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Sample records for mass trapping scheme

  1. Evaluation of Pulse Counting for the Mars Organic Mass Analyzer (MOMA) Ion Trap Detection Scheme

    NASA Technical Reports Server (NTRS)

    Van Amerom, Friso H.; Short, Tim; Brinckerhoff, William; Mahaffy, Paul; Kleyner, Igor; Cotter, Robert J.; Pinnick, Veronica; Hoffman, Lars; Danell, Ryan M.; Lyness, Eric I.

    2011-01-01

    The Mars Organic Mass Analyzer is being developed at Goddard Space Flight Center to identify organics and possible biological compounds on Mars. In the process of characterizing mass spectrometer size, weight, and power consumption, the use of pulse counting was considered for ion detection. Pulse counting has advantages over analog-mode amplification of the electron multiplier signal. Some advantages are reduced size of electronic components, low power consumption, ability to remotely characterize detector performance, and avoidance of analog circuit noise. The use of pulse counting as a detection method with ion trap instruments is relatively rare. However, with the recent development of high performance electrical components, this detection method is quite suitable and can demonstrate significant advantages over analog methods. Methods A prototype quadrupole ion trap mass spectrometer with an internal electron ionization source was used as a test setup to develop and evaluate the pulse-counting method. The anode signal from the electron multiplier was preamplified. The an1plified signal was fed into a fast comparator for pulse-level discrimination. The output of the comparator was fed directly into a Xilinx FPGA development board. Verilog HDL software was written to bin the counts at user-selectable intervals. This system was able to count pulses at rates in the GHz range. The stored ion count nun1ber per bin was transferred to custom ion trap control software. Pulse-counting mass spectra were compared with mass spectra obtained using the standard analog-mode ion detection. Prelin1inary Data Preliminary mass spectra have been obtained for both analog mode and pulse-counting mode under several sets of instrument operating conditions. Comparison of the spectra revealed better peak shapes for pulse-counting mode. Noise levels are as good as, or better than, analog-mode detection noise levels. To artificially force ion pile-up conditions, the ion trap was overfilled

  2. A lethal ovitrap-based mass trapping scheme for dengue control in Australia: I. Public acceptability and performance of lethal ovitraps.

    PubMed

    Ritchie, S A; Rapley, L P; Williams, C; Johnson, P H; Larkman, M; Silcock, R M; Long, S A; Russell, R C

    2009-12-01

    We report on the first field evaluation of the public acceptability and performance of two types of lethal ovitrap (LO) in three separate trials in Cairns, Australia. Health workers were able to set standard lethal ovitraps (SLOs) in 75 and 71% of premise yards in the wet and dry season, respectively, and biodegradable lethal ovitraps (BLOs) in 93% of yards. Public acceptance, measured as retention of traps by residents, was high for both trap types, with <9% of traps missing after 4 weeks. Traps retaining water after 4 weeks were 78 and 34% for the two SLO trials and 58% for the BLOs. The 'failure rate' in the 535 BLOs set in the field for 4 weeks was 47%, of which 19% were lost, 51% had holes from probable insect chewing, 23% were knocked over, 7% had dried by evaporation and 1% were split. There was no significant difference in the failure rate of BLOs set on porous (grass, soil and mulch) versus solid (tiles, concrete, wood and stone) substrates. The SLOs and the BLOs were readily acceptable to ovipositing Aedes aegypti L. (Diptera: Culicidae); the mean number of eggs/trap was 6 and 15, for the dry season and wet season SLO trial, respectively, and 15 for the BLO wet season trial. Indeed, 84-94% of premise yards had egg positive SLOs or BLOs. A high percentage of both wet and dry season SLOs (29 and 70%, respectively) and BLOs (62%) that were dry after 4 weeks were egg positive, indicating the traps had functioned. Lethal strips from SLOs and BLOs that had been exposed for 4 weeks killed 83 and 74%, respectively, of gravid Ae. aegypti in laboratory assays. These results indicate that mass trapping schemes using SLOs and BLOs are not rejected by the public and effectively target gravid Ae. aegypti. The impact of the interventions on mosquito populations is described in a companion paper.

  3. Mass trapping for Anastrepha suspensa

    USDA-ARS?s Scientific Manuscript database

    Mass trapping has been found to be highly effective for control of pest fruit flies when populations are low and a highly effective lure is available for the target species. Successful population control through mass trapping is an indicator that attract-and-kill bait stations may be equally succes...

  4. Mini ion trap mass spectrometer

    DOEpatents

    Dietrich, D.D.; Keville, R.F.

    1995-09-19

    An ion trap is described which operates in the regime between research ion traps which can detect ions with a mass resolution of better than 1:10{sup 9} and commercial mass spectrometers requiring 10{sup 4} ions with resolutions of a few hundred. The power consumption is kept to a minimum by the use of permanent magnets and a novel electron gun design. By Fourier analyzing the ion cyclotron resonance signals induced in the trap electrodes, a complete mass spectra in a single combined structure can be detected. An attribute of the ion trap mass spectrometer is that overall system size is drastically reduced due to combining a unique electron source and mass analyzer/detector in a single device. This enables portable low power mass spectrometers for the detection of environmental pollutants or illicit substances, as well as sensors for on board diagnostics to monitor engine performance or for active feedback in any process involving exhausting waste products. 10 figs.

  5. Mini ion trap mass spectrometer

    DOEpatents

    Dietrich, Daniel D.; Keville, Robert F.

    1995-01-01

    An ion trap which operates in the regime between research ion traps which can detect ions with a mass resolution of better than 1:10.sup.9 and commercial mass spectrometers requiring 10.sup.4 ions with resolutions of a few hundred. The power consumption is kept to a minimum by the use of permanent magnets and a novel electron gun design. By Fourier analyzing the ion cyclotron resonance signals induced in the trap electrodes, a complete mass spectra in a single combined structure can be detected. An attribute of the ion trap mass spectrometer is that overall system size is drastically reduced due to combining a unique electron source and mass analyzer/detector in a single device. This enables portable low power mass spectrometers for the detection of environmental pollutants or illicit substances, as well as sensors for on board diagnostics to monitor engine performance or for active feedback in any process involving exhausting waste products.

  6. A lethal ovitrap-based mass trapping scheme for dengue control in Australia: II. Impact on populations of the mosquito Aedes aegypti.

    PubMed

    Rapley, L P; Johnson, P H; Williams, C R; Silcock, R M; Larkman, M; Long, S A; Russell, R C; Ritchie, S A

    2009-12-01

    In Cairns, Australia, the impacts on Aedes aegypti L. (Diptera: Culicidae) populations of two types of 'lure & kill' (L&K) lethal ovitraps (LOs), the standard lethal ovitrap (SLO) and the biodegradable lethal ovitrap (BLO) were measured during three mass-trapping interventions. To assess the efficacy of the SLO, two interventions (one dry season and one wet season) were conducted in three discrete areas, each lasting 4 weeks, with the following treatments: (i) SLOs (>200 traps, approximately 4/premise), BG-sentinel traps (BGSs; approximately 15, 1/premise) and larval control (container reduction and methoprene treatment) and (ii) larval control alone, and (iii) untreated control. Female Ae. aegypti populations were monitored for 4 weeks pre- and post-treatment in all three areas using BGSs and sticky ovitraps (SOs) or non-lethal regular ovitraps (ROs). In the dry season, 206 SLOs and 15 BGSs set at 54 and 15 houses, respectively, caught and killed an estimated 419 and 73 female Ae. aegypti, respectively. No significant decrease in collection size of female Ae. aegypti could be attributed to the treatments. In the wet season, 243 SLOs and 15 BGSs killed approximately 993 and 119 female Ae. aegypti, respectively. The mean number of female Ae. aegypti collected after 4 weeks with SOs and BGSs was significantly less than the control (LSD post-hoc test). The third mass-trapping intervention was conducted using the BLO during the wet season in Cairns. For this trial, three treatment areas were each provided with BLOs (>500, approximately 4/premise) plus larval control, and an untreated control area was designated. Adult female Ae. aegypti were collected for 4 weeks pre- and post-treatment using 15 BGSs and 20 SOs. During this period, 53.2% of BLOs contained a total of 6654 Ae. aegypti eggs. Over the intervention period, collections of Ae. aegypti in the treatment areas were significantly less than in the control area for BGSs but not SOs. An influx of relatively large

  7. Microscale ion trap mass spectrometer

    DOEpatents

    Ramsey, J. Michael; Witten, William B.; Kornienko, Oleg

    2002-01-01

    An ion trap for mass spectrometric chemical analysis of ions is delineated. The ion trap includes a central electrode having an aperture; a pair of insulators, each having an aperture; a pair of end cap electrodes, each having an aperture; a first electronic signal source coupled to the central electrode; a second electronic signal source coupled to the end cap electrodes. The central electrode, insulators, and end cap electrodes are united in a sandwich construction where their respective apertures are coaxially aligned and symmetric about an axis to form a partially enclosed cavity having an effective radius r.sub.0 and an effective length 2z.sub.0, wherein r.sub.0 and/or z.sub.0 are less than 1.0 mm, and a ratio z.sub.0 /r.sub.0 is greater than 0.83.

