Single cell genomic study of Dehalococcoidites in deep sea sediments of Peru Margin 1230

NASA Astrophysics Data System (ADS)

Kaster, A.; Meyer-Blackwell, K.; Spormann, A. M.

2013-12-01

Dehalogenating Chloroflexi, such as Dehalococcoidites Dhc were originally discovered as the key microorganisms mediating reductive dehalogenation of the prevalent groundwater contaminants tetrachloroethene and trichloroethene. Molecular and genomic studies on their key enzymes for energy conservation, reductive dehalogenases rdh, have provided evidence for ubiquitous horizontal gene transfer. A pioneering study by Futagami et al. discovered novel putative rdh phylotypes in sediments from the Pacific, revealing an unknown and surprising abundance of rdh genes in pristine habitats. The frequent detection of Dhc-related 16S rRNA genes from these environments implied the occurrence of dissimilatory dehalorespiration in marine subsurface sediments, however, pristine Dhc could never be linked to this activity. Despite being ubiquitous in those environments, metabolic life style or ecological function of Dhc in the absence of anthropogenic contaminants is still completely unknown. We therefore analyzed a non-contaminated deep sea sediment sample of the Peru Margin 1230 site by a single cell genomic (SGC) approach. We present for the first time data on three single Dhc cells, helping to elucidate their role in the poorly understood oligotrophic marine sub-surface environment.

Microbial diversity in Cenozoic sediments recovered from the Lomonosov Ridge in the Central Arctic basin.

PubMed

Forschner, Stephanie R; Sheffer, Roberta; Rowley, David C; Smith, David C

2009-03-01

The current understanding of microbes inhabiting deeply buried marine sediments is based largely on samples collected from continental shelves in tropical and temperate latitudes. The geographical range of marine subsurface coring was expanded during the Integrated Ocean Drilling Program Arctic Coring Expedition (IODP ACEX). This expedition to the ice-covered central Arctic Ocean successfully cored the entire 428 m sediment stack on the Lomonosov Ridge during August and September 2004. The recovered cores vary from siliciclastic sediment low in organic carbon (< 0.2%) to organic rich ( approximately 3%) black sediments that rapidly accumulated in the early middle Eocene. Three geochemical environments were characterized based on chemical analyses of porewater: an upper ammonium oxidation zone, a carbonate dissolution zone and a deep (> 200 m below sea floor) sulfate reduction zone. The diversity of microbes within each zone was assessed using 16S rRNA phylogenetic markers. Bacterial 16S rRNA genes were successfully amplified from each of the biogeochemical zones, while archaea was only amplified from the deep sulfate reduction zone. The microbial communities at each zone are phylogenetically different and are most closely related to those from other deep subsurface environments.

The life sulfuric: microbial ecology of sulfur cycling in marine sediments

PubMed Central

Wasmund, Kenneth; Mußmann, Marc

2017-01-01

Summary Almost the entire seafloor is covered with sediments that can be more than 10 000 m thick and represent a vast microbial ecosystem that is a major component of Earth's element and energy cycles. Notably, a significant proportion of microbial life in marine sediments can exploit energy conserved during transformations of sulfur compounds among different redox states. Sulfur cycling, which is primarily driven by sulfate reduction, is tightly interwoven with other important element cycles (carbon, nitrogen, iron, manganese) and therefore has profound implications for both cellular‐ and ecosystem‐level processes. Sulfur‐transforming microorganisms have evolved diverse genetic, metabolic, and in some cases, peculiar phenotypic features to fill an array of ecological niches in marine sediments. Here, we review recent and selected findings on the microbial guilds that are involved in the transformation of different sulfur compounds in marine sediments and emphasise how these are interlinked and have a major influence on ecology and biogeochemistry in the seafloor. Extraordinary discoveries have increased our knowledge on microbial sulfur cycling, mainly in sulfate‐rich surface sediments, yet many questions remain regarding how sulfur redox processes may sustain the deep‐subsurface biosphere and the impact of organic sulfur compounds on the marine sulfur cycle. PMID:28419734

Depositionally controlled recycling of iron and sulfur in marine sediments and its isotopic consequences

NASA Astrophysics Data System (ADS)

Riedinger, N.; Formolo, M.; Arnold, G. L.; Vossmeyer, A.; Henkel, S.; Sawicka, J.; Kasten, S.; Lyons, T. W.

2011-12-01

The continental margin off Uruguay and Argentina is characterized by highly dynamic depositional conditions. This variable depositional regime significantly impacts the biogeochemical cycles of iron and sulfur. Mass deposit related redeposition of reduced minerals can lead to the reoxidation of these phases and thus to an overprint of their geochemical primary signatures. Due to rapid burial these oxidized phases are still present in deeper subsurface sediments. To study the effects of sediment relocation on the sulfur and iron inventory we collected shallow and deep subsurface sediment samples via multicorer and gravity cores, respectively, in the western Argentine Basin during the RV Meteor Expedition M78/3 in May-July 2009. The samples were retrieved from shelf, slope and deep basin sites. The concentration and sulfur isotope composition of acid volatile sulfur (AVS), chromium reducible sulfur (CRS), elemental sulfur and total organic sulfur were determined. Furthermore, sequential iron extraction techniques were applied assess the distribution of iron oxide phases within the sediment. The investigated sediments are dominated by terrigenous inputs, with high amounts of reactive ferric iron minerals and only low concentrations of calcium carbonate. Total organic carbon concentrations show strong variation in the shallow subsurface sediments ranging between approximately 0.7 and 6.4 wt% for different sites. These concentrations do not correlate with water depths. Pore water accumulations of hydrogen sulfide are restricted to an interval at the sulfate-methane transition (SMT) zone a few meters below the sediment surface. In these deeper subsurface sediments pyrite is precipitated in this zone of hydrogen sulfide excess, whereas the accumulation of authigenic AVS and elemental sulfur (up to 2000 ppm) occurs at the upper and lower boundary of the sulfidic zone due the reaction of iron oxides with limited amounts of sulfide. Furthermore, our preliminary results indicate that there is a link between modern deposition in the shallow subsurface sediments and the long-term signals being buried and preserved in the deep subsurface layers. The data show that the burial of elemental sulfur into deep subsurface sediments can fuel the deep biosphere and has consequences for isotopic overprints tied, for example, to oxidation and disproportionation processes in the deeper sediments.

Heterotrophic potential of Atribacteria from deep marine Antarctic sediment

NASA Astrophysics Data System (ADS)

Carr, S. A.; Orcutt, B.; Mandernack, K. W.; Spear, J. R.

2015-12-01

Bacteria belonging to the newly classified candidate phylum "Atribacteria" (formerly referred to as "OP9" and "JS1") are common in anoxic methane-rich sediments. However, the metabolic functions and biogeochemical role of these microorganisms in the subsurface remains unrealized due to the lack of pure culture representatives. This study observed a steady increase of Atribacteria-related sequences with increasing sediment depth throughout the methane-rich zone of the Adélie Basin, Antarctica (according to a 16S rRNA gene survey). To explore the functional potential of Atribacteria in this basin, samples from various depths (14, 25 and 97 meters below seafloor), were subjected to metagenomic sequencing. Additionally, individual cells were separated from frozen, unpreserved sediment for whole genome amplification. The successful isolation and sequencing of a single-amplified Atribacteria genome from these unpreserved sediments demonstrates a future use of single cell techniques with previously collected and frozen sediments. Our resulting single-cell amplified genome, combined with metagenomic interpretations, provides our first insights to the functional potential of Atribacteria in deep subsurface settings. As observed for non-marine Atribacteria, genomic analyses suggest a heterotrophic metabolism, with Atribacteria potentially producing fermentation products such as acetate, ethanol and CO2. These products may in turn support methanogens within the sediment microbial community and explain the frequent occurrence of Atribacteria in anoxic methane-rich sediments.

The role microbial sulfate reduction in the direct mediation of sedimentary authigenic carbonate precipitation

NASA Astrophysics Data System (ADS)

Turchyn, A. V.; Walker, K.; Sun, X.

2016-12-01

The majority of modern deep marine sediments are bathed in water that is undersaturated with respect to calcium carbonate. However, within marine sediments changing chemical conditions, driven largely by the microbial oxidation of organic carbon in the absence of oxygen, lead to supersaturated conditions and drive calcium carbonate precipitation. This sedimentary calcium carbonate is often called `authigenic carbonate', and is found in the form of cements and disseminated crystals within the marine sedimentary pile. As this precipitation of this calcium carbonate is microbially mediated, identifying authigenic carbonate within the geological record and understanding what information its geochemical and/or isotopic signature may hold is key for understanding its importance and what information it may contain past life. However, the modern controls on authigenic carbonate precipitation remain enigmatic because the myriad of microbially mediated reactions occurring within sediments both directly and indirectly impact the proton balance. In this submission we present data from 25 ocean sediment cores spanning the globe where we explore the deviation from the stoichiometrically predicted relationships among alkalinity, calcium and sulfate concentrations. In theory for every mol of organic carbon reduced by sulfate, two mol of alkalinity is produced, and to precipitate subsurface calcium carbonate one mol of calcium is used to consume two mol of alkalinity. We use this data with a model to explore changes in carbonate saturation state with depth below the seafloor. Alkalinity changes in the subsurface are poorly correlated with changes in calcium concentrations, however calcium concentrations are directly and tightly coupled to changes in sulfate concentrations in all studied sites. This suggests a direct role for sulfate reducing bacteria in the precipitation of subsurface carbonate cements.

Phylogenetic and Functional Diversity of Microbial Communities Associated with Subsurface Sediments of the Sonora Margin, Guaymas Basin

PubMed Central

Vigneron, Adrien; Cruaud, Perrine; Roussel, Erwan G.; Pignet, Patricia; Caprais, Jean-Claude; Callac, Nolwenn; Ciobanu, Maria-Cristina; Godfroy, Anne; Cragg, Barry A.; Parkes, John R.; Van Nostrand, Joy D.; He, Zhili; Zhou, Jizhong; Toffin, Laurent

2014-01-01

Subsurface sediments of the Sonora Margin (Guaymas Basin), located in proximity of active cold seep sites were explored. The taxonomic and functional diversity of bacterial and archaeal communities were investigated from 1 to 10 meters below the seafloor. Microbial community structure and abundance and distribution of dominant populations were assessed using complementary molecular approaches (Ribosomal Intergenic Spacer Analysis, 16S rRNA libraries and quantitative PCR with an extensive primers set) and correlated to comprehensive geochemical data. Moreover the metabolic potentials and functional traits of the microbial community were also identified using the GeoChip functional gene microarray and metabolic rates. The active microbial community structure in the Sonora Margin sediments was related to deep subsurface ecosystems (Marine Benthic Groups B and D, Miscellaneous Crenarchaeotal Group, Chloroflexi and Candidate divisions) and remained relatively similar throughout the sediment section, despite defined biogeochemical gradients. However, relative abundances of bacterial and archaeal dominant lineages were significantly correlated with organic carbon quantity and origin. Consistently, metabolic pathways for the degradation and assimilation of this organic carbon as well as genetic potentials for the transformation of detrital organic matters, hydrocarbons and recalcitrant substrates were detected, suggesting that chemoorganotrophic microorganisms may dominate the microbial community of the Sonora Margin subsurface sediments. PMID:25099369

Single-Cell Genome and Group-Specific dsrAB Sequencing Implicate Marine Members of the Class Dehalococcoidia (Phylum Chloroflexi) in Sulfur Cycling

PubMed Central

Cooper, Myriel; Schreiber, Lars; Lloyd, Karen G.; Baker, Brett J.; Petersen, Dorthe G.; Jørgensen, Bo Barker; Stepanauskas, Ramunas; Reinhardt, Richard; Schramm, Andreas; Loy, Alexander; Adrian, Lorenz

2016-01-01

ABSTRACT The marine subsurface sediment biosphere is widely inhabited by bacteria affiliated with the class Dehalococcoidia (DEH), phylum Chloroflexi, and yet little is known regarding their metabolisms. In this report, genomic content from a single DEH cell (DEH-C11) with a 16S rRNA gene that was affiliated with a diverse cluster of 16S rRNA gene sequences prevalent in marine sediments was obtained from sediments of Aarhus Bay, Denmark. The distinctive gene content of this cell suggests metabolic characteristics that differ from those of known DEH and Chloroflexi. The presence of genes encoding dissimilatory sulfite reductase (Dsr) suggests that DEH could respire oxidized sulfur compounds, although Chloroflexi have never been implicated in this mode of sulfur cycling. Using long-range PCR assays targeting DEH dsr loci, dsrAB genes were amplified and sequenced from various marine sediments. Many of the amplified dsrAB sequences were affiliated with the DEH Dsr clade, which we propose equates to a family-level clade. This provides supporting evidence for the potential for sulfite reduction by diverse DEH species. DEH-C11 also harbored genes encoding reductases for arsenate, dimethyl sulfoxide, and halogenated organics. The reductive dehalogenase homolog (RdhA) forms a monophyletic clade along with RdhA sequences from various DEH-derived contigs retrieved from available metagenomes. Multiple facts indicate that this RdhA may not be a terminal reductase. The presence of other genes indicated that nutrients and energy may be derived from the oxidation of substituted homocyclic and heterocyclic aromatic compounds. Together, these results suggest that marine DEH play a previously unrecognized role in sulfur cycling and reveal the potential for expanded catabolic and respiratory functions among subsurface DEH. PMID:27143384

Magnetic properties of Japan Sea sediments in areas which host shallow gas hydrates and in relation to the the amount of gas hydrate

NASA Astrophysics Data System (ADS)

Shimono, T.; Matsumoto, R.

2016-12-01

Shallow gas hydrate is known to occur as massive nodular aggregates in subsurface and/or shallow marine sediments (e.g. Matsumoto et al. 2009). We conducted a rock magnetic study of marine core sediments to clarify the relationship between shallow gas hydrate and the surrounding sediments. The core samples were taken from around Oki area and offshore Joetsu, the eastern margin of Japan Sea, during PS15 cruise in 2015. We mainly report magnetic susceptibility measurement of whole-round core samples. From the onboard measurements, the magnetic susceptibilities of gas hydrates indicated diamagnetic mineral like water or ice ( -0.9 x 10-5 vol. SI). Moreover, we introduce a method to assess the amount of gas hydrate present within marine sediments using magnetic susceptibility and rock magnetic analyses. This study was conducted under the commission from AIST as a part of the methane hydrate research project of METI (the Ministry of Economy, Trade and Industry, Japan).

The life sulfuric: microbial ecology of sulfur cycling in marine sediments.

PubMed

Wasmund, Kenneth; Mußmann, Marc; Loy, Alexander

2017-08-01

Almost the entire seafloor is covered with sediments that can be more than 10 000 m thick and represent a vast microbial ecosystem that is a major component of Earth's element and energy cycles. Notably, a significant proportion of microbial life in marine sediments can exploit energy conserved during transformations of sulfur compounds among different redox states. Sulfur cycling, which is primarily driven by sulfate reduction, is tightly interwoven with other important element cycles (carbon, nitrogen, iron, manganese) and therefore has profound implications for both cellular- and ecosystem-level processes. Sulfur-transforming microorganisms have evolved diverse genetic, metabolic, and in some cases, peculiar phenotypic features to fill an array of ecological niches in marine sediments. Here, we review recent and selected findings on the microbial guilds that are involved in the transformation of different sulfur compounds in marine sediments and emphasise how these are interlinked and have a major influence on ecology and biogeochemistry in the seafloor. Extraordinary discoveries have increased our knowledge on microbial sulfur cycling, mainly in sulfate-rich surface sediments, yet many questions remain regarding how sulfur redox processes may sustain the deep-subsurface biosphere and the impact of organic sulfur compounds on the marine sulfur cycle. © 2017 The Authors. Environmental Microbiology published by Society for Applied Microbiology and John Wiley & Sons Ltd.

Viral activities and life cycles in deep subseafloor sediments.

PubMed

Engelhardt, Tim; Orsi, William D; Jørgensen, Bo Barker

2015-12-01

Viruses are highly abundant in marine subsurface sediments and can even exceed the number of prokaryotes. However, their activity and quantitative impact on microbial populations are still poorly understood. Here, we use gene expression data from published continental margin subseafloor metatranscriptomes to qualitatively assess viral diversity and activity in sediments up to 159 metres below seafloor (mbsf). Mining of the metatranscriptomic data revealed 4651 representative viral homologues (RVHs), representing 2.2% of all metatranscriptome sequence reads, which have close translated homology (average 77%, range 60-97% amino acid identity) to viral proteins. Archaea-infecting RVHs are exclusively detected in the upper 30 mbsf, whereas RVHs for filamentous inoviruses predominate in the deepest sediment layers. RVHs indicative of lysogenic phage-host interactions and lytic activity, notably cell lysis, are detected at all analysed depths and suggest a dynamic virus-host association in the marine deep biosphere studied here. Ongoing lytic viral activity is further indicated by the expression of clustered, regularly interspaced, short palindromic repeat-associated cascade genes involved in cellular defence against viral attacks. The data indicate the activity of viruses in subsurface sediment of the Peruvian margin and suggest that viruses indeed cause cell mortality and may play an important role in the turnover of subseafloor microbial biomass. © 2015 Society for Applied Microbiology and John Wiley & Sons Ltd.

Microbial Communities and Organic Matter Composition in Surface and Subsurface Sediments of the Helgoland Mud Area, North Sea

PubMed Central

Oni, Oluwatobi E.; Schmidt, Frauke; Miyatake, Tetsuro; Kasten, Sabine; Witt, Matthias; Hinrichs, Kai-Uwe; Friedrich, Michael W.

2015-01-01

The role of microorganisms in the cycling of sedimentary organic carbon is a crucial one. To better understand relationships between molecular composition of a potentially bioavailable fraction of organic matter and microbial populations, bacterial and archaeal communities were characterized using pyrosequencing-based 16S rRNA gene analysis in surface (top 30 cm) and subsurface/deeper sediments (30–530 cm) of the Helgoland mud area, North Sea. Fourier Transform Ion Cyclotron Resonance Mass Spectrometry (FT-ICR MS) was used to characterize a potentially bioavailable organic matter fraction (hot-water extractable organic matter, WE-OM). Algal polymer-associated microbial populations such as members of the Gammaproteobacteria, Bacteroidetes, and Verrucomicrobia were dominant in surface sediments while members of the Chloroflexi (Dehalococcoidales and candidate order GIF9) and Miscellaneous Crenarchaeota Groups (MCG), both of which are linked to degradation of more recalcitrant, aromatic compounds and detrital proteins, were dominant in subsurface sediments. Microbial populations dominant in subsurface sediments (Chloroflexi, members of MCG, and Thermoplasmata) showed strong correlations to total organic carbon (TOC) content. Changes of WE-OM with sediment depth reveal molecular transformations from oxygen-rich [high oxygen to carbon (O/C), low hydrogen to carbon (H/C) ratios] aromatic compounds and highly unsaturated compounds toward compounds with lower O/C and higher H/C ratios. The observed molecular changes were most pronounced in organic compounds containing only CHO atoms. Our data thus, highlights classes of sedimentary organic compounds that may serve as microbial energy sources in methanic marine subsurface environments. PMID:26635758

Humic acids contribution to sedimentary organic matter on a shallow continental shelf (northern Adriatic Sea)

NASA Astrophysics Data System (ADS)

Giani, M.; Rampazzo, F.; Berto, D.

2010-12-01

The shallow northern Adriatic Sea receives large river runoff, predominantly from the Po River, which is the main allochthonous source of nutrients and organic matter. The origin and quality of organic matter deposited in the sediments can influence the degradation processes and oxygen consumption in the bottom waters as well as the fate of many pollutants. Therefore the humic acids (HA) were quantified in surface and sub-surface sediments collected in an area of the north-western Adriatic platform south of Po River. HA showed to have a relevant contribution to sedimentary organic matter. HA content in sediments were positively correlated with the organic carbon concentration and negatively with redox potential and pH, particularly in sub-surface reduced sediments, suggesting their important role in the diagenetic processes taking place in anoxic conditions. Elemental composition of HA extracted from surface and sub-surface sediments showed a wide range of variation of the C org/N ratios which could be due to a mixed (terrestrial and marine) origin and/or an elevated bacteria degradation of nitrogen during diagenesis processes in sediments. The spectroscopic ratios A 2/A 4 and A 4/A 6 of HA confirmed a mixed origin with a high degree of condensation of the HA extracted from sediments.

Marine Subsurface Microbial Communities Across a Hydrothermal Gradient in Okinawa Trough Sediments

NASA Astrophysics Data System (ADS)

Brandt, L. D.; Hser Wah Saw, J.; Ettema, T.; House, C. H.

2015-12-01

IODP Expedition 331 to the Okinawa backarc basin provided an opportunity to study the microbial stratigraphy within the sediments surrounding a hydrothermal vent. The Okinawa backarc basin is a sedimented region of the seafloor located on a continental margin, and also hosts a hydrothermal network within the subsurface. Site C0014 within the Iheya North hydrothermal field is located 450 m east of the active vent and has a surface temperature of 5°C with no evidence of hydrothermal alteration within the top 10 meters below sea floor (mbsf). Temperature increases with depth at an estimated rate of 3°C/m and transitions from non-hydrothermal margin sediments to a hydrothermally altered regime below 10 mbsf. In this study, we utilized deep 16S rRNA sequencing of DNA from IODP Expedition 331 Site C0014 sediment horizons in order to assess diversity throughout the sediment column as well as determine the potential limits of the biosphere. Analysis of the amplicon data shows a shift over 15 mbsf from a heterogeneous community of cosmopolitan marine subsurface taxa toward an archaeal-dominated community in the deepest horizons of the predicted biosphere. Notably, the phylum Chloroflexi represents a substantial taxon through most horizons, where it appears to be replaced below 10 mbsf by punctuations of thermophilic and methanotrophic Archaea and Miscellaneous Crenarchaeotic Group abundances. DNA from the aforementioned transition horizons was further analyzed using metagenomic sequencing. Preliminary taxonomic analysis of the metagenomic data agrees well with amplicon data in capturing the shift in relative abundance of Archaea increasing with depth. Additionally, reverse gyrase, a gene found exclusively in hyperthermophilic microorganisms, was recovered only in the metagenome of the deepest horizon. A BLAST search of this protein sequence against the GenBank non-redudnant protein database produced top hits with reverse gyrase from Thermococcus and Pyrococcus, which are known thermophiles. Up until now, thermophiles and hyperthermophiles have been studied in cultured hydrothermal vent fluid samples, or have been identified from 16S rRNA taxonomic analyses. These recovered genes provide direct evidence for a pervasive subsurface hyperthermophilic biosphere in off-axis hydrothermal sediments.

Variability of subseafloor viral abundance at the geographically and geologically distinct continental margins.

PubMed

Yanagawa, Katsunori; Morono, Yuki; Yoshida-Takashima, Yukari; Eitoku, Masamitsu; Sunamura, Michinari; Inagaki, Fumio; Imachi, Hiroyuki; Takai, Ken; Nunoura, Takuro

2014-04-01

We studied the relationship between viral particle and microbial cell abundances in marine subsurface sediments from three geographically distinct locations in the continental margins (offshore of the Shimokita Peninsula of Japan, the Cascadia Margin off Oregon, and the Gulf of Mexico) and found depth variations in viral abundances among these sites. Viruses in sediments obtained offshore of the Shimokita and in the Cascadia Margin generally decreased with increasing depth, whereas those in sediments from the Gulf of Mexico were relatively constant throughout the investigated depths. In addition, the abundance ratios of viruses to microbial cells notably varied among the sites, ranging between 10(-3) and 10(1) . The subseafloor viral abundance offshore of the Shimokita showed a positive relationship with the microbial cell abundance and the sediment porosity. In contrast, no statistically significant relationship was observed in the Cascadia Margin and the Gulf of Mexico sites, presumably due to the long-term preservation of viruses from enzymatic degradation within the low-porosity sediments. Our observations indicate that viral abundance in the marine subsurface sedimentary environment is regulated not only by in situ production but also by the balance of preservation and decay, which is associated with the regional sedimentation processes in the geological settings. © 2013 Federation of European Microbiological Societies. Published by John Wiley & Sons Ltd. All rights reserved.

Rates and extent of microbial debromination in the deep subseafloor biosphere

NASA Astrophysics Data System (ADS)

Berg, R. D.; Solomon, E. A.; Morris, R. M.

2013-12-01

Recent genomic and porewater geochemical data suggest that reductive dehalogenation of a wide range of halogenated organic compounds could represent an important energy source for deep subseafloor microbial communities. At continental slope sites worldwide, there is a remarkably linear relationship between porewater profiles of ammonium and bromide, indicating that the factors controlling the distribution and rates of dehalogenation have the potential to influence carbon and nitrogen cycling in the deep subsurface biosphere. Though this metabolic pathway could play an important role in the cycling of otherwise refractory pools of carbon and nitrogen in marine sediments and provide energy to microbial communities in the deep subsurface biosphere, the rates and extent of dehalogenation in marine sediments are poorly constrained. Here we report net reaction rate profiles of debromination activity in continental slope sediments, calculated from numerical modeling of porewater bromide profiles from several margins worldwide. The reaction rate profiles indicate three common zones of debromination activity in slope sediments: 1) low rates of debromination, and a potential bromine sink, in the upper sediment column correlating to the sulfate reduction zone, with net bromide removal rates from -3.6 x 10^-2 to -4.85 x 10^-1 μmol m^-2 yr^-1, 2) high rates of debromination from the sulfate-methane transition zone to ~40-100 mbsf, with net bromide release rates between 7.1 x 10^-2 to 3.9 x 10^-1 μmol m^-2 yr^-1, and 3) an inflection point at ~40-100 mbsf, below which net rates of debromination decrease by an order of magnitude and at several sites are indistinguishable from zero. These results indicate that dehalogenating activity is widely distributed in marine sediments, providing energy to fuel deep subseafloor microbial communities, with potentially important consequences for the global bromine and nitrogen cycles.

Investigation of North Pond crustal fluids by poised potential methods

NASA Astrophysics Data System (ADS)

Jones, R. M.; Orcutt, B.

2017-12-01

Microbes are present in the deep subsurface but their rates of activity, potential metabolisms and roles in the environment are still largely unknown. The marine deep crustal subsurface accounts for approximately 2.3x1018 m2 of the earth's volume, making this environment potentially significant to earth processes despite low productivity inherent in resource limited conditions. This has implications for geochemical cycling and exploring limits of life, linking to the `follow the energy' approach for defining habitability on earth and further afield. Most resources for life in the marine deep crust originate from rock. One subset of lithotrophic interactions involves direct transfer between electron acceptors and donors embedded in minerals and microbes. In this investigation, poised potential methods such as chronoamperometry were used to investigate mineral-microbe electron transfer interactions in the context of North Pond, a Mid-Atlantic ridge site representative of cool, sediment-covered basalts that make up the majority of the deep marine subsurface. Electrodes were poised at potentials corresponding approximately to particular lithotrophic oxidation reactions to enrich for sub-sections of North Pond deep subsurface fluid communities that were associated with direct electron transfer at these potentials.

Microbes of deep marine sediments as viewed by metagenomics

NASA Astrophysics Data System (ADS)

Biddle, J.

2015-12-01

Ten years after the first deep marine sediment metagenome was produced, questions still exist about the nucleic acid sequences we have retrieved. Current data sets, including the Peru Margin, Costa Rica Margin and Iberian Margin show that consistently, data forms larger assemblies at depth due to the reduced complexity of the microbial community. But are these organisms active or preserved? At SMTZs, a change in the assembly statistics is noted, as well as an increase in cell counts, suggesting that cells are truly active. As depth increases, genome sizes are consistently large, suggesting that much like soil microbes, sedimentary microbes may maintain a larger reportorie of genomic potential. Functional changes are seen with depth, but at many sites are not correlated to specific geochemistries. Individual genomes show changes with depth, which raises interesting questions on how the subsurface is settled and maintained. The subsurface does have a distinct genomic signature, including unusual microbial groups, which we are now able to analyze for total genomic content.

Archaeal Viruses Contribute to the Novel Viral Assemblage Inhabiting Oceanic, Basalt-Hosted Deep Subsurface Crustal Fluids

NASA Astrophysics Data System (ADS)

Nigro, O. D.; Rappe, M. S.; Jungbluth, S.; Lin, H. T.; Steward, G.

2015-12-01

Fluids contained in the basalt-hosted deep subsurface of the world's oceans represent one of the most inaccessible and understudied biospheres on earth. Recent improvements in sampling infrastructure have allowed us to collect large volumes of crustal fluids (~104 L) from Circulation Obviation Retrofit Kits (CORKs) placed in boreholes located on the eastern flank of the Juan de Fuca Ridge (JdFR). We detected viruses within these fluids by TEM and epifluorescence microscopy in samples collected from 2010 to 2014. Viral abundance, determined by epifluorescence counts, indicated that concentrations of viruses in subsurface basement fluids (~105 ml-1) are lower than the overlying seawater, but are higher in abundance than microbial cells in the same samples. Analysis of TEM images revealed distinct viral morphologies (rod and spindle-shaped) that resemble the morphologies of viral families infecting archaea. There are very few, if any, direct observations of these viral morphologies in marine samples, although they have been observed in enrichment cultures and their signature genes detected in metagenomic studies from hydrothermal vents and marine sediments. Analysis of metagenomes from the JdFR crustal fluids revealed sequences with homology to archaeal viruses from the rudiviridae, bicaudaviridae and fuselloviridae. Prokaryotic communities in fluids percolating through the basaltic basement rock of the JdFR flank are distinct from those inhabiting the overlying sediments and seawater. Similarly, our data support the idea that the viral assemblage in these fluids is distinct from viral assemblages in other marine and terrestrial aquatic environments. Our data also suggest that viruses contribute to the mortality of deep subsurface prokaryotes through cell lysis, and viruses may alter the genetic potential of their hosts through the processes of lysogenic conversion and horizontal gene transfer.

Ecogenomic characterization of a marine microorganism belonging to a Firmicutes lineage that is widespread in both terrestrial and oceanic subsurface environments

NASA Astrophysics Data System (ADS)

Jungbluth, S.; Glavina del Rio, T.; Tringe, S. G.; Stepanauskas, R.; Rappe, M. S.

2015-12-01

Large-volumes of basalt-hosted fluids from the sediment-covered subseafloor were collected in July 2011 from a horizon extending 29-117 meters below the sediment-rock interface at borehole 1362B, as well as from a deep horizon extending 193-292 meters below the sediment-rock interface at borehole 1362A, which are two of the latest generation of borehole observatories on the Juan de Fuca Ridge flank in the Northeast Pacific Ocean. Environmental DNA was sequenced from one fluid sample collected from each borehole, and a genomic bin related to the terrestrial Candidatus Desulforudis audaxviator lineage within the Firmicutes phylum of bacteria was identified. The near-complete bacterial genome, herein named Candidatus Desulfopertinax inferamarinus, is composed of six scaffolds totaling 1.78 Mbp in length. Despite vast differences in geography and environment of origin, phylogenomic analysis indicate that D. inferamarinus and D. audaxviator form a monophyletic clade to the exclusion of all other sequenced genomes. Similar to its terrestrial relative, the draft genome of the marine D. inferamarinus revealed a motile, sporulating, sulfate-reducing, chemoautotrophic thermophile that is capable of synthesizing all amino acids and fixing inorganic carbon via the Wood-Ljungdahl pathway. Unlike the terrestrial clade, relatively few integrases and transposases were identified. The marine genome described here provides evidence that a life-style adapted to the isolated deep subsurface environment is a general feature of the broader, globally-distributed Desulforudis/Desulfopertinax lineage and provides insight into the adaptations required for microbial life in the marine versus terrestrial deep biospheres.

Multi-heme cytochromes provide a pathway for survival in energy-limited environments

PubMed Central

Deng, Xiao; Dohmae, Naoshi; Nealson, Kenneth H.; Hashimoto, Kazuhito; Okamoto, Akihiro

2018-01-01

Bacterial reduction of oxidized sulfur species (OSS) is critical for energy production in anaerobic marine subsurfaces. In organic-poor sediments, H2 has been considered as a major energy source for bacterial respiration. We identified outer-membrane cytochromes (OMCs) that are broadly conserved in sediment OSS-respiring bacteria and enable cells to directly use electrons from insoluble minerals via extracellular electron transport. Biochemical, transcriptomic, and microscopic analyses revealed that the identified OMCs were highly expressed on the surface of cells and nanofilaments in response to electron donor limitation. This electron uptake mechanism provides sufficient but minimum energy to drive the reduction of sulfate and other OSS. These results suggest a widespread mechanism for survival of OSS-respiring bacteria via electron uptake from solid minerals in energy-poor marine sediments. PMID:29464208

Carboxydotrophy potential of uncultivated Hydrothermarchaeota from the oceanic crust deep biosphere

NASA Astrophysics Data System (ADS)

Carr, S. A.; Jungbluth, S.; Rappe, M. S.; Orcutt, B.

2017-12-01

The marine sedimentary and crustal subsurface biospheres harbor many uncultured microorganisms, including those belonging to Hydrothermarchaeota, formerly known as Marine Benthic Group E. SSU rRNA sequences of Hydrothermarchaeota have been identified in marine sediments across the globe, often in low abundance. Recently, crustal fluids from two subseafloor borehole observatories located on the eastern flank of the Juan de Fuca Ridge (i.e., CORKs at IODP Holes U1362A and U1362B), were collected for single-cell and metagenomic analyses. Both techniques revealed Hydrothermarchaeota to be prevalent in this system. Collectively, single-cell amplified genomes (SAGs) and metagenome-assembled genomes (MAGs) depict Hydrothermarchaeota as opportunists, potentially capable of dissimilative and assimilative carboxydotrophy, sulfate reduction, thiosulfate reduction, nitrate reduction, chemotaxis, and motility. We propose that this diverse suit of metabolic potential may be advantageous for the hydrologically and geochemically dynamic subsurface crustal aquifer, an environment thought to be energy and nutrient limited.

A TEX86 surface sediment database and extended Bayesian calibration

NASA Astrophysics Data System (ADS)

Tierney, Jessica E.; Tingley, Martin P.

2015-06-01

Quantitative estimates of past temperature changes are a cornerstone of paleoclimatology. For a number of marine sediment-based proxies, the accuracy and precision of past temperature reconstructions depends on a spatial calibration of modern surface sediment measurements to overlying water temperatures. Here, we present a database of 1095 surface sediment measurements of TEX86, a temperature proxy based on the relative cyclization of marine archaeal glycerol dialkyl glycerol tetraether (GDGT) lipids. The dataset is archived in a machine-readable format with geospatial information, fractional abundances of lipids (if available), and metadata. We use this new database to update surface and subsurface temperature calibration models for TEX86 and demonstrate the applicability of the TEX86 proxy to past temperature prediction. The TEX86 database confirms that surface sediment GDGT distribution has a strong relationship to temperature, which accounts for over 70% of the variance in the data. Future efforts, made possible by the data presented here, will seek to identify variables with secondary relationships to GDGT distributions, such as archaeal community composition.

Microbial abundance in the deep subsurface of the Chesapeake Bay impact crater: Relationship to lithology and impact processes

USGS Publications Warehouse

Cockell, Charles S.; Gronstal, Aaron L.; Voytek, Mary A.; Kirshtein, Julie D.; Finster, Kai; Sanford, Ward E.; Glamoclija, Mihaela; Gohn, Gregroy S.; Powars, David S.; Horton, J. Wright

2009-01-01

Asteroid and comet impact events are known to cause profound disruption to surface ecosystems. The aseptic collection of samples throughout a 1.76-km-deep set of cores recovered from the deep subsurface of the Chesapeake Bay impact structure has allowed the study of the subsurface biosphere in a region disrupted by an impactor. Microbiological enumerations suggest the presence of three major microbiological zones. The upper zone (127–867 m) is characterized by a logarithmic decline in microbial abundance from the surface through the postimpact section of Miocene to Upper Eocene marine sediments and across the transition into the upper layers of the impact tsunami resurge sediments and sediment megablocks. In the middle zone (867–1397 m) microbial abundances are below detection. This zone is predominantly quartz sand, primarily composed of boulders and blocks, and it may have been mostly sterilized by the thermal pulse delivered during impact. No samples were collected from the large granite block (1096–1371 m). The lowest zone (below 1397 m) of increasing microbial abundance coincides with a region of heavily impact-fractured, hydraulically conductive suevite and fractured schist. These zones correspond to lithologies influenced by impact processes. Our results yield insights into the influence of impacts on the deep subsurface biosphere.

Regional biostratigraphy and paleoenvironmental history of Miocene of onshore and offshore Alabama

DOE Office of Scientific and Technical Information (OSTI.GOV)

Smith, C.C.

1989-09-01

Subsurface Miocene sediments of coastal Alabama and the adjoining state and federal waters consist of a clastic wedge varying in thickness from less than 1,000 ft in southern Alabama to a maximum of about 6,000 ft in the northeastern portion of the Main Pass area. Relatively deep-water and open-marine transgressive basal Miocene clays and shales unconformably overlie a gently southwestward-dipping late Oligocene-earliest Miocene carbonate platform. Middle and late Miocene sediments consist of a regressive offlapping sequence of sand and shale deposited in varying neritic paleoenvironments. Analysis of planktonic and benthonic foraminifera has resulted in a refined biostratigraphic zonation of thesemore » sediments, permitting the recognition of several regional time-equivalent datum levels, or biohorizons. These biohorizons are shown on a series of subsurface cross sections that show the dramatic southwestward thickening of middle and late Miocene sediments as well as illustrate the relationships of the producing intervals within the Cibicides carstensi and Discorbis 12 interval zones. The paleoenvironmental history of the Miocene has been reconstructed on a series of paleobathymetric maps drawn for selected regional biohorizons. Among other features, these maps have proven the existence and outlined the margins of previously unrecognized shallow-meritic deltaic sediments in southeastern Mobile County and in the Chandeleur and Viosca Knoll (north) areas. Analysis of sedimentation rates, which range from less than 25 to 1,370 ft/m.y., further aids in understanding the coastal shelf, deltaic, and open-marine depositional history of the Miocene of Alabama and the adjoining state and federal waters.« less

Biogeochemical Cycle of Methanol in Anoxic Deep-Sea Sediments

PubMed Central

Yanagawa, Katsunori; Tani, Atsushi; Yamamoto, Naoya; Hachikubo, Akihiro; Kano, Akihiro; Matsumoto, Ryo; Suzuki, Yohey

2016-01-01

The biological flux and lifetime of methanol in anoxic marine sediments are largely unknown. We herein reported, for the first time, quantitative methanol removal rates in subsurface sediments. Anaerobic incubation experiments with radiotracers showed high rates of microbial methanol consumption. Notably, methanol oxidation to CO2 surpassed methanol assimilation and methanogenesis from CO2/H2 and methanol. Nevertheless, a significant decrease in methanol was not observed after the incubation, and this was attributed to the microbial production of methanol in parallel with its consumption. These results suggest that microbial reactions play an important role in the sources and sinks of methanol in subseafloor sediments. PMID:27301420

Diverse molecular signatures for ribosomally ‘active’ Perkinsea in marine sediments

PubMed Central

2014-01-01

Background Perkinsea are a parasitic lineage within the eukaryotic superphylum Alveolata. Recent studies making use of environmental small sub-unit ribosomal RNA gene (SSU rDNA) sequencing methodologies have detected a significant diversity and abundance of Perkinsea-like phylotypes in freshwater environments. In contrast only a few Perkinsea environmental sequences have been retrieved from marine samples and only two groups of Perkinsea have been cultured and morphologically described and these are parasites of marine molluscs or marine protists. These two marine groups form separate and distantly related phylogenetic clusters, composed of closely related lineages on SSU rDNA trees. Here, we test the hypothesis that Perkinsea are a hitherto under-sampled group in marine environments. Using 454 diversity ‘tag’ sequencing we investigate the diversity and distribution of these protists in marine sediments and water column samples taken from the Deep Chlorophyll Maximum (DCM) and sub-surface using both DNA and RNA as the source template and sampling four European offshore locations. Results We detected the presence of 265 sequences branching with known Perkinsea, the majority of them recovered from marine sediments. Moreover, 27% of these sequences were sampled from RNA derived cDNA libraries. Phylogenetic analyses classify a large proportion of these sequences into 38 cluster groups (including 30 novel marine cluster groups), which share less than 97% sequence similarity suggesting this diversity encompasses a range of biologically and ecologically distinct organisms. Conclusions These results demonstrate that the Perkinsea lineage is considerably more diverse than previously detected in marine environments. This wide diversity of Perkinsea-like protists is largely retrieved in marine sediment with a significant proportion detected in RNA derived libraries suggesting this diversity represents ribosomally ‘active’ and intact cells. Given the phylogenetic range of hosts infected by known Perkinsea parasites, these data suggest that Perkinsea either play a significant but hitherto unrecognized role as parasites in marine sediments and/or members of this group are present in the marine sediment possibly as part of the ‘seed bank’ microbial community. PMID:24779375

Quantification of Microbial Communities in Subsurface Marine Sediments of the Black Sea and off Namibia.

PubMed

Schippers, Axel; Kock, Dagmar; Höft, Carmen; Köweker, Gerrit; Siegert, Michael

2012-01-01

Organic-rich subsurface marine sediments were taken by gravity coring up to a depth of 10 m below seafloor at six stations from the anoxic Black Sea and the Benguela upwelling system off Namibia during the research cruises Meteor 72-5 and 76-1, respectively. The quantitative microbial community composition at various sediment depths was analyzed using total cell counting, catalyzed reporter deposition - fluorescence in situ hybridization (CARD-FISH) and quantitative real-time PCR (Q-PCR). Total cell counts decreased with depths from 10(9) to 10(10) cells/mL at the sediment surface to 10(7)-10(9) cells/mL below one meter depth. Based on CARD-FISH and Q-PCR analyses overall similar proportions of Bacteria and Archaea were found. The down-core distribution of prokaryotic and eukaryotic small subunit ribosomal RNA genes (16S and 18S rRNA) as well as functional genes involved in different biogeochemical processes was quantified using Q-PCR. Crenarchaeota and the bacterial candidate division JS-1 as well as the classes Anaerolineae and Caldilineae of the phylum Chloroflexi were highly abundant. Less abundant but detectable in most of the samples were Eukarya as well as the metal and sulfate-reducing Geobacteraceae (only in the Benguela upwelling influenced sediments). The functional genes cbbL, encoding for the large subunit of RuBisCO, the genes dsrA and aprA, indicative of sulfate-reducers as well as the mcrA gene of methanogens were detected in the Benguela upwelling and Black Sea sediments. Overall, the high organic carbon content of the sediments goes along with high cell counts and high gene copy numbers, as well as an equal abundance of Bacteria and Archaea.

Potential Physiologies of Deep Branches on the Tree of Life with Deep Subsurface Samples from IODP Leg 347: Baltic Sea Paleoenvironment

NASA Astrophysics Data System (ADS)

Lloyd, K. G.; Bird, J. T.; Shumaker, A.

2014-12-01

Very little is known about how evolutionary branches that are distantly related to cultured microorganisms make a living in the deep subsurface marine environment. Here, sediments are cut-off from surface inputs of organic substrates for tens of thousands of years; yet somehow support a diverse population of microorganisms. We examined the potential metabolic and ecological roles of uncultured archaea and bacteria in IODP Leg 347: Baltic Sea Paleoenvironment samples, using quantitative PCR holes 60B, 63E, 65C, and 59C and single cell genomic analysis for hole 60B. We quantified changes in total archaea and bacteria, as well as deeply-branching archaeal taxa with depth. These sediment cores alternate between high and low salinities, following a glacial cycle. This allows changes in the quantities of these groups to be placed in the context of potentially vastly different organic matter sources. In addition, single cells were isolated, and their genomes were amplified and sequenced to allow a deeper look into potential physiologies of uncultured deeply-branching organisms found up to 86 meters deep in marine sediments. Together, these data provide deeper insight into the relationship between microorganisms and their organic matter substrates in this extreme environments.

Microbial activity in the marine deep biosphere: progress and prospects.

PubMed

Orcutt, Beth N; Larowe, Douglas E; Biddle, Jennifer F; Colwell, Frederick S; Glazer, Brian T; Reese, Brandi Kiel; Kirkpatrick, John B; Lapham, Laura L; Mills, Heath J; Sylvan, Jason B; Wankel, Scott D; Wheat, C Geoff

2013-01-01

The vast marine deep biosphere consists of microbial habitats within sediment, pore waters, upper basaltic crust and the fluids that circulate throughout it. A wide range of temperature, pressure, pH, and electron donor and acceptor conditions exists-all of which can combine to affect carbon and nutrient cycling and result in gradients on spatial scales ranging from millimeters to kilometers. Diverse and mostly uncharacterized microorganisms live in these habitats, and potentially play a role in mediating global scale biogeochemical processes. Quantifying the rates at which microbial activity in the subsurface occurs is a challenging endeavor, yet developing an understanding of these rates is essential to determine the impact of subsurface life on Earth's global biogeochemical cycles, and for understanding how microorganisms in these "extreme" environments survive (or even thrive). Here, we synthesize recent advances and discoveries pertaining to microbial activity in the marine deep subsurface, and we highlight topics about which there is still little understanding and suggest potential paths forward to address them. This publication is the result of a workshop held in August 2012 by the NSF-funded Center for Dark Energy Biosphere Investigations (C-DEBI) "theme team" on microbial activity (www.darkenergybiosphere.org).

Microbial activity in the marine deep biosphere: progress and prospects

PubMed Central

Orcutt, Beth N.; LaRowe, Douglas E.; Biddle, Jennifer F.; Colwell, Frederick S.; Glazer, Brian T.; Reese, Brandi Kiel; Kirkpatrick, John B.; Lapham, Laura L.; Mills, Heath J.; Sylvan, Jason B.; Wankel, Scott D.; Wheat, C. Geoff

2013-01-01

The vast marine deep biosphere consists of microbial habitats within sediment, pore waters, upper basaltic crust and the fluids that circulate throughout it. A wide range of temperature, pressure, pH, and electron donor and acceptor conditions exists—all of which can combine to affect carbon and nutrient cycling and result in gradients on spatial scales ranging from millimeters to kilometers. Diverse and mostly uncharacterized microorganisms live in these habitats, and potentially play a role in mediating global scale biogeochemical processes. Quantifying the rates at which microbial activity in the subsurface occurs is a challenging endeavor, yet developing an understanding of these rates is essential to determine the impact of subsurface life on Earth's global biogeochemical cycles, and for understanding how microorganisms in these “extreme” environments survive (or even thrive). Here, we synthesize recent advances and discoveries pertaining to microbial activity in the marine deep subsurface, and we highlight topics about which there is still little understanding and suggest potential paths forward to address them. This publication is the result of a workshop held in August 2012 by the NSF-funded Center for Dark Energy Biosphere Investigations (C-DEBI) “theme team” on microbial activity (www.darkenergybiosphere.org). PMID:23874326

Fungal diversity from deep marine subsurface sediments (IODP 317, Canterbury Basin, New Zealand)

NASA Astrophysics Data System (ADS)

Redou, V.; Arzur, D.; Burgaud, G.; Barbier, G.

2012-12-01

Recent years have seen a growing interest regarding micro-eukaryotic communities in extreme environments as a third microbial domain after Bacteria and Archaea. However, knowledge is still scarce and the diversity of micro-eukaryotes in such environments remains hidden and their ecological role unknown. Our research program is based on the deep sedimentary layers of the Canterbury Basin in New Zealand (IODP 317) from the subsurface to the record depth of 1884 meters below seafloor. The objectives of our study are (i) to assess the genetic diversity of fungi in deep-sea sediments and (ii) identify the functional part in order to better understand the origin and the ecological role of fungal communities in this extreme ecosystem. Fingerprinting-based methods using capillary electrophoresis single-strand conformation polymorphism and denaturing high-performance liquid chromatography were used as a first step to raise our objectives. Molecular fungal diversity was assessed using amplification of ITS1 (Internal Transcribed Spacer 1) as a biomarker on 11 samples sediments from 3.76 to 1884 meters below seafloor. Fungal molecular signatures were detected throughout the sediment core. The phyla Ascomycota and Basidiomycota were revealed with DNA as well as cDNA. Most of the phylotypes are affiliated to environmental sequences and some to common fungal cultured species. The discovery of a present and metabolically active fungal component in this unique ecosystem allows some interesting first hypotheses that will be further combined to culture-based methods and deeper molecular methods (454 pyrosequencing) to highlight essential informations regarding physiology and ecological role of fungal communities in deep marine sediments.

Novel applications for biogeophysics: Prospects for detecting key subseafloor geomicrobiological processes or habitats

NASA Astrophysics Data System (ADS)

Colwell, F. S.; Ntarlagiannis, D.

2007-05-01

The new subdiscipline of biogeophysics has focused mostly on the geophysical signatures of microbial processes in contaminated subsurface environments usually undergoing remediation. However, the use of biogeophysics to examine the biogeochemistry of marine sediments has not yet been well-integrated into conceptual models that describe subseafloor processes. Current examples of geophysical measurements that have been used to detect geomicrobiological processes or infer their location in the seafloor include sound surveillance system (SOSUS)-derived data that detect seafloor eruptive events, deep and shallow cross-sectional seismic surveys that determine the presence of hydraulically conductive zones or gas-bearing sediments (e.g., bottom-simulating reflectors or bubble-rich strata), and thermal profiles. One possible area for innovative biogeophysical characterization of the seafloor involves determining the depth of the sulfate-methane interface (SMI) in locations where sulfate diffuses from the seawater and methane emanates from subsurface strata. The SMI demarcates a stratum where microbially-driven anaerobic methane oxidation (AMO) is dependent upon methane as an electron donor and sulfate as an electron acceptor. AMO is carried out by a recently defined, unique consortium of microbes that metabolically temper the flux of methane into the overlying seawater. The depth of the SMI is, respectively, shallow or deep according to whether a high or low rate of methane flux occurs from the deep sediments. Presently, the SMI can only be determined by direct measurements of methane and sulfate concentrations in the interstitial waters or by molecular biological techniques that target the microbes responsible for creating the SMI. Both methods require collection and considerable analysis of sediment samples. Therefore, detection of the SMI by non-destructive methods would be advantageous. As a key biogeochemical threshold in marine sediments, the depth of the SMI defines methane charge in marine sediments, whether it is from dissolved methane or from methane hydrates. As such, a biogeophysical strategy for determining SMI depth would represent an important contribution to assessing methane charge with respect to climate change, sediment stability, or potential energy resources.

Submarine groundwater discharge into the coast revealed by water chemistry of man-made undersea liquefied petroleum gas cavern

NASA Astrophysics Data System (ADS)

Lee, Jin-Yong; Cho, Byung Wook

2008-10-01

SummaryThe occurrence of submarine groundwater discharge (SGD) as well as its supply of many nutrients and metals to coastal seawaters is now generally known. However, previous studies have focused on the chemical and radiological analysis of groundwater, surface seawater, shallow marine sediments and their pore waters, as well as the measurement of upward flow through the marine sediments, as end members of the discharge process. In this study, chemical and isotopic analysis results of marine subsurface waters are reported. These were obtained from deep boreholes of an undersea liquefied petroleum gas (LPG) storage cavern, located about 8 km off the western coast of Korea. The cavern is about 130-150 m below the sea bottom, which is covered by a 4.8-19.5 m silty clay stratum. An isotopic composition (δ 2H and δ 18O) of the marine subsurface waters falls on a mixing line between terrestrial groundwater and seawater. Vertical EC profiling at the cavern boreholes revealed the existence of a fresh water zone. An increase in the contents of ferrous iron and manganese and a decrease in levels of nitrate, bicarbonate and cavern seepage were recorded in August 2006, indicating a decreased submarine groundwater flux originating from land, mainly caused by an elevated cavern gas pressure. It is suggested in this study that the main source of fresh waters in the man-made undersea cavern is the submarine groundwater discharge mainly originating from the land.

Sources of dissolved salts in the central Murray Basin, Australia

USGS Publications Warehouse

Jones, B.F.; Hanor, J.S.; Evans, W.R.

1994-01-01

Large areas of the Australian continent contain scattered saline lakes underlain by shallow saline groundwaters of regional extent and debated origin. The normative salt composition of subsurface pore fluids extracted by squeezing cores collected during deep drilling at Piangil West 2 in the central Murray Basin in southeastern Australia, and of surface and shallow subsurface brines produced by subaerial evaporation in the nearby Lake Tyrrell systems, helps constrain interpretation of the origin of dissolved solutes in the groundwaters of this part of the continent. Although regional sedimentation in the Murray Basin has been dominantly continental except for a marine transgression in Oligocene-Pliocene time, most of the solutes in saline surface and subsurface waters in the central Murray Basin have a distinctly marine character. Some of the Tyrrell waters, to the southwest of Piangil West 2, show the increase in NaCl and decrease in sulfate salts expected with evaporative concentration and gypsum precipitation in an ephemeral saline lake or playa environment. The salt norms for most of the subsurface saline waters at Piangil West 2 are compatible with the dilution of variably fractionated marine bitterns slightly depleted in sodium salts, similar to the more evolved brines at Lake Tyrrell, which have recharged downward after evaporation at the surface and then dissolved a variable amount of gypsum at depth. Apparently over the last 0.5 Ma significant quantities of marine salt have been blown into the Murray Basin as aerosols which have subsequently been leached into shallow regional groundwater systems basin-wide, and have been transported laterally into areas of large evaporative loss in the central part of the basin. This origin for the solutes helps explain why the isotopic compositions of most of the subsurface saline waters at Piangil West 2 have a strong meteoric signature, whereas the dissolved salts in these waters appear similar to a marine assemblage. ?? 1994.

Ubiquitous Gammaproteobacteria dominate dark carbon fixation in coastal sediments.

PubMed

Dyksma, Stefan; Bischof, Kerstin; Fuchs, Bernhard M; Hoffmann, Katy; Meier, Dimitri; Meyerdierks, Anke; Pjevac, Petra; Probandt, David; Richter, Michael; Stepanauskas, Ramunas; Mußmann, Marc

2016-08-01

Marine sediments are the largest carbon sink on earth. Nearly half of dark carbon fixation in the oceans occurs in coastal sediments, but the microorganisms responsible are largely unknown. By integrating the 16S rRNA approach, single-cell genomics, metagenomics and transcriptomics with (14)C-carbon assimilation experiments, we show that uncultured Gammaproteobacteria account for 70-86% of dark carbon fixation in coastal sediments. First, we surveyed the bacterial 16S rRNA gene diversity of 13 tidal and sublittoral sediments across Europe and Australia to identify ubiquitous core groups of Gammaproteobacteria mainly affiliating with sulfur-oxidizing bacteria. These also accounted for a substantial fraction of the microbial community in anoxic, 490-cm-deep subsurface sediments. We then quantified dark carbon fixation by scintillography of specific microbial populations extracted and flow-sorted from sediments that were short-term incubated with (14)C-bicarbonate. We identified three distinct gammaproteobacterial clades covering diversity ranges on family to order level (the Acidiferrobacter, JTB255 and SSr clades) that made up >50% of dark carbon fixation in a tidal sediment. Consistent with these activity measurements, environmental transcripts of sulfur oxidation and carbon fixation genes mainly affiliated with those of sulfur-oxidizing Gammaproteobacteria. The co-localization of key genes of sulfur and hydrogen oxidation pathways and their expression in genomes of uncultured Gammaproteobacteria illustrates an unknown metabolic plasticity for sulfur oxidizers in marine sediments. Given their global distribution and high abundance, we propose that a stable assemblage of metabolically flexible Gammaproteobacteria drives important parts of marine carbon and sulfur cycles.

Biomass measurement of methane forming bacteria in environmental samples

NASA Technical Reports Server (NTRS)

Martz, R. F.; Sebacher, D. I.; White, D. C.

1983-01-01

Methane-forming bacteria contain unusual phytanylglycerol ether phospholipids which can be extracted from the bacteria in sediments and assayed quantitatively by high performance liquid chromatography (HPLC). In this procedure the lipids were extracted, the phospholipids recovered, hydrolyzed, purified by thin layer chromatography, derivatized and assayed by HPLC. Ether lipids were recovered quantitatively from Methanobacterium thermoautotrophicum and sediments at levels as low as 8 x 10(-14) moles. In freshwater and marine sediments the flux of methane to the atmosphere and the methane levels in the pore water reflects the recovery of the phytanyl glycerol ether lipid 'signature'. The proportion of the ether phospholipid to the total recoverable phospholipid was highest in anaerobic digester sewage sludge and deeper subsurface freshwater sediment horizons.

Distribution of surface deposits in the Gijón urban subsurface (NW Spain)

NASA Astrophysics Data System (ADS)

López-Fernández, Carlos; Pando, Luis; María Díaz-Díaz, Luis; Arias, Daniel; Flor-Blanco, Germán

2016-04-01

Gijón is the second most populous city (278.285 inhabitants in 2015) of the Spanish north coast. The urban subsurface is mostly formed (≈80%) by Quaternary sediments which exceeds 20 meters of thickness when cover the Jurassic carbonate basement (Gijón Formation). This work has allowed to know the spatial distribution of the different types of sediments in urban area. To do this, a GIS database was developed that contains data from more than 450 geotechnical reports. Information provided by fieldwork and the exploration of excavation works in progress throughout the city was also incorporated. Currently, the geodatabase developed comprises more than 1,400 site investigation points: boreholes, dynamic probing and trial pits. This has been supplemented with hundreds on-site and laboratory tests carried out on core samples of soils and rocks, performed following renowned testing standards. Quaternary formations, largely concealed below man-made fills, set up two main areas composed by granular and cohesive soils: the littoral zone at the northern urban perimeter and the continental zone at the southern sector. The first one, fluvial-marine deposits, consist of sandy sediments related to beach/dune systems and marsh deposits, with gravels, organogenic mud and layers of Holocene peat. The southern area is composed by residual clays -silt and coarse-grained soils to a lesser extent- linked to the dissolution of the Mesozoic substrate. Associated with these two types of deposits, two main aquifers can be differentiated. The thickness of the man-made deposits, fluvial-marine sediments and residual deposits was determined in this work. Thus, a 3-d model of Gijón subsurface at urban scale was obtained. A map of the Jurassic bedrock bedrock was also produced. Building construction works may be affected by the geotechnical behavior of the Quaternary deposits and the saturation of granular sediments., This is because the shallowness of the water table, the usual low bearing capacity and other issues such as clays consolidation or swelling phenomena. The use of concrete slabs, deep foundations and piled/anchored retaining walls is very common when projecting underground floors under these conditions.

Where the oil from surface and subsurface plumes deposited during/after Deepwater Horizon oil spill?

NASA Astrophysics Data System (ADS)

Yan, B.

2016-02-01

The Deepwater Horizon (DwH) oil spill released an estimated 4.9 million barrels (about 200 million gallons) of crude oil into the Gulf of Mexico between April 20, 2010 and July 15, 2010. Though Valentine et al. has linked the elevated oil components in some sediments with the subsurface plume, the sites with fallout from the ocean surface plume has not been identified. This piece of information is critical not only for a comprehensive scientific understanding of the ecosystem response and fate of spill-related pollutants, but also for litigation purposes and future spill response and restoration planning. In this study we focus on testing the hypothesis that marine snow from the surface plume were deposited on the sea floor over a broad area. To do so, we use publicly available data generated as part of the ongoing Natural Resource Damage Assessment (NRDA) process to assess the spatial distribution of petroleum hydrocarbons in the water column and deep-ocean sediments of the Gulf of Mexico. Sensitive hydrocarbon markers are used to differentiate hydrocarbons from surface plume, deep subsurface plume, and in-situ burning. Preliminary results suggest the overlapping but different falling sites of these plumes and the sedimentation process was controlled by various biological, chemical, and physical factors.

Pollen and spores date origin of rift basins from Texas to nova scotia as early late triassic.

PubMed

Traverse, A

1987-06-12

Palynological studies of the nonmarine Newark Supergroup of eastern North America and of rift basins in the northern Gulf of Mexico facilitate correlation with well-dated marine sections of Europe. New information emphasizes the chronological link between the Newark basins and a Gulf of Mexico basin and their common history in the rifting of North America from Pangea. Shales from the subsurface South Georgia Basin are shown to be of late Karnian age (early Late Triassic). The known time of earliest sedimentation in the Culpeper Basin is extended from Norian (late Late Triassic) to mid-Karnian, and the date of earliest sedimentation in the Richmond and Deep River basins is moved to at least earliest Karnian, perhaps Ladinian. The subsurface Eagle Mills Formation in Texas and Arkansas has been dated palynologically as mid- to late Karnian. The oldest parts of the Newark Supergroup, and the Eagle Mills Formation, mostly began deposition in precursor rift basins that formed in Ladinian to early Karnian time. In the southern Newark basins, sedimentation apparently ceased in late Karnian but continued in the northern basins well into the Jurassic, until genesis of the Atlantic ended basin sedimentation.

Microeukaryotic diversity in marine environments, an analysis of surface layer sediments from the East Sea.

PubMed

Park, Soo-Je; Park, Byoung-Joon; Pham, Vinh Hoa; Yoon, Dae-No; Kim, Si-Kwan; Rhee, Sung-Keun

2008-06-01

Molecular techniques, based on clone library of 18S rRNA gene, were employed to ascertain the diversity of microeukaryotic organisms in sediments from the East Sea. A total of 261 clones were recovered from surface sediments. Most of the clone sequences (90%) were affiliated with protists, dominated by Ciliates (18%) and Dinoflagellates (19%) of Alveolates, phototrophic Stramenopiles (11%), and Cercozoa (20%). Many of the clones were related to uncultivated eukaryotes clones retrieved from anoxic environments with several highly divergent 18S rRNA gene sequences. However, no clones were related to cultivated obligate anaerobic protists. Protistan communities between subsurface layers of 1 and 9 cm shared 23% of total phylotypes which comprised 64% of total clones retrieved. Analysis of diversity indices and rarefaction curve showed that the protistan community within the 1 cm layer exhibited higher diversity than the 9 cm layer. Our results imply that diverse protists remain to be uncovered within marine benthic environments.

Snow on the Seafloor? Methods to Detect Carbohydrates in Deep-sea Sediments Impacted by the Deepwater Horizon Oil Spill

NASA Astrophysics Data System (ADS)

Lincoln, S. A.; Freeman, K. H.

2015-12-01

A significant portion of the oil released from the Macondo well after the 2010 Deepwater Horizon (DwH) explosion reached the seafloor (1,2). The transfer of buoyant hydrocarbons from the sea surface and subsurface plumes to depths >1500 m, however, is not well understood. A prominent role for sinking marine snow--small, composite particles composed largely of extracellular polymeric substances exuded by algae and bacteria--has been proposed. Snow particles, rich in carbohydrates, may have sorbed and physically entrained oil from the water column as they sank. Several lines of evidence support this scenario: abundant snow was observed 3-4 weeks after the oil spill (3); oil and dispersants can induce marine snow formation (4); and flocculent material covering deep-sea corals near the DwH site contained biomarkers consistent with Macondo oil (5). To investigate whether the chemically complex marine oil snow leaves a direct sedimentary record, we analyzed carbohydrates at high resolution (2 mm intervals) in sediment cores collected at 4 sites in the northern Gulf of Mexico in 2013 using a modified phenol-sulfuric acid spectrophotometric method. We detected a sharp subsurface peak in carbohydrate concentrations near the Macondo well; we interpret this peak as post-DwH marine snow. Coeval carbohydrate, polycyclic aromatic hydrocarbon, and hopane profiles suggest a clear link between marine snow and Macondo oil components, as documented in a 3-year time-series at one site, and enable preliminary conclusions about the delivery and fate of marine snow components in sediments. We also characterized carbohydrates near the wellhead using fluorescent lectin-binding analyses developed for applications in cell biology. Particle morphologies include collapse structures suggestive of a water column origin. Finally, we explore the extent to which polysaccharide residues detected with selective lectins can be used to determine the provenance of marine snow (e.g., bacterial v. algal). (1) Valentine et al., 2014. PNAS 111, 15906-15911. (2) Romero et al., 2015. PLOS One 10(5): e0128371 (3) Passow et al., ERL 7, 035301. (4) Passow, 2014. Deep-Sea Res. II, http://dx.doi. org/10.1016/j.dsr2.2014.10.001i (5) White et al., 2012. PNAS 109(50), 20303-20308.

A buried marine depositional sequence (Presumpscot FM. ) N. of the marine limit, Waterboro, Maine

DOE Office of Scientific and Technical Information (OSTI.GOV)

Morency, R.E.

Subsurface investigations conducted in Waterboro, ME (York Co.) in connection with studies of two hazardous waste sites and a municipal water supply exploration project, have demonstrated that a laterally extensive sequence of marine deposits underlies surficial sediments mapped as non-esker ice contact glacio-fluvial deposits. The marine deposits consist of a fining-downwards sequence of grey, micaceous sands (fine to medium, grading down to a silty-fine sand), which grade downward into a thick ([plus minus] 30 feet) grey silt/clay unit, which itself shows a fining-downward trend. The stratigraphy is likely correlative to the Presumpscot Formation, as described by Bloom (1963). The bottommore » of the regressive marine sequence is marked at several locations by a thin layer of sand-sized biotite mica. Lodgement till was encountered only at scattered localities (in boreholes) at each site. The bedrock surface is of considerable relief, with changes of 200--300 feet over short distances detected. The sequence appears to be the record of a rapidly transgressing sea which inundated a valley where outwash had been deposited by meltwater ahead of retreating ice. As the sea retreated, up to 70 feet of sediment was deposited in a continuous, coarsening-upwards sequence. Subsequent to the marine regression, the sediments were reworked in a subaerial (braided stream) environment. The Surficial Geologic Map of Maine shows that the inland limit of late-glacial marine submergence is located approximately 8 miles southwest of Waterboro, in Alfred, Maine. The marine limit in Alfred takes the form of a NNE trending, blunt-ended embayment. The results of this study suggest that the marine embayment once extended northward from Alfred, and is now a buried feature, possibly representing a preglacial valley, which hosted an estuary in late Wisconsonian time.« less

Tropical North Atlantic subsurface warming events as a fingerprint for AMOC variability during Marine Isotope Stage 3

NASA Astrophysics Data System (ADS)

Parker, Andrew O.; Schmidt, Matthew W.; Chang, Ping

2015-11-01

The role of Atlantic Meridional Overturning Circulation (AMOC) as the driver of Dansgaard-Oeschger (DO) variability that characterized Marine Isotope Stage 3 (MIS 3) has long been hypothesized. Although there is ample proxy evidence suggesting that DO events were robust features of glacial climate, there is little data supporting a link with AMOC. Recently, modeling studies and subsurface temperature reconstructions have suggested that subsurface warming across the tropical North Atlantic can be used to fingerprint a weakened AMOC during the deglacial because a reduction in the strength of the western boundary current allows warm salinity maximum water of the subtropical gyre to enter the deep tropics. To determine if AMOC variability played a role during the DO cycles of MIS 3, we present new, high-resolution Mg/Ca and δ18O records spanning 24-52 kyr from the near-surface dwelling planktonic foraminifera Globigerinoides ruber and the lower thermocline dwelling planktonic foraminifera Globorotalia truncatulinoides in Southern Caribbean core VM12-107 (11.33°N, 66.63°W, 1079 m depth). Our subsurface Mg/Ca record reveals abrupt increases in Mg/Ca ratios (the largest equal to a 4°C warming) during the interstadial-stadial transition of most DO events during this period. This change is consistent with reconstructions of subsurface warming events associated with cold events across the deglacial using the same core. Additionally, our data support the conclusion reached by a recently published study from the Florida Straits that AMOC did not undergo significant reductions during Heinrich events 2 and 3. This record presents some of the first high-resolution marine sediment derived evidence for variable AMOC during MIS 3.

Shallow geology, sea-floor texture, and physiographic zones of Buzzards Bay, Massachusetts

USGS Publications Warehouse

Foster, David S.; Baldwin, Wayne E.; Barnhardt, Walter A.; Schwab, William C.; Ackerman, Seth D.; Andrews, Brian D.; Pendleton, Elizabeth A.

2015-01-07

Geologic, sediment texture, and physiographic zone maps characterize the sea floor of Buzzards Bay, Massachusetts. These maps were derived from interpretations of seismic-reflection profiles, high-resolution bathymetry, acoustic-backscatter intensity, bottom photographs, and surficial sediment samples. The interpretation of the seismic stratigraphy and mapping of glacial and Holocene marine units provided a foundation on which the surficial maps were created. This mapping is a result of a collaborative effort between the U.S. Geological Survey and the Massachusetts Office of Coastal Zone Management to characterize the surface and subsurface geologic framework offshore of Massachusetts.

Faulting of gas-hydrate-bearing marine sediments - contribution to permeability

USGS Publications Warehouse

Dillon, William P.; Holbrook, W.S.; Drury, Rebecca; Gettrust, Joseph; Hutchinson, Deborah; Booth, James; Taylor, Michael

1997-01-01

Extensive faulting is observed in sediments containing high concentrations of methane hydrate off the southeastern coast of the United States. Faults that break the sea floor show evidence of both extension and shortening; mud diapirs are also present. The zone of recent faulting apparently extends from the ocean floor down to the base of gas-hydrate stability. We infer that the faulting resulted from excess pore pressure in gas trapped beneath the gas hydrate-beating layer and/or weakening and mobilization of sediments in the region just below the gas-hydrate stability zone. In addition to the zone of surface faults, we identified two buried zones of faulting, that may have similar origins. Subsurface faulted zones appear to act as gas traps.

Extraction of Seabed/Subsurface Features in a Potential CO2 Sequestration Site in the Southern Baltic Sea, Using Wavelet Transform of High-resolution Sub-Bottom Profiler Data

NASA Astrophysics Data System (ADS)

Tegowski, J.; Zajfert, G.

2014-12-01

Carbon Capture & Storage (CCS) efficiently prevents the release of anthropogenic CO2 into the atmosphere. We investigate a potential site in the Polish Sector of the Baltic Sea (B3 field site), consisting in a depleted oil and gas reservoir. An area ca. 30 x 8 km was surveyed along 138 acoustic transects, realised from R/V St. Barbara in 2012 and combining multibeam echosounder, sidescan sonar and sub-bottom profiler. Preparation of CCS sites requires accurate knowledge of the subsurface structure of the seafloor, in particular deposit compactness. Gas leaks in the water column were monitored, along with the structure of upper sediment layers. Our analyses show the shallow sub-seabed is layered, and quantified the spatial distribution of gas diffusion chimneys and seabed effusion craters. Remote detection of gas-containing surface sediments can be rather complex if bubbles are not emitted directly into the overlying water and thus detectable acoustically. The heterogeneity of gassy sediments makes conventional bottom sampling methods inefficient. Therefore, we propose a new approach to identification, mapping, and monitoring of potentially gassy surface sediments, based on wavelet analysis of echo signal envelopes of a chirp sub-bottom profiler (EdgeTech SB-0512). Each echo envelope was subjected to wavelet transformation, whose coefficients were used to calculate wavelet energies. The set of echo envelope parameters was input to fuzzy logic and c-means algorithms. The resulting classification highlights seafloor areas with different subsurface morphological features, which can indicate gassy sediments. This work has been conducted under EC FP7-CP-IP project No. 265847: Sub-seabed CO2 Storage: Impact on Marine Ecosystems (ECO2).

Survival in the hot subsurface: Hydrogen stress on hyperthermophilic heterotrophs and methanogens

NASA Astrophysics Data System (ADS)

Topcuoglu, B. D.; Holden, J. F.

2017-12-01

Marine hyperthermophilic heterotrophs and methanogens belonging to the Thermococcales and Methanococcales are often found in hot subsurface environments such as hydrothermal vents, marine sediments, and oil reservoirs. This project aims to make fundamental advances in our understanding of interspecies microbe-microbe interactions in hot subsurface environments by integrating metabolic network modeling, transcriptomic analyses and continuous cultivation of hyperthermophiles and describe how heterotrophs and methanogens eliminate H2 stress. Some subsurface environments may lack alternative electron acceptors (e.g., S°) for the heterotroph and sufficient environmental flux rates to draw in fresh energy sources or remove excess metabolic products. We observed a decrease in growth rates for the H2-producer Thermococcus paralvinellae when grown with an aqueous H2 background of 65 µM relative to no added H2. Metabolite analysis showed increased formate production during H2 inhibition. Differential gene expression analyses coupled with metabolic network modeling showed that T. paralvinellae oxidized H2 and made formate by a formate hydrogenlyase to survive H2 inhibition. Low H2 concentrations (20 µM) also caused a decrease in growth and CH4 production rates for the H2-consuming methanogen Methanocaldococcus jannaschii. H2 stress in both organisms was ameliorated when the organisms were grown together syntrophically. CH4 was produced without any added H2 during syntrophic growth, and there was no formate produced by T. paralvinellae. These organisms may impact the biogeochemistry, especially natural gas production, in saline, organic-rich subsurface environments when both are present.

Deep subsurface life in Bengal Fan sediments (IODP Exp. 354)

NASA Astrophysics Data System (ADS)

Adhikari, R. R.; Heuer, V. B.; Elvert, M.; Kallmeyer, J.; Kitte, J. A.; Wörmer, L.; Hinrichs, K. U.

2017-12-01

We collected Bengal Fan sediment samples along a 8°N transect during International Ocean Discovery Program Expedition 354 (February - March 2015, Singapore - Colombo, Sri Lanka) to study subseafloor life in this, as yet unstudied, area. Among other biogeochemical parameters, we quantified microbial biomass by analyzing prokaryotic cells using epifluorescence microscopy after detaching cells from the sediment, and bacterial endospores by analyzing the diagnostic biomarker dipicolinic acid (DPA) by detection of fluorescence of the terbium-DPA complex. To gain understanding of total microbial activity, we quantified hydrogen utilization potential of hydrogenase enzymes, which are ubiquitous in subsurface microorganisms, by using a tritium assay. We measured highest cell concentrations of ca. 108 cells g-1 in shallow sediments close to the seafloor. These concentrations are one to two orders of magnitude lower than in most marine continental margin settings [1]. Similar to the global trend [1], cell concentrations decreased with depth according to a power-law function. Endospore concentrations scattered between ca. 105 and 107 cells g-1 sediment at all sites and depths. We could not observe a clear relationship of endospore concentration and sediment depth; instead, it appears to be linked to lithology and total organic carbon content. Bulk Hydrogenase enzyme activity ranged from nmolar to μmolar range of H2 g-1d-1. Similar to previous observations [2], per-cell hydrogen utilization depends on vertical biogeochemical zones, which could be due to the differences in hydrogen utilization requirements/efficiency of the respective metabolic processes such as sulfate reduction, methanogenesis, fermentation etc. Bengal fan is highly dynamic due to channel and levee systems and the sediments are dominated by turbidites, thick sand layers and hemipelagic deposits, which may control biogeochemical zonation. Based on our microbial biomass and activity data, we suggest that the nature, quality and origin of sedimentary material influence the deep subsurface life. [1] Kallmeyer et al., (2012) PNAS 109(40), 16213-16216 [2] Adhikari et al., (2016) Frontiers in Microbiology 7:8

Contrasting styles of large-scale displacement of unconsolidated sand: examples from the early Jurassic Navajo Sandstone on the Colorado Plateau, USA

NASA Astrophysics Data System (ADS)

Bryant, Gerald

2015-04-01

Large-scale soft-sediment deformation features in the Navajo Sandstone have been a topic of interest for nearly 40 years, ever since they were first explored as a criterion for discriminating between marine and continental processes in the depositional environment. For much of this time, evidence for large-scale sediment displacements was commonly attributed to processes of mass wasting. That is, gravity-driven movements of surficial sand. These slope failures were attributed to the inherent susceptibility of dune sand responding to environmental triggers such as earthquakes, floods, impacts, and the differential loading associated with dune topography. During the last decade, a new wave of research is focusing on the event significance of deformation features in more detail, revealing a broad diversity of large-scale deformation morphologies. This research has led to a better appreciation of subsurface dynamics in the early Jurassic deformation events recorded in the Navajo Sandstone, including the important role of intrastratal sediment flow. This report documents two illustrative examples of large-scale sediment displacements represented in extensive outcrops of the Navajo Sandstone along the Utah/Arizona border. Architectural relationships in these outcrops provide definitive constraints that enable the recognition of a large-scale sediment outflow, at one location, and an equally large-scale subsurface flow at the other. At both sites, evidence for associated processes of liquefaction appear at depths of at least 40 m below the original depositional surface, which is nearly an order of magnitude greater than has commonly been reported from modern settings. The surficial, mass flow feature displays attributes that are consistent with much smaller-scale sediment eruptions (sand volcanoes) that are often documented from modern earthquake zones, including the development of hydraulic pressure from localized, subsurface liquefaction and the subsequent escape of fluidized sand toward the unconfined conditions of the surface. The origin of the forces that produced the lateral, subsurface movement of a large body of sand at the other site is not readily apparent. The various constraints on modeling the generation of the lateral force required to produce the observed displacement are considered here, along with photodocumentation of key outcrop relationships.

Mesozoic (Lower Jurassic) red stromatactis limestones from the Southern Alps (Arzo, Switzerland): calcite mineral authigenesis and syneresis-type deformation

NASA Astrophysics Data System (ADS)

Neuweiler, Fritz; Bernoulli, Daniel

2005-02-01

The Broccatello lithological unit (Lower Jurassic, Hettangian to lower parts of Upper Sinemurian) near the village of Arzo (southern Alps, southern Switzerland) is a mound-shaped carbonate deposit that contains patches of red stromatactis limestone. Within the largely bioclastic Broccatello unit, the stromatactis limestone is distinguished by its early-diagenetic cavity system, a relatively fine-grained texture, and an in-situ assemblage of calcified siliceous sponges (various demosponges and hexactinellids). A complex shallow subsurface diagenetic pathway can be reconstructed from sediment petrography in combination with comparative geochemical analysis (carbon and oxygen isotopes; trace and rare earth elements, REE + Y). This pathway includes organic matter transformation, aragonite and skeletal opal dissolution, patchy calcification and lithification, sediment shrinkage, sagging and collapse, partial REE remobilization, and multiple sediment infiltration. These processes occurred under normal-marine, essentially oxic conditions and were independent from local, recurring syn-sedimentary faulting. It is concluded that the stromatactis results from a combination of calcite mineral authigenesis and syneresis-type deformation. The natural stromatactis phenomenon may thus be best explained by maturation processes of particulate polymer gels expected to form in fine-grained carbonate sediments in the shallow subsurface. Conditions favorable for the evolution of stromatactis appear to be particularly frequent during drowning of tropical or subtropical carbonate platforms.

Stress management skills in the subsurface: H2 stress on thermophilic heterotrophs and methanogens

NASA Astrophysics Data System (ADS)

Topcuoglu, B. D.; Holden, J. F.

2017-12-01

Marine hyperthermophilic heterotrophs and methanogens belonging to the Thermococcales and Methanococcales are often found in subsurface environments such as coal and shale beds, marine sediments, and oil reservoirs where they encounter H2 stress conditions. It is important to study the H2 stress survival strategies of these organisms and their cooperation with one another for survival to better understand their biogeochemical impact in hot subsurface environments. In this study, we have shown that H2 inhibition changed the growth kinetics and the transcriptome of Thermococcus paralvinellae. We observed a significant decrease in batch phase growth rates and cell concentrations with high H2 background. Produced metabolite production measurements, RNA-seq analyses of differentially expressed genes and in silico experiments we performed with the T. paralvinellae metabolic model showed that T. paralvinellae produces formate by a formate hydrogenlyase to survive H2 inhibition. We have also shown that H2 limitation caused a significant decrease in batch phase growth rates and methane production rates of the methanogen, Methanocaldococcus jannaschii. H2 stress of both organisms can be ameliorated by syntrophic growth. H2 syntrophy was demonstrated in microcosm incubations for a natural assemblage of Thermococcus and hyperthermophilic methanogens present in hydrothermal fluid samples. This project aims to describe how a hyperthermophilic heterotroph and a hyperthermophilic methanogen eliminate H2 stress and explore cooperation among thermophiles in the hot subsurface.

Bioturbating shrimp alter the structure and diversity of bacterial communities in coastal marine sediments.

PubMed

Laverock, Bonnie; Smith, Cindy J; Tait, Karen; Osborn, A Mark; Widdicombe, Steve; Gilbert, Jack A

2010-12-01

Bioturbation is a key process in coastal sediments, influencing microbially driven cycling of nutrients as well as the physical characteristics of the sediment. However, little is known about the distribution, diversity and function of the microbial communities that inhabit the burrows of infaunal macroorganisms. In this study, terminal-restriction fragment length polymorphism analysis was used to investigate variation in the structure of bacterial communities in sediment bioturbated by the burrowing shrimp Upogebia deltaura or Callianassa subterranea. Analyses of 229 sediment samples revealed significant differences between bacterial communities inhabiting shrimp burrows and those inhabiting ambient surface and subsurface sediments. Bacterial communities in burrows from both shrimp species were more similar to those in surface-ambient than subsurface-ambient sediment (R=0.258, P<0.001). The presence of shrimp was also associated with changes in bacterial community structure in surrounding surface sediment, when compared with sediments uninhabited by shrimp. Bacterial community structure varied with burrow depth, and also between individual burrows, suggesting that the shrimp's burrow construction, irrigation and maintenance behaviour affect the distribution of bacteria within shrimp burrows. Subsequent sequence analysis of bacterial 16S rRNA genes from surface sediments revealed differences in the relative abundance of bacterial taxa between shrimp-inhabited and uninhabited sediments; shrimp-inhabited sediment contained a higher proportion of proteobacterial sequences, including in particular a twofold increase in Gammaproteobacteria. Chao1 and ACE diversity estimates showed that taxon richness within surface bacterial communities in shrimp-inhabited sediment was at least threefold higher than that in uninhabited sediment. This study shows that bioturbation can result in significant structural and compositional changes in sediment bacterial communities, increasing bacterial diversity in surface sediments and resulting in distinct bacterial communities even at depth within the burrow. In an area of high macrofaunal abundance, this could lead to alterations in the microbial transformations of important nutrients at the sediment-water interface.

Active subsurface cellular function in the Baltic Sea Basin, IODP Exp 347

NASA Astrophysics Data System (ADS)

Reese, B. K.; Zinke, L. A.; Bird, J. T.; Lloyd, K. G.; Marshall, I.; Amend, J.; Jørgensen, B. B.

2016-12-01

The Baltic Sea Basin is a unique depositional setting that has experienced periods of glaciation and deglaciation as a result of global temperature fluctuations over the course of several hundred thousand years. This has resulted in laminated sediments formed during periods with strong permanent salinity stratification. The high sedimentation rates (100-500 cm/1000 y) make this an ideal setting to understand the microbial structure of a deep biosphere community in a high-organic matter environment. The responses of deep sediment microbial communities to variations in conditions during and after deposition are poorly understood. Samples were collected through scientific drilling during the International Ocean Discovery Program (IODP) Expedition 347 on board the Greatship Manisha, September-November 2013. We examined the active microbial community structure using the 16S rRNA gene transcript and active functional genes through metatranscriptome sequencing. Major biogeochemical shifts have been observed in response to the depositional history between the limnic, brackish, and marine phases. The microbial community structure in the BSB is diverse and reflective of the unique changes in the geochemical profile. These data further define the existence life in the deep subsurface and the survival mechanisms required for this extreme environment.

The role of certain infauna and vascular plants in the mediation of redox reactions in marine sediments

NASA Technical Reports Server (NTRS)

Hines, Mark E.

1992-01-01

The mechanisms by which certain animals and plants affect redox processes in sediments was examined by studying three environments: (1) subtidal sediments dominated by the deposit-feeding polychaete Heteromastus filiformis; (2) a saltmarsh inhabited by the tall form of Spartina alterniflora; and (3) tropical carbonate sediments inhabited by three species of seagrasses. S-35-sulfide production rates were compared to pool sizes of dissolved sulfide and dissolved iron. In all of the sediments studied, rates of sulfide reduction were enhanced by macroorganisms while the rate of turnover of dissolved sulfide increased. The polychaete enhanced microbial activity and redox cycling primarily by subducting particles of organic matter and oxidized iron during sediment reworking. The Spartina species enhanced anaerobic activity by transporting primarily dissolved organic matter and oxidants. Although the final result of both animal and plant activities was the enhancement of sub-surface cycling of sulfur and iron, decreased dissolved sulfide and increased dissolved iron concentrations, the mechanisms which produced these results differed dramatically.

Evidence for iron-sulfate coupling in salt marsh sediments

NASA Astrophysics Data System (ADS)

Mills, Jennifer; Antler, Gilad; Turchyn, Alexandra

2014-05-01

Organic carbon burial in shallow marine sediments represents an important net sink in the global carbon cycle. Microbially mediated oxidation of organic matter in oxic, suboxic, and anoxic sediments however, prevents the ultimate burial of organic carbon and its removal from the surface of the planet. Although the subsurface transformations of organic carbon have been studied extensively, an enigmatic question remains: when organic matter is deposited, what determines whether it will be buried, reoxidized, or undergo methanogenesis? One hypothesis is that the sulfur cycle, due to the abundance of sulfate in many surface environments, dominates the subsurface oxidation or other fate of organic carbon. However, it has also been suggested that iron may in turn play a key role in determining the behavior of the sulfur cycle. To better understand the controls on these processes, we are using stable isotope and geochemical techniques to explore the microbially mediated oxidation of organic carbon in salt marsh sediments in North Norfolk, UK. In these sediments there is a high supply of organic carbon, iron, and sulfate (from diurnal tidal cycles). Thus these environments may provide insight into the nature of interactions between the carbon, iron, and sulfur cycles. A series of sampling missions was undertaken in the autumn and winter of 2013-2014. In subsurface fluid samples we observe very high ferrous iron concentrations (>1mM), indicative of extended regions of iron reduction (to over 30cm depth). Within these zones of iron reduction we would predict no sulfate reduction, and as expected δ34Ssulfate remains unchanged with depth. However, δ18Osulfate exhibits significant enrichments of up to 5 permil. This decoupling in the sulfur and oxygen isotopes of sulfate is suggestive of a sulfate recycling process in which sulfate is reduced to an intermediate sulfur species and subsequently reoxidized to sulfate. Taken together, these data suggest that microbial assemblages in these salt marsh sediments facilitate a cryptic cycling of sulfur, potentially mediated by iron species in the zone of iron reduction.

CO2 leakage from carbon dioxide capture and storage (CCS) systems affects organic matter cycling in surface marine sediments.

PubMed

Rastelli, Eugenio; Corinaldesi, Cinzia; Dell'Anno, Antonio; Amaro, Teresa; Greco, Silvestro; Lo Martire, Marco; Carugati, Laura; Queirós, Ana M; Widdicombe, Stephen; Danovaro, Roberto

2016-12-01

Carbon dioxide capture and storage (CCS), involving the injection of CO 2 into the sub-seabed, is being promoted worldwide as a feasible option for reducing the anthropogenic CO 2 emissions into the atmosphere. However, the effects on the marine ecosystems of potential CO 2 leakages originating from these storage sites have only recently received scientific attention, and little information is available on the possible impacts of the resulting CO 2 -enriched seawater plumes on the surrounding benthic ecosystem. In the present study, we conducted a 20-weeks mesocosm experiment exposing coastal sediments to CO 2 -enriched seawater (at 5000 or 20,000 ppm), to test the effects on the microbial enzymatic activities responsible for the decomposition and turnover of the sedimentary organic matter in surface sediments down to 15 cm depth. Our results indicate that the exposure to high-CO 2 concentrations reduced significantly the enzymatic activities in the top 5 cm of sediments, but had no effects on subsurface sediment horizons (from 5 to 15 cm depth). In the surface sediments, both 5000 and 20,000 ppm CO 2 treatments determined a progressive decrease over time in the protein degradation (up to 80%). Conversely, the degradation rates of carbohydrates and organic phosphorous remained unaltered in the first 2 weeks, but decreased significantly (up to 50%) in the longer term when exposed at 20,000 ppm of CO 2 . Such effects were associated with a significant change in the composition of the biopolymeric carbon (due to the accumulation of proteins over time in sediments exposed to high-pCO 2 treatments), and a significant decrease (∼20-50% at 5000 and 20,000 ppm respectively) in nitrogen regeneration. We conclude that in areas immediately surrounding an active and long-lasting leak of CO 2 from CCS reservoirs, organic matter cycling would be significantly impacted in the surface sediment layers. The evidence of negligible impacts on the deeper sediments should be considered with caution and further investigated simulating the intrusion of CO 2 from a subsurface source, as occurring during real CO 2 leakages from CCS sites. Copyright © 2016 Elsevier Ltd. All rights reserved.

Spheroidal Carbonaceous Particles (SCPs) as Chronological Markers in Marine Sediments

NASA Astrophysics Data System (ADS)

Thornalley, D.; Rose, N.; Oppo, D.

2016-12-01

Spheroidal carbonaceous particles (SCPs) are a component of fly-ash, the particulate by-product of industrial high-temperature combustion of coal and fuel-oil that is released to the atmosphere with flue-gases. They are morphologically distinct and have no natural sources making them unambiguous markers of contamination from these anthropogenic sources. In naturally accumulating archives, SCPs may be used as a chronological tool as they provide a faithful record of industrial emissions and deposition. While the timing of the first presence of SCP in the 19th century, and the observed sub-surface peak are dependent on factors such as sediment accumulation rates and local industrial history, a rapid increase in SCP inputs in the mid-20thcentury appears to be a global signal corresponding to an acceleration in global electricity demand following the Second World War and the use of fuel-oil in electricity production at an industrial scale for the first time. While this approach has been widely used in lake sediments, it has not been applied to marine sediments, although there is great potential. Improved dating of 19th-20th century marine sediments has particular relevance for developing reconstructions of recent multi-decadal climate and ocean variability, and for studies that aim to place 20thcentury climate change within the context of the last millennium. Here, we present data from three sediment cores from the continental slope south of Iceland to demonstrate the temporal and spatial replicability of the SCP record in the marine environment and compare these data with cores taken from more contaminated areas off the coast of the eastern United States. The improved age model constraints provided by the analysis of SCPs has enabled a more accurate assessment of the timing of recent abrupt climate events recorded in these archives and has thus improved our understanding of likely causal climate mechanisms.

Subsurface North Atlantic warming as a trigger of rapid cooling events: evidence from the early Pleistocene (MIS 31-19)

NASA Astrophysics Data System (ADS)

Hernández-Almeida, I.; Sierro, F.-J.; Cacho, I.; Flores, J.-A.

2015-04-01

Subsurface water column dynamics in the subpolar North Atlantic were reconstructed in order to improve the understanding of the cause of abrupt ice-rafted detritus (IRD) events during cold periods of the early Pleistocene. We used paired Mg / Ca and δ18O measurements of Neogloboquadrina pachyderma (sinistral - sin.), deep-dwelling planktonic foraminifera, to estimate the subsurface temperatures and seawater δ18O from a sediment core from Gardar Drift, in the subpolar North Atlantic. Carbon isotopes of benthic and planktonic foraminifera from the same site provide information about the ventilation and water column nutrient gradient. Mg / Ca-based temperatures and seawater δ18O suggest increased subsurface temperatures and salinities during ice-rafting, likely due to northward subsurface transport of subtropical waters during periods of weaker Atlantic Meridional Overturning Circulation (AMOC). Planktonic carbon isotopes support this suggestion, showing coincident increased subsurface ventilation during deposition of IRD. Subsurface accumulation of warm waters would have resulted in basal warming and break-up of ice-shelves, leading to massive iceberg discharges in the North Atlantic. The release of heat stored at the subsurface to the atmosphere would have helped to restart the AMOC. This mechanism is in agreement with modelling and proxy studies that observe a subsurface warming in the North Atlantic in response to AMOC slowdown during Marine Isotope Stage (MIS) 3.

Anomalous porosity preservation and preferential accumulation of gas hydrate in the Andaman accretionary wedge, NGHP-01 site 17A

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rose, Kelly K.; Johnson, Joel E.; Torres, Marta E.

