested that marine iguana populations display high levels of nuclear (but not mitochondrial) gene flow due to male-biased dispersal, the results of our sex-biased dispersal tests and the finding of strong genetic

  14. Population genetic structure of gray wolves (Canis lupus) in a marine archipelago suggests island-mainland differentiation consistent with dietary niche

    PubMed Central

    2014-01-01

    Background Emerging evidence suggests that ecological heterogeneity across space can influence the genetic structure of populations, including that of long-distance dispersers such as large carnivores. On the central coast of British Columbia, Canada, wolf (Canis lupus L., 1758) dietary niche and parasite prevalence data indicate strong ecological divergence between marine-oriented wolves inhabiting islands and individuals on the coastal mainland that interact primarily with terrestrial prey. Local holders of traditional ecological knowledge, who distinguish between mainland and island wolf forms, also informed our hypothesis that genetic differentiation might occur between wolves from these adjacent environments. Results We used microsatellite genetic markers to examine data obtained from wolf faecal samples. Our results from 116 individuals suggest the presence of a genetic cline between mainland and island wolves. This pattern occurs despite field observations that individuals easily traverse the 30 km wide study area and swim up to 13 km among landmasses in the region. Conclusions Natal habitat-biased dispersal (i.e., the preference for dispersal into familiar ecological environments) might contribute to genetic differentiation. Accordingly, this working hypothesis presents an exciting avenue for future research where marine resources or other components of ecological heterogeneity are present. PMID:24915756

  15. Climate Change and Genetic Structure of Leading Edge and Rear End Populations in a Northwards Shifting Marine Fish Species, the Corkwing Wrasse (Symphodus melops)

    PubMed Central

    Knutsen, Halvor; Jorde, Per Erik; Gonzalez, Enrique Blanco; Robalo, Joana; Albretsen, Jon; Almada, Vitor

    2013-01-01

    One mechanism by which marine organisms may respond to climate shifts is range shifts. The corkwing wrasse (Symphodus melops) is a temperate fish species, inhabiting the coasts of Europe, that show strong indications of current as well as historical (ice-age) range shifts towards the north. Nine neutral microsatellite DNA markers were screened to study genetic signatures and spatial population structure over the entire geographic and thermal gradient of the species from Portugal to Norway. A major genetic break (FST  = 0.159 average among pairs) was identified between Scandinavian and more southern populations, with a marked reduction (30% or more) in levels of genetic variability in Scandinavia. The break is probably related to bottleneck(s) associated with post-glacial colonization of the Scandinavian coasts, and indicates a lack of present gene flow across the North Sea. The lack of gene flow can most likely be attributed to the species’ need for rocky substrate for nesting and a relatively short pelagic larval phase, limiting dispersal by ocean currents. These findings demonstrate that long-distance dispersal may be severely limited in the corkwing wrasse, and that successful range-shifts following present climate change may be problematic for this and other species with limited dispersal abilities, even in the seemingly continuous marine environment. PMID:23840721

  16. The Bacterial Community Structure of Hydrocarbon-Polluted Marine Environments as the Basis for the Definition of an Ecological Index of Hydrocarbon Exposure

    PubMed Central

    Lozada, Mariana; Marcos, Magalí S.; Commendatore, Marta G.; Gil, Mónica N.; Dionisi, Hebe M.

    2014-01-01

    The aim of this study was to design a molecular biological tool, using information provided by amplicon pyrosequencing of 16S rRNA genes, that could be suitable for environmental assessment and bioremediation in marine ecosystems. We selected 63 bacterial genera that were previously linked to hydrocarbon biodegradation, representing a minimum sample of the bacterial guild associated with this process. We defined an ecological indicator (ecological index of hydrocarbon exposure, EIHE) using the relative abundance values of these genera obtained by pyrotag analysis. This index reflects the proportion of the bacterial community that is potentially capable of biodegrading hydrocarbons. When the bacterial community structures of intertidal sediments from two sites with different pollution histories were analyzed, 16 of the selected genera (25%) were significantly overrepresented with respect to the pristine site, in at least one of the samples from the polluted site. Although the relative abundances of individual genera associated with hydrocarbon biodegradation were generally low in samples from the polluted site, EIHE values were 4 times higher than those in the pristine sample, with at least 5% of the bacterial community in the sediments being represented by the selected genera. EIHE values were also calculated in other oil-exposed marine sediments as well as in seawater using public datasets from experimental systems and field studies. In all cases, the EIHE was significantly higher in oiled than in unpolluted samples, suggesting that this tool could be used as an estimator of the hydrocarbon-degrading potential of microbial communities. PMID:24964812

  17. The chemically synthesized ageladine A-derivative LysoGlow84 stains lysosomes in viable mammalian brain cells and specific structures in the marine flatworm Macrostomum lignano.