  8. Mass Trapping for Anastrepha suspensa

    USDA-ARS?s Scientific Manuscript database

    ABSTRACT In field tests conducted in south Florida to test grape juice as an alternative inexpensive bait for Anastrepha suspensa Loew, high numbers of Zaprionus indianus Gupta were captured in traps baited with aqueous grape juice. These experiments included comparisons of grape juice with standard...

  9. Resonance ionization of rubidium in an ion trap mass spectrometer

    SciTech Connect

    Whitten, W.B.; Ramsey, J.M.; Goeringer, D.E.; Buckley, B.T.

    1990-01-01

    We have recently initiated a study of resonance ionization processes in a quadrupole ion storage trap. The trap is a commercially available Ion Trap Detector that uses the voltage dependence of ion mass instability to obtain a mass spectrum of the trapped ions. We have modified the trap to permit laser excitation of atomic and molecular species within the quadrupole electrodes. Mass resolved resonance ionization spectra have been obtained for NO and Rb, described below. Rb was selected for this study for a number of reasons. We want to explore the potential of the ion trap for high resolution (Doppler free) resonance ionization spectroscopy with CW laser excitation. Rb can be excited to upper Rydberg levels with a series of transitions that can be induced with commercially available semiconductor diode lasers. In addition, levels in the same energy range can be reached through two-photon processes with visible wavelength tunable dye lasers or with single-photon processes after the laser is frequency doubled. The upper Rydberg levels can be ionized by photons, electric field, or collisions. Collisional ionization of a reservoir of Rydberg atoms may be a sensitive scheme for detecting electronegative species. RB has two stable isotopes with nonzero nuclear spin so that isotopic and hyperfine splittings can be used to assess the spectral resolution that is attained.

  10. 10 K Ring Electrode Trap - Tandem Mass Spectrometer for Infrared Spectroscopy of Mass Selected Ions

    SciTech Connect

    Goebbert, Daniel J.; Meijer, Gerard; Asmis, Knut R.

    2009-03-17

    A novel instrumental setup for measuring infrared photodissociation spectra of buffer gas cooled, mass-selected ions is described and tested. It combines a cryogenically cooled, linear radio frequency ion trap with a tandem mass spectrometer, optimally coupling continuous ion sources to pulsed laser experiments. The use of six independently adjustable DC potentials superimposed over the trapping radio frequency field provides control over the ion distribution within, as well as the kinetic energy distribution of the ions extracted from the ion trap. The scheme allows focusing the ions in space and time, such that they can be optimally irradiated by a pulsed, widely tunable infrared photodissociation laser. Ion intensities are monitored with a time-of-flight mass spectrometer mounted orthogonally to the ion trap axis.

  11. Penning trap mass measurement of 72Br

    NASA Astrophysics Data System (ADS)

    Valverde, A. A.; Bollen, G.; Cooper, K.; Eibach, M.; Gulyuz, K.; Izzo, C.; Morrissey, D. J.; Ringle, R.; Sandler, R.; Schwarz, S.; Sumithrarachchi, C. S.; Villari, A. C. C.

    2015-03-01

    The Low Energy Beam and Ion Trap (LEBIT) Penning trap mass spectrometer was used to perform an improved-precision mass measurement of 72Br and the low-lying isomeric state, Brm72, giving mass excesses of -59 062.2 (1.0 )keV and -58 960.9 (1.2 )keV , respectively. These values are consistent with the values from the 2012 atomic mass evaluation [Chin. Phys. C 36, 1603 (2012), 10.1088/1674-1137/36/12/003] and the Nubase2012 evaluation of nuclear properties [Chin. Phys. C 36, 1157 (2012), 10.1088/1674-1137/36/12/001]. The uncertainties on the mass of the ground state and isomeric state have been reduced by a factor of seven.

  12. Non-destructive ion trap mass spectrometer and method

    DOEpatents

    Frankevich, Vladimir E.; Soni, Manish H.; Nappi, Mario; Santini, Robert E.; Amy, Jonathan W.; Cooks, Robert G.

    1997-01-01

    The invention relates to an ion trap mass spectrometer of the type having an ion trapping volume defined by spaced end caps and a ring electrode. The ion trap includes a small sensing electrode which senses characteristic motion of ions trapped in said trapping volume and provides an image current. Ions are excited into characteristic motion by application of an excitation pulse to the trapped ions. The invention also relates to a method of operating such an ion trap.

  13. Multiplexed four-channel rectilinear ion trap mass spectrometer.

    PubMed

    Kothari, Sameer; Song, Qingyu; Xia, Yu; Fico, Miriam; Taylor, Dennis; Amy, Jonathan W; Stafford, George; Cooks, R Graham

    2009-02-15

    A four-channel multiplexed mass spectrometer with rectilinear ion trap (RIT) mass analyzers was designed, constructed, and characterized. The system consists of four parallel atmospheric pressure ion (API) sources, four RIT mass analyzers, four sets of ion optical elements, and four conversion dynode detectors. The complete instrument is housed in a single vacuum manifold with a common vacuum system. It has a relatively small footprint, and costs and complexity were minimized and controls simplified by sharing the electronics and control modules among different channels. Each channel of the instrument can be operated in either positive or negative ion mode with a choice of ionization methods to improve the information content from an experiment. Also, the instrument is equipped with simultaneous data acquisition capabilities from all four channels, but the use of a common RF electronics system limits the degree to which the analyzer channels can be scanned independently. The instrument was characterized over the mass/charge range of 150 to 1300 Th. Mass misassignments in different ion traps because of machining and assembly tolerances were avoided by the application of supplementary direct current signals to each mass analyzer to correct mass offsets. A multiplexed automatic gain control (AGC) scheme was developed to control the ion population in each of the traps independently. These two features allow tandem mass spectrometry to be performed with an isolation window of 1 Th so trapping identical ions in all four channels. There are two principal modes of operation. In one, the same sample is analyzed in all four channels using different ionization methods to increase the information content of the analysis. In the other mode of operation, different samples are analyzed in all four channels with the same ionization method, so providing higher throughput. These capabilities were demonstrated by examining lipids produced by Escherichia coli and complex mixtures

  14. Miniaturized Linear Wire Ion Trap Mass Analyzer.

    PubMed

    Wu, Qinghao; Li, Ailin; Tian, Yuan; Zare, Richard N; Austin, Daniel E

    2016-08-02

    We report a linear ion trap (LIT) in which the electric field is formed by fine wires held under tension and accurately positioned using holes drilled in two end plates made of plastic. The coordinates of the hole positions were optimized in simulation. The stability diagram and mass spectra using boundary ejection were compared between simulation and experiment and good agreement was found. The mass spectra from experiments show peak widths (fwhm) in units of mass-to-charge of around 0.38 Th using a scan rate of 3830 Th/s. The limits of detection are 137 ppbv and 401 ppbv for benzene and toluene, respectively. Different sizes of the wire ion trap can be easily fabricated by drilling holes in scaled positions. Other distinguishing features, such as high ion and photon transmission, low capacitance, high tolerance to mechanical and assembly error, and low weight, are discussed.

  15. Penning trap mass measurements on nobelium isotopes

    SciTech Connect

    Dworschak, M.; Block, M.; Ackermann, D.; Herfurth, F.; Hessberger, F. P.; Hofmann, S.; Vorobyev, G. K.; Audi, G.; Blaum, K.; Droese, C.; Marx, G.; Schweikhard, L.; Eliseev, S.; Ketter, J.; Fleckenstein, T.; Haettner, E.; Plass, W. R.; Scheidenberger, C.; Ketelaer, J.; Kluge, H.-J.

    2010-06-15

    The Penning trap mass spectrometer SHIPTRAP at GSI Darmstadt allows accurate mass measurements of radionuclides, produced in fusion-evaporation reactions and separated by the velocity filter SHIP from the primary beam. Recently, the masses of the three nobelium isotopes {sup 252-254}No were determined. These are the first direct mass measurements of transuranium elements, which provide new anchor points in this region. The heavy nuclides were produced in cold-fusion reactions by irradiating a PbS target with a {sup 48}Ca beam, resulting in production rates of the nuclei of interest of about one atom per second. In combination with data from decay spectroscopy our results are used to perform a new atomic-mass evaluation in this region.

  16. Penning trap mass measurements on nobelium isotopes

    NASA Astrophysics Data System (ADS)

    Dworschak, M.; Block, M.; Ackermann, D.; Audi, G.; Blaum, K.; Droese, C.; Eliseev, S.; Fleckenstein, T.; Haettner, E.; Herfurth, F.; Heßberger, F. P.; Hofmann, S.; Ketelaer, J.; Ketter, J.; Kluge, H.-J.; Marx, G.; Mazzocco, M.; Novikov, Yu. N.; Plaß, W. R.; Popeko, A.; Rahaman, S.; Rodríguez, D.; Scheidenberger, C.; Schweikhard, L.; Thirolf, P. G.; Vorobyev, G. K.; Wang, M.; Weber, C.

    2010-06-01

    The Penning trap mass spectrometer SHIPTRAP at GSI Darmstadt allows accurate mass measurements of radionuclides, produced in fusion-evaporation reactions and separated by the velocity filter SHIP from the primary beam. Recently, the masses of the three nobelium isotopes No252-254 were determined. These are the first direct mass measurements of transuranium elements, which provide new anchor points in this region. The heavy nuclides were produced in cold-fusion reactions by irradiating a PbS target with a Ca48 beam, resulting in production rates of the nuclei of interest of about one atom per second. In combination with data from decay spectroscopy our results are used to perform a new atomic-mass evaluation in this region.