In addition to well established properties that control the presence or absence of the hydrate stability zone, such as pressure, temperature, and salinity, additional parameters appear to influence the concentration of gas hydrate in host sediments. The stratigraphic record at Site 17A in the Andaman Sea, eastern Indian Ocean, illustrates the need to better understand the role pore-scale phenomena play in the distribution and presence of marine gas hydrates in a variety of subsurface settings. In this paper we integrate field-generated datasets with newly acquired sedimentology, physical property, imaging and geochemical data with mineral saturation and ion activity products ofmore » key mineral phases such as amorphous silica and calcite, to document the presence and nature of secondary precipitates that contributed to anomalous porosity preservation at Site 17A in the Andaman Sea. This study demonstrates the importance of grain-scale subsurface heterogeneities in controlling the occurrence and distribution of concentrated gas hydrate accumulations in marine sediments, and document the importance that increased permeability and enhanced porosity play in supporting gas concentrations sufficient to support gas hydrate formation. The grain scale relationships between porosity, permeability, and gas hydrate saturation documented at Site 17A likely offer insights into what may control the occurrence and distribution of gas hydrate in other sedimentary settings.« less

Novel microbial assemblages inhabiting crustal fluids within mid-ocean ridge flank subsurface basalt

PubMed Central

Jungbluth, Sean P; Bowers, Robert M; Lin, Huei-Ting; Cowen, James P; Rappé, Michael S

2016-01-01

Although little is known regarding microbial life within our planet's rock-hosted deep subseafloor biosphere, boreholes drilled through deep ocean sediment and into the underlying basaltic crust provide invaluable windows of access that have been used previously to document the presence of microorganisms within fluids percolating through the deep ocean crust. In this study, the analysis of 1.7 million small subunit ribosomal RNA genes amplified and sequenced from marine sediment, bottom seawater and basalt-hosted deep subseafloor fluids that span multiple years and locations on the Juan de Fuca Ridge flank was used to quantitatively delineate a subseafloor microbiome comprised of distinct bacteria and archaea. Hot, anoxic crustal fluids tapped by newly installed seafloor sampling observatories at boreholes U1362A and U1362B contained abundant bacterial lineages of phylogenetically unique Nitrospirae, Aminicenantes, Calescamantes and Chloroflexi. Although less abundant, the domain Archaea was dominated by unique, uncultivated lineages of marine benthic group E, the Terrestrial Hot Spring Crenarchaeotic Group, the Bathyarchaeota and relatives of cultivated, sulfate-reducing Archaeoglobi. Consistent with recent geochemical measurements and bioenergetic predictions, the potential importance of methane cycling and sulfate reduction were imprinted within the basalt-hosted deep subseafloor crustal fluid microbial community. This unique window of access to the deep ocean subsurface basement reveals a microbial landscape that exhibits previously undetected spatial heterogeneity. PMID:26872042

Complex community of nitrite-dependent anaerobic methane oxidation bacteria in coastal sediments of the Mai Po wetland by PCR amplification of both 16S rRNA and pmoA genes.

PubMed

Chen, Jing; Zhou, Zhichao; Gu, Ji-Dong

2015-02-01

In the present work, both 16S rRNA and pmoA gene-based PCR primers were employed successfully to study the diversity and distribution of n-damo bacteria in the surface and lower layer sediments at the coastal Mai Po wetland. The occurrence of n-damo bacteria in both the surface and subsurface sediments with high diversity was confirmed in this study. Unlike the two other known n-damo communities from coastal areas, the pmoA gene-amplified sequences in the present work clustered not only with some freshwater subclusters but also within three newly erected marine subclusters mostly, indicating the unique niche specificity of n-damo bacteria in this wetland. Results suggested vegetation affected the distribution and community structures of n-damo bacteria in the sediments and n-damo could coexist with sulfate-reducing methanotrophs in the coastal ecosystem. Community structures of the Mai Po n-damo bacteria based on 16S rRNA gene were different from those of either the freshwater or the marine. In contrast, structures of the Mai Po n-damo communities based on pmoA gene grouped with the marine ones and were clearly distinguished from the freshwater ones. The abundance of n-damo bacteria at this wetland was quantified using 16S rRNA gene PCR primers to be 2.65-6.71 × 10(5) copies/g dry sediment. Ammonium and nitrite strongly affected the community structures and distribution of n-damo bacteria in the coastal Mai Po wetland sediments.

Comparative Genomics Analysis and Phenotypic Characterization of Shewanella putrefaciens W3-18-1: Anaerobic Respiration, Bacterial Microcompartments, and Lateral Flagella

DOE Office of Scientific and Technical Information (OSTI.GOV)

Qiu, D.; Tu, Q.; He, Zhili

2010-05-17

Respiratory versatility and psychrophily are the hallmarks of Shewanella. The ability to utilize a wide range of electron acceptors for respiration is due to the large number of c-type cytochrome genes present in the genome of Shewanella strains. More recently the dissimilatory metal reduction of Shewanella species has been extensively and intensively studied for potential applications in the bioremediation of radioactive wastes of groundwater and subsurface environments. Multiple Shewanella genome sequences are now available in the public databases (Fredrickson et al., 2008). Most of the sequenced Shewanella strains were isolated from marine environments and this genus was believed to bemore » of marine origin (Hau and Gralnick, 2007). However, the well-characterized model strain, S. oneidensis MR-1, was isolated from the freshwater lake sediment of Lake Oneida, New York (Myers and Nealson, 1988) and similar bacteria have also been isolated from other freshwater environments (Venkateswaran et al., 1999). Here we comparatively analyzed the genome sequence and physiological characteristics of S. putrefaciens W3-18-1 and S. oneidensis MR-1, isolated from the marine and freshwater lake sediments, respectively. The anaerobic respirations, carbon source utilization, and cell motility have been experimentally investigated. Large scale horizontal gene transfers have been revealed and the genetic divergence between these two strains was considered to be critical to the bacterial adaptation to specific habitats, freshwater or marine sediments.« less

Shallow geology, sea-floor texture, and physiographic zones of Vineyard and western Nantucket Sounds, Massachusetts

USGS Publications Warehouse

Baldwin, Wayne E.; Foster, David S.; Pendleton, Elizabeth A.; Barnhardt, Walter A.; Schwab, William C.; Andrews, Brian D.; Ackerman, Seth D.

2016-09-02

Geologic, sediment texture, and physiographic zone maps characterize the sea floor of Vineyard and western Nantucket Sounds, Massachusetts. These maps were derived from interpretations of seismic-reflection profiles, high-resolution bathymetry, acoustic-backscatter intensity, bottom photographs/video, and surficial sediment samples collected within the 494-square-kilometer study area. Interpretations of seismic stratigraphy and mapping of glacial and Holocene marine units provided a foundation on which the surficial maps were created. This mapping is a result of a collaborative effort between the U.S. Geological Survey and the Massachusetts Office of Coastal Zone Management to characterize the surface and subsurface geologic framework offshore of Massachusetts.

Relative importance of methylotrophic methanogenesis in sediments of the Western Mediterranean Sea

NASA Astrophysics Data System (ADS)

Zhuang, Guang-Chao; Heuer, Verena B.; Lazar, Cassandre S.; Goldhammer, Tobias; Wendt, Jenny; Samarkin, Vladimir A.; Elvert, Marcus; Teske, Andreas P.; Joye, Samantha B.; Hinrichs, Kai-Uwe

2018-03-01

Microbial production of methane is an important terminal metabolic process during organic matter degradation in marine sediments. It is generally acknowledged that hydrogenotrophic and acetoclastic methanogenesis constitute the dominant pathways of methane production; the importance of methanogenesis from methylated compounds remains poorly understood. We conducted various biogeochemical and molecular genetic analyses to characterize substrate availability, rates of methanogenesis, and methanogen community composition, and further evaluated the contribution of different substrates and pathways for methane production in deltaic surface and subsurface sediments of the Western Mediterranean Sea. Major substrates representing three methanogenic pathways, including H2, acetate, and methanol, trimethylamine (TMA), and dimethylsulfide (DMS), were detected in the pore waters and sediments, and exhibited variability over depth and between sites. In accompanying incubation experiments, methanogenesis rates from various 14C labeled substrates varied as well, suggesting that environmental factors, such as sulfate concentration and organic matter quality, could significantly influence the relative importance of individual pathway. In particular, methylotrophic and hydrogenotrophic methanogenesis contributed to the presence of micromolar methane concentrations in the sulfate reduction zone, with methanogenesis from methanol accounting for up to 98% of the total methane production in the topmost surface sediment. In the sulfate-depleted zone, hydrogenotrophic methanogenesis was the dominant methanogenic pathway (67-98%), and enhanced methane production from acetate was observed in organic-rich sediment (up to 31%). Methyl coenzyme M reductase gene (mcrA) analysis revealed that the composition of methanogenic communities was generally consistent with the distribution of methanogenic activity from different substrates. This study provides the first quantitative assessment of methylotrophic methanogenesis in marine sediments and has important implications for marine methane cycling. The occurrence of methylotrophic methanogenesis in surface sediments could fuel the anaerobic oxidation of methane (AOM) in the shallow sulfate reduction zone. Release of methane produced from methylotrophic methanogenesis could be a source of methane efflux to the water column, thus influencing the benthic methane budgets.

Sedimentary silicon isotope indicates the Kuroshio subsurface upwelling in the East China Sea

NASA Astrophysics Data System (ADS)

Zhao, Y.; Yang, S.; Su, N.

2017-12-01

The Kuroshio as the western boundary current of the North Pacific subtropical circulation, originates from east of the Philippine Islands, and flows northeastward along the eastern coast of Taiwan. It's subsurface water intrudes the East China Sea (ECS) and forms a typical upwelling on the inner shelf, which may play an important role in the material and heat transport, biogeochemical process and marine ecosystem of the ECS.To date, most previous studies on the Kuroshio subsurface upwelling focuse on the seasonal and interannual variations, and few researches touch on the upwelling evolution in the geologic past. In this study, eight short sediment cores were taken along the ECS inner shelf (upwelling area), which allow us to reconstruct the upwelling history over the last several hundred years. Although conventional indexes of oceanographic changes, such as salinity, temperature and hydrogen and oxygen isotope, provide valuable constraints on the modern oceanic circulation and water mass movements, how to reconstruct them from geologic records is always a challenging work. In this contribution, we present the data of stable silicon isotope, biogenic opal, diatom assemblages, element geochemistry and stable carbon and nitrogen isotopes of these core sediments, and aim to decipher the Kuroshio subsurface upwelling history on the ECS shelf. We will also illustrate the difference in δ30Si signals between small (<30 um) and large (>150 um) diatom fractions, and test whether it is an effective indicator for paleo-upwelling intensity.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cox, D.L.

The Berea Sandstone is a widely recognized producer of oil and gas in the Appalachian basin. Subsurface mapping, core analysis, and production data from producing wells have been evaluated in west-central West Virginia, where the Berea Sandstone represents a wide range of nearshore and coastal environments. Fluvial system deposits are found in southern Jackson County as channel sands (Gay-Fink) and adjacent deltaic facies. Coastal sediments were deposited to the north as intertidal shoals, tidal flats, and coarse-grained tidal-creek point bars. Marine shelf sands are found to the west.

Flavins in Marine Sediments: A Potentially Ubiquitous Intermediary In Microbial Electron Transfer

NASA Astrophysics Data System (ADS)

Monteverde, D.; Sylvan, J. B.; Suffridge, C.; Berelson, W.; Sanudo-Wilhelmy, S. A.; Baronas, J. J.

2016-12-01

The flavins (riboflavin, flavin mononucleotide [FMN], flavin adenine dinucleotide [FA­­D]) are a class of organic compounds synthesized by organisms to assist in redox reactions. They represent the largest class of required coenzymes, rivaled only by iron in the number of unique enzymes they bind. In addition to internal use, cultured metal-reducing organisms such as Shewanella and Geobacter have been known to release flavins into the extracellular pool to aid in external electron transfer. So called "electron shuttles" can allow organisms to overcome unfavorable geochemical zonation by transferring electrons onto a relatively distant insoluble acceptor. Despite the extensive culture work, flavins have not been systematically measured in the environment. Here we present the first set of flavin profiles from the water column and pore waters of a marine environment. Samples were taken from San Pedro Basin, a 900 meter deep, silled basin, with high seasonal inputs of organic carbon, low bottom water oxygen concentrations, and laminated sediments - making it ideal to explore variations in sediment geochemical zonations. Dissolved flavin concentrations in the water column and pore waters collected from two cores were preconcentrated via solid phase extraction and measured via LC/MS. Flavin profiles are compared to a suite of geochemical parameters as well as sediment microbial 16s rRNA data. Preliminary results show that FMN is typically an order of magnitude higher concentration than riboflavin (800-300pM versus 100-50pM). Porewater concentrations were elevated over water column values for all analytes (ranging from 100-2000pM) and displayed an increasing trend with depth in both cores. This increasing trend correlated with a decrease in dissolved Fe (ranging from 160 µM in surface sediments to 65 µM at 40 cm) and shifts in microbial diversity from sediments shallower than 5 cm depth dominated by Delta- and Gammaproteobacteria to subsurface sediments dominated by Chloroflexi and Archaea at 20-40 cm. These first environmental profiles of flavins in the marine environmental support previous observations of the importance of electron transfer intermediaries in culture and point to an important role for flavins in modern marine microbial communities.

Archaea of the Miscellaneous Crenarchaeotal Group are abundant, diverse and widespread in marine sediments

PubMed Central

Kubo, Kyoko; Lloyd, Karen G; F Biddle, Jennifer; Amann, Rudolf; Teske, Andreas; Knittel, Katrin

2012-01-01

Members of the highly diverse Miscellaneous Crenarchaeotal Group (MCG) are globally distributed in various marine and continental habitats. In this study, we applied a polyphasic approach (rRNA slot blot hybridization, quantitative PCR (qPCR) and catalyzed reporter deposition FISH) using newly developed probes and primers for the in situ detection and quantification of MCG crenarchaeota in diverse types of marine sediments and microbial mats. In general, abundance of MCG (cocci, 0.4 μm) relative to other archaea was highest (12–100%) in anoxic, low-energy environments characterized by deeper sulfate depletion and lower microbial respiration rates (P=0.06 for slot blot and P=0.05 for qPCR). When studied in high depth resolution in the White Oak River estuary and Hydrate Ridge methane seeps, changes in MCG abundance relative to total archaea and MCG phylogenetic composition did not correlate with changes in sulfate reduction or methane oxidation with depth. In addition, MCG abundance did not vary significantly (P>0.1) between seep sites (with high rates of methanotrophy) and non-seep sites (with low rates of methanotrophy). This suggests that MCG are likely not methanotrophs. MCG crenarchaeota are highly diverse and contain 17 subgroups, with a range of intragroup similarity of 82 to 94%. This high diversity and widespread distribution in subsurface sediments indicates that this group is globally important in sedimentary processes. PMID:22551871

Regional-scale drivers of marine nematode distribution in Southern Ocean continental shelf sediments

NASA Astrophysics Data System (ADS)

Hauquier, Freija; Verleyen, Elie; Tytgat, Bjorn; Vanreusel, Ann

2018-07-01

Many marine meiofauna taxa seem to possess cosmopolitan species distributions, despite their endobenthic lifestyle and restricted long-distance dispersal capacities. In light of this paradox we used a metacommunity framework to study spatial turnover in free-living nematode distribution and assess the importance of local environmental conditions in explaining differences between communities in surface and subsurface sediments of the Southern Ocean continental shelf. We analysed nematode community structure in two sediment layers (0-3 cm and 3-5 cm) of locations maximum 2400 km apart. We first focused on a subset of locations to evaluate whether the genus level is sufficiently taxonomically fine-grained to study large-scale patterns in nematode community structure. We subsequently used redundancy and variation partitioning analyses to quantify the unique and combined effects of local environmental conditions and spatial descriptors on genus-level community composition. Macroecological patterns in community structure were highly congruent at the genus and species level. Nematode community composition was highly divergent between both depth strata, likely as a result of local abiotic conditions. Variation in community structure between the different regions largely stemmed from turnover (i.e. genus/species replacement) rather than nestedness (i.e. genus/species loss). The level of turnover among communities increased with geographic distance and was more pronounced in subsurface layers compared to surface sediments. Variation partitioning analysis revealed that both environmental and spatial predictors significantly explained variation in community structure. Moreover, the shared fraction of both sets of variables was high, which suggested a substantial amount of spatially structured environmental variation. Additionally, the effect of space independent of environment was much higher than the effect of environment independent of space, which shows the importance of including spatial descriptors in meiofauna and nematode community ecology. Large-scale assessment of free-living nematode diversity and abundance in the Southern Ocean shelf zone revealed strong horizontal and vertical spatial structuring in response to local environmental conditions, in combination with (most likely) dispersal limitation.

Fungal and Prokaryotic Activities in the Marine Subsurface Biosphere at Peru Margin and Canterbury Basin Inferred from RNA-Based Analyses and Microscopy

PubMed Central

Pachiadaki, Maria G.; Rédou, Vanessa; Beaudoin, David J.; Burgaud, Gaëtan; Edgcomb, Virginia P.

2016-01-01

The deep sedimentary biosphere, extending 100s of meters below the seafloor harbors unexpected diversity of Bacteria, Archaea, and microbial eukaryotes. Far less is known about microbial eukaryotes in subsurface habitats, albeit several studies have indicated that fungi dominate microbial eukaryotic communities and fungal molecular signatures (of both yeasts and filamentous forms) have been detected in samples as deep as 1740 mbsf. Here, we compare and contrast fungal ribosomal RNA gene signatures and whole community metatranscriptomes present in sediment core samples from 6 and 95 mbsf from Peru Margin site 1229A and from samples from 12 and 345 mbsf from Canterbury Basin site U1352. The metatranscriptome analyses reveal higher relative expression of amino acid and peptide transporters in the less nutrient rich Canterbury Basin sediments compared to the nutrient rich Peru Margin, and higher expression of motility genes in the Peru Margin samples. Higher expression of genes associated with metals transporters and antibiotic resistance and production was detected in Canterbury Basin sediments. A poly-A focused metatranscriptome produced for the Canterbury Basin sample from 345 mbsf provides further evidence for active fungal communities in the subsurface in the form of fungal-associated transcripts for metabolic and cellular processes, cell and membrane functions, and catalytic activities. Fungal communities at comparable depths at the two geographically separated locations appear dominated by distinct taxa. Differences in taxonomic composition and expression of genes associated with particular metabolic activities may be a function of sediment organic content as well as oceanic province. Microscopic analysis of Canterbury Basin sediment samples from 4 and 403 mbsf produced visualizations of septate fungal filaments, branching fungi, conidiogenesis, and spores. These images provide another important line of evidence supporting the occurrence and activity of fungi in the deep subseafloor biosphere. PMID:27375571

Fungal and Prokaryotic Activities in the Marine Subsurface Biosphere at Peru Margin and Canterbury Basin Inferred from RNA-Based Analyses and Microscopy.

PubMed

Pachiadaki, Maria G; Rédou, Vanessa; Beaudoin, David J; Burgaud, Gaëtan; Edgcomb, Virginia P

2016-01-01

The deep sedimentary biosphere, extending 100s of meters below the seafloor harbors unexpected diversity of Bacteria, Archaea, and microbial eukaryotes. Far less is known about microbial eukaryotes in subsurface habitats, albeit several studies have indicated that fungi dominate microbial eukaryotic communities and fungal molecular signatures (of both yeasts and filamentous forms) have been detected in samples as deep as 1740 mbsf. Here, we compare and contrast fungal ribosomal RNA gene signatures and whole community metatranscriptomes present in sediment core samples from 6 and 95 mbsf from Peru Margin site 1229A and from samples from 12 and 345 mbsf from Canterbury Basin site U1352. The metatranscriptome analyses reveal higher relative expression of amino acid and peptide transporters in the less nutrient rich Canterbury Basin sediments compared to the nutrient rich Peru Margin, and higher expression of motility genes in the Peru Margin samples. Higher expression of genes associated with metals transporters and antibiotic resistance and production was detected in Canterbury Basin sediments. A poly-A focused metatranscriptome produced for the Canterbury Basin sample from 345 mbsf provides further evidence for active fungal communities in the subsurface in the form of fungal-associated transcripts for metabolic and cellular processes, cell and membrane functions, and catalytic activities. Fungal communities at comparable depths at the two geographically separated locations appear dominated by distinct taxa. Differences in taxonomic composition and expression of genes associated with particular metabolic activities may be a function of sediment organic content as well as oceanic province. Microscopic analysis of Canterbury Basin sediment samples from 4 and 403 mbsf produced visualizations of septate fungal filaments, branching fungi, conidiogenesis, and spores. These images provide another important line of evidence supporting the occurrence and activity of fungi in the deep subseafloor biosphere.

A ground penetrating radar investigation of a glacial-marine ice- contact delta, Pineo Ridge, eastern coastal Maine

USGS Publications Warehouse

Tary, A.K.; Duncan, M. FitzGerald; Weddle, T.K.

2007-01-01

In eastern coastal Maine, many flat-topped landforms, often identified as glacial-marine deltas, are cultivated for blueberry production. These agriculturally valuable features are not exploited for aggregate resources, severely limiting stratigraphic exposure. Coring is often forbidden; where permissible, coarse-grained surficial sediments make coring and sediment retrieval difficult. Ground penetrating radar (GPR) has become an invaluable tool in an ongoing study of the otherwise inaccessible subsurface morphology in this region and provides a means of detailing the large-scale sedimentary structures comprising these features. GPR studies allow us to reassess previous depositional interpretations and to develop alternative developmental models. The work presented here focuses on Pineo Ridge, a large, flat-topped ice-marginal glacial-marine delta complex with a strong linear trend and two distinct landform zones, informally termed East Pineo and West Pineo. Previous workers have described each zone separately due to local morphological variation. Our GPR work further substantiates this geomorphic differentiation. East Pineo developed as a series of deltaic lobes prograding southward from an ice-contact margin during the local marine highstand. GPR data do not suggest postdepositional modification by ice-margin re-advance. We suggest that West Pineo has a more complex, two-stage depositional history. The southern section of the feature consists of southward-prograding deltaic lobes deposited during retreat of the Laurentide ice margin, with later erosional modification during marine regression. The northern section of West Pineo formed as a series of northward-prograd- ing deltaic lobes as sediment-laden meltwater may have been diverted by the existing deposits of the southern section of West Pineo. ?? 2007 The Geological Society of America. All rights reserved.

Microplastics in Arctic polar waters: the first reported values of particles in surface and sub-surface samples

PubMed Central

Lusher, Amy L.; Tirelli, Valentina; O’Connor, Ian; Officer, Rick

2015-01-01

Plastic, as a form of marine litter, is found in varying quantities and sizes around the globe from surface waters to deep-sea sediments. Identifying patterns of microplastic distribution will benefit an understanding of the scale of their potential effect on the environment and organisms. As sea ice extent is reducing in the Arctic, heightened shipping and fishing activity may increase marine pollution in the area. Microplastics may enter the region following ocean transport and local input, although baseline contamination measurements are still required. Here we present the first study of microplastics in Arctic waters, south and southwest of Svalbard, Norway. Microplastics were found in surface (top 16 cm) and sub-surface (6 m depth) samples using two independent techniques. Origins and pathways bringing microplastic to the Arctic remain unclear. Particle composition (95% fibres) suggests they may either result from the breakdown of larger items (transported over large distances by prevailing currents, or derived from local vessel activity), or input in sewage and wastewater from coastal areas. Concurrent observations of high zooplankton abundance suggest a high probability for marine biota to encounter microplastics and a potential for trophic interactions. Further research is required to understand the effects of microplastic-biota interaction within this productive environment. PMID:26446348

Microplastics in Arctic polar waters: the first reported values of particles in surface and sub-surface samples

NASA Astrophysics Data System (ADS)

Lusher, Amy L.; Tirelli, Valentina; O'Connor, Ian; Officer, Rick

2015-10-01

Plastic, as a form of marine litter, is found in varying quantities and sizes around the globe from surface waters to deep-sea sediments. Identifying patterns of microplastic distribution will benefit an understanding of the scale of their potential effect on the environment and organisms. As sea ice extent is reducing in the Arctic, heightened shipping and fishing activity may increase marine pollution in the area. Microplastics may enter the region following ocean transport and local input, although baseline contamination measurements are still required. Here we present the first study of microplastics in Arctic waters, south and southwest of Svalbard, Norway. Microplastics were found in surface (top 16 cm) and sub-surface (6 m depth) samples using two independent techniques. Origins and pathways bringing microplastic to the Arctic remain unclear. Particle composition (95% fibres) suggests they may either result from the breakdown of larger items (transported over large distances by prevailing currents, or derived from local vessel activity), or input in sewage and wastewater from coastal areas. Concurrent observations of high zooplankton abundance suggest a high probability for marine biota to encounter microplastics and a potential for trophic interactions. Further research is required to understand the effects of microplastic-biota interaction within this productive environment.

Microplastics in Arctic polar waters: the first reported values of particles in surface and sub-surface samples.

PubMed

Lusher, Amy L; Tirelli, Valentina; O'Connor, Ian; Officer, Rick

2015-10-08

Plastic, as a form of marine litter, is found in varying quantities and sizes around the globe from surface waters to deep-sea sediments. Identifying patterns of microplastic distribution will benefit an understanding of the scale of their potential effect on the environment and organisms. As sea ice extent is reducing in the Arctic, heightened shipping and fishing activity may increase marine pollution in the area. Microplastics may enter the region following ocean transport and local input, although baseline contamination measurements are still required. Here we present the first study of microplastics in Arctic waters, south and southwest of Svalbard, Norway. Microplastics were found in surface (top 16 cm) and sub-surface (6 m depth) samples using two independent techniques. Origins and pathways bringing microplastic to the Arctic remain unclear. Particle composition (95% fibres) suggests they may either result from the breakdown of larger items (transported over large distances by prevailing currents, or derived from local vessel activity), or input in sewage and wastewater from coastal areas. Concurrent observations of high zooplankton abundance suggest a high probability for marine biota to encounter microplastics and a potential for trophic interactions. Further research is required to understand the effects of microplastic-biota interaction within this productive environment.

Homoacetogenesis in Deep-Sea Chloroflexi, as Inferred by Single-Cell Genomics, Provides a Link to Reductive Dehalogenation in Terrestrial Dehalococcoidetes.

PubMed

Sewell, Holly L; Kaster, Anne-Kristin; Spormann, Alfred M

2017-12-19

The deep marine subsurface is one of the largest unexplored biospheres on Earth and is widely inhabited by members of the phylum Chloroflexi In this report, we investigated genomes of single cells obtained from deep-sea sediments of the Peruvian Margin, which are enriched in such Chloroflexi 16S rRNA gene sequence analysis placed two of these single-cell-derived genomes (DscP3 and Dsc4) in a clade of subphylum I Chloroflexi which were previously recovered from deep-sea sediment in the Okinawa Trough and a third (DscP2-2) as a member of the previously reported DscP2 population from Peruvian Margin site 1230. The presence of genes encoding enzymes of a complete Wood-Ljungdahl pathway, glycolysis/gluconeogenesis, a Rhodobacter nitrogen fixation (Rnf) complex, glyosyltransferases, and formate dehydrogenases in the single-cell genomes of DscP3 and Dsc4 and the presence of an NADH-dependent reduced ferredoxin:NADP oxidoreductase (Nfn) and Rnf in the genome of DscP2-2 imply a homoacetogenic lifestyle of these abundant marine Chloroflexi We also report here the first complete pathway for anaerobic benzoate oxidation to acetyl coenzyme A (CoA) in the phylum Chloroflexi (DscP3 and Dsc4), including a class I benzoyl-CoA reductase. Of remarkable evolutionary significance, we discovered a gene encoding a formate dehydrogenase (FdnI) with reciprocal closest identity to the formate dehydrogenase-like protein (complex iron-sulfur molybdoenzyme [CISM], DET0187) of terrestrial Dehalococcoides/Dehalogenimonas spp. This formate dehydrogenase-like protein has been shown to lack formate dehydrogenase activity in Dehalococcoides/Dehalogenimonas spp. and is instead hypothesized to couple HupL hydrogenase to a reductive dehalogenase in the catabolic reductive dehalogenation pathway. This finding of a close functional homologue provides an important missing link for understanding the origin and the metabolic core of terrestrial Dehalococcoides/Dehalogenimonas spp. and of reductive dehalogenation, as well as the biology of abundant deep-sea Chloroflexi IMPORTANCE The deep marine subsurface is one of the largest unexplored biospheres on Earth and is widely inhabited by members of the phylum Chloroflexi In this report, we investigated genomes of single cells obtained from deep-sea sediments and provide evidence for a homacetogenic lifestyle of these abundant marine Chloroflexi Moreover, genome signature and key metabolic genes indicate an evolutionary relationship between these deep-sea sediment microbes and terrestrial, reductively dehalogenating Dehalococcoides . Copyright © 2017 Sewell et al.

Mineral-Association and Activity of Bacteria and Archaea in the Deep Subsurface South Pacific Gyre Sediment

NASA Astrophysics Data System (ADS)

Steele, J. A.; Dekas, A. E.; Harrison, B. K.; Morono, Y.; Inagaki, F.; Ziebis, W.; Orphan, V. J.

2012-12-01

Although the subsurface biosphere is now recognized as an important reservoir of life on our planet, until recently the microbial community beneath open-ocean oligotrophic gyres (making up the majority of the seafloor) has just begun to be studied in detail. IODP Expedition 329 and the KNOX-022RR site survey cruise have taken some of the first steps at characterizing the microbial community beneath the South Pacific Gyre, a region with low organic carbon burial rates (10-8 and 10-10 moles C cm-1 yr-1), deep oxygen penetration (sediments are oxidized to the basement), and low prokaryotic cell counts (106 cells cm-3 to <103 cells cm-3). In these sediments, the dominant fraction of organic carbon may be aggregated or adsorbed to minerals, suggesting that microbes that are able to grow on the minerals may create potential "hotspots" of activity. In this study, we performed magnetic separation on oligotrophic sediment samples and examined the bacterial and archaeal communities using 16S rRNA tag sequencing. To determine if the mineral-associated cells were autotrophic and/or utilizing nitrate, we performed long-term (20 month) incubations with 13CO2 and 15NO3- from sediment taken at depths ~2-70 mbsf beneath the oligotrophic gyre and outside of the oligotrophic gyre (IODP Exp. 329 stations U1368-U1371). Subsequently we used the DNA stain SYBR Green I, and CARD-FISH-NanoSIMS to identify cells which were actively taking up the isotopic label. We then used SEM-EDS to identify the mineral particle composition. Preliminary results found the magnetic fraction in oligotrophic sediment (KNOX-022RR station SPG-5) from 1.2-2.6 mbsf showed a greater diversity of both bacteria and archaea. OTUs from Chloroflexi groups SO85 and SAR202 were dominant in the magnetic fraction. Firmicutes, Bacteroidetes, δ-Proteobacteria, Verrucomicrobia, Deferribacteres, WS3, OP10, and OP1 OTUs were found only in the magnetic fraction. Crenarchaeal OTUs from Marine Benthic Group B and Marine Group I (Thaumarchaea) and Euryarchaeal OTUs from Methanomicrobia and Thermococcus groups were found in the magnetic fraction with Marine Group I Crenarchaea showing the highest archaeal abundance. The higher diversity in the magnetic fraction suggests that bacteria and archaea associated with Fe-rich or Mn-rich minerals may be able to exploit a wider array of niches. Comparing sediment from within and outside the gyre, the more productive sediments had greater total cell numbers; however, we observed an increase in attached cells in the relatively Fe and P-rich samples (the heavy fraction) in the oligotrophic sediments (IODP Exp. 329 station U1368 and KNOX-022RR station SPG-6), suggesting a possible preference for attachment to Fe and P-rich particles.

Characterization and consequences of intermittent sediment oxygenation by macrofauna: interpretation of high-resolution data sets

NASA Astrophysics Data System (ADS)

Meile, C. D.; Dwyer, I.; Zhu, Q.; Polerecky, L.; Volkenborn, N.

2017-12-01

Mineralization of organic matter in marine sediments leads to the depletion of oxygen, while activities of infauna introduce oxygenated seawater to the subsurface. In permeable sediments solutes can be transported from animals and their burrows into the surrounding sediment through advection over several centimeters. The intermittency of pumping leads to a spatially heterogeneous distribution of oxidants, with the temporal dynamics depending on sediment reactivity and activity patterns of the macrofauna. Here, we present results from a series of experiments in which these dynamics are studied at high spatial and temporal resolution using planar optodes. From O2, pH and pCO2 optode data, we quantify rates of O2 consumption and dissolved inorganic carbon production, as well alkalinity dynamics, with millimeter-scale resolution. Simulating intermittent irrigation by imposed pumping patterns in thin aquaria, we derive porewater flow patterns, which together with the production and consumption rates cause the chemical distributions and the establishment of reaction fronts. Our analysis thus establishes a quantitative connection between the locally dynamic redox conditions relevant for biogeochemical transformations and macroscopic observations commonly made with sediment cores.

North Pacific deglacial hypoxic events linked to abrupt ocean warming

USGS Publications Warehouse

Praetorius, Summer K; Mix, Alan C.; Davies, Maureen H.; Wolhowe, Matthew D; Addison, Jason A.; Prahl, Frederick G

2015-01-01

Marine sediments from the North Pacific document two episodes of expansion and strengthening of the subsurface oxygen minimum zone (OMZ) accompanied by seafloor hypoxia during the last deglacial transition1, 2, 3, 4. The mechanisms driving this hypoxia remain under debate1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11. We present a new high-resolution alkenone palaeotemperature reconstruction from the Gulf of Alaska that reveals two abrupt warming events of 4–5 degrees Celsius at the onset of the Bølling and Holocene intervals that coincide with sudden shifts to hypoxia at intermediate depths. The presence of diatomaceous laminations and hypoxia-tolerant benthic foraminiferal species, peaks in redox-sensitive trace metals12, 13, and enhanced 15N/14N ratio of organic matter13, collectively suggest association with high export production. A decrease in 18O/16O values of benthic foraminifera accompanying the most severe deoxygenation event indicates subsurface warming of up to about 2 degrees Celsius. We infer that abrupt warming triggered expansion of the North Pacific OMZ through reduced oxygen solubility and increased marine productivity via physiological effects; following initiation of hypoxia, remobilization of iron from hypoxic sediments could have provided a positive feedback on ocean deoxygenation through increased nutrient utilization and carbon export. Such a biogeochemical amplification process implies high sensitivity of OMZ expansion to warming.

Ocean Nitrogen Isotopic Change in the Early Eocene

NASA Astrophysics Data System (ADS)

Kast, E.; Stolper, D. A.; Higgins, J. A.; Ren, H. A.; Wang, X. T.; Sigman, D. M.

2017-12-01

The long term variability of the marine nitrogen (N) cycle is an open question. The Cenozoic provides a well-studied framework for investigating the marine N cycle over long time scales and across large climate transitions. However, only sparse bulk Cenozoic sediment δ15N data exist, the utility of which for reconstructing environmental conditions is unclear. We present a record of foraminifera-bound organic matter δ15N from the Paleocene to late Eocene. At three distant sites, foraminifera-bound δ15N decreases dramatically between 56 Ma and 50 Ma: from 14‰ to 2‰ in the northwest Pacific (ODP site 1209), from 12‰ to 4‰ in the southeast Atlantic (ODP site 1263), and from 9‰ to 4‰ in the northwest Atlantic (IODP site U1409). This foraminifera-bound δ15N change is on par, if not greater, than the largest changes that have been observed in bulk sediment δ15N over the last 600 million years. The shared change among the sites implies a change in mean δ15N of oceanic fixed N, which is thought to be sensitive to the ratio of water column to sedimentary denitrification, with a higher δ15N reflecting a greater proportion of denitrification occurring in the water column. Today, water column denitrification occurs in the shallow subsurface, in regions where these waters are suboxic. Thus, the δ15N decrease may reflect a slowing of water column denitrification, which can be generated by a decline in shallow subsurface suboxia. A key factor in the extent of shallow subsurface suboxia is the amount of "preformed oxygen," the initial concentration of dissolved O2 in the water that flows from the surface into the shallow subsurface: a decline in suboxia would require a rise in preformed oxygen from 56 to 50 Ma. The δ15N decline occurs before the onset of cooling in the Eocene, eliminating global temperature change as the driver of increased preformed oxygen. Instead we favor explanations that involve tectonically driven changes in continental configuration and shallow and mid-depth ocean bathymetry. Indeed, the δ15N decline appears coincident with the initiation of bathymetric effects from the collision of India with Asia. This category of explanation is consistent with the overlap of the δ15N decline with the previously identified increase in marine barite δ34S at 51 Ma.

Estimating sedimentation rates and sources in a partially urbanized catchment using caesium-137

NASA Astrophysics Data System (ADS)

Ormerod, L. M.

1998-06-01

While there has been increased interest in determining sedimentation rates and sources in agricultural and forested catchments in recent years, there have been few studies dealing with urbanized catchments. A study of sedimentation rates and sources within channel and floodplain deposits of a partially urbanized catchment has been undertaken using the 137Cs technique. Results for sedimentation rates showed no particular downstream pattern. This may be partially explained by underestimation of sedimentation rates at some sites by failure to sample the full 137Cs profile, floodplain erosion and deliberate removal of sediment. Evidence of lateral increases in net sedimentation rates with distance from the channel may be explained by increased floodplain erosion at sites closer to the channel and floodplain formation by lateral deposition. Potential sediment sources for the catchment were considered to be forest topsoil, subsurface material and sediments derived from urban areas, which were found to be predominantly subsurface material. Tracing techniques showed an increase in subsurface material for downstream sites, confirming expectations that subsurface material would increase in the downstream direction in response to the direct and indirect effects of urbanization.

Reactive Fe(II) layers in deep-sea sediments

NASA Astrophysics Data System (ADS)

König, Iris; Haeckel, Matthias; Drodt, Matthias; Suess, Erwin; Trautwein, Alfred X.

1999-05-01

The percentage of the structural Fe(II) in clay minerals that is readily oxidized to Fe(III) upon contact with atmospheric oxygen was determined across the downcore tan-green color change in Peru Basin sediments. This latent fraction of reactive Fe(II) was only found in the green strata, where it proved to be large enough to constitute a deep reaction layer with respect to the pore water O 2 and NO 3-. Large variations were detected in the proportion of the reactive Fe(II) concentration to the organic matter content along core profiles. Hence, the commonly observed tan-green color change in marine sediments marks the top of a reactive Fe(II) layer, which may represent the major barrier to the movement of oxidation fronts in pelagic subsurface sediments. This is also demonstrated by numerical model simulations. The findings imply that geochemical barriers to pore water oxidation fronts form diagenetically in the sea floor wherever the stage of iron reduction is reached, provided that the sediments contain a significant amount of structural iron in clay minerals.

Yucatan Subsurface Stratigraphy from Geophysical Data, Well Logs and Core Analyses in the Chicxulub Impact Crater and Implications for Target Heterogeneities

NASA Astrophysics Data System (ADS)

Canales, I.; Fucugauchi, J. U.; Perez-Cruz, L. L.; Camargo, A. Z.; Perez-Cruz, G.

2011-12-01

Asymmetries in the geophysical signature of Chicxulub crater are being evaluated to investigate on effects of impact angle and trajectory and pre-existing target structural controls for final crater form. Early studies interpreted asymmetries in the gravity anomaly in the offshore sector to propose oblique either northwest- and northeast-directed trajectories. An oblique impact was correlated to the global ejecta distribution and enhanced environmental disturbance. In contrast, recent studies using marine seismic data and computer modeling have shown that crater asymmetries correlate with pre-existing undulations of the Cretaceous continental shelf, suggesting a structural control of target heterogeneities. Documentation of Yucatan subsurface stratigraphy has been limited by lack of outcrops of pre-Paleogene rocks. The extensive cover of platform carbonate rocks has not been affected by faulting or deformation and with no rivers cutting the carbonates, information comes mainly from the drilling programs and geophysical surveys. Here we revisit the subsurface stratigraphy in the crater area from the well log data and cores retrieved in the drilling projects and marine seismic reflection profiles. Other source of information being exploited comes from the impact breccias, which contain a sampling of disrupted target sequences, including crystalline basement and Mesozoic sediments. We analyze gravity and seismic data from the various exploration surveys, including multiple Pemex profiles in the platform and the Chicxulub experiments. Analyses of well log data and seismic profiles identify contacts for Lower Cretaceous, Cretaceous/Jurassic and K/Pg boundaries. Results show that the Cretaceous continental shelf was shallower on the south and southwest than on the east, with emerged areas in Quintana Roo and Belize. Mesozoic and upper Paleozoic sediments show variable thickness, possibly reflecting the crystalline basement regional structure. Paleozoic and Precambrian basement outcrops are located farther to the southeast in Belize and northern Guatemala. Inferred shelf paleo-bathymetry supports existence of a sedimentary basin extending to the northeast, where crater rim and terrace zones are subdued in the seismic images.

Microbial community stratification controlled by the subseafloor fluid flow and geothermal gradient at the Iheya North hydrothermal field in the Mid-Okinawa Trough (Integrated Ocean Drilling Program Expedition 331).

PubMed

Yanagawa, Katsunori; Breuker, Anja; Schippers, Axel; Nishizawa, Manabu; Ijiri, Akira; Hirai, Miho; Takaki, Yoshihiro; Sunamura, Michinari; Urabe, Tetsuro; Nunoura, Takuro; Takai, Ken

2014-10-01

The impacts of lithologic structure and geothermal gradient on subseafloor microbial communities were investigated at a marginal site of the Iheya North hydrothermal field in the Mid-Okinawa Trough. Subsurface marine sediments composed of hemipelagic muds and volcaniclastic deposits were recovered through a depth of 151 m below the seafloor at site C0017 during Integrated Ocean Drilling Program Expedition 331. Microbial communities inferred from 16S rRNA gene clone sequencing in low-temperature hemipelagic sediments were mainly composed of members of the Chloroflexi and deep-sea archaeal group. In contrast, 16S rRNA gene sequences of marine group I Thaumarchaeota dominated the microbial phylotype communities in the coarse-grained pumiceous gravels interbedded between the hemipelagic sediments. Based on the physical properties of sediments such as temperature and permeability, the porewater chemistry, and the microbial phylotype compositions, the shift in the physical properties of the sediments is suggested to induce a potential subseafloor recharging flow of oxygenated seawater in the permeable zone, leading to the generation of variable chemical environments and microbial communities in the subseafloor habitats. In addition, the deepest section of sediments under high-temperature conditions (∼90°C) harbored the sequences of an uncultivated archaeal lineage of hot water crenarchaeotic group IV that may be associated with the high-temperature hydrothermal fluid flow. These results indicate that the subseafloor microbial community compositions and functions at the marginal site of the hydrothermal field are highly affected by the complex fluid flow structure, such as recharging seawater and underlying hydrothermal fluids, coupled with the lithologic transition of sediments. Copyright © 2014, American Society for Microbiology. All Rights Reserved.

Microbial Community Stratification Controlled by the Subseafloor Fluid Flow and Geothermal Gradient at the Iheya North Hydrothermal Field in the Mid-Okinawa Trough (Integrated Ocean Drilling Program Expedition 331)

PubMed Central

Breuker, Anja; Schippers, Axel; Nishizawa, Manabu; Ijiri, Akira; Hirai, Miho; Takaki, Yoshihiro; Sunamura, Michinari; Urabe, Tetsuro; Nunoura, Takuro; Takai, Ken

2014-01-01

The impacts of lithologic structure and geothermal gradient on subseafloor microbial communities were investigated at a marginal site of the Iheya North hydrothermal field in the Mid-Okinawa Trough. Subsurface marine sediments composed of hemipelagic muds and volcaniclastic deposits were recovered through a depth of 151 m below the seafloor at site C0017 during Integrated Ocean Drilling Program Expedition 331. Microbial communities inferred from 16S rRNA gene clone sequencing in low-temperature hemipelagic sediments were mainly composed of members of the Chloroflexi and deep-sea archaeal group. In contrast, 16S rRNA gene sequences of marine group I Thaumarchaeota dominated the microbial phylotype communities in the coarse-grained pumiceous gravels interbedded between the hemipelagic sediments. Based on the physical properties of sediments such as temperature and permeability, the porewater chemistry, and the microbial phylotype compositions, the shift in the physical properties of the sediments is suggested to induce a potential subseafloor recharging flow of oxygenated seawater in the permeable zone, leading to the generation of variable chemical environments and microbial communities in the subseafloor habitats. In addition, the deepest section of sediments under high-temperature conditions (∼90°C) harbored the sequences of an uncultivated archaeal lineage of hot water crenarchaeotic group IV that may be associated with the high-temperature hydrothermal fluid flow. These results indicate that the subseafloor microbial community compositions and functions at the marginal site of the hydrothermal field are highly affected by the complex fluid flow structure, such as recharging seawater and underlying hydrothermal fluids, coupled with the lithologic transition of sediments. PMID:25063666

Microbes in deep marine sediments viewed through amplicon sequencing and metagenomics

NASA Astrophysics Data System (ADS)

Biddle, J.; Leon, Z. R.; Russell, J. A., III; Martino, A. J.

2016-12-01

Nearly twenty percent of microbial biomass on Earth can be found in the marine subsurface. The majority of this is concentrated on continental margins, which have been investigated by scientific drilling. On the Costa Rica Margin, Iberian Margin and Peru Margins, sediment samples have been investigated through DNA extraction followed by amplicon and metagenomic sequencing. Overall samples show a high degree of microbial diversity, including many lineages of newly defined groups. In this talk, metagenome assembled genomes of unusual lineages will be presented, including their relationships to shallower relatives. From Costa Rica, in particular, we have retrieved deep relatives of Lokiarchaeota and Thorarchaeota, as well as other deeply branching archaeal relatives. We discuss their genome similarities to both other archaea and eukaryotes. From the Iberian Margin, relatives of Atribacteria and Aerophobetes will be discussed. Finally, we will detail the knowledge lost or gained depending on whether samples are studied via amplicon sequencing or total metagenomics, as studies in other environments have shown that up to 15% of microbial diversity is ignored when samples are studied via amplicon sequencing alone.

High frequency of phylogenetically diverse reductive dehalogenase-homologous genes in deep subseafloor sedimentary metagenomes

PubMed Central

Kawai, Mikihiko; Futagami, Taiki; Toyoda, Atsushi; Takaki, Yoshihiro; Nishi, Shinro; Hori, Sayaka; Arai, Wataru; Tsubouchi, Taishi; Morono, Yuki; Uchiyama, Ikuo; Ito, Takehiko; Fujiyama, Asao; Inagaki, Fumio; Takami, Hideto

2014-01-01

Marine subsurface sediments on the Pacific margin harbor diverse microbial communities even at depths of several hundreds meters below the seafloor (mbsf) or more. Previous PCR-based molecular analysis showed the presence of diverse reductive dehalogenase gene (rdhA) homologs in marine subsurface sediment, suggesting that anaerobic respiration of organohalides is one of the possible energy-yielding pathways in the organic-rich sedimentary habitat. However, primer-independent molecular characterization of rdhA has remained to be demonstrated. Here, we studied the diversity and frequency of rdhA homologs by metagenomic analysis of five different depth horizons (0.8, 5.1, 18.6, 48.5, and 107.0 mbsf) at Site C9001 off the Shimokita Peninsula of Japan. From all metagenomic pools, remarkably diverse rdhA-homologous sequences, some of which are affiliated with novel clusters, were observed with high frequency. As a comparison, we also examined frequency of dissimilatory sulfite reductase genes (dsrAB), key functional genes for microbial sulfate reduction. The dsrAB were also widely observed in the metagenomic pools whereas the frequency of dsrAB genes was generally smaller than that of rdhA-homologous genes. The phylogenetic composition of rdhA-homologous genes was similar among the five depth horizons. Our metagenomic data revealed that subseafloor rdhA homologs are more diverse than previously identified from PCR-based molecular studies. Spatial distribution of similar rdhA homologs across wide depositional ages indicates that the heterotrophic metabolic processes mediated by the genes can be ecologically important, functioning in the organic-rich subseafloor sedimentary biosphere. PMID:24624126

High frequency of phylogenetically diverse reductive dehalogenase-homologous genes in deep subseafloor sedimentary metagenomes.

PubMed

Kawai, Mikihiko; Futagami, Taiki; Toyoda, Atsushi; Takaki, Yoshihiro; Nishi, Shinro; Hori, Sayaka; Arai, Wataru; Tsubouchi, Taishi; Morono, Yuki; Uchiyama, Ikuo; Ito, Takehiko; Fujiyama, Asao; Inagaki, Fumio; Takami, Hideto

2014-01-01

Marine subsurface sediments on the Pacific margin harbor diverse microbial communities even at depths of several hundreds meters below the seafloor (mbsf) or more. Previous PCR-based molecular analysis showed the presence of diverse reductive dehalogenase gene (rdhA) homologs in marine subsurface sediment, suggesting that anaerobic respiration of organohalides is one of the possible energy-yielding pathways in the organic-rich sedimentary habitat. However, primer-independent molecular characterization of rdhA has remained to be demonstrated. Here, we studied the diversity and frequency of rdhA homologs by metagenomic analysis of five different depth horizons (0.8, 5.1, 18.6, 48.5, and 107.0 mbsf) at Site C9001 off the Shimokita Peninsula of Japan. From all metagenomic pools, remarkably diverse rdhA-homologous sequences, some of which are affiliated with novel clusters, were observed with high frequency. As a comparison, we also examined frequency of dissimilatory sulfite reductase genes (dsrAB), key functional genes for microbial sulfate reduction. The dsrAB were also widely observed in the metagenomic pools whereas the frequency of dsrAB genes was generally smaller than that of rdhA-homologous genes. The phylogenetic composition of rdhA-homologous genes was similar among the five depth horizons. Our metagenomic data revealed that subseafloor rdhA homologs are more diverse than previously identified from PCR-based molecular studies. Spatial distribution of similar rdhA homologs across wide depositional ages indicates that the heterotrophic metabolic processes mediated by the genes can be ecologically important, functioning in the organic-rich subseafloor sedimentary biosphere.

Heterotrophic Archaea dominate sedimentary subsurface ecosystems off Peru

PubMed Central

Biddle, Jennifer F.; Lipp, Julius S.; Lever, Mark A.; Lloyd, Karen G.; Sørensen, Ketil B.; Anderson, Rika; Fredricks, Helen F.; Elvert, Marcus; Kelly, Timothy J.; Schrag, Daniel P.; Sogin, Mitchell L.; Brenchley, Jean E.; Teske, Andreas; House, Christopher H.; Hinrichs, Kai-Uwe

2006-01-01

Studies of deeply buried, sedimentary microbial communities and associated biogeochemical processes during Ocean Drilling Program Leg 201 showed elevated prokaryotic cell numbers in sediment layers where methane is consumed anaerobically at the expense of sulfate. Here, we show that extractable archaeal rRNA, selecting only for active community members in these ecosystems, is dominated by sequences of uncultivated Archaea affiliated with the Marine Benthic Group B and the Miscellaneous Crenarchaeotal Group, whereas known methanotrophic Archaea are not detectable. Carbon flow reconstructions based on stable isotopic compositions of whole archaeal cells, intact archaeal membrane lipids, and other sedimentary carbon pools indicate that these Archaea assimilate sedimentary organic compounds other than methane even though methanotrophy accounts for a major fraction of carbon cycled in these ecosystems. Oxidation of methane by members of Marine Benthic Group B and the Miscellaneous Crenarchaeotal Group without assimilation of methane–carbon provides a plausible explanation. Maintenance energies of these subsurface communities appear to be orders of magnitude lower than minimum values known from laboratory observations, and ecosystem-level carbon budgets suggest that community turnover times are on the order of 100–2,000 years. Our study provides clues about the metabolic functionality of two cosmopolitan groups of uncultured Archaea. PMID:16505362

Zonation of Microbial Communities by a Hydrothermal Mound in the Atlantis II Deep (the Red Sea).

PubMed

Wang, Yong; Li, Jiang Tao; He, Li Sheng; Yang, Bo; Gao, Zhao Ming; Cao, Hui Luo; Batang, Zenon; Al-Suwailem, Abdulaziz; Qian, Pei-Yuan

2015-01-01

In deep-sea geothermal rift zones, the dispersal of hydrothermal fluids of moderately-high temperatures typically forms subseafloor mounds. Major mineral components of the crust covering the mound are barite and metal sulfides. As a result of the continental rifting along the Red Sea, metalliferous sediments accumulate on the seafloor of the Atlantis II Deep. In the present study, a barite crust was identified in a sediment core from the Atlantis II Deep, indicating the formation of a hydrothermal mound at the sampling site. Here, we examined how such a dense barite crust could affect the local environment and the distribution of microbial inhabitants. Our results demonstrate distinctive features of mineral components and microbial communities in the sediment layers separated by the barite crust. Within the mound, archaea accounted for 65% of the community. In contrast, the sediments above the barite boundary were overwhelmed by bacteria. The composition of microbial communities under the mound was similar to that in the sediments of the nearby Discovery Deep and marine cold seeps. This work reveals the zonation of microbial communities after the formation of the hydrothermal mound in the subsurface sediments of the rift basin.

Zonation of Microbial Communities by a Hydrothermal Mound in the Atlantis II Deep (the Red Sea)

PubMed Central

Wang, Yong; Li, Jiang Tao; He, Li Sheng; Yang, Bo; Gao, Zhao Ming; Cao, Hui Luo; Batang, Zenon; Al-Suwailem, Abdulaziz; Qian, Pei-Yuan

2015-01-01

In deep-sea geothermal rift zones, the dispersal of hydrothermal fluids of moderately-high temperatures typically forms subseafloor mounds. Major mineral components of the crust covering the mound are barite and metal sulfides. As a result of the continental rifting along the Red Sea, metalliferous sediments accumulate on the seafloor of the Atlantis II Deep. In the present study, a barite crust was identified in a sediment core from the Atlantis II Deep, indicating the formation of a hydrothermal mound at the sampling site. Here, we examined how such a dense barite crust could affect the local environment and the distribution of microbial inhabitants. Our results demonstrate distinctive features of mineral components and microbial communities in the sediment layers separated by the barite crust. Within the mound, archaea accounted for 65% of the community. In contrast, the sediments above the barite boundary were overwhelmed by bacteria. The composition of microbial communities under the mound was similar to that in the sediments of the nearby Discovery Deep and marine cold seeps. This work reveals the zonation of microbial communities after the formation of the hydrothermal mound in the subsurface sediments of the rift basin. PMID:26485717

The metal oxide fraction of pelagic sediment in the equatorial North Pacific Ocean: A source of metals in ferromanganese nodules

USGS Publications Warehouse

Piper, D.Z.

1988-01-01

Pelagic sediment recovered at DOMES Site A in the equatorial North Pacific (151??W, 9?? 15???N) consists of a surface homogeneous layer, approximately 10 cm thick, overlying a strongly mottled layer that is lighter in color. The radiolarian composition of both units is Quaternary. In areas where this sediment was only a few centimeters thick, the underlying sediment was early Tertiary. Clay mineralogy and major oxide composition of the two Quaternary sediments are uniform. Their similarity to continental shale suggests that the sediment has a terrigenous source. Clay mineralogy and major oxide composition of the Tertiary sediment also are uniform, although they differ markedly from the Quarternary sediment. In contrast to the major oxides, concentrations of Mn, Co, Cu, and Ni soluble in hydroxylamine hydrochlorideacetic acid are strongly different in the surface and subsurface Quaternary sediment. Mn and Ni exhibit pronounced depletions in the subsurface sediment, Ni slightly more than Mn. Cu is also depleted in the subsurface sediment, but less than Mn. It is also depleted in the subsurface Tertiary sediment, whereas the Mn concentration remains high. Concentration of Co relative to Mn increases into the subsurface Quaternary sediment to a constant Co:Mn ratio of 3 ?? 10-2. The trivalent REE (the REE exclusive of Ce) and Fe exhibit little down-core variation. Distribution of elements in these sediments is closely related to their concentration in associated surface ferromanganese nodules. The nodules are of two distinct types: those from the area where the Quaternary sediment is relatively thick have ??-MnO2 as the dominant manganese mineral. The ratios of Ni:Mn, Cu:Mn, and Fe:Mn in these nodules approximate the corresponding ratios of the soluble fraction of surface sediment. Todorokite is the dominant mineral of nodules recovered from areas where the Quaternary sediment is thin. Relatively high Cu/Mn, Ni/Mn, and low Fe/Mn ratios of these nodules mirror differences between the soluble fraction of surface and subsurface Quaternary sediment. These compositional trends of sediment and nodules at DOMES Site A reflect a diagenetic origin for the todorokite nodules and a predominantly hydrogenous origin for the ??-MnO2 nodules. ?? 1988.

Quantifying microbial activity in deep subsurface sediments using a tritium based hydrognease enzyme assay

NASA Astrophysics Data System (ADS)

Adhikari, R.; Nickel, J.; Kallmeyer, J.

2012-12-01

Microbial life is widespread in Earth's subsurface and estimated to represent a significant fraction of Earth's total living biomass. However, very little is known about subsurface microbial activity and its fundamental role in biogeochemical cycles of carbon and other biologically important elements. Hydrogen is one of the most important elements in subsurface anaerobic microbial metabolism. Heterotrophic and chemoautotrophic microorganisms use hydrogen in their metabolic pathways. They either consume or produce protons for ATP synthesis. Hydrogenase (H2ase) is a ubiquitous intracellular enzyme that catalyzes the interconversion of molecular hydrogen and/or water into protons and electrons. The protons are used for the synthesis of ATP, thereby coupling energy generating metabolic processes to electron acceptors such as CO2 or sulfate. H2ase enzyme targets a key metabolic compound in cellular metabolism therefore the assay can be used as a measure for total microbial activity without the need to identify any specific metabolic process. Using the highly sensitive tritium assay we measured H2ase enzyme activity in the organic-rich sediments of Lake Van, a saline, alkaline lake in eastern Turkey, in marine sediments of the Barents Sea and in deep subseafloor sediments from the Nankai Trough. H2ase activity could be quantified at all depths of all sites but the activity distribution varied widely with depth and between sites. At the Lake Van sites H2ase activity ranged from ca. 20 mmol H2 cm-3d-1 close to the sediment-water interface to 0.5 mmol H2 cm-3d-1 at a depth of 0.8 m. In samples from the Barents Sea H2ase activity ranged between 0.1 to 2.5 mmol H2 cm-3d-1 down to a depth of 1.60 m. At all sites the sulfate reduction rate profile followed the upper part of the H2ase activity profile until sulfate reduction reached the minimum detection limit (ca. 10 pmol cm-3d-1). H2ase activity could still be quantified after the decline of sulfate reduction, indicating that other microbial processes are becoming quantitatively more important. Similarly, H2ase activity could be quantified at greater depths (ca. 400 mbsf) in Nankai Trough sediments. Nankai Trough is one of the world's most geologically active accretionary wedges, where the Philippine Plate is subducting under the southwest of Japan. Due to the transient faulting, huge amounts of energy are liberated that enhance chemical transformations of organic and inorganic matter. An increase in H2ase activity could be observed at greater depth, which suggests that microbial activity is stimulated by the fault activity. Current techniques for the quantification of microbial activity in deep sediments have already reached their physical and technical limits and-in many cases- are still not sensitive enough to quantify extremely low rates of microbial activity. Additional to the quantification of specific processes, estimates of total microbial activity will provide valuable information on energy flux and microbial metabolism in the subsurface biosphere and other low-energy environments as well as help identifying hotspots of microbial activity. The tritium H2ase assay has a potential to become a valuable tool to measure total subsurface microbial activity.

Complete genome sequence of Anaeromyxobacter sp. Fw109-5, an Anaerobic, Metal-Reducing Bacterium Isolated from a Contaminated Subsurface Environment

DOE PAGES

Hwang, C.; Copeland, A.; Lucas, Susan; ...

2015-01-22

We report the genome sequence of Anaeromyxobacter sp. Fw109-5, isolated from nitrate- and uranium-contaminated subsurface sediment of the Oak Ridge Integrated Field-Scale Subsurface Research Challenge (IFC) site, Oak Ridge Reservation, TN. The bacterium’s genome sequence will elucidate its physiological potential in subsurface sediments undergoing in situ uranium bioremediation and natural attenuation.

Metabolic activity of subseafloor microbes in the South Pacific Gyre

NASA Astrophysics Data System (ADS)

Morono, Y.; Ito, M.; Terada, T.; Inagaki, F.

2013-12-01

The South Pacific Gyre (SPG) is characterized as the most oligotrophic open ocean environment. The sediment is rich in oxygen but poor in energy-sources such as reduced organic matter, and hence harbors very low numbers of microbial cells in relatively shallow subseafloor sediment (D'Hondt et al., 2009; Kallmeyer et al., 2012). In such an energy-limited sedimentary habitat, a small size of microbial community persists living functions with extraordinary low oxygen-consumption rate (Røy et al., 2012). During IODP Expedition 329, a series of sediment samples were successfully recovered from 7 drill sites (U1365-1371) from the seafloor to basement in the SPG, providing an unprecedented opportunity to study metabolic activity of the aerobic subseafloor microbial communities. We initiated incubation onboard by adding stable isotope-labeled substrates to the freshly collected sediment sample, such as 13C and/or 15N-labeled bicarbonate, glucose, amino acids, acetate, and ammonium under the (micro-) aerobic condition. One of the technological challenges in this study is to harvest microbial cells from very low-biomass sediment samples for the analysis using nano-scale secondary ion mass spectrometry (NanoSIMS). To address the technical issue, we improved existing cell separation technique for the SPG sediment samples with small inorganic zeolitic grains. By monitoring cell recovery rates through an image-based cell enumeration technique (Morono et al., 2009), we found that cell recovery rates in the SPG sediment samples are generally lower than those in other oceanographic settings (i.e., organic-rich ocean margin sediments). To gain higher cell recovery ratio, we applied multiple density gradient layers, resulting in the cell recovery ratio up to around 80-95% (Morono et al., in press). Then, using the newly developed cell separation technique, we successfully sorted enough number of microbial cells in small spots on the membrane (i.e., 103 to 105 cells per spot). NanoSIMS analysis showed incorporation of the supplemented stable isotope-labeled substrates after 1.5 year-incubation. The substrate incorporation rates of individual microbial cell ranged in average from 1/10 to 1/2 of those values previously observed in an organic-rich ocean margin sediment (Morono et al., 2011). References S. D'Hondt et al., Subseafloor sedimentary life in the South Pacific Gyre. Proc Natl Acad Sci USA 106, 11651 (2009) J. Kallmeyeret al., Global distribution of microbial abundance and biomass in subseafloor sediment. Proc Natl Acad Sci USA 109, 16213 (2012) H. Røy et al., Aerobic microbial respiration in 86-million-year-old deep-sea red clay. Science 336, 922 (2012) Y. Morono et al. Discriminative detection and enumeration of microbial life in marine subsurface sediments. ISME J 3, 503 (2009) Y. Morono et al., An Improved Cell Separation Technique for Marine Subsurface Sediments: Applications for High-throughput Analysis Using Flow Cytometry and Cell Sorting. Environ Microbiol, (2013) Y. Morono et al., Carbon and nitrogen assimilation in deep subseafloor microbial cells. Proc Natl Acad Sci USA 108, 18295 (2011)

Discriminative detection and enumeration of microbial life in marine subsurface sediments.

PubMed

Morono, Yuki; Terada, Takeshi; Masui, Noriaki; Inagaki, Fumio

2009-05-01

Detection and enumeration of microbial life in natural environments provide fundamental information about the extent of the biosphere on Earth. However, it has long been difficult to evaluate the abundance of microbial cells in sedimentary habitats because non-specific binding of fluorescent dye and/or auto-fluorescence from sediment particles strongly hampers the recognition of cell-derived signals. Here, we show a highly efficient and discriminative detection and enumeration technique for microbial cells in sediments using hydrofluoric acid (HF) treatment and automated fluorescent image analysis. Washing of sediment slurries with HF significantly reduced non-biological fluorescent signals such as amorphous silica and enhanced the efficiency of cell detachment from the particles. We found that cell-derived SYBR Green I signals can be distinguished from non-biological backgrounds by dividing green fluorescence (band-pass filter: 528/38 nm (center-wavelength/bandwidth)) by red (617/73 nm) per image. A newly developed automated microscope system could take a wide range of high-resolution image in a short time, and subsequently enumerate the accurate number of cell-derived signals by the calculation of green to red fluorescence signals per image. Using our technique, we evaluated the microbial population in deep marine sediments offshore Peru and Japan down to 365 m below the seafloor, which provided objective digital images as evidence for the quantification of the prevailing microbial life. Our method is hence useful to explore the extent of sub-seafloor life in the future scientific drilling, and moreover widely applicable in the study of microbial ecology.

Bioturbation and the role of microniches for sulfate reduction in coastal marine sediments.

PubMed

Bertics, Victoria J; Ziebis, Wiebke

2010-11-01

The effects of bioturbation in marine sediments are mainly associated with an increase in oxic and oxidized zones through an influx of oxygen-rich water deeper into the sediment and the rapid transport of particles between oxic and anoxic conditions. However, macrofaunal activity also can increase the occurrence of reduced microniches and anaerobic processes, such as sulfate reduction. Our goal was to determine the two-dimensional distribution of microniches associated with burrows of a ghost shrimp (Neotrypaea californiensis) and to determine microbial activities. In laboratory experiments, detailed measurements of sulfate reduction rates (SRR) were measured by injecting, in a 1 cm grid, radiolabelled sulfate directly into a narrow aquarium (40 cm × 30 cm × 3 cm) containing the complex burrow of an actively burrowing shrimp. Light-coloured oxidized burrow walls, along with black reduced microniches, were clearly visible through the aquarium walls. Direct injection of radiotracers allowed for whole-aquarium incubation to obtain two-dimensional documentation of sulfate reduction. Results indicated SRR were up to three orders of magnitude higher (140-790 nmol SO(4) (2-) cm(-3) day(-1) ) in reduced microniches associated with burrows when compared with the surrounding sediment. Additionally, some of the subsurface sulfate-reducing microniches associated with the burrow system appeared to be zones of dinitrogen fixation. Bioturbation may also lead to decreased sulfate reduction in other microniches and the sum of the activity in all microniches might not result in a total increase of sulfate reduction compared with non-bioturbated control sediments. © 2010 Society for Applied Microbiology and Blackwell Publishing Ltd.

Generation of sedimentary fabrics and facies by repetitive excavation and storm infilling of burrow networks Holocene of south Florida and Caicos Platform, B. W. I

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tedesco, L.P.; Wanless, H.R.

Excavation of deep, open burrow networks and subsequent infilling with sediment from the surface produces an entirely new sedimentary deposit and results in obliteration to severe diagenetic transformation of precursor depositional facies. Repetitive excavation and infilling is responsible for creating the preserved depositional facies of many marine deposits. Excavating burrowers occur from intertidal to abyssal depths, and are important throughout the Phanerozoic. The repetitive coupling of deep, open burrow excavation with subsequent storm sediment infilling of open burrow networks is a gradual process that ultimately results in the loss of the original deposit and the generation of new lithologies, fabricsmore » and facies. The new lithologies are produced in the subsurface and possess fabrics, textures and skeletal assemblages that are not a direct reflection of either precursor facies or the surficial depositional conditions. Sedimentary facies generated by repetitive burrow excavation and infilling commonly are massively bedded and generally are mottled skeletal packstones. Skeletal grains usually are well-preserved and coarser components are concentrated in burrow networks, pockets and patches. The coarse skeletal components of burrow-generated facies are a mixture of coarse bioclasts from the precursor facies and both the coarse and fine skeletal material introduced from the sediment surface. Many so-called bioturbated or massive facies may, in fact, be primary depositional facies generated in the subsurface and represent severe diagenetic transformation of originally deposited sequences. In addition, mudstones and wackestones mottled with packstone patches may record storm sedimentation.« less

Heat Stress Dictates Microbial Lipid Composition along a Thermal Gradient in Marine Sediments

PubMed Central

Sollich, Miriam; Yoshinaga, Marcos Y.; Häusler, Stefan; Price, Roy E.; Hinrichs, Kai-Uwe; Bühring, Solveig I.

2017-01-01

Temperature exerts a first-order control on microbial populations, which constantly adjust the fluidity and permeability of their cell membrane lipids to minimize loss of energy by ion diffusion across the membrane. Analytical advances in liquid chromatography coupled to mass spectrometry have allowed the detection of a stunning diversity of bacterial and archaeal lipids in extreme environments such as hot springs, hydrothermal vents and deep subsurface marine sediments. Here, we investigated a thermal gradient from 18 to 101°C across a marine sediment field and tested the hypothesis that cell membrane lipids provide a major biochemical basis for the bioenergetics of archaea and bacteria under heat stress. This paper features a detailed lipidomics approach with the focus on membrane lipid structure-function. Membrane lipids analyzed here include polar lipids of bacteria and polar and core lipids of archaea. Reflecting the low permeability of their ether-linked isoprenoids, we found that archaeal polar lipids generally dominate over bacterial lipids in deep layers of the sediments influenced by hydrothermal fluids. A close examination of archaeal and bacterial lipids revealed a membrane quandary: not only low permeability, but also increased fluidity of membranes are required as a unified property of microbial membranes for energy conservation under heat stress. For instance, bacterial fatty acids were composed of longer chain lengths in concert with higher degree of unsaturation while archaea modified their tetraethers by incorporation of additional methyl groups at elevated sediment temperatures. It is possible that these configurations toward a more fluidized membrane at elevated temperatures are counterbalanced by the high abundance of archaeal glycolipids and bacterial sphingolipids, which could reduce membrane permeability through strong intermolecular hydrogen bonding. Our results provide a new angle for interpreting membrane lipid structure-function enabling archaea and bacteria to survive and grow in hydrothermal systems. PMID:28878741

3D voxel modelling of the marine subsurface: the Belgian Continental Shelf case

NASA Astrophysics Data System (ADS)

Hademenos, Vasileios; Kint, Lars; Missiaen, Tine; Stafleu, Jan; Van Lancker, Vera

2017-04-01

The need for marine space grows bigger by the year. Dredging, wind farms, aggregate extraction and many other activities take up more space than ever before. As a result, the need for an accurate model that describes the properties of the areas in use is a priority. To address this need a 3D voxel model of the subsurface of the Belgian part of the North Sea has been created in the scope of the Belgian Science Policy project TILES ('Transnational and Integrated Long-term Marine Exploitation Strategies'). Since borehole data in the marine environment are a costly endeavour and therefore relatively scarce, seismic data have been incorporated in order to improve the data coverage. Lithostratigraphic units have been defined and lithoclasses are attributed to the voxels using a stochastic interpolation. As a result each voxel contains a unique value of one of 7 lithological classes (spanning in grain size from clay to gravel) in association with the geological layer it belongs to. In addition other forms of interpolation like sequential indicator simulation have allowed us to calculate the probability occurrence of each lithoclass, thus providing additional info from which the uncertainty of the model can be derived. The resulting 3D voxel model gives a detailed image of the distribution of different sediment types and provides valuable insight on the different geological settings. The voxel model also allows to estimate resource volumes (e.g. the availability of particular sand classes), enabling a more targeted exploitation. The primary information of the model is related to geology, but the model can additionally host any type of information.

Quantification of microbial activity in subsurface environments using a hydrogenase enzyme assay

NASA Astrophysics Data System (ADS)

Adhikari, R. R.; Nickel, J.; Kallmeyer, J.

2012-04-01

The subsurface biosphere is the largest microbial ecosystem on Earth. Despite its large size and extensive industrial exploitation, very little is known about the role of microbial activity in the subsurface. Subsurface microbial activity plays a fundamental role in geochemical cycles of carbon and other biologically important elements. How the indigenous microbial communities are supplied with energy is one of the most fundamental questions in subsurface research. It is still an enigma how these communities can survive with such recalcitrant carbon over geological time scales. Despite its usually very low concentration, hydrogen is an important element in subsurface environments. Heterotrophic and chemoautotrophic microorganisms use hydrogen in their metabolic pathways; they either obtain protons from the radiolysis of water and/or cleavage of hydrogen generated by the alteration of basaltic crust, or they dispose of protons by formation of water. Hydrogenase (H2ase) is a ubiquitous intracellular enzyme that catalyzes the interconversion of molecular hydrogen and/or water into protons and electrons. The protons are used for the synthesis of ATP, thereby coupling energy-generating metabolic processes to electron acceptors such as carbon dioxide or sulfate. H2ase activity can therefore be used as a measure for total microbial activity as it targets a key metabolic compound rather than a specific turnover process. Using a highly sensitive tritium assay we measured H2ase enzyme activity in the organic-rich sediments of Lake Van, a saline, alkaline lake in eastern Turkey and in marine subsurface sediments of the Barents Sea. Additionally, sulfate reduction rates (SRRs) were measured to compare the results of the H2ase enzyme assay with the quantitatively most important electron acceptor process. H2ase activity was found at all sites, measured values and distribution of activity varied widely with depth and between sites. At the Lake Van sites H2ase activity ranged from ca. 20 mmol H2 cm-3 d-1 close to the sediment-water interface to 0.5 mmol H2 cm-3 d-1 at a depth of 0.8 m. In samples from the Barents Sea H2ase activity ranged between 0.1 to 2.5 mmol H2 cm-3 d-1 down to a depth of 1.60 m. At all sites the SRR profile followed the H2ase activity profile until SRR declined to values close to the minimum detection limit (~10 pmol cm-3 d-1). H2ase activity increased again after SRR declined, indicating that other microbial processes are becoming quantitatively more important. The H2ase and SRR data show that our assay has a potential to become a valuable tool to measure total subsurface microbial activity.

Great differences in the critical erosion threshold between surface and subsurface sediments: A field investigation of an intertidal mudflat, Jiangsu, China

NASA Astrophysics Data System (ADS)

Shi, Benwei; Wang, Ya Ping; Wang, Li Hua; Li, Peng; Gao, Jianhua; Xing, Fei; Chen, Jing Dong

2018-06-01

Understanding of bottom sediment erodibility is necessary for the sustainable management and protection of coastlines, and is of great importance for numerical models of sediment dynamics and transport. To investigate the dependence of sediment erodibility on degree of consolidation, we measured turbidity, waves, tidal currents, intratidal bed-level changes, and sediment properties on an exposed macrotidal mudflat during a series of tidal cycles. We estimated the water content of surface sediments (in the uppermost 2 cm of sediment) and sub-surface sediments (at 2 cm below the sediment surface). Bed shear stress values due to currents (τc), waves (τw), and combined current-wave action (τcw) were calculated using a hydrodynamic model. In this study, we estimate the critical shear stress for erosion using two approaches and both of them give similar results. We found that the critical shear stress for erosion (τce) was 0.17-0.18 N/m2 in the uppermost 0-2 cm of sediment and 0.29 N/m2 in sub-surface sediment layers (depth, 2 cm), as determined by time series of τcw values and intratidal bed-level changes, and values of τce, obtained using the water content of bottom sediments, were 0.16 N/m2 in the uppermost 2 cm and 0.28 N/m2 in the sub-surface (depth, 2 cm) sediment. These results indicate that the value of τce for sub-surface sediments (depth, 2 cm) is much greater than that for the uppermost sediments (depth, 0-2 cm), and that the τce value is mainly related to the water content, which is determined by the extent of consolidation. Our results have implications for improving the predictive accuracy of models of sediment transport and morphological evolution, by introducing variable τce values for corresponding sediment layers, and can also provide a mechanistic understanding of bottom sediment erodibility at different sediment depths on intertidal mudflats, as related to differences in the consolidation time.

A constant flux of diverse thermophilic bacteria into the cold Arctic seabed.

PubMed

Hubert, Casey; Loy, Alexander; Nickel, Maren; Arnosti, Carol; Baranyi, Christian; Brüchert, Volker; Ferdelman, Timothy; Finster, Kai; Christensen, Flemming Mønsted; Rosa de Rezende, Júlia; Vandieken, Verona; Jørgensen, Bo Barker

2009-09-18

Microorganisms have been repeatedly discovered in environments that do not support their metabolic activity. Identifying and quantifying these misplaced organisms can reveal dispersal mechanisms that shape natural microbial diversity. Using endospore germination experiments, we estimated a stable supply of thermophilic bacteria into permanently cold Arctic marine sediment at a rate exceeding 10(8) spores per square meter per year. These metabolically and phylogenetically diverse Firmicutes show no detectable activity at cold in situ temperatures but rapidly mineralize organic matter by hydrolysis, fermentation, and sulfate reduction upon induction at 50 degrees C. The closest relatives to these bacteria come from warm subsurface petroleum reservoir and ocean crust ecosystems, suggesting that seabed fluid flow from these environments is delivering thermophiles to the cold ocean. These transport pathways may broadly influence microbial community composition in the marine environment.

The occurrence and distribution of uronic acids and sugar methyl ethers in sediment trap materials and sediments of two coastal marine environments

NASA Astrophysics Data System (ADS)

Bergamaschi, Brian A.; Walters, Jeffrey S.; Hedges, John I.

1999-02-01

Although recent research has indicated that bacteria may contribute an important fraction of biochemical residues in terrestrial and marine environments, it is difficult for geochemists to identify contributions from these ubiquitous and biochemically diverse organisms. Previous studies have suggested uronic acids and O-methyl sugars may be useful indicators of microbial abundance and activity, but have been limited primarily to analyses of a small number of isolated samples. We report here comparative distributions of O-methyl sugars, uronic acids, and aldoses in sediment trap material and sediments from Dabob Bay, WA and nearby Saanich Inlet, BC, where temporal and spatial trends may be used together with well-established patterns in other biochemicals to identify bacterial contributions against the background of other carbohydrate sources. O-methyl sugars and uronic acids were important contributors to the overall flux and burial of polysaccharide material in Dabob Bay and Saanich Inlet, composing ≤12 wt% of the total carbohydrate yields from sediment trap and sediment samples. O-methyl sugars accounted for an average of 5% of the carbohydrate yields from sediment trap materials and sediments, but were found rarely and only in low abundance in vascular plant tissues, phytoplankton, and kelp. In contrast, uronic acids were abundant products of sediment trap material and sediments, as well as vascular plant tissues, where in some cases they predominated among all carbohydrates. Uronic acid abundance in sediment trap material averaged 3% and ranged to >6% of total carbohydrate yields. The persistence of total minor sugar yields in water column collections from Dabob Bay throughout the seasonal cycle indicated they had a primary source that was not directly related to plankton bloom cycles nor pulsed inputs of vascular plant remains. Subsurface maxima in total minor sugar yields (and several individual components) within sediment cores from both sites indicate in situ sedimentary sources. Taken together, the observed environmental distributions strongly suggest that the minor sugar abundances in Dabob Bay and Saanich Inlet were controlled by in situ microbial production.

Modelling the reworking effects of bioturbation on the incorporation of radionuclides into the sediment column: implications for the fate of particle-reactive radionuclides in Irish Sea sediments.

PubMed

Cournane, S; León Vintró, L; Mitchell, P I

2010-11-01

A microcosm laboratory experiment was conducted to determine the impact of biological reworking by the ragworm Nereis diversicolor on the redistribution of particle-bound radionuclides deposited at the sediment-water interface. Over the course of the 40-day experiment, as much as 35% of a (137)Cs-labelled particulate tracer deposited on the sediment surface was redistributed to depths of up to 11 cm by the polychaete. Three different reworking models were employed to model the profiles and quantify the biodiffusion and biotransport coefficients: a gallery-diffuser model, a continuous sub-surface egestion model and a biodiffusion model. Although the biodiffusion coefficients obtained for each model were quite similar, the continuous sub-surface egestion model provided the best fit to the data. The average biodiffusion coefficient, at 1.8 +/- 0.9 cm(2) y(-1), is in good agreement with the values quoted by other workers on the bioturbation effects of this polychaete species. The corresponding value for the biotransport coefficient was found to be 0.9 +/- 0.4 cm y(-1). The effects of non-local mixing were incorporated in a model to describe the temporal evolution of measured (99)Tc and (60)Co radionuclide sediment profiles in the eastern Irish Sea, influenced by radioactive waste discharged from the Sellafield reprocessing plant. Reworking conditions in the sediment column were simulated by considering an upper mixed layer, an exponentially decreasing diffusion coefficient, and appropriate biotransport coefficients to account for non-local mixing. The diffusion coefficients calculated from the (99)Tc and (60)Co cores were in the range 2-14 cm(2) y(-1), which are consistent with the values found by other workers in the same marine area, while the biotransport coefficients were similar to those obtained for a variety of macrobenthic organisms in controlled laboratories and field studies.

Microbes, Minerals and Electrodes at the Sanford Underground Research Facility (SURF): Electrochemistry 4100 ft below the surface.

NASA Astrophysics Data System (ADS)

Rowe, A. R.; Abuyen, K.; Casar, C. P.; Osburn, M. R.; Kruger, B.; El-Naggar, M.; Amend, J.

2017-12-01

Little is known about the importance of mineral oxidation processes in subsurface environments. This stems, in part from our limited insight into the biochemistry of many of these metabolisms, especially where redox interactions with solid surfaces is concerned. To this aim, we have been developing electrochemical cultivation techniques, to target enrichment and isolation of microbes capable of oxidative extracellular electron transfer (oxEET)—transfer of electrons from the exterior of the cell to the interior. Our previous worked focused on marine sediments; using an electrode poised at a given redox potential to isolate mineral-oxidizing microbes. Electrode oxidizing microbes isolated from these enrichments belong to the genera Thioclava, Marinobacter, Halomonas, Idiomarina, Thalassospira, and Pseudamonas; organisms commonly detected in marine and deep sea sediments but not generally associated with mineral, sulfur and/or iron oxidation. At the Sanford Underground Research Facility (SURF) in Leed, South Dakota, we have been utilizing similar electrocultivation techniques to understand: 1) the potential for mineral oxidation by subsurface microbes, 2) their selective colonization on mineral vs. electrode surfaces, as well as 3) the community composition of microbes capable of these metabolic interactions. An electrochemical and mineral enrichment scheme was designed and installed into a sulfidic groundwater flow, located at the 4100 ft level of the former gold mine. The communities enriched on electrodes (graphite and indium tin oxide coated glass) and minerals (sulfur, pyrite, and schists from the location) were compared to the long-term ground water microbial community observed. Ultimately, these observations will help inform the potential activity of a lithotrophic microbes in situ and will in turn guide our culturing efforts.

Life strategies of a ubiquitous and abundant subsurface archaeal group Bathyarchaeota

NASA Astrophysics Data System (ADS)

He, Y.; Li, M.; Perumal, V.; Feng, X.; Sievert, S. M.; Wang, F.

2015-12-01

Archaea belonging to the Miscellaneous Crenarchaeota Group (MCG, "Candidatus Bathyarchaeota") are widespread and abundant in the deep biosphere, yet their life strategies and ecological roles remain elusive. Metagenomic sequencing of a sample enriched in Bathyarchaeota (up to 74%) that originated from Guaymas Basin deep-sea vent sediments revealed 6 partial to nearly completed Bathyarchaeota genomic bins. ranging ~900kb-3.3Mb. The Bathyarchaeota bin size ranged from approximately 0.9 to 3.3 Mb, with coverage ranging from approximately 10× to 28×. The phylogeny based on 110 concatenated conserved archaeal single copy genes confirmed the placement of Bathyarchaeota into a novel archaeal phylum. Genes encoding for enzymes involved in the degradation of organic polymers such as protein, cellulose, chitin, and aromatic compounds, were identified. In addition, genes encoding glycolysis/gluconeogenesis, beta-oxidation pathways and the tricarboxylic acid cycle (except citrate synthase) were present in all genomic bins highlighting the heterotrophic life style of Bathyarchaeota. The presence of a wide variety of transporters of organic compounds further supports the versatile heterotrophic metabolism of Bathyarchaeota. This study highlights the life strategies of a ubiquitous and abundant subsurface archaeal group that thrives under energy-limited conditions, and expands the metabolic potentials of Archaea that play important roles in carbon cycling in marine sediments.

Archive of ground penetrating radar data collected during USGS field activity 13BIM01—Dauphin Island, Alabama, April 2013

USGS Publications Warehouse

Forde, Arnell S.; Smith, Christopher G.; Reynolds, Billy J.

2016-03-18

From April 13 to 20, 2013, scientists from the U.S. Geological Survey St. Petersburg Coastal and Marine Science Center (USGS-SPCMSC) conducted geophysical and sediment sampling surveys on Dauphin Island, Alabama, as part of Field Activity 13BIM01. The objectives of the study were to quantify inorganic and organic accretion rates in back-barrier and mainland marsh and estuarine environments. Various field and laboratory methods were used to achieve these objectives, including subsurface imaging using Ground Penetrating Radar (GPR), sediment sampling, lithologic and microfossil analyses, and geochronology techniques to produce barrier island stratigraphic cross sections to help interpret the recent (last 2000 years) geologic evolution of the island.This data series report is an archive of GPR and associated Global Positioning System (GPS) data collected in April 2013 from Dauphin Island and adjacent barrier-island environments. In addition to GPR data, marsh core and vibracore data were also collected collected but are not reported (or included) in the current report. Data products, including elevation-corrected subsurface profile images of the processed GPR data, unprocessed digital GPR trace data, post-processed GPS data, Geographic Information System (GIS) files and accompanying Federal Geographic Data Committee (FGDC) metadata, can be downloaded from the Data Downloads page.

Mechanisms of Arsenic Mobilization and Attenuation in Subsurface Sediments

NASA Astrophysics Data System (ADS)

O'Day, P. A.; Illera, V.; Root, R.; Choi, S.; Vlassopoulos, D.

2007-12-01

This talk will review molecular mechanisms of As mobilization and attenuation in subsurface sediments using examples from recent field studies that represent a range in oxidation-redox (redox) potential. As a ubiquitous trace element in sediments, As speciation and fate is linked to the abundance and biogeochemical behavior of the generally more abundant redox-active elements Fe, S, and Mn. All four elements are subject to oxidation, reduction, and pH-dependent processes such as sorption, desorption, precipitation, and dissolution, and which may include both biotic and abiotic reaction steps. We have used spectroscopic interrogation and geochemical modeling to characterize As speciation in subsurface sediments in several contrasting environments, including high and low S and Fe settings. Aquifers most at risk for contamination by As include those that are rich in organic matter and nutrients, stimulating high rates of microbial reduction and creating anoxic conditions, but limited in labile or available S and/or Fe that remove As by precipitation or adsorption. In subsurface sediments with low labile S and Fe, laboratory experiments and spectroscopic studies suggest that sediment Mn minerals are important in the oxidation of sorbed As(III) to As(V), but that they have a limited oxidation capacity. Arsenic attenuation and mobilization in the subsurface are affected by seasonal variations when hydraulic conditions are influenced by surface infiltration, which may induce transitions from oxidized to reduced conditions (or vice versa) in porewater.

Mercury distribution in ancient and modern sediment of northeastern Bering Sea

USGS Publications Warehouse

Nelson, C.H.; Pierce, D.E.; Leong, K.W.; Wang, F.F.H.

1975-01-01

Reconnaissance sampling of surface and subsurface sediment to a maximum depth of 80 m below the sea floor shows that typical values of 0.03 p.p.m. and anomalies of 0.2-1.3 p.p.m. mercury have been present in northeastern Bering Sea since Early Pliocene time. Values are highest in modern beach (maximum 1.3 and mean 0.22 p.p.m. Hg) and nearshore subsurface gravels (maximum 0.6 and mean 0.06 p.p.m. Hg) along the highly mineralized Seward Peninsula and in clayey silt rich in organic matter (maximum 0.16 and mean 0.10 p.p.m. Hg) throughout the region. Although gold mining may be partly responsible for high mercury levels in the modern beach near Nome, Alaska (maximum 0.45 p.p.m.), equally high or greater concentrations of mercury occur in buried Pleistocene sediments immediately offshore (maximum 0.6 p.p.m.) and in modern unpolluted beach sediments at Bluff (maximum 1.3 p.p.m.); this suggests that the contamination effects of mining may be no greater than natural concentration processes in the Seward Peninsula region. The mercury content of offshore surface sediment, even adjacent to mercury-rich beaches, corresponds to that of unpolluted marine and fresh-water sediment elsewhere. The normal values that prevail offshore may be attributable to entrapment of mercury-bearing heavy minerals on beaches near sources and/or dilution effects of offshore sedimentation. The few minor anomalies offshore occur in glacial drift derived from mercury source regions of Chukotka (Siberia) and Seward Peninsula; Pleistocene shoreline processes have reworked the drift to concentrate the heavy metals. The distribution pattern of mercury indicates that particulate mercury-bearing minerals have not been widely dispersed from onland deposits in quantities sufficient to increase mercury levels above normal in offshore sediments of Bering Sea; however, it shows that natural sedimentary processes can concentrate this mercury in beaches of the coastal zone where there already is concern because of potential pollution from man's activities.

Meta-Analysis of Quantification Methods Shows that Archaea and Bacteria Have Similar Abundances in the Subseafloor

PubMed Central

May, Megan K.; Kevorkian, Richard T.; Steen, Andrew D.

2013-01-01

There is no universally accepted method to quantify bacteria and archaea in seawater and marine sediments, and different methods have produced conflicting results with the same samples. To identify best practices, we compiled data from 65 studies, plus our own measurements, in which bacteria and archaea were quantified with fluorescent in situ hybridization (FISH), catalyzed reporter deposition FISH (CARD-FISH), polyribonucleotide FISH, or quantitative PCR (qPCR). To estimate efficiency, we defined “yield” to be the sum of bacteria and archaea counted by these techniques divided by the total number of cells. In seawater, the yield was high (median, 71%) and was similar for FISH, CARD-FISH, and polyribonucleotide FISH. In sediments, only measurements by CARD-FISH in which archaeal cells were permeabilized with proteinase K showed high yields (median, 84%). Therefore, the majority of cells in both environments appear to be alive, since they contain intact ribosomes. In sediments, the sum of bacterial and archaeal 16S rRNA gene qPCR counts was not closely related to cell counts, even after accounting for variations in copy numbers per genome. However, qPCR measurements were precise relative to other qPCR measurements made on the same samples. qPCR is therefore a reliable relative quantification method. Inconsistent results for the relative abundance of bacteria versus archaea in deep subsurface sediments were resolved by the removal of CARD-FISH measurements in which lysozyme was used to permeabilize archaeal cells and qPCR measurements which used ARCH516 as an archaeal primer or TaqMan probe. Data from best-practice methods showed that archaea and bacteria decreased as the depth in seawater and marine sediments increased, although archaea decreased more slowly. PMID:24096423

Cellular content of biomolecules in sub-seafloor microbial communities

NASA Astrophysics Data System (ADS)

Braun, Stefan; Morono, Yuki; Becker, Kevin W.; Hinrichs, Kai-Uwe; Kjeldsen, Kasper U.; Jørgensen, Bo B.; Lomstein, Bente Aa.

2016-09-01

Microbial biomolecules, typically from the cell envelope, can provide crucial information about distribution, activity, and adaptations of sub-seafloor microbial communities. However, when cells die these molecules can be preserved in the sediment on timescales that are likely longer than the lifetime of their microbial sources. Here we provide for the first time measurements of the cellular content of biomolecules in sedimentary microbial cells. We separated intact cells from sediment matrices in samples from surficial, deeply buried, organic-rich, and organic-lean marine sediments by density centrifugation. Amino acids, amino sugars, muramic acid, and intact polar lipids were analyzed in both whole sediment and cell extract, and cell separation was optimized and evaluated in terms of purity, separation efficiency, taxonomic resemblance, and compatibility to high-performance liquid chromatography and mass spectrometry for biomolecule analyses. Because cell extracts from density centrifugation still contained considerable amounts of detrital particles and non-cellular biomolecules, we further purified cells from two samples by fluorescence-activated cell sorting (FACS). Cells from these highly purified cell extracts had an average content of amino acids and lipids of 23-28 fg cell-1 and 2.3 fg cell-1, respectively, with an estimated carbon content of 19-24 fg cell-1. In the sediment, the amount of biomolecules associated with vegetative cells was up to 70-fold lower than the total biomolecule content. We find that the cellular content of biomolecules in the marine subsurface is up to four times lower than previous estimates. Our approach will facilitate and improve the use of biomolecules as proxies for microbial abundance in environmental samples and ultimately provide better global estimates of microbial biomass.

Subsurface dolomite formation during post-depositional flow of sulphate-bearing fluids from underlying salt giants: Early Pliocene example at DSDP Leg 42A, Site 374, Ionian Abyssal Plain

NASA Astrophysics Data System (ADS)

McKenzie, Judith A.; Evans, Nick; Hodell, David; Aloisi, Giovanni; Vasconcelos, Crisogono

2017-04-01

Deciphering exact mechanisms for the formation of massive dolomite deposits has long been an enigma in sedimentary geology. The recognition that microbes can play a role in the dolomite precipitation process has added a new dimension to the study of the origin of dolomite formations in both shallow and deep-water environments. This scientific advance has evolved, particularly, through the investigation of dolomite-containing, organic-rich hemipelagic sediments cored on various continental margins during DSDP and ODP drilling campaigns, as well as intensive evaluations of modern hypersaline dolomite-precipitating environments with complementary culture experiments conducted in the laboratory. For example, the association of an active subsurface microbial community in contact with underlying brines of unknown origin leading to in situ dolomite precipitation has been observed in a Quaternary sequence of hemi-pelagic, organic carbon-rich sediments drilled on the Peru Margin, ODP Leg 201, Site 1229 (1). Specifically, it can be concluded that the long-term activity of subsurface microbes can be maintained by post-depositional flow of sulfate-bearing fluids from underlying large-scale evaporite deposits, or salt giants, promoting in situ dolomite precipitation. Another example of dolomite precipitation directly associated with the underlying Messinian salt giant was found at DSDP Leg 42A, Site 374 in the Ionian Abyssal Plain. Deep-sea drilling recovered a lowermost Pliocene sequence of diagenetically altered sediment (Unit II) separating the overlying Pliocene open-marine deposits (Unit I) and the underlying end Messinian dolomitic mudstone with gypsum layers (Unit III). The lower portion of this altered interval contained in Core 11, Section 2 (378.0 - 381.5 mbsf) comprises a dolomicrite with an unusual crystal morphology (2). The original interstitial water geochemical profiles indicate that a saline brine is diffusing upwards from below and into the dolomicrite sequence. There appears to be on-going bacterial sulfate reduction in this boundary zone between the evaporitic and normal pelagic sediments with a significant decrease in sulfate concentrations, whereas the chloride profile remains constant. It was concluded that the earliest Pliocene marine sediments of Unit II had been dolomitized after burial as a consequence of ionic migration across a steep Mg-concentration gradient (3). However, with the addition of a microbial factor into the study of the dolomite precipitation process, an alternate interpretation is possible. We propose that, at the location of DSDP Leg 42A, Site 374, modern subsurface dolomite precipitation is ongoing and the site is a "natural laboratory" in which to investigate the microbial phenomenon in the context of a giant evaporite deposit. This actualistic example may provide a new model for the origin of massive dolomite deposits associated with other salt giants in the rock record. (1) Meister, P., et al., 2007. Sedimentology, 54, 1007-1031. (2) Bernoulli, D. & Mélières, F., 1978. In: Hsü, K., Montadert, L. et al., 1978. Initial Reports of the Deep Sea Drilling Project, Volume 42, Part 1, 621-633. (3) McDuff, R.E., et al., 1978. In: Hsü, K., Montadert, L. et al., 1978. Initial Reports of the Deep Sea Drilling Project, Volume 42, Part 1, 561-568.