    PubMed

    Mordhorst, Thorsten; Awal, Sushil; Jordan, Sebastian; Petters, Charlotte; Sartoris, Linda; Dringen, Ralf; Bickmeyer, Ulf

    2015-02-11

    Based on the chemical structure and the known chemical synthesis of the marine sponge alkaloid ageladine A, we synthesized the ageladine A-derivative 4-(naphthalene-2-yl)-1H-imidazo[4,5-c]pyridine trifluoroacetate (LysoGlow84). The two-step synthesis started with the Pictet-Spengler reaction of histamine and naphthalene-2-carbaldehyde to a tetrahydropyridine intermediate, which was dehydrogenated with activated manganese (IV) oxide to LysoGlow84. Structure and purity of the synthesized LysoGlow84 were confirmed by NMR spectroscopy and mass spectrometry. The fluorescence intensity emitted by LysoGlow84 depended strongly on the pH of the solvent with highest fluorescence intensity recorded at pH 4. The fluorescence maximum (at 315 nm excitation) was observed at 440 nm. Biocompatibility of LysoGlow84 was investigated using cultured rat brain astrocytes and the marine flatworm Macrostomum lignano. Exposure of the astrocytes for up to 6 h to micromolar concentrations of LysoGlow84 did not compromise cell viability, as demonstrated by several viability assays, but revealed a promising property of this compound for staining of cellular vesicles. Conventional fluorescence microscopy as well as confocal scanning microscopy of LysoGlow84-treated astrocytes revealed co-localization of LysoGlow84 fluorescence with that of LysoTracker® Red DND-99. LysoGlow84 stained unclear structures in Macrostomum lignano, which were identified as lysosomes by co-staining with LysoTracker. Strong fluorescence staining by LysoGlow84 was further observed around the worms' anterior gut and the female genital pore which were not counterstained by LysoTracker Red. Thus, LysoGlow84 is a new promising dye that stains lysosomes and other acidic compartments in cultured cells and in worms.

  18. The Chemically Synthesized Ageladine A-Derivative LysoGlow84 Stains Lysosomes in Viable Mammalian Brain Cells and Specific Structures in the Marine Flatworm Macrostomum lignano

    PubMed Central

    Mordhorst, Thorsten; Awal, Sushil; Jordan, Sebastian; Petters, Charlotte; Sartoris, Linda; Dringen, Ralf; Bickmeyer, Ulf

    2015-01-01

    Based on the chemical structure and the known chemical synthesis of the marine sponge alkaloid ageladine A, we synthesized the ageladine A-derivative 4-(naphthalene-2-yl)-1H-imidazo[4,5-c]pyridine trifluoroacetate (LysoGlow84). The two-step synthesis started with the Pictet-Spengler reaction of histamine and naphthalene-2-carbaldehyde to a tetrahydropyridine intermediate, which was dehydrogenated with activated manganese (IV) oxide to LysoGlow84. Structure and purity of the synthesized LysoGlow84 were confirmed by NMR spectroscopy and mass spectrometry. The fluorescence intensity emitted by LysoGlow84 depended strongly on the pH of the solvent with highest fluorescence intensity recorded at pH 4. The fluorescence maximum (at 315 nm excitation) was observed at 440 nm. Biocompatibility of LysoGlow84 was investigated using cultured rat brain astrocytes and the marine flatworm Macrostomum lignano. Exposure of the astrocytes for up to 6 h to micromolar concentrations of LysoGlow84 did not compromise cell viability, as demonstrated by several viability assays, but revealed a promising property of this compound for staining of cellular vesicles. Conventional fluorescence microscopy as well as confocal scanning microscopy of LysoGlow84-treated astrocytes revealed co-localization of LysoGlow84 fluorescence with that of LysoTracker® Red DND-99. LysoGlow84 stained unclear structures in Macrostomum lignano, which were identified as lysosomes by co-staining with LysoTracker. Strong fluorescence staining by LysoGlow84 was further observed around the worms’ anterior gut and the female genital pore which were not counterstained by LysoTracker Red. Thus, LysoGlow84 is a new promising dye that stains lysosomes and other acidic compartments in cultured cells and in worms. PMID:25679913

  19. The chemically synthesized ageladine A-derivative LysoGlow84 stains lysosomes in viable mammalian brain cells and specific structures in the marine flatworm Macrostomum lignano.