  17. Mass measurements with a Penning trap mass spectrometer at ISOLDE

    SciTech Connect

    Bollen, G.; Ames, F.; Schark, E.; Audi, G.; Lunney, D.; Saint Simon, M. de; Beck, D.; Herfurth, F.; Kluge, H.-J.; Kohl, A.; Schwarz, S.; Moore, R. B.; Szerypo, J.

    1998-12-21

    Penning trap mass measurements on radioactive isotopes are performed with the ISOLTRAP mass spectrometer at ISOLDE/CERN. In the last years the applicability of the spectrometer has been considerably extended. The most recent measurements were carried out on isotopes of rare earth elements and on isotopes with Z=80-85. An accuracy of {delta}m/m{approx_equal}1{center_dot}10{sup -7} was achieved.

  18. Spatial analysis of mass trapping: how close is close enough?

    PubMed

    Suckling, David M; Stringer, Lloyd D; Kean, John M; Lo, Peter L; Bell, Vaughn; Walker, James Ts; Twidle, Andrew M; Jiménez-Pérez, Alfredo; El-Sayed, Ashraf M

    2015-10-01

    The identification of new attractants can present opportunities for developing mass trapping, but standard screening methods are needed to expedite this. We have developed a simple approach based on quantifying trap interference in 4 × 4 trap arrays with different spacings. We discuss results from sex pheromones in Lepidoptera (light brown apple moth, Epiphyas postvittana), Diptera (apple leaf curling midge, Dasineura mali) and Homoptera (citrophilous mealybug, Pseudococcus calceolariae), compared with a kairomone for New Zealand flower thrips (Thrips obscuratus). The ratio of catch in corner traps to catch in centre traps was 25:1 at 750 D. mali traps ha(-1) , and was still ∼5:1 at 16 traps ha(-1) , suggesting trap interference even at such low trap densities. Trap competition for sex pheromone lures at close spacing (<5 m) was evident in 16-trap arrays of P. calceolariae, but less so for E. postvittana. No trap competition was observed at 4 m spacings with the kairomone for T. obscuratus. The ratio of catch in traps in the corner and centre of a 16-trap array at different spacings offers a rapid preliminary assessment method for determining the potential for mass trapping. Additional knowledge of vital rates and dispersal is needed for predicting population suppression. Our approach should have value in mass trapping development. © 2014 Society of Chemical Industry. © 2014 Society of Chemical Industry.

  19. Fluid-dynamical scheme for equilibrium properties of two trapped fermion species with pairing interactions

    NASA Astrophysics Data System (ADS)

    Capuzzi, P.; Hernández, E. S.; Szybisz, L.

    2008-10-01

    We present a generalization of the fluid-dynamical scheme developed for nuclear physics to the case of two trapped fermion species with pairing interactions. To establish a macroscopic description of the mass and momentum conservation laws, we adopt a generalization of the usual Thomas-Fermi approach that includes the pairing energy. We analyze the equilibrium density and gap profiles for an equal population mixture of harmonically trapped Li6 atoms for different choices of the local equation of state. We examine slight departures from equilibrium within our formulation, finding that density oscillations can propagate as first sound coupled to pairing vibrations, that in a homogeneous fermion system exhibit a Bogoliubov-like quasiparticle spectrum. In this case, the dispersion relation for the coupled modes displays a rich scenario of stable, unstable, and damped regimes.

  20. Proton Transfer Reaction Ion Trap Mass Spectrometer

    SciTech Connect

    Prazeller, Peter; Palmer, Peter T.; Boscaini, Elena; Jobson, B Tom T.; Alexander, M. Lizabeth

    2003-06-11

    Proton transfer reaction mass spectrometry is a relatively new field that has attracted a great deal of interest in the last few years. This technique uses H₃Oþ as a chemical ionization (CI) reagent to measure volatile organic compounds (VOCs) in the parts per billion by volume (ppbv) to parts per trillion by volume (pptv) range. Mass spectra acquired with a proton transfer reaction mass spectrometer (PTR-MS) are simple because proton transfer chemical ionization is ‘soft’ and results in little or no fragmentation. Unfortunately, peak identification can still be difficult due to isobaric interferences. A possible solution to this problem is to couple the PTR drift tube to an ion trap mass spectrometer (ITMS). The use of an ITMS is appealing because of its ability to perform MS/MS and possibly distinguish between isomers and other isobars. Additionally, the ITMS duty cycle is much higher than that of a linear quadrupole so faster data acquisition rates are possible that will allow for detection of multiple compounds. Here we present the first results from a proton transfer reaction ion trap mass spectrometer (PTR-ITMS). The aim of this study was to investigate ion injection and storage efficiency of a simple prototype instrument in order to estimate possible detection limits of a second-generation instrument. Using this prototype a detection limit of 100 ppbv was demonstrated. Modifications are suggested that will enable further reduction in detection limits to the low-ppbv to high-pptv range. Furthermore, the applicability of MS/MS in differentiating between isobaric species was determined. MS/MS spectra of the isobaric compounds methyl vinyl ketone (MVK) and methacrolein (MACR) are presented and show fragments of different mass making differentiation possible, even when a mixture of both species is present in the same sample. However, MS/MS spectra of acetone and propanal produce fragments with the same molecular masses but with different intensity ratios

  1. Universal collisional activation ion trap mass spectrometry

    DOEpatents

    McLuckey, S.A.; Goeringer, D.E.; Glish, G.L.

    1993-04-27

    A universal collisional activation ion trap comprises an ion trapping means containing a bath gas and having connected thereto a noise signal generator. A method of operating a universal collisional activation ion trap comprises the steps of: providing an ion trapping means; introducing into the ion trapping means a bath gas; and, generating a noise signal within the ion trapping means; introducing into the ion trapping means a substance that, when acted upon by the noise signal, undergoes collisional activation to form product ions.

  2. Universal collisional activation ion trap mass spectrometry

    DOEpatents

    McLuckey, Scott A.; Goeringer, Douglas E.; Glish, Gary L.

    1993-01-01

    A universal collisional activation ion trap comprises an ion trapping means containing a bath gas and having connected thereto a noise signal generator. A method of operating a universal collisional activation ion trap comprises the steps of: providing an ion trapping means; introducing into the ion trapping means a bath gas; and, generating a noise signal within the ion trapping means; introducing into the ion trapping means a substance that, when acted upon by the noise signal, undergoes collisional activation to form product ions.

  3. Efficacy of commercial traps and food odor attractants for mass trapping of Anastrepha ludens (Diptera: Tephritidae).

    PubMed

    Lasa, Rodrigo; Velázquez, Olinda E; Ortega, Rafael; Acosta, Emilio

    2014-02-01

    One of the most important factors for the success of a mass trapping strategy to control a fruit fly involves the selection of an effective trap-lure combination. Because different species of fruit flies respond differently to the physical characteristics of a trap and to bait volatiles, the evaluation of commercial traps and lures that have proved useful against other tephtrids is necessary to determine their efficacy for mass trapping of Anastrepha ludens (Loew) (Diptera: Tephritidae). Under caged conditions, a commercial hemispherical trap with lateral holes (Maxitrap Plus) proved more attractive to A. ludens (both sexes) than five other commercial traps that were all baited with hydrolyzed protein. Among these traps, bottom invaginated traps and traps with invaginated lateral holes constructed with transparent cylinders had the best physical retention properties. When evaluated under field conditions, the lure was critical for the efficacy of the trap, and one of the traps that performed poorly in attraction and retention cage tests (MS2) resulted as one of the most effective traps when baited with CeraTrap lure. Considering the use of different trap models under field conditions, CeraTrap liquid bait was more effective in A. ludens capture than Biolure dry synthetic bait, but both lures were not replaced during the entire course of the experiment. The percentage of captured females was also slightly higher using CeraTrap lure (67.2%) than using Biolure baits (54.5-58.8%). In field tests, 75-81% of females were mated and no significant differences were observed among trap-lure combinations. Trap selectivity against nontarget adult lacewings also differed among trap-lure combinations.