Microbial production and oxidation of methane in deep subsurface

NASA Astrophysics Data System (ADS)

Kotelnikova, Svetlana

2002-10-01

The goal of this review is to summarize present studies on microbial production and oxidation of methane in the deep subterranean environments. Methane is a long-living gas causing the "greenhouse" effect in the planet's atmosphere. Earlier, the deep "organic carbon poor" subsurface was not considered as a source of "biogenic" methane. Evidence of active methanogenesis and presence of viable methanogens including autotrophic organisms were obtained for some subsurface environments including water-flooded oil-fields, deep sandy aquifers, deep sea hydrothermal vents, the deep sediments and granitic groundwater at depths of 10 to 2000 m below sea level. As a rule, the deep subterranean microbial populations dwell at more or less oligotrophic conditions. Molecular hydrogen has been found in a variety of subsurface environments, where its concentrations were significantly higher than in the tested surface aquatic environments. Chemolithoautotrophic microorganisms from deep aquifers that could grow on hydrogen and carbon dioxide can act as primary producers of organic carbon, initiating heterotrophic food chains in the deep subterranean environments independent of photosynthesis. "Biogenic" methane has been found all over the world. On the basis of documented occurrences, gases in reservoirs and older sediments are similar and have the isotopic character of methane derived from CO 2 reduction. Groundwater representing the methanogenic end member are characterized by a relative depletion of dissolved organic carbon (DOC) in combination with an enrichment in 13C in inorganic carbon, which is consistent with the preferential reduction of 12CO 2 by autotrophic methanogens or acetogens. The isotopic composition of methane formed via CO 2 reduction is controlled by the δ13C of the original CO 2 substrate. Literature data shows that CH 4 as heavy as -40‰ or -50‰ can be produced by the microbial reduction of isotopically heavy CO 2. Produced methane may be oxidized microbially to carbon dioxide. Microbial methane oxidation is a biogeochemical process that limits the release of methane, a greenhouse gas from anaerobic environments. Anaerobic methane oxidation plays an important role in marine sediments. Similar processes may take place in deep subsurface and thus fuel the deep microbial community. Organisms or consortia responsible for anaerobic methane oxidation have not yet been cultured, although diverse aerobic methanotrophs have been isolated from a variety of underground niches. The presence of aerobic methanotrophs in the anoxic subsurface remains to be explained. The presence of methane in the deep subsurface have been shown all over the world. The flux of gases between the deep subsurface and the atmosphere is driven by the concentration gradient from depth to the atmosphere. However, methane is consumed by methanotrophs on the way of its evolution in oxidized environments and is transformed to organic form, available for further microbial processing. When the impact of subsurface environments to global warming is estimated, it is necessary to take into account the activity of methane-producing Archaea and methane-oxidizing biofilters in groundwater. Microbial production and oxidation of methane is involved in the carbon cycle in the deep subsurface environments.

Biodiversity of polycyclic aromatic hydrocarbon-degrading bacteria from deep sea sediments of the Middle Atlantic Ridge.

PubMed

Cui, Zhisong; Lai, Qiliang; Dong, Chunming; Shao, Zongze

2008-08-01

The bacteria involved in the biodegradation of polycyclic aromatic hydrocarbons (PAHs) in deep sea subsurface environments are largely unknown. In order to reveal their biodiversity, sediments from 2.2 m under the bottom surface at a water depth of 3542 m were sampled on the Middle Atlantic Ridge with a gravity column sampler. The sediments were promptly enriched with either crude oil or a mixture of PAHs (naphthalene, phenanthrene and pyrene) as the sole carbon source, and further enriched with the PAH mixture mentioned above in the lab. The resulting consortia were named C2CO and C2PPN respectively. Their bacterial composition was analysed with plate cultivation, PCR-DGGE and 16S rDNA library analysis. On plates, isolates belonging to Pseudoalteromonas, Halomonas, Marinobacter, Thalassospira and Tistrella dominated the culturable populations. With PCR-DGGE, five major bands closely related to Cycloclasticus, Alteromonas, Thalassospira, Alcanivorax and Rhodospirillaceae were detected in consortium C2CO, while only one major band of Cycloclasticus was detected in consortium C2PPN. In addition, the dynamics of community structure in response to aromatic substrate alterations were examined. As a result, three ribotypes of Cycloclasticus were detected by 16S rDNA library analysis, one which played a key role in phenanthrene degradation; two Alteromonas bacteria dominated the naphthalene reselected consortium. Although bacteria of the two genera grew as the main members of the communities, none of them were isolated, probably owing to their poor cultivability. These results confirm that bacteria of Cycloclasticus are important obligate PAH degraders in marine environments, and coexist with other degrading bacteria that inhabit the deep subsurface sediment of the Atlantic. This supports the view that PAH accumulation and bioattenuation occur in remote areas consistently and continuously.

Biodiversity of polycyclic aromatic hydrocarbon-degrading bacteria from deep sea sediments of the Middle Atlantic Ridge

PubMed Central

Cui, Zhisong; Lai, Qiliang; Dong, Chunming; Shao, Zongze

2008-01-01

The bacteria involved in the biodegradation of polycyclic aromatic hydrocarbons (PAHs) in deep sea subsurface environments are largely unknown. In order to reveal their biodiversity, sediments from 2.2 m under the bottom surface at a water depth of 3542 m were sampled on the Middle Atlantic Ridge with a gravity column sampler. The sediments were promptly enriched with either crude oil or a mixture of PAHs (naphthalene, phenanthrene and pyrene) as the sole carbon source, and further enriched with the PAH mixture mentioned above in the lab. The resulting consortia were named C2CO and C2PPN respectively. Their bacterial composition was analysed with plate cultivation, PCR-DGGE and 16S rDNA library analysis. On plates, isolates belonging to Pseudoalteromonas, Halomonas, Marinobacter, Thalassospira and Tistrella dominated the culturable populations. With PCR-DGGE, five major bands closely related to Cycloclasticus, Alteromonas, Thalassospira, Alcanivorax and Rhodospirillaceae were detected in consortium C2CO, while only one major band of Cycloclasticus was detected in consortium C2PPN. In addition, the dynamics of community structure in response to aromatic substrate alterations were examined. As a result, three ribotypes of Cycloclasticus were detected by 16S rDNA library analysis, one which played a key role in phenanthrene degradation; two Alteromonas bacteria dominated the naphthalene reselected consortium. Although bacteria of the two genera grew as the main members of the communities, none of them were isolated, probably owing to their poor cultivability. These results confirm that bacteria of Cycloclasticus are important obligate PAH degraders in marine environments, and coexist with other degrading bacteria that inhabit the deep subsurface sediment of the Atlantic. This supports the view that PAH accumulation and bioattenuation occur in remote areas consistently and continuously. PMID:18445026

Volatile hydrocarbons inhibit methanogenic crude oil degradation

PubMed Central

Sherry, Angela; Grant, Russell J.; Aitken, Carolyn M.; Jones, D. Martin; Head, Ian M.; Gray, Neil D.

2014-01-01

Methanogenic degradation of crude oil in subsurface sediments occurs slowly, but without the need for exogenous electron acceptors, is sustained for long periods and has enormous economic and environmental consequences. Here we show that volatile hydrocarbons are inhibitory to methanogenic oil biodegradation by comparing degradation of an artificially weathered crude oil with volatile hydrocarbons removed, with the same oil that was not weathered. Volatile hydrocarbons (nC5–nC10, methylcyclohexane, benzene, toluene, and xylenes) were quantified in the headspace of microcosms. Aliphatic (n-alkanes nC12–nC34) and aromatic hydrocarbons (4-methylbiphenyl, 3-methylbiphenyl, 2-methylnaphthalene, 1-methylnaphthalene) were quantified in the total hydrocarbon fraction extracted from the microcosms. 16S rRNA genes from key microorganisms known to play an important role in methanogenic alkane degradation (Smithella and Methanomicrobiales) were quantified by quantitative PCR. Methane production from degradation of weathered oil in microcosms was rapid (1.1 ± 0.1 μmol CH4/g sediment/day) with stoichiometric yields consistent with degradation of heavier n-alkanes (nC12–nC34). For non-weathered oil, degradation rates in microcosms were significantly lower (0.4 ± 0.3 μmol CH4/g sediment/day). This indicated that volatile hydrocarbons present in the non-weathered oil inhibit, but do not completely halt, methanogenic alkane biodegradation. These findings are significant with respect to rates of biodegradation of crude oils with abundant volatile hydrocarbons in anoxic, sulphate-depleted subsurface environments, such as contaminated marine sediments which have been entrained below the sulfate-reduction zone, as well as crude oil biodegradation in petroleum reservoirs and contaminated aquifers. PMID:24765087

National Uranium Resource Evaluation: Palestine Quadrangle, Texas and Louisiana

DOE Office of Scientific and Technical Information (OSTI.GOV)

McGowen, M.; Basciano, J.; Fose, F.G. Jr.

1982-09-01

The uranium resource potential of the Palestine Quadrangle, Texas and Louisiana, was evaluated to a depth of 1500 m (5000 ft) using criteria established for the National Uranium Resource Evaluation program. Data derived from geochemical analyses of surface samples (substrate, soil, and stream sediment) in conjunction with hydrochemical data from water wells were used to evaluate geologic environments as being favorable or unfavorable for the occurrence of uranium deposits. Two favorable environments have been identified in the Palestine Quadrangle: potential deposits of modified Texas roll-type in fluvial channels and associated facies within the Yegua Formation, and potential occurrences along mineralizationmore » fronts associated with the Elkhart Graben and Mount Enterprise fault system. Unfavorable environments include: Cretaceous shales and limestones, Tertiary fine-grained marine sequences, Tertiary sandstone units that exhibit favorable host-rock characteristics but fail to show significant syngenetic or epigenetic mineralization, and Quaternary sands and gravels. Unevaluated units include the Woodbine Group (Upper Cretaceous), Jackson Group (Tertiary), and Catahoula Formation (Tertiary). The subsurface interval of the Jackson Group and Catahoula Formation contains depositional facies that may represent favorable environments; however, the evaluation of these units is inconclusive because of the general lack of shallow subsurface control and core material. The Woodbine Group, restricted to the subsurface except for a small exposure over Palestine Dome, occurs above 1500 m (5000 ft) in the northwest quarter of the quadrangle. The unit exhibits favorable host-rock characteristics, but the paucity of gamma logs and cores, as well as the lack of hydrogeochemical and stream-sediment reconnaissance data, makes evaluation of the unit difficult.« less

Improved measurement of extracellular enzymatic activities in subsurface sediments using competitive desorption treatment

NASA Astrophysics Data System (ADS)

Hoarfrost, Adrienne; Snider, Rachel; Arnosti, Carol

2017-02-01

Extracellular enzymatic activities initiate microbially-driven heterotrophic carbon cycling in subsurface sediments. While measurement of hydrolytic activities in sediments is fundamental to our understanding of carbon cycling, these measurements are often technically difficult due to sorption of organic substrates to the sediment matrix. Most methods that measure hydrolysis of organic substrates in sediments rely on recovery of a fluorophore or fluorescently-labeled target substrate from a sediment incubation. The tendency for substrates to sorb to sediments results in lower recovery of an added substrate, and can result in data that are unusable or difficult to interpret. We developed a treatment using competitive desorption of a fluorescently-labeled, high molecular weight organic substrate that improves recovery of the labeled substrate from sediment subsamples. Competitive desorption treatment improved recovery of the fluorescent substrate by a median of 66%, expanded the range of sediments for which activity measurements could be made, and was effective in sediments from a broad range of geochemical contexts. More reliable measurements of hydrolytic activities in sediments will yield usable and more easily interpretable data from a wider range of sedimentary environments, enabling better understanding of microbially-catalyzed carbon cycling in subsurface environments.

Variability in aerobic methane oxidation over the past 1.2 Myrs recorded in microbial biomarker signatures from Congo fan sediments

NASA Astrophysics Data System (ADS)

Talbot, Helen M.; Handley, Luke; Spencer-Jones, Charlotte L.; Dinga, Bienvenu Jean; Schefuß, Enno; Mann, Paul J.; Poulsen, John R.; Spencer, Robert G. M.; Wabakanghanzi, Jose N.; Wagner, Thomas

2014-05-01

Methane (CH4) is a strong greenhouse gas known to have perturbed global climate in the past, especially when released in large quantities over short time periods from continental or marine sources. It is therefore crucial to understand and, if possible, quantify the individual and combined response of these variable methane sources to natural climate variability. However, past changes in the stability of greenhouse gas reservoirs remain uncertain and poorly constrained by geological evidence. Here, we present a record from the Congo fan of a highly specific bacteriohopanepolyol (BHP) biomarker for aerobic methane oxidation (AMO), 35-aminobacteriohopane-30,31,32,33,34-pentol (aminopentol), that identifies discrete periods of increased AMO as far back as 1.2 Ma. Fluctuations in the concentration of aminopentol, and other 35-aminoBHPs, follow a pattern that correlates with late Quaternary glacial-interglacial climate cycles, with highest concentrations during warm periods. We discuss possible sources of aminopentol, and the methane consumed by the precursor methanotrophs, within the context of the Congo River setting, including supply of methane oxidation markers from terrestrial watersheds and/or marine sources (gas hydrate and/or deep subsurface gas reservoir). Compound-specific carbon isotope values of -30‰ to -40‰ for BHPs in ODP 1075 and strong similarities between the BHP signature of the core and surface sediments from the Congo estuary and floodplain wetlands from the interior of the Congo River Basin, support a methanotrophic and likely terrigenous origin of the 35-aminoBHPs found in the fan sediments. This new evidence supports a causal connection between marine sediment BHP records of tropical deep sea fans and wetland settings in the feeding river catchments, and thus tropical continental hydrology. Further research is needed to better constrain the different sources and pathways of methane emission. However, this study identifies the large potential of aminoBHPs, in particular aminopentol, to trace and, once better calibrated and understood, quantify past methane sources and fluxes from terrestrial and potentially also marine sources.

Geophysical and sampling data from the inner continental shelf: Duxbury to Hull, Massachusetts

USGS Publications Warehouse

Barnhardt, Walter A.; Ackerman, Seth D.; Andrews, Brian D.; Baldwin, Wayne E.

2010-01-01

The U.S. Geological Survey (USGS) and the Massachusetts Office of Coastal Zone Management (CZM) have cooperated to map approximately 200 km² of the Massachusetts inner continental shelf between Duxbury and Hull. This report contains geophysical and geological data collected by the USGS on three cruises between 2006 and 2007. These USGS data are supplemented with a National Oceanic and Atmospheric Administration (NOAA) hydrographic survey conducted in 2003 to update navigation charts. The geophysical data include (1) swath bathymetry from interferometric sonar and multibeam echosounders, (2) acoustic backscatter from sidescan sonar and multibeam echosounders, and (3) subsurface stratigraphy and structure from seismic-reflection profilers. The geological data include sediment samples, seafloor photographs, and bottom videos. These spatial data support research on the influence sea-level change and sediment supply have on coastal evolution, and on efforts to understand the type, distribution, and quality of subtidal marine habitats in the Massachusetts coastal ocean.

Gene expression in the deep biosphere.

PubMed

Orsi, William D; Edgcomb, Virginia P; Christman, Glenn D; Biddle, Jennifer F

2013-07-11

Scientific ocean drilling has revealed a deep biosphere of widespread microbial life in sub-seafloor sediment. Microbial metabolism in the marine subsurface probably has an important role in global biogeochemical cycles, but deep biosphere activities are not well understood. Here we describe and analyse the first sub-seafloor metatranscriptomes from anaerobic Peru Margin sediment up to 159 metres below the sea floor, represented by over 1 billion complementary DNA (cDNA) sequence reads. Anaerobic metabolism of amino acids, carbohydrates and lipids seem to be the dominant metabolic processes, and profiles of dissimilatory sulfite reductase (dsr) transcripts are consistent with pore-water sulphate concentration profiles. Moreover, transcripts involved in cell division increase as a function of microbial cell concentration, indicating that increases in sub-seafloor microbial abundance are a function of cell division across all three domains of life. These data support calculations and models of sub-seafloor microbial metabolism and represent the first holistic picture of deep biosphere activities.

The Baselines Project: Establishing Reference Environmental Conditions for Marine Habitats in the Gulf of Mexico using Forecast Models and Satellite Data

NASA Astrophysics Data System (ADS)

Jolliff, J. K.; Gould, R. W.; deRada, S.; Teague, W. J.; Wijesekera, H. W.

2012-12-01

We provide an overview of the NASA-funded project, "High-Resolution Subsurface Physical and Optical Property Fields in the Gulf of Mexico: Establishing Baselines and Assessment Tools for Resource Managers." Data assimilative models, analysis fields, and multiple satellite data streams were used to construct temperature and photon flux climatologies for the Flower Garden Banks National Marine Sanctuary (FGBNMS) and similar habitats in the northwestern Gulf of Mexico where geologic features provide a platform for unique coral reef ecosystems. Comparison metrics of the products to in situ data collected during complimentary projects are also examined. Similarly, high-resolution satellite-data streams and advanced processing techniques were used to establish baseline suspended sediment load and turbidity conditions in selected northern Gulf of Mexico estuaries. The results demonstrate the feasibility of blending models and data into accessible web-based analysis products for resource managers, policy makers, and the public.

Deep-Subsurface Marine Methane Hydrate Microbial Communities: Who's There and What Are They Doing?

NASA Astrophysics Data System (ADS)

Colwell, F.; Reed, D.; Fujita, Y.; Delwiche, M.; Blackwelder, D.; Uchida, T.; Fujii, T.; Lu, H.

2001-12-01

Natural gas hydrates are crystalline deposits of freshwater and primarily methane. They are estimated to represent a potentially vast reservoir of energy. Relatively little is known regarding microbial communities surrounding deep [>100 meters below sea floor (mbsf)] hydrate-bearing sediments. Deep sediment cores were collected in zones above, within, and below the hydrate bearing strata in an accretionary prism off the coast of Japan. Microorganisms were characterized using cultivation- and non-cultivation-based microbiological techniques to better understand the role that they play in the production and distribution of methane in gas hydrates. Direct counts show cell density at 105 cells/g throughout the hydrate strata. Lipid and 16S rDNA analyses indicate that diverse bacterial and archaeal microorganisms are represented throughout the strata. Acetate and hydrogen were utilized as an energy source for methane-producing microorganisms from each sediment depth. Although the methanogenic biomarker coenzyme M was not present above the detection limit in any of the samples, cloning and characterization of amplified 16S ribosomal RNA genes indicated the presence of methanogenic microorganisms related to the Methanobacteriales and Methanococcales. In addition, archaeal clones closely related to the hyperthermophilic Pyrodictiales were detected. Analysis of eubacterial clones indicated a more diverse eubacterial community compared to the archaea, including members from the groups of cyanobacteria, proteobacteria, gram positive bacteria, and flexibacter-cytophaga-bacteriodes. This study suggests that the diversity of microbial communities associated with the presence of methane in gas hydrate-rich deep marine sediments is greater than previously estimated.

Stratigraphy and sedimentation of Mississippian Ste. Genevieve-Cedar Bluff interval, Southwestern Indiana

DOE Office of Scientific and Technical Information (OSTI.GOV)

Breedon, D.; Droste, J.B.; Murray, H.H.

1983-09-01

The Ste. Genevieve Limestone and Cedar Bluff Group of Mississippian age, both important sources of hydrocarbons in the Illinois basin, were traced from a subsurface stratigraphic section in White County, Illinois (described by Swan in 1963, across Gibson and Daviess Counties, Indiana, using electric logs and sample descriptions from 84 wells. The Ste. Genevieve Limestone is subdivided into four members and the Cedar Bluff Group into three formations. Six cross sections and nine isopach maps based on 300 wells show that these units comprise a succession of alternating fine- and coarse-grained carbonate rocks with only minor interruptions of sandstone andmore » shale. Two complete coarsening-upward cycles are apparent, and a third cycle is incomplete. Each cycle consists of a lower sequence of lime mudstones and wackestones, and an upper sequence of oolitic and skeletal grainstones. These cycles are the record of successive shoaling-upward cycles of sedimentation on a shallow marine platform. The lower mudstone-wackestone sequence represents deposition in a shallow subtidal environment, and the upper oolitic-skeletal grainstone unit represents development of oolite shoals and tidal channels in very shallow waters. Terrigenous clastic sediments brought into the basin by the Michigan river periodically encroached into the marine environment. Dolomitization of the fine-grained carbonate sediments is largely restricted to areas which are overlain by oolitic grainstones. In eastern Daviess County, indentification of the individual stratigraphic units in this interval is somewhat tenuous, but tracing the units from eastern Illinois into Indiana made correlation and identification of the individual stratigraphic units possible by using electric logs and sample descriptions.« less

Delving into the Deep Biosphere

NASA Astrophysics Data System (ADS)

Grim, S. L.; Sogin, M. L.; Boetius, A.; Briggs, B. R.; Brazelton, W. J.; D'Hondt, S. L.; Edwards, K. J.; Fisk, M. R.; Gaidos, E.; Gralnick, J.; Hinrichs, K.; Lazar, C.; Lavalleur, H.; Lever, M. A.; Marteinsson, V.; Moser, D. P.; Orcutt, B.; Pedersen, K.; Popa, R.; Ramette, A.; Schrenk, M. O.; Sylvan, J. B.; Smith, A. R.; Teske, A.; Walsh, E. A.; Colwell, F. S.

2013-12-01

The Census of Deep Life organized an international survey of microbial community diversity in terrestrial and marine deep subsurface environments. Habitats included subsurface continental fractured rock aquifers, volcanic and metamorphic subseafloor sedimentary units from the open ocean, subsurface oxic and anoxic sediments and underlying basaltic oceanic crust, and their overlying water columns. Our survey employed high-throughput pyrosequencing of the hypervariable V4-V6 16S rRNA gene of bacteria and archaea. We detected 1292 bacterial genera representing 40 phyla, and 99 archaeal genera from 30 phyla. Of these, a core group of thirteen bacterial genera occurred in every environment. A genus of the South African Goldmine Group (Euryarchaeota) was always present whenever archaea were detected. Members of the rare biosphere in one system often represented highly abundant taxa in other environments. Dispersal could account for this observation but mechanisms of transport remain elusive. Ralstonia (Betaproteobacteria) represented highly abundant taxa in marine communities and terrestrial rock, but generally low abundance organisms in groundwater. Some of these taxa could represent sample contamination, and their extensive distribution in several systems requires further assessment. An unknown Sphingobacteriales (Bacteroidetes) genus, Stenotrophomonas (Gammaproteobacteria), Acidovorax and Aquabacterium (both Betaproteobacteria), a Chlorobiales genus, and a TM7 genus were in the core group as well but more prevalent in terrestrial environments. Similarly, Bacillus (Firmicutes), a new cyanobacterial genus, Bradyrhizobium and Sphingomonas (both Alphaproteobacteria), a novel Acidobacteriaceae genus, and Variovorax (Betaproteobacteria) frequently occurred in marine systems but represented low abundance taxa in other environments. Communities tended to cluster by biome and material, and many genera were unique to systems. For example, certain Rhizobiales (Alphaproteobacteria) only occurred in groundwater, and select Firmicutes and actinobacterial taxa were specific to rock environments. We continue to investigate the ecological and physiological context of these organisms. By combining deep sequencing of microbial communities and geochemical and physical evaluations of their environments, we bring to light the diversity and scope of the deep biosphere and insight into the factors that determine the nature of these communities.

Redox processes as revealed by voltammetry in the surface sediments of the Gotland Basin, Baltic Sea

NASA Astrophysics Data System (ADS)

Yücel, Mustafa; Dale, Andy; Sommer, Stefan; Pfannkuche, Olaf

2014-05-01

Sulfur cycling in marine sediments undergoes dramatic changes with changing redox conditions of the overlying waters. The upper sediments of the anoxic Gotland Basin, central Baltic Sea represent a dynamic redox environment with extensive mats of sulfide oxidizing bacteria covering the seafloor beneath the chemocline. In order to investigate sulfur redox cycling at the sediment-water interface, sediment cores were sampled over a transect covering 65 - 174 m water depth in August-September 2013. High resolution (0.25 mm minimum) vertical microprofiles of electroactive redox species including dissolved sulfide and iron were obtained with solid state Au-Hg voltammetric microelectrodes. This approach enabled a fine-scale comparison of porewater profiles across the basin. The steepest sulfide gradients (i.e. the highest sulfide consumption) occurred within the upper 10 mm in sediments covered by surficial mats (2.10 to 3.08 mmol m-2 day-1). In sediments under permanently anoxic waters (>140m), voltammetric signals for Fe(II) and aqueous FeS were detected below a subsurface maximum in dissolved sulfide, indicating a Fe flux originating from older, deeper sedimentary layers. Our results point to a unique sulfur cycling in the Gotland basin seafloor where sulfide accumulation is moderated by sulfide oxidation at the sediment surface and by FeS precipitation in deeper sediment layers. These processes may play an important role in minimizing benthic sulfide fluxes to bottom waters around the major basins of the Baltic Sea.

Nontoxic chemical process for in situ permeability enhancement and accelerated decontamination of fine-grain subsurface sediments

DOEpatents

Kansa, E.J.; Wijesinghe, A.M.; Viani, B.E.

1997-01-14

The remediation of heterogeneous subsurfaces is extremely time consuming and expensive with current and developing technologies. Although such technologies can adequately remove contaminants in the high hydraulic conductivity, coarse-grained sediments, they cannot access the contaminated low hydraulic conductivity fine-grained sediments. The slow bleed of contaminants from the fine-grained sediments is the primary reason why subsurface remediation is so time-consuming and expensive. This invention addresses the problem of remediating contaminated fine-grained sediments. It is intended that, in the future, a heterogeneous site be treated by a hybrid process that first remediates the high hydraulic conductivity, coarse-grained sediments, to be followed by the process, described in this invention, to treat the contaminated low hydraulic conductivity fine-grained sediments. The invention uses cationic flocculants and organic solvents to collapse the swelling negative double layer surrounding water saturated clay particles, causing a flocculated, cracked clay structure. The modification of the clay fabric in fine-grained sediments dramatically increases the hydraulic conductivity of previously very tight clays many orders of magnitude. 8 figs.

Nontoxic chemical process for in situ permeability enhancement and accelerated decontamination of fine-grain subsurface sediments

DOEpatents

Kansa, Edward J.; Wijesinghe, Ananda M.; Viani, Brian E.

1997-01-01

The remediation of heterogeneous subsurfaces is extremely time consuming and expensive with current and developing technologies. Although such technologies can adequately remove contaminants in the high hydraulic conductivity, coarse-grained sediments, they cannot access the contaminated low hydraulic conductivity fine-grained sediments. The slow bleed of contaminants from the fine-grained sediments is the primary reason why subsurface remediation is so time-consuming and expensive. This invention addresses the problem of remediating contaminated fine-grained sediments. It is intended that, in the future, a heterogeneous site be treated by a hybrid process that first remediates the high hydraulic conductivity, coarse-grained sediments, to be followed by the process, described in this invention, to treat the contaminated low hydraulic conductivity fine-grained sediments. The invention uses cationic flocculents and organic solvents to collapse the swelling negative double layer surrounding water saturated clay particles, causing a flocculated, cracked clay structure. The modification of the clay fabric in fine-grained sediments dramatically increases the hydraulic conductivity of previously very tight clays many orders of magnitude.

Single cell genomic study of dehalogenating Chloroflexi from deep sea sediments of Peruvian Margin

NASA Astrophysics Data System (ADS)

Spormann, A.; Kaster, A.; Meyer-Blackwell, K.; Biddle, J.

2012-12-01

Dehalogenating Chloroflexi, such as Dehalococcoidites (Dhc), are members of the rare biosphere of deep sea sediments but were originally discovered as the key microbes mediating reductive dehalogenation of the prevalent groundwater contaminants tetrachloroethene and trichloroethene to ethene. Dhc are slow growing, highly niche adapted microbes that are specialized to organohalide respiration as the sole mode of energy conservation. These strictly anaerobic microbes depend on a supporting microbial community to mitigate electron donor and cofactor requirements among other factors. Molecular and genomic studies on the key enzymes for energy conservation, reductive dehalogenases, have provided evidence for rapid adaptive evolution in terrestrial environments. However, the metabolic life style of Dhc in the absence of anthropogenic contaminants, such as in pristine deep sea sediments, is still unknown. In order to provide fundamental insights into life style, genomic population structure and evolution of Dhc, we analyzed a non-contaminated deep sea sediment sample of the Peru Margin 1230 site collected 6 mbf by a metagenomic and single cell genomic. We present for the first time single cell genomic data on dehalogenating Chloroflexi, a significant microbial population in the poorly understood oligotrophic marine sub-surface environments.

Single cell genomic study of dehalogenating Chloroflexi in deep sea sediments of Peru Margin 1230

NASA Astrophysics Data System (ADS)

Kaster, A.; Meyer-Blackwell, K.; Biddle, J.; Spormann, A.

2012-12-01

Dehalogenating Chloroflexi, such as Dehalococcoidites (Dhc), are members of the rare biosphere of deep sea sediments but were originally discovered as the key microbes mediating reductive dehalogenation of the prevalent groundwater contaminants tetrachloroethene and trichloroethene to ethene. Dhc are slow growing, highly niche adapted microbes that are specialized to organohalide respiration as the sole mode of energy conservation. They are strictly anaerobic microbes that depend on a supporting microbial community for electron donor and cofactor requirements among other factors. Molecular and genomic studies on the key enzymes for energy conservation, reductive dehalogenases, have provided evidence for rapid adaptive evolution in terrestrial environments. However, the metabolic life style of Dhc in the absence of anthropogenic contaminants, such as in pristine deep sea sediments, is still unknown. In order to provide fundamental insights into life style, genomic population structure and evolution of Dhc, we analyzed a non-contaminated deep sea sediment sample of the Peru Margin 1230 site collected 6 mbsf by a metagenomic and single cell genomic approach. We present for the first time single cell genomic data on dehalogenating Chloroflexi, a significant microbial population in the poorly understood oligotrophic marine sub-surface environment.

Bacterial Growth, Necromass Turnover, And Endospore Abundance In The Deep Subseafloor Sediments Of The Greenland Shelf Using D:L Amino Acid Model.

NASA Astrophysics Data System (ADS)

Mhatre, S. S.; Braun, S.; Jaussi, M.; Røy, H.; Jørgensen, B. B.; Lomstein, B. A.

2015-12-01

The subsurface realm is colonized by a large number of microorganisms- about 3 × 1029. Microbial cells in these very stable and oligotrophic settings catabolize at a much slower rate than model organisms in nutrient rich cultures. The aim of this work was to use recently developed D:L-amino acid racemization model for studying the turnover times of microbial biomass and microbial necromass in a ~12,000 years old Greenland shelf marine sediment samples. Sediments were analyzed for total hydrolysable amino acids (THAA), the bacterial endospore marker dipicolinic acid (DPA), and amino acid enantiomers of aspartic acid. The percentage amino acid carbon content (%TAAC) and the percentage amino acid nitrogen content (%TAAN) were used for determining the degradation state of the organic matter. Endospores quantified using DPA quantification method were found to be as abundant as vegetative cells. The microbial necromass turnover times were thousand years, and biomass turnover times were in the range of tens to hundred years. Studies with deeper sediment cores will further improve our understanding of the energetic limits of life in the deep biosphere.

Sediment Transport Capacity of Turbidity Currents: from Microscale to Geological Scale.

NASA Astrophysics Data System (ADS)

Eggenhuisen, J. T.; Tilston, M.; Cartigny, M.; Pohl, F.; de Leeuw, J.; van der Grind, G. J.

2016-12-01

A big question in sedimentology concerns the magnitude of fluxes of sediment particles, solute matter and dissolved gasses from shallow marine waters to deep basins by turbidity current flow. Here we establish sediment transport capacity of turbidity current flow on three levels. The most elementary level is set by the maximum amount of sediment that can be contained at the base of turbidity currents without causing complete extinction of boundary layer turbulence. The second level concerns the capacity in a vertical column within turbidity currents. The third level involves the amount of sediment that can be transported in turbidite systems on geological timescales. The capacity parameter Γ compares turbulent forces near the boundary of a turbulent suspension to gravity and buoyancy forces acting on suspended particles. The condition of Γ>1 coincides with complete suppression of coherent boundary layer turbulence in Direct Numerical Simulations of sediment-laden turbulent flow. Γ=1 coincides with the upper limit of observed suspended particle concentrations in flume and field measurements. Γ is grainsize independent, yet capacity of the full vertical structure of turbidity currents becomes grainsize dependent. This is due to the appearance of grainsize dependent vertical motions within turbulence as a primary control on the shape of the vertical concentration profile. We illustrate this dependence with experiments and theory and conclude that capacity depends on the competence of prevailing turbulence to suspend particle sizes. The concepts of capacity and competence are thus tangled. Finally, the capacity of turbidity current flow structure is coupled to geological constraints on recurrence times, channel and lobe life cycles, and allogenic forcing on system activity to arrive at system scale sediment transport capacity. We demonstrate a simple model that uses the fundamental process insight described above to estimate geological sediment budgets from architectural information. These predictions are tied to existing S2S analyses to constrain submarine channel and fan dimensions in ancient and subsurface systems. Predictions of sediment budgets in deep marine systems rely on integration of fundamental issues in turbulent particle suspension into geological models of turbidite systems.

Microbe-mediated transformations of marine dissolved organic matter during 2,100 years of natural incubation in the cold, oxic crust of the Mid-Atlantic Ridge.

NASA Astrophysics Data System (ADS)

Shah Walter, S. R.; Jaekel, U.; Huber, J. A.; Dittmar, T.; Girguis, P. R.

2015-12-01

On the western flank of the Mid-Atlantic Ridge, oxic seawater from the deep ocean is downwelled into the basaltic crust, supplying the crustal aquifer with an initial inoculum of organic matter and electron acceptors. Studies have shown that fluids circulating within the crust are minimally altered from original seawater, making this subsurface environment a unique natural experiment in which the fate of marine organic matter and the limitations of microbial adaptability in the context of reduced carbon supply can be examined. To make the subsurface crustal aquifer accessible, two CORK (Circulation Obviation Retrofit Kit) observatories have been installed at North Pond, a sediment-filled depression beneath the oligotrophic Sargasso Sea. Radiocarbon analysis of dissolved inorganic (DIC) and organic carbon (DOC) in samples recovered from these observatories show uncoupled aging between DOC and DIC with Δ14C values of DOC as low as -933‰ despite isolation from the open ocean for, at most, 2,100 years. This extreme value is part of a general trend of decreasing DOC δ13C and Δ14C values with increasing incubation time within the aquifer. Combined with reduced concentrations of DOC, our results argue for selective microbial oxidation of the youngest, most 13C-enriched components of downwelled DOC, possibly identifying these as characteristics of the more bioavailable fractions of deep-ocean dissolved organic matter. They also suggest that microbial oxidation during low-temperature hydrothermal circulation could be an important sink for aged marine dissolved organic matter.

Late Neogene marine incursions and the ancestral Gulf of California

USGS Publications Warehouse

McDougall, K.

2008-01-01

The late Neogene section in the Salton Trough, California, and along the lower Colorado River in Arizona is composed of marine units bracketed by nonmarine units. Microfossils from the marine deposits indicate that a marine incursion inundated the Salton Trough during the late Miocene. Water depths increased rapidly in the Miocene and eventually flooded the region now occupied by the Colorado River as far north as Parker, Arizona. Marine conditions were restricted in the Pliocene as the Colorado River filled the Salton Trough with sediments and the Gulf of California assumed its present configuration. Microfossils from the early part of this incursion include a diverse assemblage of benthic foraminifers (Amphistegina gibbosa, Uvigerina peregrina, Cassidulina delicata, and Bolivina interjuncta), planktic foraminifers (Globigerinoides obliquus, G. extremus, and Globigerina nepenthes), and calcareous nannoplankton (Discoaster brouweri, Discoaster aff. Discoaster surculus, Sphenolithus abies, and S. neoabies), whereas microfossils in the final phase contain a less diverse assemblage of benthic foraminifers that are diagnostic of marginal shallow-marine conditions (Ammonia, Elphidium, Bolivina, Cibicides, and Quinqueloculina). Evidence of an earlier middle Miocene marine incursion comes from reworked microfossils found near Split Mountain Gorge in the Fish Creek Gypsum (Sphenolithus moriformis) and near San Gorgonio Pass (Cyclicargolithus floridanus and Sphenolithus heteromorphus and planktic foraminifers). The middle Miocene incursion may also be represented by the older marine sedimentary rocks encountered in the subsurface near Yuma, Arizona, where rare middle Miocene planktic foraminifers are found. ?? 2008 The Geological Society of America.

Plasmid incidence in bacteria from deep subsurface sediments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fredrickson, J.K.; Hicks, R.J.; Li, S.W.

Bacteria were isolated from deep terrestrial subsurface sediments underlying the coastal plain of South Carolina. A total of 163 isolates from deep sediments, surface soil, and return drill muds were examined for plasmid DNA content and resistance to the antibiotics penicillin, ampicillin, carbenicillin, streptomycin, kanamycin, and tetracycline. MICs of Cu{sup 2+}, Cr{sup 3+}, and Hg{sup 2+} for each isolate were also determined. The overall frequency of plasmid occurrence in the subsurface bacteria was 33%. Resistance was most frequent to penicillin (70% of all isolates), ampicillin (49%), and carbenicillin (32%) and was concluded to be related to the concentrations of themore » individual antibiotics in the disks used for assaying resistance and to the production of low levels of {beta}-lactamase. The frequencies of resistance to penicillin and ampicillin were significantly greater for isolates bearing plasmids than for plasmidless isolates; however, resistance was not transferable to penicillin-sensitive Escherichia coli. Hybridization of subsurface bacterial plasmids and chromosomal DNA with a whole-TOL-plasmid (pWWO) probe revealed some homology of subsurface bacterial plasmid and chromosomal DNAs, indicating a potential for those bacterial to harbor catabolic genes on plasmids or chromosomes. The incidences of antibiotic resistance and MICs of metals for subsurface bacteria were significantly different from those drill mud bacteria, ruling out the possibility that bacteria from sediments were derived from drill muds.« less

Sorption kinetics of TNT and RDX in anaerobic freshwater and marine sediments: Batch studies.

PubMed

Ariyarathna, Thivanka; Vlahos, Penny; Tobias, Craig; Smith, Richard

2016-01-01

Examination of the partitioning of explosives onto sediment in marine environments is critical to predict the toxicological impacts of worldwide explosive-contaminated sites adjacent to estuaries, wetlands, and the coastal ocean. Marine sediments have been identified as sites of enhanced munitions removal, yet most studies addressing these interactions focus on soils and freshwater sediments. The present study measured the kinetics of 2,4,6-trinitrotoluene (TNT) and hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) sorption onto 2 marine sediments of varying grain sizes (silt vs sand) and organic carbon (OC) content. Abiotic sediment sorption tests were performed at 23 °C, 15 °C, and 4 °C by spiking TNT and RDX solutions directly into anaerobic sediment slurries. Marine sediments showed significantly higher compound uptake rates (0.30-0.80 h(-1) ) than freshwater silt (0.0046-0.0065 h(-1) ) for both compounds, probably because of lower compound solubilities and a higher pH in marine systems. Equilibrium partition constants are on the same order of magnitude for marine silt (1.1-2.0 L kg(-1) sediment) and freshwater silt (1.4-3.1 L kg(-1) sediment) but lower for marine sand (0.72-0.92 L kg(-1) sediment). Total organic carbon content in marine sediments varied linearly with equilibrium partition constants for TNT and was moderately linear for RDX. Uptake rates and equilibrium constants of explosives are inversely correlated to temperature regardless of sediment type because of kinetic barriers associated with low temperatures. © 2015 SETAC.

Concentrations of inorganic arsenic in groundwater, agricultural soils and subsurface sediments from the middle Gangetic plain of Bihar, India.

PubMed

Kumar, Manoj; Ramanathan, A L; Rahman, Mohammad Mahmudur; Naidu, Ravi

2016-12-15

Concentrations of inorganic forms [arsenite, As(III) and arsenate, As(V) of arsenic (As) present in groundwater, agricultural soils and subsurface sediments located in the middle Gangetic plain of Bihar, India were determined. Approximately 73% of the groundwater samples (n=19) show As(III) as the dominant species while 27% reveals As(V) was the dominant species. The concentration of As(III) in agricultural soil samples varies from not detectable to 40μg/kg and As(V) was observed as the major species (ranging from 1050 to 6835μg/kg) while the total As concentration varied from 3528 to 14,690μg/kg. Total extracted concentration of As was higher in the subsurface sediments (range 9119-20,056μg/kg in Methrapur and 4788-19,681μg/kg in Harail Chapar) than the agricultural soil, indicating the subsurface sediment as a source of As. Results of X-ray diffraction (XRD) and environmental scanning electron microscope (ESEM) revealed the presence of hematite and goethite throughout the vertical section below while magnetite was observed only in the upper oxidized layer at Methrapur and Harail Chapar. Alteration of Fe-oxides and presence of fibrous goethite indicating presence of diagenetic sediment. Siderite plays a crucial role as sinks to the As in subsurface sediments. The study also concluded that decomposition of organic matter present in dark and grey sections promote the redox conditions and trigger mobilization of As into groundwater. Copyright © 2016 Elsevier B.V. All rights reserved.

Geometry and Dynamics of the Mesopotamian Foreland Basin

NASA Astrophysics Data System (ADS)

Pirouz, M.; Avouac, J. P.; Gualandi, A.; Hassanzadeh, J.; Sternai, P.

2016-12-01

We have constrained the geometry of the Zagros foreland basin along the entire northern edge of the Arabian plate using subsurface data from Iran, Iraq and Syria. We use the Oligo-Miocene marine Asmari Formation and its equivalents in the region to reconstruct high resolution foreland basin geometry. This extensive carbonate platform limestone unit separates pre-collisional passive margin marine sediments from the Cenozoic foreland deposits dominated by continental sources; and therefore it can be used as a measure of post-collisional deflection. The 3D reconstructed Asmari Formation shows along-strike thickness variations of the foreland basin deposits from 1 to 6 km. The deepest part of the foreland basin coincides with the Dezful embayment in Iran, and its depth decreases on both sides. In principle the basin geometry should reflect the loading resulted from overthrusting in the Zagros fold-thrust belt, the sediment fill and dynamic stresses due to lithospheric and upper mantle deformation. To estimate these various sources of loads we analyze the basin geometry in combination with gravity, free air anomaly, and Moho depths determined from seismological observations. Our analysis suggests in particular that redistribution of surface load by surface processes is a primary controlling factor of the basin geometry. The wavelength of a foreland basin may bear little information on the elastic flexural rigidity of the lithosphere.

Subsurface warming in the subpolar North Atlantic during rapid climate events in the Early and Mid-Pleistocene

NASA Astrophysics Data System (ADS)

Hernández-Almeida, Iván; Sierro, Francisco; Cacho, Isabel; Abel Flores, José

2014-05-01

A new high-resolution reconstruction of the temperature and salinity of the subsurface waters using paired Mg/Ca-δ18O measurements on the planktonic foraminifera Neogloboquadrina pachyderma sinistrorsa (sin.) was conducted on a deep-sea sediment core in the subpolar North Atlantic (Site U1314). This study aims to reconstruct millennial-scale subsurface hydrography variations during the Early and Mid-Pleistocene (MIS 31-19). These rapid climate events are characterized by abrupt shifts between warm/cold conditions, and ice-sheet oscillations, as evidenced by major ice rafting events recorded in the North Atlantic sediments (Hernández-Almeida et al., 2012), similar to those found during the Last Glacial period (Marcott et al, 2011). The Mg/Ca derived paleotemperature and salinity oscillations prior and during IRD discharges at Site U1314 are related to changes in intermediate circulation. The increases in Mg/Ca paleotemperatures and salinities during the IRD event are preceded by short episodes of cooling and freshening of subsurface waters. The response of the AMOC to this perturbation is an increased of warm and salty water coming from the south, transported to high latitudes in the North Atlantic beneath the thermocline. This process is accompanied by a southward shift in the convection cell from the Nordic Seas to the subpolar North Atlantic and better ventilation of the North Atlantic at mid-depths. Poleward transport of warm and salty subsurface subtropical waters causes intense basal melting and thinning of marine ice-shelves, that culminates in large-scale instability of the ice sheets, retreat of the grounding line and iceberg discharge. The mechanism proposed involves the coupling of the AMOC with ice-sheet dynamics, and would explain the presence of these fluctuations before the establishment of high-amplitude 100-kyr glacial cycles. Hernández-Almeida, I., Sierro, F.J., Cacho, I., Flores, J.A., 2012. Impact of suborbital climate changes in the North Atlantic on ice sheet dynamics at the Mid-Pleistocene Transition. Paleoceanography 27, PA3214. Marcott, S.A., Clark, P.U., Padman, L., Klinkhammer, G.P., Springer, S.R., Liu, Z., Otto-Bliesner, B.L., Carlson, A.E., Ungerer, A., Padman, J., He, F., Cheng, J., Schmittner, A., 2011. Ice-shelf collapse from subsurface warming as a trigger for Heinrich events. Proceedings of the National Academy of Sciences 108, 13415-13419

Sulfur diagenesis in marine sediments

NASA Technical Reports Server (NTRS)

Goldhaber, M.

1985-01-01

Bacterial sulfate reduction occurs in all marine sediments that contain organic matter. Aqueous sulfide (HS-, H2S), one of the initial products of bacterial sulfide reduction, is extremely reactive with iron bearing minerals: sulfur is fixed into sediments as iron sulfide (first FeS and then Fe2S2). A working definition is given of sulfur diagenesis in marine sediments. Controls and consequences of sulfate reduction rates in marine sediments are examined.

Particulate Trace Element Cycling in a Diatom Bloom at Station ALOHA

NASA Astrophysics Data System (ADS)

Weisend, R.; Morton, P. L.; Landing, W. M.; Fitzsimmons, J. N.; Hayes, C. T.; Boyle, E. A.

2014-12-01

Phytoplankton in oligotrophic marine deserts depend on remote sources to supply trace nutrients. To examine these sources, marine particulate matter samples from the central North Pacific (Station ALOHA) were collected during the July-August 2012 HOE-DYLAN cruises and analyzed for a suite of trace (e.g., Fe, Mn) and major (e.g. Al, P) elements. Daily surface SPM samples were examined for evidence of atmospheric deposition and biological uptake, while five vertical profiles were examined for evidence of surface vertical export and subsurface horizontal transport from nearby sources (e.g., margin sediments, hydrothermal plumes). Maxima in surface particulate P (a biological tracer) corresponded with a diatom bloom, and surprisingly also coincided with maxima in particulate Al (typically a tracer for lithogenic inputs). The surface particulate Al distributions likely result from the adsorption of dissolved Al onto diatom silica frustules, not from atmospheric dust deposition. In addition, a subsurface maximum in particulate Al and P was observed four days later at 75m, possibly resulting from vertical export of the surface diatom bloom. The distributions of other bioactive trace elements (e.g. Cd, Co, Cu) will be presented in the context of the diatom bloom and other biological, chemical and physical features. A second, complementary poster is also being presented which examines the cycling of trace elements in lithogenic particles (Morton et al., "Trace Element Cycling in Lithogenic Particles at Station ALOHA").

Cretaceous biostratigraphy in the Wyoming thrust belt

DOE Office of Scientific and Technical Information (OSTI.GOV)

Nichols, D.J.; Jacobson, S.R.

Biostratigraphy is essential to exploration for oil and gas in the Wyoming thrust belt because fossils provide a temporal framework for interpretation of events of faulting, erosion, sedimentation, and the development of hydrocarbon traps and migration pathways. In the Cretaceous section, fossils are especially useful for dating and correlating repetitive facies of different ages in structurally complex terrain. The biostratigraphic zonation for the region is based on megafossils (chiefly ammonites), which permit accurate dating and correlation of outcrop sections, and which have been calibrated with the radiometric time scale for the Western Interior. Molluscan and vertebrate zone fossils are difficultmore » to obtain from the subsurface, however, and ammonities are restricted to rocks of margin origin. Palynomorphs (plant microfossils) have proven to be the most valuable fossils in investigations of stratigraphy and structures in the subsurface of the thrust belt because palynomorphs can be recovered from drill cuttings. Palynomorphs also are found in both marine and nonmarine rocks and can be used for correlation between facies. In this paper, stratigraphic ranges of selected Cretaceous marine and nonmarine palynomorphs in previously designated reference sections in Fossil Basin, Wyoming, are correlated with the occurrence of ammonities and other zone fossils in the same sections. These correlations can be related to known isotopic ages, and they contribute to the calibration of palynomorph ranges in the Cretaceous of the Western Interior.« less

Evidence for marine origin and microbial-viral habitability of sub-zero hypersaline aqueous inclusions within permafrost near Barrow, Alaska.

PubMed

Colangelo-Lillis, J; Eicken, H; Carpenter, S D; Deming, J W

2016-05-01

Cryopegs are sub-surface hypersaline brines at sub-zero temperatures within permafrost; their global extent and distribution are unknown. The permafrost barrier to surface and groundwater advection maintains these brines as semi-isolated systems over geological time. A cryopeg 7 m below ground near Barrow, Alaska, was sampled for geochemical and microbiological analysis. Sub-surface brines (in situtemperature of -6 °C, salinity of 115 ppt), and an associated sediment-infused ice wedge (melt salinity of 0.04 ppt) were sampled using sterile technique. Major ionic concentrations in the brine corresponded more closely to other (Siberian) cryopegs than to Standard seawater or the ice wedge. Ionic ratios and stable isotope analysis of water conformed to a marine or brackish origin with subsequent Rayleigh fractionation. The brine contained ∼1000× more bacteria than surrounding ice, relatively high viral numbers suggestive of infection and reproduction, and an unusually high ratio of particulate to dissolved extracellular polysaccharide substances. A viral metagenome indicated a high frequency of temperate viruses and limited viral diversity compared to surface environments, with closest similarity to low water activity environments. Interpretations of the results underscore the isolation of these underexplored microbial ecosystems from past and present oceans. © FEMS 2016. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

In-Well Sediment Incubators to Evaluate Microbial Community Stability and Dynamics following Bioimmobilization of Uranium

DOE Office of Scientific and Technical Information (OSTI.GOV)

Baldwin, Brett R.; Peacock, Aaron D.; Gan, M.

2009-09-23

An in-situ incubation device (ISI) was developed in order to investigate the stability and dynamics of sediment associated microbial communities to prevailing subsurface oxidizing or reducing conditions. Here we describe the use of these devices at the Old Rifle Uranium Mill Tailings Remedial Action (UMTRA) site. During the 7 month deployment oxidized Rifle aquifer background sediments (RABS) were deployed in previously biostimulated wells under iron reducing conditions, cell densities of known iron reducing bacteria including Geobacteraceae increased significantly showing the microbial community response to local subsurface conditions. PLFA profiles of RABS following in situ deployment were strikingly similar to thosemore » of adjacent sediment cores suggesting ISI results could be extrapolated to the native material of the test plots. Results for ISI deployed reduced sediments showed only slight changes in community composition and pointed toward the ability of the ISIs to monitor microbial community stability and response to subsurface conditions.« less

77 FR 14717 - National Oil and Hazardous Substances Pollution Contingency Plan; National Priorities List...

Federal Register 2010, 2011, 2012, 2013, 2014

2012-03-13

... preclude future actions under Superfund. This partial deletion pertains to the surface soil, unsaturated subsurface soil, surface water and sediments of Operable Unit (OU) 1, the Gateway Lake Ash Study Area, and.... Surface soil, unsaturated subsurface soil, surface water, and sediments at OU-2, OU-3, OU-4, OU-5, OU-6...

Effect of replacing surface inlets with blind or gravel inlets on sediment and phosphorus subsurface drainage losses

USDA-ARS?s Scientific Manuscript database

Open surface inlets that connect to subsurface tile drainage systems provide a direct pathway for sediment, nutrients, and agrochemicals to surface waters. This study was conducted to determine whether modifying open inlets by burying them in gravel capped with 30 cm of sandy clay loam soil or in ve...

Sedimentibacter acidaminivorans sp. nov., an anaerobic, amino-acid-utilizing bacterium isolated from marine subsurface sediment.

PubMed

Imachi, Hiroyuki; Sakai, Sanae; Kubota, Takaaki; Miyazaki, Masayuki; Saito, Yayoi; Takai, Ken

2016-03-01

A novel, anaerobic bacterium, strain MO-SEDI T , was isolated from a methanogenic microbial community, which was originally obtained from marine subsurface sediments collected from off the Shimokita Peninsula of Japan. Cells were Gram-stain-negative, non-motile, non-spore-forming rods, 0.4-1.4 μm long by 0.4-0.6 μm wide. The cells also formed long filaments of up to about 11 μm. The strain grew on amino acids (i.e. valine, leucine, isoleucine, methionine, glycine, phenylalanine, tryptophan, lysine and arginine), pyruvate and melezitose in the presence of yeast extract. Growth was observed at 4-37 °C (optimally at 30 °C), at pH 6.0 and 8.5 (optimally at 7.0-7.5) and in 0-60 g l - 1 NaCl (optimally 20 g NaCl l - 1 ). The G+C content of the DNA was 32.0 mol%. The polar lipids of strain MO-SEDI T were phosphatidylglycerol, phosphatidyl lipids and unknown lipids. The major cellular fatty acids (>10 % of the total) were C 14 : 0 , C 16 : 1 ω9 and C 16 : 0 dimethyl aldehyde. Comparative sequence analysis of the 16S rRNA gene showed that strain MO-SEDI T was affiliated with the genus Sedimentibacter within the phylum Firmicutes . It was related most closely to the type strain of Sedimentibacter saalensis (94 % sequence similarity). Based on the phenotypic and genetic characteristics, strain MO-SEDI T is considered to represent a novel species of the genus Sedimentibacter , for which the name Sedimentibacter acidaminivorans sp. nov. is proposed. The type strain is MO-SEDI T ( = JCM 17293 T  = DSM 24004 T ).

Microbial Life of North Pacific Oceanic Crust

NASA Astrophysics Data System (ADS)

Schumann, G.; Koos, R.; Manz, W.; Reitner, J.

2003-12-01

Information on the microbiology of the deep subsurface is necessary in order to understand the factors controlling the rate and extent of the microbially catalyzed reactions that influence the geophysical properties of these environments. Drilling into 45-Ma oceanic basaltic crust in a deepwater environment during ODP Leg 200 provided a promising opportunity to explore the abundance, diversity and activity of micro-organisms. The combined use of culture-independent molecular phylogenetic analyses and enrichment culture techniques is an advantageous approach in investigating subsurface microbial ecosystems. Enrichment culture methods allow the evaluation of potential activities and functions. Microbiological investigations revealed few aerobic cultivable, in part hitherto unknown, micro-organisms in deep submarine sediments and basaltic lava flows. 16S rDNA sequencing of isolates from sediment revealed the next relatives to be members of the genera Halomonas, Pseudomonas, and Lactobacillus. Within the Pseudomonadaceae the closest relative is Acinetobacter sp., which was isolated from a deep subsurface environment. The next phylogenetical relatives within the Halomonadaceae are bacteria typically isolated from Soda lakes, which are considered as model of early life conditions. Interestingly, not only sediment bacteria could be obtained in pure culture. Aerobic strains could also be successfully isolated from the massive tholeiitic basalt layer at a depth of 76.16 mbsf (46 m below the sediment/basement contact). These particular isolates are gram-positive with low G+C content of DNA, phylogenetically affiliated to the phylum Firmicutes. The closest neighbors are e.g. a marine Bacillus isolated from the Gulf of Mexico and a low G+C gram-positive bacterium, which belongs to the microbial flora in the deepest sea mud of the Mariana Trench, isolated from a depth of 10,897 m. Based on the similarity values, the isolates represent hitherto undescribed species of the deep biosphere. Molecular microbial diversity is currently determined by cloning und comparative 16S rRNA gene analyses. The first results will also be presented. In summary, the low number of isolates, cultivated under aerobic conditions, is in good agreement with the common opinion that most of the bacteria within the deep biosphere are anaerobic. Thus, studies of microbial community structure in solid geological materials are feasible and constitute further evidence that continuing microbiological activity in the challenging exploration of the deep sub-seafloor biosphere environment is absolutely promising.

Temperature and pressure adaptation of a sulfate reducer from the deep subsurface

PubMed Central

Fichtel, Katja; Logemann, Jörn; Fichtel, Jörg; Rullkötter, Jürgen; Cypionka, Heribert; Engelen, Bert

2015-01-01

Microbial life in deep marine subsurface faces increasing temperatures and hydrostatic pressure with depth. In this study, we have examined growth characteristics and temperature-related adaptation of the Desulfovibrio indonesiensis strain P23 to the in situ pressure of 30 MPa. The strain originates from the deep subsurface of the eastern flank of the Juan de Fuca Ridge (IODP Site U1301). The organism was isolated at 20°C and atmospheric pressure from ~61°C-warm sediments approximately 5 m above the sediment–basement interface. In comparison to standard laboratory conditions (20°C and 0.1 MPa), faster growth was recorded when incubated at in situ pressure and high temperature (45°C), while cell filamentation was induced by further compression. The maximum growth temperature shifted from 48°C at atmospheric pressure to 50°C under high-pressure conditions. Complementary cellular lipid analyses revealed a two-step response of membrane viscosity to increasing temperature with an exchange of unsaturated by saturated fatty acids and subsequent change from branched to unbranched alkyl moieties. While temperature had a stronger effect on the degree of fatty acid saturation and restructuring of main phospholipids, pressure mainly affected branching and length of side chains. The simultaneous decrease of temperature and pressure to ambient laboratory conditions allowed the cultivation of our moderately thermophilic strain. This may in turn be one key to a successful isolation of microorganisms from the deep subsurface adapted to high temperature and pressure. PMID:26500624

Exploring Microbial Life in Oxic Sediments Underlying Oligotrophic Ocean Gyres

NASA Astrophysics Data System (ADS)

Ziebis, W.; Orcutt, B.; Wankel, S. D.; D'Hondt, S.; Szubin, R.; Kim, J. N.; Zengler, K.

2015-12-01

Oxygen, carbon and nutrient availability are defining parameters for microbial life. In contrast to organic-rich sediments of the continental margins, where high respiration rates lead to a depletion of O2 within a thin layer at the sediment surface, it was discovered that O2 penetrates several tens of meters into organic-poor sediments underlying oligotrophic ocean gyres. In addition, nitrate, another important oxidant, which usually disappears rapidly with depth in anoxic sediments, tends to accumulate above seawater concentrations in the oxic subsurface, reflecting the importance of nitrogen cycling processes, including both nitrification and denitrification. Two IODP drilling expeditions were vital for exploring the nature of the deep subsurface beneath oligotrophic ocean gyres, expedition 329 to the South Pacific Gyre (SPG) and expedition 336 to North Pond, located on the western flank of the Mid-Atlantic ridge beneath the North Atlantic Gyre. Within the ultra-oligotrophic SPG O2 penetrates the entire sediment column from the sediment-water interface to the underlying basement to depths of > 75 m. At North Pond, a topographic depression filled with sediment and surrounded by steep basaltic outcrops, O2 penetrates deeply into the sediment (~ 30 m) until it eventually becomes depleted. O2 also diffuses upward into the sediment from seawater circulating within the young crust underlying the sediment, resulting in a deep oxic layer several meters above the basalt. Despite low organic carbon contents microbial cells persist throughout the entire sediment column within the SPG (> 75 m) and at North Pond, albeit at low abundances. We explored the nature of the subsurface microbial communities by extracting intact cells from large volumes of sediment obtained from drill cores of the two expeditions. By using CARD-FiSH, amplicon (16s rRNA) and metagenome sequencing we shed light on the phylogenetic and functional diversity of the elusive communities residing in the deep oxic sediments of these two different areas. Given the global extent of this oxic subsurface studies of the diversity and metabolic potential of its biome, together with the analyses of porewater geochemical and isotopic composition, are beginning to reveal its role in global biogeochemical cycles.

Redox effects on the microbial degradation of refractory organic matter in marine sediments

NASA Astrophysics Data System (ADS)

Reimers, Clare E.; Alleau, Yvan; Bauer, James E.; Delaney, Jennifer; Girguis, Peter R.; Schrader, Paul S.; Stecher, Hilmar A.

2013-11-01

Microbially mediated reduction-oxidation (redox) reactions are often invoked as being the mechanisms by which redox state influences the degradation of sedimentary organic matter (OM) in the marine environment. To evaluate the effects of elevated, oscillating and reduced redox potentials on the fate of primarily aged, mineral-adsorbed OM contained in continental shelf sediments, we used microbial fuel cells to control redox state within and around marine sediments, without amending the sediments with reducing or oxidizing substances. We subsequently followed electron fluxes in the redox elevated and redox oscillating treatments, and related sediment chemical, isotopic and bacterial community changes to redox conditions over a 748-day experimental period. The electron fluxes of the elevated and oscillating redox cells were consistent with models of organic carbon (OC) oxidation with time-dependent first-order rate constants declining from 0.023 to 0.005 y-1, in agreement with rate constants derived from typical OC profiles and down core ages of offshore sediments, or from sulfate reduction rate measurements in similar sediments. Moreover, although cumulative electron fluxes were higher in the continuously elevated redox treatment, incremental rates of electron harvesting in the two treatments converged over the 2 year experiment. These similar rates were reflected in chemical indicators of OM metabolism such as dissolved OC and ammonia, and particulate OC concentrations, which were not significantly different among all treatments and controls over the experimental time-scale. In contrast, products of carbonate and opal dissolution and metal mobilization showed greater enrichments in sediments with elevated and oscillating redox states. Microbial community composition in anode biofilms and surrounding sediments was assessed via high-throughput 16S rRNA gene sequencing, and these analyses revealed that the elevated and oscillatory redox treatments led to the enrichment of Deltaproteobacteria on the sediment-hosted anodes over time. Many Deltaproteobacteria are capable of using electrodes as terminal electron acceptors to completely oxidize organic substrates. Notably, Deltaproteobacteria were not measurably enriched in the sediments adjacent to anodes, suggesting that - in these experiments - electron-shuttling bacterial networks did not radiate out away from the electrodes, affecting millimeters or centimeters of sediment. Rather, microbial phylotypes allied to the Clostridia appeared to dominate in the sediment amongst all treatments, and likely played essential roles in converting complex dissolved and particulate sources of OM to simple fermentation products. Thus, we advance that the rate at which fermentation products are generated and migrate to oxidation fronts is what limits the remineralization of OM in many subsurface sediments removed from molecular oxygen. This is a diagenetic scenario that is consistent with the discharging behavior of redox oscillating sediment MFCs. It is also compatible with hypotheses that molecular O2 - and not just the resulting elevated redox potential - may be required to effectively catalyze the degradation of refractory OM. Such decomposition reactions have been suggested to depend on substrate interactions with highly reactive oxygen-containing radicals and/or with specialized extracellular enzymes produced by aerobic prokaryotic or eukaryotic cells.

Preserved Organic Matter in the Alpine Tethyan Ocean Continental Transition (Totalp unit, Eastern Swiss Alps)

NASA Astrophysics Data System (ADS)

Mateeva, T.; Wolff, G. A.; Kusznir, N.; Wheeler, J.; Manatschal, G.

2015-12-01

Observations at hydrothermal systems in modern ocean settings suggest that methane produced by serpentinization can support methanotrophic bio-systems. An important question is whether such bio-systems are localised or are more pervasive in their association with serpentinized mantle in the subsurface. This has implications for the global importance of the hidden sub-surface bio-systems, the fate of methane and the carbon cycle. The Totalp unit, a remnant of a former Ocean Continent Transition (OCT) exposed in Alps of Eastern Switzerland, has been chosen to investigate the presence or absence of methanotrophic biosystems within serpentinized exhumed mantle in the Alpine Tethyan margin. The Totalp unit is made of serpentinized mantle and ophicalcites overlain by Upper Jurassic to Lower Cretaceous post-rift sediments. The Totalp unit has undergone little Alpine deformation and only a low-grade metamorphic overprint (<200°C). Totalp samples are characterized by total carbon contents of 0.02% to 12.90% and organic carbon contents of 1x10-4 % to 8%. This large range of values reflects the large lithological diversity of this area. The serpentinized peridotite, ophicalcite and post-rift sediments contain hydrocarbons in the form of n-alkanes in the range C20 - C40; isoprenoids, for example pristane and phytane are present in sediments. The organic biological marker distribution is consistent with the temperature history of the OCT (i.e.lower maximum temperature than 200°C). First results from Totalp show evidence for preservation of marine organic matter in the serpentinized mantle and overlying sediments, although there is no evidence that any organic matter is generated from methanotrophic bio-systems. Nevertheless, focussing on Tethyan hydrothermal systems and preserved hydrocarbons will be critical in understanding whether methanotrophic biomarkers can be preserved and if so whether the methane originated from serpentenization.

Bahía de Banderas, Mexico: Morphology, Magnetic Anomalies and Shallow Structure

NASA Astrophysics Data System (ADS)

Mortera Gutiérrez, Carlos A.; Bandy, William L.; Ponce Núñez, Francisco; Pérez Calderón, Daniel A.

2016-10-01

The Bahía de Banderas lies within a tectonically complex area at the northern end of the Middle America Trench. The structure, morphology, subsurface geology and tectonic history of the bay are essential for unraveling the complex tectonic processes occurring in this area. With this focus, marine geophysical data (multi-beam bathymetry, high resolution seismic reflection and total field magnetic data) were collected within the bay and adjacent areas during four campaigns aboard the B.O. EL PUMA conducted in 2006 and 2009. These data image the detailed morphology of, and sedimentation patterns within, the Banderas Canyon (a prominent submarine canyon situated on the south side of the bay) as well as the shallow subsurface structure of the northern part of the bay and the submarine Marietas Ridge, which bounds the bay to the west. We find that the Marietas Ridge is presently a transtensional feature; the course of the Banderas Canyon is controlled by extensive turbidite fan sedimentation in its eastern extremity and by structural lineaments to the west; the canyon floor is filled by sediments and exhibits almost no evidence for recent tectonic movements; the southern canyon wall is quite steep and a few sediments are deposited as submarine fans at the base of the southern wall; and extensive turbidite fans form the lower part of the northern canyon wall, producing a gently sloping lower northern wall. We find no evidence for a regional east-west striking lineament between the bay and the Middle America Trench, which casts doubts on the previous assertion that the Banderas Canyon is unequivocally related to the presence of a regional half-graben. Finally, a N71°E oriented normal fault offsets the seafloor reflector by 15 m within the central part of the bay, suggesting that the bay is currently being subjected to NNW-SSE extension.

Messinian Salinity Crisis and basin fluid flow

NASA Astrophysics Data System (ADS)

Bertoni, Claudia; Cartwight, Joe

2014-05-01

Syn- and post-depositional movement of fluids through sediments is one of the least understood aspects in the evolution of a basin. The conventional hydrostratigraphic view on marine sedimentary basins assumes that compactional and meteoric groundwater fluid circulation drives fluid movement and defines its timing. However, in the past few years, several examples of instantaneous and catastrophic release of fluids have been observed even through low-permeability sediments. A particularly complex case-study involves the presence of giant salt bodies in the depocentres of marine basins. Evaporites dramatically change the hydrostratigraphy and fluid-dynamics of the basin, and influence the P/T regimes, e.g. through changes in the geothermal gradient and in the compaction of underlying sediments. Our paper reviews the impact of the Messinian Salinity Crisis (MSC) and evaporites on fluid flow in the Mediterranean sub-basins. The analysis of geological and geophysical sub-surface data provides examples from this basin, and the comparison with analogues in other well-known evaporitic provinces. During the MSC, massive sea-level changes occurred in a relatively limited time interval, and affected the balance of fluid dynamics, e.g. with sudden release or unusual trapping of fluids. Fluid expulsion events are here analysed and classified in relation to the long and short-term effects of the MSC. Our main aim is to build a framework for the correct identification of the fluid flow-related events, and their genetic mechanisms. On basin margins, where evaporites are thin or absent, the sea-level changes associated with the MSC force a rapid basinward shift of the mixing zone of meteoric/gravity flow and saline/compactional flow, 100s-km away from its pre-MSC position. This phenomenon changes the geometry of converging flows, creates hydraulic traps for fluids, and triggers specific diagenetic reactions in pre-MSC deep marine sediments. In basin-centre settings, unloading and re-loading of water associated to the sea-level changes leads to the sudden release of focused fluids, enhancing pockmark formation, evaporite dissolution, gas-hydrate dissociation and methane venting. After the MSC, and in the long-term basin evolution, the aquitard effect of the thick evaporites also created favourable condition for the development of overpressures in the pre-MSC sediments. However, the traditional view of saline giants as impermeable barriers to fluid flow has been challenged in recent years, by the documented evidence of fluid migration pathways through thick evaporites. Ultimately, these events can lead not only to fluid, but also to sediment remobilisation. The review here presented has applications as a tool for identifying, quantifying and understanding controls and timing of fluid dynamics in marine basins hosting extensive evaporitic series.

Lower and lower Middle Pennsylvanian fluvial to estuarine deposition, central Appalachian basin: Effects of eustasy, tectonics, and climate

USGS Publications Warehouse

Greb, S.F.; Chesnut, D.R.

1996-01-01

Interpretations of Pennsylvanian sedimentation and peat accumulation commonly use examples from the Appalachian basin because of the excellent outcrops and large reserve of coal (>100 billion metric tons) in the region. Particularly controversial is the origin of Lower and lower Middle Pennsylvanian quartzose sandstones; beach-barrier, marine-bar, tidalstrait, and fluvial models all have been applied to a series of sand bodies along the western outcrop margin of the basin. Inter-pretations of these sandstones and their inferred lateral relationships are critical for understanding the relative degree of eustatic, tectonic, and climatic controls on Early Pennsylvanian sedimentation. Cross sections utilizing >1000 subsurface records and detailed sedimentological analysis of the Livingston Conglomerate, Rockcastle Sandstone, Corbin Sandstone, and Pine Creek sandstone (an informal member) of the Breathitt Group were used to show that each of the principal quartzose sandstones on the margin of the central Appalachian basin contains both fluvial and marginal marine facies. The four sandstones are fluvially dominated and are inferred to represent successive bed-load trunk systems of the Appalachian foreland. Base-level rise and an associated decrease in extra-basinal sediment at the end of each fluvial episode led to the development of local estuaries and marine reworking of the tops of the sand belts. Each of the sand belts is capped locally by a coal, regardless of whether the upper surfaces of the sand belts are of fluvial or estuarine origin, suggesting allocyclic controls on deposition. Peats were controlled by a tropical ever-wet climate, which also influenced sandstone composition through weathering of stored sands in slowly aggrading braidplains. Recurrent stacking of thick, coarse-grained, fluvial deposits with extra-basinal quartz pebbles; dominance of bed-load fluvial-lowstand deposits over mixed-load, estuarine-transgressive deposits; thinning of sand belts around tectonic highs and along faults; cratonward shift and amalgamation of successive sand belts on the margin of the basin; and truncation of successive sand belts toward the fault-bound margin of the basin are interpreted as regional responses to Alleghenian tectonism, inferred to have been the dominant control on accommodation space and sediment flux in the Early Pennsylvanian basin.

Extremely halophilic archaea from ancient salt sediments and their possible survival in halite fluid inclusions

NASA Astrophysics Data System (ADS)

Stan-Lotter, H.; Fendrihan, S.; Gerbl, F. W.; Dornmayr-Pfaffenhuemer, M.; Frethem, C.

2008-09-01

Halophilic archaebacteria (haloarchaea) thrive in environments with salt concentrations approaching saturation, such as natural brines, marine solar salterns and alkaline salt lakes; they have also been isolated from ancient subsurface salt sediments of great geological age (195-280 million years) and some of those strains were described as novel species (1). The cells survived perhaps while being enclosed within small fluid inclusions in the halite. The characterization of subsurface microbial life is of astrobiological relevance since extraterrestrial halite has been detected and since microbial life on Mars, if existent, may have retreated into the subsurface. We attempted to simulate the embedding process of extremely halophilic archaea and to analyse any cellular changes which might occur. When enclosing haloarchaea in laboratory grown halite, cells accumulated preferentially in fluid inclusions, as could be demonstrated by pre-staining with fluorescent dyes. With increased time of embedding, rod-shaped cells of Halobacterium salinarum strains were found to assume roundish morphologies. Upon dissolution of the salt crystals, these spheres were stable and viable for months when kept in buffers containing 4 M NaCl. Scanning electron microscopy (SEM) following fixation with glutaraldehyde suggested a potentially gradual transformation from rods to spheres. This notion was supported by fluorescence microscopy of Halobacterium cells, following embedding in halite and staining with SYTO 9. One-dimensional protein patterns of rods and spheres, following SDS polyacrylamide gel electrophoresis, were similar except that the S-layer protein appeared reduced by about 15 - 20 % in spheres. The reddish-orange pigmentation of spheres was much lighter compared to that of rod-shaped cells, suggesting lowered concentrations of carotenoids; this was confirmed by extraction and spectrometry of pigments. The data suggested that Halobacterium cells are capable of forming specific cellular structures upon embedding in fluid inclusions of halite. It is tempting to speculate that such structures may be responsible for long term survival in ancient geological materials such as salt sediments, including extraterrestrial salt. (1) Fendrihan S., Legat A., Pfaffenhuemer M., Gruber C., Weidler W., Gerbl F.W., Stan-Lotter H. (2006) Extremely halophilic archaea and the issue of long-term microbial survival. Reviews in Environmental Science and Bio/technology 5, 1569-1605.

Viral Tracer Studies Indicate Contamination of Marine Waters by Sewage Disposal Practices in Key Largo, Florida

PubMed Central

Paul, J. H.; Rose, J. B.; Brown, J.; Shinn, E. A.; Miller, S.; Farrah, S. R.

1995-01-01

Domestic wastewater disposal practices in the Florida Keys are primarily limited to on-site disposal systems such as septic tanks, injection wells, and illegal cesspits. Poorly treated sewage is thus released into the highly porous subsurface Key Largo limestone matrix. To investigate the fate and transport of sewage in the subsurface environment and the potential for contamination of marine surface waters, we employed bacteriophages as tracers in a domestic septic system and a simulated injection well in Key Largo, Florida. Transport of bacteriophage (Phi)HSIC-1 from the septic tank to adjacent surface canal waters and outstanding marine waters occurred in as little as 11 and 23 h, respectively. Transport of the Salmonella phage PRD1 from the simulated injection well to a canal adjacent to the injection site occurred in 11.2 h. Estimated rates of migration of viral tracers ranged from 0.57 to 24.2 m/h, over 500-fold greater than flow rates measured previously by subsurface flow meters in similar environments. These results suggest that current on-site disposal practices can lead to contamination of the subsurface and surface marine waters in the Keys. PMID:16535046

Viral tracer studies indicate contamination of marine waters by sewage disposal practices in key largo, Florida.

PubMed

Paul, J H; Rose, J B; Brown, J; Shinn, E A; Miller, S; Farrah, S R

1995-06-01

Domestic wastewater disposal practices in the Florida Keys are primarily limited to on-site disposal systems such as septic tanks, injection wells, and illegal cesspits. Poorly treated sewage is thus released into the highly porous subsurface Key Largo limestone matrix. To investigate the fate and transport of sewage in the subsurface environment and the potential for contamination of marine surface waters, we employed bacteriophages as tracers in a domestic septic system and a simulated injection well in Key Largo, Florida. Transport of bacteriophage (Phi)HSIC-1 from the septic tank to adjacent surface canal waters and outstanding marine waters occurred in as little as 11 and 23 h, respectively. Transport of the Salmonella phage PRD1 from the simulated injection well to a canal adjacent to the injection site occurred in 11.2 h. Estimated rates of migration of viral tracers ranged from 0.57 to 24.2 m/h, over 500-fold greater than flow rates measured previously by subsurface flow meters in similar environments. These results suggest that current on-site disposal practices can lead to contamination of the subsurface and surface marine waters in the Keys.

20th-century glacial-marine sedimentation in Vitus Lake, Bering Glacier, Alaska, U.S.A.

USGS Publications Warehouse

Molnia, B.F.; Post, A.; Carlson, P.R.

1996-01-01

Vitus Lake, the ice-marginal basin at the southeastern edge of Bering Glacier, Alaska, U.S.A., is a site of modern, rapid, glacial-marine sedimentation. Rather than being a fresh-water lake, Vitus Lake is a tidally influenced, marine to brackish embayment connected to the Pacific Ocean by an inlet, the Seal River. Vitus Lake consists of five deep bedrock basins, separated by interbasinal highs. Glacial erosion has cut these basins as much as 250 m below sea level. High-resolution seismic reflection surveys conducted in 1991 and 1993 of four of Vitus Lake's basins reveal a complex, variable three-component acoustic stratigraphy. Although not fully sampled, the stratigraphy is inferred to be primarily glacial-marine units of (1) basal contorted and deformed glacial-marine and glacial sediments deposited by basal ice-contact processes and submarine mass-wasting; (2) acoustically well-stratified glacial-marine sediment, which unconformably overlies the basal unit and which grades upward into (3) acoustically transparent or nearly transparent glacial-marine sediment. Maximum thicknesses of conformable glacial-marine sediment exceed 100 m. All of the acoustically transparent and stratified deposits in Vitus Lake are modern in age, having accumulated between 1967 and 1993. The basins where these three-part sequences of "present-day" glacial-marine sediment are accumulating are themselves cut into older sequences of stratified glacial and glacial-marine deposits. These older units outcrop on the islands in Vitus Lake. In 1967, as the result of a major surge, glacier ice completely filled all five basins. Subsequent terminus retreat, which continued through August 1993, exposed these basins, providing new locations for glacial-marine sediment accumulation. A correlation of sediment thicknesses measured from seismic profiles at specific locations within the basins, with the year that each location became ice-free, shows that the sediment accumulation at some locations exceeds 10 m year-1.

Sulfonates: A novel class of organic sulfur compounds in marine sediments

NASA Astrophysics Data System (ADS)

Vairavamurthy, Appathurai; Zhou, Weiqing; Eglinton, Timothy; Manowitz, Bernard

1994-11-01

X-ray absorption near-edge structure spectroscopy (XANES) used to measure sulfur speciation in a variety of organic-rich marine sediments has established sulfonates as a novel and major component of sedimentary organic sulfur. The origins of sulfonates in sediments are not clear, although both biological and geochemical mechanisms are possible. The accumulation of oxidized sulfonate sulfur in reducing marine sediments was not known previously; hence, a new perspective in sulfur geochemistry is established. The biogeochemical implications of the presence of sulfonates in marine sediments are discussed.

Marine magnetic survey and onshore gravity and magnetic survey, San Pablo Bay, northern California

USGS Publications Warehouse

Ponce, David A.; Denton, Kevin M.; Watt, Janet T.

2016-09-12

IntroductionFrom November 2011 to August 2015, the U.S. Geological Survey (USGS) collected more than 1,000 line-kilometers (length of lines surveyed in kilometers) of marine magnetic data on San Pablo Bay, 98 onshore gravity stations, and over 27 line-kilometers of ground magnetic data in northern California. Combined magnetic and gravity investigations were undertaken to study subsurface geologic structures as an aid in understanding the geologic framework and earthquake hazard potential in the San Francisco Bay Area. Furthermore, marine magnetic data illuminate local subsurface geologic features in the shallow crust beneath San Pablo Bay where geologic exposure is absent.Magnetic and gravity methods, which reflect contrasting physical properties of the subsurface, are ideal for studying San Pablo Bay. Exposed rock units surrounding San Pablo Bay consist mainly of Jurassic Coast Range ophiolite, Great Valley sequence, Franciscan Complex rocks, Miocene sedimentary rocks, and unconsolidated alluvium (Graymer and others, 2006). The contrasting magnetic and density properties of these rocks enable us to map their subsurface extent.

Anaerobic methanotrophic communities thrive in deep submarine permafrost.

PubMed

Winkel, Matthias; Mitzscherling, Julia; Overduin, Pier P; Horn, Fabian; Winterfeld, Maria; Rijkers, Ruud; Grigoriev, Mikhail N; Knoblauch, Christian; Mangelsdorf, Kai; Wagner, Dirk; Liebner, Susanne

2018-01-22

Thawing submarine permafrost is a source of methane to the subsurface biosphere. Methane oxidation in submarine permafrost sediments has been proposed, but the responsible microorganisms remain uncharacterized. We analyzed archaeal communities and identified distinct anaerobic methanotrophic assemblages of marine and terrestrial origin (ANME-2a/b, ANME-2d) both in frozen and completely thawed submarine permafrost sediments. Besides archaea potentially involved in anaerobic oxidation of methane (AOM) we found a large diversity of archaea mainly belonging to Bathyarchaeota, Thaumarchaeota, and Euryarchaeota. Methane concentrations and δ 13 C-methane signatures distinguish horizons of potential AOM coupled either to sulfate reduction in a sulfate-methane transition zone (SMTZ) or to the reduction of other electron acceptors, such as iron, manganese or nitrate. Analysis of functional marker genes (mcrA) and fluorescence in situ hybridization (FISH) corroborate potential activity of AOM communities in submarine permafrost sediments at low temperatures. Modeled potential AOM consumes 72-100% of submarine permafrost methane and up to 1.2 Tg of carbon per year for the total expected area of submarine permafrost. This is comparable with AOM habitats such as cold seeps. We thus propose that AOM is active where submarine permafrost thaws, which should be included in global methane budgets.

Halite-clay interplay in the Israeli Messinian

NASA Astrophysics Data System (ADS)

Cohen, Avigdor

1993-08-01

The Mavqi'im Formation in Israel is the equivalent of the evaporite part of the Messinian stage (Upper Miocene). It is found in the subsurface in the offshore with eastward extensions into ancient buried channels in the coastal plain and in the Jordan Rift valley and in a few outcrops southwest of Lake Tiberias. Most of the anhydrite horizons can be used as correlation markers. Lateral facies changes between halite, anhydrite and shales can be traced. This is interpreted as contemporaneous sedimentation in giant marine salt ponds (halite and anhydrite) and in drowned desert valleys and/or salt-marsh coasts (shales with sabkha-like anhydrites). Another type of shale is that directly underflooring halite horizons. It is regarded as deep-water halite facies, in contrast with shallow-water facies where halite overlies gypsum and/or anhydrite. A "twofold bull's-eye model" is proposed, which assumes that either: (a) sedimentation of gypsum and halite was 'separated in space'—i.e., gypsum was deposited in the part of the basin proximal to oceanic inlets or on shallow shelves, whereas halite was deposited in the central deep part of the basin or on its distal edge; or (b) sedimentation of gypsum and halite was not contemporaneous, or 'separated in time'—i.e., in the deep parts of the basin gypsum precipitates were disintegrated by anaerobic bacteria which removed the sulfate. The lower limit of gypsum deposition is considered to be 200 m, which is the lower limit of the photic and wave zones. In the Israeli Messinian there is no difference between the clay minerals of marine and fluvial shales. Differentiation of marine shales from fluvial and mud flat shales is based on their geometry, i.e., thin persistent horizons spreading across the whole area versus thick shale lenses wedging out in 500-1000 m distances. Another consideration is the palynologic and microfauna remains: in the first case the cyst/pollen ratio may be as high as 100, whereas in the second pollen is dominant.

A High-Resolution Lipid Biomarker Perspective on North Iceland Shelf Marine Climate over the Last Millennium

NASA Astrophysics Data System (ADS)

Harning, D.; Sepúlveda, J.; Andrews, J. T.; Cabedo-Sanz, P.; Belt, S. T.; Marchitto, T. M.; Stoner, J. S.; Geirsdóttir, Á.; Miller, G. H.

2017-12-01

Icelandic climate is vulnerable to variations in the dominance of competing Arctic and Atlantic ocean currents. The boundary between these water masses delineates the Polar Front, which today occupies the North Iceland Shelf (NIS). To date, Holocene oceanographic reconstructions along the NIS have employed a variety of proxies including Mg/Ca and δ18O of benthic and planktonic foraminifera, quartz and calcite wt%, the alkenone unsaturation index (Uk'37) and biotic species assemblages. Sea surface temperature (SST) proxies are primarily derived from phytoplankton resulting in a seasonal bias toward spring/summer SST. Furthermore, SST proxies can be influenced by additional confounding variables (e.g. salinity, nutrients, depth habitat of biota) resulting in markedly different Holocene temperature reconstructions between proxy datasets. To evaluate the similarities and discrepancies between various marine proxies, we investigate a high-resolution sediment core collected from the central North Iceland Shelf (B997-316GGC, 658 m depth). Sedimentation covers the last millennium, which captures the transition from the Medieval Warm Period to the Little Ice Age. Age control is constrained by 14C dates and paleomagnetic secular variation. To assess marine surface productivity and sea ice conditions, we analyze quartz and calcite wt% via XRD and a series of highly branched isoprenoid biomarkers. Quantitative paleotemperature estimates are derived from a novel combination of Mg/Ca of foraminifera and two lipid biomarker indices, Uk'37 from Prymnesiophyte alkenones and TEX86 from Thaumarchaeota glycerol dialkyl glycerol tetraethers (GDGTs). The latter TEX86 record is the first paleo application in Icelandic waters, which a recent local calibration study suggests may reflect annual or winter sub-surface (0-200 m) temperatures. Our paleotemperature records are bolstered by the analysis of additional sediment core tops, which expand the established Icelandic calibrations. Finally, we perform statistical analyses in an effort to extract a robust record of paleoceanographic change and to test the applicability of various proxies in high-latitude paleoclimate studies.

Enrichment of Fusobacteria in Sea Surface Oil Slicks from the Deepwater Horizon Oil Spill

PubMed Central

Gutierrez, Tony; Berry, David; Teske, Andreas; Aitken, Michael D.

2016-01-01

The Deepwater Horizon (DWH) oil spill led to rapid microbial community shifts in the Gulf of Mexico, including the formation of unprecedented quantities of marine oil snow (MOS) and of a massive subsurface oil plume. The major taxa that bloomed in sea surface oil slicks during the spill included Cycloclasticus, and to a lesser extent Halomonas, Alteromonas, and Pseudoalteromonas—organisms that grow and degrade oil hydrocarbons aerobically. Here, we show that sea surface oil slicks at DWH contained obligate and facultative anaerobic taxa, including members of the obligate anaerobic phylum Fusobacteria that are commonly found in marine sediment environments. Pyrosequencing analysis revealed that Fusobacteria were strongly selected for when sea surface oil slicks were allowed to develop anaerobically. These organisms have been found in oil-contaminated sediments in the Gulf of Mexico, in deep marine oil reservoirs, and other oil-contaminated sites, suggesting they have putative hydrocarbon-degrading qualities. The occurrence and strong selection for Fusobacteria in a lab-based incubation of a sea surface oil slick sample collected during the spill suggests that these organisms may have become enriched in anaerobic zones of suspended particulates, such as MOS. Whilst the formation and rapid sinking of MOS is recognised as an important mechanism by which a proportion of the Macondo oil had been transported to the sea floor, its role in potentially transporting microorganisms, including oil-degraders, from the upper reaches of the water column to the seafloor should be considered. The presence of Fusobacteria on the sea surface—a highly oxygenated environment—is intriguing, and may be explained by the vertical upsurge of oil that provided a carrier to transport these organisms from anaerobic/micro-aerophilic zones in the oil plume or seabed to the upper reaches of the water column. We also propose that the formation of rapidly-sinking MOS may have re-transported these, and other microbial taxa, to the sediment in the Gulf of Mexico. PMID:27681918

Adsorption-desorption of oxytetracycline on marine sediments: Kinetics and influencing factors.

PubMed

Li, Jia; Zhang, Hua

2016-12-01

To reveal the kinetics and mechanisms of antibiotic adsorption/desorption processes, batch and stirred flow chamber (SFC) experiments were carried out with oxytetracycline (OTC) on two marine sediments. The OTC adsorption capacities of the marine sediments were relatively weak and related to their organic carbon (OC) and contents of fine particles. Sorption isotherms of OTC on marine sediment can be well described by both the Langmuir and Freundlich models. Langmuir adsorption maxima (q max ) and Freundlich distribution coefficients (K f ) increased with the decrease of salinity and pH, which indicated the importance of variable charged sites on sediment surfaces. A second order kinetic model successfully described adsorption and desorption kinetics of OTC and well reproduced the concentration change during stop-flow. The adsorption kinetic rates (k a ) for OTC under different experimental conditions ranged from 2.00 × 10 -4 to 1.97 × 10 -3  L (mg min) -1 . Results of SFC experiments indicated that diffusive mass transfer was the dominant mechanism of the time-dependent adsorption of OTC and its release from marine sediment was mildly hysteretic. The high desorption percentage (43-75% for LZB and 58-75% for BHB) implied that binding strength of OTC on two marine sediments was weak. In conclusion, marine sediment characteristics and environmental factors such as salinity, pH, and flow rate are critical factors determine extent of OTC sorption on marine sediment and need to be incorporated in modeling fate and transport of OTC in marine environment. Copyright © 2016 Elsevier Ltd. All rights reserved.

Biosurfactant-induced remediation of contaminated marine sediments: Current knowledge and future perspectives.

PubMed

Dell'Anno, F; Sansone, C; Ianora, A; Dell'Anno, A

2018-06-01

The contamination of marine sediments is widespread in coastal regions of the world and represents a major concern for the potential detrimental consequences on ecosystems' health and provision of goods and services for human wellbeing. Thus, there is an urgent need to find sustainable and eco-compatible solutions for the remediation of contaminated sediments. Bioremediation is a low cost and environmental-friendly strategy with a high potential for the remediation of contaminated marine sediments. Here we review the potential application of biosurfactants produced by microbial taxa for the remediation of contaminated marine sediments and we discuss future research needs to develop efficient and eco-sustainable biosurfactant-based strategies for the recovery of contaminated marine sediments, in view of large-scale applications. Copyright © 2018 Elsevier Ltd. All rights reserved.

Sorption and oxic degradation of the explosive CL-20 during transport in subsurface sediments.

PubMed

Szecsody, J E; Girvin, D C; Devary, B J; Campbell, J A

2004-08-01

The abiotic sorption and oxic degradation processes that control the fate of the explosive CL-20, Hexanitrohexaazaisowurtzitane, in the subsurface environment were investigated to determine the potential for vadose and groundwater contamination. Sorption of aqueous CL-20 is relatively small (K(d) = 0.02-3.83 cm3 g(-1) for 7 sediments and 12 minerals), which results in only slight retardation relative to water movement. Thus, CL-20 could move quickly through unsaturated and saturated sediments of comparable composition to groundwater, similar to the subsurface behavior of RDX. CL-20 sorption was mainly to mineral surfaces of the sediments, and the resulting isotherm was nonlinear. CL-20 abiotically degrades in oxic environments at slow rates (i.e., 10s to 100s of hours) with a wide variety of minerals, but at fast rates (i.e., minutes) in the presence of 2:1 phyllosilicate clays (hectorite, montmorillonite, nontronite), micas (biotite, illite), and specific oxides (MnO2 and the ferrous-ferric iron oxide magnetite). High concentrations of surface ferrous iron in a dithionite reduced sediment degraded CL-20 the fastest (half-life < 0.05 h), but 2:1 clays containing no structural or adsorbed ferrous iron (hectorite) could also quickly degrade CL-20 (half-life < 0.2 h). CL-20 degradation rates were slower in natural sediments (half-life 3-800 h) compared to minerals. Sediments with slow degradation rates and small sorption would exhibit the highest potential for deep subsurface migration. Products of CL-20 oxic degradation included three high molecular weight compounds and anions (nitrite and formate). The 2-3.5 moles of nitrite produced suggest CL-20 nitro-groups are degraded, and the amount of formate produced (0.2-1.2 moles) suggests the CL-20 cage structure is broken in some sediments. Identification of further degradation products and CL-20 mineralization rates is needed to fully assess the impact of these CL-20 transformation rates on the risk of CL-20 (and degradation product) subsurface movement.