    PubMed

    Mordhorst, Thorsten; Awal, Sushil; Jordan, Sebastian; Petters, Charlotte; Sartoris, Linda; Dringen, Ralf; Bickmeyer, Ulf

    2015-02-01

    Based on the chemical structure and the known chemical synthesis of the marine sponge alkaloid ageladine A, we synthesized the ageladine A-derivative 4-(naphthalene-2-yl)-1H-imidazo[4,5-c]pyridine trifluoroacetate (LysoGlow84). The two-step synthesis started with the Pictet-Spengler reaction of histamine and naphthalene-2-carbaldehyde to a tetrahydropyridine intermediate, which was dehydrogenated with activated manganese (IV) oxide to LysoGlow84. Structure and purity of the synthesized LysoGlow84 were confirmed by NMR spectroscopy and mass spectrometry. The fluorescence intensity emitted by LysoGlow84 depended strongly on the pH of the solvent with highest fluorescence intensity recorded at pH 4. The fluorescence maximum (at 315 nm excitation) was observed at 440 nm. Biocompatibility of LysoGlow84 was investigated using cultured rat brain astrocytes and the marine flatworm Macrostomum lignano. Exposure of the astrocytes for up to 6 h to micromolar concentrations of LysoGlow84 did not compromise cell viability, as demonstrated by several viability assays, but revealed a promising property of this compound for staining of cellular vesicles. Conventional fluorescence microscopy as well as confocal scanning microscopy of LysoGlow84-treated astrocytes revealed co-localization of LysoGlow84 fluorescence with that of LysoTracker® Red DND-99. LysoGlow84 stained unclear structures in Macrostomum lignano, which were identified as lysosomes by co-staining with LysoTracker. Strong fluorescence staining by LysoGlow84 was further observed around the worms' anterior gut and the female genital pore which were not counterstained by LysoTracker Red. Thus, LysoGlow84 is a new promising dye that stains lysosomes and other acidic compartments in cultured cells and in worms. PMID:25679913

  20. Predicting Consumer Biomass, Size-Structure, Production, Catch Potential, Responses to Fishing and Associated Uncertainties in the World’s Marine Ecosystems

    PubMed Central

    Jennings, Simon; Collingridge, Kate

    2015-01-01

    Existing estimates of fish and consumer biomass in the world’s oceans are disparate. This creates uncertainty about the roles of fish and other consumers in biogeochemical cycles and ecosystem processes, the extent of human and environmental impacts and fishery potential. We develop and use a size-based macroecological model to assess the effects of parameter uncertainty on predicted consumer biomass, production and distribution. Resulting uncertainty is large (e.g. median global biomass 4.9 billion tonnes for consumers weighing 1 g to 1000 kg; 50% uncertainty intervals of 2 to 10.4 billion tonnes; 90% uncertainty intervals of 0.3 to 26.1 billion tonnes) and driven primarily by uncertainty in trophic transfer efficiency and its relationship with predator-prey body mass ratios. Even the upper uncertainty intervals for global predictions of consumer biomass demonstrate the remarkable scarcity of marine consumers, with less than one part in 30 million by volume of the global oceans comprising tissue of macroscopic animals. Thus the apparently high densities of marine life seen in surface and coastal waters and frequently visited abundance hotspots will likely give many in society a false impression of the abundance of marine animals. Unexploited baseline biomass predictions from the simple macroecological model were used to calibrate a more complex size- and trait-based model to estimate fisheries yield and impacts. Yields are highly dependent on baseline biomass and fisheries selectivity. Predicted global sustainable fisheries yield increases ≈4 fold when smaller individuals (< 20 cm from species of maximum mass < 1kg) are targeted in all oceans, but the predicted yields would rarely be accessible in practice and this fishing strategy leads to the collapse of larger species if fishing mortality rates on different size classes cannot be decoupled. Our analyses show that models with minimal parameter demands that are based on a few established ecological principles