  4. Proton Transfer Reaction Ion Trap Mass Spectrometer

    SciTech Connect

    Prazeller, Peter; Palmer, Peter T.; Boscaini, Elena; Jobson, B Tom; Alexander, M. Lizabeth

    2003-07-07

    Proton Transfer Reaction Mass Spectrometry (PTR-MS) is a relatively new field that has attracted a great deal of interest in the last several years. This technique uses H3O+ as a chemical ionization (CI) agent for measuring volatile organic compounds (VOCs) in the parts per billion by volume (ppbv) - parts per trillion by volume (pptv) range. PTR-MS mass spectra are simple because the ionization method of proton transfer is “soft”, resulting in little or no fragmentation. Unfortunately, the simplicity of the mass spectra can cause problems in peak identification due to isobaric interferences. A possible solution to this problem is to couple the PTR drift tube to an ion trap mass spectrometer (ITMS). ITMS is appealing because of the ability to perform MS/MS and possibly distinguish between isomers and other isobars. Additionally, the ITMS duty cycle is much higher than that of a linear quadrupole so faster data acquisition rates can be realized for detection of multiple compounds. We present here the first results from a Proton Transfer Reaction Ion Trap Mass Spectrometer (PTR-ITMS). The aim of this study was to investigate ion injection and storage efficiency of a simple prototype interface in order to estimate possible detection limits of a second generation instrument. Using this prototype a detection limit of 100 ppbv was demonstrated for the PTR-ITMS. Modifications are suggested that will enable further reduction in detection limits to the low ppbv to pptv range. Furthermore the applicability of MS/MS to differentiate between isobaric species was determined. MS/MS spectra of the isobaric compounds methyl vinyl ketone (MVK) and methacrolein (MACR) are presented and show fragments of different mass making a differentiation possible even when a mixture of both species is present in the same sample. MS/MS spectra of acetone and propanal produce fragments with the same molecular weight but different ratios, allowing quantitative distinction only if one species

  5. Mass trapping with MosquiTRAPs does not reduce Aedes aegypti abundance.

    PubMed

    Degener, Carolin Marlen; de Ázara, Tatiana Mingote Ferreira; Roque, Rosemary Aparecida; Rösner, Susanne; Rocha, Eliseu Soares Oliveira; Kroon, Erna Geessien; Codeço, Cláudia Torres; Nobre, Aline Araújo; Ohly, Jörg Johannes; Geier, Martin; Eiras, Álvaro Eduardo

    2015-06-01

    The objective of this study was to evaluate the effectiveness of Aedes aegypti mass trapping using the sticky trap MosquiTRAP (MQT) by performing a cluster randomised controlled trial in Manaus, state of Amazonas, Brazil. After an initial questionnaire and baseline monitoring of adult Ae. aegypti abundance with BG-Sentinel (BGS) traps in six clusters, three clusters were randomly assigned to the intervention arm where each participating household received three MQTs for mass trapping during 17 months. The remaining three clusters (control arm) did not receive traps. The effect of mass trapping on adult Ae. aegypti abundance was monitored fortnightly with BGS traps. During the last two months of the study, a serological survey was conducted. After the study, a second questionnaire was applied in the intervention arm. Entomological monitoring indicated that MQT mass trapping did not reduce adult Ae. aegypti abundance. The serological survey indicated that recent dengue infections were equally frequent in the intervention and the control arm. Most participants responded positively to questions concerning user satisfaction. According to the results, there is no evidence that mass trapping with MQTs can be used as a part of dengue control programs. The use of this sticky trap is only recommendable for dengue vector monitoring.

  6. Mass trapping with MosquiTRAPs does not reduce Aedes aegypti abundance

    PubMed Central

    Degener, Carolin Marlen; de Ázara, Tatiana Mingote Ferreira; Roque, Rosemary Aparecida; Rösner, Susanne; Rocha, Eliseu Soares Oliveira; Kroon, Erna Geessien; Codeço, Cláudia Torres; Nobre, Aline Araújo; Ohly, Jörg Johannes; Geier, Martin; Eiras, Álvaro Eduardo

    2015-01-01

    The objective of this study was to evaluate the effectiveness of Aedes aegypti mass trapping using the sticky trap MosquiTRAP (MQT) by performing a cluster randomised controlled trial in Manaus, state of Amazonas, Brazil. After an initial questionnaire and baseline monitoring of adult Ae. aegypti abundance with BG-Sentinel (BGS) traps in six clusters, three clusters were randomly assigned to the intervention arm where each participating household received three MQTs for mass trapping during 17 months. The remaining three clusters (control arm) did not receive traps. The effect of mass trapping on adult Ae. aegypti abundance was monitored fortnightly with BGS traps. During the last two months of the study, a serological survey was conducted. After the study, a second questionnaire was applied in the intervention arm. Entomological monitoring indicated that MQT mass trapping did not reduce adult Ae. aegypti abundance. The serological survey indicated that recent dengue infections were equally frequent in the intervention and the control arm. Most participants responded positively to questions concerning user satisfaction. According to the results, there is no evidence that mass trapping with MQTs can be used as a part of dengue control programs. The use of this sticky trap is only recommendable for dengue vector monitoring. PMID:25946154

  7. Electron source for a mini ion trap mass spectrometer

    DOEpatents

    Dietrich, Daniel D.; Keville, Robert F.

    1995-01-01

    An ion trap which operates in the regime between research ion traps which can detect ions with a mass resolution of better than 1:10.sup.9 and commercial mass spectrometers requiring 10.sup.4 ions with resolutions of a few hundred. The power consumption is kept to a minimum by the use of permanent magnets and a novel electron gun design. By Fourier analyzing the ion cyclotron resonance signals induced in the trap electrodes, a complete mass spectra in a single combined structure can be detected. An attribute of the ion trap mass spectrometer is that overall system size is drastically reduced due to combining a unique electron source and mass analyzer/detector in a single device. This enables portable low power mass spectrometers for the detection of environmental pollutants or illicit substances, as well as sensors for on board diagnostics to monitor engine performance or for active feedback in any process involving exhausting waste products.

  8. Electron source for a mini ion trap mass spectrometer

    DOEpatents

    Dietrich, D.D.; Keville, R.F.

    1995-12-19

    An ion trap is described which operates in the regime between research ion traps which can detect ions with a mass resolution of better than 1:10{sup 9} and commercial mass spectrometers requiring 10{sup 4} ions with resolutions of a few hundred. The power consumption is kept to a minimum by the use of permanent magnets and a novel electron gun design. By Fourier analyzing the ion cyclotron resonance signals induced in the trap electrodes, a complete mass spectra in a single combined structure can be detected. An attribute of the ion trap mass spectrometer is that overall system size is drastically reduced due to combining a unique electron source and mass analyzer/detector in a single device. This enables portable low power mass spectrometers for the detection of environmental pollutants or illicit substances, as well as sensors for on board diagnostics to monitor engine performance or for active feedback in any process involving exhausting waste products. 10 figs.

  9. An integrated ion trap and time-of-flight mass spectrometer for chemical and photo- reaction dynamics studies.

    PubMed

    Schowalter, Steven J; Chen, Kuang; Rellergert, Wade G; Sullivan, Scott T; Hudson, Eric R

    2012-04-01

    We demonstrate the integration of a linear quadrupole trap with a simple time-of-flight mass spectrometer with medium-mass resolution (m/Δm ∼ 50) geared towards the demands of atomic, molecular, and chemical physics experiments. By utilizing a novel radial ion extraction scheme from the linear quadrupole trap into the mass analyzer, a device with large trap capacity and high optical access is realized without sacrificing mass resolution. This provides the ability to address trapped ions with laser light and facilitates interactions with neutral background gases prior to analyzing the trapped ions. Here, we describe the construction and implementation of the device as well as present representative ToF spectra. We conclude by demonstrating the flexibility of the device with proof-of-principle experiments that include the observation of molecular-ion photodissociation and the measurement of trapped-ion chemical reaction rates. © 2012 American Institute of Physics

  10. Microfabricated Quadrupole Ion Trap for Mass Spectrometer Applications

    SciTech Connect

    Pau, S.; Pai, C.S.; Low, Y.L.; Moxom, J.; Reilly, P.T.A.; Whitten, W.B.; Ramsey, J.M.

    2006-03-31

    An array of miniaturized cylindrical quadrupole ion traps, with a radius of 20 {mu}m, is fabricated using silicon micromachining using phosphorus doped polysilicon and silicon dioxide for the purpose of creating a mass spectrometer on a chip. We have operated the array for mass-selective ion ejection and mass analysis using Xe ions at a pressure of 10{sup -4} Torr. The scaling rules for the ion trap in relation to operating pressure, voltage, and frequency are examined.

  11. Recent developments and proposed schemes for trapped ion frequency standards. [trapped mercury ions for microwave and optical frequency standards

    NASA Technical Reports Server (NTRS)

    Maleki, L.

    1982-01-01

    Ion traps are exciting candidates as future precision frequency sources. Recent developments demonstrate that mercury ion frequency standards are capable of a stability performance comparable to commercial cesium standards. There is, however, considerable room for improvement with regard to the signal to noise problem. The 40 GHz microwave frequency implies that a careful design should be implemented to ensure the elimination of the unwanted side bands in the microwave pump signal. A long life, high performance light source to be used in a trapped mercury ion microwave standard must be developed and the long term performance of a trapped mercury ion microwave standard must be investigated. While newly proposed two photon pumping schemes in conjuction with mercury ions promise exciting developments for both microwave and optical frequency standards, other ions that may be potential candidates should be evaluated for their usefulness.

  12. An in situ trap capacitance measurement and ion-trapping detection scheme for a Penning ion trap facility.

    PubMed

    Reza, Ashif; Banerjee, Kumardeb; Das, Parnika; Ray, Kalyankumar; Bandyopadhyay, Subhankar; Dam, Bivas

    2017-03-01

    This paper presents the design and implementation of an in situ measurement setup for the capacitance of a five electrode Penning ion trap (PIT) facility at room temperature. For implementing a high Q resonant circuit for the detection of trapped electrons/ions in a PIT, the value of the capacitance of the trap assembly is of prime importance. A tunable Colpitts oscillator followed by a unity gain buffer and a low pass filter is designed and successfully implemented for a two-fold purpose: in situ measurement of the trap capacitance when the electric and magnetic fields are turned off and also providing RF power at the desired frequency to the PIT for exciting the trapped ions and subsequent detection. The setup is tested for the in situ measurement of trap capacitance at room temperature and the results are found to comply with those obtained from measurements using a high Q parallel resonant circuit setup driven by a standard RF signal generator. The Colpitts oscillator is also tested successfully for supplying RF power to the high Q resonant circuit, which is required for the detection of trapped electrons/ions.