Controls of tectonics and sediment source locations on along-strike variations in transgressive deposits on the northern California margin

USGS Publications Warehouse

Spinelli, G.A.; Field, M.E.

2003-01-01

We identify two surfaces in the shallow subsurface on the Eel River margin offshore northern California, a lowstand erosion surface, likely formed during the last glacial maximum, and an overlying surface likely formed during the most recent transgression of the shoreline. The lowstand erosion surface, which extends from the inner shelf to near the shelfbreak and from the Eel River to Trinidad Head (???80 km), truncates underlying strata on the shelf. Above the surface, inferred transgressive coastal and estuarine sedimentary units separate it from the transgressive surface on the shelf. Early in the transgression, Eel River sediment was likely both transported down the Eel Canyon and dispersed on the slope, allowing transgressive coastal sediment from the smaller Mad River to accumulate in a recognizable deposit on the shelf. The location of coastal Mad River sediment accumulation was controlled by the location of the paleo-Mad River. Throughout the remainder of the transgression, dispersed sediment from the Eel River accumulated an average of 20 m of onlapping shelf deposits. The distribution and thickness of these transgressive marine units was strongly modified by northwest-southeast trending folds. Thick sediment packages accumulated over structural lows in the lowstand surface. The thinnest sediment accumulations (0-10 m) were deposited over structural highs along faults and uplifting anticlines. The Eel margin, an active margin with steep, high sediment-load streams, has developed a thick transgressive systems tract. On this margin sediment accumulates as rapidly as the processes of uplift and downwarp locally create and destroy accommodation space. Sequence stratigraphic models of tectonically active margins should account for variations in accommodation space along margins as well as across them. ?? 2003 Elsevier Science B.V. All rights reserved.

Sampling surface and subsurface particle-size distributions in wadable gravel-and cobble-bed streams for analyses in sediment transport, hydraulics, and streambed monitoring

Treesearch

Kristin Bunte; Steven R. Abt

2001-01-01

This document provides guidance for sampling surface and subsurface sediment from wadable gravel-and cobble-bed streams. After a short introduction to streams types and classifications in gravel-bed rivers, the document explains the field and laboratory measurement of particle sizes and the statistical analysis of particle-size distributions. Analysis of particle...

Watershed scale fungal community characterization along a pH gradient in a subsurface environment co-contaminated with uranium and nitrate

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jasrotia, Puja; Green, Stefan; Canion, Andy

2014-01-01

The objective of this study was to characterize fungal communities in a subsurface environment co-contaminated with uranium and nitrate at the watershed scale, and to determine the potential contribution of fungi to contaminant transformation (nitrate attenuation). The abundance, distribution and diversity of fungi in subsurface groundwater samples were determined using quantitative and semi-quantitative molecular techniques, including quantitative PCR of eukaryotic SSU rRNA genes and pyrosequencing of fungal internal transcribed spacer (ITS) regions. Potential bacterial and fungal denitrification was assessed in sediment-groundwater slurries amended with antimicrobial compounds and in fungal pure cultures isolated from subsurface. Our results demonstrate that subsurface fungalmore » communities are dominated by members of the phylum Ascomycota, and a pronounced shift in fungal community composition occurs across the groundwater pH gradient at the field site, with lower diversity observed under acidic (pH < 4.5) conditions. Fungal isolates recovered from subsurface sediments were shown to reduce nitrate to nitrous oxide, including cultures of the genus Coniochaeta that were detected in abundance in pyrosequence libraries of site groundwater samples. Denitrifying fungal isolates recovered from the site were classified, and found to be distributed broadly within the phylum Ascomycota, and within a single genus within the Basidiomycota. Potential denitrification rate assays with sediment-groundwater slurries showed the potential for subsurface fungi to reduce nitrate to nitrous oxide under in situ acidic pH conditions.« less

Watershed-Scale Fungal Community Characterization along a pH Gradient in a Subsurface Environment Cocontaminated with Uranium and Nitrate

PubMed Central

Jasrotia, Puja; Green, Stefan J.; Canion, Andy; Overholt, Will A.; Prakash, Om; Wafula, Denis; Hubbard, Daniela; Watson, David B.; Schadt, Christopher W.; Brooks, Scott C.

2014-01-01

The objective of this study was to characterize fungal communities in a subsurface environment cocontaminated with uranium and nitrate at the watershed scale and to determine the potential contribution of fungi to contaminant transformation (nitrate attenuation). The abundance, distribution, and diversity of fungi in subsurface groundwater samples were determined using quantitative and semiquantitative molecular techniques, including quantitative PCR of eukaryotic small-subunit rRNA genes and pyrosequencing of fungal internal transcribed spacer (ITS) regions. Potential bacterial and fungal denitrification was assessed in sediment-groundwater slurries amended with antimicrobial compounds and in fungal pure cultures isolated from the subsurface. Our results demonstrate that subsurface fungal communities are dominated by members of the phylum Ascomycota, and a pronounced shift in fungal community composition occurs across the groundwater pH gradient at the field site, with lower diversity observed under acidic (pH <4.5) conditions. Fungal isolates recovered from subsurface sediments, including cultures of the genus Coniochaeta, which were detected in abundance in pyrosequence libraries of site groundwater samples, were shown to reduce nitrate to nitrous oxide. Denitrifying fungal isolates recovered from the site were classified and found to be distributed broadly within the phylum Ascomycota and within a single genus of the Basidiomycota. Potential denitrification rate assays with sediment-groundwater slurries showed the potential for subsurface fungi to reduce nitrate to nitrous oxide under in situ acidic pH conditions. PMID:24389927

Sedimentary Catalysis of Radiolytic Hydrogen Production - A Global Perspective

NASA Astrophysics Data System (ADS)

Sauvage, J.; Spivack, A. J.; Smith, D. C.; Anderson, C. H.; Murray, R. W.; D'Hondt, S.

2016-12-01

Constraining rates of various energy- producing metabolic reactions is central to our understanding of subsurface microbial ecosystems. Radiolytic hydrogen (H2), produced by the radioactive splitting of water due to the natural decay of elements in the sediment, has been proposed to be a significant electron donor in sediment of oligothrophic oceanic regions. However accurate constraints of in situ production rates are required to test this hypothesis. We experimentally quantified radiolytic H2 yields (H2 produced per unit of absorbed energy in solution) due to γ radiation (Cs-137) and α radiation (Po-210) in marine sediment by exposing seawater slurries of sediment to radiation and measuring the production of H2. We selected 28 samples from different ocean basins and depositional environments aiming to capture the range of representative lithologies found across the global ocean. These experiments demonstrate that marine sediment greatly amplifies the production of radiolytic H2 production compared to pure water, with seawater-saturated abyssal clay exhibiting the highest yield. South Pacific Gyre [SPG], North Atlantic [NA] and North Pacific Gyre [NPG] abyssal clays amplify H2 production by factors of 13, 16 and 33, respectively. Calcareous ooze amplifies radiolytic H2 production by an average factor of 5. Despite continual production, dissolved H2 concentrations are generally below detection in oxic subseafloor sediment of the SPG, NPG and NA. This suggests that the aerobic H2 oxidation rate (Knallgas reaction) is essentially equal to its production rate in these environments. We assess the relative importance of buried organic matter and radiolytic H2 in terms of electron donor availability by comparing rates of radiolytic H2 production to rates of net O2 respiration (inferred to equal rates of organic oxidation). For NA, SPG and NPG abyssal clay older than a few million years, radiolytic H2 production rates are respectively factors of 20, 30 and 49 higher than rates of organic-fueled respiration rates. Extrapolating these results, we infer that radiolytic H2 is likely to be the predominant electron donor for subseafloor sedimentary communities throughout 37% of the global ocean.

Dispersion of Sound in Marine Sediments

DTIC Science & Technology

2015-09-30

primary objective of this work is to investigate the approach to use the information in the extracted mode amplitudes to invert for sound attenuation...marine sediment. APPROACH Previous work carried out on the use of modal amplitude information for estimating sound attenuation in the sediments...investigate the intrinsic modal interference. Estimation of sound attenuation in marine sediments from modal amplitudes requires knowledge of the

Methane in Sediments From Three Tropical, Coastal Lagoons on the Yucatan Peninsula, Mexico

NASA Astrophysics Data System (ADS)

Young, B.; Paytan, A.; Miller, L.; Herrera-Silveira, J.

2002-12-01

Tropical wetlands are significant sources of methane (CH4) to the atmosphere, and the majority of research on methane flux and cycling in the tropics has been conducted in fresh-water wetlands and lakes. However, several previous studies have shown that tropical coastal ecosystems can produce significant methane flux to the atmosphere despite the presence of moderate to marine salinities. Information regarding methane cycling within the sediments is crucial to understanding how natural and anthropogenic changes may influence these systems. We measured methane concentrations in sediments from two tropical coastal lagoons during different seasons, as well as in a third, heavily polluted, lagoon (Terminos) during the rainy season. These three lagoons, Celestun, Chelem, and Terminos, have similar vegetation, seasonal temperature and rainfall patterns, and substrate geology, but very different levels of ground water discharge and pollution. Methane concentrations in Celestun and Terminos lagoon showed high spatial variability(> 0.001 to 5 mmol kg-1 wet sediment), while sediments in Chelem Lagoon, which has near marine salinities and little sewage discharge, showed much lower variability of methane concentrations. Methane concentrations in Celestun sediments displayed two predominant patterns: some profiles contained a peak in methane concentration (1 to 2 mmole methane kg-1 wet sediment) between 5 and 15 cm below the surface while the other sediment profiles instead displayed a steady or monotonic increase in methane concentration with depth to approximately 0.025-0.080 mmol kg-1 at 10-15cm below surface followed by stable methane concentrations to the bottom of the cores (20-45 cm below the surface). A subsurface peak in methane concentrations was also found in some locations in Chelem, however, the concentrations were much lower than those measured in Celestun. Previous studies have shown that sewage pollution may drastically increase methane production in tropical coastal ecosystems. Laboratory experiments using sediment from the upper 20 cm in Celestun lagoon resulted in high rates of biogenic production of methane from the addition of trimethylamine, hydrogen, and, while additions of formate and acetate stimulated methane production to a lesser extent. This indicates that methane production in these sediments may be highly responsive to natural or anthropogenic changes in substrate availability. By synthesizing laboratory data and extensive field measurements from the lagoons, we hope to shed light on the factors controlling methane cycling in these sediments, and to better estimate methane flux to the atmosphere from these ecosystems.

Microbial communities in methane seep sediments along US Atlantic Margin are structured by organic matter and seepage dynamics

NASA Astrophysics Data System (ADS)

Graw, M. F.; Pohlman, J.; Treude, T.; Ruppel, C. D.; Colwell, F. S.

2016-12-01

Methane seeps are dynamic environments on continental margins where subsurface methane reaches the ocean. Microbial communities play a critical role in carbon cycling within seep sediments via organic carbon degradation, methane production, and anaerobic oxidation of methane (AOM), which consumes 20-80% of methane in seep sediments. However, biogeochemical controls on microbial community structure at seeps on a margin-wide scale remain unclear. The passive US Atlantic Margin (USAM) has been identified as a region of active methane seepage. Passive margin seeps have traditionally been understudied relative to seeps on active margins. Passive margins exhibit large cross-margin variability in organic carbon deposition and are anticipated to have divergent seep dynamics from active margins. Thus, the USAM offers a unique opportunity to investigate controls on microbial communities in seep sediments. We undertook analysis of microbial communities inhabiting seep sediments at 6 biogeochemically distinct sites along the USAM. Microbiological samples were co-located with measurements of sediment geochemistry and AOM and sulfate reduction rates. Illumina sequencing of the 16S rRNA gene, using both universal (83 samples) and archaeal-specific (64 samples) primers, and the mcrA gene (18 samples) identified 44 bacterial phyla and 7 archaeal phyla. Seeps in canyons and on open slope, likely representing high and low organic content sediments, hosted distinct communities; the former was dominated by ammonia-oxidizing Marine Group I Thaumarchaeota and the latter by mixotrophic Hadesarchaeota. Seep stability also impacted microbial community structure, and in particular the establishment of an AOM community rather than a Bathyarchaeota-dominated community. These findings contribute to understanding how microbial communities are structured within methane seep sediments and pave the way for investigating broad differences in carbon cycling between seeps on passive and active margins.

Metabolic stratification driven by surface and subsurface interactions in a terrestrial mud volcano.

PubMed

Cheng, Ting-Wen; Chang, Yung-Hsin; Tang, Sen-Lin; Tseng, Ching-Hung; Chiang, Pei-Wen; Chang, Kai-Ti; Sun, Chih-Hsien; Chen, Yue-Gau; Kuo, Hung-Chi; Wang, Chun-Ho; Chu, Pao-Hsuan; Song, Sheng-Rong; Wang, Pei-Ling; Lin, Li-Hung

2012-12-01

Terrestrial mud volcanism represents the prominent surface geological feature, where fluids and hydrocarbons are discharged along deeply rooted structures in tectonically active regimes. Terrestrial mud volcanoes (MVs) directly emit the major gas phase, methane, into the atmosphere, making them important sources of greenhouse gases over geological time. Quantification of methane emission would require detailed insights into the capacity and efficiency of microbial metabolisms either consuming or producing methane in the subsurface, and establishment of the linkage between these methane-related metabolisms and other microbial or abiotic processes. Here we conducted geochemical, microbiological and genetic analyses of sediments, gases, and pore and surface fluids to characterize fluid processes, community assemblages, functions and activities in a methane-emitting MV of southwestern Taiwan. Multiple lines of evidence suggest that aerobic/anaerobic methane oxidation, sulfate reduction and methanogenesis are active and compartmentalized into discrete, stratified niches, resembling those in marine settings. Surface evaporation and oxidation of sulfide minerals are required to account for the enhanced levels of sulfate that fuels subsurface sulfate reduction and anaerobic methanotrophy. Methane flux generated by in situ methanogenesis appears to alter the isotopic compositions and abundances of thermogenic methane migrating from deep sources, and to exceed the capacity of microbial consumption. This metabolic stratification is sustained by chemical disequilibria induced by the mixing between upward, anoxic, methane-rich fluids and downward, oxic, sulfate-rich fluids.

Large fluctuations of dissolved oxygen in the Indian and Pacific oceans during Dansgaard-Oeschger oscillations caused by variations of North Atlantic Deep Water subduction

NASA Astrophysics Data System (ADS)

Schmittner, Andreas; Galbraith, Eric D.; Hostetler, Steven W.; Pedersen, Thomas F.; Zhang, Rong

2007-09-01

Paleoclimate records from glacial Indian and Pacific oceans sediments document millennial-scale fluctuations of subsurface dissolved oxygen levels and denitrification coherent with North Atlantic temperature oscillations. Yet the mechanism of this teleconnection between the remote ocean basins remains elusive. Here we present model simulations of the oxygen and nitrogen cycles that explain how changes in deepwater subduction in the North Atlantic can cause large and synchronous variations of oxygen minimum zones throughout the Northern Hemisphere of the Indian and Pacific oceans, consistent with the paleoclimate records. Cold periods in the North Atlantic are associated with reduced nutrient delivery to the upper Indo-Pacific oceans, thereby decreasing productivity. Reduced export production diminishes subsurface respiration of organic matter leading to higher oxygen concentrations and less denitrification. This effect of reduced oxygen consumption dominates at low latitudes. At high latitudes in the Southern Ocean and North Pacific, increased mixed layer depths and steepening of isopycnals improve ocean ventilation and oxygen supply to the subsurface. Atmospheric teleconnections through changes in wind-driven ocean circulation modify this basin-scale pattern regionally. These results suggest that changes in the Atlantic Ocean circulation, similar to those projected by climate models to possibly occur in the centuries to come because of anthropogenic climate warming, can have large effects on marine ecosystems and biogeochemical cycles even in remote areas.

Metabolic stratification driven by surface and subsurface interactions in a terrestrial mud volcano

PubMed Central

Cheng, Ting-Wen; Chang, Yung-Hsin; Tang, Sen-Lin; Tseng, Ching-Hung; Chiang, Pei-Wen; Chang, Kai-Ti; Sun, Chih-Hsien; Chen, Yue-Gau; Kuo, Hung-Chi; Wang, Chun-Ho; Chu, Pao-Hsuan; Song, Sheng-Rong; Wang, Pei-Ling; Lin, Li-Hung

2012-01-01

Terrestrial mud volcanism represents the prominent surface geological feature, where fluids and hydrocarbons are discharged along deeply rooted structures in tectonically active regimes. Terrestrial mud volcanoes (MVs) directly emit the major gas phase, methane, into the atmosphere, making them important sources of greenhouse gases over geological time. Quantification of methane emission would require detailed insights into the capacity and efficiency of microbial metabolisms either consuming or producing methane in the subsurface, and establishment of the linkage between these methane-related metabolisms and other microbial or abiotic processes. Here we conducted geochemical, microbiological and genetic analyses of sediments, gases, and pore and surface fluids to characterize fluid processes, community assemblages, functions and activities in a methane-emitting MV of southwestern Taiwan. Multiple lines of evidence suggest that aerobic/anaerobic methane oxidation, sulfate reduction and methanogenesis are active and compartmentalized into discrete, stratified niches, resembling those in marine settings. Surface evaporation and oxidation of sulfide minerals are required to account for the enhanced levels of sulfate that fuels subsurface sulfate reduction and anaerobic methanotrophy. Methane flux generated by in situ methanogenesis appears to alter the isotopic compositions and abundances of thermogenic methane migrating from deep sources, and to exceed the capacity of microbial consumption. This metabolic stratification is sustained by chemical disequilibria induced by the mixing between upward, anoxic, methane-rich fluids and downward, oxic, sulfate-rich fluids. PMID:22739492

Subsurface metagenomes uncover a vast repertoire of hypervariable proteins encoded by genetic elements in uncultivated organisms and viruses

NASA Astrophysics Data System (ADS)

Paul, B. G.; Burstein, D.; Castelle, C. J.; Banfield, J. F.; Valentine, D. L.; Miller, J. F.; Ghosh, P.; Handa, S.; Arambula, D.; Czornyj, E.; Thomas, B. C.

2016-12-01

Uncultivated microorganisms primarily account for the remarkable diversity harbored in subsurface environments and represent an expansive subset of the current Tree of Life. Recent metagenomic efforts to investigate subsurface biomes have unveiled an array of bacterial and archaeal candidate phyla, whose members have minimal genomes and an apparent host-dependent existence. Still, little is known about the adaptive strategies that mediate host interactions in these organisms or their viruses. Genomic features known as diversity-generating retroelements (DGRs), which guide variability into targeted genes, were recently discovered in two single-cell genomes of uncultivated nanoarchaea, and independently in the genome of a marine virus from methane seep sediments. These prodigious drivers of protein hypervariability were first identified as the key force behind phage tail fiber diversification for binding different host receptors. Since their discovery, approximately 500 new DGRs have been found across a wide range of bacterial genomes representing various niches. We identified an unexpected 1136 distinct diversifiers from a single groundwater environment in reconstructed microbial genomes and genome fragments. The newly detected DGRs - predominantly linked to members of the candidate phyla radiation (CPR) - appear to target genes associated with cell-cell attachment, signaling, and transcription regulation. These findings suggest that targeted protein diversification may have an important role in regulating symbiotic or parasitic associations in groundwater microbiomes.

The use of the Novosol process for the treatment of polluted marine sediment.

PubMed

Zoubeir, Lafhaj; Adeline, Saliceto; Laurent, Cohen Solal; Yoann, Coudray; Truc, Huynh Trung; Benoît, Le Guen; Federico, Anguoni

2007-09-30

The work presented in this article concerns polluted marine sediments. The article is divided into three parts. The first part discusses existing industrial procedures of treatment. The second part introduces the Novosol((R)) process, which was used for the treatment of polluted marine sediments. This process is based on the stabilization of heavy metals in the solid matrix by phosphatation and the destruction of organic matter by calcination. Finally, after a comparison had been made between environmental results obtained on both polluted marine sediments and inert ones, treated sediments were introduced in the production of clay bricks. The results obtained show that the Novosol process leads to the immobilization of most heavy metals and can be considered as an efficient tool for the stabilisation of polluted marine sediment. Thus, the results of physical and mechanical tests as compressive strength and water absorption indicate that performances obtained were comparable to standard brick values. These results confirm that, once treated, polluted sediments can be recycled.

Microbial diversity and stratification of South Pacific abyssal marine sediments.

PubMed

Durbin, Alan M; Teske, Andreas

2011-12-01

Abyssal marine sediments cover a large proportion of the ocean floor, but linkages between their microbial community structure and redox stratification have remained poorly constrained. This study compares the downcore gradients in microbial community composition to porewater oxygen and nitrate concentration profiles in an abyssal marine sediment column in the South Pacific Ocean. Archaeal 16S rRNA clone libraries showed a stratified archaeal community that changed from Marine Group I Archaea in the aerobic and nitrate-reducing upper sediment column towards deeply branching, uncultured crenarchaeotal and euryarchaeotal lineages in nitrate-depleted, anaerobic sediment horizons. Bacterial 16S rRNA clone libraries revealed a similar shift on the phylum and subphylum level within the bacteria, from a complex community of Alpha-, Gamma- and Deltaproteobacteria, Actinobacteria and Gemmatimonadetes in oxic surface sediments towards uncultured Chloroflexi and Planctomycetes in the anaerobic sediment column. The distinct stratification of largely uncultured bacterial and archaeal groups within the oxic and nitrate-reducing marine sediment column provides initial constraints for their microbial habitat preferences. © 2011 Society for Applied Microbiology and Blackwell Publishing Ltd.

Tracking riverborne sediment and contaminants in Commencement Bay, Washington, using geochemical signatures

USGS Publications Warehouse

Takesue, Renee K.; Conn, Kathleen E.; Dinicola, Richard S.

2017-09-29

Large rivers carry terrestrial sediment, contaminants, and other materials to the coastal zone where they can affect marine biogeochemical cycles and ecosystems. This U.S. Geological Survey study combined river and marine sediment geochemistry and organic contaminant analyses to identify riverborne sediment and associated contaminants at shoreline sites in Commencement Bay, Puget Sound, Washington, that could be used by adult forage fish and other marine organisms. Geochemical signatures distinguished the fine fraction (<0.063 millimeter, mm) of Puyallup River sediment—which originates from Mount Rainier, a Cascade volcano—from glacial fine sediment in lowland bluffs that supply sediment to beaches. In combination with activities of beryllium-7 (7Be), a short-lived radionuclide, geochemical signatures showed that winter 2013–14 sediment runoff from the Puyallup River was transported to and deposited along the north shore of Commencement Bay, then mixed downward into the sediment column. The three Commencement Bay sites at which organic contaminants were measured in surface sediment did not have measurable 7Be activities in that layer, so their contaminant assemblages were attributed to sources from previous years. Concentrations of organic contaminants (the most common of which were polycyclic aromatic hydrocarbons, polychlorinated biphenyls, and fecal sterols) were higher in the <0.063-mm fraction compared to the <2-mm fraction, in winter compared to summer, in river suspended sediment compared to river bar and bank sediment, and in marine sediment compared to river sediment. The geochemical property barium/aluminum (Ba/Al) showed that the median percentage of Puyallup River derived fine surface sediment along the shoreline of Commencement Bay was 77 percent. This finding, in combination with higher concentrations of organic contaminants in marine rather than river sediment, indicates that riverborne sediment-bound contaminants are retained in shallow marine habitats of Commencement Bay. The retention of earlier inputs complicates efforts to identify recent inputs and sources. Understanding modern sources and fates of riverborne sediment and contaminants and their potential ecological impacts will therefore require a suite of targeted geochemical studies in such marine depositional environments.

Diagenesis in subrecent marine sediments in the Eastern Scheldt, Southwest Netherlands

NASA Astrophysics Data System (ADS)

Oenema, O.

The diagenesis in fine-grained sediments from a 300 to 400-years-old Dunkirk deposit, exposed on the intertidal flat, was studied at a site in the Eastern Scheldt. A new in situ pore water sampling technique that allowed repeated sampling at exactly the same place was used to monitor the seasonal fluctuations in interstitial water composition. Concentrations of organic carbon (1.5 to 2%), nitrogen (C/N = 19), phosphorus (500 μg·g -1) and manganese (250 μg·g -1) in the subrecent anoxic sediments were low, probably because they had already been depleted during earlier stages of diagenesis. Rates of organic carbon mineralization by sulphate reduction (0.1 Mole·m -2·y -1) and rates of nutrient regeneration were 1 to 2 orders of magnitude lower than in recent fine-grained sediments elsewhere in the Eastern Scheldt. Pore water NH 4+ and ΣPO 4 concentrations were controlled by mineralization, uptake by Zostera noltii and sediment-seawater exchange. During the summer the uptake exceeded the mineralization rate at 0 to 5 cm. Mineralization and diffusional processes dominated the changes in the NH 4+ and ΣPO 4 profiles in the other seasons. Dissolved manganese and iron concentrations showed a typical subsurface maximum at 0 to 3 cm, and low (<5 μMole) concentrations below this depth. Dissolved iron concentrations were probably controlled by the solubility of iron sulphides, and manganese probably by the solubility of Mn, Ca-carbonate.

Deep Subsurface Life from North Pond: Enrichment, Isolation, Characterization and Genomes of Heterotrophic Bacteria

PubMed Central

Russell, Joseph A.; León-Zayas, Rosa; Wrighton, Kelly; Biddle, Jennifer F.

2016-01-01

Studies of subsurface microorganisms have yielded few environmentally relevant isolates for laboratory studies. In order to address this lack of cultivated microorganisms, we initiated several enrichments on sediment and underlying basalt samples from North Pond, a sediment basin ringed by basalt outcrops underlying an oligotrophic water-column west of the Mid-Atlantic Ridge at 22°N. In contrast to anoxic enrichments, growth was observed in aerobic, heterotrophic enrichments from sediment of IODP Hole U1382B at 4 and 68 m below seafloor (mbsf). These sediment depths, respectively, correspond to the fringes of oxygen penetration from overlying seawater in the top of the sediment column and upward migration of oxygen from oxic seawater from the basalt aquifer below the sediment. Here we report the enrichment, isolation, initial characterization and genomes of three isolated aerobic heterotrophs from North Pond sediments; an Arthrobacter species from 4 mbsf, and Paracoccus and Pseudomonas species from 68 mbsf. These cultivated bacteria are represented in the amplicon 16S rRNA gene libraries created from whole sediments, albeit at low (up to 2%) relative abundance. We provide genomic evidence from our isolates demonstrating that the Arthrobacter and Pseudomonas isolates have the potential to respire nitrate and oxygen, though dissimilatory nitrate reduction could not be confirmed in laboratory cultures. The cultures from this study represent members of abundant phyla, as determined by amplicon sequencing of environmental DNA extracts, and allow for further studies into geochemical factors impacting life in the deep subsurface. PMID:27242705

Deep Subsurface Life from North Pond: Enrichment, Isolation, Characterization and Genomes of Heterotrophic Bacteria.

PubMed

Russell, Joseph A; León-Zayas, Rosa; Wrighton, Kelly; Biddle, Jennifer F

2016-01-01

Studies of subsurface microorganisms have yielded few environmentally relevant isolates for laboratory studies. In order to address this lack of cultivated microorganisms, we initiated several enrichments on sediment and underlying basalt samples from North Pond, a sediment basin ringed by basalt outcrops underlying an oligotrophic water-column west of the Mid-Atlantic Ridge at 22°N. In contrast to anoxic enrichments, growth was observed in aerobic, heterotrophic enrichments from sediment of IODP Hole U1382B at 4 and 68 m below seafloor (mbsf). These sediment depths, respectively, correspond to the fringes of oxygen penetration from overlying seawater in the top of the sediment column and upward migration of oxygen from oxic seawater from the basalt aquifer below the sediment. Here we report the enrichment, isolation, initial characterization and genomes of three isolated aerobic heterotrophs from North Pond sediments; an Arthrobacter species from 4 mbsf, and Paracoccus and Pseudomonas species from 68 mbsf. These cultivated bacteria are represented in the amplicon 16S rRNA gene libraries created from whole sediments, albeit at low (up to 2%) relative abundance. We provide genomic evidence from our isolates demonstrating that the Arthrobacter and Pseudomonas isolates have the potential to respire nitrate and oxygen, though dissimilatory nitrate reduction could not be confirmed in laboratory cultures. The cultures from this study represent members of abundant phyla, as determined by amplicon sequencing of environmental DNA extracts, and allow for further studies into geochemical factors impacting life in the deep subsurface.

Distribution of dehalogenation activity in subseafloor sediments of the Nankai Trough subduction zone

PubMed Central

Futagami, Taiki; Morono, Yuki; Terada, Takeshi; Kaksonen, Anna H.; Inagaki, Fumio

2013-01-01

Halogenated organic matter buried in marine subsurface sediment may serve as a source of electron acceptors for anaerobic respiration of subseafloor microbes. Detection of a diverse array of reductive dehalogenase-homologous (rdhA) genes suggests that subseafloor organohalide-respiring microbial communities may play significant ecological roles in the biogeochemical carbon and halogen cycle in the subseafloor biosphere. We report here the spatial distribution of dehalogenation activity in the Nankai Trough plate-subduction zone of the northwest Pacific off the Kii Peninsula of Japan. Incubation experiments with slurries of sediment collected at various depths and locations showed that degradation of several organohalides tested only occurred in the shallow sedimentary basin, down to 4.7 metres below the seafloor, despite detection of rdhA in the deeper sediments. We studied the phylogenetic diversity of the metabolically active microbes in positive enrichment cultures by extracting RNA, and found that Desulfuromonadales bacteria predominate. In addition, for the isolation of genes involved in the dehalogenation reaction, we performed a substrate-induced gene expression screening on DNA extracted from the enrichment cultures. Diverse DNA fragments were obtained and some of them showed best BLAST hit to known organohalide respirers such as Dehalococcoides, whereas no functionally known dehalogenation-related genes such as rdhA were found, indicating the need to improve the molecular approach to assess functional genes for organohalide respiration. PMID:23479745

Distribution of dehalogenation activity in subseafloor sediments of the Nankai Trough subduction zone.

PubMed

Futagami, Taiki; Morono, Yuki; Terada, Takeshi; Kaksonen, Anna H; Inagaki, Fumio

2013-04-19

Halogenated organic matter buried in marine subsurface sediment may serve as a source of electron acceptors for anaerobic respiration of subseafloor microbes. Detection of a diverse array of reductive dehalogenase-homologous (rdhA) genes suggests that subseafloor organohalide-respiring microbial communities may play significant ecological roles in the biogeochemical carbon and halogen cycle in the subseafloor biosphere. We report here the spatial distribution of dehalogenation activity in the Nankai Trough plate-subduction zone of the northwest Pacific off the Kii Peninsula of Japan. Incubation experiments with slurries of sediment collected at various depths and locations showed that degradation of several organohalides tested only occurred in the shallow sedimentary basin, down to 4.7 metres below the seafloor, despite detection of rdhA in the deeper sediments. We studied the phylogenetic diversity of the metabolically active microbes in positive enrichment cultures by extracting RNA, and found that Desulfuromonadales bacteria predominate. In addition, for the isolation of genes involved in the dehalogenation reaction, we performed a substrate-induced gene expression screening on DNA extracted from the enrichment cultures. Diverse DNA fragments were obtained and some of them showed best BLAST hit to known organohalide respirers such as Dehalococcoides, whereas no functionally known dehalogenation-related genes such as rdhA were found, indicating the need to improve the molecular approach to assess functional genes for organohalide respiration.

Marine biogeochemistry: Methylmercury manufacture

NASA Astrophysics Data System (ADS)

Cossa, Daniel

2013-10-01

The neurotoxin methylmercury can accumulate in marine food webs, contaminating seafood. An analysis of the isotopic composition of fish in the North Pacific suggests that much of the mercury that enters the marine food web originates from low-oxygen subsurface waters.

Phylogenetic and enzymatic diversity of deep subseafloor aerobic microorganisms in organics- and methane-rich sediments off Shimokita Peninsula.

PubMed

Kobayashi, Tohru; Koide, Osamu; Mori, Kozue; Shimamura, Shigeru; Matsuura, Takae; Miura, Takeshi; Takaki, Yoshihiro; Morono, Yuki; Nunoura, Takuro; Imachi, Hiroyuki; Inagaki, Fumio; Takai, Ken; Horikoshi, Koki

2008-07-01

"A meta-enzyme approach" is proposed as an ecological enzymatic method to explore the potential functions of microbial communities in extreme environments such as the deep marine subsurface. We evaluated a variety of extra-cellular enzyme activities of sediment slurries and isolates from a deep subseafloor sediment core. Using the new deep-sea drilling vessel "Chikyu", we obtained 365 m of core sediments that contained approximately 2% organic matter and considerable amounts of methane from offshore the Shimokita Peninsula in Japan at a water depth of 1,180 m. In the extra-sediment fraction of the slurry samples, phosphatase, esterase, and catalase activities were detected consistently throughout the core sediments down to the deepest slurry sample from 342.5 m below seafloor (mbsf). Detectable enzyme activities predicted the existence of a sizable population of viable aerobic microorganisms even in deep subseafloor habitats. The subsequent quantitative cultivation using solid media represented remarkably high numbers of aerobic, heterotrophic microbial populations (e.g., maximally 4.4x10(7) cells cm(-3) at 342.5 mbsf). Analysis of 16S rRNA gene sequences revealed that the predominant cultivated microbial components were affiliated with the genera Bacillus, Shewanella, Pseudoalteromonas, Halomonas, Pseudomonas, Paracoccus, Rhodococcus, Microbacterium, and Flexibacteracea. Many of the predominant and scarce isolates produced a variety of extra-cellular enzymes such as proteases, amylases, lipases, chitinases, phosphatases, and deoxyribonucleases. Our results indicate that microbes in the deep subseafloor environment off Shimokita are metabolically active and that the cultivable populations may have a great potential in biotechnology.

Sources and distributions of branched and isoprenoid tetraether lipids on the Amazon shelf and fan: Implications for the use of GDGT-based proxies in marine sediments

NASA Astrophysics Data System (ADS)

Zell, Claudia; Kim, Jung-Hyun; Hollander, David; Lorenzoni, Laura; Baker, Paul; Silva, Cleverson Guizan; Nittrouer, Charles; Sinninghe Damsté, Jaap S.

2014-08-01

Branched glycerol dialkyl glycerol tetraethers (brGDGTs) in river fan sediments have been used successfully to reconstruct mean annual air temperature (MAAT) and soil pH of the Congo River drainage basin. However, in a previous study of Amazon deep-sea fan sediments the reconstructed MAATs were ca. 10 °C colder than the actual MAAT of the Amazon basin. In this study we investigated this apparent offset, by comparing the concentrations and distributions of brGDGTs in Amazon River suspended particulate matter (SPM) and sediments to those in marine SPM and surface sediments. The riverine brGDGT input was evident from the elevated brGDGT concentrations in marine SPM and surface sediments close to the river mouth. The distributions of brGDGTs in marine SPM and sediments varied widely, but generally showed a higher relative abundance of methylated and cyclic brGDGTs than those in the river. Since this difference in brGDGT distribution was also found in intact polar lipid (IPL)-derived brGDGTs, which were more recently produced, the change in the marine brGDGT distribution was most likely due to marine in situ production. Consequently, the MAATs calculated based on the methylation of branched tetraethers (MBT) and the cyclisation of branched tetraethers (CBT) were lower and the CBT-derived pH values were higher than those of the Amazon basin. However, SPM and sediments from stations close to the river mouth still showed MBT/CBT values that were similar to those of the river. Therefore, we recommend caution when applying the MBT/CBT proxy, it should only be used in sediment cores that were under high river influence. The influence of riverine derived isoprenoid GDGT (isoGDGT) on the isoGDGT-based TEX86 temperature proxy was also examined in marine SPM and sediments. An input of riverine isoGDGTs from the Amazon River was apparent, but its influence on the marine TEX86 was minor since the TEX86 of SPM in the Amazon River was similar to that in the marine SPM and sediments.

Matrix effects on organic pollutants analysis in marine sediment

NASA Astrophysics Data System (ADS)

Azis, M. Y.; Asia, L.; Piram, A.; Buchari, B.; Doumenq, P.; Setiyanto, H.

2018-05-01

Interference from the matrix sample can influence of the accurate analytical method. Accelerated Solvent Extraction and their purification methods were tried to separate the organic micropollutants respectively in marine sediment. Those matrix were as organic pollutants evaluation in marine environment. Polychlorinated Biphenyls (PCBs) and Organochlorine pesticides (OCPs) are two examples organic pollutant in environment which are carcinogenic and mutagenic. Marine sediments are important matrices of information regarding the human activities in coastal areas as well as the fate and behavior of organic pollutants, which are persistent in long-term. This research purpose to evaluate the matrice effect and the recovery from marine sediment spiking with several standar solution and deuterium of molecular target from organic pollutants in not polluted sample of sediment. Matrice samples was tested from indicate in unpolluted location. The methods were evaluated with standard calibration curve (linearity < 0.999, LOQ various ranged 0.5-1000 pg.μL-1 and LOD > LOQ). Recovery (YE) relative, Matrice Effect (ME) relative correction with deuteriated standar were evaluated the interference the matrix. Interference effect for OCPs compounds were higher than PCBs in marine sediment.

High resolution near-bed observations in winter near Cape Hatteras, North Carolina

USGS Publications Warehouse

Martini, Marinna A.; Armstrong, Brandy N.; Warner, John C.

2010-01-01

The U.S. Geological Survey (USGS) Coastal and Marine Science Center in Woods Hole, Massachusetts, is leading an effort to understand the regional sediment dynamics along the coastline of North and South Carolina. As part of the Carolinas Coastal Change Processes Project, a geologic framework study in June of 2008 by the Woods Hole Coastal and Marine Science Center's Sea Floor Mapping Group focused on the seaward limit of Diamond Shoals and provided high resolution bathymetric data, surficial sediment characteristics, and subsurface geologic stratigraphy. These data also provided unprecedented guidance to identify deployment locations for tripods and moorings to investigate the processes that control sediment transport at Diamond Shoals. Equipment was deployed at three sites from early January, 2009 through early May, 2009: north and south of the shoals at 15 m depth, and at the tip at 24 m depth. Many strong storm systems were recorded during that time period. Mounted on the tripods were instruments to measure surface waves, pressure, current velocity, bottom turbulence, suspended-sediment profiles, and sea-floor sand-ripple bedforms. Many instruments were designed and programmed to sample in high resolution in time and space, as fast as 8 Hz hourly bursts and as small as 6 cm bin sizes in near bottom profiles. A second tripod at the north site also held a visual camera system and sonar imaging system which document seafloor bedforms. The region is known for its dynamics, and one of the tripods tipped over towards the end of the experiment. A preliminary look at the data suggests the region is characterized by high energy. Raw data from a burst recorded at the south site on Mar. 26th show instantaneous flow speed at 150 cm/s at 0.5 m above the seabed. This paper reports preliminary highlights of the observations, based on raw data, and lessons learned from a deployment of large tripod systems in such a dynamic location.

High resolution near-bed observations in winter near Cape Hatteras, North Carolina

USGS Publications Warehouse

Martini, M.; Armstrong, B.; Warner, J.C.

2009-01-01

The U.S. Geological Survey (USGS) Coastal and Marine Science Center in Woods Hole, Massachusetts, is leading an effort to understand the regional sediment dynamics along the coastline of North and South Carolina. As part of the Carolinas Coastal Change Processes Project, a geologic framework study in June of 2008 by the Woods Hole Coastal and Marine Science Center's Sea Floor Mapping Group focused on the seaward limit of Diamond Shoals and provided high resolution bathymetric data, surficial sediment characteristics, and subsurface geologic stratigraphy. These data also provided unprecedented guidance to identify deployment locations for tripods and moorings to investigate the processes that control sediment transport at Diamond Shoals. Equipment was deployed at three sites from early January, 2009 through early May, 2009: north and south of the shoals at 15 m depth, and at the tip at 24 m depth. Many strong storm systems were recorded during that time period. Mounted on the tripods were instruments to measure surface waves, pressure, current velocity, bottom turbulence, suspended-sediment profiles, and sea-floor sand-ripple bedforms. Many instruments were designed and programmed to sample in high resolution in time and space, as fast as 8 Hz hourly bursts and as small as 6 cm bin sizes in near bottom profiles. A second tripod at the north site also held a visual camera system and sonar imaging system which document seafloor bedforms. The region is known for its dynamics, and one of the tripods tipped over towards the end of the experiment. A preliminary look at the data suggests the region is characterized by high energy. Raw data from a burst recorded at the south site on Mar. 26th show instantaneous flow speed at 150 cm/s at 0.5 m above the seabed. This paper reports preliminary highlights of the observations, based on raw data, and lessons learned from a deployment of large tripod systems in such a dynamic location. ??2009 MTS.

Turbidite carbon distribution by Ramped PyrOx, Astoria Canyon

NASA Astrophysics Data System (ADS)

Childress, L. B.; Galy, V.; McNichol, A. P.

2017-12-01

The magnitude and nature of carbon preserved in marine sediments can be affected by long-term processes such as climate change and tectonic transport; preservation of carbon can also be affected by short-term, episodic disturbances such as storm events, landslides, and earthquakes. In margins with active canyons, these systems can be efficient burial networks for carbon. The downslope displacement and reorganization of sediment and associated organic carbon (OC) during turbidite formation alters oxygen diffusion and the potential for aerobic oxidation, thereby modifying the redox geochemistry of the sediment package. Generally termed as a `burn-down', reactions at the subsurface oxidation front are linked to a loss of OC preservation within turbidite sequences. Still debated is the source of the OC residual within `burn-down' events, primarily whether the preserved material is dominated by terrestrial or marine components. To better understand the significance of canyon systems and turbidite deposits in the transport, preservation, and `burn-down' of organic carbon, samples from these systems can be studied using the Ramped PyrOx (RPO) technique. Whereas bulk radiocarbon measurements are unsuitable within turbidite deposits, RPO is well suited for characterizing the distribution of carbon sources within a turbidite interval. To complement RPO analyses, OC and N content, stable carbon isotope composition, gamma ray attenuation bulk density, computerized tomography, and magnetic susceptibility were determined. The turbidite systems of the Cascadia Subduction Zone have been extensively studied in relation to the Holocene paleoseismic record. Gravity cores collected in 2011 aboard the R/V Wecoma capture turbidite deposits in Astoria Canyon and demonstrate characteristics of `burn down' intervals. RPO data from within a 15 cm turbidite interval indicate minimal variation in reactivity structure, stable carbon isotope values and radiocarbon age, suggesting a shared source of sediment input. Such similarities imply minimal source-selective OC alteration and are consistent with a singular event (e.g. - flood) associated with late Holocene warm interval influence on the Columbia River Basin.

In situ expression of nifD in Geobacteraceae in subsurface sediments

USGS Publications Warehouse

Holmes, Dawn E.; Nevin, Kelly P.; Lovely, Derek R.

2004-01-01

In order to determine whether the metabolic state of Geobacteraceae involved in bioremediation of subsurface sediments might be inferred from levels of mRNA for key genes, in situ expression of nifD, a highly conserved gene involved in nitrogen fixation, was investigated. When Geobacter sulfurreducens was grown without a source of fixed nitrogen in chemostats with acetate provided as the limiting electron donor and Fe(III) as the electron acceptor, levels of nifD transcripts were 4 to 5 orders of magnitude higher than in chemostat cultures provided with ammonium. In contrast, the number of transcripts of recA and the 16S rRNA gene were slightly lower in the absence of ammonium. The addition of acetate to organic- and nitrogen-poor subsurface sediments stimulated the growth of Geobacteraceae and Fe(III) reduction, as well as the expression of nifD in Geobacteraceae. Levels of nifD transcripts in Geobacteraceae decreased more than 100-fold within 2 days after the addition of 100 μM ammonium, while levels of recA and total bacterial 16S rRNA in Geobacteraceae remained relatively constant. Ammonium amendments had no effect on rates of Fe(III) reduction in acetate-amended sediments or toluene degradation in petroleum-contaminated sediments, suggesting that other factors, such as the rate that Geobacteraceae could access Fe(III) oxides, limited Fe(III) reduction. These results demonstrate that it is possible to monitor one aspect of the in situ metabolic state of Geobacteraceae species in subsurface sediments via analysis of mRNA levels, which is the first step toward a more global analysis of in situ gene expression related to nutrient status and stress response during bioremediation by Geobacteraceae.

Insight into metabolic potential of carbon-poor pelagic sediments derived from the abundance and composition of organic carbon

NASA Astrophysics Data System (ADS)

Estes, E. R.; Hansel, C. M.; Orsi, W. D.; Anderson, C. H.; Murray, R. W.; Wankel, S. D.; Johnson, D.; Nordlund, D.; Spivack, A. J.; Sauvage, J.; McKinley, C. C.; Homola, K.; Present, T. M.; Pockalny, R. A.; D'Hondt, S.

2016-02-01

Pelagic marine sediments are often carbon-limited, with oxic sediments bearing exceedingly small concentrations of metabolizable organic carbon (OC) and anoxic sediments lacking electron acceptors to drive heterotrophy. This OC is typically considered recalcitrant and presumed to be of limited bioavailability as much of it is difficult to characterize molecularly. Here, we utilize a combination of spectrometry, spectroscopy, and fluorescent assays to characterize the OC content and composition of sediment cores from the western subtropical North Atlantic collected during R/V Knorr expedition 223 in November 2014. We find that OC concentrations decrease linearly over 15m burial depth from 0.15 to 0.075 mol OC/kg sediment, beyond which this lower OC level persists to depths approaching 30m. The ratio of organic carbon to nitrogen (C/N) varies but is consistently close to Redfield values of 6. Further, protein concentrations within the suboxic sediments are 1.75 to 4.90 μg protein/mg sediment, values in excess of predicted cell abundance in subsurface sediments. After an initial decrease in concentration between 0-3 meters below core top, protein content increases and stabilizes at 4 μg protein/mg sediment. RNA is detectable throughout the core and profiles (as μg cDNA amplified/g sediment) generally correlate with the shape of protein profiles. Combined, these results imply a small but active microbial community and the potential for these proteins to fuel heterotrophy at depth. Near-edge X-ray absorption fine structure (NEXAFS) spectroscopy finds that amide and carboxyl C functionalities comprise 25% of total spectral area, with the remainder dominated by aromatic C and O-alkyl-C groups. These findings suggest that sedimentary OC contain identifiable components, including a substantial concentration of intact proteins that may fuel heterotrophic microbial communities.

Biological formation of ethane and propane in the deep marine subsurface.

PubMed

Hinrichs, Kai-Uwe; Hayes, John M; Bach, Wolfgang; Spivack, Arthur J; Hmelo, Laura R; Holm, Nils G; Johnson, Carl G; Sylva, Sean P

2006-10-03

Concentrations and isotopic compositions of ethane and propane in cold, deeply buried sediments from the southeastern Pacific are best explained by microbial production of these gases in situ. Reduction of acetate to ethane provides one feasible mechanism. Propane is enriched in (13)C relative to ethane. The amount is consistent with derivation of the third C from inorganic carbon dissolved in sedimentary pore waters. At typical sedimentary conditions, the reactions yield free energy sufficient for growth. Relationships with competing processes are governed mainly by the abundance of H(2). Production of C(2) and C(3) hydrocarbons in this way provides a sink for acetate and hydrogen but upsets the general belief that hydrocarbons larger than methane derive only from thermal degradation of fossil organic material.

Biological formation of ethane and propane in the deep marine subsurface

PubMed Central

Hinrichs, Kai-Uwe; Hayes, John M.; Bach, Wolfgang; Spivack, Arthur J.; Hmelo, Laura R.; Holm, Nils G.; Johnson, Carl G.; Sylva, Sean P.

2006-01-01

Concentrations and isotopic compositions of ethane and propane in cold, deeply buried sediments from the southeastern Pacific are best explained by microbial production of these gases in situ. Reduction of acetate to ethane provides one feasible mechanism. Propane is enriched in 13C relative to ethane. The amount is consistent with derivation of the third C from inorganic carbon dissolved in sedimentary pore waters. At typical sedimentary conditions, the reactions yield free energy sufficient for growth. Relationships with competing processes are governed mainly by the abundance of H2. Production of C2 and C3 hydrocarbons in this way provides a sink for acetate and hydrogen but upsets the general belief that hydrocarbons larger than methane derive only from thermal degradation of fossil organic material. PMID:16990430

Subsurface Salts in Antarctic Dry Valley Soils

NASA Technical Reports Server (NTRS)

Englert, P.; Bishop, J. L.; Gibson, E. K.; Koeberl, C.

2013-01-01

The distribution of water-soluble ions, major and minor elements, and other parameters were examined to determine the extent and effects of chemical weathering on cold desert soils. Patterns at the study sites support theories of multiple salt forming processes, including marine aerosols and chemical weathering of mafic minerals. Periodic solar-mediated ionization of atmospheric nitrogen might also produce high nitrate concentrations found in older sediments. Chemical weathering, however, was the major contributor of salts in Antarctic Dry Valleys. The Antarctic Dry Valleys represent a unique analog for Mars, as they are extremely cold and dry desert environments. Similarities in the climate, surface geology, and chemical properties of the Dry Valleys to that of Mars imply the possible presence of these soil formation mechanisms on Mars, other planets and icy satellites.

Assessment of Density Variations of Marine Sediments with Ocean and Sediment Depths

PubMed Central

Tenzer, R.; Gladkikh, V.

2014-01-01

We analyze the density distribution of marine sediments using density samples taken from 716 drill sites of the Deep Sea Drilling Project (DSDP). The samples taken within the upper stratigraphic layer exhibit a prevailing trend of the decreasing density with the increasing ocean depth (at a rate of −0.05 g/cm3 per 1 km). Our results confirm findings of published studies that the density nonlinearly increases with the increasing sediment depth due to compaction. We further establish a 3D density model of marine sediments and propose theoretical models of the ocean-sediment and sediment-bedrock density contrasts. The sediment density-depth equation approximates density samples with an average uncertainty of about 10% and better represents the density distribution especially at deeper sections of basin sediments than a uniform density model. The analysis of DSDP density data also reveals that the average density of marine sediments is 1.70 g/cm3 and the average density of the ocean bedrock is 2.9 g/cm3. PMID:24744686

Near-surface stratigraphy and morphology, Mississippi Inner Shelf, northern Gulf of Mexico

USGS Publications Warehouse

Flocks, James G.; Kindinger, Jack; Kelso, Kyle W.; Bernier, Julie C.; DeWitt, Nancy T.; FitzHarris, Michael

2015-01-01

In June 2013, as part of the MsCIP project, the USGS conducted a geophysical survey consisting of about 650 line-kilometers (km), encompassing an area of approximately 212 square kilometers (km2). The survey area extended from 1 to 13 km offshore of Petite Bois Island. The geophysical investigation included interferometric swath bathymetry, sidescan sonar, and chirp subbottom profiling. The intent of the survey was to provide geologic information that would assist the USACE in developing a sediment sampling strategy for identifying deposits suitable for shoreline restoration operations. The data from the geophysical survey would also further our understanding of the geologic framework along the inner shelf. Numerous seafloor and subbottom features were identified. At the surface, shoals and shelf sand sheets of various sizes and orientations are the predominant morphology. In the subsurface, Holocene- and Pleistocene-age features include marine transgressive deposits infilling older fluvia distributary systems. These interpretations from the geophysical research were integrated with sediment cores collected by the USGS and USACE to provide textural and volumetric information.

California State Waters Map Series Data Catalog

USGS Publications Warehouse

Golden, Nadine E.

2013-01-01

In 2007, the California Ocean Protection Council initiated the California Seafloor Mapping Program (CSMP), designed to create a comprehensive seafloor map of high-resolution bathymetry, marine benthic habitats, and geology within the 3-nautical-mile limit of California's State Waters. The CSMP approach is to create highly detailed seafloor maps and associated data layers through the collection, integration, interpretation, and visualization of swath sonar data, acoustic backscatter, seafloor video, seafloor photography, high-resolution seismic-reflection profiles, and bottom-sediment sampling data. CSMP has divided coastal California into 110 map blocks (fig. 1), each to be published individually as USGS Scientific Investigations Maps (SIMs) at a scale of 1:24,000. The map products display seafloor morphology and character, identify potential marine benthic habitats, and illustrate both the seafloor geology and shallow (to about 100 m) subsurface geology. This CSMP data catalog contains much of the data used to prepare the SIMs in the California State Waters Map Series. Other data that were used to prepare the maps were compiled from previously published sources (for example, onshore geology) and, thus, are not included herein.

Regional stratigraphic cross sections of Cretaceous rocks from east-central Arizona to the Oklahoma Panhandle

USGS Publications Warehouse

Molenaar, C.M.; Cobban, W.A.; Merewether, E.A.; Pillmore, C.L.; Wolfe, D.G.; Holbrook, J.M.

2002-01-01

Sedimentary rocks of Cretaceous age along Transect DD'' in eastern Arizona, northern New Mexico, southern Colorado, and western Oklahoma consist mainly of sandstone, siltstone, shale, limestone, and bentonite. They accumulated as sediments in continental, nearshore marine, and offshore marine environments on the west side of a north-trending epicontinental sea. The rocks record intermittent deposition and erosion as well as regional and local subsidence and uplift possibly beginning in Aptian time (about 121-112 Ma) and occurring in Albian through Maastrichtian time (about 112-65.4 Ma). Most of the Lower Cretaceous (Berriasian through Aptian, 142-112 Ma) in this transect is represented by a basal unconformity. The Cretaceous rocks and unconformities along the transect are depicted on the attached lithostratigraphic cross sections (sheets 1 and 2); one extending from the Mogollon Rim in eastern Arizona to Pagosa Springs in southwestern Colorado and the other from Pagosa Springs, Colorado, to Kenton in western Oklahoma. The same rocks and unconformities are also represented on the attached chronostratigraphic profile (sheet 3), which was prepared mainly from surface and subsurface data shown on the lithostratigraphic cross sections.

DISSOLVED-COLLOIDAL PARTITIONING OF MOBILIZED METALS DURING RESUSPENSION OF MARINE SEDIMENTS

EPA Science Inventory

Sediments in many urban estuaries are contaminated by potentially toxic heavy metals. Over time, many of these metals accumulate in the sediment due to physico-chemical processes which remove them from the water column. Marine sediments are regularly subjected to physical process...

Environmental process descriptors for TNT, TNT-related compounds and picric acid in marine sediment slurries.

PubMed

Yost, Sally L; Pennington, Judith C; Brannon, James M; Hayes, Charolett A

2007-08-01

Process descriptors were determined for picric acid, TNT, and the TNT-related compounds 2,4DNT, 2,6DNT, 2ADNT, 4ADNT, 2,4DANT, 2,6DANT, TNB and DNB in marine sediment slurries. Three marine sediments of various physical characteristics (particle size ranging from 15 to >90% fines and total organic carbon ranging from <0.10 to 3.60%) were kept in suspension with 20ppt saline water. Concentrations of TNT and its related compounds decreased immediately upon contact with the marine sediment slurries, with aqueous concentrations slowly declining throughout the remaining test period. Sediment-water partition coefficients could not be determined for these compounds since solution phase concentrations were unstable. Kinetic rates and half-lives were influenced by the sediment properties, with the finer grained, higher organic carbon sediment being the most reactive. Aqueous concentrations of picric acid were very stable, demonstrating little partitioning to the sediments. Degradation to picramic acid was minimal, exhibiting concentrations at or just above the detection limit.

Fe(III) reduction and U(VI) immobilization by Paenibacillus sp. strain 300A, isolated from Hanford 300A subsurface sediments.

PubMed

Ahmed, Bulbul; Cao, Bin; McLean, Jeffrey S; Ica, Tuba; Dohnalkova, Alice; Istanbullu, Ozlem; Paksoy, Akin; Fredrickson, Jim K; Beyenal, Haluk

2012-11-01

A facultative iron-reducing [Fe(III)-reducing] Paenibacillus sp. strain was isolated from Hanford 300A subsurface sediment biofilms that was capable of reducing soluble Fe(III) complexes [Fe(III)-nitrilotriacetic acid and Fe(III)-citrate] but unable to reduce poorly crystalline ferrihydrite (Fh). However, Paenibacillus sp. 300A was capable of reducing Fh in the presence of low concentrations (2 μM) of either of the electron transfer mediators (ETMs) flavin mononucleotide (FMN) or anthraquinone-2,6-disulfonate (AQDS). Maximum initial Fh reduction rates were observed at catalytic concentrations (<10 μM) of either FMN or AQDS. Higher FMN concentrations inhibited Fh reduction, while increased AQDS concentrations did not. We also found that Paenibacillus sp. 300A could reduce Fh in the presence of natural ETMs from Hanford 300A subsurface sediments. In the absence of ETMs, Paenibacillus sp. 300A was capable of immobilizing U(VI) through both reduction and adsorption. The relative contributions of adsorption and microbial reduction to U(VI) removal from the aqueous phase were ∼7:3 in PIPES [piperazine-N,N'-bis(2-ethanesulfonic acid)] and ∼1:4 in bicarbonate buffer. Our study demonstrated that Paenibacillus sp. 300A catalyzes Fe(III) reduction and U(VI) immobilization and that these reactions benefit from externally added or naturally existing ETMs in 300A subsurface sediments.

Fe(III) Reduction and U(VI) Immobilization by Paenibacillus sp. Strain 300A, Isolated from Hanford 300A Subsurface Sediments

PubMed Central

Ahmed, Bulbul; Cao, Bin; McLean, Jeffrey S.; Ica, Tuba; Dohnalkova, Alice; Istanbullu, Ozlem; Paksoy, Akin; Fredrickson, Jim K.

2012-01-01

A facultative iron-reducing [Fe(III)-reducing] Paenibacillus sp. strain was isolated from Hanford 300A subsurface sediment biofilms that was capable of reducing soluble Fe(III) complexes [Fe(III)-nitrilotriacetic acid and Fe(III)-citrate] but unable to reduce poorly crystalline ferrihydrite (Fh). However, Paenibacillus sp. 300A was capable of reducing Fh in the presence of low concentrations (2 μM) of either of the electron transfer mediators (ETMs) flavin mononucleotide (FMN) or anthraquinone-2,6-disulfonate (AQDS). Maximum initial Fh reduction rates were observed at catalytic concentrations (<10 μM) of either FMN or AQDS. Higher FMN concentrations inhibited Fh reduction, while increased AQDS concentrations did not. We also found that Paenibacillus sp. 300A could reduce Fh in the presence of natural ETMs from Hanford 300A subsurface sediments. In the absence of ETMs, Paenibacillus sp. 300A was capable of immobilizing U(VI) through both reduction and adsorption. The relative contributions of adsorption and microbial reduction to U(VI) removal from the aqueous phase were ∼7:3 in PIPES [piperazine-N,N′-bis(2-ethanesulfonic acid)] and ∼1:4 in bicarbonate buffer. Our study demonstrated that Paenibacillus sp. 300A catalyzes Fe(III) reduction and U(VI) immobilization and that these reactions benefit from externally added or naturally existing ETMs in 300A subsurface sediments. PMID:22961903

Fe(III) Reduction and U(VI) Immobilization by Paenibacillus sp. Strain 300A, Isolated from Hanford 300A Subsurface Sediments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ahmed, B.; Cao, B.; McLean, Jeffrey S.

2012-11-07

A facultative iron-reducing (Fe(III)-reducing) Paenibacillus sp. strain was isolated from Hanford 300A subsurface sediment biofilms that was capable of reducing soluble Fe(III) complexes (Fe(III)-NTA and Fe(III)-citrate) but unable to reduce poorly crystalline ferrihydrite (Fh). However, Paenibacillus sp. 300A was capable of reducing Fh in the presence of low concentrations (2 µM) of either of electron transfer mediators (ETMs) flavin mononucleotide (FMN) or anthraquinone-2,6-disulfonate (AQDS). Maximum initial Fh reduction rates were observed at catalytic concentrations (<10 µM) of either FMN or AQDS. Higher FMN concentrations inhibited Fh reduction, while increased AQDS concentrations did not. We found that Paenibacillus sp. 300A alsomore » could reduce Fh in the presence of natural ETMs from Hanford 300A subsurface sediments. In the absence of ETMs, Paenibacillus sp. 300A was capable of immobilizing U(VI) through both reduction and adsorption. The relative contributions of adsorption and microbial reduction to U(VI) removal from the aqueous phase were ~7:3 in PIPES and ~1:4 in bicarbonate buffer. Our study demonstrated that Paenibacillus sp. 300A catalyzes Fe(III) reduction and U(VI) immobilization and that these reactions benefit from externally added or naturally existing ETMs in 300A subsurface sediments.« less

Genomic comparisons of a bacterial lineage that inhabits both marine and terrestrial deep subsurface systems

DOE PAGES

Jungbluth, Sean P.; Glavina del Rio, Tijana; Tringe, Susannah G.; ...

2017-04-06

It is generally accepted that diverse, poorly characterized microorganisms reside deep within Earth’s crust. One such lineage of deep subsurface-dwelling bacteria is an uncultivated member of the Firmicutes phylum that can dominate molecular surveys from both marine and continental rock fracture fluids, sometimes forming the sole member of a single-species microbiome. Here, we reconstructed a genome from basalt-hosted fluids of the deep subseafloor along the eastern Juan de Fuca Ridge flank and used a phylogenomic analysis to show that, despite vast differences in geographic origin and habitat, it forms a monophyletic clade with the terrestrial deep subsurface genome of “more » Candidatus Desulforudis audaxviator” MP104C. While a limited number of differences were observed between the marine genome of “ Candidatus Desulfopertinax cowenii” modA32 and its terrestrial relative that may be of potential adaptive importance, here it is revealed that the two are remarkably similar thermophiles possessing the genetic capacity for motility, sporulation, hydrogenotrophy, chemoorganotrophy, dissimilatory sulfate reduction, and the ability to fix inorganic carbon via the Wood-Ljungdahl pathway for chemoautotrophic growth. Finally, our results provide insights into the genetic repertoire within marine and terrestrial members of a bacterial lineage that is widespread in the global deep subsurface biosphere, and provides a natural means to investigate adaptations specific to these two environments.« less

Genomic comparisons of a bacterial lineage that inhabits both marine and terrestrial deep subsurface systems

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jungbluth, Sean P.; Glavina del Rio, Tijana; Tringe, Susannah G.

It is generally accepted that diverse, poorly characterized microorganisms reside deep within Earth’s crust. One such lineage of deep subsurface-dwelling bacteria is an uncultivated member of the Firmicutes phylum that can dominate molecular surveys from both marine and continental rock fracture fluids, sometimes forming the sole member of a single-species microbiome. Here, we reconstructed a genome from basalt-hosted fluids of the deep subseafloor along the eastern Juan de Fuca Ridge flank and used a phylogenomic analysis to show that, despite vast differences in geographic origin and habitat, it forms a monophyletic clade with the terrestrial deep subsurface genome of “more » Candidatus Desulforudis audaxviator” MP104C. While a limited number of differences were observed between the marine genome of “ Candidatus Desulfopertinax cowenii” modA32 and its terrestrial relative that may be of potential adaptive importance, here it is revealed that the two are remarkably similar thermophiles possessing the genetic capacity for motility, sporulation, hydrogenotrophy, chemoorganotrophy, dissimilatory sulfate reduction, and the ability to fix inorganic carbon via the Wood-Ljungdahl pathway for chemoautotrophic growth. Finally, our results provide insights into the genetic repertoire within marine and terrestrial members of a bacterial lineage that is widespread in the global deep subsurface biosphere, and provides a natural means to investigate adaptations specific to these two environments.« less

Genomic comparisons of a bacterial lineage that inhabits both marine and terrestrial deep subsurface systems

PubMed Central

Glavina del Rio, Tijana; Tringe, Susannah G.; Stepanauskas, Ramunas

2017-01-01

It is generally accepted that diverse, poorly characterized microorganisms reside deep within Earth’s crust. One such lineage of deep subsurface-dwelling bacteria is an uncultivated member of the Firmicutes phylum that can dominate molecular surveys from both marine and continental rock fracture fluids, sometimes forming the sole member of a single-species microbiome. Here, we reconstructed a genome from basalt-hosted fluids of the deep subseafloor along the eastern Juan de Fuca Ridge flank and used a phylogenomic analysis to show that, despite vast differences in geographic origin and habitat, it forms a monophyletic clade with the terrestrial deep subsurface genome of “Candidatus Desulforudis audaxviator” MP104C. While a limited number of differences were observed between the marine genome of “Candidatus Desulfopertinax cowenii” modA32 and its terrestrial relative that may be of potential adaptive importance, here it is revealed that the two are remarkably similar thermophiles possessing the genetic capacity for motility, sporulation, hydrogenotrophy, chemoorganotrophy, dissimilatory sulfate reduction, and the ability to fix inorganic carbon via the Wood-Ljungdahl pathway for chemoautotrophic growth. Our results provide insights into the genetic repertoire within marine and terrestrial members of a bacterial lineage that is widespread in the global deep subsurface biosphere, and provides a natural means to investigate adaptations specific to these two environments. PMID:28396823

Sediment Resuspension by Ship Traffic in Newark Bay, New Jersey

DTIC Science & Technology

2015-04-01

increased turbidity and sediment deposition on corals (Bermuda). Bulletin of Marine Science 87(3):659- 679. Kelderman, P., D. B . Kassie, M . Bijlsma, L. C...in the coastal marine environment. Marine Ecology Progress Series 315:13-18. Maa, J. P.-Y., and B . Chadwick . 2007. Estimation of annual average... B . Ward, B . Boyd, W. Murphy.R. Nolen-Hoeksema, M . Art, and D. A. Rosales. 2011a. Sediment, sedimentation, and environments of the lower Hackensack

Use of sediment source fingerprinting to assess the role of subsurface erosion in the supply of fine sediment in a degraded catchment in the Eastern Cape, South Africa.

PubMed

Manjoro, Munyaradzi; Rowntree, Kate; Kakembo, Vincent; Foster, Ian; Collins, Adrian L

2017-06-01

Sediment source fingerprinting has been successfully deployed to provide information on the surface and subsurface sources of sediment in many catchments around the world. However, there is still scope to re-examine some of the major assumptions of the technique with reference to the number of fingerprint properties used in the model, the number of model iterations and the potential uncertainties of using more than one sediment core collected from the same floodplain sink. We investigated the role of subsurface erosion in the supply of fine sediment to two sediment cores collected from a floodplain in a small degraded catchment in the Eastern Cape, South Africa. The results showed that increasing the number of individual fingerprint properties in the composite signature did not improve the model goodness-of-fit. This is still a much debated issue in sediment source fingerprinting. To test the goodness-of-fit further, the number of model repeat iterations was increased from 5000 to 30,000. However, this did not reduce uncertainty ranges in modelled source proportions nor improve the model goodness-of-fit. The estimated sediment source contributions were not consistent with the available published data on erosion processes in the study catchment. The temporal pattern of sediment source contributions predicted for the two sediment cores was very different despite the cores being collected in close proximity from the same floodplain. This highlights some of the potential limitations associated with using floodplain cores to reconstruct catchment erosion processes and associated sediment source contributions. For the source tracing approach in general, the findings here suggest the need for further investigations into uncertainties related to the number of fingerprint properties included in un-mixing models. The findings support the current widespread use of ≤5000 model repeat iterations for estimating the key sources of sediment samples. Copyright © 2016 Elsevier Ltd. All rights reserved.

New procedure for recovering extra- and intracellular DNA from marine sediment samples

NASA Astrophysics Data System (ADS)

Alawi, M.; Kallmeyer, J.

2012-12-01

Extracellular DNA (eDNA) is a ubiquitous biological compound in aquatic sediment and soil. Despite major methodological advances, analysis of DNA from sediment is still technically challenging, not just because of the co-elution of inhibitory substances, but also due to co-elution of extracellular DNA, which potentially leads to an overestimate of the actual diversity. Previous studies suggested that eDNA might play an important role in biogeochemical element cycling, horizontal gene transfer and stabilization of biofilm structures. Several protocols based on the precipitation of eDNA e.g. with CTAB and ethanol have already been published. However, using these methods we did not succeed in quantifying very low amounts of eDNA (e.g. <1μg eDNA/g dry wt) in marine sediment even when using DNA carriers like glycogen. Since the recovery of eDNA by precipitation strongly depends on its concentration, these previously published procedures are not adequate for deep biosphere sediment due to the low eDNA content. We have focused on the question whether eDNA could be a source of nitrogen and phosphorus for microbes in the subseafloor biosphere. Therefore we developed a new method for the (semi)-quantitative extraction of eDNA from sediment. The new extraction procedure is based on sequential washing of the sediment to remove simultaneously eDNA and microbial cells without lysing them. After separation of the cells by centrifugation, the eDNA was extracted from the supernatant and purified by adsorption onto a solid phase, followed by removal of the solids and subsequent elution of the pure eDNA. Intracellular DNA (iDNA) was extracted and purified from the cell pellet using a commercial DNA extraction kit. Additional to a very low detection limit and reproducible quantification, this new method allows separation and purification of both extracellular and intracellular DNA to an extent that inhibitors are removed and downstream applications like PCR can be performed. To evaluate the new extraction method two sediments with rather opposing composition were analyzed. Sediment from the South Pacific Gyre, the most oligotrophic oceanic region on earth and organic-rich Baltic Sea sediment (Northern Germany) were processed. Using this new procedure high purity genomic iDNA and eDNA with a molecular size range between 20 bp and 50k bp can be simultaneously recovered even from very oligotrophic sediment with very low cell abundances. The main fraction of recovered eDNA was suitable for downstream applications like PCR and had a molecular size that indicates minimal shearing. Despite about two decades of research many questions about deep subsurface life remain unanswered. The fact that microbes can be found even in deep oligotrophic marine sediment raises the fundamental questions of the types and availability of substrates and their biogeochemical cycling. This is the first study that provides evidence that eDNA is an important potential substrate for microorganisms in the deep biosphere. Also, our results show a link between cell counts and eDNA content, indicating that the eDNA pool in the investigated sediment consist mainly of microbial DNA. Comparative sequence analysis of extracted iDNA and eDNA will provide deeper insights into the origin and turnover of eDNA and the apparent microbial community composition in the deep biosphere.

In situ time-series measurements of subseafloor sediment properties

USGS Publications Warehouse

Wheatcroft, R.A.; Stevens, A.W.; Johnson, R.V.

2007-01-01

The capabilities and diversity of subsurface sediment sensors lags significantly from what is available for the water column, thereby limiting progress in understanding time-dependent seabed exchange and high-frequency acoustics. To help redress this imbalance, a new instrument, the autonomous sediment profiler (ASP), is described herein. ASP consists of a four-electrode, Wenner-type resistivity probe and a thermistor that log data at 0.1-cm vertical intervals over a 58-cm vertical profile. To avoid resampling the same spot on the seafloor, the probes are moved horizontally within a 20 times 100-cm-2 area in one of three preselected patterns. Memory and power capacities permit sampling at hourly intervals for up to 3-mo duration. The system was tested in a laboratory tank and shown to be able to resolve high-frequency sediment consolidation, as well as changes in sediment roughness. In a field test off the southern coast of France, the system collected resistivity and temperature data at hourly intervals for 16 d. Coupled with environmental data collected on waves, currents, and suspended sediment, the ASP is shown to be useful for understanding temporal evolution of subsurface sediment porosity, although no large depositional or erosional events occurred during the deployment. Following a rapid decrease in bottom-water temperature, the evolution of the subsurface temperature field was consistent with the 1-D thermal diffusion equation coupled with advection in the upper 3-4 cm. Collectively, the laboratory and field tests yielded promising results on time-dependent seabed change.

The impact of catchment source group classification on the accuracy of sediment fingerprinting outputs.

PubMed

Pulley, Simon; Foster, Ian; Collins, Adrian L

2017-06-01

The objective classification of sediment source groups is at present an under-investigated aspect of source tracing studies, which has the potential to statistically improve discrimination between sediment sources and reduce uncertainty. This paper investigates this potential using three different source group classification schemes. The first classification scheme was simple surface and subsurface groupings (Scheme 1). The tracer signatures were then used in a two-step cluster analysis to identify the sediment source groupings naturally defined by the tracer signatures (Scheme 2). The cluster source groups were then modified by splitting each one into a surface and subsurface component to suit catchment management goals (Scheme 3). The schemes were tested using artificial mixtures of sediment source samples. Controlled corruptions were made to some of the mixtures to mimic the potential causes of tracer non-conservatism present when using tracers in natural fluvial environments. It was determined how accurately the known proportions of sediment sources in the mixtures were identified after unmixing modelling using the three classification schemes. The cluster analysis derived source groups (2) significantly increased tracer variability ratios (inter-/intra-source group variability) (up to 2122%, median 194%) compared to the surface and subsurface groupings (1). As a result, the composition of the artificial mixtures was identified an average of 9.8% more accurately on the 0-100% contribution scale. It was found that the cluster groups could be reclassified into a surface and subsurface component (3) with no significant increase in composite uncertainty (a 0.1% increase over Scheme 2). The far smaller effects of simulated tracer non-conservatism for the cluster analysis based schemes (2 and 3) was primarily attributed to the increased inter-group variability producing a far larger sediment source signal that the non-conservatism noise (1). Modified cluster analysis based classification methods have the potential to reduce composite uncertainty significantly in future source tracing studies. Copyright © 2016 Elsevier Ltd. All rights reserved.

A TOXICITY IDENTIFICATION EVALUATION OF SILTY MARINE HARBOR SEDIMENTS TO CHARACTERIZE PERSISTENT AND NON-PERSISTENT CONSTITUENTS

EPA Science Inventory

Sediment toxicity in silty marine harbor sediments is frequently dominated by ammonia or sulfide, leaving the adverse effects of persistent toxic substances unnoticed. To investigate the latter, we subjected interstitial water from three contaminated silty sediments to toxicity i...

Experimental validation of a sub-surface model of solar power for distributed marine sensor systems

NASA Astrophysics Data System (ADS)

Hahn, Gregory G.; Cantin, Heather P.; Shafer, Michael W.

2016-04-01

The capabilities of distributed sensor systems such as marine wildlife telemetry tags could be significantly enhanced through the integration of photovoltaic modules. Photovoltaic cells could be used to supplement the primary batteries for wildlife telemetry tags to allow for extended tag deployments, wherein larger amounts of data could be collected and transmitted in near real time. In this article, we present experimental results used to validate and improve key aspects of our original model for sub-surface solar power. We discuss the test methods and results, comparing analytic predictions to experimental results. In a previous work, we introduced a model for sub-surface solar power that used analytic models and empirical data to predict the solar irradiance available for harvest at any depth under the ocean's surface over the course of a year. This model presented underwater photovoltaic transduction as a viable means of supplementing energy for marine wildlife telemetry tags. The additional data provided by improvements in daily energy budgets would enhance the temporal and spatial comprehension of the host's activities and/or environments. Photovoltaic transduction is one method that has not been widely deployed in the sub-surface marine environments despite widespread use on terrestrial and avian species wildlife tag systems. Until now, the use of photovoltaic cells for underwater energy harvesting has generally been disregarded as a viable energy source in this arena. In addition to marine telemetry systems, photovoltaic energy harvesting systems could also serve as a means of energy supply for autonomous underwater vehicles (AUVs), as well as submersible buoys for oceanographic data collection.

Preservation of high primary porosity in Paleozoic crinoidal and bioclastic grainstones: Mississippian and Permian subsurface examples from western Canada and Texas

DOE Office of Scientific and Technical Information (OSTI.GOV)

Eby, D.E.; Kirkby, K.C.

1991-03-01

Limestone reservoirs with anomalously high porosity and permeability exist in several Paleozoic basinal settings in western North America. They are commonly either crinoidal or bioclastic grainstones that escaped the varied diagenetic environments that most carbonate shelves and slopes experience during sea-level fluctuations. Thus, these diagenetically 'conservative' settings can preserve most of the primary depositional porosity in calcarenites because of sedimentation and burial within normal marine basinal waters. These excellent reservoirs are often encased in deep marine, highly organic shales which may serve as both source rock and seal. Several subsurface examples of remarkable primary porosity occur within Mississippian Waulsortian buildupsmore » of western Canada and north-center Texas. Buildups within the Pekisko Formation of Alberta, for instance, contain abundant flanking crinoidal/bryozoan grainstones with up to 25% primary porosity and 10 d permeability. Muddy core facies with productive flank and capping calcarenites are up to 300 ft (90 m) thick and 600-1,200 ft (182-364 m) in diameter. The Bowar 'reef complex' in the Chappel Formation of Stephens County, Texas (2.6 MMBO to date) is similar in many respects to the Canadian buildups. Diagenetic 'conservatism' has also promoted excellent reservoir quality within the outer slope to basinal lower Permian bioclastic grain-flow deposit ('Wolfcamp detrital') plays of the eastern Midland basin where significant diagenesis was arrested after basinal deposition. Interpretations of these examples based upon core and outcrop control provide analogs for future exploration and exploitation in highly porous basinal carbonate reservoirs.« less

Geophysical characterization of areas prone to quick-clay landslides using radio-magnetotelluric and seismic methods

NASA Astrophysics Data System (ADS)

Wang, Shunguo; Malehmir, Alireza; Bastani, Mehrdad

2016-05-01

Landslides attributed to quick clays have not only considerable influences on surface geomorphology, they have caused delays in transportation systems, environmental problems and human fatalities, especially in Scandinavia and North America. If the subsurface distributions of quick clays are known, potential damages can be mitigated and the triggers of landslides can better be studied and understood. For this purpose, new radio-magnetotelluric (RMT) and seismic data were acquired in an area near the Göta River in southwest Sweden that contains quick clays and associated landslides. High-resolution data along 4 new lines, in total 3.8 km long, were acquired and merged with earlier acquired data from the site. Velocity and resistivity models derived from first breaks and RMT data were used to delineate subsurface geology, in particular the bedrock surface and coarse-grained materials that overlay the bedrock. The latter often are found underlying quick clays at the site. Comparably high-resistivity and sometimes high-velocity regions within marine clays are attributed to a combination of leached salt from marine clays or potential quick clays and coarse-grained materials. The resistivity and tomographic velocity models suggest a much larger role of the coarse-grained materials at the site than previously thought, but they also suggest two different scenarios for triggering quick-clay landslides at the site. These scenarios are related to the erosion of the riverbank, increased pore-pressure and surface topography when close to the river and human activity when away from the river and where bowl-shaped bedrock surrounds the sediments.

Anaerobic consortia of fungi and sulfate reducing bacteria in deep granite fractures.

PubMed

Drake, Henrik; Ivarsson, Magnus; Bengtson, Stefan; Heim, Christine; Siljeström, Sandra; Whitehouse, Martin J; Broman, Curt; Belivanova, Veneta; Åström, Mats E

2017-07-04

The deep biosphere is one of the least understood ecosystems on Earth. Although most microbiological studies in this system have focused on prokaryotes and neglected microeukaryotes, recent discoveries have revealed existence of fossil and active fungi in marine sediments and sub-seafloor basalts, with proposed importance for the subsurface energy cycle. However, studies of fungi in deep continental crystalline rocks are surprisingly few. Consequently, the characteristics and processes of fungi and fungus-prokaryote interactions in this vast environment remain enigmatic. Here we report the first findings of partly organically preserved and partly mineralized fungi at great depth in fractured crystalline rock (-740 m). Based on environmental parameters and mineralogy the fungi are interpreted as anaerobic. Synchrotron-based techniques and stable isotope microanalysis confirm a coupling between the fungi and sulfate reducing bacteria. The cryptoendolithic fungi have significantly weathered neighboring zeolite crystals and thus have implications for storage of toxic wastes using zeolite barriers.Deep subsurface microorganisms play an important role in nutrient cycling, yet little is known about deep continental fungal communities. Here, the authors show organically preserved and partly mineralized fungi at 740 m depth, and find evidence of an anaerobic fungi and sulfate reducing bacteria consortium.

Stable carbon isotope ratios of archaeal GDGTs in the marine water column and surface sediments

NASA Astrophysics Data System (ADS)

Pearson, A.; Hurley, S.; Close, H. G.; Jasper, C. E.

2016-12-01

Archaeal glycerol dibiphytanyl glycerol tetraether (GDGT) lipids are ubiquitous throughout the marine environment and are preserved in sediments and sedimentary rocks on million-year timescales. Variations in the number of ring-containing GDGT isomers in sediments correlate with differences in overlying sea surface temperatures, a relationship formalized in the TEX86 paleotemperature proxy. Ammonia-oxidizing Thaumarchaeota are believed to be the major sources of these GDGTs, implying that the greatest production and export of GDGTs from the water column should be associated with the maximum expression of ammonia monooxygenase (amoA) genes and maximum number of thaumarchaeal cells, both of which occur in the subsurface NO2- maximum near a depth of ca. 80-250 m. To examine the relationship between production and export of GDGTs from the water column, we measured the concentrations and δ13C values of GDGTs in suspended particulate matter (SPM) of the western South Atlantic Ocean and compared them to values from pure thaumarchaeal cultures and from available sediment core-tops from other locations. Thaumarchaeota are believed to fix the majority of their carbon directly from dissolved inorganic carbon (DIC). However, both the SPM and core-top δ13C values in some cases are moderately more 13C-depleted than would be predicted based on the 13C content of local DIC and the previously-published biosynthetic isotope fractionation (ɛ). This indicates that the average metabolism of the planktonic archaeal community either is mixotrophic (≥ 25% organic carbon assimilation) or that the published ɛ value for the model organism Nitrosopumilus maritimus may not be representative of the total autotrophic community. In addition to this offset, δ13C values of GDGTs in SPM inversely mirror DIC profiles, with lowest values in the nitrite maximum and higher values in the deeper water column, similar to the overall trends for bulk SPM. Finally, while individual GDGTs in SPM samples have similar δ13C values, in many sediments measured to date, the isotopic composition of individual GDGTs differs. This implies that multiple sources of GDGTs are required to explain core-top 13C distributions, especially on continental margins.

Transport of branched tetraether lipids from the Tagus River basin to the coastal ocean of the Portuguese margin: Consequences for the interpretation of the MBT'/CBT paleothermometer

NASA Astrophysics Data System (ADS)

Zell, Claudia; Kim, Jung-Hyun; Balinsha, Maria; Dorhout, Denise; Santos Fernandez, Cten; Baas, Marianne; Sinninghe Damsté, Jaap S.

2014-05-01

Branched glycerol dialkyl glycerol tetraethers (brGDGTs), which are transported from soil to marine sediment by rivers, have been used to reconstruct the mean annual air temperature(MAAT) and soil pH of the drainage basin using the methylation index of branched tetraethers(MBT, recently refined as MBT') and cyclization index of branched tetraethers (CBT) from coastal marine sediment records. In this study we are tracing the brGDGTs from source to sink in the Tagus River basin, the longest river system on the Iberian Peninsula, by determining their concentration and distribution in soils, river suspended particulate matter (SPM), riverbank sediments, marine SPM, and marine surface sediments. The concentrations of brGDGTs in river SPM were substantially higher and their distributions were different compared to those of the drainage basin soils. This indicates that brGDGTs are mainly produced in the river itself. In the marine environment, the brGDGT concentrations rapidly decreased with increasing distance from the Tagus estuary. At the same time, the brGDGT distributions in marine sediments also changed,indicating that marine in-situ production also takes place. These results show that there are various problems that complicate the use of the MBT'/CBT for paleoreconstructions using coastal marine sediments in the vicinity of a river. However, if the majority of brGDGTs are produced in the river, it might be possible to reconstruct the environmental (temperature and pH) conditions of the river water using appropriate aquatic calibrations, provided that marine core locations are chosen in such a way that the brGDGTs in their sediments are predominantly derived from riverine in-situ production.

Transport of branched tetraether lipids from the Tagus River basin to the coastal ocean of the Portuguese margin: consequences for the interpretation of the MBT'/CBT paleothermometer

NASA Astrophysics Data System (ADS)

Zell, C.; Kim, J.-H.; Balsinha, M.; Dorhout, D.; Fernandes, C.; Baas, M.; Sinninghe Damsté, J. S.

2014-03-01

Branched glycerol dialkyl glycerol tetraethers (brGDGTs), which are transported from soil to marine sediment by rivers, have been used to reconstruct the mean annual air temperature (MAAT) and soil pH of the drainage basin using the methylation index of branched tetraethers (MBT, recently refined as MBT') and cyclization index of branched tetraethers (CBT) from coastal marine sediment records. In this study we are tracing the brGDGTs from source to sink in the Tagus River basin, the longest river system on the Iberian Peninsula, by determining their concentration and distribution in soils, river suspended particulate matter (SPM), riverbank sediments, marine SPM, and marine surface sediments. The concentrations of brGDGTs in river SPM were substantially higher and their distributions were different compared to those of the drainage basin soils. This indicates that brGDGTs are mainly produced in the river itself. In the marine environment, the brGDGT concentrations rapidly decreased with increasing distance from the Tagus estuary. At the same time, the brGDGT distributions in marine sediments also changed, indicating that marine in-situ production also takes place. These results show that there are various problems that complicate the use of the MBT'/CBT for paleoreconstructions using coastal marine sediments in the vicinity of a river. However, if the majority of brGDGTs are produced in the river, it might be possible to reconstruct the environmental (temperature and pH) conditions of the river water using appropriate aquatic calibrations, provided that marine core locations are chosen in such a way that the brGDGTs in their sediments are predominantly derived from riverine in-situ production.

Transport of branched tetraether lipids from the Tagus River basin to the coastal ocean of the Portuguese margin: consequences for the interpretation of the MBT'/CBT paleothermometer

NASA Astrophysics Data System (ADS)

Zell, C.; Kim, J.-H.; Balsinha, M.; Dorhout, D.; Fernandes, C.; Baas, M.; Sinninghe Damsté, J. S.

2014-10-01

Branched glycerol dialkyl glycerol tetraethers (brGDGTs), which are thought to be transported from soil to marine sediment by rivers, have been used to reconstruct the mean annual air temperature (MAAT) and soil pH of the drainage basin using the methylation index of branched tetraethers (MBT, recently refined as MBT') and cyclization index of branched tetraethers (CBT) from coastal marine sediment records. In this study, we trace the brGDGTs from source to sink in the Tagus River basin, the longest river system on the Iberian Peninsula, by determining their concentration and distribution in soils, river suspended particulate matter (SPM), riverbank sediments, marine SPM, and marine surface sediments. The concentrations of brGDGTs in river SPM were substantially higher and their distributions were different compared to those of the drainage basin soils. This indicates that brGDGTs are mainly produced in the river itself. In the marine environment, the brGDGT concentrations rapidly decreased with increasing distance from the Tagus estuary. At the same time, the brGDGT distributions in marine sediments also changed, indicating that marine in situ production also takes place. These results show that there are various problems that complicate the use of the MBT'/CBT for paleoreconstructions using coastal marine sediments in the vicinity of a river. However, if the majority of brGDGTs are produced in the river, it might be possible to reconstruct the environmental (temperature and pH) conditions of the river water using appropriate aquatic calibrations, provided that marine core locations are chosen in such a way that the brGDGTs in their sediments are predominantly derived from riverine in situ production.

Stratigraphy of Atlantic coastal margin of United States north of Cape Hatteras; brief survey

USGS Publications Warehouse

Perry, W.J.; Minard, J.P.; Weed, E.G.A.; Robbins, E.I.; Rhodehamel, E.C.

1975-01-01

A synthesis of studies of sea-floor outcrops of the sedimentary wedge beneath the northeastern United States continental shelf and slope and a reassessment of coastal plain Mesozoic stratigraphy, particularly of the coastal margin, provide insight for estimating the oil and gas potential and provide geologic control for marine seismic investigations of the Atlantic continental margin. The oldest strata known to crop out on the continental slope are late Campanian in age. The Cretaceous-Tertiary contact along the slope ranges from a water depth of 0.6 to 1.5 km south of Georges Bank to 1.8 km in Hudson Canyon. Few samples are available from Tertiary and Late Cretaceous outcrops along the slope. Sediments of the Potomac Group, chiefly of Early Cretaceous age, constitute a major deltaic sequence in the emerged coastal plain. This thick sequence lies under coastal Virginia, Maryland, Delaware, southeastern New Jersey, and the adjacent continental shelf. Marine sands associated with this deltaic sequence may be present seaward under the outer continental shelf. South of the Norfolk arch, under coastal North Carolina, carbonate rocks interfinger with Lower Cretaceous clastic strata. From all available data, Mesozoic correlations in coastal wells between coastal Virginia and Long Island have been revised. The Upper-Lower Cretaceous boundary is placed at the transition between Albian and Cenomanian floras. Potential hydrocarbon source beds are present along the coast in the subsurface sediments of Cretaceous age. Potential reservoir sandstones are abundant in this sequence.

Ecology, physiology, and phylogeny of deep subsurface Sphingomonas sp.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fredrickson, Jim K.; Balkwill, David L.; Romine, Margaret F.

Several new species of the genus Sphingomonas including S. aromaticivorans, S. stygia, and S. subterranea that have the capacity for degrading a broad range of aromatic compounds including toluene, naphthalene, xylenes, p-cresol, fluorene, biphenyl, and dibenzothiophene, were isolated from deeply-buried (>200 m) sediments of the US Atlantic coastal plain (ACP). In S. aromaticivorans F199, many of the genes involved in the catabolism of these aromatic compounds are encoded on a 184-kb conjugative plasmid; some of the genes involved in aromatic catabolism are plasmid-encoded in the other strains as well. Members of the genus Sphingomonas were common among aerobic heterotrophic bacteriamore » cultured from ACP sediments and have been detected in deep subsurface environments elsewhere. The major source of organic carbon for heterotrophic metabolism in ACP deep aquifers is lignite that originated from plant material buried with the sediments. We speculate that the ability of the subsurface Sphingomonas strains to degrade a wide array of aromatic compounds represents an adaptation for utilization of sedimentary lignite. These and related subsurface Sphingomonas spp may play an important role in the transformation of sedimentary organic carbon in the aerobic and microaerobic regions of the deep aquifers of the ACP.« less

Ecology, physiology, and phylogeny of deep subsurface Sphingomonas sp.

PubMed

Fredrickson, J K; Balkwill, D L; Romine, M F; Shi, T

1999-10-01

Several new species of the genus Sphingomonas including S. aromaticivorans, S. stygia, and S. subterranea that have the capacity for degrading a broad range of aromatic compounds including toluene, naphthalene, xylenes, p-cresol, fluorene, biphenyl, and dibenzothiophene, were isolated from deeply-buried (>200 m) sediments of the US Atlantic coastal plain (ACP). In S. aromaticivorans F199, many of the genes involved in the catabolism of these aromatic compounds are encoded on a 184-kb conjugative plasmid; some of the genes involved in aromatic catabolism are plasmid-encoded in the other strains as well. Members of the genus Sphingomonas were common among aerobic heterotrophic bacteria cultured from ACP sediments and have been detected in deep subsurface environments elsewhere. The major source of organic carbon for heterotrophic metabolism in ACP deep aquifers is lignite that originated from plant material buried with the sediments. We speculate that the ability of the subsurface Sphingomonas strains to degrade a wide array of aromatic compounds represents an adaptation for utilization of sedimentary lignite. These and related subsurface Sphingomonas spp may play an important role in the transformation of sedimentary organic carbon in the aerobic and microaerobic regions of the deep aquifers of the ACP.

Development and Evaluation of Reverse Polyethylene Samplers for Marine Phase II Whole-Sediment Toxicity Identification Evaluation

EPA Science Inventory

Marine and estuarine sediments accumulate contaminants and act as a sink for a wide range of toxic chemicals. As a result, the sediments themselves can become a source of contamination. At sufficient levels, contaminated sediments can cause benthic impairments and toxicity to mar...

Google Earth-Based Grand Tours of the World's Ocean Basins and Marine Sediments

NASA Astrophysics Data System (ADS)

St John, K. K.; De Paor, D. G.; Suranovic, B.; Robinson, C.; Firth, J. V.; Rand, C.

2016-12-01

The GEODE project has produced a collection of Google Earth-based marine geology teaching resources that offer grand tours of the world's ocean basins and marine sediments. We use a map of oceanic crustal ages from Müller et al (2008; doi:10.1029/2007GC001743), and a set of emergent COLLADA models of IODP drill core data as a basis for a Google Earth tour introducing students to the world's ocean basins. Most students are familiar with basic seafloor spreading patterns but teaching experience suggests that few students have an appreciation of the number of abandoned ocean basins on Earth. Students also lack a valid visualization of the west Pacific where the oldest crust forms an isolated triangular patch and the ocean floor becomes younger towards the subduction zones. Our tour links geographic locations to mechanical models of rifting, seafloor spreading, subduction, and transform faulting. Google Earth's built-in earthquake and volcano data are related to ocean floor patterns. Marine sediments are explored in a Google Earth tour that draws on exemplary IODP core samples of a range of sediment types (e.g., turbidites, diatom ooze). Information and links are used to connect location to sediment type. This tour compliments a physical core kit of core catcher sections that can be employed for classroom instruction (geode.net/marine-core-kit/). At a larger scale, we use data from IMLGS to explore the distribution of the marine sediments types in the modern global ocean. More than 2,500 sites are plotted with access to original data. Students are guided to compare modern "type sections" of primary marine sediment lithologies, as well as examine site transects to address questions of bathymetric setting, ocean circulation, chemistry (e.g., CCD), and bioproductivity as influences on modern seafloor sedimentation. KMZ files, student exercises, and tips for instructors are available at geode.net/exploring-marine-sediments-using-google-earth.