  13. An in situ trap capacitance measurement and ion-trapping detection scheme for a Penning ion trap facility

    NASA Astrophysics Data System (ADS)

    Reza, Ashif; Banerjee, Kumardeb; Das, Parnika; Ray, Kalyankumar; Bandyopadhyay, Subhankar; Dam, Bivas

    2017-03-01

    This paper presents the design and implementation of an in situ measurement setup for the capacitance of a five electrode Penning ion trap (PIT) facility at room temperature. For implementing a high Q resonant circuit for the detection of trapped electrons/ions in a PIT, the value of the capacitance of the trap assembly is of prime importance. A tunable Colpitts oscillator followed by a unity gain buffer and a low pass filter is designed and successfully implemented for a two-fold purpose: in situ measurement of the trap capacitance when the electric and magnetic fields are turned off and also providing RF power at the desired frequency to the PIT for exciting the trapped ions and subsequent detection. The setup is tested for the in situ measurement of trap capacitance at room temperature and the results are found to comply with those obtained from measurements using a high Q parallel resonant circuit setup driven by a standard RF signal generator. The Colpitts oscillator is also tested successfully for supplying RF power to the high Q resonant circuit, which is required for the detection of trapped electrons/ions.

  14. Differentially pumped dual linear quadrupole ion trap mass spectrometer

    DOEpatents

    Owen, Benjamin C.; Kenttamaa, Hilkka I.

    2016-11-15

    The present disclosure provides a new tandem mass spectrometer and methods of using the same for analyzing charged particles. The differentially pumped dual linear quadrupole ion trap mass spectrometer of the present disclose includes a combination of two linear quadrupole (LQIT) mass spectrometers with differentially pumped vacuum chambers.

  15. Differentially pumped dual linear quadrupole ion trap mass spectrometer

    DOEpatents

    Owen, Benjamin C.; Kenttamaa, Hilkka I.

    2015-10-20

    The present disclosure provides a new tandem mass spectrometer and methods of using the same for analyzing charged particles. The differentially pumped dual linear quadrupole ion trap mass spectrometer of the present disclose includes a combination of two linear quadrupole (LQIT) mass spectrometers with differentially pumped vacuum chambers.

  16. Trap-induced mass declines in small mammals: Mass as a population index

    Treesearch

    Dean E. Pearson; Yvette K. Ortega; Leonard F. Ruggiero

    2003-01-01

    Body mass is routinely used as an index of physical condition for comparing small-mammal populations. However, trapping effects on animals may undermine the effectiveness of body mass as an index of population health. We examined the effects of live-trapping on body mass of 3 small-mammal species: deer mice (Peromyscus maniculatus), southern red-...

  17. Infrared ion spectroscopy inside a mass-selective cryogenic 2D linear ion trap.

    PubMed

    Cismesia, Adam P; Tesler, Larry F; Bell, Matthew R; Bailey, Laura S; Polfer, Nicolas C

    2017-07-27

    We demonstrate operation of the first cryogenic 2D linear ion trap (LIT) with mass-selective capabilities. This trap presents a number of advantages for infrared ion "action" spectroscopy studies, particularly those employing the "tagging/messenger" spectroscopy approach. The high trapping efficiencies, trapping capacities, and low detection limits make 2D LITs a highly suitable choice for low-concentration analytes from scarce biological samples. In our trap, ions can be cooled down to cryogenic temperatures to achieve higher-resolution infrared spectra, and individual ions can be mass selected prior to irradiation for a background-free photodissociation scheme. Conveniently, multiple tagged analyte ions can be mass isolated and efficiently irradiated in the same experiment, allowing their infrared spectra to be recorded in parallel. This multiplexed approach is critical in terms of increasing the duty cycle of infrared ion spectroscopy, which is currently a key weakness of the technique. The compact design of this instrument, coupled with powerful mass selection capabilities, set the stage for making cryogenic infrared ion spectroscopy viable as a bioanalytical tool in small molecule identification. This article is protected by copyright. All rights reserved.

  18. Handheld miniature ion trap mass spectrometers.

    PubMed

    Ouyang, Zheng; Noll, Robert J; Cooks, R Graham

    2009-04-01

    For field applications, "miniature" and "rapid" have become almost synonymous, yet these small mass spectrometers are not useful if performance is too severely compromised. (To listen to a podcast about this feature, please go to the Analytical Chemistry website at pubs.acs.org/journal/ancham .).

  19. First Penning Trap Mass Measurements beyond the Proton Drip Line

    SciTech Connect

    Rauth, C.; Ackermann, D.; Block, M.; Herfurth, F.; Hessberger, F. P.; Kluge, H.-J.; Maero, G.; Martin, A.; Mukherjee, M.; Rahaman, S.; Blaum, K.; Ferrer, R.; Chaudhuri, A.; Marx, G.; Schweikhard, L.; Di, Z.; Plass, W. R.; Eliseev, S.; Vorobjev, G.; Habs, D.

    2008-01-11

    The masses of six neutron-deficient rare holmium and thulium isotopes close to the proton drip line were determined with the SHIPTRAP Penning trap mass spectrometer. For the first time the masses of the proton-unbound isotopes {sup 144,145}Ho and {sup 147,148}Tm were directly measured. The proton separation energies were derived from the measured mass values and compared to predictions from mass formulas. The new values of the proton separation energies are used to determine the location of the proton drip line for holmium and thulium more accurately.

  20. High-Precision Mass Measurements At TRIGA-TRAP

    NASA Astrophysics Data System (ADS)

    Smorra, C.; Beyer, T.; Blaum, K.; Block, M.; Eberhardt, K.; Eibach, M.; Herfurth, F.; Ketelaer, J.; Knuth, K.; Nörtershäuser, W.; Nagy, Sz.

    2010-04-01

    In order to study neutron-rich nuclides far from the valley of stability as well as long-lived actinoids the double Penning-trap mass spectrometer TRIGA-TRAP has been recently installed at the research reactor TRIGA Mainz. Short-lived neutron-rich fission products are produced by thermal neutron-induced fission of an actinoid target installed close to the reactor core. A helium gas-jet system with carbon aerosol particles is used to extract the fission products to the experiment. The Penning trap system has already been commissioned. Off-line mass measurements are routinely performed using a recently developed laser ablation ion source, and the gas-jet system has been tested. An overview of the experiment and current status will be given.

  1. Canadian Penning Trap Mass Measurements using a Position Sensitive MCP

    NASA Astrophysics Data System (ADS)

    Kuta, Trenton; Aprahamian, Ani; Marley, Scott; Nystrom, Andrew; Clark, Jason; Perez Galvan, Adrian; Hirsh, Tsviki; Savard, Guy; Orford, Rodney; Morgan, Graeme

    2015-10-01

    The primary focus of the Canadian Penning Trap (CPT) located at Argonne National Lab is to determine the masses of various isotopes produced in the spontaneous fission of Californium. Currently, the CPT is operating in conjunction with CARIBU at the ATLAS facility in an attempt to measure neutron-rich nuclei produced by a 1.5 Curie source of Californium 252. The masses of nuclei produced in fission is accomplished by measuring the cyclotron frequency of the isotopes circling within the trap. This frequency is determined by a position sensitive MCP, which records the relative position of the isotope in the trap at different times. Using these position changes over time in connection with a center spot, angles between these positions are calculated and used to determine the frequency. Most of the work currently being conducted on the CPT is focused on the precision of these frequency measurements. The use of traps has revolutionized the measurements of nuclear masses to very high precision. The optimization methods employed here include focusing the beam in order to reduce the spread on the position of the isotope as well as the tuning of the MR-ToF, a mass separator that is intended on removing contaminants in the beam. This work was supported by the nuclear Grant PHY-1419765 for the University of Notre Dame.

  2. High Mass Ion Detection with Charge Detector Coupled to Rectilinear Ion Trap Mass Spectrometer

    NASA Astrophysics Data System (ADS)

    Patil, Avinash A.; Chou, Szu-Wei; Chang, Pei-Yu; Lee, Chen-Wei; Cheng, Chun-Yen; Chu, Ming-Lee; Peng, Wen-Ping

    2016-12-01

    Conventional linear ion trap mass analyzers (LIT-MS) provide high ion capacity and show their MS n ability; however, the detection of high mass ions is still challenging because LIT-MS with secondary electron detectors (SED) cannot detect high mass ions. To detect high mass ions, we coupled a charge detector (CD) to a rectilinear ion trap mass spectrometer (RIT-MS). Immunoglobulin G ions (m/z 150,000) are measured successfully with controlled ion kinetic energy. In addition, when mass-to-charge (m/z) ratios of singly charged ions exceed 10 kTh, the detection efficiency of CD is found to be greater than that of SED. The CD can be coupled to LIT-MS to extend the detection mass range and provide the potential to perform MS n of high mass ions inside the ion trap.