Hydrodynamic Controls on Archaeal Tetraether Lipid Compositions in Washington Margin Sediments: Insights From Compound-Specific Radiocarbon Measurements

NASA Astrophysics Data System (ADS)

Uchida, M.; Eglinton, T. I.; Montlucon, D. B.; Pearson, A.; Hayes, J. M.

2008-12-01

Continental margin sediments represent a large sink of organic carbon derived from marine and terrestrial sources. Archaeal glycerol dibiphytanyl glycerol tetraether lipids (GDGTs) are derived from both marine and terrestrial sources and have been used both for reconstruction of paleo sea surface temperatures and as an index of terrestrial carbon input to the marine sediments. However, the sources and modes of supply as well as the preservation of GDGTs in marginal sediments are poorly understood. The distribution and deposition of GDGTs is further complicated by hydrodynamic processes. We have analyzed a suite of surface sediment samples collected along a transect from the mouth of the Columbia River, across the Washington Margin, to the Cascadia Basin in the northeast Pacific Ocean. Sediments were separated according to their grain size and hydrodynamic properties, and the organic matter characterized in terms of its bulk elemental, isotopic, and molecular properties. Here we present radiocarbon measurements on individual GDGTs, alkenones, and fatty acids from size-fractionated sediments from shelf and slope sediments, and discuss the results in the context of previous studies of the molecular abundances and isotopic compositions of sedimentary organic matter for in this region. Systematic variations in elemental, isotopic and molecular-level composition are observed across the different particle classes. Moreover, these variations are manifested in the isotopic composition of different molecular markers of both marine and terrestrial sources organic matter. Both marine-derived lipids, including alkenones and marine archaeal tetraethers, and soil microbe-derived tetraether lipids show strong distributional and isotopic variations among the size-fractionated sediments. These variations in terrestrial and marine biomarker properties inform on the sources, particle dynamics, and transport history of organic matter buried on river-influenced continental margins. The implications of these findings for the application of molecular markers as proxies of organic matter input, and on the interpretation of past marine and continental environmental conditions from sedimentary records will also be discussed.

Extraction of organic contaminants from marine sediments and tissues using microwave energy.

PubMed

Jayaraman, S; Pruell, R J; McKinney, R

2001-07-01

In this study, we compared microwave solvent extraction (MSE) to conventional methods for extracting organic contaminants from marine sediments and tissues with high and varying moisture content. The organic contaminants measured were polychlorinated biphenyl (PCB) congeners, chlorinated pesticides, and polycyclic aromatic hydrocarbons (PAHs). Initial experiments were conducted on dry standard reference materials (SRMs) and field collected marine sediments. Moisture content in samples greatly influenced the recovery of the analytes of interest. When wet sediments were included in a sample batch, low recoveries were often encountered in other samples in the batch, including the dry SRM. Experiments were conducted to test the effect of standardizing the moisture content in all samples in a batch prior to extraction. SRM1941a (marine sediment). SRM1974a (mussel tissue), as well as QA96SED6 (marine sediment), and QA96TIS7 (marine tissue), both from 1996 NIST Intercalibration Exercise were extracted using microwave and conventional methods. Moisture levels were adjusted in SRMs to match those of marine sediment and tissue samples before microwave extraction. The results demonstrated that it is crucial to standardize the moisture content in all samples, including dry reference material to ensure good recovery of organic contaminants. MSE yielded equivalent or superior recoveries compared to conventional methods for the majority of the compounds evaluated. The advantages of MSE over conventional methods are reduced solvent usage, higher sample throughput and the elimination of halogenated solvent usage.

Experimental investigation on consistency limits of cement and lime-stabilized marine sediments.

PubMed

Wang, DongXing; Zentar, Rachid; Abriak, Nor Edine; Xu, WeiYa

2012-06-01

This paper presents the effects of treatments with cement and lime on the consistency limits of marine sediments dredged from Dunkirk port. The Casagrande percussion test and the fall cone test were used to determine the liquid limits of raw sediments and treated marine sediments. For the evaluation of the plastic limits, the results of the fall cone test were compared with those obtained by the rolling test method. The relationship between the water contents and the penetration depths for the determination of the liquid limit and the plastic limit was explored. Liquid limits at 15.5 mm and plastic limits at 1.55 mm seem to be a more appropriate choice for the studied marine sediments compared with the limits determined by other used prediction methods. Finally, the effect of cement treatment and lime treatment on the Casagrande classification of the studied sediments was investigated according to the different prediction results.

Rare earth elements and neodymium isotopes in sedimentary organic matter

NASA Astrophysics Data System (ADS)

Freslon, Nicolas; Bayon, Germain; Toucanne, Samuel; Bermell, Sylvain; Bollinger, Claire; Chéron, Sandrine; Etoubleau, Joel; Germain, Yoan; Khripounoff, Alexis; Ponzevera, Emmanuel; Rouget, Marie-Laure

2014-09-01

We report rare earth element (REE) and neodymium (Nd) isotope data for the organic fraction of sediments collected from various depositional environments, i.e. rivers (n = 25), estuaries (n = 18), open-ocean settings (n = 15), and cold seeps (n = 12). Sedimentary organic matter (SOM) was extracted using a mixed hydrogen peroxide/nitric acid solution (20%-H2O2-0.02 M-HNO3), after removal of carbonate and oxy-hydroxide phases with dilute hydrochloric acid (0.25 M-HCl). A series of experimental tests indicate that extraction of sedimentary organic compounds using H2O2 may be complicated occasionally by partial dissolution of sulphide minerals and residual carbonates. However, this contamination is expected to be minor for REE because measured concentrations in H2O2 leachates are about two-orders of magnitude higher than in the above mentioned phases. The mean REE concentrations determined in the H2O2 leachates for samples from rivers, estuaries, coastal seas and open-ocean settings yield relatively similar levels, with ΣREE = 109 ± 86 ppm (mean ± s; n = 58). The organic fractions leached from cold seep sediments display even higher concentration levels (285 ± 150 ppm; mean ± s; n = 12). The H2O2 leachates for most sediments exhibit remarkably similar shale-normalized REE patterns, all characterized by a mid-REE enrichment compared to the other REE. This suggests that the distribution of REE in leached sedimentary organic phases is controlled primarily by biogeochemical processes, rather than by the composition of the source from which they derive (e.g. pore, river or sea-water). The Nd isotopic compositions for organic phases leached from river sediments are very similar to those for the corresponding detrital fractions. In contrast, the SOM extracted from marine sediments display εNd values that typically range between the εNd signatures for terrestrial organic matter (inferred from the analysis of the sedimentary detrital fractions) and marine organic matter (inferred from the analysis of local surface seawater). A notable exception is the case of organic matter (OM) fractions leached from cold seep sediment samples, which sometimes exhibit εNd values markedly different from both terrigenous and surface seawater signatures. This suggests that a significant fraction of organic compounds in these sediments may be derived from chemosynthetic processes, recycling pore water REE characterized by a distinct isotopic composition. Overall, our results confirm that organic matter probably plays an important role in the oceanic REE budget, through direct scavenging and remineralization within the water column. Both the high REE abundances and the shape of shale-normalized patterns for leached SOM also suggest that OM degradation in sub-surface marine sediments during early diagenesis could control, to a large extent, the distribution of REE in pore waters. Benthic fluxes of organic-bound REE could hence substantially contribute to the exchange processes between particulates and seawater that take place at ocean margins. Neodymium isotopes could provide useful information for tracing the origin (terrestrial versus marine) and geographical provenance of organic matter, with potential applications in paleoceanography. In particular, future studies should further investigate the potential of Nd isotopes in organic compounds preserved in sedimentary records for reconstructing past variations of surface ocean circulation.

Simulated oil release from oil-contaminated marine sediment in the Bohai Sea, China.

PubMed

Yuan, Lingling; Han, Longxi; Bo, Wenjie; Chen, Hua; Gao, Wenshen; Chen, Bo

2017-05-15

There is a high degree of heavy oil partitioning into marine sediments when an oil spill occurs. Contaminated sediment, as an endogenous pollution source, can re-pollute overlying water slowly. In this study, a static oil release process and its effects in marine sediment was investigated through a series of experiments with reproductive heavy oil-contaminated marine sediment. The oil release process was accurately simulated with a Lagergren first-order equation and reached equilibration after 48h. The fitted curve for equilibrium concentration (C 0 ) and first-order rate constant (k 1 ) for sediment pollution levels exhibited a first-order log relationship. The instantaneous release rate (dC t dt) was also calculated. The C 0 increased with increases in temperature and dissolved organic matter (DOM), and decreasing salinity. The k 1 increased with temperature, but was not affected by DOM and salinity. These results can be used to better understand the fate of heavy oil in contaminated sediments of the Bohai Sea. Copyright © 2017. Published by Elsevier Ltd.

Controls on the barium isotope compositions of marine sediments

NASA Astrophysics Data System (ADS)

Bridgestock, Luke; Hsieh, Yu-Te; Porcelli, Donald; Homoky, William B.; Bryan, Allison; Henderson, Gideon M.

2018-01-01

The accumulation of barium (Ba) in marine sediments is considered to be a robust proxy for export production, although this application can be limited by uncertainty in BaSO4 preservation and sediment mass accumulation rates. The Ba isotope compositions of marine sediments could potentially record insights into past changes in the marine Ba cycle, which should be insensitive to these limitations, enabling more robust interpretation of sedimentary Ba as a proxy. To investigate the controls on the Ba isotope compositions of marine sediments and their potential for paleo-oceanographic applications, we present the first Ba isotope compositions results for sediments, as well as overlying seawater depth profiles collected in the South Atlantic. Variations in Ba isotope compositions of the sediments predominantly reflect changes in the relative contributions of detrital and authigenic Ba sources, with open-ocean sediments constraining the isotope composition of authigenic Ba to be δ 138/134Ba ≈ + 0.1 ‰. This value is consistent with the average isotope composition inferred for sinking particulate Ba using simple mass balance models of Ba in the overlying water column and is hypothesized to reflect the removal of Ba from the upper water column with an associated isotopic fractionation of Δ diss-part 138/134Ba ≈ + 0.4 to +0.5. Perturbations to upper ocean Ba cycling, due to changes in export production and the supply of Ba via upwelling, should therefore be recorded by the isotope compositions of sedimentary authigenic Ba. Such insights will help to improve the reliable application of Ba accumulation rates in marine sediments as a proxy for past changes in export production.

Post-depositional formation of vivianite-type minerals alters sediment phosphorus records

NASA Astrophysics Data System (ADS)

Dijkstra, Nikki; Hagens, Mathilde; Egger, Matthias; Slomp, Caroline P.

2018-02-01

Phosphorus (P) concentrations in sediments are frequently used to reconstruct past environmental conditions in freshwater and marine systems, with high values thought to be indicative of a high biological productivity. Recent studies suggest that the post-depositional formation of vivianite, an iron(II)-phosphate mineral, might significantly alter trends in P with sediment depth. To assess its importance, we investigate a sediment record from the Bornholm Basin that was retrieved during the Integrated Ocean Drilling Program (IODP) Baltic Sea Paleoenvironment Expedition 347 in 2013, consisting of lake sediments overlain by brackish-marine deposits. Combining bulk sediment geochemistry with microanalysis using scanning electron microscope energy dispersive spectroscopy (SEM-EDS) and synchrotron-based X-ray absorption spectroscopy (XAS), we demonstrate that vivianite-type minerals rich in manganese and magnesium are present in the lake deposits just below the transition to the brackish-marine sediments (at 11.5 to 12 m sediment depth). In this depth interval, phosphate that diffuses down from the organic-rich, brackish-marine sediments meets porewaters rich in dissolved iron in the lake sediments, resulting in the precipitation of iron(II) phosphate. Results from a reactive transport model suggest that the peak in iron(II) phosphate originally occurred at the lake-marine transition (9 to 10 m) and moved downwards due to changes in the depth of a sulfidization front. However, its current position relative to the lake-marine transition is stable as the vivianite-type minerals and active sulfidization fronts have been spatially separated over time. Experiments in which vivianite was subjected to sulfidic conditions demonstrate that incorporation of manganese or magnesium in vivianite does not affect its susceptibility to sulfide-induced dissolution. Our work highlights that post-depositional formation of iron(II) phosphates such as vivianite has the potential to strongly alter sedimentary P records particularly in systems that are subject to environmental perturbation, such as a change in primary productivity, which can be associated with a lake-marine transition.

Lignin geochemistry of sediments from the Narragansett Bay Estuary

NASA Astrophysics Data System (ADS)

Requejo, A. G.; Brown, John S.; Boehm, Paul D.

1986-12-01

Cupric oxide oxidation has been employed to characterize the lignin geochemistry of Narragansett Bay sediments. Lignin concentrations throughout the estuary are low when expressed on a carbon-normalized basis, but can be characterized as enriched when expressed on a mass-normalized basis. This implies substantial dilution of the sedimentary lignin by inputs of lignin-poor carbon. Lignin concentrations do not correlate with the 13C isotopic composition of the sedimentary organic matter. These results are consistent with a sediment lignin component consisting of varying amounts of vascular plant debris and lignin-depleted organic matter, the latter originating from both marine (planktonic) and terrestrial (uncharacterized) sources. Compositional plots of lignin-derived phenols show that sediments in the upper estuary are influenced to a greater extent by gymnosperm lignin sources than those in the mid-and lower estuary. Given the extent to which the upper estuary is affected by pollution sources, inputs from anthropogenic discharges are the most likely cause of these compositional differences. However, an evaluation of processed paper products as an "anthropogenic" lignin source indicates that the lignin content of these materials is insufficient to account for the levels found in the sediments. Subsurface lignin compositions at an upper estuary site reveal that lignin originating from the inferred anthropogenic sources disappears at a depth shallower than that which would be expected based on the distribution of other trace organic pollutants (hydrocarbons and several synthetic organic compounds). We speculate that differences in either the depositional history or the degree of preservation of these two compound classes are responsible for the observed trends.

Development and Evaluation of Polychaete Reverse Samplers for Marine Phase II Whole Sediment Toxicitiy Identification Evaluations (TIE)

EPA Science Inventory

Marine and estuarine sediments accumulate contaminants and act as a sink for a wide range of toxic chemicals. As a result, the sediments themselves can become a source of contamination. At sufficient levels, contaminated sediments can cause benthic impairments and toxicity to m...

REMOVAL OF AMMONIA TOXCITY IN MARINE SEDIMENT TIES: A COMPARISON OF ULVA LACTUCA, ZEOLITE AND AREATION METHODS

EPA Science Inventory

Ammonia is suspected of causing some of the toxicity observed in marine sediment toxicity tests because it is sometimes found at elevated concentrations in marine interstitial waters. In marine waters, ammonia exists as un-ionized ammonia (NH3) and ammonium (NH4+) which combine ...

Large fluctuations of dissolved oxygen in the Indian and Pacific oceans during Dansgaard-Oeschger oscillations caused by variations of North Atlantic Deep Water subduction

USGS Publications Warehouse

Schmittner, A.; Galbraith, E.D.; Hostetler, S.W.; Pedersen, Thomas F.; Zhang, R.

2007-01-01

Paleoclimate records from glacial Indian and Pacific oceans sediments document millennial-scale fluctuations of subsurface dissolved oxygen levels and denitrification coherent with North Atlantic temperature oscillations. Yet the mechanism of this teleconnection between the remote ocean basins remains elusive. Here we present model simulations of the oxygen and nitrogen cycles that explain how changes in deepwater subduction in the North Atlantic can cause large and synchronous variations of oxygen minimum zones, throughout the Northern Hemisphere of the Indian and Pacific oceans, consistent with the paleoclimate records. Cold periods in the North Atlantic are associated with reduced nutrient delivery to the upper Indo-Pacific oceans, thereby decreasing productivity. Reduced export production diminishes subsurface respiration of organic matter leading to higher oxygen concentrations and less denitrification. This effect of reduced oxygen consumption dominates at low latitudes. At high latitudes in the Southern Ocean and North Pacific, increased mixed layer depths and steepening of isopycnals improve ocean ventilation and oxygen supply to the subsurface. Atmospheric teleconnections through changes in wind-driven ocean circulation modify this basin-scale pattern regionally. These results suggest that changes in the Atlantic Ocean circulation, similar to those projected by climate models to possibly occur in the centuries to come because of anthropogenic climate warming, can have large effects on marine ecosystems and biogeochemical cycles even in remote areas. Copyright 2007 by the American Geophysical Union.

GDGT and alkenone flux in the northern Gulf of Mexico: Implications for the TEX86 and UK137 paleothermometers

USGS Publications Warehouse

Richey, Julie; Tierney, Jessica E.

2016-01-01

The TEX86 and molecular biomarker proxies have been broadly applied in down-core marine sediments to reconstruct past sea surface temperature (SST). Although both TEX86 and have been interpreted as proxies for mean annual SST throughout the global ocean, regional studies of GDGTs and alkenones in sinking particles are required to understand the influence of seasonality, depth distribution and diagenesis on downcore variability. We measure GDGT and alkenone flux, as well as the TEX86 and indices in a 4-year sediment trap time series (2010-2014) in the northern Gulf of Mexico (nGoM), and compare these data with core-top sediments at the same location. GDGT and alkenone fluxes do not show a consistent seasonal cycle, however the largest flux peaks for both occurs in winter. co-varies with SST over the 4-year sampling interval, but the -SST relationship in this data set implies a smaller slope or non-linearity at high temperatures when compared with existing calibrations. Furthermore, the flux-weighted value from sinking particles is significantly lower than that of underlying core-top sediments, suggesting preferential diagenetic loss of the tri-unsaturated alkenone in sediments. TEX86 does not co-vary with SST, suggesting production in the subsurface upper water column. The flux-weighted mean TEX86 matches that of core-top sediments, confirming that TEX86 in the nGoM reflects local planktonic production rather than allochthonous or in-situ sedimentary production. We explore potential sources of uncertainty in both proxies in the nGoM, but demonstrate that they show nearly identical trends in 20th century SST, despite these factors.

Controls on subsurface methane fluxes and shallow gas formation in Baltic Sea sediment (Aarhus Bay, Denmark)

NASA Astrophysics Data System (ADS)

Flury, Sabine; Røy, Hans; Dale, Andrew W.; Fossing, Henrik; Tóth, Zsuzsanna; Spiess, Volkhard; Jensen, Jørn Bo; Jørgensen, Bo Barker

2016-09-01

Shallow gas accumulates in coastal marine sediments when the burial rate of reactive organic matter beneath the sulfate zone is sufficiently high and the methanogenic zone is sufficiently deep. We investigated the controls on methane production and free methane gas accumulation along a 400 m seismo-acoustic transect across a sharp transition from gas-free into gas-bearing sediment in Aarhus Bay (Denmark). Twelve gravity cores were taken, in which the pore water was analyzed for inorganic solutes while rates of organic carbon mineralization were measured experimentally by 35SO42- radiotracer method. The thickness of organic-rich Holocene mud increased from 5 to 10 m along the transect concomitant with a shallowing of the depth of the sulfate-methane transition from >4 m to 2.5 m. In spite of drastic differences in the distribution of methane and sulfate in the sediment along the transect, there were only small differences in total mineralization, and methanogenesis was only equivalent to about 1% of sulfate reduction. Shallow gas appeared where the mud thickness exceeded 8-9 m. Rates of methanogenesis increased along the transect as did the upward diffusive flux of methane. Interestingly, the increase in the sedimentation rate and Holocene mud thickness had only a modest direct effect on methanogenesis rates in deep sediments. This increase in methane flux, however, triggered a shallowing of the sulfate-methane transition which resulted in a large increase in methanogenesis at the top of the methanogenic zone. Thus, our results demonstrate a positive feedback mechanism that causes a strong enhancement of methanogenesis and explains the apparently abrupt appearance of gas when a threshold thickness of organic-rich mud is exceeded.

Arsenic, vanadium, iron, and manganese biogeochemistry in a deltaic wetland, southern Louisiana, USA

DOE PAGES

Telfeyan, Katherine; Breaux, Alexander; Kim, Jihyuk; ...

2017-04-05

Geochemical cycling of the redox-sensitive trace elements arsenic (As) and vanadium (V) was examined in shallow pore waters from a marsh in an interdistributary embayment of the lower Mississippi River Delta. In particular, we explore how redox changes with depth and distance from the Mississippi River affect As and V cycling in the marsh pore waters. Previous geophysical surveys and radon mass balance calculations suggested that Myrtle Grove Canal and bordering marsh receive fresh groundwater, derived in large part from seepage of the Mississippi River, which subsequently mixes with brackish waters of Barataria Bay. In addition, the redox geochemistry ofmore » pore waters in the wetlands is affected by Fe and S cycling in the shallow subsurface (0-20 cm). Sediments with high organic matter content undergo SO 4 2- reduction, a process ubiquitous in the shallow subsurface but largely absent at greater depths (~3 m). Instead, at depth, in the absence of organic-rich sediments, Fe concentrations are elevated, suggesting that reduction of Fe(III) oxides/oxyhydroxides buffers redox conditions. Arsenic and V cycling in the shallow subsurface are decoupled from their behavior at depth, where both V and As appear to be removed from solution by either diffusion or adsorption onto, or co-precipitation with, authigenic minerals within the deeper aquifer sediments. Pore water As concentrations are greatest in the shallow subsurface (e.g., up to 315 nmol kg -1 in the top ~20 cm of the sediment) but decrease with depth, reaching values <30 nmol kg -1 at depths between 3 and 4 m. Vanadium concentrations appear to be tightly coupled to Fe cycling in the shallow subsurface, but at depth, V may be adsorbed to clay or sedimentary organic matter (SOM). Diffusive fluxes are calculated to examine the export of trace elements from the shallow marsh pore waters to the overlying canal water that floods the marsh. The computed fluxes suggest that the shallow sediment serves as a source of Fe, Mn, and As to the surface waters, whereas the sediments act as a sink for V. Iron and Mn fluxes are substantial, ranging from 50 to 30,000 and 770 to 4,300 nmol cm -2 day -1, respectively, whereas As fluxes are much less, ranging from 2.1 to 17 nmol cm -2 day -1. Vanadium fluxes range from 3.0 nmol cm -2 day -1 directed into the sediment to 1.7 nmol cm -2 day -1 directed out of the sediment« less

Arsenic, vanadium, iron, and manganese biogeochemistry in a deltaic wetland, southern Louisiana, USA

DOE Office of Scientific and Technical Information (OSTI.GOV)

Telfeyan, Katherine; Breaux, Alexander; Kim, Jihyuk

Geochemical cycling of the redox-sensitive trace elements arsenic (As) and vanadium (V) was examined in shallow pore waters from a marsh in an interdistributary embayment of the lower Mississippi River Delta. In particular, we explore how redox changes with depth and distance from the Mississippi River affect As and V cycling in the marsh pore waters. Previous geophysical surveys and radon mass balance calculations suggested that Myrtle Grove Canal and bordering marsh receive fresh groundwater, derived in large part from seepage of the Mississippi River, which subsequently mixes with brackish waters of Barataria Bay. In addition, the redox geochemistry ofmore » pore waters in the wetlands is affected by Fe and S cycling in the shallow subsurface (0-20 cm). Sediments with high organic matter content undergo SO 4 2- reduction, a process ubiquitous in the shallow subsurface but largely absent at greater depths (~3 m). Instead, at depth, in the absence of organic-rich sediments, Fe concentrations are elevated, suggesting that reduction of Fe(III) oxides/oxyhydroxides buffers redox conditions. Arsenic and V cycling in the shallow subsurface are decoupled from their behavior at depth, where both V and As appear to be removed from solution by either diffusion or adsorption onto, or co-precipitation with, authigenic minerals within the deeper aquifer sediments. Pore water As concentrations are greatest in the shallow subsurface (e.g., up to 315 nmol kg -1 in the top ~20 cm of the sediment) but decrease with depth, reaching values <30 nmol kg -1 at depths between 3 and 4 m. Vanadium concentrations appear to be tightly coupled to Fe cycling in the shallow subsurface, but at depth, V may be adsorbed to clay or sedimentary organic matter (SOM). Diffusive fluxes are calculated to examine the export of trace elements from the shallow marsh pore waters to the overlying canal water that floods the marsh. The computed fluxes suggest that the shallow sediment serves as a source of Fe, Mn, and As to the surface waters, whereas the sediments act as a sink for V. Iron and Mn fluxes are substantial, ranging from 50 to 30,000 and 770 to 4,300 nmol cm -2 day -1, respectively, whereas As fluxes are much less, ranging from 2.1 to 17 nmol cm -2 day -1. Vanadium fluxes range from 3.0 nmol cm -2 day -1 directed into the sediment to 1.7 nmol cm -2 day -1 directed out of the sediment« less

Reoxidation of estuarine sediments during simulated resuspension events: Effects on nutrient and trace metal mobilisation

NASA Astrophysics Data System (ADS)

Vidal-Durà, Andrea; Burke, Ian T.; Stewart, Douglas I.; Mortimer, Robert J. G.

2018-07-01

Estuarine environments are considered to be nutrient buffer systems as they regulate the delivery of nutrients from rivers to the ocean. In the Humber Estuary (UK) seawater and freshwater mixing during tidal cycles leads to the mobilisation of oxic surface sediments (0-1 cm). However, less frequent seasonal events can also mobilise anoxic subsurface (5-10 cm) sediments, which may have further implications for the estuarine geochemistry. A series of batch experiments were carried out on surface and subsurface sediments taken from along the salinity gradient of the Humber Estuary. The aim was to investigate the geochemical processes driving major element (N, Fe, S, and Mn) redox cycling and trace metal behaviour during simulated resuspension events. The magnitude of major nutrient and metal release was significantly greater during the resuspension of outer estuarine sediments rather than from inner estuarine sediments. When comparing resuspension of surface versus subsurface sediment, only the outer estuary experiments showed significant differences in major nutrient behaviour with sediment depth. In general, any ammonium, manganese and trace metals (Cu and Zn) released during the resuspension experiments were rapidly removed from solution as new sorption sites (i.e. Fe/Mn oxyhydroxides) formed. Therefore Humber estuary sediments showed a scavenging capacity for these dissolved species and hence may act as an ultimate sink for these elements. Due to the larger aerial extent of the outer estuary intertidal mudflats in comparison with the inner estuary area, the mobilisation of the outer estuary sediments (more reducing and richer in sulphides and iron) may have a greater impact on the transport and cycling of nutrients and trace metals. Climate change-associated sea level rise combined with an increasing frequency of major storm events in temperate zones, which are more likely to mobilise deeper sediment regions, will impact the nutrient and metal inputs to the coastal waters, and therefore enhance the likelihood of eutrophication in this environment.

PHOTOACTIVATION AND TOXICITY OF MIXTURES OF POLYCYCLIC AROMATIC HYDROCARBON COMPOUNDS IN MARINE SEDIMENT

EPA Science Inventory

The direct toxicity and photoinduced toxicity of sediment-associated acenaphthene, phenanthrene, fluoranthene, and pyrene were determined for the marine amphipod Rhepoxynius abronius. The four polycyclic aromatic hydrocarbons (PAHs) were spiked into sediment in a concentration se...

Sulfate reduction and oxic respiration in marine sediments: implications for organic carbon preservation in euxinic environments

NASA Technical Reports Server (NTRS)

Canfield, D. E.; DeVincenzi, D. L. (Principal Investigator)

1989-01-01

Compilations have been made of sulfate reduction rates and oxic respiration rates over the entire range of marine sedimentation rates, and sedimentary environments, including several euxinic sites. These data show, consistent with the findings of Jorgensen (1982, Nature, 296, 643-645), that sulfate reduction and oxic respiration oxidize equal amounts of organic carbon in nearshore sediments. As sedimentation rates decrease, oxic respiration, becomes progressively more important, and in deep-sea sediments 100-1000 times more organic carbon is oxidized by oxic respiration than by sulfate reduction. By contrast, nearly as much organic carbon is oxidized by sulfate reduction in euxinic sediments as is oxidized by the sum of sulfate reduction and oxic respiration in normal marine sediments of similar deposition rate. This observation appears at odds with the enhanced preservation of organic carbon observed in euxinic sediments. However, only small reductions in (depth-integrated) organic carbon decomposition rates (compared to normal marine) are required to give both high organic carbon concentrations and enhanced carbon preservation in euxinic sediments. Lower rates of organic carbon decomposition (if only by subtle amounts) are explained by the diminished ability of anaerobic bacteria to oxidize the full suite of sedimentary organic compounds.

Decadal to centennial oscillations in the upper and lower boundaries of the San Diego, California margin Oxygen Minimum Zone

NASA Astrophysics Data System (ADS)

Myhre, S. E.; Hill, T. M.; Frieder, C.; Grupe, B.

2016-02-01

Here we present two new marine sediment archives from the continental margin of San Diego, California, USA, which record decadal to centennial oscillations in the hydrographic structure of the Eastern Pacific Oxygen Minimum Zone (OMZ). The two cores, located at 528 and 1,180 m water depth, record oceanographic history across overlapping timescales. Biotic communities, including Foraminifera, Echinodermata, Brachiopoda, Mollusca and Ostrocoda, were examined in subsurface (>10 cm sediment core depth) samples. Chronologies for both cores were developed with reservoir-corrected 14C dates of mixed planktonic Foraminifera and linearly interpolated sedimentation rates. Sediment ages for the cores range from 400-1,800 years before present. Indices of foraminiferal community density, diversity and evenness are applied as biotic proxies to track the intensification of the continental margin OMZ. Biotic communities at the shallower site reveal multi-decadal to centennial timescales of OMZ intensification, whereas the deeper site exhibits decadal to multi-decadal scales of hydrographic variability. Hypoxia-associated foraminiferal genera Uvigerina and Bolivina were compositionally dominant during intervals of peak foraminiferal density. Invertebrate assemblages often co-occurred across taxa groups, and thereby provide a broad trophic context for interpreting changes in the margin seafloor. Variability in the advection of Pacific Equatorial Water may mechanistically contribute to this described hydrographic variability. This investigation reconstructs historical timescales of OMZ intensification, seafloor ecological variability, and synchrony between open-ocean processes and regional climate.

Deep subsurface life from North Pond: Enrichment, isolation, characterization and genomes of heterotrophic bacteria

DOE Office of Scientific and Technical Information (OSTI.GOV)

Russell, Joseph A.; Leon-Zayas, Rosa; Wrighton, Kelly

Studies of subsurface microorganisms have yielded few environmentally relevant isolates for laboratory studies. In order to address this lack of cultivated microorganisms, we initiated several enrichments on sediment and underlying basalt samples from North Pond, a sediment basin ringed by basalt outcrops underlying an oligotrophic watercolumn west of the Mid-Atlantic Ridge at 22° N. In contrast to anoxic enrichments, growth was observed in aerobic, heterotrophic enrichments from sediment of IODP Hole U1382B at 4 and 68 m below seafloor (mbsf). These sediment depths, respectively, correspond to the fringes of oxygen penetration from overlying seawater in the top of the sedimentmore » column and upward migration of oxygen from oxic seawater from the basalt aquifer below the sediment. Here we report the enrichment, isolation, initial characterization and genomes of three isolated aerobic heterotrophs from North Pond sediments; an Arthrobacter species from 4 mbsf, and Paracoccus and Pseudomonas species from 68 mbsf. These cultivated bacteria are represented in the amplicon 16S rRNA gene libraries created from whole sediments, albeit at low (up to 2%) relative abundance. We provide genomic evidence from our isolates demonstrating that the Arthrobacter and Pseudomonas isolates have the potential to respire nitrate and oxygen, though dissimilatory nitrate reduction could not be confirmed in laboratory cultures. Furthermore, the cultures from this study represent members of abundant phyla, as determined by amplicon sequencing of environmental DNA extracts, and allow for further studies into geochemical factors impacting life in the deep subsurface.« less

Deep subsurface life from North Pond: Enrichment, isolation, characterization and genomes of heterotrophic bacteria

DOE PAGES

Russell, Joseph A.; Leon-Zayas, Rosa; Wrighton, Kelly; ...

2016-05-10

Studies of subsurface microorganisms have yielded few environmentally relevant isolates for laboratory studies. In order to address this lack of cultivated microorganisms, we initiated several enrichments on sediment and underlying basalt samples from North Pond, a sediment basin ringed by basalt outcrops underlying an oligotrophic watercolumn west of the Mid-Atlantic Ridge at 22° N. In contrast to anoxic enrichments, growth was observed in aerobic, heterotrophic enrichments from sediment of IODP Hole U1382B at 4 and 68 m below seafloor (mbsf). These sediment depths, respectively, correspond to the fringes of oxygen penetration from overlying seawater in the top of the sedimentmore » column and upward migration of oxygen from oxic seawater from the basalt aquifer below the sediment. Here we report the enrichment, isolation, initial characterization and genomes of three isolated aerobic heterotrophs from North Pond sediments; an Arthrobacter species from 4 mbsf, and Paracoccus and Pseudomonas species from 68 mbsf. These cultivated bacteria are represented in the amplicon 16S rRNA gene libraries created from whole sediments, albeit at low (up to 2%) relative abundance. We provide genomic evidence from our isolates demonstrating that the Arthrobacter and Pseudomonas isolates have the potential to respire nitrate and oxygen, though dissimilatory nitrate reduction could not be confirmed in laboratory cultures. Furthermore, the cultures from this study represent members of abundant phyla, as determined by amplicon sequencing of environmental DNA extracts, and allow for further studies into geochemical factors impacting life in the deep subsurface.« less

Bioavailability of sediment-bound contaminants to marine organisms

DOE Office of Scientific and Technical Information (OSTI.GOV)

Brown, B.; Neff, J.

1993-09-01

The bioavailability of sediment-bound contaminants to marine organisms indicates that there exists a potential for transfer of these contaminants through marine food webs to commercial fisheries products consumed by humans. However, there has been relatively little effort to combine and synthesize data on chemical/biological interactions between benthic animals and seagrasses and the sediments in which they reside on the one hand, and on the chemistry of bioaccumulation on the other. This report provides a conceptual basis for an approach to bioavailability and biomagnification of sediment-bound contaminants that reviews biological and chemical approaches.

Microbially catalyzed nitrate-dependent metal/radionuclide oxidation in shallow subsurface sediments

NASA Astrophysics Data System (ADS)

Weber, K.; Healy, O.; Spanbauer, T. L.; Snow, D. D.

2011-12-01

Anaerobic, microbially catalyzed nitrate-dependent metal/radionuclide oxidation has been demonstrated in a variety of sediments, soils, and groundwater. To date, studies evaluating U bio-oxidation and mobilization have primarily focused on anthropogenically U contaminated sites. In the Platte River Basin U originating from weathering of uranium-rich igneous rocks in the Rocky Mountains was deposited in shallow alluvial sediments as insoluble reduced uranium minerals. These reduced U minerals are subject to reoxidation by available oxidants, such nitrate, in situ. Soluble uranium (U) from natural sources is a recognized contaminant in public water supplies throughout the state of Nebraska and Colorado. Here we evaluate the potential of anaerobic, nitrate-dependent microbially catalyzed metal/radionuclide oxidation in subsurface sediments near Alda, NE. Subsurface sediments and groundwater (20-64ft.) were collected from a shallow aquifer containing nitrate (from fertilizer) and natural iron and uranium. The reduction potential revealed a reduced environment and was confirmed by the presence of Fe(II) and U(IV) in sediments. Although sediments were reduced, nitrate persisted in the groundwater. Nitrate concentrations decreased, 38 mg/L to 30 mg/L, with increasing concentrations of Fe(II) and U(IV). Dissolved U, primarily as U(VI), increased with depth, 30.3 μg/L to 302 μg/L. Analysis of sequentially extracted U(VI) and U(IV) revealed that virtually all U in sediments existed as U(IV). The presence of U(IV) is consistent with reduced Fe (Fe(II)) and low reduction potential. The increase in aqueous U concentrations with depth suggests active U cycling may occur at this site. Tetravalent U (U(IV)) phases are stable in reduced environments, however the input of an oxidant such as oxygen or nitrate into these systems would result in oxidation. Thus co-occurrence of nitrate suggests that nitrate could be used by bacteria as a U(IV) oxidant. Most probable number enumeration of nitrate-dependent U(IV) oxidizing microorganisms demonstrated an abundant community ranging from 1.61x104 to 2.74x104 cells g-1 sediment. Enrichments initiated verified microbial U reduction and U oxidation coupled to nitrate reduction. Sediment slurries were serially diluted and incubated over a period of eight weeks and compared to uninoculated controls. Oxidation (0-4,554 μg/L) and reduction (0-55 μg/L) of U exceeded uninoculated controls further providing evidence of a U biogeochemical cycling in these subsurface sediments. The oxidation of U(IV) could contribute to U mobilization in the groundwater and result in decreased water quality. Not only could nitrate serve as an oxidant, but Fe(III) could also contribute to U mobilization. Nitrate-dependent Fe(II) oxidation is an environmentally ubiquitous process facilitated by a diversity of microorganisms. Additional research is necessary in order to establish a role of biogenic Fe(III) oxides in U geochemical cycling at this site. These microbially mediated processes could also have a confounding effect on uranium mobility in subsurface environments.

In situ Detection of Microbial Life in the Deep Biosphere in Igneous Ocean Crust.

PubMed

Salas, Everett C; Bhartia, Rohit; Anderson, Louise; Hug, William F; Reid, Ray D; Iturrino, Gerardo; Edwards, Katrina J

2015-01-01

The deep biosphere is a major frontier to science. Recent studies have shown the presence and activity of cells in deep marine sediments and in the continental deep biosphere. Volcanic lavas in the deep ocean subsurface, through which substantial fluid flow occurs, present another potentially massive deep biosphere. We present results from the deployment of a novel in situ logging tool designed to detect microbial life harbored in a deep, native, borehole environment within igneous oceanic crust, using deep ultraviolet native fluorescence spectroscopy. Results demonstrate the predominance of microbial-like signatures within the borehole environment, with densities in the range of 10(5) cells/mL. Based on transport and flux models, we estimate that such a concentration of microbial cells could not be supported by transport through the crust, suggesting in situ growth of these communities.

Structure and function of subsurface microbial communities affecting radionuclide transport and bioimmobilization

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kostka, Joel E.; Prakash, Om; Green, Stefan J.

2012-05-01

Our objectives were to: 1) isolate and characterize novel anaerobic prokaryotes from subsurface environments exposed to high levels of mixed contaminants (U(VI), nitrate, sulfate), 2) elucidate the diversity and distribution of metabolically active metal- and nitrate-reducing prokaryotes in subsurface sediments, and 3) determine the biotic and abiotic mechanisms linking electron transport processes (nitrate, Fe(III), and sulfate reduction) to radionuclide reduction and immobilization. Mechanisms of electron transport and U(VI) transformation were examined under near in situ conditions in sediment microcosms and in field investigations. Field sampling was conducted at the Oak Ridge Field Research Center (ORFRC), in Oak Ridge, Tennessee. Themore » ORFRC subsurface is exposed to mixed contamination predominated by uranium and nitrate. In short, we effectively addressed all 3 stated objectives of the project. In particular, we isolated and characterized a large number of novel anaerobes with a high bioremediation potential that can be used as model organisms, and we are now able to quantify the function of subsurface sedimentary microbial communities in situ using state-of-the-art gene expression methods (molecular proxies).« less

Factors Effecting the Fate and Transport of CL-20 in the Vadose Zone and Groundwater: Final Report 2002 - 2004 SERDP Project CP-1255

DOE Office of Scientific and Technical Information (OSTI.GOV)

Szecsody, James E.; Riley, Robert G.; Devary, Brooks J.

2005-06-01

This SERDP-funded project was initiated to investigate the fate of CL-20 in the subsurface environment, with a focus on identification and quantification of geochemical and microbial reactions of CL-20. CL-20 can be released to the surface and subsurface terrestrial environment by: a) manufacturing processes, b) munition storage, and c) use with low order detonation or unexploded ordnance. The risk of far-field subsurface migration was assessed through labora-tory experiments with a variety of sediments and subsurface materials to quantify processes that control CL-20 sorption-limited migration and degradation. Results of this study show that CL-20 will exhibit differing behavior in the subsurfacemore » terrestrial environment: 1. CL-20 on the sediment surface will photodegrade and interact with plants/animals (described in other SERDP projects CU 1254, 1256). CL-20 will exhibit greater sorption in humid sediments to organic matter. Transport will be solubility limited (i.e., low CL-20 aqueous solubility). 2. CL-20 infiltration into soils (<2 m) from spills will be subject to sorption to soil organic matter (if present), and low to high biodegradation rates (weeks to years) depending on the microbial population (greater in humid environment). 3. CL-20 in the vadose zone (>2 m) will be, in most cases, subject to low sorption and low degradation rates, so would persist in the subsurface environment and be at risk for deep migration. Low water content in arid regions will result in a decrease in both sorption and the degradation rate. Measured degradation rates in unsaturated sediments of years would result in significant subsurface migration distances. 4. CL-20 in groundwater will be subject to some sorption but likely very slow degradation rates. CL-20 sorption will be greater than RDX. Most CL-20 degradation will be abiotic (ferrous iron and other transition metals), because most deep subsurface systems have extremely low natural microbial populations. Degradation rates will range from weeks (iron reducing systems) to years. Although CL-20 will move rapidly through most sediments in the terrestrial environment, subsurface remediation can be utilized for cleanup. Transformation of CL-20 to intermediates can be rapidly accomplished under: a) reducing conditions (CL-20 4.1 min. half-life, RDX 18 min. half-life), b) alkaline (pH >10) conditions, and c) bioremediation with added nutrients. CL-20 degradation to intermediates may be insufficient to mitigate environmental impact, as the toxicity of many of these compounds is unknown. Biostimulation in oxic to reducing systems by carbon and nutrient addition can mineralize CL-20, with the most rapid rates occurring under reducing conditions.« less

STRUCTURE AND FUNCTION OF SUBSURFACE MICROBIAL COMMUNITIES AFFECTING RADIONUCLIDE TRANSPORT AND BIOIMMOBILIZATION

DOE Office of Scientific and Technical Information (OSTI.GOV)

Joel E. Kostka; Lee Kerkhof; Kuk-Jeong Chin

2011-06-15

The objectives of this project were to: (1) isolate and characterize novel anaerobic prokaryotes from subsurface environments exposed to high levels of mixed contaminants (U(VI), nitrate, sulfate), (2) elucidate the diversity and distribution of metabolically active metal- and nitrate-reducing prokaryotes in subsurface sediments, and (3) determine the biotic and abiotic mechanisms linking electron transport processes (nitrate, Fe(III), and sulfate reduction) to radionuclide reduction and immobilization. Mechanisms of electron transport and U(VI) transformation were examined under near in situ conditions in sediment microcosms and in field investigations at the Oak Ridge Field Research Center (ORFRC), in Oak Ridge, Tennessee, where themore » subsurface is exposed to mixed contamination predominated by uranium and nitrate. A total of 20 publications (16 published or 'in press' and 4 in review), 10 invited talks, and 43 contributed seminars/ meeting presentations were completed during the past four years of the project. PI Kostka served on one proposal review panel each year for the U.S. DOE Office of Science during the four year project period. The PI leveraged funds from the state of Florida to purchase new instrumentation that aided the project. Support was also leveraged by the PI from the Joint Genome Institute in the form of two successful proposals for genome sequencing. Draft genomes are now available for two novel species isolated during our studies and 5 more genomes are in the pipeline. We effectively addressed each of the three project objectives and research highlights are provided. Task I - Isolation and characterization of novel anaerobes: (1) A wide range of pure cultures of metal-reducing bacteria, sulfate-reducing bacteria, and denitrifying bacteria (32 strains) were isolated from subsurface sediments of the Oak Ridge Field Research Center (ORFRC), where the subsurface is exposed to mixed contamination of uranium and nitrate. These isolates which are new to science all show high sequence identity to sequences retrieved from ORFRC subsurface. (2) Based on physiological and phylogenetic characterization, two new species of subsurface bacteria were described: the metal-reducer Geobacter daltonii, and the denitrifier Rhodanobacter denitrificans. (3) Strains isolated from the ORFRC show that Rhodanobacter species are well adapted to the contaminated subsurface. Strains 2APBS1 and 116-2 grow at high salt (3% NaCl), low pH (3.5) and tolerate high concentrations of nitrate (400mM) and nitrite (100mM). Strain 2APBS1 was demonstrated to grow at in situ acidic pHs down to 2.5. (4) R. denitrificans strain 2APBS1 is the first described Rhodanobacter species shown to denitrify. Nitrate is almost entirely converted to N2O, which may account for the large accumulation of N2O in the ORFRC subsurface. (5) G. daltonii, isolated from uranium- and hydrocarbon-contaminated subsurface sediments of the ORFRC, is the first organism from the subsurface clade of the genus Geobacter that is capable of growth on aromatic hydrocarbons. (6) High quality draft genome sequences and a complete eco-physiological description are completed for R. denitrificans strain 2APBS1 and G. daltonii strain FRC-32. (7) Given their demonstrated relevance to DOE remediation efforts and the availability of detailed genotypic/phenotypic characterization, Rhodanobacter denitrificans strain 2APBS1 and Geobacter daltonii strain FRC-32 represent ideal model organisms to provide a predictive understanding of subsurface microbial activity through metabolic modeling. Tasks II and III-Diversity and distribution of active anaerobes and Mechanisms linking electron transport and the fate of radionuclides: (1) Our study showed that members of genus Rhodanobacter and Geobacter are abundant and active in the uranium and nitrate contaminated subsurface. In the contaminant source zone of the Oak Ridge site, Rhodanobacter spp. are the predominant, active organisms detected (comprising 50% to 100% of rRNA detected). (2) We demonstrated for the first time that the function of microbial communities can be quantified in subsurface sediments using messenger RNA assays (molecular proxies) under in situ conditions. (3) Active Geobacteraceae were identified and phylogenetically characterized from the cDNA of messenger RNA extracted from ORFRC subsurface sediment cores. Multiple clone sequences were retrieved from G. uraniireducens, G. daltonii, and G. metallireducens. (4) Results show that Geobacter strain FRC-32 is capable of growth on benzoate, toluene and benzene as the electron donor, thereby providing evidence that this strain is physiologically distinct from other described members of the subsurface Geobacter clade. (5) Fe(III)-reducing bacteria transform structural Fe in clay minerals from their layer edges rather than from their basal surfaces.« less

Toxicity, Bioaccumulation and Biotransformation of Silver Nanoparticles in Marine Organisms.

EPA Science Inventory

The toxicity, bioaccumulation and biotransformation of citrate and polyvinylpyrrolidone (PVP) coated silver nanoparticles (NPs) (AgNP-citrate and AgNP-PVP) in marine organisms via marine sediment exposure was investigated. Results from 7-d sediment toxicity tests indicate that Ag...

Shelfal sediment transport by undercurrents forces turbidity current activity during high sea level, Chile continental margin

NASA Astrophysics Data System (ADS)

Bernhardt, Anne; Hebbeln, Dierk; Regenberg, Marcus; Lückge, Andreas; Strecker, Manfred. R.

2016-04-01

Understanding the links between terrigenous sediment supply and marine transport and depositional processes along tectonically active margins is essential to decipher turbidite successions as potential archives of climatic and seismic forcings and to comprehend timing and quantity of marine clastic deposition. Sequence stratigraphic models predict coarse-grained terrigenous sediment delivery to deep-marine sites mainly during sea-level fall and lowstand. Marine clastic deposition during periods of transgression and highstand has been attributed to the continued geomorphic connectivity between terrestrial sediment sources and marine sinks (e.g., rivers connected to submarine canyons) often facilitated by narrow shelves, high sediment supply causing delta migration to the shelf edge, and/or abrupt increases in sediment supply due to climatic variability or catastrophic events. To decipher the controls on Holocene highstand turbidite deposition, we analyzed twelve sediment cores of spatially disparate, coeval Holocene turbidite systems along the Chile margin (29-40°S) with changing climatic and geomorphic characteristics but uniform changes of sea level. Intraslope basins in north-central Chile (29-33°S) offshore a narrow to absent shelf record a shut-off of turbidite activity during the Holocene. In contrast, core sites in south-central Chile (36-40°S) offshore a wide continental shelf have repeatedly experienced turbidite deposition during sea-level highstand conditions, even though most of the depocenters are not connected via canyons to sediment sources. The interplay of stable high sediment supply related to strong onshore precipitation in combination with a wide shelf, over which undercurrents move sediment towards the shelf edge, appears to control Holocene turbidite sedimentation and sediment export to the deep sea.

Monitoring Sediment Size Distributions in a Regulated Gravel-Bed Coastal Stream

NASA Astrophysics Data System (ADS)

O'Connor, M. D.; Lewis, J.; Andrew, G.

2014-12-01

Lagunitas Creek drains 282 km2 in coastal Marin County, California. The watershed contains water supply reservoirs, urban areas, parks and habitat for threatened species (e.g. coho salmon). Water quality is impaired by excess fine sediment, and a plan to improve water quality (i.e. TMDL) was adopted by State authorities in 2014. The TMDL asserts changes in sediment delivery, transport, and storage contributed to the decline of coho. A sediment source analysis found a 2x increase in sediment supply. Concentrations of sand and fine gravel in the channel are elevated and, during high flows, more mobile. The Federal Coho Salmon Recovery Plan (2012) describes sediment conditions affecting coho habitat as "fair". Reservoir managers were directed by the State in 1995 to reduce sedimentation and improve riparian vegetation and woody debris to improve fish habitat. Prior sediment monitoring found variability related primarily to intense winter runoff without identifying clear trends. A new sediment monitoring program was implemented in 2012 for ongoing quantification of sediment conditions. The goal of monitoring is to determine with specified statistical certainty changes in sediment conditions over time and variation among reaches throughout the watershed. Conditions were compared in 3 reaches of Lagunitas Cr. and 2 tributaries. In each of the 5 channel reaches, 4 shorter reaches were sampled in a systematic grid comprised of 30 cross-channel transects spaced at intervals of 1/2 bankfull width and 10 sample points per transect; n=1200 in 5 channel reaches. Sediment diameter class (one clast), sediment facies (a patch descriptor), and habitat type were observed at each point. Fine sediment depth was measured by probing the thickness of the deposit, providing a means to estimate total volume of fine sediment and a measure of rearing habitat occupied by fine sediment (e.g. V*). Sub-surface sediment samples were collected and analyzed for size distribution at two scales: a larger sample of a spawning site in each sample reach and 20 smaller sub-samples of fine sediment facies. These data provide a robust description of streambed sediment conditions (e.g. % < 1 mm) expected to vary systematically across the watershed (e.g. fining downstream) and over time in response to management of watershed resources.

Pacing of deep marine sedimentation in the middle Eocene synorogenic Ainsa Basin, Spanish Pyrenees: deconvolving a 6myr record of tectonic and climate controls

NASA Astrophysics Data System (ADS)

Mac Niocaill, C.; Cantalejo, B.; Pickering, K. T.; Grant, M.; Johansen, K.

2016-12-01

The Middle Eocene thrust-top Ainsa Basin of Northern Spain preserves world-class exposures of deep-marine submarine fan and related deposits. Detailed paleomagnetic, micropaleontologic, and time-series analysis enable us to deconvolve, for the first time in any ancient deep-marine basin worldwide, both the pacing on deposition of the fine-grained interfan sediments and the main sandbodies (submarine fans) through the history of the deep-marine basin. Our magnetostratigraphy and faunal constraints provide a chronological framework for sedimentation in the basin. We use time-series analysis of a range of geochemical and sedimentologic data to identify likely climatic signals in the sedimentary archive. This has enabled us to test the likely importance of climate versus tectonics in controlling deposition. We show that the fine-grained interfan sedimentation preserves a dominant Milankovitch-like cyclicity, whereas the sandbodies (fans) reflect a complex interplay of controls such as tectonics and climate in the sediment source area, including shallow-marine staging areas for sediment redeposition into deeper water. These results not only provide critical information about the timing of substantial coarse clastic delivery into the Ainsa Basin but also give constraints on sediment flux over a 6 Myr window.

IMPORTANCE OF INTERSTITIAL, OVERLYING WATER AND WHOLE SEDIMENT EXPOSURES TO BIOACCUMUALTION BY MARINE BIVALVES

EPA Science Inventory

During the performance of contaminated sediment studies using nonpolar pollutants, like polyclorinated biphenyls (PCBs), with marine organisms, the routes of exposure can include whole sediment, overlying waters and interstitial waters (assuming no feeding). These routes can be f...

Modern and relict sedimentary systems of the semi-arid continental shelf in NE Brazil

NASA Astrophysics Data System (ADS)

Ximenes Neto, Antonio Rodrigues; Morais, Jáder Onofre de; Ciarlini, Clairton

2018-07-01

This paper describes the carbonate-siliciclastic system of the equatorial continental shelf of NE Brazil (East Ceará) based on X-ray fluorescence (XRF), grain size, CaCO3, shallow seismic and remotely operated vehicle (ROV) analyses. Data were obtained for two sectors: 1) Halimeda Bank (HB), inner shelf (-12 m), and 2) transverse profile (TP), inner to outer shelf-upper slope (-5 to -100 m). In total, 72 samples were collected, and 29 km of seismic lines (HB) and ROV profiles (HB and TP) were surveyed. The main chemical elements were Ca and Si (93%). These elements occur in two types of shallow marine sediments: carbonate (mainly autochthonous) and siliciclastics (terrigenous/allochthonous/relict). With respect to the chemical elements, a strong negative correlation was observed between calcareous (Ca and Sr) and siliciclastic (Si, Al, and K) components. Strontium does not always show a strong positive correlation with Ca. The average CaCO3 contents of 81% and 91% were determined for the HB and TP, respectively. The profiles show a predominance of carbonate sediments; however, the HB demonstrates a greater continental influence (inner shelf). The grain size presents a prevalence of sand (82%) in relation to gravel (18%). This particle size variation is mainly due to the breakdown of Halimeda nodules, siliciclastic sediments in the finer fraction (>2.5Φ), and the presence of gravel with iron coating (relict). Two types of echo-characters have been identified. Both are associated with the large presence of carbonate sediments. Echo I shows the bottom surface with continuity in the sub-bottom without a subsurface reflector. Echo II presents a discontinuous subsurface reflector. The ROV allowed the observation of algae patches in higher floors and gravelly and sandy bioclastics in the lowest sectors. Large patches of calcareous green algae, Halimeda, occur in the inner shelf below the 15 m isobath, mainly due to the semi-arid climate (weak sediment supply from the mainland), geographical position (equatorial) and oceanographic conditions (hydrodynamic and biogeochemistry). It has been concluded that the seafloor of the semi-arid continental shelf of East Ceará (NE Brazil) shows modern predominance of carbonate deposition based on the lack of contaminants, geochemical purity of carbonate sediments, and high percentage of CaCO3. The conditions for exploitation in the intermediate sector are provided. However, it would be ideal to perform punctual extraction and analyze the resilience and regeneration of Halimeda incrassata and the consequences for fisheries (important economic resource of the region).

A Review of distribution and quantity of lingering subsurface oil from the Exxon Valdez Oil Spill

NASA Astrophysics Data System (ADS)

Nixon, Zachary; Michel, Jacqueline

2018-01-01

Remaining lingering subsurface oil residues from the Exxon Valdez oil spill (EVOS) are, at present, patchily distributed across the geologically complex and spatially extensive shorelines of Prince William Sound and the Gulf of Alaska. We review and synthesize previous literature describing the causal geomorphic and physical mechanisms for persistence of oil in the intertidal subsurface sediments of these areas. We also summarize previous sampling and modeling efforts, and refine previously presented models with additional data to characterize the present-day linear and areal spatial extent, and quantity of lingering subsurface oil. In the weeks after the spill in March of 1989, approximately 17,750 t of oil were stranded along impacted shorelines, and by October of 1992, only 2% of the mass of spilled oil was estimated to remain in intertidal areas. We estimate that lingering subsurface residues, generally between 5 and 20 cm thick and sequestered below 10-20 cm of clean sediment, are present over 30 ha of intertidal area, along 11.4 km of shoreline, and represent approximately 227 t or 0.6% of the total mass of spilled oil. These residues are typically located in finer-grained sand and gravel sediments, often under an armor of cobble- or boulder-sized clasts, in areas with limited groundwater flow and porosity. Persistence of these residues is correlated with heavy initial oil loading together with localized sheltering from physical disturbance such as wave energy within the beach face. While no longer generally bioavailable and increasingly chemically weathered, present removal rates for these remaining subsurface oil residues have slowed to nearly zero. The only remaining plausible removal mechanisms will operate over time scales of decades.

Geotechnical and Geoacoustic Investigation of Seafloor Sediments on Boston Harbor Approaches

DTIC Science & Technology

2017-01-25

Geoacoustic Investigation of Seafloor Sediments on Boston Harbor Approaches Andrei Abelev Marine Physics Branch Marine Geosciences Division Peter...LIMITATION OF ABSTRACT Geotechnical and Geoacoustic Investigation of Seafloor Sediments on Boston Harbor Approaches Andrei Abelev, Peter Herdic...sampling and analysis series for classification and characterization of the surficial seafloor sediment in the Boston Harbor approaches . 25-01-2017

Dissolution and analysis of amorphous silica in marine sediments.

USGS Publications Warehouse

Eggimann, D.W.; Manheim, F. T.; Betzer, P.R.

1980-01-01

The analytical estimation of amorphous silica in selected Atlantic and Antarctic Ocean sediments, the U.S.G.S. standard marine mud (MAG-1), A.A.P.G. clays, and samples from cultures of a marine diatom, Hemidiscus, has been examined. Our values for amorphous silica-rich circum-Antarctic sediments are equal to or greater than literature values, whereas our values for a set of amorphous silica-poor sediments from a transect of the N. Atlantic at 11oN, after appropriate correction for silica released from clays, are significantly lower than previous estimates from the same region. -from Authors

Tillage impact on herbicide loss by surface runoff and lateral subsurface flow

USDA-ARS?s Scientific Manuscript database

There is worldwide interest in conservation tillage practices because they can reduce surface runoff, agrichemical, and sediment loss from farm fields. Since these practices typically increase infiltration, their use may increase subsurface transport of water-soluble contaminants. Thus, to assess lo...

Quaternary magnetic excursions recorded in marine sediments.

NASA Astrophysics Data System (ADS)

Channell, J. E. T.

2017-12-01

This year is the golden (50th) anniversary of the first documentation of a magnetic excursion, the Laschamp excursion in volcanics from the Chaine des Puys (Bonhommet and Babkine, 1967). The first recording of an excursion in sediments was from the Blake Outer Ridge (Smith and Foster, 1969). Magnetic excursions are directional aberrations of the geomagnetic field apparently involving short-lived reversal of the main dipole field. They have durations of a few kyrs, and are therefore rarely recorded in sediments with mean sedimentation rates <10 cm/kyr. Certain Brunhes-aged excursions are now well documented having been recorded in both marine sediments and in lavas (Laschamp excursion, 41 ka). Other excursions have not been adequately recorded in lavas, but have been widely recorded in marine and lake sediments (Iceland Basin excursion, 190 ka). The recording of excursions is fortuitous both in lava sequences and in marine sediments due to their millennial/centennial-scale duration, however, the global recording of the Laschamp and Iceland Basin excursions imply that excursions involve the main dipole field, are recorded synchronously over the globe, and are therefore important in stratigraphic correlation. The marine sediment record includes magnetic excursions at 26 ka (Rockall), 32 ka (Mono Lake), 41 ka (Laschamp), 115 ka (Blake), 190 ka (Iceland Basin), 238 ka (Pringle Falls?), 286 ka (Portuguese Orphan), 495 ka (Bermuda), 540 ka (Big Lost), 590 ka (La Palma), and 670 ka (Osaka Bay), implying at least 11 excursions in the Brunhes Chron. For the Matuyama Chron, excursions have been recorded in marine sediments at 868 ka (Kamikatsura?), 932 ka (Santa Rosa), 1051 ka (Intra-Jaramillo), 1115 ka (Punaruu), 1255 ka (Bjorn), 1476 ka (Gardar), 1580 ka (Gilsa), and 2737 ka (Porcupine). Excursions coincide with minima in relative paleointensity (RPI) records. Ages are from correlation of excursion records to oxygen isotope records in the same cores, and ice-volume calibration of the oxygen isotope template. The marine sediment record of excursions, combined with independent documentation of excursions in lavas with Ar/Ar age control, is progressively strengthening our knowledge of the excursion inventory in the Quaternary, and enhancing the importance of excursions and RPI in Quaternary stratigraphy.

SORPTION OF NONIONIC SURFACTANT OLIGOMERS TO SEDIMENT AND PCE DNAPL: EFFECTS ON PCE DISTRIBUTION BETWEEN WATER AND SEDIMENT. (R826650)

EPA Science Inventory

Introduction of surfactant mixtures to the subsurface for the purpose of
surfactant-enhanced aquifer remediation requires consideration of the effects of
surfactant sorption to sediment and nonaqueous phase liquids. These effects
include alteration of the solubiliz...

Controlled Source Electromagnetic Monitoring of Hydraulic Fracturing: Wellbore and Fluid Effects

NASA Astrophysics Data System (ADS)

Couchman, M. J.; Everett, M. E.

2017-12-01

As unconventional resources become increasingly important, we must tackle the issue of real-time monitoring of the efficiency of unconventional hydrocarbon extraction. Controlled Source Electromagnetics (CSEM) have been used primarily as a marine-based technique to monitor conventional oil bearing reservoirs with a strong resurgence the new millennium. Many of these studies revolving around detecting a thin resistive layer such as a reservoir at 1m - 3km depth. In these cases, the presence of the resistive layer is characterized by a jump in electric field amplitude recorded at the boundary between the layer and the host sediments. The lessons learned from these studies can be applied to terrestrial unconventional settings with appropriate modifications. The work shown here is a means develop methods which enable more reliable terrestrial CSEM monitoring of the flow of injected fluids associated with hydraulic fracturing of unconventional reservoirs and to detect subsurface fluids based on their CSEM signature and in turn, to infer the subsurface flow of electrically conductive injected fluids. The predictive model validated for various 1-D marine, and terrestrial cases focus on the mapping of fluid flow in from a horizontal wellbore in a uniform halfspace using an in-line Horizontal Electric Dipole (HED) with electric field amplitude recorded by an array of electric field sensors. The effect of the of the vertical and horizontal wellbores are documented taking into account the conductivity, size, and thickness of each wellbore. The fracturing fluids flow and conductivity are also taken into account throughout various stages of the fracturing process. In each case, the sensitivity at a location of the surface in-line electric field to a given resistive or conductive layer, due to a source is calculated.

Bioremediation of marine oil spills: when and when not--the Exxon Valdez experience.

PubMed

Atlas, Ronald; Bragg, James

2009-03-01

In this article we consider what we have learned from the Exxon Valdez oil spill (EVOS) in terms of when bioremediation should be considered and what it can accomplish. We present data on the state of oiling of Prince William Sound shorelines 18 years after the spill, including the concentration and composition of subsurface oil residues (SSOR) sampled by systematic shoreline surveys conducted between 2002 and 2007. Over this period, 346 sediment samples were analysed by GC-MS and extents of hydrocarbon depletion were quantified. In 2007 alone, 744 sediment samples were collected and extracted, and 222 were analysed. Most sediment samples from sites that were heavily oiled by the spill and physically cleaned and bioremediated between 1989 and 1991 show no remaining SSOR. Where SSOR does remain, it is for the most part highly weathered, with 82% of 2007 samples indicating depletion of total polycyclic aromatic hydrocarbon (Total PAH) of >70% relative to EVOS oil. This SSOR is sequestered in patchy deposits under boulder/cobble armour, generally in the mid-to-upper intertidal zone. The relatively high nutrient concentrations measured at these sites, the patchy distribution and the weathering state of the SSOR suggest that it is in a form and location where bioremediation likely would be ineffective at increasing the rate of hydrocarbon removal. © 2009 The Authors. Journal compilation © 2009 Society for Applied Microbiology and Blackwell Publishing Ltd.

Apparatus investigates geological aspects of gas hydrates

USGS Publications Warehouse

Booth, J.S.; Winters, W.J.; Dillon, William P.

1999-01-01

The US Geological Survey (USGS), in response to potential geohazards, energy resource potential, and climate issues associated with marine gas hydrates, has developed a laboratory research system that permits hydrate genesis and dissociation under deep-sea conditions, employing user-selected sediment types and pore fluids.The apparatus, GHASTI (gas hydrate and sediment test laboratory instrument), provides a means to link field studies and theory and serves as a tool to improve gas hydrate recognition and assessment, using remote sensing techniques.GHASTLI's use was proven in an exploration well project led by the Geological Survey of Canada and the Japanese National Oil Corp., collaborating with Japan Petroleum Exploration Co. and the USGS. The site was in the Mackenzie Delta region of the Northwest Territories (Mallik 2L-38 drillsite).From tests on natural methane hydrate-bearing sand recovered at about 1,000 m subsurface, the in situ quantity of hydrate was estimated from acoustic properties, and a substantial increase in shear strength due to the presence of the hydrate was measured.1 2GHASTI can mimic a wide range of geologic settings and processes. Initial goals involve improved recognition and mapping of gas hydrate-bearing sediments, understanding factors that control the occurrence and concentration of gas hydrates, knowledge of hydrate's significance to slope failure and foundation problems, and analysis of gas hydrate's potential use as an energy resource.

ORGANIC CONTAMINANT DISTRIBUTION IN SEDIMENTS, POLYCHAETES (NEREIS VIRENS) AND THE AMERICAN LOBSTER, HOMARUS AMERICANUS IN A LABORATORY FOOD CHAIN EXPERIMENT

EPA Science Inventory

A laboratory experiment was conducted to investigate the transfer of organic contaminants from an environmentally contaminated marine sediment through a simple marine food chain. The infaunal polychaete, Nereis virens, was exposed to contaminated sediment collected from the Passa...

Evaluation of the Polyethylene Reverse Sampler as a Dosing System in Marine Phase II Whole Sediment Toxicity Identification Evaluations (TIEs)

EPA Science Inventory

Contaminated marine sediments can cause acute and chronic impairments to benthic organisms. Nonionic organic contaminants (NOCs) are often a primary cause of impairment. Toxicity Identification Evaluations (TIEs) are used to identify chemicals causing toxicity in sediments. Ph...

INTERLABORATORY COMPARISON OF A REDUCED VOLUME MARINE SEDIMENT TOXICITY TEST METHOD USING AMPHIPOD AMPELISCA ABDITA

EPA Science Inventory

The U.S. Environmental Protection Agency has standardized methods for performing acute marine amphipod sediment toxicity tests. A test design reducing sediment volume from 200 to 50 ml and overlying water from 600 to 150 ml was recently proposed. An interlaboratory comparison wa...

EVALUATION OF A FIRST-ORDER MODEL FOR THE PREDICTION OF THE BIOACCUMULATION OF PCBS AND DDT FROM SEDIMENT INTO THE MARINE DEPOSIT-FEEDING CLAM MACOMA NASUTA

EPA Science Inventory

A first-order model for predicting contaminant bioaccumulation from sediments into benthic invertebrates was validated using a marine deposit-feeding clam, Macoma nasuta, exposed to polychlorobiphenyl (PCB)-spiked and dichlorodiphenyltrichloroethane (DDT)-contaminated sediments. ...

EXPLORATORY ANALYSIS OF THE EFFECTS OF PARTICULATE CHARACTERISTICS ON THE VARIATION IN PARTITIONING OF NONPOLAR ORGANIC CONTAMINANTS TO MARINE SEDIMENTS

EPA Science Inventory

The partitioning of nonpolar organic contaminants to marine sediments is considered to be controlled by the amount of organic carbon present. However, several studies propose that other characteristics of sediments may affect the partitioning of contaminants. For this exploratory...

INFLUENCE OF SOOT CARBON ON THE BIOACCULUMATION OF SEDIMENT-BOUND POLYCYCLIC AROMATIC HYDROCARBONS BY MARINE BENTHIC INVERTEBRATES: AN INTERSPECIES COMPARISON

EPA Science Inventory

The sorption of polycyclic aromatic hydrocarbons (PAHs) to soot carbon in marine sediments has been hypothesized to reduce PAH bioavailability. This hypothesis was tested for eight species of marine benthic invertebrates (four polychaete worms, Clymenella torquata, Nereis virens,...

USE OF ULVA LACTUCA TO DISTINGUISH PH DEPENDENT TOXICANTS IN MARINE WATERS AND SEDIMENTS

EPA Science Inventory

Ulva lactuca (sea lettuce) is a cosmopolitan marine attached green seaweed capable of sequestering high environmental levels of ammonia. Ammonia can be acutely toxic to marine organisms and is often found in dredged sediments from highly industrial areas or from areas with high c...

Electrokinetic Transduction of Acoustic Waves In Ocean Sediments

DTIC Science & Technology

2002-09-30

acoustic —motion in ocean sediments. The Biot theory of poroelastic media captures much of the sediment physics left out by other models [2]. It fits...in subsurface acoustical imaging, Mine Counter- Measures, and Anti-Submarine Warfare. To obtain essential experimental data to support the modeling ...Electrokinetic Transduction of Acoustic Waves In Ocean Sediments Gareth I. Block Applied Research Laboratories, U.T. Austin P.O. Box 8029

Immobilization of U(VI) from Oxic Groundwater by Hanford 300 Area Sediments and Effects of Columbia River Water

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ahmed, B.; Cao, Bin; Mishra, Bhoopesh

2012-09-23

Regions within the U.S. Department of Energy Hanford 300 Area (300 A) site experience periodic hydrologic influences from the nearby Columbia River as a result of changing river stage, which causes changes in groundwater elevation, flow direction and water chemistry. An important question is the extent to which the mixing of Columbia River water and groundwater impacts the speciation and mobility of uranium (U). In this study, we designed experiments to mimic interactions among U, oxic groundwater or Columbia River water, and 300 A sediments in the subsurface environment of Hanford 300 A. The goals were to investigate mechanisms of:more » 1) U immobilization in 300 A sediments under bulk oxic conditions and 2) U remobilization from U-immobilized 300 A sediments exposed to oxic Columbia River water. Initially, 300 A sediments in column reactors were fed with U(VI)-containing oxic 1) synthetic groundwater (SGW), 2) organic-amended SGW (OA-SGW), and 3) de-ionized (DI) water to investigate U immobilization processes. After that, the sediments were exposed to oxic Columbia River water for U remobilization studies. The results reveal that U was immobilized by 300 A sediments predominantly through reduction (80-85%) when the column reactor was fed with oxic OA-SGW. However, U was immobilized by 300 A sediments through adsorption (100%) when the column reactors were fed with oxic SGW or DI water. The reduced U in the 300 A sediments fed with OA-SGW was relatively resistant to remobilization by oxic Columbia River water. Oxic Columbia River water resulted in U remobilization (~7%) through desorption, and most of the U that remained in the 300 A sediments fed with OA-SGW (~93%) was in the form of uraninite nanoparticles. These results reveal that: 1) the reductive immobilization of U through OA-SGW stimulation of indigenous 300 A sediment microorganisms may be viable in the relatively oxic Hanford 300 A subsurface environments and 2) with the intrusion of Columbia River water, desorption may be the primary process resulting in U remobilization from OA-SGW-stimulated 300 A sediments at the subsurface of the Hanford 300 A site.« less

Immobilization of cobalt by sulfate-reducing bacteria in subsurface sediments

USGS Publications Warehouse

Krumholz, Lee R.; Elias, Dwayne A.; Suflita, Joseph M.

2003-01-01

We investigated the impact of sulfate-reduction on immobilization of metals in subsurface aquifers. Co 2+ was used as a model for heavy metals. Factors limiting sulfate-reduction dependent Co 2+ immobilization were tested on pure cultures of sulfate-reducing bacteria, and in sediment columns from a landfill leachate contaminated aquifer. In the presence of 1 mM Co 2+ , the growth of pure cultures of sulfate-reducing bacteria was not impacted. Cultures of Desulfovibrio desulfuricans, Desulfotomaculum gibsoniae , and Desulfomicrobium hypogeia removed greater than 99.99% of the soluble Co 2+ when CoCl 2 was used with no chelators. The above cultures and Desulfoarcula baarsi removed 98-99.94% of the soluble Co(II) when the metal was complexed with the model ligand nitrilotriacetate (Co-NTA). Factors controlling the rate of sulfate-reduction based Co 2+ precipitation were investigated in sediment-cobalt mixtures. Several electron donors were tested and all but toluene accelerated soluble Co 2+ loss. Ethanol and formate showed the greatest stimulation. All complex nitrogen sources tested slowed and decreased the extent of Co 2+ removal from solution relative to formate-amended sediment incubations. A range of pH values were tested (6.35-7.81), with the more alkaline incubations exhibiting the largest precipitation of Co 2+ . The immobilization of Co 2+ in sediments was also investigated with cores to monitor the flow of Co 2+ through undisturbed sediments. An increase in the amount of Co 2+ immobilized as CoS was observed as sulfate reduction activity was stimulated in flow through columns. Both pure culture and sediment incubation data indicate that stimulation of sulfate reduction is a viable strategy in the immobilization of contaminating metals in subsurface systems.

Risk assessment of trace metals in an extreme environment sediment: shallow, hypersaline, alkaline, and industrial Lake Acıgöl, Denizli, Turkey.

PubMed

Budakoglu, Murat; Karaman, Muhittin; Kumral, Mustafa; Zeytuncu, Bihter; Doner, Zeynep; Yildirim, Demet Kiran; Taşdelen, Suat; Bülbül, Ali; Gumus, Lokman

2018-02-23

The major and trace element component of 48 recent sediment samples in three distinct intervals (0-10, 10-20, and 20-30 cm) from Lake Acıgöl is described to present the current contamination levels and grift structure of detrital and evaporate mineral patterns of these sediments in this extreme saline environment. The spatial and vertical concentrations of major oxides were not uniform in the each subsurface interval. However, similar spatial distribution patterns were observed for some major element couples, due mainly to the detrital and evaporate origin of these elements. A sequential extraction procedure including five distinct steps was also performed to determine the different bonds of trace elements in the < 60-μ particulate size of recent sediments. Eleven trace elements (Ni, Fe, Cd, Pb, Cu, Zn, As, Co, Cr, Al and Mn) in nine surface and subsurface sediment samples were analyzed with chemical partitioning procedures to determine the trace element percentage loads in these different sequential extraction phases. The obtained accuracy values via comparison of the bulk trace metal loads with the total loads of five extraction steps were satisfying for the Ni, Fe, Cd, Zn, and Co. While, bulk analysis results of the Cu, Ni, and V elements have good correlation with total organic matter, organic fraction of sequential extraction characterized by Cu, As, Cd, and Pb. Shallow Lake Acıgöl sediment is characteristic with two different redox layer a) oxic upper level sediments, where trace metals are mobilized, b) reduced subsurface level, where the trace metals are precipitated.

A small-scale, portable method for extracting microplastics from marine sediments.

PubMed

Coppock, Rachel L; Cole, Matthew; Lindeque, Penelope K; Queirós, Ana M; Galloway, Tamara S

2017-11-01

Microplastics (plastic particles, 0.1 μm-5 mm in size) are widespread marine pollutants, accumulating in benthic sediments and shorelines the world over. To gain a clearer understanding of microplastic availability to marine life, and the risks they pose to the health of benthic communities, ecological processes and food security, it is important to obtain accurate measures of microplastic abundance in marine sediments. To date, methods for extracting microplastics from marine sediments have been disadvantaged by complexity, expense, low extraction efficiencies and incompatibility with very fine sediments. Here we present a new, portable method to separate microplastics from sediments of differing types, using the principle of density floatation. The Sediment-Microplastic Isolation (SMI) unit is a custom-built apparatus which consistently extracted microplastics from sediments in a single step, with a mean efficiency of 95.8% (±SE 1.6%; min 70%, max 100%). Zinc chloride, at a density of 1.5 g cm -3 , was deemed an effective and relatively inexpensive floatation media, allowing fine sediment to settle whilst simultaneously enabling floatation of dense polymers. The method was validated by artificially spiking sediment with low and high density microplastics, and its environmental relevance was further tested by extracting plastics present in natural sediment samples from sites ranging in sediment type; fine silt/clay (mean size 10.25 ± SD 3.02 μm) to coarse sand (mean size 149.3 ± SD 49.9 μm). The method presented here is cheap, reproducible and is easily portable, lending itself for use in the laboratory and in the field, eg. on board research vessels. By employing this method, accurate estimates of microplastic type, distribution and abundance in natural sediments can be achieved, with the potential to further our understanding of the availability of microplastics to benthic organisms. Copyright © 2017 The Authors. Published by Elsevier Ltd.. All rights reserved.

The metatranscriptome of a deep-sea hydrothermal plume is dominated by water column methanotrophs and lithotrophs

PubMed Central

Lesniewski, Ryan A; Jain, Sunit; Anantharaman, Karthik; Schloss, Patrick D; Dick, Gregory J

2012-01-01

Microorganisms mediate geochemical processes in deep-sea hydrothermal vent plumes, which are a conduit for transfer of elements and energy from the subsurface to the oceans. Despite this important microbial influence on marine geochemistry, the ecology and activity of microbial communities in hydrothermal plumes is largely unexplored. Here, we use a coordinated metagenomic and metatranscriptomic approach to compare microbial communities in Guaymas Basin hydrothermal plumes to background waters above the plume and in the adjacent Carmen Basin. Despite marked increases in plume total RNA concentrations (3–4 times) and microbially mediated manganese oxidation rates (15–125 times), plume and background metatranscriptomes were dominated by the same groups of methanotrophs and chemolithoautotrophs. Abundant community members of Guaymas Basin seafloor environments (hydrothermal sediments and chimneys) were not prevalent in the plume metatranscriptome. De novo metagenomic assembly was used to reconstruct genomes of abundant populations, including Marine Group I archaea, Methylococcaceae, SAR324 Deltaproteobacteria and SUP05 Gammaproteobacteria. Mapping transcripts to these genomes revealed abundant expression of genes involved in the chemolithotrophic oxidation of ammonia (amo), methane (pmo) and sulfur (sox). Whereas amo and pmo gene transcripts were abundant in both plume and background, transcripts of sox genes for sulfur oxidation from SUP05 groups displayed a 10–20-fold increase in plumes. We conclude that the biogeochemistry of Guaymas Basin hydrothermal plumes is mediated by microorganisms that are derived from seawater rather than from seafloor hydrothermal environments such as chimneys or sediments, and that hydrothermal inputs serve as important electron donors for primary production in the deep Gulf of California. PMID:22695860

The metatranscriptome of a deep-sea hydrothermal plume is dominated by water column methanotrophs and lithotrophs.

PubMed

Lesniewski, Ryan A; Jain, Sunit; Anantharaman, Karthik; Schloss, Patrick D; Dick, Gregory J

2012-12-01

Microorganisms mediate geochemical processes in deep-sea hydrothermal vent plumes, which are a conduit for transfer of elements and energy from the subsurface to the oceans. Despite this important microbial influence on marine geochemistry, the ecology and activity of microbial communities in hydrothermal plumes is largely unexplored. Here, we use a coordinated metagenomic and metatranscriptomic approach to compare microbial communities in Guaymas Basin hydrothermal plumes to background waters above the plume and in the adjacent Carmen Basin. Despite marked increases in plume total RNA concentrations (3-4 times) and microbially mediated manganese oxidation rates (15-125 times), plume and background metatranscriptomes were dominated by the same groups of methanotrophs and chemolithoautotrophs. Abundant community members of Guaymas Basin seafloor environments (hydrothermal sediments and chimneys) were not prevalent in the plume metatranscriptome. De novo metagenomic assembly was used to reconstruct genomes of abundant populations, including Marine Group I archaea, Methylococcaceae, SAR324 Deltaproteobacteria and SUP05 Gammaproteobacteria. Mapping transcripts to these genomes revealed abundant expression of genes involved in the chemolithotrophic oxidation of ammonia (amo), methane (pmo) and sulfur (sox). Whereas amo and pmo gene transcripts were abundant in both plume and background, transcripts of sox genes for sulfur oxidation from SUP05 groups displayed a 10-20-fold increase in plumes. We conclude that the biogeochemistry of Guaymas Basin hydrothermal plumes is mediated by microorganisms that are derived from seawater rather than from seafloor hydrothermal environments such as chimneys or sediments, and that hydrothermal inputs serve as important electron donors for primary production in the deep Gulf of California.

The Ability of Microbial Community of Lake Baikal Bottom Sediments Associated with Gas Discharge to Carry Out the Transformation of Organic Matter under Thermobaric Conditions

PubMed Central

Bukin, Sergei V.; Pavlova, Olga N.; Manakov, Andrei Y.; Kostyreva, Elena A.; Chernitsyna, Svetlana M.; Mamaeva, Elena V.; Pogodaeva, Tatyana V.; Zemskaya, Tamara I.

2016-01-01

The ability to compare the composition and metabolic potential of microbial communities inhabiting the subsurface sediment in geographically distinct locations is one of the keys to understanding the evolution and function of the subsurface biosphere. Prospective areas for study of the subsurface biosphere are the sites of hydrocarbon discharges on the bottom of the Lake Baikal rift, where ascending fluxes of gas-saturated fluids and oil from deep layers of bottom sediments seep into near-surface sediment. The samples of surface sediments collected in the area of the Posolskaya Bank methane seep were cultured for 17 months under thermobaric conditions (80°C, 5 MPa) with the addition of complementary organic substrate, and a different composition for the gas phase. After incubation, the presence of intact cells of microorganisms, organic matter transformation and the formation of oil biomarkers was confirmed in the samples, with the addition of Baikal diatom alga Synedra acus detritus, and gas mixture CH4:H2:CO2. Taxonomic assignment of the 16S rRNA sequence data indicates that the predominant sequences in the enrichment were Sphingomonas (55.3%), Solirubrobacter (27.5%) and Arthrobacter (16.6%). At the same time, in heat-killed sediment and in sediment without any additional substrates, which were cultivated in a CH4 atmosphere, no geochemical changes were detected, nor the presence of intact cells and 16S rRNA sequences of Bacteria and Archaea. This data may suggest that the decomposition of organic matter under culturing conditions could be performed by microorganisms from low-temperature sediment layers. One possible explanation of this phenomenon is migration of the representatives of the deep thermophilic community through fault zones in the near surface sediment layers, together with gas-bearing fluids. PMID:27242716

The Ability of Microbial Community of Lake Baikal Bottom Sediments Associated with Gas Discharge to Carry Out the Transformation of Organic Matter under Thermobaric Conditions.

PubMed

Bukin, Sergei V; Pavlova, Olga N; Manakov, Andrei Y; Kostyreva, Elena A; Chernitsyna, Svetlana M; Mamaeva, Elena V; Pogodaeva, Tatyana V; Zemskaya, Tamara I

2016-01-01

The ability to compare the composition and metabolic potential of microbial communities inhabiting the subsurface sediment in geographically distinct locations is one of the keys to understanding the evolution and function of the subsurface biosphere. Prospective areas for study of the subsurface biosphere are the sites of hydrocarbon discharges on the bottom of the Lake Baikal rift, where ascending fluxes of gas-saturated fluids and oil from deep layers of bottom sediments seep into near-surface sediment. The samples of surface sediments collected in the area of the Posolskaya Bank methane seep were cultured for 17 months under thermobaric conditions (80°C, 5 MPa) with the addition of complementary organic substrate, and a different composition for the gas phase. After incubation, the presence of intact cells of microorganisms, organic matter transformation and the formation of oil biomarkers was confirmed in the samples, with the addition of Baikal diatom alga Synedra acus detritus, and gas mixture CH4:H2:CO2. Taxonomic assignment of the 16S rRNA sequence data indicates that the predominant sequences in the enrichment were Sphingomonas (55.3%), Solirubrobacter (27.5%) and Arthrobacter (16.6%). At the same time, in heat-killed sediment and in sediment without any additional substrates, which were cultivated in a CH4 atmosphere, no geochemical changes were detected, nor the presence of intact cells and 16S rRNA sequences of Bacteria and Archaea. This data may suggest that the decomposition of organic matter under culturing conditions could be performed by microorganisms from low-temperature sediment layers. One possible explanation of this phenomenon is migration of the representatives of the deep thermophilic community through fault zones in the near surface sediment layers, together with gas-bearing fluids.

Fluvial processes on Mars: Erosion and sedimentation

NASA Technical Reports Server (NTRS)

Squyres, Steven W.

1988-01-01

One of the most important discoveries of the Mariner 9 and Viking missions to Mars was evidence of change of the Martian surface by the action of liquid water. From the standpoint of a Mars Rover/Sample Return Mission, fluvial activity on Mars is important in two ways: (1) channel formation has deeply eroded the Martian crust, providing access to relatively undisturbed subsurface units; and (2) much of the material eroded from channels may have been deposited in standing bodies of liquid water. The most striking fluvial erosion features on Mars are the outflow channels. A second type of channel apparently caused by flow of liquid water is the valley systems. These are similar to terrestial drainage systems. The sedimentary deposits of outflow channels are often difficult to identfy. No obvious deposits such as deltaic accumulations are visible in Viking images. Another set of deposits that may be water lain and that date approx. from the epoch of outflow channels are the layered deposits in the Valles Marineris. From the standpoint of a Mars Rover/Sample Return mission, the problem with all of these water-lain sediments is their age, or rather the lack of it.

Subsurface Nitrogen-Cycling Microbial Communities at Uranium Contaminated Sites in the Colorado River Basin

NASA Astrophysics Data System (ADS)

Cardarelli, E.; Bargar, J.; Williams, K. H.; Dam, W. L.; Francis, C.

2015-12-01

Throughout the Colorado River Basin (CRB), uranium (U) persists as a relic contaminant of former ore processing activities. Elevated solid-phase U levels exist in fine-grained, naturally-reduced zone (NRZ) sediments intermittently found within the subsurface floodplain alluvium of the following Department of Energy-Legacy Management sites: Rifle, CO; Naturita, CO; and Grand Junction, CO. Coupled with groundwater fluctuations that alter the subsurface redox conditions, previous evidence from Rifle, CO suggests this resupply of U may be controlled by microbially-produced nitrite and nitrate. Nitrification, the two-step process of archaeal and bacterial ammonia-oxidation followed by bacterial nitrite oxidation, generates nitrate under oxic conditions. Our hypothesis is that when elevated groundwater levels recede and the subsurface system becomes anoxic, the nitrate diffuses into the reduced interiors of the NRZ and stimulates denitrification, the stepwise anaerobic reduction of nitrate/nitrite to dinitrogen gas. Denitrification may then be coupled to the oxidation of sediment-bound U(IV) forming mobile U(VI), allowing it to resupply U into local groundwater supplies. A key step in substantiating this hypothesis is to demonstrate the presence of nitrogen-cycling organisms in U-contaminated, NRZ sediments from the upper CRB. Here we investigate how the diversity and abundances of nitrifying and denitrifying microbial populations change throughout the NRZs of the subsurface by using functional gene markers for ammonia-oxidation (amoA, encoding the α-subunit of ammonia monooxygenase) and denitrification (nirK, nirS, encoding nitrite reductase). Microbial diversity has been assessed via clone libraries, while abundances have been determined through quantitative polymerase chain reaction (qPCR), elucidating how relative numbers of nitrifiers (amoA) and denitrifiers (nirK, nirS) vary with depth, vary with location, and relate to uranium release within NRZs in sediment cores spanning the upper CRB. Early findings from Rifle, CO indicate elevated abundances of ammonia-oxidizers seem to correlate with elevated uranium concentrations emphasizing the critical need to understand how nitrogen-cycling organisms influence subsurface U redox chemistry and mobility.

Immune response of greenback flounder Rhombosolea tapirina after exposure to contaminated marine sediment and diet.

PubMed

Mondon, J A; Duda, S; Nowak, B F

2000-01-01

Non-specific immune response of greenback flounder, Rhombosolea tapirina, exposed to contaminated marine sediments was examined. Reference sediments from Port Sorell and contaminated sediments from Deceitful Cove, Tasmania, Australia were investigated. Hatchery-reared flounder were exposed to reference sediment, contaminated sediment or contaminated sediment and diet for 6 weeks. Phagocytic capacity and lysozyme response in flounder were examined on cessation of exposure trial. Significant differences were found in phagocytic capacity and lysozyme response between treatments. Exposure to contaminated sediment, irrespective of diet or benthic disturbance elicited inhibition of phagocytic efficiency in flounder. Disturbance of contaminated sediment stimulated lysozyme activity. The immune response in flounder indicates potential immunotoxicity of sediment from Deceitful Cove.

Use of neutralized industrial residue to stabilize trace elements (Cu, Cd, Zn, As, Mo, and Cr) in marine dredged sediment from South-East of France.

PubMed

Taneez, Mehwish; Marmier, Nicolas; Hurel, Charlotte

2016-05-01

Management of marine dredged sediments polluted with trace elements is prime issue in the French Mediterranean coast. The polluted sediments possess ecological threats to surrounding environment on land disposal. Therefore, stabilization of contaminants in multi-contaminated marine dredged sediment is a promising technique. Present study aimed to assess the effect of gypsum neutralized bauxaline(®) (bauxite residue) to decrease the availability of pollutants and inherent toxicity of marine dredged sediment. Bauxaline(®), (alumia industry waste) contains high content of iron oxide but its high alkalinity makes it not suitable for the stabilization of all trace elements from multi-contaminated dredged sediments. In this study, neutralized bauxaline(®) was prepared by mixing bauxaline(®) with 5% of plaster. Experiments were carried out for 3 months to study the effect of 5% and 20% amendment rate on the availability of Cu, Cd, Zn, As, Mo, and Cr. Trace elements concentration, pH, EC and dissolved organic carbon were measured in all leachates. Toxicity of leachates was assessed against marine rotifers Brachionus plicatilis. The Results showed that both treatments have immobilization capacity against different pollutants. Significant stabilization of contaminants (Cu, Cd, Zn) was achieved with 20% application rate whereas As, Mo, and Cr were slightly stabilized. Toxicity results revealed that leachates collected from treated sediment were less toxic than the control sediment. These results suggest that application of neutralized bauxaline(®) to dredged sediment is an effective approach to manage large quantities of dredged sediments as well as bauxite residue itself. Copyright © 2016 Elsevier Ltd. All rights reserved.

Optimizing sample pretreatment for compound-specific stable carbon isotopic analysis of amino sugars in marine sediment

NASA Astrophysics Data System (ADS)

Zhu, R.; Lin, Y.-S.; Lipp, J. S.; Meador, T. B.; Hinrichs, K.-U.

2014-01-01

Amino sugars are quantitatively significant constituents of soil and marine sediment, but their sources and turnover in environmental samples remain poorly understood. The stable carbon isotopic composition of amino sugars can provide information on the lifestyles of their source organisms and can be monitored during incubations with labeled substrates to estimate the turnover rates of microbial populations. However, until now, such investigation has been carried out only with soil samples, partly because of the much lower abundance of amino sugars in marine environments. We therefore optimized a procedure for compound-specific isotopic analysis of amino sugars in marine sediment employing gas chromatography-isotope ratio mass spectrometry. The whole procedure consisted of hydrolysis, neutralization, enrichment, and derivatization of amino sugars. Except for the derivatization step, the protocol introduced negligible isotopic fractionation, and the minimum requirement of amino sugar for isotopic analysis was 20 ng, i.e. equivalent to ~ 8 ng of amino sugar carbon. Our results obtained from δ13C analysis of amino sugars in selected marine sediment samples showed that muramic acid had isotopic imprints from indigenous bacterial activities, whereas glucosamine and galactosamine were mainly derived from organic detritus. The analysis of stable carbon isotopic compositions of amino sugars opens a promising window for the investigation of microbial metabolisms in marine sediments and the deep marine biosphere.

Biostratigraphy and paleoecology of the Burdigalian-Serravallian sediments in Wadi Sudr (Gulf of Suez, Egypt): comparison with the Central Paratethys evolution

NASA Astrophysics Data System (ADS)

Ied, Ibrahim M.; Holcová, Katarína; Abd-Elshafy, Ezzat

2011-06-01

Two main Miocene facies were recorded in the Gulf of Suez area: a deep marine and a coastal facies. The analysed sections in the Wadi Sudr area belong to the marine facies. The Lower Miocene (Burdigalian) is represented by coastal, shallow marine sediments, rich in coral, algae, gastropods and large pectinids followed by Langhian open marine sediments and Serravallian lagoonal carbonates. The open marine sediments contain well preserved planktonic and benthic foraminifers and abundant ostracods. The parts of the sections containing foraminifers have been correlated with three planktonic foraminiferal zones (Praeorbulina glomerosa Zone, Orbulina Zone and Globorotalia praemenardii-Globorotalia peripheroronda Zone). Two benthic ecozones were defined (Heterolepa dutemplei-Laevidentalina elegans Zone and Bolivina compressa-Elphidium spp. Zone). Two cycles of sea-level changes can be distinguished and correlated with global sea-level cycles Bur5/Lan1 and Ser1. The first (Langhian) cycle culminated in open marine sublittoral to upper bathyal well aerated sediments. The second (Serravallian) cycle was shallower, littoral suboxic sediments were overlaid by euryhaline carbonates. The studied foraminifera-bearing sediments can be correlated with the lower and Middle Badenian of the Central Paratethys. Though the area of the Gulf of Suez and the Central Paratethys were situated in different climatic zones, and influenced by different tectonic events, the main paleoenvironmental events (sea-level changes, oxygen decrease, salinity changes) are comparable. This correspondence shows that the decisive factors triggering these events were global climatic events.

Paleogeography of the upper Paleozoic basins of southern South America: An overview

NASA Astrophysics Data System (ADS)

Limarino, Carlos O.; Spalletti, Luis A.

2006-12-01

The paleogeographic evolution of Late Paleozoic basins located in southern South America is addressed. Three major types of basins are recognized: infracratonic or intraplate, arc-related, and retroarc. Intraplate basins (i.e., Paraná, Chaco-Paraná, Sauce Grande-Colorado, and La Golondrina) are floored by continental or quasi-continental crust, with low or moderate subsidence rates and limited magmatic and tectonic activity. Arc-related basins (northern and central Chile, Navidad-Arizaro, Río Blanco, and Calingasta-Uspallata basins and depocenters along Chilean Patagonia) show a very complex tectonic history, widespread magmatic activity, high subsidence rates, and in some cases metamorphism of Late Paleozoic sediments. An intermediate situation corresponds to the retroarc basins (eastern Madre de Dios, Tarija, Paganzo, and Tepuel-Genoa), which lack extensive magmatism and metamorphism but in which coeval tectonism and sedimentation rates were likely more important than those in the intraplate region. According to the stratigraphic distribution of Late Paleozoic sediments, regional-scale discontinuities, and sedimentation pattern changes, five major paleogeographic stages are proposed. The lowermost is restricted to the proto-Pacific and retroarc basins, corresponds to the Mississippian (stage 1), and is characterized by shallow marine and transitional siliciclastic sediments. During stage 2 (Early Pennsylvanian), glacial-postglacial sequences dominated the infracratonic (or intraplate) and retroarc basins, and terrigenous shallow marine sediments prevailed in arc-related basins. Stage 3 (Late Pennsylvanian-Early Cisuralian) shows the maximum extension of glacial-postglacial sediments in the Paraná and Sauce Grande-Colorado basins (intraplate region), whereas fluvial deposits interfingering with thin intervals of shallow marine sediments prevailed in the retroarc basins. To the west, arc-related basins were dominated by coastal to deep marine conditions (including turbiditic successions). In the Late Cisuralian (stage 4), important differences in sedimentation patterns are registered for the western arc-related basins and eastern intraplate basins. The former were locally dominated by volcaniclastic sediments or marine deposits, and the intraplate basins are characterized by shallow marine conditions punctuated by several episodes of deltaic progradation. Finally, in the Late Permian (stage 5), volcanism and volcaniclastic sedimentation dominated in basins located along the western South American margin. The intraplate basins in turn were characterized by T-R cycles composed of shallow marine, deltaic, and fluvial siliciclastic deposits.

Anthropogenic activities have contributed moderately to increased inputs of organic materials in marginal seas off China.

PubMed

Liu, Liang-Ying; Wei, Gao-Ling; Wang, Ji-Zhong; Guan, Yu-Feng; Wong, Charles S; Wu, Feng-Chang; Zeng, Eddy Y

2013-10-15

Sediment has been recognized as a gigantic sink of organic materials and therefore can record temporal input trends. To examine the impact of anthropogenic activities on the marginal seas off China, sediment cores were collected from the Yellow Sea, the inner shelf of the East China Sea (ECS), and the South China Sea (SCS) to investigate the sources and spatial and temporal variations of organic materials, i.e., total organic carbon (TOC) and aliphatic hydrocarbons. The concentration ranges of TOC were 0.5-1.29, 0.63-0.83, and 0.33-0.85%, while those of Σn-C14-35 (sum of n-alkanes with carbon numbers of 14-35) were 0.08-1.5, 0.13-1.97, and 0.35-0.96 μg/g dry weight in sediment cores from the Yellow Sea, ECS inner shelf, and the SCS, respectively. Terrestrial higher plants were an important source of aliphatic hydrocarbons in marine sediments off China. The spatial distribution of Σn-C14-35 concentrations and source diagnostic ratios suggested a greater load of terrestrial organic materials in the Yellow Sea than in the ECS and SCS. Temporally, TOC and Σn-C14-35 concentrations increased with time and peaked at either the surface or immediate subsurface layers. This increase was probably reflective of elevated inputs of organic materials to marginal seas off China in recent years, and attributed partly to the impacts of intensified anthropogenic activities in mainland China. Source diagnostics also suggested that aliphatic hydrocarbons were mainly derived from biogenic sources, with a minority in surface sediment layers from petroleum sources, consistent with the above-mentioned postulation.

Harvesting energy from the marine sediment--water interface.

PubMed

Reimers, C E; Tender, L M; Fertig, S; Wang, W

2001-01-01

Pairs of platinum mesh or graphite fiber-based electrodes, one embedded in marine sediment (anode), the other in proximal seawater (cathode), have been used to harvest low-level power from natural, microbe established, voltage gradients at marine sediment-seawater interfaces in laboratory aquaria. The sustained power harvested thus far has been on the order of 0.01 W/m2 of electrode geometric area but is dependent on electrode design, sediment composition, and temperature. It is proposed that the sediment/anode-seawater/cathode configuration constitutes a microbial fuel cell in which power results from the net oxidation of sediment organic matter by dissolved seawater oxygen. Considering typical sediment organic carbon contents, typical fluxes of additional reduced carbon by sedimentation to sea floors < 1,000 m deep, and the proven viability of dissolved seawater oxygen as an oxidant for power generation by seawater batteries, it is calculated that optimized power supplies based on the phenomenon demonstrated here could power oceanographic instruments deployed for routine long-term monitoring operations in the coastal ocean.

Microbial Community Responses to Organophosphate Substrate Additions in Contaminated Subsurface Sediments

PubMed Central

Martinez, Robert J.; Wu, Cindy H.; Beazley, Melanie J.; Andersen, Gary L.; Conrad, Mark E.; Hazen, Terry C.; Taillefert, Martial; Sobecky, Patricia A.

2014-01-01

Background Radionuclide- and heavy metal-contaminated subsurface sediments remain a legacy of Cold War nuclear weapons research and recent nuclear power plant failures. Within such contaminated sediments, remediation activities are necessary to mitigate groundwater contamination. A promising approach makes use of extant microbial communities capable of hydrolyzing organophosphate substrates to promote mineralization of soluble contaminants within deep subsurface environments. Methodology/Principal Findings Uranium-contaminated sediments from the U.S. Department of Energy Oak Ridge Field Research Center (ORFRC) Area 2 site were used in slurry experiments to identify microbial communities involved in hydrolysis of 10 mM organophosphate amendments [i.e., glycerol-2-phosphate (G2P) or glycerol-3-phosphate (G3P)] in synthetic groundwater at pH 5.5 and pH 6.8. Following 36 day (G2P) and 20 day (G3P) amended treatments, maximum phosphate (PO4 3−) concentrations of 4.8 mM and 8.9 mM were measured, respectively. Use of the PhyloChip 16S rRNA microarray identified 2,120 archaeal and bacterial taxa representing 46 phyla, 66 classes, 110 orders, and 186 families among all treatments. Measures of archaeal and bacterial richness were lowest under G2P (pH 5.5) treatments and greatest with G3P (pH 6.8) treatments. Members of the phyla Crenarchaeota, Euryarchaeota, Bacteroidetes, and Proteobacteria demonstrated the greatest enrichment in response to organophosphate amendments and the OTUs that increased in relative abundance by 2-fold or greater accounted for 9%–50% and 3%–17% of total detected Archaea and Bacteria, respectively. Conclusions/Significance This work provided a characterization of the distinct ORFRC subsurface microbial communities that contributed to increased concentrations of extracellular phosphate via hydrolysis of organophosphate substrate amendments. Within subsurface environments that are not ideal for reductive precipitation of uranium, strategies that harness microbial phosphate metabolism to promote uranium phosphate precipitation could offer an alternative approach for in situ sequestration. PMID:24950228

Biodegradation of crude oil in Arctic subsurface water from the Disko Bay (Greenland) is limited.

PubMed

Scheibye, Katrine; Christensen, Jan H; Johnsen, Anders R

2017-04-01

Biological degradation is the main process for oil degradation in a subsurface oil plume. There is, however, little information on the biodegradation potential of Arctic, marine subsurface environments. We therefore investigated oil biodegradation in microcosms at 2 °C containing Arctic subsurface seawater from the Disko Bay (Greenland) and crude oil at three concentrations of 2.5-10 mg/L. Within 71 days, the total petroleum hydrocarbon concentration decreased only by 18 ± 18% for an initial concentration of 5 mg/L. The saturated alkanes nC13-nC30 and the isoprenoids iC18-iC21 were biodegraded at all concentrations indicating a substantial potential for biodegradation of these compound classes. Polycyclic aromatic compounds (PACs) disappeared from the oil phase, but dissolution was the main process of removal. Analysis of diagnostic ratios indicated almost no PAC biodegradation except for the C1-naphthalenes. To conclude, the marine subsurface microorganisms from the Disko Bay had the potential for biodegradation of n-alkanes and isoprenoids while the metabolically complex and toxic PACs and their alkylated homologs remained almost unchanged. Copyright © 2016 Elsevier Ltd. All rights reserved.

SHORT-EXPOSURE, SUBLETHAL, SEDIMENT TOXICITY TEST USING THE MARINE BIVALVE MULINIA LATERALIS: STATISTICAL DESIGN AND COMPARATIVE SENSITIVITY

EPA Science Inventory

Over the last 10 years a great deal of research effort has concentrated on determining the effects of contaminated sediments on aquatic organisms. or marine systems, this effort has emphasized acute sediment toxicity tests using amphipods, although a variety of other end points a...

Speciation of butyltin compounds in marine sediments with headspace solid phase microextraction and gas chromatography mass spectrometry.

PubMed

Cardellicchio, N; Giandomenico, S; Decataldo, A; Di Leo, A

2001-03-01

A method for the determination of organotin compounds (monobutyl = MBT, dibutyl = DBT, and tributyltin = TBT) in marine sediments by headspace Solid Phase Microextraction (SPME) has been developed. The analytical procedure involved 1) extraction of TBT, DBT and MBT from sediments with HCl and methanol mixture, 2) in situ derivatization with sodium tetraethylborate and 3) headspace SPME extraction using a fiber coated with poly(dimethylsiloxane). The derivatized organotin compounds were desorbed into the splitless injector and simultaneously analyzed by gas chromatography - mass spectrometry. The analytical method was optimized with respect to derivatization reaction and extraction conditions. The detection limits obtained for MBT, DBT and TBT ranged from 730 to 969 pg/g as Sn dry weight. Linear calibration curves were obtained for all analytes in the range of 30-1000 ng/L as Sn. Analysis of a standard reference sediment (CRM 462) demonstrates the suitability of this method for the determination of butyltin compounds in marine sediments. The application to the determination of TBT, DBT and MBT in a coastal marine sediment is shown.

High abundance of JS-1- and Chloroflexi-related Bacteria in deeply buried marine sediments revealed by quantitative, real-time PCR.

PubMed

Blazejak, Anna; Schippers, Axel

2010-05-01

Sequences of members of the bacterial candidate division JS-1 and the classes Anaerolineae and Caldilineae of the phylum Chloroflexi are frequently found in 16S rRNA gene clone libraries obtained from marine sediments. Using a newly designed quantitative, real-time PCR assay, these bacterial groups were jointly quantified in samples from near-surface and deeply buried marine sediments from the Peru margin, the Black Sea, and a forearc basin off the island of Sumatra. In near-surface sediments, sequences of the JS-1 as well as Anaerolineae- and Caldilineae-related Bacteria were quantified with significantly lower 16S rRNA gene copy numbers than the sequences of total Bacteria. In contrast, in deeply buried sediments below approximately 1 m depth, similar quantities of the 16S rRNA gene copies of these specific groups and Bacteria were found. This finding indicates that JS-1 and Anaerolineae- and Caldilineae-related Bacteria might dominate the bacterial community in deeply buried marine sediments and thus seem to play an important ecological role in the deep biosphere.

Bacterial communities in sediment of a Mediterranean marine protected area.

PubMed

Catania, Valentina; Sarà, Gianluca; Settanni, Luca; Quatrini, Paola

2017-04-01

Biodiversity is crucial in preservation of ecosystems, and bacterial communities play an indispensable role for the functioning of marine ecosystems. The Mediterranean marine protected area (MPA) "Capo Gallo-Isola delle Femmine" was instituted to preserve marine biodiversity. The bacterial diversity associated with MPA sediment was compared with that from sediment of an adjacent harbour exposed to intense nautical traffic. The MPA sediment showed higher diversity with respect to the impacted site. A 16S rDNA clone library of the MPA sediment allowed the identification of 7 phyla: Proteobacteria (78%), Firmicutes (11%), Acidobacteria (3%), Actinobacteria (3%), Bacteroidetes (2%), Planctomycetes (2%), and Cyanobacteria (1%). Analysis of the hydrocarbon (HC)-degrading bacteria was performed using enrichment cultures. Most of the MPA sediment isolates were affiliated with Gram-positive G+C rich bacteria, whereas the majority of taxa in the harbour sediment clustered with Alpha- and Gammaproteobacteria; no Gram-positive HC degraders were isolated from the harbour sediment. Our results show that protection probably has an influence on bacterial diversity, and suggest the importance of monitoring the effects of protection at microbial level as well. This study creates a baseline of data that can be used to assess changes over time in bacterial communities associated with a Mediterranean MPA.

Chronology of Fluctuating Sea Levels since the Triassic

NASA Astrophysics Data System (ADS)

Haq, Bilal U.; Hardenbol, Jan; Vail, Peter R.

1987-03-01

Advances in sequence stratigraphy and the development of depositional models have helped explain the origin of genetically related sedimentary packages during sea level cycles. These concepts have provided the basis for the recognition of sea level events in subsurface data and in outcrops of marine sediments around the world. Knowledge of these events has led to a new generation of Mesozoic and Cenozoic global cycle charts that chronicle the history of sea level fluctuations during the past 250 million years in greater detail than was possible from seismic-stratigraphic data alone. An effort has been made to develop a realistic and accurate time scale and widely applicable chronostratigraphy and to integrate depositional sequences documented in public domain outcrop sections from various basins with this chronostratigraphic frame-work. A description of this approach and an account of the results, illustrated by sea level cycle charts of the Cenozoic, Cretaceous, Jurassic, and Triassic intervals, are presented.

In situ Detection of Microbial Life in the Deep Biosphere in Igneous Ocean Crust

PubMed Central

Salas, Everett C.; Bhartia, Rohit; Anderson, Louise; Hug, William F.; Reid, Ray D.; Iturrino, Gerardo; Edwards, Katrina J.

2015-01-01

The deep biosphere is a major frontier to science. Recent studies have shown the presence and activity of cells in deep marine sediments and in the continental deep biosphere. Volcanic lavas in the deep ocean subsurface, through which substantial fluid flow occurs, present another potentially massive deep biosphere. We present results from the deployment of a novel in situ logging tool designed to detect microbial life harbored in a deep, native, borehole environment within igneous oceanic crust, using deep ultraviolet native fluorescence spectroscopy. Results demonstrate the predominance of microbial-like signatures within the borehole environment, with densities in the range of 105 cells/mL. Based on transport and flux models, we estimate that such a concentration of microbial cells could not be supported by transport through the crust, suggesting in situ growth of these communities. PMID:26617595

DOE Office of Scientific and Technical Information (OSTI.GOV)

Haq, B.U.; Hardenbol, J.; Vail, P.R.

Advances in sequence stratigraphy and the development of depositional models have helped explain the origin of genetically related sedimentary packages during sea level cycles. These concepts have provided the basis for the recognition of sea level events in subsurface data and in outcrops of marine sediments around the world. Knowledge of these events has led to a new generation of Mesozoic and Cenozoic global cycle charts that chronicle the history of sea level fluctuations during the past 250 million years in greater detail than was possible from seismic-stratigraphic data alone. An effort has been made to develop a realistic andmore » accurate time scale and widely applicable chronostratigraphy and to integrate depositional sequences documented in public domain outcrop sections from various basins with this chronostratigraphic framework. A description of this approach and an account of the results, illustrated by sea level cycle charts of the Cenozoic, Cretaceous, Jurassic, and Triassic intervals, are presented.« less

Transport of microplastics in coastal seas

NASA Astrophysics Data System (ADS)

Zhang, Hua

2017-12-01

Microplastic pollution of the marine environment has received increasing attention from scientists, the public, and policy makers over the last few years. Marine microplastics predominantly originate near the coast and can remain in the nearshore zone for some time. However, at present, there is little understanding of the fate and transport of microplastics in coastal regions. This paper provides a comprehensive overview of the physical processes involved in the movement of microplastics from estuaries to the continental shelf. The trajectory and speed of microplastics are controlled by their physical characteristics (density, size, and shape) and ocean dynamic conditions (wind, waves, tides, thermohaline gradients, and the influence of benthic sediments). Microplastic particles can be subjected to beaching, surface drifting, vertical mixing, and biofouling, as well as bed-load and suspended load transport processes, until reaching terminal deposition on beaches, in coastal marshes, in benthic sediments or until they are carried by ocean currents to subtropical convergence zones. The dynamic interaction of released microplastics with the shoreline is regulated by onshore/offshore transport, which is impacted by the source location as well as the geometry, vegetation, tidal regime, and wave direction. Wind and wave conditions dominate surface drifting of buoyant particles through Ekman drift, windage, and Stokes drift mechanisms. Neustic microplastic particles travel in the subsurface because of vertical mixing through wind-driven Langmuir circulation and heat cycling. Increasing accumulation of microplastics in benthic sediments needs to be quantitatively explored in terms of biofouling, deposition, entrainment, and transport dynamics. Further studies are required to understand the following: 1) the primary parameters (e.g., windage, terminal velocity, diffusivity, critical shear stress) that determine microplastic transport in different pathways; 2) dynamic distribution of microplastics in various coastal landscapes (e.g., wetlands, beaches, estuaries, lagoons, barrier islands, depocenters) regulated by hydrodynamic conditions; and 3) interactions between the physical transport processes and biochemical reactions (degradation, flocculation, biofouling, ingestions).

Poroelastic Parameters of Peru Margin Sediments: Implications for Flow and Transport at Multiple Scales in the Marine Biosphere

NASA Astrophysics Data System (ADS)

Gettemy, G. L.; Cikoski, C.; Tobin, H. J.

2004-12-01

As part of a broader investigation of the deep marine subsurface environment, the first biosphere-focused drilling expedition, Leg 201, of the Ocean Drilling Program (ODP) occupied five unique sites in the Peru Margin (in a 1200 km2 region centered at 10 S, 80E). These sites represent the entire range of shallow biogeological conditions associated with this convergent margin:deep-water, mixed clay-pelagic sediments ocean-ward of the trench; slope-apron and prism toe sediments at the deformation front; and several distinct lithostratigraphic sequences on the continental shelf. Microbial enumeration and pore-water geochemistry results show that each particular site is both consistent and unique--consistent in terms of general biotic quantity and activity as predicted by energy flux and redox potential given the depositional environment and sedimentary record, but unique at key biogeological boundaries such as lithologic and/or physical property interfaces. This research addresses questions related to our understanding of how and why these boundaries form by looking at poroelastic and hydrologic parameters measured at multiple scales, from sub-millimeter to several centimeters. The issue of measurement scale, especially in regard to permeability and diffusivity characterization, is vital to interpreting observations of biologically-mediated diagenetic fronts (e.g., dolomitic lenses, depth- or time-varying barite fronts). These parameters are derived from (i) hydrologic and wave propagation experiments, (ii) SEM images, and (iii) shipboard split-core measurements, and structured in a modified Biot poroelasticity framework. This approach also allows quantification of the local heterogeneity of these parameters at the scale applicable to (and controlled by) microbial life; these results can then be used to formulate predictive models of the impact of biogeochemical processes. Ultimately, these models could then be used in interpretation of new remote-sensed data (e.g., from borehole tools, high-frequency backscatter devices), a fundamental challenge for all types of biospheric imaging everywhere.

Authigenic Carbonate Fans from Lower Jurassic Marine Shales (Alberta, Canada)

NASA Astrophysics Data System (ADS)

Martindale, R. C.; Them, T. R., II; Gill, B. C.; Knoll, A. H.

2016-12-01

Authigenic aragonite seafloor fans are a common occurrence in Archean and Paleoproterozoic carbonates, as well as Neoproterozoic cap carbonates. Similar carbonate fans are rare in Phanerozoic strata, with the exception of two mass extinction events; during the Permo-Triassic and Triassic-Jurassic boundaries, carbonate fans formed at the sediment-water interface and within the sediment, respectively. These crystal fans have been linked to carbon cycle perturbations at the end of the Permian and Triassic periods driven by rapid flood volcanism. The Early Jurassic Toarcian Ocean Anoxic Event (T-OAE) is also correlated with the emplacement of a large igneous province, but biological consequences were more modest. We have identified broadly comparable fibrous calcite layers (2-10 cm thick) in Pliensbachian-Toarcian cores from Alberta, Canada. This work focuses on the geochemical and petrographic description of these fans and surrounding sediment in the context of the T-OAE. At the macroscale, carbonates exhibit a fan-like (occasionally cone-in-cone) structure and displace the sediment around them as they grew. At the microscale, the carbonate crystals (pseudomorphs of aragonite) often initiate on condensed horizons or shells. Although they grow in multiple directions (growth within the sediment), the predominant crystal growth direction is towards the sediment-water interface. Resedimentation of broken fans is evidence that crystal growth was penecontemporaneous with sedimentation. The carbon isotope composition of the fans (transects up bladed crystals) and elemental abundances within the layers support shallow subsurface, microbially mediated growth. The resemblance of these Early Jurassic fibrous calcite layers to those found at the end-Triassic and their paucity in the Phanerozoic record suggest that analogous processes occurred at both events. Nevertheless, the Pliensbachian-Toarcian carbonate fans occur at multiple horizons and while some are within the T-OAE, others are significantly above and below the event. The formation of these authigenic layers cannot be driven exclusively by the geochemical and paleoenvironmental changes during the T-OAE. Therefore, a new model of formation for the Early Jurassic carbonate fans is required.

Pre-aged plant waxes in tropical lake sediments and their influence on the chronology of molecular paleoclimate proxy records

NASA Astrophysics Data System (ADS)

Douglas, Peter M. J.; Pagani, Mark; Eglinton, Timothy I.; Brenner, Mark; Hodell, David A.; Curtis, Jason H.; Ma, Keith F.; Breckenridge, Andy

2014-09-01

Sedimentary records of plant-wax hydrogen (δDwax) and carbon (δ13Cwax) stable isotopes are increasingly applied to infer past climate change. Compound-specific radiocarbon analyses, however, indicate that long time lags can occur between the synthesis of plant waxes and their subsequent deposition in marginal marine sediments. The influence of these time lags on interpretations of plant-wax stable isotope records is presently unconstrained, and it is unclear whether such time lags also affect lacustrine sediments. We present compound-specific radiocarbon (14Cwax) data for n-alkanoic acid plant waxes (n-C26 to n-C32) from: (1) a sediment core from Lake Chichancanab, Yucatan Peninsula, Mexico, (2) soils in the Lake Chichancanab catchment, and (3) surface sediments from three other lakes in southeastern Mexico and northern Guatemala. 14Cwax ages in the surface sediments are consistently older than modern, and may be negatively correlated with mean annual precipitation and positively correlated with lake catchment area. 14Cwax ages in soils surrounding Lake Chichancanab increase with soil depth, consistent with deep, subsoil horizons being the primary source of lacustrine aged plant waxes, which are likely delivered to lake sediments through subsurface transport. Plant waxes in the Lake Chichancanab core are 350-1200 years older than corresponding ages of bulk sediment deposition, determined by 14C dates on terrestrial plant macrofossils in the core. A δDwax time series is in closer agreement with other regional proxy hydroclimate records when a plant-wax 14C age model is applied, as opposed to the macrofossil-based core chronology. Inverse modeling of plant-wax age distribution parameters suggests that plant waxes in the Lake Chichancanab sediment core derive predominantly from millennial-age soil carbon pools that exhibit relatively little age variance (<200 years). Our findings demonstrate that high-temporal-resolution climate records inferred from stable isotope measures on plant waxes in lacustrine sediments may suffer from possible chronologic distortions as a consequence of long residence times of plant waxes in soils. They also underscore the importance of direct radiocarbon dating of these organic molecules.

Paired measurements of K and Mg isotopes and clay authigenesis in marine sediments

NASA Astrophysics Data System (ADS)

Santiago Ramos, D. P.; Dunlea, A. G.; Higgins, J. A.

2016-12-01

Despite its importance as a major sink for seawater K and Mg, estimates of clay authigenesis in marine sediments remain poorly constrained. Previous work on Mg isotope fractionation during clay formation has revealed a preferential uptake of 26Mg, yielding authigenic clay products with potentially distinct δ26Mg compared to the detrital component. In a similar manner, we aim to quantify the K isotope fractionation during authigenic clay formation and to use paired δ26Mg and δ41K measurements as proxies for the identification and quantification of authigenic clays in shallow and deep marine sedimentary systems. To better understand the behavior of paired Mg and K isotopes during authigenic clay formation in marine sediments, we measured δ26Mg and δ41K values of pore-fluids and sediments from ODP/IODP sites 1052, U1395, U1403 and U1366. We find that while pore-fluid K concentrations at sites 1052, U1395 and U1403 all decline with depth, δ41K profiles differ significantly. These differences might be a result of a complex interplay between clay authigenesis, sedimentation rate, and fractionation of K isotopes during diffusion. Results from 1-D diffusion-advection-reaction models suggest that, in contrast to Mg, diffusion may play an important role in determining the overall K isotope fractionation during clay authigenesis in sites with low-sedimentation rates. Sites with high sedimentation rates may act as close systems where diffusion is negligible. In such cases, K uptake can be modeled as a Rayleigh distillation process and K isotope fractionation can be estimated. Measurements of δ26Mg and δ41K of pore-fluids from site U1395 and bulk sediments from U1366 suggest that paired measurements of these isotopic systems in siliciclastic marine sediments can provide new insights into rates of marine clay authigenesis, a globally important but understudied component of many geochemical cycles.

Three depositional states and sedimentary processes of the western Taiwan foreland basin system

NASA Astrophysics Data System (ADS)

Lin, Yi-Jung; Wu, Pei-Jen; Yu, Ho-Shing

2010-05-01

The western Taiwan foreland basin formed during the Early Pliocene as the flexural response to the loading of Taiwan orogen on the Eurasian plate. What makes Taiwan interesting is the oblique collision, which allows the foreland basin to be seen at different stages in its evolution at the present day. Due to oblique arc-continent collision from north to south, the western Taiwan foreland basin has evolved into three distinct subbasins: an over-filled basin proximal to the Taiwan orogen, mainly distributed in the Western Foothills and Coastal Plain provinces, a filled basin occupying the shallow Taiwan Strait continental shelf west of the Taiwan orogen and an under-filled basin distal to the Taiwan orogen in the deep marine Kaoping Slope offshore southwest Taiwan, respectively. The over-filled depositional phase is dominated by fluvial environments across the structurally controlled piggy-back basins. The filled depositional state in the Taiwan Strait is characterized by shallow marine environments and is filled by Pliocene-Quaternary sediments up to 4,000 m thick derived from the Taiwan orogen with an asymmetrical and wedge-shaped cross section. The under-filled depositional state is characteristic of deep marine environments in the wedge-top basins accompanied by active structures of thrust faults and mud diapers. Sediments derived from the Taiwan orogen have progressively filled the western Taiwan foreland basin across and along the orogen. Sediment dispersal model suggests that orogenic sediments derived from oblique dischronous collisional highlands are transported in two different ways. Transport of fluvial and shallow marine sediments is perpendicular to hill-slope and across-strike in the fluvial and shallow marine environments proximal to the orogen. Fine-grained sediments mainly longitudinally transported into the deep marine environments distal to the orogen. The present sedimentary processes in the over-filled basin on land are dominated by fluvial processes of small mountainous rivers. Tidal currents are prevalent in the filled basin in Taiwan Strait, transporting shelf sands and forming sand ridges. The deep marine under-filled basin are dominated by down-slope mass wasting processes, eroding slope strata and transporting sediments to the basin floor. In addition, many submarine canyons on the continental slope offshore southwest Taiwan serve as major sediment pathways, delivering shallow marine sediments to the basin floor.

Deep subsurface microbial processes

USGS Publications Warehouse

Lovley, D.R.; Chapelle, F.H.

1995-01-01

Information on the microbiology of the deep subsurface is necessary in order to understand the factors controlling the rate and extent of the microbially catalyzed redox reactions that influence the geophysical properties of these environments. Furthermore, there is an increasing threat that deep aquifers, an important drinking water resource, may be contaminated by man's activities, and there is a need to predict the extent to which microbial activity may remediate such contamination. Metabolically active microorganisms can be recovered from a diversity of deep subsurface environments. The available evidence suggests that these microorganisms are responsible for catalyzing the oxidation of organic matter coupled to a variety of electron acceptors just as microorganisms do in surface sediments, but at much slower rates. The technical difficulties in aseptically sampling deep subsurface sediments and the fact that microbial processes in laboratory incubations of deep subsurface material often do not mimic in situ processes frequently necessitate that microbial activity in the deep subsurface be inferred through nonmicrobiological analyses of ground water. These approaches include measurements of dissolved H2, which can predict the predominant microbially catalyzed redox reactions in aquifers, as well as geochemical and groundwater flow modeling, which can be used to estimate the rates of microbial processes. Microorganisms recovered from the deep subsurface have the potential to affect the fate of toxic organics and inorganic contaminants in groundwater. Microbial activity also greatly influences 1 the chemistry of many pristine groundwaters and contributes to such phenomena as porosity development in carbonate aquifers, accumulation of undesirably high concentrations of dissolved iron, and production of methane and hydrogen sulfide. Although the last decade has seen a dramatic increase in interest in deep subsurface microbiology, in comparison with the study of other habitats, the study of deep subsurface microbiology is still in its infancy.

Radioecologycal study of {sup 239/240}Pu in Bangka Island and Muria Peninsula: Determination of {sup 239/240}Pu in marine sediment and seawater as part of baseline data collecting for sitting of candidates of first Indonesia NPP

DOE Office of Scientific and Technical Information (OSTI.GOV)

Suseno, Heny, E-mail: henis@batan.go.id; Wisnubroto, Djarot S.

Radioisotope Pu-239/240 are alpha emitting nuclides important indicators of radioactive contamination of the marine environment. Global fallout is the main source of plutonium in the marine environment. There are very limited study on {sup 239/240}Pu in Indonesia coastal environments. The data of this radioisotopes is needed for baseline data of nuclear power plant (NPP) site candidates both in Bangka Island and Muria Peninsula. Bottom sediments play an important role in radioecological studies of the marine environment because a large proportion of radioactive substances entering the sea is adsorbed over time onto suspended particulate matter and deposited in sediments. Plutonium ismore » particle reactive and deposited in marine sediment. Radioisotope {sup 239/240}Pu was determinated by alpha spectrometry after radiochemical procedure that was performed in both water and marine sediment from Bangka Island and Muria Peninsula. The sediment baseline of concentration {sup 239/240}Pu in Bangka Island and Muria Peninsula were range from 0.013 to 0.021 Bq.kg{sup −1} and 0.018 to 0.024 Bq.kg{sup −1} respectively. The water baseline concentration this isotope were range from 2.73 to 4.05 mBq.m{sup −3} and 2.98 to 4.50 mBq.m{sup −3}.« less

Phosphorus sorption on marine carbonate sediment: phosphonate as model organic compounds.

PubMed

Huang, Xiao-Lan; Zhang, Jia-Zhong

2011-11-01

Organophosphonate, characterized by the presence of a stable, covalent, carbon to phosphorus (C-P) bond, is a group of synthetic or biogenic organophosphorus compounds. The fate of these organic phosphorus compounds in the environment is not well studied. This study presents the first investigation on the sorption of phosphorus (P) in the presence of two model phosphonate compounds, 2-aminothylphosphonoic acid (2-AEP) and phosphonoformic acid (PFA), on marine carbonate sediments. In contrast to other organic P compounds, no significant inorganic phosphate exchange was observed in seawater. P was found to adsorb on the sediment only in the presence of PFA, not 2-AEP. This indicated that sorption of P from phosphonate on marine sediment was compound specific. Compared with inorganic phosphate sorption on the same sediments, P sorption from organic phosphorus is much less in the marine environment. Further study is needed to understand the potential role of the organophosphonate compounds in biogeochemical cycle of phosphorus in the environment. Copyright © 2011 Elsevier Ltd. All rights reserved.

Aromatic-degrading Sphingomonas isolates from the deep subsurface

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fredrickson, J.K.; Romine, M.F.; Balkwill, D.L.

An obligately aerobic chemoheterotrophic bacterium (strain F199) previously isolated from Southeast Coastal Plain subsurface sediments and shown to degrade toluene, naphthalene, and other aromatic compounds was characterized by analysis of its 16S rRNA nucleotide base sequence and cellular lipid composition. Strain F199 contained 2-OH14:0 and 18:1{omega}7c as the predominant cellular fatty acids and sphingolipids that are characteristic of the genus Sphingomonas. Phylogenetic analysis of its 16SrRNA sequence indicated that F199 was most closely related to Sphingomonas capsulata among the bacteria currently in the Ribosomal Database. Five additional isolates from deep Southeast Coastal Plain sediments were determined by 16S rRNA sequencemore » analysis to be closely related to F199. These strains also contained characteristic sphingolipids. Four of these five strains could also grow on a broad range of aromatic compounds and could mineralize [{sup 14C}]toluene and [{sup 14C}]naphthalene. S. capsulata (ATCC 14666), Sphingomonas paucimobiolis (ATCC 29837), and one of the subsurface isolates were unable to grow on any of the aromatic compounds or mineralize toluene or naphthalene. These results indicate that bacteria within the genus Sphingomonas are present in Southeast Coastal Plain subsurface sediments and that the capacity for degrading a broad range of substituted aromatic compounds appears to be common among Sphingomonas species from this environment. 41 refs., 2 figs., 5 tabs.« less

Application of ground-penetrating radar methods in determining hydrogeologic conditions in a karst area, west-central Florida

USGS Publications Warehouse

Barr, G.L.

1993-01-01

Ground-penetrating radar (GPR) is useful as a surface geophysical method for exploring geology and subsurface features in karst settings. Interpretation of GPR data was used to infer lithology and hydrogeologic conditions in west-central Florida. This study demonstrates how GPR methods can be used to investigate the hydrogeology of an area. GPR transmits radio- frequency electromagnetic waves into the ground and receives reflected energy waves from subsurface interfaces. Subsurface profiles showing sediment thickness, depth to water table and clay beds, karst development, buried objects, and lake-bottom structure were produced from GPR traverses obtained during December 1987 and March 1990 in Pinellas, Hillsborough, and Hardee Counties in west-central Florida. Performance of the GPR method is site specific, and data collected are principally affected by the sediment and pore fluids, conductances and dielectric constants. Effective exploration depths of the GPR surveys through predominately unsaturated and saturated sand and clay sediments at five study sites ranged from a few feet to greater than 50 feet below land surface. Exploration depths were limited when high conductivity clay was encountered, whereas greater exploration depths were possible in material composed of sand. Application of GPR is useful in profiling subsurface conditions, but proper interpretation depends upon the user's knowledge of the equipment and the local hydrogeological setting, as well as the ability to interpret the graphic profile.

Applications of ichnology to hydrogeology, with examples from the Cape Fear Formation (Cretaceous), South Carolina

DOE Office of Scientific and Technical Information (OSTI.GOV)

Martin, A.J.; Simones, G.C.

Ichnology, the study of modern and ancient traces left by organisms, has provided supplemental information to geologic subdisciplines such as sedimentology and stratigraphy. The major objective of the authors paper is to emphasize the valuable information that can be conveyed by trace fossils in the investigation of hydrogeologic units. Bioturbation has a net effect of mixing different types and layers of sediments, such as introducing clays into sands and vice versa. This mixing can decrease porosity and permeability of sandy units, thus changing potential aquifers into confining units. For example, a sandy fluvial deposit will contain distinctive nonmarine trace fossils,more » thus defining channel sands that may serve as permeable conduits for ground-water flow. In contrast, a sandy shelf deposit will contain marine trace fossils in a sand body geometry that will be markedly different from aquifers produced in nonmarine environments. Bioturbation also causes geochemical and diagenetic changes in sediments, causing irrigation of previously anoxic sediments and precipitation of ion oxides. The Cretaceous Cape Fear Formation of the Atlantic Coastal Plain, in the subsurface of South Carolina, is presented as an example of a hydrogeologic unit that has been reinterpreted using ichnologic data. Extensive bioturbation caused mixing of clays and sands in Cape Fear sediments, which resulted in the Cape Fear becoming a regional confining system. Trace fossil assemblages indicate a brackish water environment, perhaps estuarine, for the Cape Fear, as opposed to previous interpretations of fluvial and deltaic environments. Bioturbated zones also have significantly more oxidized iron than unbioturbated zones, highlighting potential effects on ground-water quality.« less

Offshore Extension of Deccan Traps in Kachchh, Central Western India: Implications for Geological Sequestration Studies

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pandey, D. K., E-mail: pandey@ncaor.org; Pandey, A.; Rajan, S.

2011-03-15

The Deccan basalts in central western India are believed to occupy large onshore-offshore area. Using geophysical and geological observations, onshore sub-surface structural information has been widely reported. On the contrary, information about offshore structural variations has been inadequate due to scarcity of marine geophysical data and lack of onshore-offshore lithological correlations. Till date, merely a few geophysical studies are reported that gauge about the offshore extent of Deccan Traps and the Mesozoic sediments (pre-Deccan). To fill this gap in knowledge, in this article, we present new geophysical evidences to demonstrate offshore continuation of the Deccan volcanics and the Mesozoic sediments.more » The offshore multi-channel seismic and onshore-offshore lithological correlations presented here confirm that the Mesozoic sedimentary column in this region is overlain by 0.2-1.2-km-thick basaltic cover. Two separate phases of Mesozoic sedimentation, having very distinctive physical and lithological characteristics, are observed between overlying basaltic rocks and underlying Precambrian basement. Using onshore-offshore seismic and borehole data this study provides new insight into the extent of the Deccan basalts and the sub-basalt structures. This study brings out a much clearer picture than that was hitherto available about the offshore continuation of the Deccan Traps and the Mesozoic sediments of Kachchh. Further, its implications in identifying long-term storage of anthropogenic CO{sub 2} within sub-basalt targets are discussed. The carbon sequestration potential has been explored through the geological assessment in terms of the thickness of the strata as well as lithology.« less

Trace element storage capacity of sediments in dead Posidonia oceanica mat from a chronically contaminated marine ecosystem.

PubMed

Di Leonardo, Rossella; Mazzola, Antonio; Cundy, Andrew B; Tramati, Cecilia Doriana; Vizzini, Salvatrice

2017-01-01

Posidonia oceanica mat is considered a long-term bioindicator of contamination. Storage and sequestration of trace elements and organic carbon (C org ) were assessed in dead P. oceanica mat and bare sediments from a highly polluted coastal marine area (Augusta Bay, central Mediterranean). Sediment elemental composition and sources of organic matter have been altered since the 1950s. Dead P. oceanica mat displayed a greater ability to bury and store trace elements and C org than nearby bare sediments, acting as a long-term contaminant sink over the past 120 yr. Trace elements, probably associated with the mineral fraction, were stabilized and trapped despite die-off of the overlying P. oceanica meadow. Mat deposits registered historic contamination phases well, confirming their role as natural archives for recording trace element trends in marine coastal environments. This sediment typology is enriched with seagrass-derived refractory organic matter, which acts mainly as a diluent of trace elements. Bare sediments showed evidence of inwash of contaminated sediments via reworking; more rapid and irregular sediment accumulation; and, because of the high proportions of labile organic matter, a greater capacity to store trace elements. Through different processes, both sediment typologies represent a repository for chemicals and may pose a risk to the marine ecosystem as a secondary source of contaminants in the case of sediment dredging or erosion. Environ Toxicol Chem 2017;36:49-58. © 2016 SETAC. © 2016 SETAC.

Archaeal community diversity and abundance changes along a natural salinity gradient in estuarine sediments.

PubMed

Webster, Gordon; O'Sullivan, Louise A; Meng, Yiyu; Williams, Angharad S; Sass, Andrea M; Watkins, Andrew J; Parkes, R John; Weightman, Andrew J

2015-02-01

Archaea are widespread in marine sediments, but their occurrence and relationship with natural salinity gradients in estuarine sediments is not well understood. This study investigated the abundance and diversity of Archaea in sediments at three sites [Brightlingsea (BR), Alresford (AR) and Hythe (HY)] along the Colne Estuary, using quantitative real-time PCR (qPCR) of 16S rRNA genes, DNA hybridization, Archaea 16S rRNA and mcrA gene phylogenetic analyses. Total archaeal 16S rRNA abundance in sediments were higher in the low-salinity brackish sediments from HY (2-8 × 10(7) 16S rRNA gene copies cm(-3)) than the high-salinity marine sites from BR and AR (2 × 10(4)-2 × 10(7) and 4 × 10(6)-2 × 10(7) 16S rRNA gene copies cm(-3), respectively), although as a proportion of the total prokaryotes Archaea were higher at BR than at AR or HY. Phylogenetic analysis showed that members of the 'Bathyarchaeota' (MCG), Thaumarchaeota and methanogenic Euryarchaeota were the dominant groups of Archaea. The composition of Thaumarchaeota varied with salinity, as only 'marine' group I.1a was present in marine sediments (BR). Methanogen 16S rRNA genes from low-salinity sediments at HY were dominated by acetotrophic Methanosaeta and putatively hydrogentrophic Methanomicrobiales, whereas the marine site (BR) was dominated by mcrA genes belonging to methylotrophic Methanococcoides, versatile Methanosarcina and methanotrophic ANME-2a. Overall, the results indicate that salinity and associated factors play a role in controlling diversity and distribution of Archaea in estuarine sediments. © The Author 2014. Published by Oxford University Press on behalf of Federation of European Microbiological Society.

Global rates of marine sulfate reduction and implications for sub-sea-floor metabolic activities

NASA Astrophysics Data System (ADS)

Bowles, Marshall W.; Mogollón, José M.; Kasten, Sabine; Zabel, Matthias; Hinrichs, Kai-Uwe

2014-05-01

Sulfate reduction is a globally important redox process in marine sediments, yet global rates are poorly quantified. We developed an artificial neural network trained with 199 sulfate profiles, constrained with geomorphological and geochemical maps to estimate global sulfate-reduction rate distributions. Globally, 11.3 teramoles of sulfate are reduced yearly (~15% of previous estimates), accounting for the oxidation of 12 to 29% of the organic carbon flux to the sea floor. Combined with global cell distributions in marine sediments, these results indicate a strong contrast in sub-sea-floor prokaryote habitats: In continental margins, global cell numbers in sulfate-depleted sediment exceed those in the overlying sulfate-bearing sediment by one order of magnitude, whereas in the abyss, most life occurs in oxic and/or sulfate-reducing sediments.

Structural characteristics of fulvic acids from Continental Shelf sediments

USGS Publications Warehouse

Hatcher, P.G.; Breger, I.A.; Mattingly, M.A.

1980-01-01

Fulvic acids are those components of soil organic matter that remain soluble after a dilute alkaline extract of the soil is acidified to pH 2 (refs 1, 2). This extraction procedure has been applied to marine sediments, and the organic compounds so recovered have been called marine sedimentary fulvic acids. These fulvic acids are thought to form more complex humic substances in marine sediments by condensation reactions3. However, the chemical structural compositions of marine fulvic acids have not been defined sufficiently to allow this precursor relationship to be made. Here NMR spectroscopy is used to identify more clearly the chemical structural components of some marine sedimentary fulvic acids, thus enabling a more useful examination of their relationship to more complex humic substances. ?? 1980 Nature Publishing Group.

Estimating Surface/Subsurface Sediment Mixing in Karst Settings Using 7Be Isotopes

NASA Astrophysics Data System (ADS)

Wicks, C. M.; Paylor, R. L.; Bentley, S. J.

2018-03-01

This study shows that the cosmogenic radionuclide beryllium-7 can be used to track sediment movement through caves. The activities of beryllium-7 and cesium-137 were measured in two different karst settings at both surface and subsurface sites before and after storm runoff events. At one site, 7Be-enriched sediment was detected up to 1.5 km along a stream conduit after a moderate storm event; however, the activity of 137Cs was too variable to show a meaningful pattern. The percentages of surface sediment that was found ranged from 0 to 52% along the entire 3 km cave stream and from 33 to 52% along the upper 1.5 km. At the other site, as much as 96% of the sediment initially discharged at the spring during a storm event was fresh surface material that had traveled into and through the cave stream. Moreover, during the 4 day runoff event, approximately 23% of the total suspended sediment flux was estimated to originate from surface erosion with 78% being reworked sediment from within the cave. The data in this study show that cosmogenic radionuclides with multiyear half-lives are too long-lived to track sediment origins in the caves; whereas, 7Be with a 53.2 day half-life, can be used to track movement of sediment along cave streams.

Isotopic identification of the source of methane in subsurface sediments of an area surrounded by waste disposal facilities

USGS Publications Warehouse

Hackley, Keith C.; Liu, Chao-Li; Trainor, D.

1999-01-01

The major source of methane (CH4) in subsurface sediments on the property of a former hazardous waste treatment facility was determined using isotopic analyses measured on CH4 and associated groundwater. The site, located on an earthen pier built into a shallow wetland lake, has had a history of waste disposal practices and is surrounded by landfills and other waste management facilities. Concentrations of CH4 up to 70% were found in the headspace gases of several piezometers screened at 3 different depths (ranging from 8 to 17 m) in lacustrine and glacial till deposits. Possible sources of the CH4 included a nearby landfill, organic wastes from previous impoundments and microbial gas derived from natural organic matter in the sediments. Isotopic analyses included ??13C, ??D, 14C, and 3H on select CH4 samples and ??D and ??18O on groundwater samples. Methane from the deepest glacial till and intermediate lacustrine deposits had ??13C values from -79 to -82???, typical of natural 'drift gas' generated by microbial CO2-reduction. The CH4 from the shallow lacustrine deposits had ??13C values from -63 to -76???, interpreted as a mixture between CH4 generated by microbial fermentation and the CO2-reduction processes within the subsurface sediments. The ??D values of all the CH4 samples were quite negative ranging from -272 to -299???. Groundwater sampled from the deeper zones also showed quite negative ??D values that explained the light ??D observed for the CH4. Radiocarbon analyses of the CH4 showed decreasing 14C activity with depth, from a high of 58 pMC in the shallow sediments to 2 pMC in the deeper glacial till. The isotopic data indicated the majority of CH4 detected in the fill deposits of this site was microbial CH4 generated from naturally buried organic matter within the subsurface sediments. However, the isotopic data of CH4 from the shallow piezometers was more variable and the possibility of some mixing with oxidized landfill CH4 could not be completely ruled out.

Sulfur and iron cycling in deep-subsurface, coal bed-containing sediments off Shimokita (Japan)

NASA Astrophysics Data System (ADS)

Riedinger, N.; Smirnoff, M. N.; Gilhooly, W.; Phillips, S. C.; Lyons, T. W.; 337 Scientific Party, I.

2013-12-01

The main goal of IODP Expedition 337 was the identification and characterization of the deep coal bed biosphere and hydrocarbon system off the Shimokita Peninsula (Japan) in the northwestern Pacific using the D/V Chikyu. To accomplish this scientific objective, it was also necessary to investigate the inorganic biogeochemistry in order to identify possible electron acceptors and bio-essential nutrients. These biogeochemical parameters greatly influence both, the composition and abundance of microbial communities as well as the organic carbon cycle. In turn, the microbially mediated carbon cycle influences the diagenetic reactions in the subsurface, thus, altering geochemical and physical characteristics of the material. Here we present results from metal and sulfur geochemical analyses from the deep-subsurface sediments (about 1250 to 2466 mbsf) at Site C0020 off Shimokita. The measured concentrations of acid volatile sulfur (AVS) as well as chromium reducible sulfur (CRS) reflect the alteration of iron oxides to iron sulfides and indicate that the main sulfur-bearing phase in the investigated sediments is pyrite. Concentrations of intermediate sulfur species are minor and occur mainly in the coal-bearing interval. Our data show that the uppermost sediments contain higher amounts of pyrite (up to 1.2 wt.%) with an average of 0.5 wt.% compared to the deeper deposits (below about 1800 mbsf), which show an average of 0.16 wt.%. In contrast, iron oxide concentrations are highest in the deeper sediment sections (up to 0.4%), where pyrite concentrations are low. The alteration of iron oxides to sulfides in theses lower section was probably governed by the amount of available sulfide in the pore water. The occurrence of (bio-)reactive iron phases in these deeply buried sediments has implications for the deep biosphere as those minerals have the potential to serve as electron acceptors during burial, including reactions involving deep sourced electron donors, such as hydrogen and methane - related to the coal bed as the potential source. Thus, the deep subsurface coal beds off Shimokita provide an ideal environment to investigate microbial and metal interactions under extreme conditions.

MOBILIZATION AND CHARACTERIZATION OF COLLOIDS GENERATED FROM CEMENT LEACHATES MOVING THROUGH A SRS SANDY SEDIMENT

DOE Office of Scientific and Technical Information (OSTI.GOV)

Li, D.; Roberts, K.; Kaplan, D.

Naturally occurring mobile colloids are ubiquitous and are involved in many important processes in the subsurface zone. For example, colloid generation and subsequent mobilization represent a possible mechanism for the transport of contaminants including radionuclides in the subsurface environments. For colloid-facilitated transport to be significant, three criteria must be met: (1) colloids must be generated; (2) contaminants must associate with the colloids preferentially to the immobile solid phase (aquifer); and (3) colloids must be transported through the groundwater or in subsurface environments - once these colloids start moving they become 'mobile colloids'. Although some experimental investigations of particle release inmore » natural porous media have been conducted, the detailed mechanisms of release and re-deposition of colloidal particles within natural porous media are poorly understood. Even though this vector of transport is known, the extent of its importance is not known yet. Colloid-facilitated transport of trace radionuclides has been observed in the field, thus demonstrating a possible radiological risk associated with the colloids. The objective of this study was to determine if cementitious leachate would promote the in situ mobilization of natural colloidal particles from a SRS sandy sediment. The intent was to determine whether cementitious surface or subsurface structure would create plumes that could produce conditions conducive to sediment dispersion and mobile colloid generation. Column studies were conducted and the cation chemistries of influents and effluents were analyzed by ICP-OES, while the mobilized colloids were characterized using XRD, SEM, EDX, PSD and Zeta potential. The mobilization mechanisms of colloids in a SRS sandy sediment by cement leachates were studied.« less

Rapid bacterial colonization of low-density polyethylene microplastics in coastal sediment microcosms.

PubMed

Harrison, Jesse P; Schratzberger, Michaela; Sapp, Melanie; Osborn, A Mark

2014-09-23

Synthetic microplastics (≤5-mm fragments) are emerging environmental contaminants that have been found to accumulate within coastal marine sediments worldwide. The ecological impacts and fate of microplastic debris are only beginning to be revealed, with previous research into these topics having primarily focused on higher organisms and/or pelagic environments. Despite recent research into plastic-associated microorganisms in seawater, the microbial colonization of microplastics in benthic habitats has not been studied. Therefore, we employed a 14-day microcosm experiment to investigate bacterial colonization of low-density polyethylene (LDPE) microplastics within three types of coastal marine sediment from Spurn Point, Humber Estuary, U.K. Bacterial attachment onto LDPE within sediments was demonstrated by scanning electron microscopy and catalyzed reporter deposition fluorescence in situ hybridisation (CARD-FISH). Log-fold increases in the abundance of 16S rRNA genes from LDPE-associated bacteria occurred within 7 days with 16S rRNA gene numbers on LDPE surfaces differing significantly across sediment types, as shown by quantitative PCR. Terminal-restriction fragment length polymorphism (T-RFLP) analysis demonstrated rapid selection of LDPE-associated bacterial assemblages whose structure and composition differed significantly from those in surrounding sediments. Additionally, T-RFLP analysis revealed successional convergence of the LDPE-associated communities from the different sediments over the 14-day experiment. Sequencing of cloned 16S rRNA genes demonstrated that these communities were dominated after 14 days by the genera Arcobacter and Colwellia (totalling 84-93% of sequences). Attachment by Colwellia spp. onto LDPE within sediments was confirmed by CARD-FISH. These results demonstrate that bacteria within coastal marine sediments can rapidly colonize LDPE microplastics, with evidence for the successional formation of plastisphere-specific bacterial assemblages. Although the taxonomic compositions of these assemblages are likely to differ between marine sediments and the water column, both Arcobacter and Colwellia spp. have previously been affiliated with the degradation of hydrocarbon contaminants within low-temperature marine environments. Since hydrocarbon-degrading bacteria have also been discovered on plastic fragments in seawater, our data suggest that recruitment of hydrocarbonoclastic bacteria on microplastics is likely to represent a shared feature between both benthic and pelagic marine habitats.

PROTOZOA IN SUBSURFACE SEDIMENTS FROM SITE CONTAMI- NATED WITH AVIATION GASOLINE OR JET FUEL

EPA Science Inventory

Numbers of protozoa in the subsurface of aviation gasoline and jet fuel spill areas at a Coast Guard base at Traverse City, Mich., were determined. Boreholes were drilled in an uncontaminated location, in contaminated but untreated parts of the fuel plumes, and in the aviation ga...

Influence Of pH On The Transport Of Nanoscale Zinc Oxide In Saturated Porous Media

EPA Science Inventory

Widespread use of nanoscale zinc oxide (nZnO) in various fields causes subsurface environment contamination. Even though the transport of dissolved zinc ions in subsurface environments such as soils and sediments has been widely studied, the transport mechanism of nZnO in such e...

A mycological baseline study based on a multidisciplinary approach in a coastal area affected by contaminated torrent input.

PubMed

Capello, M; Carbone, C; Cecchi, G; Consani, S; Cutroneo, L; Di Piazza, S; Greco, G; Tolotti, R; Vagge, G; Zotti, M

2017-06-15

Fungi include a vast group of eukaryotic organisms able to colonise different natural, anthropised and extreme environments, including marine areas contaminated by metals. The present study aims to give a first multidisciplinary characterisation of marine bottom sediments contaminated by metals (Cd, Co, Cr, Cu, Ni, and Zn), originating in the water leakage from an abandoned Fe-Cu sulphide mine (Libiola, north-western Italy), and evaluate how the chemical and physical parameters of water and sediments may affect the benthic fungal communities. Our preliminary results showed the high mycodiversity of the marine sediments studied (13 genera and 23 species of marine fungi isolated), and the great physiological adaptability that this mycobiota evolved in reaction to the effects of the ecotoxic bottom sediment contamination, and associated changes in the seawater parameters. Copyright © 2017 Elsevier Ltd. All rights reserved.

A statistical approach to the interpretation of aliphatic hydrocarbon distributions in marine sediments

USGS Publications Warehouse

Rapp, J.B.

1991-01-01

Q-mode factor analysis was used to quantitate the distribution of the major aliphatic hydrocarbon (n-alkanes, pristane, phytane) systems in sediments from a variety of marine environments. The compositions of the pure end members of the systems were obtained from factor scores and the distribution of the systems within each sample was obtained from factor loadings. All the data, from the diverse environments sampled (estuarine (San Francisco Bay), fresh-water (San Francisco Peninsula), polar-marine (Antarctica) and geothermal-marine (Gorda Ridge) sediments), were reduced to three major systems: a terrestrial system (mostly high molecular weight aliphatics with odd-numbered-carbon predominance), a mature system (mostly low molecular weight aliphatics without predominance) and a system containing mostly high molecular weight aliphatics with even-numbered-carbon predominance. With this statistical approach, it is possible to assign the percentage contribution from various sources to the observed distribution of aliphatic hydrocarbons in each sediment sample. ?? 1991.

Time Matters: Increasing the Efficiency of Antarctic Marine Geology and Paleoceanography Expeditions by Providing Improved Sediment Chronology

NASA Astrophysics Data System (ADS)

Rosenheim, B. E.; Domack, E. W.; Shevenell, A.; Subt, C.

2015-12-01

To maximize the areal extent of Antarctic sedimentary records of past deglaciation, it is necessary to ensure more sediment cores can be adequately dated. Antarctic margin sediment is challenging to date due to the lack of preserved calcium carbonate, but the records contained in these sediments readily recount the history of deglaciation. Recent and continued development of new chronological methods for Antarctic margin sediments have allowed better use of the efforts of marine geological coring expeditions to the region. The development of Ramped PyrOx radiocarbon dating has allowed us to 1. improve dates in deglacial sediments where no carbonate is preserved, 2. date glacial sediments lying below the tills marking the last glaciation, and 3. compile core chronologies into a regional framework of ice shelf collapse that has eluded many marine geology campaigns over the last few decades. These advances in a fundamental aspect of geological sciences will put the U.S. and international community on a better foothold to interpret the past as it relates to our warming future. We will present these advances in chronology as well as the science that is enabled by them, while arguing that the future of Antarctic marine science also depends on investments in shore-based technologies that come at a relatively low cost.

Magnetic fingerprint in marine sediments: clues from cultivated Magnetovibrio blakemorei and recent cores from Brazilian Coast

NASA Astrophysics Data System (ADS)

Jovane, L.; Florindo, F.; Bazylinski, D. A.; Pellizari, V. H.; Brandini, F. P.; de Almeida, L. A.; Carneiro, F. R.; Braga, E. D.; Lins, U.

2013-12-01

The magnetic properties (first order reversal curves, ferromagnetic resonance and decomposition of saturation remanent magnetization acquisition) of Magnetovibrio blakemorei strain MV-1, a marine magnetotactic bacterium, differ from those of other magnetotactic species from sediments deposited in lakes and marine habitats previously studied. This finding suggests that magnetite produced by some magnetotactic bacteria retains magnetic properties in relation to the crystallographic structure of the magnetic phase produced and thus might represent a 'magnetic fingerprint' for a specific magnetotactic bacterium. The technique used to determine this fingerprint is a non-destructive, new technology that might allow for the identification and presence of specific species or types of magnetotactic bacteria in certain environments such as sediment. We also show some preliminary results on the biogeochemical factors that control magnetotactic bacterial populations, documenting the environment and the preservation of bacterial magnetite, which dominates the palaeomagnetic signal throughout recent sediments from Brazilian Coast. We searched for magnetotactic bacteria in order to understand the ecosystems and environmental change related to their presence in sediments. We focused on studying the environmental conditions that allow for the presence of magnetotactic bacteria and magnetosomes in sediments including determining magnetotactic bacterial populations in marine settings, measuring crucial nutrient availability in the water column and in sediments, and examining particulate delivery to the seafloor.

Secular and environmental constraints on the occurrence of dinosterane in sediments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Summons, R.E.; Boreham, C.J.; Thomas, J.

1992-06-01

The distribution patterns of sedimentary A-ring methylated steranes have changed markedly over geological time. Although dinosterane and its isomer 24-ethyl-4{alpha}-methylcholestane have been tentatively identified in three Proterozoic rock units, they are either not detectable or occur in low abundance relative to 3-methyl steranes throughout most of the Palaeozoic. Between Permian and middle Triassic times (260-220 Ma ago), 4-methyl sterane abundances in marine sediments increased markedly. The presence of dinosterane in some middle Triassic marine sediments is contemporaneous with the appearance of fossil cysts of uncontested dinoflagellate affinity. 4-Methyl steranes, including dinosterane or their precursor sterenes and sterols, then show amore » continuous presence, often in high abundance, in marine sediments from the late Triassic through to the present day. Assemblages of 4-methyl steranes and their precursors, but with dinosterane absent or in low relative abundance, are often the predominant steroids in lacustrine sediments in the Cainozoic. Dinosterane appears to arise predominantly from marine dinoflagellates and, as a consequence, is a useful biological marker for Mesozoic and Cainozoic marine organic matter. The isomer 24-ethyl-4{alpha}-methylcholestane is likely to have multiple origins although its very high abundance in Tertiary lacustrine sediments and oils, compared to older materials, suggests that dinoflagellates could also be the source in these cases.« less

Use of a Novel Sediment Exposure to Determine the Effects of ...

EPA Pesticide Factsheets

Triclosan (5-chloro-2-(2,4-dichlorophenoxy) phenol) is a relatively new, commonly used antimicrobial compound found in many personal care products. Triclosan is toxic to marine organisms at the ug/l level, can photo-degrade to a dioxin, accumulate in humans, and has been found to be stable in marine sediments for over 30 years. To determine the effects of triclosan on marine benthic communities, we brought intact sediment cores into the laboratory and held them under flowing seawater conditions. A two cm layer of triclosan-spiked sediment was applied to the surface, and after a two-week exposure the meio- and macrofaunal communities were assessed for differences in composition relative to non-spiked core. The High Triclosan treatment (180 mg/kg dry weight) affected both the meio- and macro benthic communities. There were no discernable differences in the Low Triclosan treatment (14 mg/kg dry weight dry). This exposure method is effective for testing benthic community response to sediment contaminants, but improvements should be made as to the amount and method of applying the overlying sediment to prevent smothering of fragile benthic organisms. This paper describes the effects of triclosan on meio- and macro-benthic marine communities. It describes a novel system of whole benthic community exposure that is a promising method to evaluate effects on intact marine benthic communities. Triclosan concentrations greater than 180 mg/kg dry weight had a signif

High growth potential and nitrogen removal performance of marine anammox bacteria in shrimp-aquaculture sediment.

PubMed

Van Duc, Luong; Song, Bongkeun; Ito, Hiroaki; Hama, Takehide; Otani, Masashi; Kawagoshi, Yasunori

2018-04-01

Anaerobic ammonium oxidation (anammox) bacteria were enriched in continuous packed-bed columns with marine sediment. One column (SB-C) was packed with only marine sediment collected from a shrimp-aquaculture pond, and another column (SB-AMX) was inoculated with marine anammox bacteria (MAB) as a control. These columns were continuously fed with natural or artificial seawater including ammonium (NH 4 + ) and nitrite (NO 2 - ). The SB-AMX showed anammox activities from the beginning and continued for over 200 days. However, the SB-C had no nitrogen removal performance for over 170 days. After adding a bicarbonate solution (KHCO 3 ) to the sediment-only packed column, anammox activity was observed within 13 days. The column exhibited a nitrogen removal efficiency (NRE) of 88% at a nitrogen loading rate (NLR) of 1.0 kg-N·m -3 ·day -1 , which was comparable to the control one. A next-generation sequencing analysis revealed the predominance of MAB related to "Candidatus Scalindua spp.". In addition, the co-occurrence of sulfur-oxidizing denitrifiers was observed, which suggests their symbiotic relationship. This study suggests the applicability of MAB for in-situ bioremediation of nitrogen-contaminated marine sediments and reveals a potential microbial interaction between anammox and sulfur-oxidizing communities responsible for nitrogen and sulfur cycling in marine aquaculture systems. Copyright © 2017 Elsevier Ltd. All rights reserved.

Salmon Aquaculture and Antimicrobial Resistance in the Marine Environment

PubMed Central

Buschmann, Alejandro H.; Tomova, Alexandra; López, Alejandra; Maldonado, Miguel A.; Henríquez, Luis A.; Ivanova, Larisa; Moy, Fred; Godfrey, Henry P.; Cabello, Felipe C.

2012-01-01

Antimicrobials used in salmon aquaculture pass into the marine environment. This could have negative impacts on marine environmental biodiversity, and on terrestrial animal and human health as a result of selection for bacteria containing antimicrobial resistance genes. We therefore measured the numbers of culturable bacteria and antimicrobial-resistant bacteria in marine sediments in the Calbuco Archipelago, Chile, over 12-month period at a salmon aquaculture site approximately 20 m from a salmon farm and at a control site 8 km distant without observable aquaculture activities. Three antimicrobials extensively used in Chilean salmon aquaculture (oxytetracycline, oxolinic acid, and florfenicol) were studied. Although none of these antimicrobials was detected in sediments from either site, traces of flumequine, a fluoroquinolone antimicrobial also widely used in Chile, were present in sediments from both sites during this period. There were significant increases in bacterial numbers and antimicrobial-resistant fractions to oxytetracycline, oxolinic acid, and florfenicol in sediments from the aquaculture site compared to those from the control site. Interestingly, there were similar numbers of presumably plasmid-mediated resistance genes for oxytetracycline, oxolinic acid and florfenicol in unselected marine bacteria isolated from both aquaculture and control sites. These preliminary findings in one location may suggest that the current use of large amounts of antimicrobials in Chilean aquaculture has the potential to select for antimicrobial-resistant bacteria in marine sediments. PMID:22905164

Nitrous Oxide Production and Fluxes from Coastal Sediments under Varying Environmental Conditions

NASA Astrophysics Data System (ADS)

Ziebis, W.; Wankel, S. D.; de Beer, D.; Dentinger, J.; Buchwald, C.; Charoenpong, C.

2014-12-01

Although coastal zones represent important contributors to the increasing levels of atmospheric nitrous oxide (N2O), it is still unclear which role benthic processes play and whether marine sediments represent sinks or sources for N2O, since interactions among closely associated microbial groups lead to a high degree of variability. In addition, coastal areas are extremely dynamic regions, often exposed to increased nutrient loading and conditions of depleted oxygen. We investigated benthic N2O fluxes and how environmental conditions affect N2O production in different sediments at 2 different geographical locations (German Wadden Sea, a California coastal lagoon). At each location, a total of 32 sediment cores were taken in areas that differed in sediment type, organic content and pore-water nutrient concentrations, as well as in bioturbation activity. Parallel cores were incubated under in-situ conditions, low oxygen and increased nitrate levels for 10 days. Zones of N2O production and consumption were identified in intact cores by N2O microprofiles at the beginning and end of the experiments. In a collaborative effort to determine the dominant sources of N2O, samples were taken throughout the course of the experiments for the determination of the isotopic composition of N2O (as well as nitrate, nitrite and ammonium). Our results indicate that both, nitrate addition and low oxygen conditions in the overlying water, caused an increase of subsurface N2O production in most sediments, with a high variability between different sediment types. N2O production in the sediments was accompanied by N2O consumption, reducing the fluxes to the water column. In general, organic rich sediments showed the strongest response to environmental changes with increased production and efflux of N2O into the overlying water. Bioturbation activity added to the complexity of N2O dynamics by an increase in nitrification-denitrification processes, as well as enhanced pore-water transport. The results will be used in a metabolic modeling approach that will allow numerical simulation and prediction of sedimentary N2O dynamics.

A cryptic sulfur cycle driven by iron in the methane zone of marine sediment (Aarhus Bay, Denmark)

NASA Astrophysics Data System (ADS)

Holmkvist, Lars; Ferdelman, Timothy G.; Jørgensen, Bo Barker

2011-06-01

Sulfate reduction and sulfur-iron geochemistry were studied in 5-6 m deep gravity cores of Holocene mud from Aarhus Bay (Denmark). A goal was to understand whether sulfate is generated by re-oxidation of sulfide throughout the sulfate and methane zones, which might explain the abundance of active sulfate reducers deep below the main sulfate zone. Sulfate penetrated down to 130 cm where methane started to build up and where the concentration of free sulfide peaked at 5.5 mM. Below this sulfate-methane transition, sulfide diffused downwards to a sulfidization front at 520 cm depth, below which dissolved iron, Fe 2+, accumulated in the pore water. Sulfate reduction rates measured by 35S-tracer incubations in the sulfate zone were high due to high concentrations of reactive organic matter. Within the sulfate-methane transition, sulfate reduction was distinctly stimulated by the anaerobic oxidation of methane. In the methane zone below, sulfate remained at positive "background" concentrations of <0.5 mM down to the sulfidization front. Sulfate reduction decreased steeply to rates which at 300-500 cm depth were 0.2-1 pmol SO 42- cm -3 d -1, i.e., 4-5 orders of magnitude lower than rates measured near the sediment surface. The turn-over time of sulfate increased from 3 years at 12 cm depth to 100-1000 years down in the methane zone. Sulfate reduction in the methane zone accounted for only 0.1% of sulfate reduction in the entire sediment column and was apparently limited by the low pore water concentration of sulfate and the low availability of organic substrates. Amendment of the sediment with both sulfate and organic substrates immediately caused a 10- to 40-fold higher, "potential sulfate reduction" which showed that a physiologically intact community of sulfate reducing bacteria was present. The "background" sulfate concentration appears to be generated from the reaction of downwards diffusing sulfide with deeply buried Fe(III) species, such as poorly-reactive iron oxides or iron bound in reactive silicates. The oxidation of sulfide to sulfate in the sulfidic sediment may involve the formation of elemental sulfur and thiosulfate and their further disproportionation to sulfide and sulfate. The net reaction of sulfide and Fe(III) to form pyrite requires an additional oxidant, irrespective of the formation of sulfate. This could be CO 2 which is reduced with H 2 to methane. The methane subsequently diffuses upwards to become re-oxidized at the sulfate-methane transition and thereby removes excess reducing power and enables the formation of excess sulfate. We show here how the combination of these well-established sulfur-iron-carbon reactions may lead to the deep formation of sulfate and drive a cryptic sulfur cycle. The iron-rich post-glacial sediments underlying Holocene marine mud stimulate the strong sub-surface sulfide reoxidation observed in Aarhus Bay and are a result of the glacial to interglacial history of the Baltic Sea area. Yet, processes similar to the ones described here probably occur widespread in marine sediments, in particular along the ocean margins.

Characterization of a Louisiana Bay Bottom

NASA Astrophysics Data System (ADS)

Freeman, A. M.; Roberts, H. H.

2016-02-01

This study correlates side-scan sonar and CHIRP water bottom-subbottom acoustic amplitudes with cone penetrometer data to expand the limited understanding of the geotechnical properties of sediments in coastal Louisiana's bays. Standardized analysis procedures were developed to characterize the bay bottom and shallow subsurface of the Sister Lake bay bottom. The CHIRP subbottom acoustic data provide relative amplitude information regarding reflection horizons of the bay bottom and shallow subsurface. An amplitude analysis technique was designed to identify different reflectance regions within the lake from the CHIRP subbottom profile data. This amplitude reflectivity analysis technique provides insight into the relative hardness of the bay bottom and shallow subsurface, useful in identifying areas of erosion versus deposition from storms, as well as areas suitable for cultch plants for state oyster seed grounds, or perhaps other restoration projects. Side-scan and CHIRP amplitude reflectivity results are compared to penetrometer data that quantifies geotechnical properties of surface and near-surface sediments. Initial results indicate distinct penetrometer signatures that characterize different substrate areas including soft bottom, storm-deposited silt-rich sediments, oyster cultch, and natural oyster reef areas. Although amplitude analysis of high resolution acoustic data does not directly quantify the geotechnical properties of bottom sediments, our analysis indicates a close relationship. The analysis procedures developed in this study can be applied in other dynamic coastal environments, "calibrating" the use of synoptic acoustic methods for large-scale water bottom characterization.

Contribution of wave-induced liquefaction in triggering hyperpycnal flows in Yellow River Estuary

NASA Astrophysics Data System (ADS)

Liu, X.; Jia, Y.

2017-12-01

Hyperpycnal flows, driven mainly by the gravity of near-bed negatively buoyant layers, are one of the most important processes for moving marine sediment across the earth. The issue of hyperpycnal flows existing in marine environment has drawn increasing scholars' attention since that was observed in situ off the Yellow River estuary in the 1980s. Most researches maintain that hyperpycnal flows in the Yellow River estuary are caused by the high-concentration sediments discharged from the Yellow River into sea, however, other mechanisms have been discounted since the sediment input from the river has been significantly changed due to climate and anthropogenic change. Here we demonstrate that wave-seabed interactions can generate hyperpycnal flows, without river input, by sediment flux convergence above an originally consolidated seabed. Using physical model experiments and multi-sensor field measurements, we characterize the composition-dependent liquefaction properties of the sediment due to wave-induced pore water pressure accumulation. This allows quantification of attenuation of sediment threshold velocity and critical shear stress (predominant variables in transport mechanics) during the liquefaction under waves. Parameterising the wave-seabed interactions in a new concept model shows that high waves propagating over the seabed sediment can act as a scarifier plough remoulding the seabed sediment. This contributes to marine hyperpycnal flows as the sediment is quickly resuspended under accumulating attenuation in strength. Therefore, the development of more integrative numerical models could supply realistic predictions of marine record in response to rising magnitude and frequency of storms.

Open inlet conversion: Water quality benefits of two designs

USDA-ARS?s Scientific Manuscript database

Open surface inlets that connect to subsurface tile drainage systems provide a direct pathway for movement of sediment, nutrients, and agrochemicals to surface waters. This study was conducted to determine the reduction in drainage effluent total suspended sediment (TSS) and phosphorus (P) concentr...

Recruitment from an egg bank into the plankton in Baisha Bay, a mariculture base in Southern China

NASA Astrophysics Data System (ADS)

Wang, Qing; Luan, Lei-Lei; Chen, Liang-Dong; Yuan, Dan-Ni; Liu, Sheng; Hwang, Jiang-Shiou; Yang, Yu-Feng

2016-11-01

The potential recruitment of resting eggs of calanoid copepods and rotifers to planktonic populations was investigated in the surface and sub-surface sediments of three mariculture zones: an integrated seaweed Gracilaria lemaneiformis and shellfish cultivation area (G), a fish cultivation area (F), and a shellfish cultivation area (S), as well as the sediments of a nearby control sea area (C) in a mariculture base in Southern China. The potential recruitment of copepod and rotifer eggs in the sediments of C and G was significantly higher than in F and S. Potential recruitment in the sub-surface sediments of F and S was not observed, suggesting that fish and shellfish mariculture may be responsible for this decrease. The hatching success of resting eggs of copepods and rotifers was affected by mariculture type, and that large-scale seaweed cultivation may offset the adverse effect of fish and shellfish cultivation on the resting eggs if integrated cultivation is adopted.

Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment

DOE PAGES

Castelle, Cindy J.; Hug, Laura A.; Wrighton, Kelly C.; ...

2013-08-27

Microorganisms in the subsurface represent a substantial but poorly understood component of the Earth’s biosphere. Subsurface environments are complex and difficult to characterize; thus, their microbiota have remained as a ‘dark matter’ of the carbon and other biogeochemical cycles. Here we deeply sequence two sediment-hosted microbial communities from an aquifer adjacent to the Colorado River, CO, USA. No single organism represents more than ~1% of either community. Remarkably, many bacteria and archaea in these communities are novel at the phylum level or belong to phyla lacking a sequenced representative. The dominant organism in deeper sediment, RBG-1, is a member ofmore » a new phylum. On the basis of its reconstructed complete genome, RBG-1 is metabolically versatile. Its wide respiration-based repertoire may enable it to respond to the fluctuating redox environment close to the water table. We document extraordinary microbial novelty and the importance of previously unknown lineages in sediment biogeochemical transformations.« less

Immobilization and Natural Attenuation of Arsenic in Surface and Subsurface Sediments

NASA Astrophysics Data System (ADS)

O'Day, P. A.; Illera, V.; Choi, S.; Vlassopoulos, D.

2008-12-01

Understanding of molecular-scale biogeochemical processes that control the mobilization and distribution of As and other oxyanions can be used to develop remediation strategies that take advantage of natural geochemical and hydrologic gradients. Arsenic and other toxic oxyanions can be mobilized at low bulk sediment concentrations (ppm range) and thus, treatment technologies are challenged by low contaminant concentrations, widespread sources, variable pH and Eh conditions, and inaccessibility of subsurface environments. In situ chemical amendments to soils and sediments can be used to decrease the mobility and bioaccessibility of As and oxyanions through sorption to, or precipitation with, stabilizing phases. At a site near San Francisco Bay (CA, USA), treatment of As-contaminated soils with sulfate-cement amendments has effectively immobilized As. Laboratory experiments with field soils and spectroscopic characterizations showed that in high pH cement-type treatments, As is precipitated in ettringite-type phases (Ca-Al sulfates), whereas in low pH ferrous sulfate treatments, As is associated with an iron-arsenate phase (angellelite). The presence of As-associated ettringite-type phases in field sediments amended more than a decade ago indicates long-term stability of these neophases, as long as environmental conditions are relatively constant. At sites of subsurface contamination, monitored natural attenuation (MNA) as a remediation approach for As is gaining interest and acceptance. Successful implementation of MNA requires a mechanistic understanding of As sequestration processes and of the subsurface conditions that may enhance or reduce long-term effectiveness. At a former military site (MA, USA), naturally occurring As was mobilized from sediments as a result of reducing conditions from addition of organic carbon as a biodegradation treatment of chlorinated solvents. Elevated As concentrations were not detected further than about 30 m downgradient of the injection, indicating that As sequestration was also occurring by natural processes in the aquifer. Laboratory experiments with aquifer sediments and spectroscopic characterization of reaction products were used to quantify the extent of As(III) sorption and abiotic oxidation to As(V), probably by Mn(III,IV) present in sediment minerals. Interrogation by XANES spectroscopy and analysis of uptake data indicated that sediments have a limited abiotic oxidation capacity for As(III), which did not exceed 30% of the total amount of As sorbed and was estimated at 0.025 to 0.4 mmol/kg sediment. Results indicate that pH-controlled sorption is the primary mechanism for As uptake and sediment capacity for oxidative sorption is limited. As such, MNA may be temporarily effective at this site, depending on the size of the contaminant plume and the rate of groundwater flow.

Immobilization of U(VI) from oxic groundwater by Hanford 300 Area sediments and effects of Columbia River water.

PubMed

Ahmed, Bulbul; Cao, Bin; Mishra, Bhoopesh; Boyanov, Maxim I; Kemner, Kenneth M; Fredrickson, Jim K; Beyenal, Haluk

2012-09-01

Regions within the U.S. Department of Energy Hanford 300 Area (300 A) site experience periodic hydrologic influences from the nearby Columbia River as a result of changing river stage, which causes changes in groundwater elevation, flow direction and water chemistry. An important question is the extent to which the mixing of Columbia River water and groundwater impacts the speciation and mobility of uranium (U). In this study, we designed experiments to mimic interactions among U, oxic groundwater or Columbia River water, and 300 A sediments in the subsurface environment of Hanford 300 A. The goals were to investigate mechanisms of: 1) U immobilization in 300 A sediments under bulk oxic conditions and 2) U remobilization from U-immobilized 300 A sediments exposed to oxic Columbia River water. Initially, 300 A sediments in column reactors were fed with U(VI)-containing oxic 1) synthetic groundwater (SGW), 2) organic-amended SGW (OA-SGW), and 3) de-ionized (DI) water to investigate U immobilization processes. After that, the sediments were exposed to oxic Columbia River water for U remobilization studies. The results reveal that U was immobilized by 300 A sediments predominantly through reduction (80-85%) when the column reactor was fed with oxic OA-SGW. However, U was immobilized by 300 A sediments through adsorption (100%) when the column reactors were fed with oxic SGW or DI water. The reduced U in the 300 A sediments fed with OA-SGW was relatively resistant to remobilization by oxic Columbia River water. Oxic Columbia River water resulted in U remobilization (∼7%) through desorption, and most of the U that remained in the 300 A sediments fed with OA-SGW (∼93%) was in the form of uraninite nanoparticles. These results reveal that: 1) the reductive immobilization of U through OA-SGW stimulation of indigenous 300 A sediment microorganisms may be viable in the relatively oxic Hanford 300 A subsurface environments and 2) with the intrusion of Columbia River water, desorption may be the primary process resulting in U remobilization from OA-SGW-stimulated 300 A sediments at the subsurface of the Hanford 300 A site. Copyright © 2012 Elsevier Ltd. All rights reserved.

Increased sediment loads cause non-linear decreases in seagrass suitable habitat extent

PubMed Central

Atkinson, Scott; Klein, Carissa Joy; Weber, Tony; Possingham, Hugh P.

2017-01-01

Land-based activities, including deforestation, agriculture, and urbanisation, cause increased erosion, reduced inland and coastal water quality, and subsequent loss or degradation of downstream coastal marine ecosystems. Quantitative approaches to link sediment loads from catchments to metrics of downstream marine ecosystem state are required to calculate the cost effectiveness of taking conservation actions on land to benefits accrued in the ocean. Here we quantify the relationship between sediment loads derived from landscapes to habitat suitability of seagrass meadows in Moreton Bay, Queensland, Australia. We use the following approach: (1) a catchment hydrological model generates sediment loads; (2) a statistical model links sediment loads to water clarity at monthly time-steps; (3) a species distribution model (SDM) factors in water clarity, bathymetry, wave height, and substrate suitability to predict seagrass habitat suitability at monthly time-steps; and (4) a statistical model quantifies the effect of sediment loads on area of seagrass suitable habitat in a given year. The relationship between sediment loads and seagrass suitable habitat is non-linear: large increases in sediment have a disproportionately large negative impact on availability of seagrass suitable habitat. Varying the temporal scale of analysis (monthly vs. yearly), or varying the threshold value used to delineate predicted seagrass presence vs. absence, both affect the magnitude, but not the overall shape, of the relationship between sediment loads and seagrass suitable habitat area. Quantifying the link between sediment produced from catchments and extent of downstream marine ecosystems allows assessment of the relative costs and benefits of taking conservation actions on land or in the ocean, respectively, to marine ecosystems. PMID:29125843

Early evolution of the southern margin of the Neuquén Basin, Argentina: Tectono-stratigraphic implications for rift evolution and exploration of hydrocarbon plays

NASA Astrophysics Data System (ADS)

D'Elia, Leandro; Bilmes, Andrés; Franzese, Juan R.; Veiga, Gonzalo D.; Hernández, Mariano; Muravchik, Martín

2015-12-01

Long-lived rift basins are characterized by a complex structural and tectonic evolution. They present significant lateral and vertical stratigraphic variations that determine diverse basin-patterns at different timing, scale and location. These issues cause difficulties to establish facies models, correlations and stratal stacking patterns of the fault-related stratigraphy, specially when exploration of hydrocarbon plays proceeds on the subsurface of a basin. The present case study corresponds to the rift-successions of the Neuquén Basin. This basin formed in response to continental extension that took place at the western margin of Gondwana during the Late Triassic-Early Jurassic. A tectono-stratigraphic analysis of the initial successions of the southern part of the Neuquén Basin was carried out. Three syn-rift sequences were determined. These syn-rift sequences were located in different extensional depocentres during the rifting phases. The specific periods of rifting show distinctly different structural and stratigraphic styles: from non-volcanic to volcanic successions and/or from continental to marine sedimentation. The results were compared with surface and subsurface interpretations performed for other depocentres of the basin, devising an integrated rifting scheme for the whole basin. The more accepted tectono-stratigraphic scheme that assumes the deposits of the first marine transgression (Cuyo Cycle) as indicative of the onset of a post-rift phase is reconsidered. In the southern part of the basin, the marine deposits (lower Cuyo Cycle) were integrated into the syn-rift phase, implying the existence of different tectonic signatures for Cuyo Cycle along the basin. The rift climax becomes younger from north to south along the basin. The post-rift initiation followed the diachronic ending of the main syn-rift phase throughout the Neuquén Basin. Thus, initiation of the post-rift stage started in the north and proceeded towards the south, constituting a diachronous post-rift event. This arrangement implies that the lower part of Cuyo Cycle, traditionally related to regional thermal subsidence, may be deposited during either mechanical subsidence or thermal subsidence according to its position within the basin.

Hydrology of the solid waste burial ground as related to potential migration of radionuclides, Idaho National Engineering Laboratory

USGS Publications Warehouse

Barraclough, Jack T.; Robertson, J.B.; Janzer, V.J.; Saindon, L.G.

1976-01-01

A study was made (1970-1974) to evaluate the geohydrologic and geochemical controls on subsurface migration of radionuclides from pits and trenches in the Idaho National Engineering Laboratory (INEL) solid waste burial ground and to determine the existence and extent of radionuclide migration from the burial ground. A total of about 1,700 sediment, rock, and water samples were collected from 10 observation wells drilled in and near the burial ground of Idaho National Engineering Laboratory, formerly the National Reactor Testing Station (NRTS). Within the burial ground area, the subsurface rocks are composed principally of basalt. Wind- and water-deposited sediments occur at the surface and in beds between the thicker basalt zones. Two principal sediment beds occur at about 110 feet and 240 feet below the land surface. The average thickness of the surficial sedimentary layer is about 15 feet while that of the two principal subsurface layers is 13 and 14 feet, respectively. The water table in the aquifer beneath the burial ground is at a depth of about 580 feet. Fission, activation, and transuranic elements were detected in some of the samples from the 110- and 240-foot sedimentary layers. (Woodard-USGS)

Evidence of Late Pliocene-Early Pleistocene marine environments in the deep subsurface of the Lihue Basin, Kauai, Hawaii

USGS Publications Warehouse

Izuka, S.K.; Resig, J.M.

2008-01-01

Cuttings recovered from two deep exploratory wells in the Lihue Basin, Kauai, Hawaii, include fossiliferous marine deposits that offer an uncommon opportunity to study paleoenvironments from the deep subsurface in Hawaii and interpret the paleogeography and geologic history of Kauai. These deposits indicate that two marine incursions gave rise to protected shallow-water, low-energy embayments in the southern part of the Lihue Basin in the late Pliocene-early Pleistocene. During the first marine incursion, the embayment was initially zoned, with a variable-salinity environment nearshore and a normal-marine reef environment offshore. The offshore reef environment eventually evolved to a nearshore, variable-salinity environment as the outer part of the embayment shallowed. During the second marine incursion, the embayment had normal-marine to hypersaline conditions, which constitute a significant departure from the variable-salinity environment present during the first marine incursion. Large streams draining the southern Lihue Basin are a likely source of the freshwater that caused the salinity fluctuations evident in the fossils from the first marine incursion. Subsequent volcanic eruptions produced lava flows that buried the embayment and probably diverted much of the stream flow in the southern Lihue Basin northward, to its present point of discharge north of Kalepa Ridge. As a result, the embayment that formed during the second marine incursion received less freshwater, and a normal-marine to hypersaline environment developed. The shallow-water marine deposits, currently buried between 86 m and 185 m below present sea level, have implications for regional tectonics and global eustasy. Copyright ?? 2008, SEPM (Society for Sedimentary Geology).

Textural characteristics and sedimentary environment of sediment at eroded and deposited regions in the severely eroded coastline of Batu Pahat, Malaysia.

PubMed

Wan Mohtar, Wan Hanna Melini; Nawang, Siti Aminah Bassa; Abdul Maulud, Khairul Nizam; Benson, Yannie Anak; Azhary, Wan Ahmad Hafiz Wan Mohamed

2017-11-15

This study investigates the textural characteristics of sediments collected at eroded and deposited areas of highly severed eroded coastline of Batu Pahat, Malaysia. Samples were taken from systematically selected 23 locations along the 67km stretch of coastline and are extended to the fluvial sediments of the main river of Batu Pahat. Grain size distribution analysis was conducted to identify its textural characteristics and associated sedimentary transport behaviours. Sediments obtained along the coastline were fine-grained material with averaged mean size of 7.25 ϕ, poorly sorted, positively skewed and has wide distributions. Samples from eroded and deposition regions displayed no distinctive characteristics and exhibited similar profiles. The high energy condition transported the sediments as suspension, mostly as pelagic and the sediments were deposited as shallow marine and agitated deposits. The fluvial sediments of up to 3km into the river have particularly similar profile of textural characteristics with the neighbouring marine sediments from the river mouth. Profiles were similar with marine sediments about 3km opposite the main current and can go up to 10km along the current of Malacca Straits. Copyright © 2017 Elsevier B.V. All rights reserved.

Heavy metals in marine coastal sediments: assessing sources, fluxes, history and trends.

PubMed

Frignani, Mauro; Bellucci, Luca Giorgio

2004-01-01

Examples are presented from the Adriatic Sea, the Ligurian Sea and the Venice Lagoon to illustrate different approaches to the study of anthropogenic metals in marine coastal sediments. These examples refer to studies of areal distribution and transport mechanisms, individuation of the sources, sediment dating, chronology of the fluxes, present and past trends. In particular, some of the findings achieved in studying the Venice Lagoon are discussed from the point of view of anthropogenic changes both in sediment composition and contaminant fluxes.

Trace Elements in Marine Sediment and Organisms in the Gulf of Thailand

PubMed Central

Worakhunpiset, Suwalee

2018-01-01

This review summarizes the findings from studies of trace element levels in marine sediment and organisms in the Gulf of Thailand. Spatial and temporal variations in trace element concentrations were observed. Although trace element contamination levels were low, the increased urbanization and agricultural and industrial activities may adversely affect ecosystems and human health. The periodic monitoring of marine environments is recommended in order to minimize human health risks from the consumption of contaminated marine organisms. PMID:29677146

Levels of Cd, Cu, Pb and V in marine sediments in the vicinity of the Single Buoy Moorings (SBM3) at Mina Al Fahal in the Sultanate of Oman.

PubMed

Al-Husaini, Issa; Abdul-Wahab, Sabah; Ahamad, Rahmalan; Chan, Keziah

2014-06-15

Recently in the Sultanate of Oman, there has been a rapid surge of coastal developments. These developments cause metal contamination, which may affect the habitats and communities at and near the coastal region. As a result, a study was conducted to assess the level of metal contamination and its impact on the marine sediments in the vicinity of the Single Buoy Moorings 3 (SBM3) at Mina Al Fahal in the Sultanate of Oman. Marine subtidal sediment samples were collected from six different stations of the SBM3 for the period ranging from June 2009 to April 2010. These samples were then analyzed for their level and distribution of the heavy metals of cadmium (Cd), copper (Cu), lead (Pb) and vanadium (V). Overall, low concentrations of all four heavy metals were measured from the marine sediments, indicating that the marine at SBM3 is of good quality. Copyright © 2014 Elsevier Ltd. All rights reserved.

Geochemical record of methane seepage in authigenic carbonates and surrounding host sediments: A case study from the South China Sea

NASA Astrophysics Data System (ADS)

Hu, Yu; Chen, Linying; Feng, Dong; Liang, Qianyong; Xia, Zhen; Chen, Duofu

2017-05-01

Sediments at marine methane seep sites provide potential archives of past fluid flow that serve to explore seepage activities over time. Three gravity cores (D-8, D-F, and D-7) were collected from seep sites on the northern slope of the South China Sea where gas hydrates were drilled in the subsurface. Various carbon and sulfur contents, δ13C values of total inorganic carbon (δ13CTIC), δ34S values of chromium reducible sulfur (δ34SCRS), trace element contents, grain size, and AMS 14C dating of planktonic Foraminifera in the sediments were determined to explore the availability of related proxies at seeps and to trace past methane seepage activities. Evidence for the presence of methane seepage and consequently anaerobic oxidation of methane comes from the occurrence of 13C-depleted authigenic carbonate nodules (δ13C values as low as -49‰) discovered at an interval of 150-200 cm in core D-7. This finding is supported by high S/C ratios and molybdenum enrichment in the same interval. However, low contents of CRS and negative δ34SCRS values are present. It is suggested to reflect a transient methane seepage event, which continued for about 1 ka based on the 14C ages. Cores D-8 and D-F have δ13CTIC values close to zero, low S/C ratios and CRS contents, negative δ34SCRS values, and no trace element enrichment, suggesting a negligible impact of methane-seepage on the sediments. The negative δ34SCRS values of the studied seep-impacted and background sediments suggest that the application of δ34SCRS alone as a proxy to identify AOM-related process may be insufficient. Sediment carbon-sulfur-trace element systematics and 14C ages used here have the potential to be a promising tool to recognize transient methane seepages and constrain their timescales.

GDGT and alkenone flux in the northern Gulf of Mexico: Implications for the TEX86 and UK'37 paleothermometers

NASA Astrophysics Data System (ADS)

Richey, Julie N.; Tierney, Jessica E.