  3. High Mass Ion Detection with Charge Detector Coupled to Rectilinear Ion Trap Mass Spectrometer

    NASA Astrophysics Data System (ADS)

    Patil, Avinash A.; Chou, Szu-Wei; Chang, Pei-Yu; Lee, Chen-Wei; Cheng, Chun-Yen; Chu, Ming-Lee; Peng, Wen-Ping

    2017-06-01

    Conventional linear ion trap mass analyzers (LIT-MS) provide high ion capacity and show their MS n ability; however, the detection of high mass ions is still challenging because LIT-MS with secondary electron detectors (SED) cannot detect high mass ions. To detect high mass ions, we coupled a charge detector (CD) to a rectilinear ion trap mass spectrometer (RIT-MS). Immunoglobulin G ions ( m/ z 150,000) are measured successfully with controlled ion kinetic energy. In addition, when mass-to-charge ( m/ z) ratios of singly charged ions exceed 10 kTh, the detection efficiency of CD is found to be greater than that of SED. The CD can be coupled to LIT-MS to extend the detection mass range and provide the potential to perform MS n of high mass ions inside the ion trap. [Figure not available: see fulltext.

  4. Accurate mass determination of short-lived isotopes by a tandem Penning-trap mass spectrometer

    SciTech Connect

    Stolzenberg, H.; Becker, S.; Bollen, G.; Kern, F.; Kluge, H.; Otto, T.; Savard, G.; Schweikhard, L. ); Audi, G. ); Moore, R.B. ); The ISOLDE Collaboration

    1990-12-17

    A mass spectrometer consisting of two Penning traps has been set up for short-lived isotopes at the on-line mass separator ISOLDE at CERN. The ion beam is collected and cooled in the first trap. After delivery to the second trap, high-accuracy direct mass measurements are made by determining the cyclotron frequency of the stored ions. Measurements have been performed for {sup 118}Cs--{sup 137}Cs. A resolving power of over 10{sup 6} and an accuracy of 1.4{times}10{sup {minus}7} have been achieved, corresponding to about 20 keV.

  5. Laser desorption in an ion trap mass spectrometer

    SciTech Connect

    Eiden, G.C.; Cisper, M.E.; Alexander, M.L.; Hemberger, P.H.; Nogar, N.S.

    1993-02-01

    Laser desorption in a ion-trap mass spectrometer shows significant promise for both qualitative and trace analysis. Several aspects of this methodology are discussed in this work. We previously demonstrated the generation of both negative and positive ions by laser desorption directly within a quadrupole ion trap. In the present work, we explore various combinations of d.c., r.f., and time-varying fields in order to optimize laser generated signals. In addition, we report on the application of this method to analyze samples containing compounds such as amines, metal complexes, carbon clusters, and polynuclear aromatic hydrocarbons. In some cases the ability to rapidly switch between positive and negative ion modes provides sufficient specificity to distinguish different compounds of a mixture with a single stage of mass spectrometry. In other experiments, we combined intensity variation studies with tandem mass spectrometry experiments and positive and negative ion detection to further enhance specificity.

  6. Recent developments in Penning-trap mass spectrometry

    NASA Astrophysics Data System (ADS)

    Block, M.

    2016-06-01

    Penning-trap mass spectrometry provides atomic masses with the highest precision. At accelerator-based on-line facilities it is applied to investigate exotic radionuclides in the context of tests of fundamental symmetries, nuclear structure studies, and nuclear astrophysics research. Recent progress in slowing down radioactive ion-beams in buffer-gas cells in combination with advanced ion-manipulation techniques has paved the way to reach nuclides ever-more far from stability. In this endeavor many efforts are underway to increase the sensitivity, the efficiency, and the precision of Penning-trap mass spectrometry. In this article some recent experimental developments are addressed with the focus on the phase-imaging ion-cyclotron-resonance technique and the Fourier transform ion-cyclotron-resonance technique.

  7. Ion trap mass spectrometry of externally generated ions

    SciTech Connect

    McLuckey, S.A.; Van Berkel, G.J.; Georinger, D.E. ); Glish, G.L.

    1994-07-01

    This discussion provides background for consideration of the merits of ion trap MS in conjunction with an external ion source relative to a scanning beam-type form of mass analysis. Emphasis has been placed primarily on efficiency. However, a variety of other factors can be major considerations, depending upon the application. For example, the ion trap has clear advantages over most other forms of MS in terms of size, weight, and pumping requirements. These advantages make the ion trap attractive for field applications, particularly because the performance characteristics of the ion trap need not be compromised in a compact system. One of the most significant advantages is the high efficiency obtainable with tandem MS experiments by using collisional activation via resonance excitation. Under favorable conditions, the conversion of 100% of the parent ions to product ions can be achieved, although 10-50% conversions are more typical. The analogous conversion in most beam-type tendem MS experiments is typically 1-3 orders of magnitude lower; thus, significant reductions in detection limits by use of the ion trap can be anticipated in analyses requiring two or more stages of MS. 61 refs., 3 figs.

  8. Direct mass measurements of the heaviest elements with Penning traps

    NASA Astrophysics Data System (ADS)

    Block, M.

    2015-12-01

    Penning-trap mass spectrometry (PTMS) is a mature technique to provide atomic masses with highest precision. Applied to radionuclides it enables us to investigate their nuclear structure via binding energies and derived quantities such as nucleon separation energies. Recent progress in slowing down radioactive ion beams in buffer gas cells in combination with advanced ion-manipulation techniques has opened the door to access even the elements above fermium by PTMS. Such elements are produced in complete fusion-evaporation reactions of heavy ions with lead, bismuth, and actinide targets at very low rates. Pioneering high-precision mass measurements of nobelium and lawrencium isotopes have been performed with SHIPTRAP at the GSI Darmstadt, Germany. These have illustrated that direct mass measurements provide reliable anchor points to pin down decay chains and that they allow mapping nuclear shell effects, the reason for the very existence of the heaviest elements. Thus, accurate masses contribute to our understanding of these exotic nuclei with extreme proton numbers. In this article experimental challenges in mass measurements of the heaviest elements with Penning traps are discussed. Some illustrative examples of the nuclear structure features displayed based on the presently known masses are given.

  9. Mass measurements on radioactive isotopes with a Penning trap mass spectrometer

    SciTech Connect

    Bollen, G.; Ames, F.; Schark, E.; Audi, G.; Lunney, D.; Saint Simon, M. de; Beck, D.; Herfurth, F.; Kluge, H.-J.; Kohl, A.; Schwarz, S.; Moore, R. B.; Szerypo, J.

    1999-01-15

    Penning trap mass measurements on short-lived isotopes are performed with the ISOLTRAP mass spectrometer at the radioactive beam facility ISOLDE/CERN. In the last years the applicability of the spectrometer has been considerably extended by the installation of an RFQ trap ion beam buncher and a new cooler Penning trap, which is operated as an isobar separator. These improvements allowed for the first time measurements on isotopes of rare earth elements and on isotopes with Z=80-85. In all cases an accuracy of {delta}m/m{approx_equal}1{center_dot}10{sup -7} was achieved.

  10. How might a statistical cloud scheme be coupled to a mass-flux convection scheme?

    SciTech Connect

    Klein, Stephen A.; Pincus, Robert; Hannay, Cecile; Xu, Kuan-man

    2004-09-27

    The coupling of statistical cloud schemes with mass-flux convection schemes is addressed. Source terms representing the impact of convection are derived within the framework of prognostic equations for the width and asymmetry of the probability distribution function of total water mixing ratio. The accuracy of these source terms is quantified by examining output from a cloud resolving model simulation of deep convection. Practical suggestions for inclusion of these source terms in large-scale models are offered.

  11. Collisional activation with random noise in ion trap mass spectrometry.

    PubMed

    McLuckey, S A; Goeringer, D E; Glish, G L

    1992-07-01

    Random noise applied to the end caps of a quadrupole ion trap is shown to be an effective means for the collisional activation of trapped ions independent of mass/charge ratio and number of ions. This technique is compared and contrasted with conventional single-frequency collisional activation for the molecular ion of N,N-dimethylaniline, protonated cocaine, the molecular anion of 2,4,6-trinitrotoluene, and doubly pronated neuromedin U-8. Collisional activation with noise tends to produce more extensive fragmentation than the conventional approach due to the fact that product ions are also kinetically excited in the noise experiment. The efficiency of the noise experiment in producing detectable product ions relative to the conventional approach ranges from being equivalent to being a factor of 3 less efficient. Furthermore, discrimination against low mass/charge product ions is apparent in the data from multiply charged biomolecules. Nevertheless, collisional activation with random noise provides a very simple means for overcoming problems associated with the dependence of single-frequency collisional activation on mass/charge ratio and the number of ions in the ion trap.

  12. Measurements of Masses with the Canadian Penning Trap

    NASA Astrophysics Data System (ADS)

    Kuta, Trenton; Nystrom, Andrew; Aprahamian, Ani; Brodeur, Maxime; Burdette, Daniel; Buchinger, Fritz; Orford, Rodney; Clark, Jason; Hirsh, Tsviki; Ling-Ying, Lin; Savard, Guy; Burkey, Mary; Klimes, Jeffery; Dwaipayan, Ray; Sharma, Kumar; Morgan, Graeme

    2016-09-01

    The primary focus of the Canadian Penning Trap (CPT) located at Argonne National Laboratory is to determine the masses of various isotopes relevant to the rprocess, an astrophysical process thought to be responsible for the creation of half the elements heavier than iron. Currently, the CPT is operating in conjunction with the CAlifornium Rare Isotope Breeder Upgrade (CARIBU) at Argonne National Laboratory's ATLAS facility in an attempt to measure neutron-rich nuclei produced by a 1.0 Curie source of 252Cf. The mass measurements of these nuclei are accomplished by measuring the cyclotron frequency of the isotopes captured in the trap. This frequency is measured with a position-sensitive microchannel plate (MCP), which records the relative position of the isotope in the trap for different phase accumulation times. This summer, the CPT group was able to successfully measure to a precision of 10 keV/c2 the masses of 142I and 156 , 158 , 159Nd, which are key nuclei needed to more accurately model the rprocess. This also marks the first time that any of these nuclei had ever been measured. This work was supported by the National Science Foundation under Contract PHY-1205412, the University of Notre Dame, and the U.S. Department of Energy, Office of Nuclear Physics, under Contract No. DE-AC02-06CH11357.

  13. Collisional activation with random noise in ion trap mass spectrometry

    SciTech Connect

    McLuckey, S.A.; Goeringer, D.E.; Glish, G.L.

    1992-07-01

    Random noise applied to the end caps of a quadrupole ion trap is shown to be an effective means for the collisional activation of trapped ions independent of mass/charge ratio and number of ions. This technique is compared and contrasted with conventional single-frequency collisional activation for the molecular ion of N,N-dimethylaniline, protonated cocaine, the molecular anion of 2,4,6-trinitrotoluene, and doubly protonated neuromedin U-8. Collisional activation with noise tends to produce more extensive fragmentation than the conventional approach due to the fact that product ions are also kinetically excited in the noise experiment. The efficiency of the noise experiment in producing detectable product ions relative to the conventional approach ranges from being equivalent to being a factor of 3 less efficient. Furthermore, discrimination against low mass/charge product ions is apparent in the data from multiply charged biomolecules. Nevertheless, collisional activation with random noise provides a very simple means for overcoming problems associated with the dependence of single-frequency collisional activation on mass/charge ratio and the number of ions in the ion trap. 45 refs., 7 figs.

  14. Electrostatic ion trap and Fourier transform measurements for high-resolution mass spectrometry.

    PubMed

    Bhushan, K G; Gadkari, S C; Yakhmi, J V; Sahni, V C

    2007-08-01

    We report on the development of an electrostatic ion trap for high-resolution mass spectrometry. The trap works on purely electrostatic fields and hence trapping and storing of ions is not mass restrictive, unlike other techniques based on Penning, Paul, or radio frequency quadrupole ion traps. It allows simultaneous trapping and studying of multiple mass species over a large mass range. Mass spectra were recorded in "dispersive" and "self-bunching" modes of ions. Storage lifetimes of about 100 ms and mass resolving power of about 20,000 could be achieved from the fifth harmonic Fourier transform spectrum of Xe ions recorded in the self-bunching mode.

  15. Coulomb crystal mass spectrometry in a digital ion trap

    NASA Astrophysics Data System (ADS)

    Deb, Nabanita; Pollum, Laura L.; Smith, Alexander D.; Keller, Matthias; Rennick, Christopher J.; Heazlewood, Brianna R.; Softley, Timothy P.

    2015-03-01

    We present a mass spectrometric technique for identifying the masses and relative abundances of Coulomb-crystallized ions held in a linear Paul trap. A digital radio-frequency wave form is employed to generate the trapping potential, as this can be cleanly switched off, and static dipolar fields are subsequently applied to the trap electrodes for ion ejection. Close to 100% detection efficiency is demonstrated for Ca+ and CaF+ ions from bicomponent Ca+-CaF+ Coulomb crystals prepared by the reaction of Ca+ with CH3F . A quantitative linear relationship is observed between ion number and the corresponding integrated time-of-flight (TOF) peak, independent of the ionic species. The technique is applicable to a diverse range of multicomponent Coulomb crystals—demonstrated here for Ca+-NH 3+ -NH 4+ and Ca+-CaOH +-CaOD + crystals—and will facilitate the measurement of ion-molecule reaction rates and branching ratios in complicated reaction systems.

  16. Laser desorption lamp ionization source for ion trap mass spectrometry.

    PubMed

    Wu, Qinghao; Zare, Richard N

    2015-01-01

    A two-step laser desorption lamp ionization source coupled to an ion trap mass spectrometer (LDLI-ITMS) has been constructed and characterized. The pulsed infrared (IR) output of an Nd:YAG laser (1064 nm) is directed to a target inside a chamber evacuated to ~15 Pa causing desorption of molecules from the target's surface. The desorbed molecules are ionized by a vacuum ultraviolet (VUV) lamp (filled with xenon, major wavelength at 148 nm). The resulting ions are stored and detected in a three-dimensional quadrupole ion trap modified from a Finnigan Mat LCQ mass spectrometer operated at a pressure of ≥ 0.004 Pa. The limit of detection for desorbed coronene molecules is 1.5 pmol, which is about two orders of magnitude more sensitive than laser desorption laser ionization mass spectrometry using a fluorine excimer laser (157 nm) as the ionization source. The mass spectrum of four standard aromatic compounds (pyrene, coronene, rubrene and 1,4,8,11,15,18,22,25-octabutoxy-29H,31H-phthalocyanine (OPC)) shows that parent ions dominate. By increasing the infrared laser power, this instrument is capable of detecting inorganic compounds. Copyright © 2015 John Wiley & Sons, Ltd.

  17. Resonant laser ablation ion trap mass spectrometry -- Recent applications for chemical analysis

    SciTech Connect

    Gill, C.G.; Garrett, A.W.; Hemberger, P.H.; Nogar, N.S.

    1995-12-31

    Resonant Laser Ablation (RLA) is a useful ionization process for selectively producing gas phase ions from a solid sample. Recent use of RLA for mass spectrometry by this group and by others has produced a wealth of knowledge and useful analytical techniques. The method relies upon the focusing of modest intensity laser pulses ({le} 10{sup 7} W {center_dot} Cm{sup {minus}2}) upon a sample surface. A small quantity of material is vaporized, and atoms of desired analyte are subsequently ionized by (n + m) photon processes in the gas phase (where n = number of photons to a resonant transition and m = number of photons to exceed the ionization limit). The authors have been using (2 + 1) resonant ionization schemes for this work. Quadrupole ion trap mass spectrometry is realizing a very prominent role in current mass spectrometric research. Ion traps are versatile, powerful and extremely sensitive mass spectrometers, capable of a variety of ionization modes, MS{sup n} type experiments, high mass ranges and high resolution, all for a fraction of the cost of other instrumentation with similar capabilities. Quadrupole ion traps are ideally suited to pulsed ionization sources such as laser ionization methods, since their normal operational method (Mass Selective Instability) relies upon the storage of ions from a finite ionization period followed by ejection and detection of these ions based upon their mass to charge ratios. The paper describes selective ionization for trace atomic analysis, selective reagent ion source for ion chemistry investigations, and the analysis of ``difficult`` environmental contaminants, i.e., TBP.

  18. Multiple Mass Analysis Using an Ion Trap Array (ITA) Mass Analyzer

    NASA Astrophysics Data System (ADS)

    Xiao, Yu; Chu, Yanqiu; Ling, Xing; Ding, Zhengzhi; Xu, Chongsheng; Ding, Li; Ding, Chuan-Fan

    2013-09-01

    A novel ion trap array (ITA) mass analyzer with six ion trapping and analyzing channels was investigated. It is capable of analyzing multiple samples simultaneously. The ITA was built with several planar electrodes made of stainless steel and 12 identical parallel zirconia ceramic substrates plated with conductive metal layers. Each two of the opposing ceramic electrode plates formed a boundary of an ion trap channel and six identical ion trapping and analyzing channels were placed in parallel without physical electrode between any two adjacent channels. The electric field distribution inside each channel was studied with simulation. The new design took the advantage of high precision machining attributable to the rigidity of ceramic, and the convenience of surface patterning technique. The ITA system was tested by using a two-channel electrospray ionization source, a multichannel simultaneous quadruple ion guide, and two detectors. The simultaneous analysis of two different samples with two adjacent ITA channels was achieved and independent mass spectra were obtained. For each channel, the mass resolution was tested. Additional ion trap functions such as mass-selected ion isolation and collision-induced dissociation (CID) were also tested. The results show that one ITA is well suited for multiple simultaneous mass analyses.

  19. Complex-mass scheme and resonances in EFT

    NASA Astrophysics Data System (ADS)

    Bauer, T.; Djukanovic, D.; Gegelia, J.; Scherer, S.; Tiator, L.

    2012-04-01

    The complex-mass scheme (CMS) provides a consistent framework for dealing with unstable particles in quantum field theory and has been successfully applied to various loop calculations. As applications of the CMS in chiral effective field theory we consider the form factor of the pion in the time-like region and the magnetic moment of the Roper resonance.