2016-12-01

The TEX86 and U37K' molecular biomarker proxies have been broadly applied in downcore marine sediments to reconstruct past sea surface temperature (SST). Although both TEX86 and U37K' have been interpreted as proxies for mean annual SST throughout the global ocean, regional studies of glycerol dibiphytanyl glycerol tetraethers (GDGTs) and alkenones in sinking particles are required to understand the influence of seasonality, depth distribution, and diagenesis on downcore variability. We measure GDGT and alkenone flux, as well as the TEX86 and U37K' indices in a 4 year sediment trap time series (2010-2014) in the northern Gulf of Mexico (nGoM), and compare these data with core-top sediments at the same location. GDGT and alkenone fluxes do not show a consistent seasonal cycle; however, the largest flux peaks for both occurs in winter. U37K' covaries with SST over the 4 year sampling interval, but the U37K'-SST relationship in this data set implies a smaller slope or nonlinearity at high temperatures when compared with existing calibrations. Furthermore, the flux-weighted U37K' value from sinking particles is significantly lower than that of underlying core-top sediments, suggesting preferential diagenetic loss of the tri-unsaturated alkenone in sediments. TEX86 does not covary with SST, suggesting production in the subsurface upper water column. The flux-weighted mean TEX86 matches that of core-top sediments, confirming that TEX86 in the nGoM reflects local planktonic production rather than allochthonous or in situ sedimentary production. We explore potential sources of uncertainty in both proxies in the nGoM but demonstrate that they show nearly identical trends in twentieth century SST, despite these factors.

Predominance of Viable Spore-Forming Piezophilic Bacteria in High-Pressure Enrichment Cultures from ~1.5 to 2.4 km-Deep Coal-Bearing Sediments below the Ocean Floor

PubMed Central

Fang, Jiasong; Kato, Chiaki; Runko, Gabriella M.; Nogi, Yuichi; Hori, Tomoyuki; Li, Jiangtao; Morono, Yuki; Inagaki, Fumio

2017-01-01

Phylogenetically diverse microorganisms have been observed in marine subsurface sediments down to ~2.5 km below the seafloor (kmbsf). However, very little is known about the pressure-adapted and/or pressure-loving microorganisms, the so called piezophiles, in the deep subseafloor biosphere, despite that pressure directly affects microbial physiology, metabolism, and biogeochemical processes of carbon and other elements in situ. In this study, we studied taxonomic compositions of microbial communities in high-pressure incubated sediment, obtained during the Integrated Ocean Drilling Program (IODP) Expedition 337 off the Shimokita Peninsula, Japan. Analysis of 16S rRNA gene-tagged sequences showed that members of spore-forming bacteria within Firmicutes and Actinobacteria were predominantly detected in all enrichment cultures from ~1.5 to 2.4 km-deep sediment samples, followed by members of Proteobacteria, Acidobacteria, and Bacteroidetes according to the sequence frequency. To further study the physiology of the deep subseafloor sedimentary piezophilic bacteria, we isolated and characterized two bacterial strains, 19R1-5 and 29R7-12, from 1.9 and 2.4 km-deep sediment samples, respectively. The isolates were both low G+C content, gram-positive, endospore-forming and facultative anaerobic piezophilic bacteria, closely related to Virgibacillus pantothenticus and Bacillus subtilis within the phylum Firmicutes, respectively. The optimal pressure and temperature conditions for growth were 20 MPa and 42°C for strain 19R1-5, and 10 MPa and 43°C for strain 29R7-12. Bacterial (endo)spores were observed in both the enrichment and pure cultures examined, suggesting that these piezophilic members were derived from microbial communities buried in the ~20 million-year-old coal-bearing sediments after the long-term survival as spores and that the deep biosphere may host more abundant gram-positive spore-forming bacteria and their spores than hitherto recognized. PMID:28220112

Predominance of Viable Spore-Forming Piezophilic Bacteria in High-Pressure Enrichment Cultures from ~1.5 to 2.4 km-Deep Coal-Bearing Sediments below the Ocean Floor.

PubMed

Fang, Jiasong; Kato, Chiaki; Runko, Gabriella M; Nogi, Yuichi; Hori, Tomoyuki; Li, Jiangtao; Morono, Yuki; Inagaki, Fumio

2017-01-01

Phylogenetically diverse microorganisms have been observed in marine subsurface sediments down to ~2.5 km below the seafloor (kmbsf). However, very little is known about the pressure-adapted and/or pressure-loving microorganisms, the so called piezophiles, in the deep subseafloor biosphere, despite that pressure directly affects microbial physiology, metabolism, and biogeochemical processes of carbon and other elements in situ . In this study, we studied taxonomic compositions of microbial communities in high-pressure incubated sediment, obtained during the Integrated Ocean Drilling Program (IODP) Expedition 337 off the Shimokita Peninsula, Japan. Analysis of 16S rRNA gene-tagged sequences showed that members of spore-forming bacteria within Firmicutes and Actinobacteria were predominantly detected in all enrichment cultures from ~1.5 to 2.4 km-deep sediment samples, followed by members of Proteobacteria, Acidobacteria, and Bacteroidetes according to the sequence frequency. To further study the physiology of the deep subseafloor sedimentary piezophilic bacteria, we isolated and characterized two bacterial strains, 19R1-5 and 29R7-12, from 1.9 and 2.4 km-deep sediment samples, respectively. The isolates were both low G+C content, gram-positive, endospore-forming and facultative anaerobic piezophilic bacteria, closely related to Virgibacillus pantothenticus and Bacillus subtilis within the phylum Firmicutes, respectively. The optimal pressure and temperature conditions for growth were 20 MPa and 42°C for strain 19R1-5, and 10 MPa and 43°C for strain 29R7-12. Bacterial (endo)spores were observed in both the enrichment and pure cultures examined, suggesting that these piezophilic members were derived from microbial communities buried in the ~20 million-year-old coal-bearing sediments after the long-term survival as spores and that the deep biosphere may host more abundant gram-positive spore-forming bacteria and their spores than hitherto recognized.

Water Chemistry of Ephemeral Streams

Treesearch

J.L. Michael; W.P. Fowler; H.L. Gibbs; J.B. Fischer

1994-01-01

Four individual, but related, studies are currently being conducted to determine the effects of clearcut and seed tree reproduction cutting methods on stream chemistry, sedimentation, and bedload movement by monitoring herbicide and nutrient movement in stemflow, overland flow, streamflow, and zonal subsurface flow. Sediment movement is being quantified for...

EXTRACTION OF ORGANIC CONTAMINANTS FROM MARINE SEDIMENTS AND TISSUES USING MICROWAVE ENERGY

EPA Science Inventory

In this study, we compared microwave solvent extraction (MSE) to conventional methods for extracting organic contaminants from marine sediments and tissues with high and varying moisture content. The organic contaminants measured were polychlorinated biphenyl (PCB) congeners, chl...

Novel carotenol chlorin esters in marine sediments and water column particulate matter

NASA Astrophysics Data System (ADS)

Goericke, Ralf; Shankle, Amy; Repeta, Daniel J.

1999-09-01

Novel esters of carotenols and chlorins (carotenol chlorin esters, CCEs) were found in recent sediments from the California Borderlands, Monterey Bay, and the Peru and Oman margins. The chlorins associated with CCEs were pheophorbide a and pyropheophorbide a, degradation products of chlorophyll a. Isofucoxanthin-dehydrate and isofucoxanthinol-dehydrate and possibly their isomers, degradation products of fucoxanthin, were the only carotenols associated with CCEs. This result is surprising, considering that at least 8 major degradation products of fucoxanthin are present in organic-rich marine sediments. The carotenols of CCEs are likely derived from diatoms as these are the primary source for fucoxanthin in the marine environment. In sediments studied by us, CCEs contributed approximately 10% to total solvent extractable chlorins. The high relative concentrations of CCEs in these sediments suggest that CCEs are an important degradation product of chlorophyll a in some marine environments; a pathway hitherto unrecognized. Off Oman and Southern California we found CCEs in water column suspended particulate matter when diatoms dominated the phytoplankton community. By analogy with sterol chlorin esters, we suggest that CCEs are primarily produced by enzymatically mediated transesterifications in crustaceans grazing on diatoms. We are currently studying if CCEs are biomarkers for the grazing of crustaceans on diatoms, an important pathway of carbon remineralization in the marine environment.

How do natural, uncultivated microbes interact with organic matter? Insights from single cell genomics and metagenomics

NASA Astrophysics Data System (ADS)

Lloyd, K. G.; Bird, J.; Schreiber, L.; Petersen, D.; Kjeldsen, K.; Schramm, A.; Stepanauskas, R.; Jørgensen, B. B.

2013-12-01

Since most of the microbes in marine sediments remain uncultured, little is known about the mechanisms by which these natural communities degrade organic matter (OM). Likewise, little is known about the make-up of labile OM in marine sediments beyond general functional classes such as proteins, carbohydrates, and lipids, measured as monomers. However, microbes have complex interactions with specific polymers within these functional classes, which can be indicated by a microbe's enzymatic toolkit. We found that four single cell genomes of archaea have very different peptidase compositions than four single cells of bacteria, suggesting that archaea and bacteria may play different roles in OM degradation. We also found that predicted extracellular cysteine peptidases, which require chemically reducing conditions, were common in IMG database metagenomes from marine sediments, and absent in those from seawater. This suggests that the pathways, and not just the rates, of OM degradation may differ between seawater and sediments. By comparing enzyme classes in different organisms, or in different types of marine environments, we present an emerging view of the microbial potential for specific carbon remineralization pathways in marine sediments. In addition, the methods we present hold promise for characterizing OM degradation in any environment where genomic information is available.

Evaporitic sedimentation in the Southeastern Anatolian Foreland Basin: New insights on the Neotethys closure

NASA Astrophysics Data System (ADS)

Yeşilova, Çetin; Helvacı, Cahit; Carrillo, Emilio

2018-07-01

We integrate stratigraphic, petrographic and geochemical analysis of subsurface data (wells) together with field surveys to study the sedimentation of a marginal Miocene sub-basin of the Southeastern Anatolian Foreland Basin (SEAFB; SE Turkey). This sub-basin, located in the Batman-Siirt region, is characterized by the existence of evaporites (carbonates, sulphates and chlorides) and alluvial detritus which were divided in the following five lithostratigraphic members, from older to younger: Lower and Upper Yapılar; and Lower, Middle and Upper Sulha. These members deposited in an epicontinental mudflat during the Early Miocene. Both the bromine content and the sulphur and oxygen isotope composition (δ34SV-CDT and δ18OV-SMOW) of halite and sulphates samples, respectively, also suggest a marine origin of the precipitation brines. However, influence of geothermal fluids and dissolution-and-re-precipitation of evaporites from uplifted areas in these brines, such as the Early Miocene members and/or Triassic units, is interpreted. Comparing and integrating our results with data documented in previous works, it is here recognized that the depositional model of the studied sub-basin differs from that which explain the coeval sedimentation of units situated in the western part of the SEAFB. Moreover, our model shows some depositional and paleoenvironmental similarities with Miocene evaporites located in the Mesopotamian Foreland Basin. This work provides valuable insights on the Middle Miocene Salinity Crisis which is related to the evolution of the Neotethys closure.

Estimation of subsurface thermal structure using sea surface height and sea surface temperature

NASA Technical Reports Server (NTRS)

Kang, Yong Q. (Inventor); Jo, Young-Heon (Inventor); Yan, Xiao-Hai (Inventor)

2012-01-01

A method of determining a subsurface temperature in a body of water is disclosed. The method includes obtaining surface temperature anomaly data and surface height anomaly data of the body of water for a region of interest, and also obtaining subsurface temperature anomaly data for the region of interest at a plurality of depths. The method further includes regressing the obtained surface temperature anomaly data and surface height anomaly data for the region of interest with the obtained subsurface temperature anomaly data for the plurality of depths to generate regression coefficients, estimating a subsurface temperature at one or more other depths for the region of interest based on the generated regression coefficients and outputting the estimated subsurface temperature at the one or more other depths. Using the estimated subsurface temperature, signal propagation times and trajectories of marine life in the body of water are determined.

A geologic framework for mineralization in the western Brooks Range

USGS Publications Warehouse

Young, Lorne E.

2004-01-01

The Brooks Range is a 950-km-long north-vergent fold and thrust belt, which was formed during Mesozoic convergence of the continental Arctic Alaska terrane and the oceanic Angayucham terrane and was further shortened and uplifted in Tertiary time. The Arctic Alaska terrane consists of parautochthonous rocks and the Endicott Mountains and De Long Mountains subterranes. The Endicott Mountains allochthon of the western Brooks Range is the setting for many sulfide and barite occurrences, such as the supergiant Red Dog zinc-lead mine. Mineralization is sediment hosted and most commonly is present in black shale and carbonate turbidites of the Mississippian Kuna Formation. The reconstructed Kuna basin is a 200 by +600 km feature that represents the culmination of a remarkable chain of events that includes three fluvial-deltaic and two or more orogenic cycles, Middle Devonian to Mississippian episodes of extension and igneous activity, and the emergence of a seaward Lower Proterozoic landmass that may have constituted a barrier to marine circulation. Mississippian extension and related horst-and-graben architecture in the western Brooks Range is manifested in part by strong facies variability between coeval units of allochthons and structural plates. Shallow marine to possibly nonmarine arkose, platform to shelf carbonate, slope-to-basin shale, chert and carbonate turbidites, and submarine volcanic rocks are all represented in Mississippian time. The structural setting of Mississippian sedimentation, volcanism, and mineralization in the Kuna basin may be comparable to documented Devono-Mississippian extensional sags or half-grabens in the subsurface north of the Brooks Range. Climate, terrestrial ecosystems, multiple fluvial-deltaic aquifers, and structural architecture affected the liberation, movement, and redeposition of metals in ways that are incompletely understood.

MORPHOLOGICAL AND CULTURAL COMPARISON OF MICROORGANISMS IN SURFACE SOIL AND SUBSURFACE SEDIMENTS AT A PRISTINE STUDY SITE IN OKLAHOMA (JOURNAL VERSION)

EPA Science Inventory

Surface-soil and subsurface microfloras at the site of a shallow aquifer in Oklahoma were examined and compared with respect to (1) total and viable cell numbers, (2) colony and cell types that grew on various plating media, (3) cell morphologies seen in flotation films stripped ...

Depositional environments and processes in Upper Cretaceous nonmarine and marine sediments, Ocean Point dinosaur locality, North Slope, Alaska

USGS Publications Warehouse

Phillips, R.L.

2003-01-01

A 178-m-thick stratigraphic section exposed along the lower Colville River in northern Alaska, near Ocean Point, represents the uppermost part of a 1500 m Upper Cretaceous stratigraphic section. Strata exposed at Ocean Point are assigned to the Prince Creek and Schrader Bluff formations. Three major depositional environments are identified consisting, in ascending order, of floodplain, interdistributary-bay, and shallow-marine shelf. Nonmarine strata, comprising the lower 140 m of this section, consist of fluvial distributaries, overbank sediments, tephra beds, organic-rich beds, and vertebrate remains. Tephras yield isotopic ages between 68 and 72.9 Ma, generally consistent with paleontologic ages of late Campanian-Maastrichtian determined from dinosaur remains, pollen, foraminifers, and ostracodes. Meandering low-energy rivers on a low-gradient, low-relief floodplain carried a suspended-sediment load. The rivers formed multistoried channel deposits (channels to 10 m deep) as well as solitary channel deposits (channels 2-5 m deep). Extensive overbank deposits resulting from episodic flooding formed fining-upward strata on the floodplain. The fining-upward strata are interbedded with tephra and beds of organic-rich sediment. Vertical-accretion deposits containing abundant roots indicate a sheet flood origin for many beds. Vertebrate and nonmarine invertebrate fossils along with plant debris were locally concentrated in the floodplain sediment. Deciduous conifers as well as abundant wetland plants, such as ferns, horsetails, and mosses, covered the coastal plain. Dinosaur skeletal remains have been found concentrated in floodplain sediments in organic-rich bone beds and as isolated bones in fluvial channel deposits in at least nine separate horizons within a 100-m-thick interval. Arenaceous foraminifers in some organic-rich beds and shallow fluvial distributaries indicate a lower coastal plain environment with marginal marine (bay) influence. Marginal marine strata representing interdistributary bay deposits overlie the nonmarine beds and comprise about 15 m of section. Extensive vegetated sand flats, shoals, and shallow channels overlain by shallow bay deposits (less than 7 m deep), containing storm-generated strata characterize the marginal marine beds. Abundant bioturbation and roots characterize the stratigraphic lowest bay deposits; bioturbated sediment, pelecypods, barnacles, and benthic microfossils are found in the overlying bay storm deposits. The sediments abruptly change upward from hummocky cross-stratified bay deposits to a muddy marsh deposit containing shallow organic-rich channels to prograding nonmarine to marginal marine beds. Transgressive, abundantly fossiliferous shallow-marine strata more than 13 m thick comprise the uppermost exposures at Ocean Point. The marine beds overlie nonmarine and bay strata and represent an environment dominated episodically by storms. The age of the marginal marine and marine beds is late Maastrichtian based on pollen. ?? 2003 Elsevier Ltd. All rights reserved.

Salinity shifts in marine sediment: Importance of number of fluctuation rather than their intensities on bacterial denitrifying community.

PubMed

Zaghmouri, Imen; Michotey, Valerie D; Armougom, Fabrice; Guasco, Sophie; Bonin, Patricia C

2018-05-01

The sensitivity of denitrifying community to salinity fluctuations was studied in microcosms filled with marine coastal sediments subjected to different salinity disturbances over time (sediment under frequent salinity changes vs sediment with "stable" salinity pattern). Upon short-term salinity shift, denitrification rate and denitrifiers abundance showed high resistance whatever the sediment origin is. Denitrifying community adapted to frequent salinity changes showed high resistance when salinity increases, with a dynamic nosZ relative expression level. Marine sediment denitrifying community, characterized by more stable pattern, was less resistant when salinity decreases. However, after two successive variations of salinity, it shifted toward the characteristic community of fluctuating conditions, with larger proportion of Pseudomonas-nosZ, exhibiting an increase of nosZ relative expression level. The impact of long-term salinity variation upon bacterial community was confirmed at ribosomal level with a higher percentage of Pseudomonas and lower proportion of nosZII clade genera. Copyright © 2018 Elsevier Ltd. All rights reserved.

Marine dredged sediments as new materials resource for road construction.

PubMed

Siham, Kamali; Fabrice, Bernard; Edine, Abriak Nor; Patrick, Degrugilliers

2008-01-01

Large volumes of sediments are dredged each year in Europe in order to maintain harbour activities. With the new European Union directives, harbour managers are encouraged to find environmentally sound solutions for these materials. This paper investigates the potential uses of Dunkirk marine dredged sediment as a new material resource for road building. The mineralogical composition of sediments is evaluated using X-ray diffraction and microscopy analysis. Since sediments contain a high amount of water, a dewatering treatment has been used. Different suitable mixtures, checking specific geotechnical criteria as required in French standards, are identified. The mixtures are then optimized for an economical reuse. The mechanical tests conducted on these mixtures are compaction, bearing capacity, compression and tensile tests. The experimental results show the feasibility of the beneficial use of Dunkirk marine dredged sand and sediments as a new material for the construction of foundation and base layers for roads. Further research is now needed to prove the resistance of this new material to various environmental impacts (e.g., frost damage).

Use of 16S rRNA-targeted oligonucleotide probes to investigate the distribution of sulphate-reducing bacteria in estuarine sediments.

PubMed

Purdy, K J.; Nedwell, D B.; Embley, T M.; Takii, S

2001-07-01

The distribution of sulphate-reducing bacteria (SRBs) in three anaerobic sediments, one predominantly freshwater and low sulphate and two predominantly marine and high sulphate, on the River Tama, Tokyo, Japan, was investigated using 16S rRNA-targeted oligonucleotide probes. Hybridisation results and sulphate reduction measurements indicated that SRBs are a minor part of the bacterial population in the freshwater sediments. Only Desulfobulbus and Desulfobacterium were detected, representing 1.6% of the general bacterial probe signal. In contrast, the SRB community detected at the two marine-dominated sites was larger and more diverse, representing 10-11.4% of the bacterial signal and with Desulfobacter, Desulfovibrio, Desulfobulbus and Desulfobacterium detected. In contrast to previous reports our results suggest that Desulfovibrio may not always be the most abundant SRB in anaerobic sediments. Acetate-utilising Desulfobacter were the dominant SRB in the marine-dominated sediments, and Desulfobulbus and Desulfobacterium were active in low-sulphate sediments, where they may utilise electron acceptors other than sulphate.

The Scientific and Societal Need for Accurate Global Remote Sensing of Marine Suspended Sediments

NASA Technical Reports Server (NTRS)

Acker, James G.

2006-01-01

Population pressure, commercial development, and climate change are expected to cause continuing alteration of the vital oceanic coastal zone environment. These pressures will influence both the geology and biology of the littoral, nearshore, and continental shelf regions. A pressing need for global observation of coastal change processes is an accurate remotely-sensed data product for marine suspended sediments. The concentration, delivery, transport, and deposition of sediments is strongly relevant to coastal primary production, inland and coastal hydrology, coastal erosion, and loss of fragile wetland and island habitats. Sediment transport and deposition is also related to anthropogenic activities including agriculture, fisheries, aquaculture, harbor and port commerce, and military operations. Because accurate estimation of marine suspended sediment concentrations requires advanced ocean optical analysis, a focused collaborative program of algorithm development and assessment is recommended, following the successful experience of data refinement for remotely-sensed global ocean chlorophyll concentrations.

Loess Plateau storage of Northeastern Tibetan Plateau-derived Yellow River sediment

PubMed Central

Nie, Junsheng; Stevens, Thomas; Rittner, Martin; Stockli, Daniel; Garzanti, Eduardo; Limonta, Mara; Bird, Anna; Andò, Sergio; Vermeesch, Pieter; Saylor, Joel; Lu, Huayu; Breecker, Daniel; Hu, Xiaofei; Liu, Shanpin; Resentini, Alberto; Vezzoli, Giovanni; Peng, Wenbin; Carter, Andrew; Ji, Shunchuan; Pan, Baotian

2015-01-01

Marine accumulations of terrigenous sediment are widely assumed to accurately record climatic- and tectonic-controlled mountain denudation and play an important role in understanding late Cenozoic mountain uplift and global cooling. Underpinning this is the assumption that the majority of sediment eroded from hinterland orogenic belts is transported to and ultimately stored in marine basins with little lag between erosion and deposition. Here we use a detailed and multi-technique sedimentary provenance dataset from the Yellow River to show that substantial amounts of sediment eroded from Northeast Tibet and carried by the river's upper reach are stored in the Chinese Loess Plateau and the western Mu Us desert. This finding revises our understanding of the origin of the Chinese Loess Plateau and provides a potential solution for mismatches between late Cenozoic terrestrial sedimentation and marine geochemistry records, as well as between global CO2 and erosion records. PMID:26449321

Using a forensic science approach to minimize environmental contamination and to identify microfibres in marine sediments.

PubMed

Woodall, Lucy C; Gwinnett, Claire; Packer, Margaret; Thompson, Richard C; Robinson, Laura F; Paterson, Gordon L J

2015-06-15

There is growing evidence of extensive pollution of the environment by microplastic, with microfibres representing a large proportion of the microplastics seen in marine sediments. Since microfibres are ubiquitous in the environment, present in the laboratory air and water, evaluating microplastic pollution is difficult. Incidental contamination is highly likely unless strict control measures are employed. Here we describe methods developed to minimize the amount of incidental post-sampling contamination when quantifying marine microfibre pollution. We show that our protocol, adapted from the field of forensic fibre examination, reduces fibre abundance by 90% and enables the quick screening of fibre populations. These methods therefore allow an accurate estimate of microplastics polluting marine sediments. In a case study from a series of samples collected on a research vessel, we use these methods to highlight the prevalence of microfibres as marine microplastics. Copyright © 2015 The Authors. Published by Elsevier Ltd.. All rights reserved.

Dynamic modeling of environmental risk associated with drilling discharges to marine sediments.

PubMed

Durgut, İsmail; Rye, Henrik; Reed, Mark; Smit, Mathijs G D; Ditlevsen, May Kristin

2015-10-15

Drilling discharges are complex mixtures of base-fluids, chemicals and particulates, and may, after discharge to the marine environment, result in adverse effects on benthic communities. A numerical model was developed to estimate the fate of drilling discharges in the marine environment, and associated environmental risks. Environmental risk from deposited drilling waste in marine sediments is generally caused by four types of stressors: oxygen depletion, toxicity, burial and change of grain size. In order to properly model these stressors, natural burial, biodegradation and bioturbation processes were also included. Diagenetic equations provide the basis for quantifying environmental risk. These equations are solved numerically by an implicit-central differencing scheme. The sediment model described here is, together with a fate and risk model focusing on the water column, implemented in the DREAM and OSCAR models, both available within the Marine Environmental Modeling Workbench (MEMW) at SINTEF in Trondheim, Norway. Copyright © 2015 Elsevier Ltd. All rights reserved.

Transport and deposition of the fire biomarker levoglucosan across the tropical North Atlantic Ocean

NASA Astrophysics Data System (ADS)

Schreuder, Laura T.; Hopmans, Ellen C.; Stuut, Jan-Berend W.; Sinninghe Damsté, Jaap S.; Schouten, Stefan

2018-04-01

Biomass burning impacts biogeochemical cycling, vegetation dynamics and climate. However, interactions between fire, climate and vegetation are not well understood and therefore studies have attempted to reconstruct fire and vegetation history under different climatic conditions using sedimentary archives. Here we focus on levoglucosan, a thermal by-product of cellulose generated during biomass burning, and, therefore, a potential fire biomarker in the marine sedimentary archive. However, before levoglucosan can be applied as a biomass burning proxy in marine sediments, there is a need for studies on how levoglucosan is transported to the marine environment, how it is reflecting biomass burning on continents, as well as the fate of levoglucosan in the marine water column and during deposition in marine sediments. Here we present analyses of levoglucosan, using an improved Ultra High Pressure Liquid Chromatography-Electro Spray Ionization/High Resolution Mass Spectrometry (UHPLC-ESI/HRMS) method, in atmospheric particles, in particulate matter settling through the water column and in marine surface sediments on a longitudinal transect crossing the tropical North Atlantic Ocean at 12°N. Levoglucosan was detected in the atmosphere, although in low concentration, possibly due to the sampled particle size, the source area of the aerosols, or the short time interval of sampling by which large burning events may have been missed. In sinking particles in the tropical North Atlantic Ocean we find that levoglucosan deposition is influenced by a mineral ballast effect associated with marine biogenic particles, and that levoglucosan is not transported in association with mineral dust particles. Highest levoglucosan concentrations and seasonal differences in sinking particles were found close to continents and low concentrations and seasonal differences were found in the open ocean. Close to Africa, levoglucosan concentration is higher during winter, reflecting seasonal burning in northwestern Africa. However, close to South America levoglucosan concentrations appear to be affected by riverine transport from the Amazon River. In surface sediments close to South America, levoglucosan concentration is higher than in the middle of the Atlantic Ocean, implying that here the influence from the South American continent is important and perennial. Our study provides evidence that degradation of levoglucosan during settling in the marine water column is not substantial, but is substantial at the sediment-water interface. Nevertheless, levoglucosan was detected in all surface sediments throughout the tropical North Atlantic, indicating its presence in the marine sedimentary record, which reveals the potential for levoglucosan as a biomass burning proxy in marine sediments.

Occurrences, composition profiles and source identifications of polycyclic aromatic hydrocarbons (PAHs), polybrominated diphenyl ethers (PBDEs) and polychlorinated biphenyls (PCBs) in ship ballast sediments.

PubMed

Su, Peng-Hao; Lv, Bao-Yi; Tomy, Gregg T; Xu, Jin-Xiang; Tian, Wen; Hou, Chun-Yan; Yin, Fang; Li, Yi-Fan; Feng, Dao-Lun

2017-02-01

The aim of this study was to investigate the levels of persistent organic pollutants (POPs) including polycyclic aromatic hydrocarbons (PAHs), polybrominated diphenyl ethers (PBDEs) and polychlorinated biphenyls (PCBs) in ship ballast sediments. The ballast sediment samples were collected from six merchant ships docked in 2015 in Jiangyin City, China. Ballast sediments represent a potential vector for the transport of POPs and invasive species between marine environments. An attempt was also made to determine the sources of these compounds in the ballast sediment. The results indicated ballast sediments generally contain greater amounts of BDE-209 and comparable amounts of PAHs, PBDEs (exclusive of BDE-209) and PCBs compared to those in marine surface sediments. Based on the sediment quality guidelines, PAHs and PCBs in ballast sediments were estimated to have median or high potential of posing ecological risks, respectively, to marine life if ballast sediments were disposed without specific treatment. POPs in ballast sediments were derived from multiple sources with atmospheric deposition being an important origin. Ship activities including diesel exhaust and illegal oil sewage discharge were considerable contributors of certain individual POPs to ballast sediments. Our study is important because it represents the first report on levels, health risk assessment and source apportionments of POPs in ballast sediments and is a first step in the implementation of specific ballast sediment management measures. Copyright © 2016 Elsevier Ltd. All rights reserved.

The microbial nitrogen cycling potential is impacted by polyaromatic hydrocarbon pollution of marine sediments

DOE PAGES

Scott, Nicole M.; Hess, Matthias; Bouskill, Nick J.; ...

2014-03-25

During hydrocarbon exposure, the composition and functional dynamics of marine microbial communities are altered, favoring bacteria that can utilize this rich carbon source. Initial exposure of high levels of hydrocarbons in aerobic surface sediments can enrich growth of heterotrophic microorganisms having hydrocarbon degradation capacity. As a result, there can be a localized reduction in oxygen potential within the surface layer of marine sediments causing anaerobic zones. We hypothesized that increasing exposure to elevated hydrocarbon concentrations would positively correlate with an increase in denitrification processes and the net accumulation of dinitrogen. This hypothesis was tested by comparing the relative abundance ofmore » genes associated with nitrogen metabolism and nitrogen cycling identified in 6 metagenomes from sediments contaminated by polyaromatic hydrocarbons from the Deepwater Horizon (DWH) oil spill in the Gulf of Mexico, and 3 metagenomes from sediments associated with natural oil seeps in the Santa Barbara Channel. An additional 8 metagenomes from uncontaminated sediments from the Gulf of Mexico were analyzed for comparison. We predicted relative changes in metabolite turnover as a function of the differential microbial gene abundances, which showed predicted accumulation of metabolites associated with denitrification processes, including anammox, in the contaminated samples compared to uncontaminated sediments, with the magnitude of this change being positively correlated to the hydrocarbon concentration and exposure duration. Furthermore, these data highlight the potential impact of hydrocarbon inputs on N cycling processes in marine sediments and provide information relevant for system scale models of nitrogen metabolism in affected ecosystems.« less

The microbial nitrogen cycling potential is impacted by polyaromatic hydrocarbon pollution of marine sediments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Scott, Nicole M.; Hess, Matthias; Bouskill, Nick J.

2014-03-25

During hydrocarbon exposure, the composition and functional dynamics of marine microbial communities are altered, favoring bacteria that can utilize this rich carbon source. Initial exposure of high levels of hydrocarbons in aerobic surface sediments can enrich growth of heterotrophic microorganisms having hydrocarbon degradation capacity. As a result, there can be a localized reduction in oxygen potential within the surface layer of marine sediments causing anaerobic zones. We hypothesized that increasing exposure to elevated hydrocarbon concentrations would positively correlate with an increase in denitrification processes and the net accumulation of dinitrogen. This hypothesis was tested by comparing the relative abundance ofmore » genes associated with nitrogen metabolism and nitrogen cycling identified in 6 metagenomes from sediments contaminated by polyaromatic hydrocarbons from the Deepwater Horizon (DWH) oil spill in the Gulf of Mexico, and 3 metagenomes from sediments associated with natural oil seeps in the Santa Barbara Channel. An additional 8 metagenomes from uncontaminated sediments from the Gulf of Mexico were analyzed for comparison. We predicted relative changes in metabolite turnover as a function of the differential microbial gene abundances, which showed predicted accumulation of metabolites associated with denitrification processes, including anammox, in the contaminated samples compared to uncontaminated sediments, with the magnitude of this change being positively correlated to the hydrocarbon concentration and exposure duration. These data highlight the potential impact of hydrocarbon inputs on N cycling processes in marine sediments and provide information relevant for system scale models of nitrogen metabolism in affected ecosystems« less

Mapping the spatial distribution of subsurface saline material in the Darling River valley

NASA Astrophysics Data System (ADS)

Triantafilis, John; Buchanan, Sam Mostyn

2010-02-01

In the Australian landscape larg stores of soluble salt are present naturally. In many cases it is attributable to salts entrapped as marine sediment in earlier geological time. At the district level, the need for information on the presence of saline subsurface material is increasing, particularly for its application to salinity hazard assessment and environmental management. This is the case in irrigated areas, where changes in hydrology can result in secondary salinisation. To reduce the expense, environmental studies use a regression relationship to make use of more readily observed measurements (e.g. electromagnetic (EM) data) which are strongly correlated with the variable of interest. In this investigation a methodology is outlined for mapping the spatial distribution of average subsurface (6-12 m) salinity (EC e — mS m - 1 ) using an environmental correlation with EM34 survey data collected across the Bourke Irrigation District (BID) in the Darling River valley. The EM34 is used in the horizontal dipole mode at coil configurations of 10 (EM34-10), 20 (EM34-20), and 40 (EM34-40). A multiple-linear regression (MLR) relationship is established between average subsurface EC e and the three EM34 signal data using a forward modeling stepwise linear modeling approach. The spatial distribution of average subsurface salinity generally reflects the known surface expression of point-source salinisation and provides information for future environmental monitoring and natural resource management. The generation of EM34 data on various contrived grids (i.e. 1, 1.5, 2. 2.5 and 3 km) indicates that in terms of accuracy, the data available on the 0.5 (RMSE = 188) and 1 km (RMSE = 283) grid are best, with the least biased predictions achieved using 1 (ME = - 1) and 2 km (ME = 12) grids. Viewing the spatial distribution of subsurface saline material showed that the 0.5 km spacing is optimal, particularly in order to account for short-range spatial variation between various physiographic units. The Relative Improvement (RI) shows that increasing EM grids from 1, 1.5, 2, 2.5 to 3 km gave RI of - 53, - 100%, - 107%, - 128% and - 140%, respectively. We conclude that at a minimum a 1 km grid is needed for reconnaissance EM34 surveying.

Archaeal community diversity and abundance changes along a natural salinity gradient in estuarine sediments

PubMed Central

Webster, Gordon; O'Sullivan, Louise A.; Meng, Yiyu; Williams, Angharad S.; Sass, Andrea M.; Watkins, Andrew J.; Parkes, R. John; Weightman, Andrew J.

2014-01-01

Archaea are widespread in marine sediments, but their occurrence and relationship with natural salinity gradients in estuarine sediments is not well understood. This study investigated the abundance and diversity of Archaea in sediments at three sites [Brightlingsea (BR), Alresford (AR) and Hythe (HY)] along the Colne Estuary, using quantitative real-time PCR (qPCR) of 16S rRNA genes, DNA hybridization, Archaea 16S rRNA and mcrA gene phylogenetic analyses. Total archaeal 16S rRNA abundance in sediments were higher in the low-salinity brackish sediments from HY (2–8 × 107 16S rRNA gene copies cm−3) than the high-salinity marine sites from BR and AR (2 × 104–2 × 107 and 4 × 106–2 × 107 16S rRNA gene copies cm−3, respectively), although as a proportion of the total prokaryotes Archaea were higher at BR than at AR or HY. Phylogenetic analysis showed that members of the ‘Bathyarchaeota’ (MCG), Thaumarchaeota and methanogenic Euryarchaeota were the dominant groups of Archaea. The composition of Thaumarchaeota varied with salinity, as only ‘marine’ group I.1a was present in marine sediments (BR). Methanogen 16S rRNA genes from low-salinity sediments at HY were dominated by acetotrophic Methanosaeta and putatively hydrogentrophic Methanomicrobiales, whereas the marine site (BR) was dominated by mcrA genes belonging to methylotrophic Methanococcoides, versatile Methanosarcina and methanotrophic ANME-2a. Overall, the results indicate that salinity and associated factors play a role in controlling diversity and distribution of Archaea in estuarine sediments. PMID:25764553

Distinct Bacterial Communities in Surficial Seafloor Sediments Following the 2010 Deepwater Horizon Blowout.

PubMed

Yang, Tingting; Speare, Kelly; McKay, Luke; MacGregor, Barbara J; Joye, Samantha B; Teske, Andreas

2016-01-01

A major fraction of the petroleum hydrocarbons discharged during the 2010 Macondo oil spill became associated with and sank to the seafloor as marine snow flocs. This sedimentation pulse induced the development of distinct bacterial communities. Between May 2010 and July 2011, full-length 16S rRNA gene clone libraries demonstrated bacterial community succession in oil-polluted sediment samples near the wellhead area. Libraries from early May 2010, before the sedimentation event, served as the baseline control. Freshly deposited oil-derived marine snow was collected on the surface of sediment cores in September 2010, and was characterized by abundantly detected members of the marine Roseobacter cluster within the Alphaproteobacteria. Samples collected in mid-October 2010 closest to the wellhead contained members of the sulfate-reducing, anaerobic bacterial families Desulfobacteraceae and Desulfobulbaceae within the Deltaproteobacteria, suggesting that the oil-derived sedimentation pulse triggered bacterial oxygen consumption and created patchy anaerobic microniches that favored sulfate-reducing bacteria. Phylotypes of the polycyclic aromatic hydrocarbon-degrading genus Cycloclasticus, previously found both in surface oil slicks and the deep hydrocarbon plume, were also found in oil-derived marine snow flocs sedimenting on the seafloor in September 2010, and in surficial sediments collected in October and November 2010, but not in any of the control samples. Due to the relative recalcitrance and stability of polycyclic aromatic compounds, Cycloclasticus represents the most persistent microbial marker of seafloor hydrocarbon deposition that we could identify in this dataset. The bacterial imprint of the DWH oil spill had diminished in late November 2010, when the bacterial communities in oil-impacted sediment samples collected near the Macondo wellhead began to resemble their pre-spill counterparts and spatial controls. Samples collected in summer of 2011 did not show a consistent bacterial community signature, suggesting that the bacterial community was no longer shaped by the DWH fallout of oil-derived marine snow, but instead by location-specific and seasonal factors.

Distinct Bacterial Communities in Surficial Seafloor Sediments Following the 2010 Deepwater Horizon Blowout

PubMed Central

Yang, Tingting; Speare, Kelly; McKay, Luke; MacGregor, Barbara J.; Joye, Samantha B.; Teske, Andreas

2016-01-01

A major fraction of the petroleum hydrocarbons discharged during the 2010 Macondo oil spill became associated with and sank to the seafloor as marine snow flocs. This sedimentation pulse induced the development of distinct bacterial communities. Between May 2010 and July 2011, full-length 16S rRNA gene clone libraries demonstrated bacterial community succession in oil-polluted sediment samples near the wellhead area. Libraries from early May 2010, before the sedimentation event, served as the baseline control. Freshly deposited oil-derived marine snow was collected on the surface of sediment cores in September 2010, and was characterized by abundantly detected members of the marine Roseobacter cluster within the Alphaproteobacteria. Samples collected in mid-October 2010 closest to the wellhead contained members of the sulfate-reducing, anaerobic bacterial families Desulfobacteraceae and Desulfobulbaceae within the Deltaproteobacteria, suggesting that the oil-derived sedimentation pulse triggered bacterial oxygen consumption and created patchy anaerobic microniches that favored sulfate-reducing bacteria. Phylotypes of the polycyclic aromatic hydrocarbon-degrading genus Cycloclasticus, previously found both in surface oil slicks and the deep hydrocarbon plume, were also found in oil-derived marine snow flocs sedimenting on the seafloor in September 2010, and in surficial sediments collected in October and November 2010, but not in any of the control samples. Due to the relative recalcitrance and stability of polycyclic aromatic compounds, Cycloclasticus represents the most persistent microbial marker of seafloor hydrocarbon deposition that we could identify in this dataset. The bacterial imprint of the DWH oil spill had diminished in late November 2010, when the bacterial communities in oil-impacted sediment samples collected near the Macondo wellhead began to resemble their pre-spill counterparts and spatial controls. Samples collected in summer of 2011 did not show a consistent bacterial community signature, suggesting that the bacterial community was no longer shaped by the DWH fallout of oil-derived marine snow, but instead by location-specific and seasonal factors. PMID:27679609

Investigation into spore coat properties for the rapid identification of endospores in marine sediments

NASA Astrophysics Data System (ADS)

Rattray, J. E.; Chakraborty, A.; Bernard, B. B.; Brooks, J.; Hubert, C. R.

2017-12-01

Understanding the sediment biogeography of dormant marine thermophilic bacterial endospores (thermospores) has the potential to assist locating and characterising working petroleum systems. The presence of thermospores in cold ocean environments suggests that distribution occurs via hydrocarbon seepage from thermally active reservoirs. Low abundance and endospore coat physiology mean nucleic acid based techniques have limited success for in situ detection of thermospores. Alternative rapid analytical methods are needed so we investigated using the Schaeffer-Fulton (malachite green and safranin) and DAPI (4',6-diamidino-2-phenylindole) staining techniques on thermospores from cultures and marine sediments. Sediment samples from 111 locations in the Eastern Gulf of Mexico (100 to 3300 m water depth; 6 to 600 km apart) were incubated at high temperature, followed by construction of 16S rRNA gene amplicon libraries (V3-V4 region; Illumina MiSeq) revealing enrichment of species-level thermospore OTUs. A sulfate reducing bacterium from site EGM080 was purified and classified based on its rRNA gene sequence as Desulfotomaculum geothermicum. Prior to thermospore staining the culture was kept in the death/ decline phase for 16 weeks to promote sporulation. Samples of D. geothermicum and the source marine sediment were fixed, stained then analysed using brightfield, phase contrast or fluorescence microscopy. Thermospores in pure culture were identified using phase contrast but were difficult to observe in the sediment sample due to particle aggregation. The Schaeffer-Fulton technique aided thermospore identification in a complex sediment sample matrix as thermospores were stained bright green, and also revealed that there were only spores and no (red stained) vegetative cells in the culture. Treatment with DAPI gave dull fluorescing cells but also provided insight into the behaviour of thermospores in sediment suspensions. Spores in the culture medium were free floating but in the sediment suspension they were only attached to aggregated fluorescing material. Further investigation into thermospore association with bioparticles could further our understanding of the passive dispersal of spores in marine environments.

Organic matter degradation in surface sediments of the Changjiang estuary: Evidence from amino acids.

PubMed

Wang, Kui; Chen, Jianfang; Jin, Haiyan; Li, Hongliang; Zhang, Weiyan

2018-05-12

Organic matter degradation is a key component of the processes of carbon preservation and burial in seafloor sediments. The aim of this study was to explore organic matter degradation state within the open-shelf Changjiang Estuary of the East China Sea, using an amino acids-based degradation index (DI) in conjunction with information about organic matter source (marine versus terrestrial), bottom water oxygenation state, and sediment grain size. The relative molar percentages of 17 individual amino acids (characterized using principal component analysis) in surface sediments indicate that organic matter is degraded to varying extents across the estuary seabed. Sediments with DI >0 (relatively labile) were found mostly within a coastal hypoxic area. Sediments of DI less than -1 (relatively refractory) were found near the Changjiang River mouth and the northern and southern parts of the central shelf. We consider DI to be a more reliable indicator of degradation than simple ratios of AAs. DI was inversely correlated with the proportion of terrestrial organic material (F t ) in the sediments, indicating that relatively fresh/labile organic matter was generally associated with marine sources. DI was significantly correlated with F t and bottom water apparent oxygen utilization (AOU bot ) together. The parameter DI and the (labile) amino acid tyrosine were highest in hypoxic areas, suggesting the presence of relatively fresh organic matter, probably due to a combination of marine-source inputs and better preservation of organic matter in the silt and clay sediments of these areas (as compared to sandy sediments). Less degraded organic matter with high amino acids was also favorable to benthic animals. Overall, sedimentary estuarine organic matter was least degraded in areas characterized by marine sources of organic matter, low-oxygen conditions, and fine-grained sediments. Copyright © 2018 Elsevier B.V. All rights reserved.

Pleistocene to Holocene contrasts in organic matter production and preservation on the California continental margin

USGS Publications Warehouse

Dean, W.E.; Gardner, J.V.

1998-01-01

Organic matter in sediments from cores collected from the upper continental slope (200-2700 m) off California and southern Oregon shows marked differences in concentration and marine character between the last glacial interval (ca. 24-10 ka) and either Holocene time or last interstadial (oxygen isotope stage 3, ca. 60-24 ka). In general, sediments deposited during Holocene time and stage 3 contain higher amounts of marine organic matter than those deposited during the last glacial interval, and this contrast is greatest in cores collected off southern California. The most profound differences in stage 3 sediments are between predominantly bioturbated sediments and occasional interbeds of laminated sediments. The sediments are from cores collected within the present oxygen minimum zone on the upper continental slope from as far north as the Oregon-California border to as far south as Point Conception. These upper Pleistocene laminated sediments contain more abundant hydrogen-rich (type II) marine algal organic matter than even surface sediments that have large amounts of nonrefractory organic matter. The stable carbon-isotopic composition of the organic matter does not change with time between bioturbated and laminated sediments, indicating that the greater abundance of type II organic matter in the laminated sediments is not due to a change in source but rather represents a greater degree of production and preservation of marine organic matter. The presence of abundant, well-preserved organic matter supports the theory that the oxygen minimum zone in the northeastern Pacific Ocean was more intense, and possibly anoxic, during late Pleistocene time as a result of increased coastal upwelling that enhanced algal productivity.

The Classification and Geomorphic Implications of Thaw Lakes on the Arctic Coastal Plain, Alaska

DTIC Science & Technology

1975-12-01

Plain is underlain by ice-rich marine sediments , the product of several marine transgressions and regressions. Numerous thaw lake basins of...variable morphology and distribution have developed on the perennially frozen sediments (permafrost) of this low-lying plain. Most notable are the large...mechanism of thaw lake formation was recognized whereby sediment laden ice rafts initiated thawing of the permafrost and formation of lake basins

Thermal alteration of organic matter in recent marine sediments. 2: Isoprenoids. [Tanner Basin off Southern California

NASA Technical Reports Server (NTRS)

Ikan, R.; Baedecker, M. J.; Kaplan, I. R.

1974-01-01

A series of isoprenoid compounds were isolated from a heat treated marine sediment (from Tanner Basin) which were not present in the original sediment. Among the compounds identified were: phytol, dihydrophytol, c-18-isoprenoid ketone, phytanic and pristanic acids, c-19 and c-20-monoolefines, and the alkanes pristane and phytane. The significance and possible routes leading to these compounds is discussed.

Size-dependent δ18O and δ13C variations in a planktic foraminiferal Neogloboquadrina pachyderma (sinistral) record from Chukchi Plateau: implications for (sub)surface water conditions in the western Arctic Ocean over the past 50 ka

NASA Astrophysics Data System (ADS)

Wang, R.; Xiao, W.; Mei, J.; Polyak, L.

2017-12-01

Oxygen and carbon stable isotopes in planktic foraminifera Neogloboquadrina pachyderma (sinistral) (Nps) have a promising potential for reconstructing (sub)surface water conditions in the Arctic Ocean. Size-dependent (63-154 µm, 154-250 µm, and >250 µm) Nps δ18O and δ13C were measured along with Ice Rafted Debris (IRD) and scanned XRF Ca and Mn contents in sediment core ARC3-P31 from the Chukchi Plateau (434 m water depth) representing paleoceanographic conditions during the last 50 ka (Marine Isotope Stages 1-3). While the interval corresponding to the Last Glacial Maximum is represented by a hiatus, the following deglaciation is clearly marked by a strong depletion in both δ18O and δ13C in all Nps size fractions along with a peak in detrital carbonate IRD indicative of the Canadian Arctic Archipelago provenance. This pronounced feature presumably indicates a collapse event of the northwestern Laurentide Ice Sheet, potentially linked to the rising sea level. In the overall record under study, average values of Nps δ18O and δ13C fluctuate in the range of 1.2-2.1‰ and 0.3-0.9 ‰, respectively. Mid-size Nps δ18O values (154-250 µm) are in average lighter by 0.2-0.5 ‰ than those of small (63-154 µm) and large (>250 µm) Nps tests. This offset may indicate a different water-depth dwelling, possibly affected by a relatively warm subsurface Atlantic water.

Stochastic Seismic Inversion and Migration for Offshore Site Investigation in the Northern Gulf of Mexico

NASA Astrophysics Data System (ADS)

Son, J.; Medina-Cetina, Z.

2017-12-01

We discuss the comparison between deterministic and stochastic optimization approaches to the nonlinear geophysical full-waveform inverse problem, based on the seismic survey data from Mississippi Canyon in the Northern Gulf of Mexico. Since the subsea engineering and offshore construction projects actively require reliable ground models from various site investigations, the primary goal of this study is to reconstruct the accurate subsurface information of the soil and rock material profiles under the seafloor. The shallow sediment layers have naturally formed heterogeneous formations which may cause unwanted marine landslides or foundation failures of underwater infrastructure. We chose the quasi-Newton and simulated annealing as deterministic and stochastic optimization algorithms respectively. Seismic forward modeling based on finite difference method with absorbing boundary condition implements the iterative simulations in the inverse modeling. We briefly report on numerical experiments using a synthetic data as an offshore ground model which contains shallow artificial target profiles of geomaterials under the seafloor. We apply the seismic migration processing and generate Voronoi tessellation on two-dimensional space-domain to improve the computational efficiency of the imaging stratigraphical velocity model reconstruction. We then report on the detail of a field data implementation, which shows the complex geologic structures in the Northern Gulf of Mexico. Lastly, we compare the new inverted image of subsurface site profiles in the space-domain with the previously processed seismic image in the time-domain at the same location. Overall, stochastic optimization for seismic inversion with migration and Voronoi tessellation show significant promise to improve the subsurface imaging of ground models and improve the computational efficiency required for the full waveform inversion. We anticipate that by improving the inversion process of shallow layers from geophysical data will better support the offshore site investigation.

Tracing the incorporation of carbon into benthic foraminiferal calcite following the Deepwater Horizon event.

PubMed

Schwing, Patrick T; Chanton, Jeffrey P; Romero, Isabel C; Hollander, David J; Goddard, Ethan A; Brooks, Gregg R; Larson, Rebekka A

2018-06-01

Following the Deepwater Horizon (DWH) event in 2010, hydrocarbons were deposited on the continental slope in the northeastern Gulf of Mexico through marine oil snow sedimentation and flocculent accumulation (MOSSFA). The objective of this study was to test the hypothesis that benthic foraminiferal δ 13 C would record this depositional event. From December 2010 to August 2014, a time-series of sediment cores was collected at two impacted sites and one control site in the northeastern Gulf of Mexico. Short-lived radioisotopes ( 210 Pb and 234 Th) were employed to establish the pre-DWH, DWH, and post-DWH intervals. Benthic foraminifera (Cibicidoides spp. and Uvigerina spp.) were isolated from these intervals for δ 13 C measurement. A modest (0.2-0.4‰), but persistent δ 13 C depletion in the DWH intervals of impacted sites was observed over a two-year period. This difference was significantly beyond the pre-DWH (background) variability and demonstrated that benthic foraminiferal calcite recorded the depositional event. The longevity of the depletion in the δ 13 C record suggested that benthic foraminifera may have recorded the change in organic matter caused by MOSSFA from 2010 to 2012. These findings have implications for assessing the subsurface spatial distribution of the DWH MOSSFA event. Copyright © 2018 Elsevier Ltd. All rights reserved.

Seismic images of a tectonic subdivision of the Greenville Orogen beneath lakes Ontario and Erie

USGS Publications Warehouse

Forsyth, D. A.; Milkereit, B.; Davidson, A.; Hanmer, S.; Hutchinson, Deborah R.; Hinze, W. J.; Mereu, R.F.

1994-01-01

New seismic data from marine air-gun and Vibroseis profiles in Lake Ontario and Lake Erie provide images of subhorizontal Phanerozoic sediments underlain by a remarkable series of easterly dipping reflections that extends from the crystalline basement to the lower crust. These reflections are interpreted as structural features of crustal-scale subdivisions within the Grenville Orogen. Broadly deformed, imbricated, and overlapping thrust sheets within the western Central Metasedimentary Belt are succeeded to the west by a complex zone of easterly dipping, apparent thrust faults that are interpreted as a southwest subsurface extension of the boundary zone between the Central Metasedimentary Belt and the Central Gneiss Belt. The interpreted Central Metasedimentary Belt boundary zone has a characteristic magnetic anomaly that provides a link from the adjacent ends of lakes Ontario and Erie to structures exposed 150 km to the north. Less reflective, west-dipping events are interpreted as structures within the eastern Central Gneiss Belt. The seismic interpretation augments current tectonic models that suggest the exposed ductile structures formed at depth as a result of crustal shortening along northwest-verging thrust faults. Relatively shallow reflections across the boundary region suggest local, Late Proterozoic extensional troughs containing post-Grenville sediments, preserved possibly as a result of pre-Paleozoic reactivation of basement structures.

Sediment data collected in 2010 from Cat Island, Mississippi

USGS Publications Warehouse

Buster, Noreen A.; Kelso, Kyle W.; Miselis, Jennifer L.; Kindinger, Jack G.

2014-01-01

Scientists from the U.S. Geological Survey, St. Petersburg Coastal and Marine Science Center, in collaboration with the U.S. Army Corps of Engineers, conducted geophysical and sedimentological surveys in 2010 around Cat Island, Mississippi, which is the westernmost island in the Mississippi-Alabama barrier island chain. The objective of the study was to understand the geologic evolution of Cat Island relative to other barrier islands in the northern Gulf of Mexico by identifying relationships between the geologic history, present day morphology, and sediment distribution. This data series serves as an archive of terrestrial and marine sediment vibracores collected August 4-6 and October 20-22, 2010, respectively. Geographic information system data products include marine and terrestrial core locations and 2007 shoreline data. Additional files include marine and terrestrial core description logs, core photos, results of sediment grain-size analyses, optically stimulated luminescence dating and carbon-14 dating locations and results, Field Activity Collection System logs, and formal Federal Geographic Data Committee metadata.

Sources of suspended sediment in the Lower Roanoke River, NC

NASA Astrophysics Data System (ADS)

Jalowska, A. M.; McKee, B. A.; Rodriguez, A. B.; Laceby, J. P.

2015-12-01

The Lower Roanoke River, NC, extends 220 km from the fall line to the bayhead delta front in the Albemarle Sound. The Lower Roanoke is almost completely disconnected from the upper reaches by a series of dams, with the furthest downstream dam located at the fall line. The dams effectively restrict the suspended sediment delivery from headwaters, making soils and sediments from the Lower Roanoke River basin, the sole source of suspended sediment. In flow-regulated rivers, bank erosion, especially mass wasting, is the major contributor to the suspended matter. Additional sources of the suspended sediment considered in this study are river channel, surface soils, floodplain surface sediments, and erosion of the delta front and prodelta. Here, we examine spatial and temporal variations in those sources. This study combined the use of flow and grain size data with a sediment fingerprinting method, to examine the contribution of surface and subsurface sediments to the observed suspended sediment load along the Lower Roanoke River. The fingerprinting method utilized radionuclide tracers 210Pb (natural atmospheric fallout), and 137Cs (produced by thermonuclear bomb testing). The contributions of surface and subsurface sources to the suspended sediment were calculated with 95% confidence intervals using a Monte-Carlo numerical mixing model. Our results show that with decreasing river slope and changing hydrography along the river, the contribution of surface sediments increases and becomes a main source of sediments in the Roanoke bayhead delta. At the river mouth, the surface sediment contribution decreases and is replaced by sediments eroded from the delta front and prodelta. The area of high surface sediment contribution is within the middle and upper parts of the delta, which are considered net depositional. Our study demonstrates that floodplains, often regarded to be a sediment sink, are also a sediment source, and they should be factored into sediment, carbon and nutrient budgets.

Sediment impacts on marine sponges.

PubMed

Bell, James J; McGrath, Emily; Biggerstaff, Andrew; Bates, Tracey; Bennett, Holly; Marlow, Joseph; Shaffer, Megan

2015-05-15

Changes in sediment input to marine systems can influence benthic environments in many ways. Sponges are important components of benthic ecosystems world-wide and as sessile suspension feeders are likely to be impacted by changes in sediment levels. Despite this, little is known about how sponges respond to changes in settled and suspended sediment. Here we review the known impacts of sedimentation on sponges and their adaptive capabilities, whilst highlighting gaps in our understanding of sediment impacts on sponges. Although the literature clearly shows that sponges are influenced by sediment in a variety of ways, most studies confer that sponges are able to tolerate, and in some cases thrive, in sedimented environments. Critical gaps exist in our understanding of the physiological responses of sponges to sediment, adaptive mechanisms, tolerance limits, and the particularly the effect of sediment on early life history stages. Copyright © 2015 Elsevier Ltd. All rights reserved.

Microbial dehalogenation of organohalides in marine and estuarine environments.

PubMed

Zanaroli, Giulio; Negroni, Andrea; Häggblom, Max M; Fava, Fabio

2015-06-01

Marine sediments are the ultimate sink and a major entry way into the food chain for many highly halogenated and strongly hydrophobic organic pollutants, such as polychlorinated biphenyls (PCBs), polychlorinated dibenzo-p-dioxins (PCDDs), polybrominated diphenylethers (PBDEs) and 1,1,1-trichloro-2,2-bis(p-chlorophenyl)ethane (DDT). Microbial reductive dehalogenation in anaerobic sediments can transform these contaminants into less toxic and more easily biodegradable products. Although little is still known about the diversity of respiratory dehalogenating bacteria and their catabolic genes in marine habitats, the occurrence of dehalogenation under actual site conditions has been reported. This suggests that the activity of dehalogenating microbes may contribute, if properly stimulated, to the in situ bioremediation of marine and estuarine contaminated sediments. Copyright © 2015 Elsevier Ltd. All rights reserved.

Sedimentary architecture and depositional environment of Kudat Formation, Sabah, Malaysia

NASA Astrophysics Data System (ADS)

Ghaheri, Samira; Suhaili, Mohd; Sapari, Nasiman; Momeni, Mohammadsadegh

2017-12-01

Kudat Formation originated from deep marine environment. Three lithofacies association of deep marine turbidity channel was discovered in three Members of the Kudat Formation in Kudat Peninsula, Sabah, Malaysia. Turbidite and deep marine architecture elements was described based on detailed sedimentological studies. Four architecture elements were identified based on each facies association and their lithology properties and character: inner external levee that was formed by turbidity flows spill out from their confinement of channel belt; Lobes sheet that was formed during downslope debris flows associated with levee; Channel fill which sediments deposited from high to low density currents with different value of sediment concentration; and overbank terrace which was formed by rapid suspension sedimentation. The depositional environment of Kudat Formation is shelf to deep marine fan.

Steps Towards Understanding Large-scale Deformation of Gas Hydrate-bearing Sediments

NASA Astrophysics Data System (ADS)

Gupta, S.; Deusner, C.; Haeckel, M.; Kossel, E.

2016-12-01

Marine sediments bearing gas hydrates are typically characterized by heterogeneity in the gas hydrate distribution and anisotropy in the sediment-gas hydrate fabric properties. Gas hydrates also contribute to the strength and stiffness of the marine sediment, and any disturbance in the thermodynamic stability of the gas hydrates is likely to affect the geomechanical stability of the sediment. Understanding mechanisms and triggers of large-strain deformation and failure of marine gas hydrate-bearing sediments is an area of extensive research, particularly in the context of marine slope-stability and industrial gas production. The ultimate objective is to predict severe deformation events such as regional-scale slope failure or excessive sand production by using numerical simulation tools. The development of such tools essentially requires a careful analysis of thermo-hydro-chemo-mechanical behavior of gas hydrate-bearing sediments at lab-scale, and its stepwise integration into reservoir-scale simulators through definition of effective variables, use of suitable constitutive relations, and application of scaling laws. One of the focus areas of our research is to understand the bulk coupled behavior of marine gas hydrate systems with contributions from micro-scale characteristics, transport-reaction dynamics, and structural heterogeneity through experimental flow-through studies using high-pressure triaxial test systems and advanced tomographical tools (CT, ERT, MRI). We combine these studies to develop mathematical model and numerical simulation tools which could be used to predict the coupled hydro-geomechanical behavior of marine gas hydrate reservoirs in a large-strain framework. Here we will present some of our recent results from closely co-ordinated experimental and numerical simulation studies with an objective to capture the large-deformation behavior relevant to different gas production scenarios. We will also report on a variety of mechanically relevant test scenarios focusing on effects of dynamic changes in gas hydrate saturation, highly uneven gas hydrate distributions, focused fluid migration and gas hydrate production through depressurization and CO2 injection.

Reverse trends of TEX86 temperature in coastal areas of the East China Sea over the last 100 years: implication for global warming and regional circulation

NASA Astrophysics Data System (ADS)

Cao, Y.; Xing, L.; Zhang, T.

2017-12-01

To reconstruct and compare the SST changes in different regions of the ECS over the last 100 years, in this study, we analyzed iGDGTs compounds and TEX86 index in two sediment cores (DH5-1 and DH6-2) from the inner shelf of the East China Sea (ECS). GDGT-0 and GDGT-5 in the two cores account for 80% of iGDGTs, significantly more abundant than the other iGDGTs compounds. It is also found that iGDGTs are mainly derived from marine Thaumarchaeota. TEXH86 temperatures varied from 17 °C to 22 °C (average 19.4 °C), showing a gradual increase in Core DH5-1 near the Changjiang River Estuary, corresponding to global warming and temperature rise in the ECS over the last 100 years. However, in Core DH6-2 further away from the Changjiang River Estuary, TEXH86 temperatures gradually decreased over the last 80 years with a range of 15.3 °C-18.3 °C, which is attributed to the strengthened near-shore Kuroshio Branch Current transporting more subsurface cold water to the ECS coastal area. In future, more sites should be investigated to confirm the range of the coastal area where the decrease in SST is caused by upwelling subsurface water.

Petroleum system elements within the Late Cretaceous and Early Paleogene sediments of Nigeria's inland basins: An integrated sequence stratigraphic approach

NASA Astrophysics Data System (ADS)

Dim, Chidozie Izuchukwu Princeton; Onuoha, K. Mosto; Okeugo, Chukwudike Gabriel; Ozumba, Bertram Maduka

2017-06-01

Sequence stratigraphic studies have been carried out using subsurface well and 2D seismic data in the Late Cretaceous and Early Paleogene sediments of Anambra and proximal onshore section of Niger Delta Basin in the Southeastern Nigeria. The aim was to establish the stratigraphic framework for better understanding of the reservoir, source and seal rock presence and distribution in the basin. Thirteen stratigraphic bounding surfaces (consisting of six maximum flooding surfaces - MFSs and seven sequence boundaries - SBs) were recognized and calibrated using a newly modified chronostratigraphic chart. Stratigraphic surfaces were matched with corresponding foraminiferal and palynological biozones, aiding correlation across wells in this study. Well log sequence stratigraphic correlation reveals that stratal packages within the basin are segmented into six depositional sequences occurring from Late Cretaceous to Early Paleogene age. Generated gross depositional environment maps at various MFSs show that sediment packages deposited within shelfal to deep marine settings, reflect continuous rise and fall of sea levels within a regressive cycle. Each of these sequences consist of three system tracts (lowstand system tract - LST, transgressive system tract - TST and highstand system tract - HST) that are associated with mainly progradational and retrogradational sediment stacking patterns. Well correlation reveals that the sand and shale units of the LSTs, HSTs and TSTs, that constitute the reservoir and source/seal packages respectively are laterally continuous and thicken basinwards, due to structural influences. Result from interpretation of seismic section reveals the presence of hanging wall, footwall, horst block and collapsed crest structures. These structural features generally aid migration and offer entrapment mechanism for hydrocarbon accumulation. The combination of these reservoirs, sources, seals and trap elements form a good petroleum system that is viable for hydrocarbon exploration and development.

PEaCH4 v.2.0: A modelling platform to predict early diagenetic processes in marine sediments with a focus on biogenic methane - Case study: Offshore Namibia

NASA Astrophysics Data System (ADS)

Arning, Esther T.; Häußler, Steffen; van Berk, Wolfgang; Schulz, Hans-Martin

2016-07-01

The modelling of early diagenetic processes in marine sediments is of interest in marine science, and in the oil and gas industry, here, especially with respect to methane occurrence and gas hydrate formation as resources. Early diagenesis in marine sediments evolves from a complex web of intertwining (bio)geochemical reactions. It comprises microbially catalysed reactions and inorganic mineral-water-gas interactions. A model that will describe and consider all of these reactions has to be complex. However, it should be user-friendly, as well as to be applicable for a broad community and not only for experts in the field of marine chemistry. The presented modelling platform PeaCH4 v.2.0 combines both aspects, and is Microsoft Excel©-based. The modelling tool is PHREEQC (version 2), a computer programme for speciation, batch-reaction, one-dimensional transport, and inverse geochemical calculations. The conceptual PEaCH4 model is based on the conversion of sediment-bound degradable organic matter. PEaCH4 v.2.0 was developed to quantify and predict early diagenetic processes in marine sediments with the focus on biogenic methane formation and its phase behaviour, and allows carbon mass balancing. In regard to the irreversible degradation of organic matter, it comprises a "reaction model" and a "kinetic model" to predict methane formation. Both approaches differ in their calculations and outputs as the "kinetic model" considers the modelling time to integrate temperature dependent biogenic methane formation in its calculations, whereas the "reaction model" simply relies on default organic matter degradation. With regard to the inorganic mineral-water-gas interactions, which are triggered by irreversible degradation of organic matter, PEaCH4 v.2.0 is based on chemical equilibrium thermodynamics, appropriate mass-action laws, and their temperature dependent equilibrium constants. The programme is exemplarily presented with the example of upwelling sediments off Namibia, ODP Leg 175, Site 1082. The application demonstrates that the modelling platform PEaCH4 v.2.0 provides a user-friendly, but complex scientific tool that delivers retraceable information about early diagenetic processes and products in marine sediments.

Campanian coastal plain sediments in southeastern Missouri and southern Illinois - Significance to the early geologic history of the northern Mississippi Embayment

USGS Publications Warehouse

Harrison, R.W.; Litwin, R.J.

1997-01-01

Basal Cretaceous deposits in the northernmost part of the Mississippi Embayment in southeastern Missouri and southern Illinois have been correlated previously with the Tuscaloosa Formation of Alabama. New palynological data indicate that these clastic deposits comprise non-marine and marine sections of middle to late Campanian age. They consist of a lower non-marine deposit, the herein newly proposed Post Creek Formation, and an upper marine deposit that we correlate in part with the Coffee Sand of Tennessee. These Campanian deposits overlie a diachronous Mesozoic paleosol, Little Bear Formation, and are progressively overlain by the McNairy Sand of early to middle Maastrichtian age, the Owl Creek Formation of middle to late Maastrichtian age, and the Porters Creek Clay of late Paleocene age. Outcrops and subsurface occurrences of the Post Creek Formation are widespread around the northern margin of the Mississippi Embayment. In contrast, the Coffee Sand is more restricted in distribution, and is present in southeast Missouri only as an outlier. Extensive occurrences of the Coffee Sand are found in Tennessee and further south in the embayment. This study shows that (1) the basal Cretaceous deposits in the northern Mississippi Embayment are not equivalent to the Tuscaloosa Formation, but are entirely separate stratigraphic units, (2) the shallow Cretaceous Interior Seaway occupied the northernmost part of the present Mississippi Embayment by the late Campanian, and (3) a large part of the northern embayment may have experienced an episode of uplift and erosion during the latest Campanian or earliest Maastrichtian, prior to deposition of McNairy Sand. ?? 1997 Academic Press Limited.

A giant sediment trap in the Florida keys

USGS Publications Warehouse

Shinn, E.A.; Reich, C.D.; Locker, S.D.; Hine, A.C.

1996-01-01

Aerial photography, high-resolution seismic profiling, coring and jet probing have revealed a large sediment-filled sinkhole in the Key Largo National Marine Sanctuary off Key Largo, Florida. The 600-m-diameter feature straddles coral reef and carbonate-sand facies and contains >55 m of marine lime sand and aragonite mud. Bulk 14C age determinations of mud from a 30- m sediment core indicate infilling rates exceeding 20 m/ka between 3 and 5.6 ka. The total thickness and nature of the sediment near the base of the sinkhole are not known.

Microscale geochemical gradients in Hanford 300 Area sediment biofilms and influence of uranium

DOE Office of Scientific and Technical Information (OSTI.GOV)

Nguyen, Hung D.; Cao, Bin; Mishra, Bhoopesh

2012-01-01

The presence and importance of microenvironments in the subsurface at contaminated sites were suggested by previous geochemical studies. However, no direct quantitative characterization of the geochemical microenvironments had been reported. We quantitatively characterized microscale geochemical gradients (dissolved oxygen (DO), H(2), pH, and redox potential) in Hanford 300A subsurface sediment biofilms. Our results revealed significant differences in geochemical parameters across the sediment biofilm/water interface in the presence and absence of U(VI) under oxic and anoxic conditions. While the pH was relatively constant within the sediment biofilm, the redox potential and the DO and H(2) concentrations were heterogeneous at the microscale (<500-1000more » μm). We found microenvironments with high DO levels (DO hotspots) when the sediment biofilm was exposed to U(VI). On the other hand, we found hotspots (high concentrations) of H(2) under anoxic conditions both in the presence and in the absence of U(VI). The presence of anoxic microenvironments inside the sediment biofilms suggests that U(VI) reduction proceeds under bulk oxic conditions. To test this, we operated our biofilm reactor under air-saturated conditions in the presence of U(VI) and characterized U speciation in the sediment biofilm. U L(III)-edge X-ray absorption spectroscopy (XANES and EXAFS) showed that 80-85% of the U was in the U(IV) valence state.« less

Microscale geochemical gradients in Hanford 300 Area sediment biofilms and influence of uranium.

PubMed

Nguyen, Hung Duc; Cao, Bin; Mishra, Bhoopesh; Boyanov, Maxim I; Kemner, Kenneth M; Fredrickson, Jim K; Beyenal, Haluk

2012-01-01

The presence and importance of microenvironments in the subsurface at contaminated sites were suggested by previous geochemical studies. However, no direct quantitative characterization of the geochemical microenvironments had been reported. We quantitatively characterized microscale geochemical gradients (dissolved oxygen (DO), H(2), pH, and redox potential) in Hanford 300A subsurface sediment biofilms. Our results revealed significant differences in geochemical parameters across the sediment biofilm/water interface in the presence and absence of U(VI) under oxic and anoxic conditions. While the pH was relatively constant within the sediment biofilm, the redox potential and the DO and H(2) concentrations were heterogeneous at the microscale (<500-1000 μm). We found microenvironments with high DO levels (DO hotspots) when the sediment biofilm was exposed to U(VI). On the other hand, we found hotspots (high concentrations) of H(2) under anoxic conditions both in the presence and in the absence of U(VI). The presence of anoxic microenvironments inside the sediment biofilms suggests that U(VI) reduction proceeds under bulk oxic conditions. To test this, we operated our biofilm reactor under air-saturated conditions in the presence of U(VI) and characterized U speciation in the sediment biofilm. U L(III)-edge X-ray absorption spectroscopy (XANES and EXAFS) showed that 80-85% of the U was in the U(IV) valence state. Copyright © 2011 Elsevier Ltd. All rights reserved.

Hydrocarbon composition and concentrations in the Gulf of Mexico sediments in the 3 years following the Macondo well blowout.

PubMed

Babcock-Adams, Lydia; Chanton, Jeffrey P; Joye, Samantha B; Medeiros, Patricia M

2017-10-01

In April of 2010, the Macondo well blowout in the northern Gulf of Mexico resulted in an unprecedented release of oil into the water column at a depth of approximately 1500 m. A time series of surface and subsurface sediment samples were collected to the northwest of the well from 2010 to 2013 for molecular biomarker and bulk carbon isotopic analyses. While no clear trend was observed in subsurface sediments, surface sediments (0-3 cm) showed a clear pattern with total concentrations of n-alkanes, unresolved complex mixture (UCM), and petroleum biomarkers (terpanes, hopanes, steranes) increasing from May to September 2010, peaking in late November 2010, and strongly decreasing in the subsequent years. The peak in hydrocarbon concentrations were corroborated by higher organic carbon contents, more depleted Δ 14 C values and biomarker ratios similar to those of the initial MC252 crude oil reported in the literature. These results indicate that at least part of oil discharged from the accident sedimented to the seafloor in subsequent months, resulting in an apparent accumulation of hydrocarbons on the seabed by the end of 2010. Sediment resuspension and transport or biodegradation may account for the decrease in sedimented oil quantities in the years following the Macondo well spill. Copyright © 2017 Elsevier Ltd. All rights reserved.

Determination of alcohol sulfates and alcohol ethoxysulfates in marine and river sediments using liquid chromatography-tandem mass spectrometry.

PubMed

Fernández-Ramos, C; Ballesteros, O; Blanc, R; Zafra-Gómez, A; Camino-Sánchez, F J; Navalón, A; Vílchez, J L

2013-10-15

A novel and successful method has been developed for the identification and quantification of alcohol sulfates (AS) homologues and alcohol ethoxysulfates (AES) ethoxymers in marine and river sediment samples. The method involves the extraction of 5.00 g of dry sample with methanol using pressurized liquid extraction (PLE) and liquid chromatography-tandem mass spectrometry (LC-MS/MS). 2-Octylbenzene sulfonic acid sodium salt (2ØC8-LAS) was used as internal standard. The analytical methods were applied to marine sediments collected from the coast of Almeria (South-east Spain) and river sediments collected from the Monachil river (Granada, South-east Spain). For AS homologues, the found limits of detection were 0.04-0.08 μg g(-1) for marine and river sediments. For AES ethoxymers, the found limits of detection were 0.03-0.09 μg g(-1) and 0.06-0.22 μg g(-1) for marine and river sediments, respectively. The highest concentrations of AS and AES were found in river sediment samples. Significant differences were also observed between the behavior of short-chain compounds (C12) and long-chain compounds (C14 to C18). The influence of the physic-chemical properties of water on the occurrence of these compounds was also evaluated, and differences between long- and short-chain compounds were also observed. Additionally, principal components analyses were carried out in order to study the relationship between variables and to evaluate the sources of data variability and behavior patterns. Finally, important conclusions were drawn regarding the environmental behavior of AS and AES. Copyright © 2013 Elsevier B.V. All rights reserved.

Sources and fate of microplastics in marine and beach sediments of the Southern Baltic Sea-a preliminary study.

PubMed

Graca, Bożena; Szewc, Karolina; Zakrzewska, Danuta; Dołęga, Anna; Szczerbowska-Boruchowska, Magdalena

2017-03-01

Microplastics' (particles size ≤5 mm) sources and fate in marine bottom and beach sediments of the brackish are strongly polluted Baltic Sea have been investigated. Microplastics were extracted using sodium chloride (1.2 g cm -3 ). Their qualitative identification was conducted using micro-Fourier-transform infrared spectroscopy (μFT-IR). Concentration of microplastics varied from 25 particles kg -1 d.w. at the open sea beach to 53 particles kg -1  d.w. at beaches of strongly urbanized bay. In bottom sediments, microplastics concentration was visibly lower compared to beach sediments (0-27 particles kg -1  d.w.) and decreased from the shore to the open, deep-sea regions. The most frequent microplastics dimensions ranged from 0.1 to 2.0 mm, and transparent fibers were predominant. Polyester, which is a popular fabrics component, was the most common type of microplastic in both marine bottom (50%) and beach sediments (27%). Additionally, poly(vinyl acetate) used in shipbuilding as well as poly(ethylene-propylene) used for packaging were numerous in marine bottom (25% of all polymers) and beach sediments (18% of all polymers). Polymer density seems to be an important factor influencing microplastics circulation. Low density plastic debris probably recirculates between beach sediments and seawater in a greater extent than higher density debris. Therefore, their deposition is potentially limited and physical degradation is favored. Consequently, low density microplastics concentration may be underestimated using current methods due to too small size of the debris. This influences also the findings of qualitative research of microplastics which provide the basis for conclusions about the sources of microplastics in the marine environment.

Late Quaternary stratigraphy of the eastern Gulf of Maine

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bacchus, T.S.; Belknap, D.F.

1993-03-01

Five distinct seismic facies describe the glacial, glacial-marine and postglacial sediments in the eastern Gulf of Maine. Regional cross-sections clearly document differences in the glacial-marine and postglacial stratigraphy between basins south of Truxton Swell, and Jordan basin to its north. Till occurs throughout the region as a thin veneer within basins, but thickens significantly over the ridges and swells separating basins. The ubiquitous presence of till suggests grounded ice occupied this area some time in the recent past. Ice-proximal glacial-marine (PGM) facies sediments of varying thickness mantle the entire area, occurring as a draped unit over pre-existing topography. Transitional glacial-marinemore » (TGM) facies also occur as a draped unit, but they show onlap onto basin margins. Sediments of the TGM facies are restricted to areas south of Truxton Swell. Ice-distal glacial-marine (DGM) facies sediments also mantle the entire area, but they occur primarily as a ponded, infilling unit. The nature and distribution of these glacial-marine facies within the eastern Gulf of Maine documents changes in the environment of deposition during deglaciation. In the authors model PGM facies sediments are considered to represent settling through the water column of coarse material from the base of an ice shelf. TGM facies sediments indicate retreat of this ice margin coupled with calving of large icebergs with significant amounts of coarse debris, DGM facies sediments indicate further retreat of the ice margin and a lessening of the influence of icebergs. Stepwise ice-margin retreat from south to north through a series of grounding lines and associated pinning points is evident by these time transgressive sedimentary facies that can be correlated across the region.« less

Detection of recycled marine sediment components in crater lake fluids using 129I

NASA Astrophysics Data System (ADS)

Fehn, U.; Snyder, G. T.; Varekamp, J. C.

2002-06-01

Crater lakes provide time-integrated samples of volcanic fluids, which may carry information on source components. We tested under what circumstances 129I concentrations can be used for the detection of a signal derived from the recycling of marine sediments in subduction zone magmatism. The 129I system has been successfully used to determine origin and pathways in other volcanic fluids, but the application of this system to crater lakes is complicated by the presence of anthropogenic 129I, related to recent nuclear activities. Results are reported from four crater lakes, associated with subducting crust varying in age between 23 and 98 Ma. The 129I/I ratios determined for Copahue, Argentina, (129I/I=700×10-15) and White Island, New Zealand, (129I/I=284×10-15) demonstrate the presence of iodine in the crater lakes that was derived from recycled marine sediments. A comparison to the ages of the subducted sediments in these two cases indicates that the ratios likely reflect iodine remobilization from the entire sediment column that was undergoing subduction. While the 129I signals in Poás and Rincón de la Vieja, Costa Rica also demonstrate the presence of recycled iodine, the relatively high percentage of meteoric water in these lakes prevents a reliable determination of source ages. The observed high concentrations of iodine and 129I/I ratios substantially below current surface values strongly argue for the presence of recycled marine components in the arc magmas of all four cases. Components from subducted marine sediments can be quantified and related to specific parts of the sediment column in cases where the iodine concentration in the lake waters exceeds 5 μM.

Fingerprinting of bed sediment in the Tay Estuary, Scotland: an environmental magnetism approach

NASA Astrophysics Data System (ADS)

Jenkins, Pierre A.; Duck, Rob W.; Rowan, John S.; Walden, John

Sediment fingerprinting is commonly used for sediment provenance studies in lakes, rivers and reservoirs and on hillslopes and floodplains. This investigation explores the mixing of terrestrial and marine-derived sediment in the Tay Estuary, Scotland, using mineral magnetic attributes for fingerprinting. Samples representative of the estuary sediments and of four sources (end-members) were subjected to a suite of magnetic susceptibility and remanence measurements. Sediment samples from the beds of the Rivers Tay and Earn represented fluvial inputs while samples from the Angus and Fife coasts represented marine input. Multivariate discriminant and factor analysis showed that the sources could be separated on the basis of six magnetic parameters in a simple multivariate unmixing model to identify source contributions to estuarine bed sediments. Multi-domain magnetite signatures, characteristic of unweathered bedrock, dominate the magnetic measurements. Overall contributions of 3% from the River Earn, 17% from the River Tay, 29% from the Angus coast and 51% from the Fife coast source end-members, demonstrated the present-day regime of marine sediment derivation in the Tay Estuary. However, this conceals considerable spatial variability both along-estuary and in terms of sub-environments, with small-scale variations in sediment provenance reflecting local morphology, particularly areas of channel convergence.

Effect of Redox Conditions on Bacterial Community Structure in Baltic Sea Sediments with Contrasting Phosphorus Fluxes

PubMed Central

Steenbergh, Anne K.; Bodelier, Paul L. E.; Slomp, Caroline P.; Laanbroek, Hendrikus J.

2014-01-01

Phosphorus release from sediments can exacerbate the effect of eutrophication in coastal marine ecosystems. The flux of phosphorus from marine sediments to the overlying water is highly dependent on the redox conditions at the sediment-water interface. Bacteria are key players in the biological processes that release or retain phosphorus in marine sediments. To gain more insight in the role of bacteria in phosphorus release from sediments, we assessed the effect of redox conditions on the structure of bacterial communities. To do so, we incubated surface sediments from four sampling sites in the Baltic Sea under oxic and anoxic conditions and analyzed the fingerprints of the bacterial community structures in these incubations and the original sediments. This paper describes the effects of redox conditions, sampling station, and sample type (DNA, RNA, or whole-cell sample) on bacterial community structure in sediments. Redox conditions explained only 5% of the variance in community structure, and bacterial communities from contrasting redox conditions showed considerable overlap. We conclude that benthic bacterial communities cannot be classified as being typical for oxic or anoxic conditions based on community structure fingerprints. Our results suggest that the overall structure of the benthic bacterial community has only a limited impact on benthic phosphate fluxes in the Baltic Sea. PMID:24667801

Effect of redox conditions on bacterial community structure in Baltic Sea sediments with contrasting phosphorus fluxes.

PubMed

Steenbergh, Anne K; Bodelier, Paul L E; Slomp, Caroline P; Laanbroek, Hendrikus J

2014-01-01

Phosphorus release from sediments can exacerbate the effect of eutrophication in coastal marine ecosystems. The flux of phosphorus from marine sediments to the overlying water is highly dependent on the redox conditions at the sediment-water interface. Bacteria are key players in the biological processes that release or retain phosphorus in marine sediments. To gain more insight in the role of bacteria in phosphorus release from sediments, we assessed the effect of redox conditions on the structure of bacterial communities. To do so, we incubated surface sediments from four sampling sites in the Baltic Sea under oxic and anoxic conditions and analyzed the fingerprints of the bacterial community structures in these incubations and the original sediments. This paper describes the effects of redox conditions, sampling station, and sample type (DNA, RNA, or whole-cell sample) on bacterial community structure in sediments. Redox conditions explained only 5% of the variance in community structure, and bacterial communities from contrasting redox conditions showed considerable overlap. We conclude that benthic bacterial communities cannot be classified as being typical for oxic or anoxic conditions based on community structure fingerprints. Our results suggest that the overall structure of the benthic bacterial community has only a limited impact on benthic phosphate fluxes in the Baltic Sea.

Geomorphic field experiment to quantify grain size and biotic influence on riverbed sedimentation dynamics in a dry-season reservoir, Russian River, CA

NASA Astrophysics Data System (ADS)

Florsheim, J. L.; Ulrich, C.; Hubbard, S. S.; Borglin, S. E.; Rosenberry, D. O.

2013-12-01

An important problem in geomorphology is to differentiate between abiotic and biotic fine sediment deposition on coarse gravel river beds because of the potential for fine sediment to infiltrate and clog the pore space between gravel clasts. Infiltration of fines into gravel substrate is significant because it may reduce permeability; therefore, differentiation of abiotic vs. biotic sediment helps in understanding the causes of such changes. We conducted a geomorphic field experiment during May to November 2012 in the Russian River near Wohler, CA, to quantify biotic influence on riverbed sedimentation in a small temporary reservoir. The reservoir is formed upstream of a small dam inflated during the dry season to enhance water supply pumping from the aquifer below the channel; however, some flow is maintained in the reservoir to facilitate fish outmigration. In the Russian River field area, sediment transport dynamics during storm flows prior to dam inflation created an alternate bar-riffle complex with a coarser gravel surface layer over the relatively finer gravel subsurface. The objective of our work was to link grain size distribution and topographic variation to biotic and abiotic sediment deposition dynamics in this field setting where the summertime dam annually increases flow depth and inundates the bar surfaces. The field experiment investigated fine sediment deposition over the coarser surface sediment on two impounded bars upstream of the reservoir during an approximately five month period when the temporary dam was inflated. The approach included high resolution field surveys of topography, grain size sampling and sediment traps on channel bars, and laboratory analyses of grain size distributions and loss on ignition (LOI) to determine biotic content. Sediment traps were installed at six sites on bars to measure sediment deposited during the period of impoundment. Preliminary results show that fine sediment deposition occurred at all of the sample sites, and is spatially variable--likely influenced by topographic differences that moderate flow over the bars. Traps initially filled with coarse gravel from the bar's surface trapped more fine sediment than traps initially filled with material from the bar's subsurface sediment, suggesting that a gravel bar's armor layer may enhance the source of material available to infiltrate into the channel substrate. LOI analysis indicates that both surface and subsurface samples have organic content ranging between 2 and 4%, following winter storm flows prior to impoundment. In contrast, samples collected after the 5-month impoundment have higher organic content ranging between 5 and 11%. This work aids in differentiating between abiotic and biotic fine sediment deposition in order to understand their relative potential for clogging gravel substrate.

Molybdenum Accumulation in Marine Sediments as an Indicator of Hypoxic Water Conditions (NACAETAC)

EPA Science Inventory

Direct monitoring of hypoxic water column conditions over large spatial and temporal extents is difficult due to the substantial logistical and financial investment required. Recent studies have indicated that concentrations of molybdenum (Mo) in marine sediments may serve as a u...

California State Waters Map Series: offshore of Carpinteria, California

USGS Publications Warehouse

Johnson, Samuel Y.; Dartnell, Peter; Cochrane, Guy R.; Golden, Nadine E.; Phillips, Eleyne L.; Ritchie, Andrew C.; Kvitek, Rikk G.; Greene, H. Gary; Endris, Charles A.; Seitz, Gordon G.; Sliter, Ray W.; Erdey, Mercedes D.; Wong, Florence L.; Gutierrez, Carlos I.; Krigsman, Lisa M.; Draut, Amy E.; Hart, Patrick E.; Johnson, Samuel Y.; Cochran, Susan A.

2013-01-01

In 2007, the California Ocean Protection Council initiated the California Seafloor Mapping Program (CSMP), designed to create a comprehensive seafloor map of high-resolution bathymetry, marine benthic habitats, and geology within the 3-nautical-mile limit of California’s State Waters. The CSMP approach is to create highly detailed seafloor maps through collection, integration, interpretation, and visualization of swath sonar data, acoustic backscatter, seafloor video, seafloor photography, high-resolution seismic-reflection profiles, and bottom-sediment sampling data. The map products display seafloor morphology and character, identify potential marine benthic habitats, and illustrate both the surficial seafloor geology and shallow (to about 100 m) subsurface geology. The Offshore of Carpinteria map area lies within the central Santa Barbara Channel region of the Southern California Bight. This geologically complex region forms a major biogeographic transition zone, separating the cold-temperate Oregonian province north of Point Conception from the warm-temperate California province to the south. The map area is in the southern part of the Western Transverse Ranges geologic province, which is north of the California Continental Borderland. Significant clockwise rotation—at least 90°—since the early Miocene has been proposed for the Western Transverse Ranges province, and the region is presently undergoing north-south shortening. The small city of Carpinteria is the most significant onshore cultural center in the map area; the smaller town of Summerland lies west of Carpinteria. These communities rest on a relatively flat coastal piedmont that is surrounded on the north, east, and west by hilly relief on the flanks of the Santa Ynez Mountains. El Estero, a salt marsh on the coast west of Carpinteria, is an ecologically important coastal estuary. Southeast of Carpinteria, the coastal zone is narrow strip containing highway and railway transportation corridors and a few small residential clusters. Rincon Point is a well-known world-class surf break, and Rincon Island, constructed for oil and gas production, lies offshore of Punta Gorda. The steep bluffs backing the coastal strip are geologically unstable, and coastal erosion problems are ongoing in the map area; most notably, landslides in 2005 struck the small coastal community of La Conchita, engulfing houses and killing ten people. The Offshore of Carpinteria map area lies in the central part of the Santa Barbara littoral cell, whose littoral drift is to the east-southeast. Drift rates have been estimated to be about 400,000 tons/yr at Santa Barbara Harbor (about 15 km west of Carpinteria). At the east end of the littoral cell, eastward-moving sediment is trapped by Hueneme and Mugu Canyons and then transported to the deep-water Santa Monica Basin. Sediment supply to the western and central part of the littoral cell is largely from relatively small transverse coastal watersheds, which have an estimated cumulative annual sediment flux of 640,000 tons/yr. The much larger Ventura and Santa Clara Rivers, the mouths of which are about 25 to 30 km southeast of Carpinteria, yield an estimated 3.4 million tons of sediment annually, the coarser sediment load generally moving southeast, down the coast, and the finer sediment load moving both upcoast and offshore. The offshore part of the map area consists of a relatively flat and shallow continental shelf, which dips so gently (about 0.4° to 0.5°) that water depths at the 3-nautical-mile limit of California’s State Waters are 40 to 45 m. This part of the Santa Barbara Channel is relatively well protected from large Pacific swells from the north and northwest by Point Conception and from the south and southwest by offshore islands and banks. Fair-weather wave base is typically shallower than 20-m water depth, but winter storms are capable of resuspending fine-grained sediments in 30 m of water, and so shelf sediments in the map area probably are remobilized on an annual basis. The shelf is underlain by variable amounts of upper Quaternary shelf, estuarine, and fluvial sediments that thicken to the south. Seafloor habitats in the broad Santa Barbara Channel region consist of significant amounts of soft sediment and isolated areas of rocky habitat that support kelp-forest communities nearshore and rocky-reef communities in deep water. The potential marine benthic habitat types mapped in the Offshore of Carpinteria map area are directly related to its Quaternary geologic history, geomorphology, and active sedimentary processes. These potential habitats lie within the Shelf (continental shelf) megahabitat, dominated by a flat seafloor and substrates formed from deposition of fluvial and marine sediment during sea-level rise. This fairly homogeneous seafloor provides promising habitat for groundfish, crabs, shrimp, and other marine benthic organisms. The only significant interruptions to this homogeneous habitat type are the exposures of hard, irregular, and hummocky sedimentary bedrock and coarse-grained sediment where potential habitats for rockfish and related species exist.

Biogenic disturbance determines invasion success in a subtidal soft-sediment system.

PubMed

Lohrer, Andrew M; Chiaroni, Luca D; Hewitt, Judi E; Thrush, Simon F

2008-05-01

Theoretically, disturbance and diversity can influence the success of invasive colonists if (1) resource limitation is a prime determinant of invasion success and (2) disturbance and diversity affect the availability of required resources. However, resource limitation is not of overriding importance in all systems, as exemplified by marine soft sediments, one of Earth's most widespread habitat types. Here, we tested the disturbance-invasion hypothesis in a marine soft-sediment system by altering rates of biogenic disturbance and tracking the natural colonization of plots by invasive species. Levels of sediment disturbance were controlled by manipulating densities of burrowing spatangoid urchins, the dominant biogenic sediment mixers in the system. Colonization success by two invasive species (a gobiid fish and a semelid bivalve) was greatest in plots with sediment disturbance rates < 500 cm(3) x m(-2) x d(-1), at the low end of the experimental disturbance gradient (0 to > 9000 cm(3) x m(-2) x d(-1)). Invasive colonization declined with increasing levels of sediment disturbance, counter to the disturbance-invasion hypothesis. Increased sediment disturbance by the urchins also reduced the richness and diversity of native macrofauna (particularly small, sedentary, surface feeders), though there was no evidence of increased availability of resources with increased disturbance that would have facilitated invasive colonization: sediment food resources (chlorophyll a and organic matter content) did not increase, and space and access to overlying water were not limited (low invertebrate abundance). Thus, our study revealed the importance of biogenic disturbance in promoting invasion resistance in a marine soft-sediment community, providing further evidence of the valuable role of bioturbation in soft-sediment systems (bioturbation also affects carbon processing, nutrient recycling, oxygen dynamics, benthic community structure, and so on.). Bioturbation rates are influenced by the presence and abundance of large burrowing species (like spatangoid urchins). Therefore, mass mortalities of large bioturbators could inflate invasion risk and alter other aspects of ecosystem performance in marine soft-sediment habitats.

Supervised classification of continental shelf sediment off western Donegal, Ireland

NASA Astrophysics Data System (ADS)

Monteys, X.; Craven, K.; McCarron, S. G.

2017-12-01

Managing human impacts on marine ecosystems requires natural regions to be identified and mapped over a range of hierarchically nested scales. In recent years (2000-present) the Irish National Seabed Survey (INSS) and Integrated Mapping for the Sustainable Development of Ireland's Marine Resources programme (INFOMAR) (Geological Survey Ireland and Marine Institute collaborations) has provided unprecedented quantities of high quality data on Ireland's offshore territories. The increasing availability of large, detailed digital representations of these environments requires the application of objective and quantitative analyses. This study presents results of a new approach for sea floor sediment mapping based on an integrated analysis of INFOMAR multibeam bathymetric data (including the derivatives of slope and relative position), backscatter data (including derivatives of angular response analysis) and sediment groundtruthing over the continental shelf, west of Donegal. It applies a Geographic-Object-Based Image Analysis software package to provide a supervised classification of the surface sediment. This approach can provide a statistically robust, high resolution classification of the seafloor. Initial results display a differentiation of sediment classes and a reduction in artefacts from previously applied methodologies. These results indicate a methodology that could be used during physical habitat mapping and classification of marine environments.

Silicon Isotopes of Marine Pore Water: Tracking the Destiny of Marine Biogenic Opal

NASA Astrophysics Data System (ADS)

Cassarino, L.; Hendry, K. R.

2017-12-01

Silicon isotopes (δ30Si) are a powerful tool for the studying of the past and present silicon cycles, which is closely linked to the carbon cycle. Siliceous phytoplankton, such as diatoms, as one of the major conveyors of carbon to marine sediments. δ30Si from fossil diatoms has been shown to represent past silicic acid (DSi) utilization in the photic zone, since the lighter isotope is preferentially incorporated in their skeleton, the frustule. This assumes that species in the sediments depict past blooms and that frustules are preserved in their initial state during burial. Here we present new silicon isotopes data of sea water and pore water of deep marine sediments from two contrasted environments, the Equatorial Atlantic and West Antarctic Peninsula. δ30Si and DSi concentration, of both sea water and pore water, are negatively correlated. Marine biogenic opal dissolution can be tracked using δ30Si signature of pore water as lighter signals and high DSi concentrations are associated with the biogenic silica. Our data enhances post depositional and diagenesis processes during burial with a clear highlight on the sediment water interface exchanges.

Exploring Genomic Diversity Using Metagenomics of Deep-Sea Subsurface Microbes from the Louisville Seamount and the South Pacific Gyre

NASA Astrophysics Data System (ADS)

Tully, B. J.; Sylvan, J. B.; Heidelberg, J. F.; Huber, J. A.

2014-12-01

There are many limitations involved with sampling microbial diversity from deep-sea subsurface environments, ranging from physical sample collection, low microbial biomass, culturing at in situ conditions, and inefficient nucleic acid extractions. As such, we are continually modifying our methods to obtain better results and expanding what we know about microbes in these environments. Here we present analysis of metagenomes sequences from samples collected from 120 m within the Louisville Seamount and from the top 5-10cm of the sediment in the center of the south Pacific gyre (SPG). Both systems are low biomass with ~102 and ~104 cells per cm3 for Louisville Seamount samples analyzed and the SPG sediment, respectively. The Louisville Seamount represents the first in situ subseafloor basalt and the SPG sediments represent the first in situ low biomass sediment microbial metagenomes. Both of these environments, subseafloor basalt and sediments underlying oligotrophic ocean gyres, represent large provinces of the seafloor environment that remain understudied. Despite the low biomass and DNA generated from these samples, we have generated 16 near complete genomes (5 from Louisville and 11 from the SPG) from the two metagenomic datasets. These genomes are estimated to be between 51-100% complete and span a range of phylogenetic groups, including the Proteobacteria, Actinobacteria, Firmicutes, Chloroflexi, and unclassified bacterial groups. With these genomes, we have assessed potential functional capabilities of these organisms and performed a comparative analysis between the environmental genomes and previously sequenced relatives to determine possible adaptations that may elucidate survival mechanisms for these low energy environments. These methods illustrate a baseline analysis that can be applied to future metagenomic deep-sea subsurface datasets and will help to further our understanding of microbiology within these environments.

Uranium Biomineralization by Natural Microbial Phosphatase Activities in the Subsurface

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sobecky, Patricia A.

2015-04-06

In this project, inter-disciplinary research activities were conducted in collaboration among investigators at The University of Alabama (UA), Georgia Institute of Technology (GT), Lawrence Berkeley National Laboratory (LBNL), Brookhaven National Laboratory (BNL), the DOE Joint Genome Institute (JGI), and the Stanford Synchrotron Radiation Light source (SSRL) to: (i) confirm that phosphatase activities of subsurface bacteria in Area 2 and 3 from the Oak Ridge Field Research Center result in solid U-phosphate precipitation in aerobic and anaerobic conditions; (ii) investigate the eventual competition between uranium biomineralization via U-phosphate precipitation and uranium bioreduction; (iii) determine subsurface microbial community structure changes of Areamore » 2 soils following organophosphate amendments; (iv) obtain the complete genome sequences of the Rahnella sp. Y9-602 and the type-strain Rahnella aquatilis ATCC 33071 isolated from these soils; (v) determine if polyphosphate accumulation and phytate hydrolysis can be used to promote U(VI) biomineralization in subsurface sediments; (vi) characterize the effect of uranium on phytate hydrolysis by a new microorganism isolated from uranium-contaminated sediments; (vii) utilize positron-emission tomography to label and track metabolically-active bacteria in soil columns, and (viii) study the stability of the uranium phosphate mineral product. Microarray analyses and mineral precipitation characterizations were conducted in collaboration with DOE SBR-funded investigators at LBNL. Thus, microbial phosphorus metabolism has been shown to have a contributing role to uranium immobilization in the subsurface.« less

Investigating the use of paired Uk'37 and TEX86 measurements to reconstruct past sea surface and subsurface (thermocline) temperatures (Invited)

NASA Astrophysics Data System (ADS)

Castaneda, I. S.; Urann, B.; Phu, V.

2013-12-01

Two organic geochemical temperature proxies widely applied to marine sediments are the Uk'37 Index, based on long-chain alkenones produced by haptophyte algae, and TEX86, based on isoprenoid glycerol dialkyl glycerol tetraethers (GDGTs), produced by Thaumarchaeota. At some locations, temperature reconstructions based on Uk'37 and TEX86 are in agreement within the calibration errors of each proxy, while at other sites absolute Uk'37 and TEX86 reconstructed temperatures differ but both proxies reveal similar overall trends (e.g. Caley et al., 2011). In contrast, at other locations Uk'37 and TEX86 temperature reconstructions from the same samples yield dramatically different overall trends. Differences observed between Uk'37 and TEX86 temperature reconstructions have been attributed to a variety of factors including seasonal production biases, differences in preservation and lateral transport, and differences related to the depth habitat of the source organisms. An increasing number of studies have provided evidence that TEX86 likely reflects a subsurface water temperature in certain areas of the world's oceans and have used paired Uk'37 and TEX86 measurements to simultaneously examine sea surface and subsurface (in some cases thermocline) temperature variability (e.g. Lopes dos Santos et al., 2010; Rommerskirchen et al., 2011; Li et al., 2013). In the tropical N Atlantic, a distinctive signature of Atlantic Meridional Overturning Circulation (AMOC) slowdown is anticorrelated variation between surface and subsurface water temperatures (e.g. Chang et al., 2008; Zhang et al., 2007) where sea surface temperature (SST) cooling is accompanied by shallow subsurface warming (e.g. Chang et al., 2008). Lopes dos Santos et al. (2010) examined a site in the tropical NE Atlantic where they showed that in the modern Uk'37 reflects SST while TEXH86 likely reflects a thermocline temperature. The authors noted several periods during the past 200 kyr when surface cooling and subsurface warming occurred, which they attributed to AMOC slowdown. In this study, we examine sediments from ODP site 660 (NE Atlantic), located near the site studied by Lopes dos Santos et al. (2010), and use paired Uk'37-TEXH86 temperature measurements to investigate changes in sea surface and thermocline temperature variability over the past 4 Ma. We find that following Pliocene warmth, the Uk'37 record indicates an overall cooling trend since ~2.2 Ma, superimposed on glacial-interglacial temperature fluctuations. In contrast, the TEX86 record, which yields consistently cooler temperatures in comparison to Uk'37, does not exhibit an overall cooling trend during the Pleistocene nor elevated warmth during the Pliocene. In portions of the record, anticorrelated variability between Uk'37 and TEX86 temperatures is observed, likely reflecting differences in SST and thermocline temperatures related to AMOC variability. In addition, we examine the carbon (δ13C) and deuterium (δD) isotopic composition of plant leaf waxes, proxies for vegetation type (C3 vs. C4) and precipitation amount, respectively, as several studies have demonstrated close ties between AMOC variability and hydrological conditions in N Africa during the late Pleistocene and Holocene.

Effects of Feeding Strategy, Sediment Characteristics, and Chemical Properties on Polychlorinated Biphenyl and Polybrominated Diphenyl Ether Bioaccumulation from Marine Sediments in Two Invertebrates.

PubMed

Frouin, H; Jackman, P; Dangerfield, N D; Ross, P S

2017-08-01

Shellfish and sediment invertebrates have been widely used to assess pollution trends over space and time in coastal environments around the world. However, few studies have compared the bioaccumulation potential of different test species over a range of sediment-contaminant concentrations and profiles. The bioavailability of sediment-related contaminants was evaluated using sediments collected from sites (n = 12) throughout the Salish Sea, British Columbia, Canada. Two benthic marine invertebrates-the Baltic clam Macoma balthica and the polychaete worm Neanthes arenaceodentata-were exposed for 28 days in a controlled environment to these field-collected coastal sediments. The congener-specific uptake of legacy polychlorinated biphenyls (PCBs) and emergent polybrominated diphenyl ethers (PBDEs) was determined using high-resolution gas chromatography/mass spectrometry in sediments and in invertebrates after the experimental exposure. The polychaete Neanthes accumulated lower concentrations of PCBs but higher concentrations of PBDEs. The present study indicates that differences in bioaccumulation between these two invertebrates shape the accumulation of PCB and PBDE congeners, reflect differences in feeding strategies, and reveal the physicochemical properties of the contaminants and sediment properties. Because biota-sediment accumulation factor values are often calculated for environmental monitoring or site-specific impact assessments, our results provide insight into potentially confounding factors and the need for caution when selecting indicator species for coastal marine pollution.

The role of subsurface flow in hillslope and streambank erosion: A review of status and research needs

USDA-ARS?s Scientific Manuscript database

Sediment is the most common cause of stream impairment. Great progress has been made in understanding processes of soil erosion due to surface runoff and incorporating these in prediction technologies. However, in many landscapes the dominant source of sediment is derived from mass wasting of hillsl...

Effect of alternative surface inlet designs on sediment and phosphorus drainage losses

USDA-ARS?s Scientific Manuscript database

Open surface inlets that connect to subsurface tile drainage systems provide a direct pathway for sediment, nutrients, and agrochemicals to surface waters. This study was conducted to determine whether modifying open inlets by burying them in gravel capped with 30 cm of sandy clay loam soil or in ve...

Biodegradation of polycyclic aromatic hydrocarbons by Sphingomonas strains isolated from the terrestrial subsurface

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shi, T; Fredrickson, Jim K.; Balkwill, David L.

Several strains of Sphingomonas isolated from deep Atlantic coastal plain aquifers at the US Department of Energy Savannah River Site (SRS) near Aiken, SC were shown to degrade a variety of aromatic hydrocarbons in a liquid culture medium. Sphingomonas aromaticivorans strain B0695 was the most versatile of the five strains examined. This strain was able to degrade acenaphthene, anthracene, phenanthrene, 2,3-benzofluorene, 2-methyl naphthalene, 2,3-dimethylnaphthalene, and fluoranthene in the presence of 400 mg l(-1) Tween 80. Studies involving microcosms composed of aquifer sediments showed that S. aromaticivorans B0695 could degrade phenanthrene effectively in sterile sediment and could enhance the rate atmore » which this compound was degraded in nonsterile sediment. These findings indicate that it may be feasible to carry out (or, at least, to enhance) in situ bioremediation of phenanthrene-contaminated soils and subsurface environments with S. aromaticivorans B0695. In contrast, stra in B0695 was unable to degrade fluoranthene in microcosms containing aquifer sediments, even though it readily degraded this polynuclear aromatic hydrocarbon (PAH) in a defined liquid growth medium.« less

Structure of Subsurface Sediments in the Scan Basin (Scotia Sea)

NASA Astrophysics Data System (ADS)

Schreider, Al. A.; Schreider, A. A.; Sazhneva, A. E.; Galindo-Zaldivar, J.; Ruano, P.; Maldonado, A.; Martos-Martin, Y.; Lobo, F.

2018-01-01

The structure of sediments in the Scotia Sea is used as a basis for reconstructing the geological history of its bottom in the Late Quaternary. The Scan Basin is one of the main elements of the topography of the southern Scotia Sea. Its formation played a considerable role in the fragmentation of the continent, which included the Bruce and Discovery banks. The main parameters of the sediment layer in the Scan Basin have been reconstructed by the present time, but its top part has not been studied. In this work, we analyze the first data obtained on the R/V Gesperidas with the use of a TOPAS PS 18/40 high-resolution seismic profilograph in 2012. Three layers in the subsurface sediments on the bottom of the Scan Basin were specified for the first time. The mean periods of their deposition in the Late Quaternary were determined as 115000 years for the first, 76000 years for the second, and 59 000 years for the third layer from the surface of the bottom. The duration of the total accumulation period of the three layers is about 250000 years.

ACOUSTIC TECHNIQUES FOR THE MAPPING OF THE DISTRIBUTION OF CONTAMINATED SEDIMENTS

EPA Science Inventory

An overview of the last 30 years of analytical research into the acoustic properties of harbor marine sediments has allowed the extension of the original work of Hamilton (1970) into a production system for classifying the density and bulk physical properties of standard marine s...

PHOTOINDUCED TOXICITY OF PAHS AND ALKYLATED PAHS TO A MARINE INFAUNAL AMPHIPOD (RHEPOXYNIUS ABRONIUS)

EPA Science Inventory

The marine infaunal amphipod Rhepoxynius abronius was exposed in standard 10-day toxicity tests to sediments contaminated with parent or alkylated PAHs. After exposures, mortalities (LC50 values) and the ability to rebury in control sediment (EC50 values) were determined. Survivo...

IMPORTANCE OF BLACK CARBON IN DISTRIBUTION AND BIOACCUMULATION MODELS OF POLYCYCLIC AROMATIC HYDROCARBONS IN CONTAMINATED MARINE SEDIMENTS

EPA Science Inventory

The roles and relative importance of nonpyrogenic organic carbon (NPOC) and black carbon (BC) as binding phases of polycyclic aromatic hydrocarbons (PAHs) were assessed by their ability to estimate pore water concentrations and biological uptake in various marine sediments. Sedim...

Mazama ash in the Northeastern Pacific

USGS Publications Warehouse

Nelson, C.H.; Kulm, L.D.; Carlson, P.R.; Duncan, J.R.

1968-01-01

Volcanic glass in marine sediments off Oregon and Washington correlates with continental deposits of Mount Mazama ash by stratigraphic position, refractive index, and radiocarbon dating. Ash deposited in the abyssal regions by turbidity currents is used for tracing of the dispersal routes of postglacial sediments and for evaluation of marine sedimentary processes.

Sediment carbon fate in phreatic karst (Part 1): Conceptual model development

NASA Astrophysics Data System (ADS)

Husic, A.; Fox, J.; Agouridis, C.; Currens, J.; Ford, W.; Taylor, C.

2017-06-01

Recent research has paid increased attention to quantifying the fate of carbon pools within fluvial networks, but few, if any, studies consider the fate of sediment organic carbon in fluviokarst systems despite that karst landscapes cover 12% of the earth's land surface. The authors develop a conceptual model of sediment carbon fate in karst terrain with specific emphasis upon phreatic karst conduits, i.e., those located below the groundwater table that have the potential to trap surface-derived sediment and turnover carbon. To assist with their conceptual model development, the authors study a phreatic system and apply a mixture of methods traditional and novel to karst studies, including electrical resistivity imaging, well drilling, instantaneous velocimetry, dye tracing, stage recording, discrete and continuous sediment and water quality sampling, and elemental and stable carbon isotope fingerprinting. Results show that the sediment transport carrying capacity of the phreatic karst water is orders of magnitude less than surface streams during storm-activated periods promoting deposition of fine sediments in the phreatic karst. However, the sediment transport carrying capacity is sustained long after the hydrologic event has ended leading to sediment resuspension and prolonged transport. The surficial fine grained laminae occurs in the subsurface karst system; but unlike surface streams, the light-limited conditions of the subsurface karst promotes constant heterotrophy leading to carbon turnover. The coupling of the hydrological processes leads to a conceptual model that frames phreatic karst as a biologically active conveyor of sediment carbon that recharges degraded organic carbon back to surface streams. For example, fluvial sediment is estimated to lose 30% of its organic carbon by mass during a one year temporary residence within the phreatic karst. It is recommended that scientists consider karst pathways when attempting to estimate organic matter stocks and carbon transformation in fluvial networks.

Effect of subsurface drainage on runoff and sediment yield from an agricultural watershed in western Oregon, U.S.A.

NASA Astrophysics Data System (ADS)

Istok, J. D.; Kling, G. F.

1983-09-01

Rainfall, watershed runoff and suspended-sediment concentrations for three small watersheds (0.46, 1.4 and 6.0 ha in size) were measured continuously for four winter rainfall seasons. The watersheds were fall-planted to winter wheat and were located on the hilly western margins of the Willamette Valley, Oregon. Following two rainfall seasons of data collection, a subsurface drainage system (consisting of a patterned arrangement of 10-cm plastic tubing at a depth of 1.0 m and a spacing of 12 m) was installed on the 1.4-ha watershed (watershed 2). Perched water tables were lowered and seepage was reduced on watershed 2 following the installation of the drainage system. The reductions were quantified with a water-table index (cumulative integrated excess). Watershed runoff and sediment yield from watershed 2 were decreased by ˜65 and ˜55%, respectively. These reductions were estimated from double mass curves and by statistical regression on a set of hydrograph variables. Maximum flow and average flow rates were decreased and the time from the beginning of a storm to the peak flow (lag time) increased. It is concluded that subsurface drainage can be an effective management practice for erosion control in western Oregon.

Effects of nitrate on the stability of uranium in a bioreduced region of the subsurface.

PubMed

Wu, Wei-Min; Carley, Jack; Green, Stefan J; Luo, Jian; Kelly, Shelly D; Van Nostrand, Joy; Lowe, Kenneth; Mehlhorn, Tonia; Carroll, Sue; Boonchayanant, Benjaporn; Löfller, Frank E; Watson, David; Kemner, Kenneth M; Zhou, Jizhong; Kitanidis, Peter K; Kostka, Joel E; Jardine, Philip M; Criddle, Craig S

2010-07-01

The effects of nitrate on the stability of reduced, immobilized uranium were evaluated in field experiments at a U.S. Department of Energy site in Oak Ridge, TN. Nitrate (2.0 mM) was injected into a reduced region of the subsurface containing high levels of previously immobilized U(IV). The nitrate was reduced to nitrite, ammonium, and nitrogen gas; sulfide levels decreased; and Fe(II) levels increased then deceased. Uranium remobilization occurred concomitant with nitrite formation, suggesting nitrate-dependent, iron-accelerated oxidation of U(IV). Bromide tracer results indicated changes in subsurface flowpaths likely due to gas formation and/or precipitate. Desorption-adsorption of uranium by the iron-rich sediment impacted uranium mobilization and sequestration. After rereduction of the subsurface through ethanol additions, background groundwater containing high levels of nitrate was allowed to enter the reduced test zone. Aqueous uranium concentrations increased then decreased. Clone library analyses of sediment samples revealed the presence of denitrifying bacteria that can oxidize elemental sulfur, H(2)S, Fe(II), and U(IV) (e.g., Thiobacillus spp.), and a decrease in relative abundance of bacteria that can reduce Fe(III) and sulfate. XANES analyses of sediment samples confirmed changes in uranium oxidation state. Addition of ethanol restored reduced conditions and triggered a short-term increase in Fe(II) and aqueous uranium, likely due to reductive dissolution of Fe(III) oxides and release of sorbed U(VI). After two months of intermittent ethanol addition, sulfide levels increased, and aqueous uranium concentrations gradually decreased to <0.1 microM.

Impact of mercury on denitrification and denitrifying microbial communities in nitrate enrichments of subsurface sediments.

PubMed

Wang, Yanping; Wiatrowski, Heather A; John, Ria; Lin, Chu-Ching; Young, Lily Y; Kerkhof, Lee J; Yee, Nathan; Barkay, Tamar

2013-02-01

The contamination of groundwater with mercury (Hg) is an increasing problem worldwide. Yet, little is known about the interactions of Hg with microorganisms and their processes in subsurface environments. We tested the impact of Hg on denitrification in nitrate reducing enrichment cultures derived from subsurface sediments from the Oak Ridge Integrated Field Research Challenge site, where nitrate is a major contaminant and where bioremediation efforts are in progress. We observed an inverse relationship between Hg concentrations and onset and rates of denitrification in nitrate enrichment cultures containing between 53 and 1.1 μM of inorganic Hg; higher Hg concentrations increasingly extended the time to onset of denitrification and inhibited denitrification rates. Microbial community complexity, as indicated by terminal restriction fragment length polymorphism (tRFLP) analysis of the 16S rRNA genes, declined with increasing Hg concentrations; at the 312 nM Hg treatment, a single tRFLP peak was detected representing a culture of Bradyrhizobium sp. that possessed the merA gene indicating a potential for Hg reduction. A culture identified as Bradyrhizobium sp. strain FRC01 with an identical 16S rRNA sequence to that of the enriched peak in the tRFLP patterns, reduced Hg(II) to Hg(0) and carried merA whose amino acid sequence has 97 % identity to merA from the Proteobacteria and Firmicutes. This study demonstrates that in subsurface sediment incubations, Hg may inhibit denitrification and that inhibition may be alleviated when Hg resistant denitrifying Bradyrhizobium spp. detoxify Hg by its reduction to the volatile elemental form.

Microbial Diversity in Sulfate-Reducing Marine Sediment Enrichment Cultures Associated with Anaerobic Biotransformation of Coastal Stockpiled Phosphogypsum (Sfax, Tunisia)

PubMed Central

Zouch, Hana; Karray, Fatma; Armougom, Fabrice; Chifflet, Sandrine; Hirschler-Réa, Agnès; Kharrat, Hanen; Kamoun, Lotfi; Ben Hania, Wajdi; Ollivier, Bernard; Sayadi, Sami; Quéméneur, Marianne

2017-01-01

Anaerobic biotechnology using sulfate-reducing bacteria (SRB) is a promising alternative for reducing long-term stockpiling of phosphogypsum (PG), an acidic (pH ~3) by-product of the phosphate fertilizer industries containing high amounts of sulfate. The main objective of this study was to evaluate, for the first time, the diversity and ability of anaerobic marine microorganisms to convert sulfate from PG into sulfide, in order to look for marine SRB of biotechnological interest. A series of sulfate-reducing enrichment cultures were performed using different electron donors (i.e., acetate, formate, or lactate) and sulfate sources (i.e., sodium sulfate or PG) as electron acceptors. Significant sulfide production was observed from enrichment cultures inoculated with marine sediments, collected near the effluent discharge point of a Tunisian fertilizer industry (Sfax, Tunisia). Sulfate sources impacted sulfide production rates from marine sediments as well as the diversity of SRB species belonging to Deltaproteobacteria. When PG was used as sulfate source, Desulfovibrio species dominated microbial communities of marine sediments, while Desulfobacter species were mainly detected using sodium sulfate. Sulfide production was also affected depending on the electron donor used, with the highest production obtained using formate. In contrast, low sulfide production (acetate-containing cultures) was associated with an increase in the population of Firmicutes. These results suggested that marine Desulfovibrio species, to be further isolated, are potential candidates for bioremediation of PG by immobilizing metals and metalloids thanks to sulfide production by these SRB. PMID:28871244

Carotenoid diagenesis in recent marine sediments. I. The Peru continental shelf (15/sup 0/S, 75/sup 0/W)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Repeta, D.J.; Gagosian, R.B.

1987-04-01

The authors report here the distribution of carotenoids in Peru marine surface sediments, including partial identification of 37 pigments, 33 of which have not been previously reported to occur in marine sediments. Their analysis demonstrates that zooplanktonic crustacea, diatoms, dinoflagellates, cryptomonads, purple nonsulfur photosynthetic bacteria, and unidentified species of photosynthetic bacteria are contributors to sedimentary organic matter. Fucoxanthin, fucoxanthinol, diadinoxanthin, peridinin and peridininol, the principal carotenoids of diatoms and dinoflagellates observed in sediment traps, are nearly absent from their sample, even though these phytoplankton are the primary source of organic matter. They attribute this to the presence of 5,6 epoxidesmore » in these pigments, a feature which causes rapid cleavage of the polyene and fragmentation to low molecular weight compounds.« less

Up-flow anaerobic sediment trapped (UAST) reactor as a new configuration for the enrichment of anammox bacteria from marine sediments.

PubMed

Rios-Del Toro, E Emilia; López-Lozano, Nguyen E; Cervantes, Francisco J

2017-08-01

A novel reactor configuration for the enrichment of anammox bacteria from marine sediments was developed. Marine sediments were successfully kept inside the bioreactors during the enrichment process by strategically installing traps at different depths to prevent the wash-out of sediments. Three up-flow anaerobic sediment trapped (UAST) reactors were set up (α, β and ω supplied with 50, 150 and 300mgCa 2+ /L, respectively). Nitrogen removal rates (NRR) of up to 3.5gN/L-d and removal efficiencies of >95% were reached. Calcium enhanced biomass production as evidenced by increased volatile suspended solids and extracellular polymeric substances. After the long-term operation, dominant families detected were Rhodobacteracea, Flavobacteracea, and Alteromonadacea, while the main anammox genera detected in the three reactors were Candidatus Kuenenia and Candidatus Anammoximicrobium. The UAST reactor is proposed as suitable technology for the enrichment of anammox bacteria applicable for the treatment of saline industrial wastewaters with high nitrogen content. Copyright © 2017 Elsevier Ltd. All rights reserved.

Archaeal populations in hypersaline sediments underlying orange microbial mats in the Napoli mud volcano.

PubMed

Lazar, Cassandre Sara; L'haridon, Stéphane; Pignet, Patricia; Toffin, Laurent

2011-05-01

Microbial mats in marine cold seeps are known to be associated with ascending sulfide- and methane-rich fluids. Hence, they could be visible indicators of anaerobic oxidation of methane (AOM) and methane cycling processes in underlying sediments. The Napoli mud volcano is situated in the Olimpi Area that lies on saline deposits; from there, brine fluids migrate upward to the seafloor. Sediments associated with a brine pool and microbial orange mats of the Napoli mud volcano were recovered during the Medeco cruise. Based on analysis of RNA-derived sequences, the "active" archaeal community was composed of many uncultured lineages, such as rice cluster V or marine benthic group D. Function methyl coenzyme M reductase (mcrA) genes were affiliated with the anaerobic methanotrophic Archaea (ANME) of the ANME-1, ANME-2a, and ANME-2c groups, suggesting that AOM occurred in these sediment layers. Enrichment cultures showed the presence of viable marine methylotrophic Methanococcoides in shallow sediment layers. Thus, the archaeal community diversity seems to show that active methane cycling took place in the hypersaline microbial mat-associated sediments of the Napoli mud volcano.

Constraints on the sources of branched GDGTs in open ocean sediments: dust transport or in situ production?

NASA Astrophysics Data System (ADS)

Weijers, J.; Schefuss, E.; Kim, J.; Sinninghe Damsté, J. S.; Schouten, S.

2012-12-01

Branched glycerol dialkyl glycerol tetraethers (brGDGTs) are membrane lipids synthesized by soil bacteria that, upon soil erosion, are transported by rivers to the ocean where they accumulate in the near shore sedimentary archive. The degrees of cyclisation (CBT) and methylation (MBT) of these compounds have been shown to relate to soil pH and annual mean air temperature [1]. Therefore, brGDGTs in near shore sedimentary archives can be used to estimate past continental air temperatures and enable a direct comparison of these to marine sea surface temperature estimates obtained from the same samples. In addition, brGDGT abundance relative to crenarchaeol, an isoprenoid GDGT synthesized by marine pelagic Thaumarchaeota, quantified in the branched vs. isoprenoid tetraether (BIT) index, is an indicator of the relative input of soil organic matter in near shore sediments [2]. High BIT values near river outflows testify of relative strong soil organic matter input and generally the BIT index will decrease off shore to values near 0, the marine end-member value. Even in remote open ocean sediments, however, the BIT index will rarely reach 0 as small amounts of brGDGTs are often present. The occurrence of these brGDGTs in open marine settings might be a result of i) dust input, ii) sediment dispersion from near coastal areas, or iii) in situ production in marine sediments. In order to constrain the origin of branched GDGTs in open marine sediments we analyzed i) atmospheric dust samples taken along an equatorial African coastal transect, ii) marine surface waters near and away of the Congo river outflow, iii) a series of surface sediments at and around the Congo deep sea fan, and iv) a series of open marine surface sediments from different oceans with BIT values < 0.08. Our results show that brGDGTs are present, though in relative low amounts, in dust. Their distribution resembles that of soil input as also found in the Congo deep sea fan, with MBT and CBT values that could be representative of tropical African soils. Strikingly, BIT indices are much lower than expected for soils (0.15-0.42), likely as a result of sea spray on the dust filters. Open ocean sediments, on the contrary, are typically characterized by relative high amounts of cyclopentane containing brGDGTs resulting in low CBT values ranging from -0.4 - 0.8. These values are similarly low as reported earlier in marine sediments near Svalbard [3] and in the East China Sea [4], for which in situ production was invoked. Thus, brGDGT transport by dust does seem possible, though quantities are low. Since open ocean brGDGT distributions are markedly different from those in soils and dust, the latter is most likely not a significant source. Our results indicate that production of brGDGTs in ocean sediments, though in relative low amounts, is much more widespread than previously thought. This emphasizes that the MBT-CBT proxy for continental air temperature should only be used at locations where soil organic matter input is significant as evidenced by high BIT indices. References: [1] Weijers J.W.H. et al. (2007) Geochmim. Cosmochim. Acta 71, 703-713. [2] Hopmans E.C. et al. (2004) Earth Planet. Sci. Lett. 224, 107-116. [3] Peterse F. et al. (2009) Org. Geochem. 40, 692-699. [4] Zhu C. Et al. (2011) Org. Geochem. 42, 376-386.

Sources and sinks of filtered total mercury and concentrations of total mercury of solids and of filtered methylmercury, Sinclair Inlet, Kitsap County, Washington, 2007-10

USGS Publications Warehouse

Paulson, Anthony J.; Dinicola, Richard S.; Noble, Marlene A.; Wagner, Richard J.; Huffman, Raegan L.; Moran, Patrick W.; DeWild, John F.

2012-01-01

The majority of filtered total mercury in the marine water of Sinclair Inlet originates from salt water flowing from Puget Sound. About 420 grams of filtered total mercury are added to Sinclair Inlet each year from atmospheric, terrestrial, and sedimentary sources, which has increased filtered total mercury concentrations in Sinclair Inlet (0.33 nanograms per liter) to concentrations greater than those of the Puget Sound (0.2 nanograms per liter). The category with the largest loading of filtered total mercury to Sinclair Inlet included diffusion of porewaters from marine sediment to the water column of Sinclair Inlet and discharge through the largest stormwater drain on the Bremerton naval complex, Bremerton, Washington. However, few data are available to estimate porewater and stormwater releases with any certainty. The release from the stormwater drain does not originate from overland flow of stormwater. Rather total mercury on soils is extracted by the chloride ions in seawater as the stormwater is drained and adjacent soils are flushed with seawater by tidal pumping. Filtered total mercury released by an unknown freshwater mechanism also was observed in the stormwater flowing through this drain. Direct atmospheric deposition on the Sinclair Inlet, freshwater discharge from creek and stormwater basins draining into Sinclair Inlet, and saline discharges from the dry dock sumps of the naval complex are included in the next largest loading category of sources of filtered total mercury. Individual discharges from a municipal wastewater treatment plant and from the industrial steam plant of the naval complex constituted the loading category with the third largest loadings. Stormwater discharge from the shipyard portion of the naval complex and groundwater discharge from the base are included in the loading category with the smallest loading of filtered total mercury. Presently, the origins of the solids depositing to the sediment of Sinclair Inlet are uncertain, and consequently, concentrations of sediments can be qualitatively compared only to total mercury concentrations of solids suspended in the water column. Concentrations of total mercury of suspended solids from creeks, stormwater, and even wastewater effluent discharging into greater Sinclair Inlet were comparable to concentrations of solids suspended in the water column of Sinclair Inlet. Concentrations of total mercury of suspended solids were significantly lower than those of marine bed sediment of Sinclair Inlet; these suspended solids have been shown to settle in Sinclair Inlet. The settling of suspended solids in the greater Sinclair Inlet and in Operable Unit B Marine of the naval complex likely will result in lower concentrations of total mercury in sediments. Such a decrease in total mercury concentrations was observed in the sediment of Operable Unit B Marine in 2010. However, total mercury concentrations of solids discharged from several sources from the Bremerton naval complex were higher than concentrations in sediment collected from Operable Unit B Marine. The combined loading of solids from these sources is small compared to the amount of solids depositing in OU B Marine. However, total mercury concentration in sediment collected at a monitoring station just offshore one of these sources, the largest stormwater drain on the Bremerton naval complex, increased considerably in 2010. Low methylmercury concentrations were detected in groundwater, stormwater, and effluents discharged from the Bremerton naval complex. The highest methylmercury concentrations were measured in the porewaters of highly reducing marine sediment in greater Sinclair Inlet. The marine sediment collected off the largest stormwater drain contained low concentrations of methylmercury in porewater because these sediments were not highly reducing.

Petroleum hydrocarbon concentrations in marine sediments along Chennai Coast, Bay of Bengal, India.

PubMed

Venkatachalapathy, R; Veerasingam, S; Ramkumar, T

2010-10-01

The spatial and temporal distribution of petroleum hydrocarbons (PHC) in marine sediments along the Chennai coast, Bay of Bengal was quantified by Ultra-Violet Fluorescence (UVF) Spectroscopy. The concentration of PHC in surface sediments varied from 1.88 to 39.76 ppm. The highest values obtained in the northern part of the study area, where shipping activities and land-based waste waters disposed into sea through the rivers like Kuvam and Adayar. The Adayar (7.26-16.83 ppm) and Kuvam (5.5-39.72 ppm) cores reveal a clear horizon of increase in PHC above 50 and 35 cm respectively. PHC values showed a decreasing pattern with depth in all sediment cores suggesting the excess anthropogenic loading occurring in the recent past. The present study revealed that the PHC values of Chennai coastal sediments are lower than the values reported from selected costal areas including the sediment of the Mumbai coast (7.6-42.8 ppm), Arabian Sea. The results will be useful for pollution monitoring program along the coastal region and also to check the level of petroleum hydrocarbons in marine sediments.

Origin and transport of (238)U and (226)Ra in riverine, estuarine and marine sediments of the Krka River, Croatia.

PubMed

Cukrov, Neven; Mlakar, Marina; Cuculić, Vlado; Barisić, Delko

2009-06-01

Spatial distribution of (238)U and (226)Ra activities in sediment columns along the Krka River and estuary, were studied using gamma spectrometry. Markedly different (238)U and (226)Ra activities between riverine, estuarine and marine sediments were observed. Distribution of these radionuclides, as well as their anthropogenic and natural origin, was evaluated by activity measurements, taking into account sedimentation rates estimated by (137)Cs distribution in sediment columns. Naturally present (238)U and (226)Ra activities were highest in riverine and lowest in marine sediments. (238)U and (226)Ra activities in historic riverine sediments revealed anthropogenic influence from town of Knin, which diminished for 15-20% in 1990s due to warfare that caused stop of industrial, agricultural and transport activities. Drainage of the flysch material naturally elevates (238)U and (226)Ra activities in the vicinity of its inflow in the upper part of estuary. (238)U and (226)Ra from the phosphate ore discharge in the port of Sibenik did not spread further in estuary, which was also confirmed by (238)U and (226)Ra activities detected in Mytilus sp. mussels' tissue.

Study of photocatalytic degradation of tributyltin, dibutylin and monobutyltin in water and marine sediments.

PubMed

Brosillon, Stephan; Bancon-Montigny, Chrystelle; Mendret, Julie

2014-08-01

This study reports on the first assessment of the treatment of sediments contaminated by organotin compounds using heterogeneous photocatalysis. Photocatalysis of organotins in water was carried out under realistic concentration conditions (μgL(-1)). Degradation compounds were analyzed by GC-ICP-MS; a quasi-complete degradation of tributyltin (TBT) in water (99.8%) was achieved after 30min of photocatalytic treatment. The degradation by photolysis was about (10%) in the same conditions. For the first time decontamination of highly polluted marine sediments (certified reference material and harbor sediments) by photocatalysis proves that the use of UV and the production of hydroxyl radicals are an efficient way to treat organotins adsorbed onto marine sediment despite the complexity of the matrix. In sediment, TBT degradation yield ranged from 32% to 37% after only 2h of irradiation (TiO2-UV) and the by-products: dibutyltin (DBT) and monobutyltin (MBT) were degraded very rapidly in comparison with TBT. It was shown that during photocatalysis of organotins in sediments, the hydroxyl radical attack and photolysis are the two ways for the degradation of adsorbed TBT. Copyright © 2014 Elsevier Ltd. All rights reserved.

­­Clastic Pipes on Mars: Evidence for a Near Surface Groundwater System

NASA Astrophysics Data System (ADS)

Wheatley, D. F.; Chan, M. A.; Okubo, C. H.

2017-12-01

Clastic pipes, a type of vertical, columnar injectite, occur throughout the terrestrial stratigraphic record and are identified across many Martian terrains. Terrestrial pipe analogs can aid in identifying clastic pipes on Mars to understand their formation processes and their implications for a past near-surface groundwater system. On Earth, clastic pipes form through fluidization of overpressurized sediment. Fluidization occurs when the upward frictional (i.e., drag) forces of escaping fluids overpower the downward acting gravitational force. To create the forces necessary for pipe formation requires overpressurization of a body of water-saturated porous media overlain by a low permeability confining layer. As the pressure builds, the confining layer eventually fractures and the escaping fluids fluidize the porous sediment causing the sediment to behave like a fluid. These specific formation conditions record evidence of a violent release of fluid-suspended sediment including brecciation of the host and sealing material, internal outward grading/sorting that results in a coarser-grained commonly better cemented outer rind, traction structures, and a cylindrical geometry. Pipes form self-organized, dispersed spatial relationships due to the efficient diffusion of overpressured zones in the subsurface and the expulsion of sediment under pressure. Martian pipes occur across the northern lowlands, dichotomy boundary, and southern highlands in various forms of erosional relief ranging from newer eruption structures to eroded cylindrical/conical mounds with raised rims to highly eroded mounds/hills. Similar to terrestrial examples, Martian pipes form in evenly-spaced, self-organized arrangements. The pipes are typically internally massive with a raised outer rim (interpreted as a sorted, coarser-grained, better-cemented rim). This evidence indicates that Martian pipes formed through fluidization, which requires a near-surface groundwater system. Pipes create a window into the subsurface by excavating subsurface sediment and waters. After emplacement, pipes can also act as fluid conduits, channeling post-depositional fluid flow. The preferential porosity and flow paths may make the pipes an ideal exploration target for microbial life.

Middle Eocene Nummulites and their offshore re-deposition: A case study from the Middle Eocene of the Venetian area, northeastern Italy

NASA Astrophysics Data System (ADS)

Bassi, Davide; Nebelsick, James H.; Puga-Bernabéu, Ángel; Luciani, Valeria

2013-11-01

The Middle Eocene Calcari nummulitici formation from northeastern Italy, Venetian area, represents a shallow-marine carbonate ramp developed on the northern Tethyan margin. In the Monti Berici area, its main components are larger foraminifera and coralline red algal communities that constitute thick carbonate sedimentary successions. Middle ramp and proximal outer ramp environments are recognized using component relationships, biofacies and sedimentary features. The middle-ramp is characterized by larger flattened-lenticular Nummulites on palaeohighs between which rhodoliths formed. Larger Nummulites palaeohighs containing Nummulites millecaput, Nummulites crassus, Nummulites discorbinus and Nummulites cf. gizehensis developed more basin-wards. The following relatively quiet environments of basin-wards of the palaeohighs represent areas of maximum carbonate production. The transition between the distal middle- and the proximal outer-ramp settings is marked in the study area by a large erosional surface which is interpreted to have been formed as a result of an erosive channel body filled in by deposits re-sedimented from shallower depths. These off-shore re-sedimented channelized deposits, ascribed to the Shallow Benthic Zone SBZ 15, lying on hemipelagic marls (planktonic foraminiferal zone E9 (P11)) allow for a biostratigraphic correlation to the Late Lutetian. The studied deposits, represented by packstone to rudstones, were displaced whilst still unlithified. The Lutetian-Bartonian regression along with the local tectonic activity promoted the production of a high amount of biogenic shallow-water carbonates mainly produced in the Mossano middle-ramp settings. These prograded towards the basinal areas with high-sedimentation rate of carbonate deposits characterized by the larger Nummulites rudstones. Such high amounts of sediment led to sediment instability which potentially could be mobilized either by return currents due to occasional major storms or by earthquakes induced by tectonic activity. These will have led to the offshore re-deposition of the Nummulites sediments into deeper water setting via the observed channels. Since potential migration pathways are short, such distal re-sedimented channel-filled material surrounded by hemipelagic marls is optimally placed for the formation of potential subsurface oil reservoirs.

Radiocarbon ages of different fractions of peat on coastal lowland of Bohai Bay: marine influence?

NASA Astrophysics Data System (ADS)

Shang, Zhiwen; Wang, Fu; Fang, Jing; Li, Jianfen; Chen, Yongsheng; Jiang, Xingyu; Tian, Lizhu; Wang, Hong

2018-05-01

Peat in boreholes is the most important 14C dating material used for constructing age framework. 20 bulk peat samples were collected from five boreholes, the 14C ages of two fractions (organic sediment fraction and peat fraction) of the bulk peat samples were investigated by AMS-dating and which fraction is better to help construct an age framework for the boreholes were compared and discussed. The results indicated that the peat fraction give a good dating results sequence in the boreholes, compared with the corresponding organic sediment fraction. And the dating results of organic sediment fraction show 161-6 702 years older than corresponding peat fraction, which was caused by marine influence. Then, we suggest an experience formula as y=0.99x-466.5 by the correlation analysis for correcting the marine influenced organic sediment ages within the conventional ages between 4 000 to 9 000 yrs BP, and more study should be carried out for the AMS 14C dating of the bulk organic sediments.

Polychlorinated naphthalenes (PCNs) in riverine and marine sediments of the Laizhou Bay area, North China.

PubMed

Pan, Xiaohui; Tang, Jianhui; Chen, Yingjun; Li, Jun; Zhang, Gan

2011-12-01

PCN congeners were analyzed in marine and riverine sediments of the Laizhou Bay area, North China. Concentrations of PCNs ranged from 0.12 to 5.1 ng g(-)(1) dry weight (dw) with a mean value of 1.1 ng g(-)(1) dw. The levels of PCNs varied largely, with industrial group approximately ten folds higher than those of the rural in riverine sediment. A strong impact by direct discharge from local factories was suggested. Similar compositional profiles were found within groups. High resemblance of compositional profiles between industrial samples and Halowax 1014 was observed. It was indicated that PCNs in riverine sediments were mainly from release of industrial usage, with additional contributions from industrial thermal process at certain sites. In marine sediments, it was suggested that PCNs along the coast of Laizhou Bay were mainly controlled by riverine input. While in the central bay, PCN distributions were possibly impacted by combined multiple factors. Copyright © 2011 Elsevier Ltd. All rights reserved.

Role of environmental factors and microorganisms in determining the fate of polycyclic aromatic hydrocarbons in the marine environment

PubMed Central

Duran, Robert; Cravo-Laureau, Cristiana

2016-01-01

Polycyclic aromatic hydrocarbons (PAHs) are widespread in marine ecosystems and originate from natural sources and anthropogenic activities. PAHs enter the marine environment in two main ways, corresponding to chronic pollution or acute pollution by oil spills. The global PAH fluxes in marine environments are controlled by the microbial degradation and the biological pump, which plays a role in particle settling and in sequestration through bioaccumulation. Due to their low water solubility and hydrophobic nature, PAHs tightly adhere to sediments leading to accumulation in coastal and deep sediments. Microbial assemblages play an important role in determining the fate of PAHs in water and sediments, supporting the functioning of biogeochemical cycles and the microbial loop. This review summarises the knowledge recently acquired in terms of both chronic and acute PAH pollution. The importance of the microbial ecology in PAH-polluted marine ecosystems is highlighted as well as the importance of gaining further in-depth knowledge of the environmental services provided by microorganisms. PMID:28201512

Sedimentation and basin-fill history of the Neogene clastic succession exposed in the southeastern fold belt of the Bengal Basin, Bangladesh: a high-resolution sequence stratigraphic approach

NASA Astrophysics Data System (ADS)

Royhan Gani, M.; Mustafa Alam, M.

2003-02-01

The Tertiary basin-fill history of the Bengal Basin suffers from oversimplification. The interpretation of the sedimentary history of the basin should be consistent with the evolution of its three geo-tectonic provinces, namely, western, northeastern and eastern. Each province has its own basin generation and sediment-fill history related mainly to the Indo-Burmese and subordinately to the Indo-Tibetan plate convergence. This paper is mainly concerned with facies and facies sequence analysis of the Neogene clastic succession within the subduction-related active margin setting (oblique convergence) in the southeastern fold belt of the Bengal Basin. Detailed fieldwork was carried out in the Sitapahar anticline of the Rangamati area and the Mirinja anticline of the Lama area. The study shows that the exposed Neogene succession represents an overall basinward progradation from deep marine through shallow marine to continental-fluvial environments. Based on regionally correlatable erosion surfaces the entire succession (3000+ m thick) has been grouped into three composite sequences C, B and A, from oldest to youngest. Composite sequence C begins with deep-water base-of-slope clastics overlain by thick slope mud that passes upward into shallow marine and nearshore clastics. Composite sequence B characteristically depicts tide-dominated open-marine to coastal depositional systems with evidence of cyclic marine regression and transgression. Repetitive occurrence of incised channel, tidal inlet, tidal ridge/shoal, tidal flat and other tidal deposits is separated by shelfal mudstone. Most of the sandbodies contain a full spectrum of tide-generated structures (e.g. herringbone cross-bedding, bundle structure, mud couplet, bipolar cross-lamination with reactivation surfaces, 'tidal' bedding). Storm activities appear to have played a subordinate role in the mid and inner shelf region. Rizocorallium, Rosselia, Planolites and Zoophycos are the dominant ichnofacies within the shelfal mudstone. This paralic sedimentation of Neogene succession in the study area can serve as a good point of reference for tide-dominated regressive shelf depositional systems. The top of the composite sequence B is marked by a pronounced erosion surface indicating the final phase of marine regression followed by the gradual establishment of continental-fluvial depositional systems represented by composite sequence A. In this composite sequence, stacked channel bars of low-sinuosity braided rivers gradually pass upsequence into high-sinuosity meandering river deposits. A sequence stratigraphic approach has been adopted to interpret the basin-fill history with respect to relative sea-level changes; and to subdivide the rock record into several sequences and units (systems tracts and parasequences) based on identified bounding discontinuities, such as transgressive erosion surface (TES), regressive erosion surface (RES), marine flooding surface (MFS), and incised valley floor (IVF). This approach provides new insight for both exploration and exploitation strategy for hydrocarbon plays that may prove vital to the oil companies engaged in exploration activities in the Bengal Basin. It is strongly recommended here that the traditional lithostratigraphic classification of this part of the basin, which is based on the Assam stratigraphy, be abandoned or at least revised. A tentative allostratigraphic scheme is presented, and it is suggested that to formalize the scheme further study, both surface and subsurface, is needed.

MINIATURIZED SEDIMENT PROCEDURES FOR ASESSING TOXICITY USING MARINE AND FRESHWATER AMPHIPODS AND EMBRYO/LARVAL FISH

EPA Science Inventory

Sediment toxicity tests are needed that can be conducted with less sediment volume and fewer organisms. Bench scale remediation techniques often produce less sediment than is required to perform the standardized sediment methods and the excess sediments that are generated present...

Phospholipid-derived fatty acids and quinones as markers for bacterial biomass and community structure in marine sediments.

PubMed

Kunihiro, Tadao; Veuger, Bart; Vasquez-Cardenas, Diana; Pozzato, Lara; Le Guitton, Marie; Moriya, Kazuyoshi; Kuwae, Michinobu; Omori, Koji; Boschker, Henricus T S; van Oevelen, Dick

2014-01-01

Phospholipid-derived fatty acids (PLFA) and respiratory quinones (RQ) are microbial compounds that have been utilized as biomarkers to quantify bacterial biomass and to characterize microbial community structure in sediments, waters, and soils. While PLFAs have been widely used as quantitative bacterial biomarkers in marine sediments, applications of quinone analysis in marine sediments are very limited. In this study, we investigated the relation between both groups of bacterial biomarkers in a broad range of marine sediments from the intertidal zone to the deep sea. We found a good log-log correlation between concentrations of bacterial PLFA and RQ over several orders of magnitude. This relationship is probably due to metabolic variation in quinone concentrations in bacterial cells in different environments, whereas PLFA concentrations are relatively stable under different conditions. We also found a good agreement in the community structure classifications based on the bacterial PLFAs and RQs. These results strengthen the application of both compounds as quantitative bacterial biomarkers. Moreover, the bacterial PLFA- and RQ profiles revealed a comparable dissimilarity pattern of the sampled sediments, but with a higher level of dissimilarity for the RQs. This means that the quinone method has a higher resolution for resolving differences in bacterial community composition. Combining PLFA and quinone analysis as a complementary method is a good strategy to yield higher resolving power in bacterial community structure.

Cable Bacteria in Freshwater Sediments

PubMed Central

Kristiansen, Michael; Frederiksen, Rasmus B.; Dittmer, Anders Lindequist; Bjerg, Jesper Tataru; Trojan, Daniela; Schreiber, Lars; Damgaard, Lars Riis; Schramm, Andreas; Nielsen, Lars Peter

2015-01-01

In marine sediments cathodic oxygen reduction at the sediment surface can be coupled to anodic sulfide oxidation in deeper anoxic layers through electrical currents mediated by filamentous, multicellular bacteria of the Desulfobulbaceae family, the so-called cable bacteria. Until now, cable bacteria have only been reported from marine environments. In this study, we demonstrate that cable bacteria also occur in freshwater sediments. In a first step, homogenized sediment collected from the freshwater stream Giber Å, Denmark, was incubated in the laboratory. After 2 weeks, pH signatures and electric fields indicated electron transfer between vertically separated anodic and cathodic half-reactions. Fluorescence in situ hybridization revealed the presence of Desulfobulbaceae filaments. In addition, in situ measurements of oxygen, pH, and electric potential distributions in the waterlogged banks of Giber Å demonstrated the presence of distant electric redox coupling in naturally occurring freshwater sediment. At the same site, filamentous Desulfobulbaceae with cable bacterium morphology were found to be present. Their 16S rRNA gene sequence placed them as a distinct sister group to the known marine cable bacteria, with the genus Desulfobulbus as the closest cultured lineage. The results of the present study indicate that electric currents mediated by cable bacteria could be important for the biogeochemistry in many more environments than anticipated thus far and suggest a common evolutionary origin of the cable phenotype within Desulfobulbaceae with subsequent diversification into a freshwater and a marine lineage. PMID:26116678

Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing.

PubMed

Massana, Ramon; Gobet, Angélique; Audic, Stéphane; Bass, David; Bittner, Lucie; Boutte, Christophe; Chambouvet, Aurélie; Christen, Richard; Claverie, Jean-Michel; Decelle, Johan; Dolan, John R; Dunthorn, Micah; Edvardsen, Bente; Forn, Irene; Forster, Dominik; Guillou, Laure; Jaillon, Olivier; Kooistra, Wiebe H C F; Logares, Ramiro; Mahé, Frédéric; Not, Fabrice; Ogata, Hiroyuki; Pawlowski, Jan; Pernice, Massimo C; Probert, Ian; Romac, Sarah; Richards, Thomas; Santini, Sébastien; Shalchian-Tabrizi, Kamran; Siano, Raffaele; Simon, Nathalie; Stoeck, Thorsten; Vaulot, Daniel; Zingone, Adriana; de Vargas, Colomban

2015-10-01

Although protists are critical components of marine ecosystems, they are still poorly characterized. Here we analysed the taxonomic diversity of planktonic and benthic protist communities collected in six distant European coastal sites. Environmental deoxyribonucleic acid (DNA) and ribonucleic acid (RNA) from three size fractions (pico-, nano- and micro/mesoplankton), as well as from dissolved DNA and surface sediments were used as templates for tag pyrosequencing of the V4 region of the 18S ribosomal DNA. Beta-diversity analyses split the protist community structure into three main clusters: picoplankton-nanoplankton-dissolved DNA, micro/mesoplankton and sediments. Within each cluster, protist communities from the same site and time clustered together, while communities from the same site but different seasons were unrelated. Both DNA and RNA-based surveys provided similar relative abundances for most class-level taxonomic groups. Yet, particular groups were overrepresented in one of the two templates, such as marine alveolates (MALV)-I and MALV-II that were much more abundant in DNA surveys. Overall, the groups displaying the highest relative contribution were Dinophyceae, Diatomea, Ciliophora and Acantharia. Also, well represented were Mamiellophyceae, Cryptomonadales, marine alveolates and marine stramenopiles in the picoplankton, and Monadofilosa and basal Fungi in sediments. Our extensive and systematic sequencing of geographically separated sites provides the most comprehensive molecular description of coastal marine protist diversity to date. © 2015 Society for Applied Microbiology and John Wiley & Sons Ltd.

Optimizing sample pretreatment for compound-specific stable carbon isotopic analysis of amino sugars in marine sediment

NASA Astrophysics Data System (ADS)

Zhu, R.; Lin, Y.-S.; Lipp, J. S.; Meador, T. B.; Hinrichs, K.-U.

2014-09-01

Amino sugars are quantitatively significant constituents of soil and marine sediment, but their sources and turnover in environmental samples remain poorly understood. The stable carbon isotopic composition of amino sugars can provide information on the lifestyles of their source organisms and can be monitored during incubations with labeled substrates to estimate the turnover rates of microbial populations. However, until now, such investigation has been carried out only with soil samples, partly because of the much lower abundance of amino sugars in marine environments. We therefore optimized a procedure for compound-specific isotopic analysis of amino sugars in marine sediment, employing gas chromatography-isotope ratio mass spectrometry. The whole procedure consisted of hydrolysis, neutralization, enrichment, and derivatization of amino sugars. Except for the derivatization step, the protocol introduced negligible isotopic fractionation, and the minimum requirement of amino sugar for isotopic analysis was 20 ng, i.e., equivalent to ~8 ng of amino sugar carbon. Compound-specific stable carbon isotopic analysis of amino sugars obtained from marine sediment extracts indicated that glucosamine and galactosamine were mainly derived from organic detritus, whereas muramic acid showed isotopic imprints from indigenous bacterial activities. The δ13C analysis of amino sugars provides a valuable addition to the biomarker-based characterization of microbial metabolism in the deep marine biosphere, which so far has been lipid oriented and biased towards the detection of archaeal signals.

The Development of 3d Sub-Surface Mapping Scheme and its Application to Martian Lobate Debris Aprons

NASA Astrophysics Data System (ADS)

Baik, H.; Kim, J.

2017-07-01

The Shallow Subsurface Radar (SHARAD), a sounding radar equipped on the Mars Reconnaissance Orbiter (MRO), has produced highly valuable information about the Martian subsurface. In particular, the complicated substructures of Mars such as polar deposit, pedestal crater and the other geomorphic features involving possible subsurface ice body has been successfully investigated by SHARAD. In this study, we established a 3D subsurface mapping strategy employing the multiple SHARAD profiles. A number of interpretation components of SHARAD signals were integrated into a subsurface mapping scheme using radargram information and topographic data, then applied over a few mid latitude Lobate Debris Aprons (LDAs). From the identified subsurface layers of LDA, and the GIS data base incorporating the other interpretation outcomes, we are expecting to trace the origin of LDAs. Also, the subsurface mapping scheme developed in this study will be further applied to other interesting Martian geological features such as inter crater structures, aeolian deposits and fluvial sediments. To achieve higher precision sub-surface mapping, the clutter simulation employing the high resolution topographic data and the upgraded clustering algorithms assuming multiple sub-surface layers will be also developed.

Physiology and phylogeny of the candidate phylum "Atribacteria" (formerly OP9/JS1) inferred from single-cell genomics and metagenomics

NASA Astrophysics Data System (ADS)

Dodsworth, J. A.; Murugapiran, S.; Blainey, P. C.; Nobu, M.; Rinke, C.; Schwientek, P.; Gies, E.; Webster, G.; Kille, P.; Weightman, A.; Liu, W. T.; Hallam, S.; Tsiamis, G.; Swingley, W.; Ross, C.; Tringe, S. G.; Chain, P. S.; Scholz, M. B.; Lo, C. C.; Raymond, J.; Quake, S. R.; Woyke, T.; Hedlund, B. P.

2014-12-01

Single-cell sequencing and metagenomics have extended the genomics revolution to yet-uncultivated microorganisms and provided insights into the coding potential of this so-called "microbial dark matter", including microbes belonging candidate phyla with no cultivated representatives. As more datasets emerge, comparison of individual genomes from different lineages and habitats can provide insight into the phylogeny, conserved features, and potential metabolic diversity of candidate phyla. The candidate bacterial phylum OP9 was originally found in Obsidian Pool, Yellowstone National Park, and it has since been detected in geothermal springs, petroleum reservoirs, and engineered thermal environments worldwide. JS1, another uncultivated bacterial lineage affiliated with OP9, is often abundant in marine sediments associated with methane hydrates, hydrocarbon seeps, and on continental margins and shelves, and is found in other non-thermal marine and subsurface environments. The phylogenetic relationship between OP9, JS1, and other Bacteria has not been fully resolved, and to date no axenic cultures from these lineages have been reported. Recently, 31 single amplified genomes (SAGs) from six distinct OP9 and JS1 lineages have been obtained using flow cytometric and microfluidic techniques. These SAGs were used to inform metagenome binning techniques that identified OP9/JS1 sequences in several metagenomes, extending genomic coverage in three of the OP9 and JS1 lineages. Phylogenomic analyses of these SAG and metagenome bin datasets suggest that OP9 and JS1 constitute a single, deeply branching phylum, for which the name "Atribacteria" has recently been proposed. Overall, members of the "Atribacteria" are predicted to be heterotrophic anaerobes without the capacity for respiration, with some lineages potentially specializing in secondary fermentation of organic acids. A set of signature "Atribacteria" genes was tentatively identified, including components of a bacterial microcompartments gene cluster that may be involved in carbohydrate catabolism. The "Atribacteria" may play important roles in biomass processing in anaerobic geothermal and subsurface environments.

Origin and hydrology of a large, intact Early Cambrian paleocave system and its role in overlying fluidisation structures, Arctic Canada

NASA Astrophysics Data System (ADS)

Mathieu, Jordan; Turner, Elizabeth C.; Rainbird, Robert H.

2017-04-01

Paleokarst is most commonly expressed as subtle stratigraphic surfaces rather than large void systems penetrating deeply into the paleo-subsurface. In contrast, a regional Precambrian-Cambrian unconformity on Victoria Island (NWT, Canada), is associated with exceptional exposure of large, intact Cambrian paleocaverns (100 m diameter; tens of m high). The paleocaves are distributed along a paleo-horizontal plane, and an associated gryke network is present in the 30-60 m of Neoproterozoic dolostone between cave rooves and the base of overlying Cambrian sandstone; both are filled by Cambrian sandstone. The formation and preservation of such karst features require aggressive dissolution along a stable paleo-water-table shortly before transgression and deposition of shallow-marine sand over the dolostone. During the transgression, the karst network acted as a conduit for flowing groundwater that was discharged through overlying, unconsolidated Cambrian shallow-marine sand, producing water-escape structures (sand volcanoes and their conduits). The conduits are preserved as cylindrical remnants of the sand volcanoes' feeder pipes. Sediment fluidisation was probably caused by variations in the hydraulic-head gradient in a meteoric lens near the Cambrian coastline under a tropical climate with abundant, probably seasonally variable rainfall that caused pulses in subsurface fluid flow. Spatial distribution of the paleocaves and sand volcanoes suggests their formation on the southeast side of a recently faulted horst of Proterozoic carbonate bedrock that formed a nearshore island during early Cambrian sea-level rise. Fluidisation structures such as those reported here have generally been difficult to interpret owing to a lack of data on the fluid hydraulics of the underlying aquifer. This is the first report linking the hydraulics of a well-characterised paleokarst to development of fluid-escape structures. Such structures are widely known from sandstones overlying the sub-Cambrian unconformity around the circumference of Laurentia.

California State Waters Map Series--Offshore of Ventura, California

USGS Publications Warehouse

Johnson, Samuel Y.; Dartnell, Peter; Cochrane, Guy R.; Golden, Nadine E.; Phillips, Eleyne L.; Ritchie, Andrew C.; Kvitek, Rikk G.; Greene, H. Gary; Krigsman, Lisa M.; Endris, Charles A.; Seitz, Gordon G.; Gutierrez, Carlos I.; Sliter, Ray W.; Erdey, Mercedes D.; Wong, Florence L.; Yoklavich, Mary M.; Draut, Amy E.; Hart, Patrick E.; Johnson, Samuel Y.; Cochran, Susan A.

2013-01-01

In 2007, the California Ocean Protection Council initiated the California Seafloor Mapping Program (CSMP), designed to create a comprehensive seafloor map of high-resolution bathymetry, marine benthic habitats, and geology within the 3-nautical-mile limit of California’s State Waters. The CSMP approach is to create highly detailed seafloor maps through collection, integration, interpretation, and visualization of swath sonar data, acoustic backscatter, seafloor video, seafloor photography, high-resolution seismic-reflection profiles, and bottom-sediment sampling data. The map products display seafloor morphology and character, identify potential marine benthic habitats, and illustrate both the surficial seafloor geology and shallow (to about 100 m) subsurface geology. The Offshore of Ventura map area lies within the Santa Barbara Channel region of the Southern California Bight. This geologically complex region forms a major biogeographic transition zone, separating the cold-temperate Oregonian province north of Point Conception from the warm-temperate California province to the south. The map area is in the Ventura Basin, in the southern part of the Western Transverse Ranges geologic province, which is north of the California Continental Borderland. Significant clockwise rotation—at least 90°—since the early Miocene has been proposed for the Western Transverse Ranges, and the region is presently undergoing north-south shortening. The city of Ventura is the major cultural center in the map area. The Ventura River cuts through Ventura, draining the Santa Ynez Mountains and the coastal hills north of Ventura. Northwest of Ventura, the coastal zone is a narrow strip containing highway and railway transportation corridors and a few small residential clusters. Rincon Island, an island constructed for oil and gas production, lies offshore of Punta Gorda. Southeast of Ventura, the coastal zone consists of the mouth and broad, alluvial plains of the Santa Clara River, and the region is characterized by urban and agricultural development. Ventura Harbor sits just north of the mouth of the Santa Clara River, in an area formerly occupied by lagoons and marshes. The Offshore of Ventura map area lies in the eastern part of the Santa Barbara littoral cell, whose littoral drift is to the east-southeast. Drift rates of about 700,000 to 1,150,000 tons/yr have been reported at Ventura Harbor. At the east end of the littoral cell, eastward-moving sediment is trapped by Hueneme and Mugu Canyons and then transported into the deep-water Santa Monica Basin. The largest sediment source to this littoral cell (and the largest in all of southern California) is the Santa Clara River, which has an estimated annual sediment flux of 3.1 million tons. In addition, the Ventura River yields about 270,000 tons of sediment annually. Despite the large local sediment supply, coastal erosion problems are ongoing in the map area. Riprap, revetments, and seawalls variably protect the coast within and north of Ventura. The offshore part of the map area mainly consists of relatively flat, shallow continental shelf, which dips so gently (about 0.2° to 0.4°) that water depths at the 3-nautical-mile limit of California’s State Waters are just 20 to 40 m. This part of the Santa Barbara Channel is relatively well protected from large Pacific swells from the north and west by Point Conception and the Channel Islands; long-period swells affecting the area are mainly from the south-southwest. Fair-weather wave base is typically shallower than 20-m water depth, but winter storms are capable of resuspending fine-grained sediments in 30 m of water, and so shelf sediments in the map area probably are remobilized on an annual basis. The shelf is underlain by tens of meters of interbedded upper Quaternary shelf, estuarine, and fluvial sediments deposited as sea level fluctuated up and down in the last several hundred thousand years. Seafloor habitats in the broad Santa Barbara Channel region consist of significant amounts of soft sediment and isolated areas of rocky habitat that support kelp-forest communities nearshore and rocky-reef communities in deep water. The potential marine benthic habitat types mapped in the Offshore of Ventura map area are directly related to its Quaternary geologic history, geomorphology, and active sedimentary processes. These potential habitats lie within the Shelf (continental shelf) megahabitat, dominated by a flat seafloor and substrates formed from deposition of fluvial and marine sediment during sea-level rise. This flat, fairly homogeneous seafloor, composed primarily of unconsolidated sand and mud and local deposits of gravel, cobbles, and pebbles, provides promising habitat for groundfish, crabs, shrimp, and other marine benthic organisms. The only significant interruptions to this homogeneous habitat type are exposures of hard, irregular sedimentary bedrock and coarse-grained sediment where potential habitats for rockfish and related species exist.

Anaerobic U(IV) Bio-oxidation and the Resultant Remobilization of Uranium in Contaminated Sediments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Coates, John D.

2005-06-01

A proposed strategy for the remediation of uranium (U) contaminated sites is based on immobilizing U by reducing the oxidized soluble U, U(VI), to form a reduced insoluble end product, U(IV). Due to the use of nitric acid in the processing of nuclear fuels, nitrate is often a co-contaminant found in many of the environments contaminated with uranium. Recent studies indicate that nitrate inhibits U(VI) reduction in sediment slurries. However, the mechanism responsible for the apparent inhibition of U(VI) reduction is unknown, i.e. preferential utilization of nitrate as an electron acceptor, direct biological oxidation of U(IV) coupled to nitrate reduction,more » and/or abiotic oxidation by intermediates of nitrate reduction. Recent studies indicates that direct biological oxidation of U(IV) coupled to nitrate reduction may exist in situ, however, to date no organisms have been identified that can grow by this metabolism. In an effort to evaluate the potential for nitrate-dependent bio-oxidation of U(IV) in anaerobic sedimentary environments, we have initiated the enumeration of nitrate-dependent U(IV) oxidizing bacteria. Sediments, soils, and groundwater from uranium (U) contaminated sites, including subsurface sediments from the NABIR Field Research Center (FRC), as well as uncontaminated sites, including subsurface sediments from the NABIR FRC and Longhorn Army Ammunition Plant, Texas, lake sediments, and agricultural field soil, sites served as the inoculum source. Enumeration of the nitrate-dependent U(IV) oxidizing microbial population in sedimentary environments by most probable number technique have revealed sedimentary microbial populations ranging from 9.3 x 101 - 2.4 x 103 cells (g sediment)-1 in both contaminated and uncontaminated sites. Interestingly uncontaminated subsurface sediments (NABIR FRC Background core FB618 and Longhorn Texas Core BH2-18) both harbored the most numerous nitrate-dependent U(IV) oxidizing population 2.4 x 103 cells (g sediment)-1. The nitrate-dependent U(IV) oxidizing microbial population in groundwaters is less numerous ranging from 0 cells mL-1 (Well FW300, Uncontaminated Background NABIR FRC) to 4.3 x 102 cells mL-1 (Well TPB16, Contaminated Area 2 NABIR FRC). The presence of nitrate-dependent U(IV) oxidizing bacteria supports our hypothesis that bacteria capable of anaerobic U(IV) oxidation are ubiquitous and indigenous to sedimentary and groundwater environments.« less

High occurrence of Bathyarchaeota (MCG) in the deep-sea sediments of South China Sea quantified using newly designed PCR primers.

PubMed

Yu, Tiantian; Liang, Qianyong; Niu, Mingyang; Wang, Fengping

2017-08-01

The archaeal phylum Bathyarchaeota, which is composed of a large number of diverse lineages, is widespread and abundant in marine sediments. Environmental factors that control the distribution, abundance and evolution of this largely diversified archaeal phylum are currently unclear. In this study, a new pair of specific primers that target the major marine subgroups of bathyarchaeotal 16S rRNA genes was designed and evaluated to investigate the distribution and abundance of Bathyarchaeota in marine sediments. The abundance of Bathyarchaeota along two sediment cores from the deep-sea sediments of South China Sea (SCS, each from the Dongsha and Shenhu area) was determined. A strong correlation was found between the bathyarchaeotal abundance and the content of total organic carbon (TOC), suggesting an important role of Bathyarchaeota in organic matter remineralisation in the sediments of SCS. Furthermore, diversity analysis revealed that subgroups Bathy-2, Bathy-8 and Bathy-10 were dominant bathyarchaeotal members of the deep-sea sediments in the SCS. Bathy-8 was found predominantly within the reducing and deeper sediment layers, while Bathy-10 occurred preferentially in the oxidizing and shallower sediment layers. Our study lays a foundation for the further understanding of the ecological functions and niche differentiation of the important but not well-understood sedimentary archaeal group. © 2017 Society for Applied Microbiology and John Wiley & Sons Ltd.

Distribution of trace elements in the coastal sea sediments of Maslinica Bay, Croatia

NASA Astrophysics Data System (ADS)

Mikulic, Nenad; Orescanin, Visnja; Elez, Loris; Pavicic, Ljiljana; Pezelj, Durdica; Lovrencic, Ivanka; Lulic, Stipe

2008-02-01

Spatial distributions of trace elements in the coastal sea sediments and water of Maslinica Bay (Southern Adriatic), Croatia and possible changes in marine flora and foraminifera communities due to pollution were investigated. Macro, micro and trace elements’ distributions in five granulometric fractions were determined for each sediment sample. Bulk sediment samples were also subjected to leaching tests. Elemental concentrations in sediments, sediment extracts and seawater were measured by source excited energy dispersive X-ray fluorescence (EDXRF). Concentrations of the elements Cr, Cu, Zn, and Pb in bulk sediment samples taken in the Maslinica Bay were from 2.1 to over six times enriched when compared with the background level determined for coarse grained carbonate sediments. A low degree of trace elements leaching determined for bulk sediments pointed to strong bonding of trace elements to sediment mineral phases. The analyses of marine flora pointed to higher eutrophication, which disturbs the balance between communities and natural habitats.

Estimating production and consumption of solid reactive Fe phases in marine sediments from concentration profiles

EPA Science Inventory

1D diffusion models may be used to estimate rates of production and consumption of dissolved metabolites in marine sediments, but are applied less often to the solid phase. Here we used a numerical inverse method to estimate solid phase Fe(III) and Fe(II) consumption and product...

APPLICATION OF COMPUTER-AIDED TOMOGRAPHY TO VISUALIZE AND QUANTIFY BIOGENIC STRUCTURES IN MARINE SEDIMENTS

EPA Science Inventory

We used computer-aided tomography (CT) for 3D visualization and 2D analysis of

marine sediment cores from 3 stations (at 10, 75 and 118 m depths) with different environmental

impact. Biogenic structures such as tubes and burrows were quantified and compared among st...

Marinicella sediminis sp. nov., isolated from marine sediment

USDA-ARS?s Scientific Manuscript database

A novel heterotrophic, Gram-stain-negative, aerobic, rod-shaped, pale yellow, non-motile and non-spore-forming bacterium, designated as strain F2**T, was isolated from the marine sediment collected from Weihai coastal, Shandong Province, PR China. Optimal growth occurred at 33 °C (range 10–37 °C), w...

NOAA National Status and Trends Program Twelfth Round Intercomparison Exercise Results for Trace Metals in Marine Sediments and Biological Tissues. National Status and Trends Program for marine environmental quality: Technical memo

DOE Office of Scientific and Technical Information (OSTI.GOV)

Willie, S.

1998-11-01

The report summarizes the results of the Twelfth Round Intercomparison for Trace Metals in Marine Sediments and Biological Tissues under the directive of the NOAA National Status and Trends Program. A total of forty-four participants were included in the exercise, including NOAA, USEPA, state, Austrailian, Canadian, Mexican and Argentinean laboratories. Two samples were sent by NRC to each participant, a marine sediment collected on the east coast of Canada and a freeze-dried mussel tissue. Laboratories were also asked to analyze two certified reference materials (CRMs) MESS-2 and CRM 2976. The elements to be determined were Al, Cr, Fe, Ni, Cu,more » Zn, As, Se, Ag, Cd, Sn, Hg, and Pb for both matrices, plus Be, Si, Mn, Sb, and Tl for the sediments. An accepted mean and confidence interval was calculated for each analyte in the two unknown samples, laboratory biases were identified and an overall rating of superior, good, fair or others were assigned to each laboratory.« less

Energy Requirements of Hydrogen-utilizing Microbes: A Boundary Condition for Subsurface Life

NASA Technical Reports Server (NTRS)

Hoehler, Tori M.; Alperin, Marc J.; Albert, Daniel B.; Martens, Christopher S.

2003-01-01

Microbial ecosystems based on the energy supplied by water-rock chemistry carry particular significance in the context of geo- and astrobiology. With no direct dependence on solar energy, lithotrophic microbes could conceivably penetrate a planetary crust to a depth limited only by temperature or pressure constraints (several kilometers or more). The deep lithospheric habitat is thereby potentially much greater in volume than its surface counterpart, and in addition offers a stable refuge against inhospitable surface conditions related to climatic or atmospheric evolution (e.g., Mars) or even high-energy impacts (e.g., early in Earth's history). The possibilities for a deep microbial biosphere are, however, greatly constrained by life s need to obtain energy at a certain minimum rate (the maintenance energy requirement) and of a certain minimum magnitude (the energy quantum requirement). The mere existence of these requirements implies that a significant fraction of the chemical free energy available in the subsurface environment cannot be exploited by life. Similar limits may also apply to the usefulness of light energy at very low intensities or long wavelengths. Quantification of these minimum energy requirements in terrestrial microbial ecosystems will help to establish a criterion of energetic habitability that can significantly constrain the prospects for life in Earth's subsurface, or on other bodies in the solar system. Our early work has focused on quantifying the biological energy quantum requirement for methanogenic archaea, as representatives of a plausible subsurface metabolism, in anoxic sediments (where energy availability is among the most limiting factors in microbial population growth). In both field and laboratory experiments utilizing these sediments, methanogens retain a remarkably consistent free energy intake, in the face of fluctuating environmental conditions that affect energy availability. The energy yields apparently required by methanogens in these sediment systems for sustained metabolism are about half that previously thought necessary. Lowered energy requirements would imply that a correspondingly greater proportion of the planetary subsurface could represent viable habitat for microorganisms.

Effects of Surface and Subsurface Bed Material Composition on Gravel Transport and Flow Competence Relations—Possibilities for Prediction

NASA Astrophysics Data System (ADS)

Bunte, K.; Abt, S. R.; Swingle, K. W.; Cenderelli, D. A.; Gaeuman, D. A.

2014-12-01

Bedload transport and flow competence relations are difficult to predict in coarse-bedded steep streams where widely differing sediment supply, bed stability, and complex flow hydraulics greatly affect amounts and sizes of transported gravel particles. This study explains how properties of bed material surface and subsurface size distributions are directly related to gravel transport and may be used for prediction of gravel transport and flow competence relations. Gravel transport, flow competence, and bed material size were measured in step-pool and plane-bed streams. Power functions were fitted to gravel transport QB=aQb and flow competence Dmax=cQd relations; Q is water discharge. Frequency distributions of surface FDsurf and subsurface FDsub bed material were likewise described by power functions FDsurf=hD j and FDsub=kDm fitted over six 0.5-phi size classes within 4 to 22.4 mm. Those gravel sizes are typically mobile even in moderate floods. Study results show that steeper subsurface bed material size distributions lead to steeper gravel transport and flow competence relations, whereas larger amounts of sediment contained in those 6 size bedmaterial classes (larger h and k) flatten the relations. Similarly, steeper surface size distributions decrease the coefficients of the gravel transport and flow competence relations, whereas larger amounts of sediment within the six bed material classes increase the intercepts of gravel transport and flow competence relations. Those relations are likely causative in streams where bedload stems almost entirely from the channel bed as opposed to direct (unworked) contributions from hillslopes and tributaries. The exponent of the subsurface bed material distribution m predicted the gravel transport exponent b with r2 near 0.7 and flow competence exponent d with r2 near 0.5. The intercept of bed surface distributions h increased the intercept a of gravel transport and c of the flow competence relations with r2 near 0.6.

Field study and simulation of diurnal temperature effects on infiltration and variably saturated flow beneath an ephemeral stream

USGS Publications Warehouse

Dudek Ronan, Anne; Prudic, David E.; Thodal, Carl E.; Constantz, Jim

1998-01-01

Two experiments were performed to investigate flow beneath an ephemeral stream and to estimate streambed infiltration rates. Discharge and stream-area measurements were used to determine infiltration rates. Stream and subsurface temperatures were used to interpret subsurface flow through variably saturated sediments beneath the stream. Spatial variations in subsurface temperatures suggest that flow beneath the streambed is dependent on the orientation of the stream in the canyon and the layering of the sediments. Streamflow and infiltration rates vary diurnally: Streamflow is lowest in late afternoon when stream temperature is greatest and highest in early morning when stream temperature is least. The lower afternoon Streamflow is attributed to increased infiltration rates; evapotranspiration is insufficient to account for the decreased Streamflow. The increased infiltration rates are attributed to viscosity effects on hydraulic conductivity from increased stream temperatures. The first set of field data was used to calibrate a two-dimensional variably saturated flow model that includes heat transport. The model was calibrated to (1) temperature fluctuations in the subsurface and (2) infiltration rates determined from measured Streamflow losses. The second set of field data was to evaluate the ability to predict infiltration rates on the basis of temperature measurements alone. Results indicate that the variably saturated subsurface flow depends on downcanyon layering of the sediments. They also support the field observations in indicating that diurnal changes in infiltration can be explained by temperature dependence of hydraulic conductivity. Over the range of temperatures and flows monitored, diurnal stream temperature changes can be used to estimate streambed infiltration rates. It is often impractical to maintain equipment for determining infiltration rates by traditional means; however, once a model is calibrated using both infiltration and temperature data, only relatively inexpensive temperature monitoring can later yield infiltration rates that are within the correct order of magnitude.

Tracing salt provenance in McMurdo Dry Valley soils by using magnesium isotopes

NASA Astrophysics Data System (ADS)

Cuozzo, N.; Sletten, R. S.; Hu, Y.; Teng, F. Z.

2016-12-01

The McMurdo Dry Valleys (MDV) are a hyper-arid polar desert that contain a rich geologic record in permafrost that has been preserved over millions of years. Soluble salts accumulate through the surface and subsurface of MDV soils. Sources of salt accumulation include mineral weathering, transport of marine aerosols, and possible glacial meltwater. This project seeks to study the provenance of these salts in a 30-meter ice cemented permafrost core collected in Beacon Valley. The ice-rich core was thawed and water extracted by centrifugation using a double bottom centrifuge tube. The extracted water was analyzed for ionic composition, pH, and Mg isotopes (δ26Mg), which are useful in interpreting provenance. The ionic and δ26Mg values show a disconformity at around 7 meters. Above 7 meters, δ26Mg values vary between -0.76 to -0.52, indicating rock-water interactions. These samples are isotopically heavier than the lower section of the core and can be explained by a slow accumulation of sediment and warmer near-surface temperatures that allow for greater chemical weathering of dolerite in the ice-cemented, debris-rich permafrost core. This interpretation is also supported by the more alkaline pH values (7.07 - 7.54) above 7 meters, which is consistent with chemical weathering of dolerite. In comparison, salt samples below 7 meters have δ26Mg values between -0.95 to -0.84, which overlaps with modern seawater (δ26Mg = -0.83 ± 0.09) and is fairly consistent throughout the rest of the core. Furthermore, below a depth of 7 meters, Mg/Na and Mg/K ratios are also similar to modern seawater. In summary, these results indicate differing sources of salts along the depth of the Dry Valley permafrost core, changing from a marine-dominant signature in the deeper section to a stronger weathered signal in the upper section. Additional work dating the sediment using cosmogenic nuclides provides a history for the burial of the sediments in the permafrost core and may provide broad scale paleoclimatic implications.

Origin, evolution and sedimentary processes associated with a late Miocene submarine landslide, southeast Spain

NASA Astrophysics Data System (ADS)

Sola, F.; Puga-Bernabéu, Á.; Aguirre, J.; Braga, J. C.

2018-02-01

A submarine landslide, the Alhama de Almería Slide, influenced late Tortonian and early Messinian (late Miocene) sedimentary processes in the vicinity of Alhama de Almería in southeast Spain. Its 220-m-high headscarp and deposits are now subaerially exposed. The landslide occurred at the northern slope of the antecedent relief of the present-day Sierra de Gádor mountain range. This is a large antiform trending east-west to east-northeast-west-southwest, which has been uplifting since the late Miocene due to convergence of the African and Eurasian plates. During the Tortonian, this relief was an island separated from the Iberian Peninsula mainland by the Alpujarra corridor, a small and narrow intermontane basin of the Betic Cordillera in the western Mediterranean Sea. The materials involved in the slope failure were Triassic dolostones and phyllites from the metamorphic Alpujárride Complex and Tortonian marine conglomerates, sandstones, and marls that formed an initial sedimentary cover on the basement rocks. Coherent large masses of metamorphic rocks and Miocene deposits at the base of the headscarp distally change to chaotic deposits of blocks of different lithologies embedded in upper Tortonian marine marls, and high-strength cohesive debrites. During downslope sliding, coherent carbonate blocks brecciated due to their greater strength. Phyllites disintegrated, forming a cohesive matrix that engulfed and/or sustained the carbonate blocks. Resedimented, channelized breccias were formed by continuing clast collision, bed fragmentation, and disaggregation of the failed mass. The conditions leading to rock/sediment failure were favoured by steep slopes and weak planes at the contact between the basement carbonates and phyllites. Displacement of collapsed rocks created a canyon-like depression at the southeast edge of the landslide. This depression funnelled sediment gravity flows that were generated upslope, promoting local thick accumulations of sediments during the latest Tortonian-earliest Messinian. The insights from this exposed outcrop have implications for understanding the mechanisms and products of mass-transport deposits on the modern seafloor and the recognition of past failures from subsurface records.

The Petermann Glacier Experiment, NW Greenland

NASA Astrophysics Data System (ADS)

Mix, A. C.; Jakobsson, M.; Andrews, J. T.; Jennings, A. E.; Mayer, L. A.; Marcott, S. A.; Muenchow, A.; Stoner, J. S.; Andresen, C. S.; Nicholls, K. W.; Anderson, S. T.; Brook, E.; Ceperley, E. G.; Cheseby, M.; Clark, J.; Dalerum, F.; Dyke, L. M.; Einarsson, D.; Eriksson, B.; Frojd, C.; Glueder, A.; Hedman, U.; Heirman, K.; Heuzé, C.; Hogan, K.; Holden, R.; Holm, C.; Jerram, K.; Krutzfeldt, J.; Nicolas, L.; Par, L.; Lomac-MacNair, K.; Madlener, S.; McKay, J. L.; Meijer, T.; Meiton, A.; Brian, M.; Mohammed, R.; Molin, M.; Moser, C.; Normark, E.; Padman, J.; Pecnerova, P.; Reilly, B.; Reusche, M.; Ross, A.; Stranne, C.; Trinhammer, P.; Walczak, M. H.; Walczak, P.; Washam, P.; Karasti, M.; Anker, P.

2016-12-01

The Petermann Glacier Experiment is a comprehensive study on land, ocean, and ice in Northwest Greenland, staged from Swedish Icebreaker Oden in 2015 as a collaboration between the US, Sweden, UK, and Denmark. This talk introduces the strategic goals of the experiment and connects the various scientific results. Petermann Glacier drains a significant marine-based sector of the northern Greenland Ice Sheet and terminates in a floating ice tongue, one of the largest remaining systems of its kind in the northern hemisphere. Records of the modern state of Petermann Glacier and its past variations are of interest to understand the sensitivity of marine terminating outlet glaciers to change, and to constrain the rates and extent of changes that have actually occurred. With this case study we are learning the rules of large scale dynamics that cannot be understood from modern observations alone. Although past behavior is not an simple analog for the future, and no single system captures all possible behaviors, insights from these case studies can be applied through models to better project how similar systems may change in the future. The Petermann Expedition developed the first comprehensive bathymetric maps of the region, drilled through the floating ice tongue to obtain sub-shelf sediment cores near the grounding line and to monitor sub-ice conditions, recovered a broad array of sediment cores documenting changing oceanic conditions in Petermann Fjord, Hall Basin, and Nares Strait, measured watercolumn properties to trace subsurface watermasses that bring heat from the Arctic Ocean into deep Petermann Fjord to melt the base of the floating ice tongue, developed a detailed record of relative sealevel change on land to constrain past ice loads, and recovered pristine boulders for cosmogenic exposure dating of areal ice retreat on land. Together, these studies are shedding new light on the dynamics of past glaciation in Northwest Greenland, and contributing to fundamental understanding of large marine-terminating outlet glacier systems, which are threatened by global warming and poised to contribute to global sealevel rise in the future. Further information in the Petermann Glacier Experiment is available at https://petermannsglacialhistory.wordpress.com

New Insights into an Old Cycle: The Marine Phosphorus Cycle and the Formation of Critical Phosphate Rock Resources (Invited)

NASA Astrophysics Data System (ADS)

Filippelli, G. M.

2010-12-01

The cycling and geochemistry of phosphorus (P) in the marine environment is a critical component of biological productivity and of resource availability: P control the long-term carbon cycle via its role as a limiting nutrient, and the burial and concentration of P within marine sediments dictates the quality and availability of P as a fertilizer component from a resources standpoint. Given the projections of severe P fertilizer limitation over the next several centuries, understanding the controls on P geochemistry and concentration into a minable resource is critical in sustaining global populations. Several critical aspects of the marine P cycle have been uncovered over the past few decades which have clarified our understanding of P burial and concentration. First, the initial authigenic process of P mineralization within marine sediments, termed phosphogenesis, seems to occur regardless of marine setting. Phosphogenesis results from the release of P into sedimentary pore waters from organic and oxide-bound fractions, and the subsequent supersaturation with respect to carbonate fluorapatite. In sediment-starved basins with significant upwelling-driven productivity, the supply of P into sedimentary pore waters can be so high that visibly apparent layers of carbonate fluorapatite can be formed. Even in such environments, however, the mineral P content is too low to be of economic value unless it has undergone concentration via sediment reworking, a common occurrence in some dynamic continental margin environments. Thus, a combination of phosphogenesis in a high productivity setting plus sediment starvation plus condensation via reworking are necessary to produce phosphorites, sedimentary rocks with high P contents which are ideal as fertilizer-grade P resources. Given these special marine conditions, phosphorites are largely distributed along ancient marine environments (with the exception of the nearly-depleted atoll guano reserves). The largest currently-identified minable reservoirs of ore-grade P are found in the United States, in China, and in Morocco. Numerous less-economic sedimentary deposits exist, but these deposits are more dilute and represent former marine settings without the trifecta of productivity, geochemistry and sedimentology that makes phosphorites economically viable.

Culturable prokaryotic diversity of deep, gas hydrate sediments: first use of a continuous high-pressure, anaerobic, enrichment and isolation system for subseafloor sediments (DeepIsoBUG)

PubMed Central

Parkes, R John; Sellek, Gerard; Webster, Gordon; Martin, Derek; Anders, Erik; Weightman, Andrew J; Sass, Henrik

2009-01-01

Deep subseafloor sediments may contain depressurization-sensitive, anaerobic, piezophilic prokaryotes. To test this we developed the DeepIsoBUG system, which when coupled with the HYACINTH pressure-retaining drilling and core storage system and the PRESS core cutting and processing system, enables deep sediments to be handled without depressurization (up to 25 MPa) and anaerobic prokaryotic enrichments and isolation to be conducted up to 100 MPa. Here, we describe the system and its first use with subsurface gas hydrate sediments from the Indian Continental Shelf, Cascadia Margin and Gulf of Mexico. Generally, highest cell concentrations in enrichments occurred close to in situ pressures (14 MPa) in a variety of media, although growth continued up to at least 80 MPa. Predominant sequences in enrichments were Carnobacterium, Clostridium, Marinilactibacillus and Pseudomonas, plus Acetobacterium and Bacteroidetes in Indian samples, largely independent of media and pressures. Related 16S rRNA gene sequences for all of these Bacteria have been detected in deep, subsurface environments, although isolated strains were piezotolerant, being able to grow at atmospheric pressure. Only the Clostridium and Acetobacterium were obligate anaerobes. No Archaea were enriched. It may be that these sediment samples were not deep enough (total depth 1126–1527 m) to obtain obligate piezophiles. PMID:19694787

Subsurface sediment contamination during borehole drilling with an air-actuated down-hole hammer.

PubMed

Malard, Florian; Datry, Thibault; Gibert, Janine

2005-10-01

Drilling methods can severely alter physical, chemical, and biological properties of aquifers, thereby influencing the reliability of water samples collected from groundwater monitoring wells. Because of their fast drilling rate, air-actuated hammers are increasingly used for the installation of groundwater monitoring wells in unconsolidated sediments. However, oil entrained in the air stream to lubricate the hammer-actuating device can contaminate subsurface sediments. Concentrations of total hydrocarbons, heavy metals (Cu, Ni, Cr, Zn, Pb, and Cd), and nutrients (particulate organic carbon, nitrogen, and phosphorus) were measured in continuous sediment cores recovered during the completion of a 26-m deep borehole drilled with a down-hole hammer in glaciofluvial deposits. Total hydrocarbons, Cu, Ni, Cr and particulate organic carbon (POC) were all measured at concentrations far exceeding background levels in most sediment cores. Hydrocarbon concentration averaged 124 +/- 118 mg kg(-1) dry sediment (n = 78 samples) with peaks at depths of 8, 14, and 20 m below the soil surface (maximum concentration: 606 mg kg(-1)). The concentrations of hydrocarbons, Cu, Ni, Cr, and POC were positively correlated and exhibited a highly irregular vertical pattern, that probably reflected variations in air loss within glaciofluvial deposits during drilling. Because the penetration of contaminated air into the formation is unpreventable, the representativeness of groundwater samples collected may be questioned. It is concluded that air percussion drilling has strong limitations for well installation in groundwater quality monitoring surveys.

Microbial transformations of arsenic: Mobilization from glauconitic sediments to water

USGS Publications Warehouse

Mumford, Adam C.; Barringer, Julia L.; Benzel, William M.; Reilly, Pamela A.; Young, L.Y.

2012-01-01

In the Inner Coastal Plain of New Jersey, arsenic (As) is released from glauconitic sediment to carbon- and nutrient-rich shallow groundwater. This As-rich groundwater discharges to a major area stream. We hypothesize that microbes play an active role in the mobilization of As from glauconitic subsurface sediments into groundwater in the Inner Coastal Plain of New Jersey. We have examined the potential impact of microbial activity on the mobilization of arsenic from subsurface sediments into the groundwater at a site on Crosswicks Creek in southern New Jersey. The As contents of sediments 33–90 cm below the streambed were found to range from 15 to 26.4 mg/kg, with siderite forming at depth. Groundwater beneath the streambed contains As at concentrations up to 89 μg/L. Microcosms developed from site sediments released 23 μg/L of As, and active microbial reduction of As(V) was observed in microcosms developed from site groundwater. DNA extracted from site sediments was amplified with primers for the 16S rRNA gene and the arsenate respiratory reductase gene, arrA, and indicated the presence of a diverse anaerobic microbial community, as well as the presence of potential arsenic-reducing bacteria. In addition, high iron (Fe) concentrations in groundwater and the presence of iron-reducing microbial genera suggests that Fe reduction in minerals may provide an additional mechanism for release of associated As, while arsenic-reducing microorganisms may serve to enhance the mobility of As in groundwater at this site.

Study of Sound Attenuation in Sediments.

DTIC Science & Technology

1984-12-01

acoustics of porous media by the Biot model . X is often referred to as the tortuosity of the frame, but it should not be confused with the hydraulic...measured in nepers/m. A. The Hamilton Model Hamilton has been investigating the acoustic properties of marine sediments since the early 1950s. 5- 6...Poisson’s ratios in marine sediments and rocks," J. Acoust . p Soc. Am. 66, 1093-1101 (1979). 10. E.L. Hamilton, "Geoacoustic modelling of the sea floor