  20. Mass-imbalanced fermionic mixture in a harmonic trap

    NASA Astrophysics Data System (ADS)

    Bazak, B.

    2017-08-01

    The mass-imbalanced fermionic mixture is studied, where N ≤5 identical fermions interact resonantly with an impurity, a distinguishable atom. The shell structure is explored, and the physics of a dynamic light-impurity is shown to be different from that of the static heavy-impurity case. The energies in a harmonic trap at unitarity are calculated and extrapolated to the zero-range limit. In doing so, the scale factor of the ground state, as well as of a few excited states, is calculated. In the 2 ≤N ≤4 systems, pure (N +1 ) Efimov states exist for large enough mass ratio. However, no sign for a six-body Efimov state in the (5 +1 ) system is found in the mass ratio explored, M /m ≤12 .

  1. High-precision masses of neutron-deficient rubidium isotopes using a Penning trap mass spectrometer

    SciTech Connect

    Kellerbauer, A.; Audi, G.; Guenaut, C.; Lunney, D.; Beck, D.; Herfurth, F.; Kluge, H.-J.; Weber, C.; Yazidjian, C.; Blaum, K.; Bollen, G.; Schwarz, S.; Herlert, A.; Schweikhard, L.

    2007-10-15

    The atomic masses of the neutron-deficient radioactive rubidium isotopes {sup 74-77,79,80,83}Rb have been measured with the Penning trap mass spectrometer ISOLTRAP. Using the time-of-flight cyclotron resonance technique, relative mass uncertainties ranging from 1.6x10{sup -8} to 5.6x10{sup -8} were achieved. In all cases, the mass precision was significantly improved as compared with the prior Atomic-Mass Evaluation; no significant deviations from the literature values were observed. The exotic nuclide {sup 74}Rb, with a half-life of only 65 ms, is the shortest-lived nuclide on which a high-precision mass measurement in a Penning trap has been carried out. The significance of these measurements for a check of the conserved-vector-current hypothesis of the weak interaction and the unitarity of the Cabibbo-Kobayashi-Maskawa matrix is discussed.

  2. Precision Penning Trap Mass Spectrometry of S, Kr and Xe

    NASA Astrophysics Data System (ADS)

    Redshaw, Matthew

    2005-04-01

    Using a phase coherent technique to measure the cyclotron frequency of single ions in a Penning trap [1], we have performed mass measurements on ^32S and the two most abundant krypton and xenon isotopes ^84Kr, ^86Kr, ^ 129Xe and ^132Xe, to relative precisions of 0.1 ppb. This is a factor of ˜10-100 improvement in precision over current values [2]. [1] M.P. Bradley, J.V. Porto, S. Rainville, J.K. Thompson, and D.E. Pritchard, PRL 83, 4510 (1999). [2] G. Audi, A.H. Wapstra, and C. Thibault, Nucl Phys A729, 337 (2003).

  3. Phase-imaging Mass Measurements with the Canadian Penning Trap Mass Spectrometer

    NASA Astrophysics Data System (ADS)

    Orford, Rodney; Clark, Jason A.; Nystrom, Andrew; Savard, Guy; Aprahamian, Ani; Brodeur, Maxime; Buchinger, Fritz; Burdette, Daniel; Burkey, Mary T.; Hirsh, Tsviki Y.; Kelly, James; Lascar, Daniel; Ling-Ying, Lin; Morgan, Graeme E.; Sharma, Kumar S.; Siegl, Kevin

    The Canadian Penning trap mass spectrometer (CPT) is currently dedicated to making precision mass measurements of neutron-rich nuclei approaching the astrophysical r-process path. Over the past two years, upgrades to CARIBU and to the detector system of the CPT have been made in order to probe shorter-lived nuclei further from stability. The installation of the MR-TOF and the commissioning of the modern phase-imaging mass measurement technique at the CPT are reported.

  4. Mass Measurements with the Canadian Penning Trap at CARIBU

    NASA Astrophysics Data System (ADS)

    Orford, Rodney

    2017-01-01

    Roughly half of the elements heavier than iron are thought to be produced through the astrophysical r process of nucleosynthesis. Despite its large influence in explaining the observed abundance of heavy elements, much of the r process is still poorly understood. A more thorough library of nuclear data of neutron-rich nuclei is needed to improve the accuracy and progression of r-process calculations. In particular, accurate mass measurements are in demand due to the strong coupling between mass and other nuclear properties such as β-decay and neutron-capture rates. For nearly three decades, direct mass measurements conducted by Penning trap mass spectrometers have proven to be an accurate method of determining masses to a precision suitable for r-process calculations (Δm / m <10-7). The Canadian Penning trap mass spectrometer (CPT) is currently located in the CARIBU facility at Argonne National Laboratory where intense radioactive beams of neutron-rich nuclei are produced from the spontaneous fission of 252Cf. Since moving into CARIBU the CPT has successfully measured the masses of more than 110 isotopes to a typical precision of 15 keV/c2. In order to push measurements to nuclides further from stability which may play a part in the r process, a number of upgrades to both the CPT and CARIBU have been made. A Multi-Reflection Time-Of-Flight (MR-TOF) mass separator has been added to the CARIBU beamline providing cleaner beams to low-energy experiments, and at the CPT a position-sensitive multichannel plate detector has been installed to facilitate a contemporary phase-imaging mass measurement technique. This technique allows for faster measurements with fewer ions and provides more than an order of magnitude improvement in mass resolving power without loss in precision. These upgrades, alongside recent measurements of neutron-rich rare-earth isotopes will be discussed. This work was supported by NSERC Canada. This research used resources of ANL's ATLAS facility

  5. A hand-portable digital linear ion trap mass spectrometer.

    PubMed

    Xue, Bing; Sun, Lulu; Huang, Zhengxu; Gao, Wei; Fan, Rongrong; Cheng, Ping; Ding, Li; Ma, Li; Zhou, Zhen

    2016-10-07

    A hand-portable digital linear ion trap mass spectrometer (DLIT-MS) has been developed for VOC analysis. It has a weight of 18 kg with dimensions of 49 cm × 39 cm × 16 cm, and consumes an average power of ca. 60 W. As a result of the introduction of a digital waveform, the DLIT-MS can be driven at a lower voltage (±100 V) to cover a mass range of 30-300 Th with a unit resolution. Compact electronics has been designed to control the DLIT-MS and record mass spectra. The mass drift was reduced after the improvement in electronics to stabilize the digital waveform voltage during the mass scan. Tandem mass spectrometry (MS) has been achieved by using digital asymmetric waveform isolation (DAWI), forward and reverse scan, and collision induced dissociation (CID). The isolation and CID efficiency for methyl salicylate were 83.9% and 81.3%, respectively. A novel buffer gas inlet system was designed to enhance the sensitivity and allow easy and safe use of the instrument. Limits of detection below 1 ppbv were obtained for several mixed gaseous samples.

  6. Implementation of electron-transfer dissociation on a hybrid linear ion trap-orbitrap mass spectrometer.

    PubMed

    McAlister, Graeme C; Phanstiel, Doug; Good, David M; Berggren, W Travis; Coon, Joshua J

    2007-05-15

    We describe the adaptation of a hybrid quadrupole linear ion trap-orbitrap mass spectrometer to accommodate electron-transfer ion/ion reactions (ETD) for peptide and protein characterization. The method utilizes pulsed, dual electrospray ion sources and requires minimal instrument modification. Switching between cation and reagent anion injection schemes is automated and accomplished within a few hundred milliseconds. Ion/ion reactions are conducted within the linear ion trap, after which the c- and z-type product ions are passed to the orbitrap for high-resolution m/z analysis. With this arrangement, mass accuracies are typically measured to within 2 ppm at a resolving power of approximately 60 000. Using large peptides and intact proteins, we demonstrate such capabilities will accelerate our ability to interrogate high-mass species. To illustrate compatibility with automated data-dependent analysis and subsequent data processing, we couple the technique with an online chromatographic separation of a yeast whole-cell lysate followed by peptide identification using ProSight PC. Fairly long pulsing times and relatively low ET efficiency, as compared to conventional ETD instrumentation, are the main drawbacks of this approach. Still, our results suggest that the implementation of ETD on sensitive, high-resolution, and high-mass accuracy hybrid instrumentation, such as the orbitrap, will substantially propel the emergent fields of middle- and top-down proteomics.

  7. First Use of High Charge States for Mass Measurements of Short-Lived Nuclides in a Penning Trap

    SciTech Connect

    Ettenauer, S.; Gallant, A. T.; Dilling, J.; Simon, M. C.; Chaudhuri, A.; Mane, E.; Delheij, P.; Pearson, M. R.; Brunner, T.; Chowdhury, U.; Simon, V. V.; Brodeur, M.; Andreoiu, C.; Audi, G.; Lopez-Urrutia, J. R. Crespo; Ullrich, J.; Gwinner, G.; Lapierre, A.; Lunney, D.; Ringle, R.

    2011-12-30

    Penning trap mass measurements of short-lived nuclides have been performed for the first time with highly charged ions, using the TITAN facility at TRIUMF. Compared to singly charged ions, this provides an improvement in experimental precision that scales with the charge state q. Neutron-deficient Rb isotopes have been charge bred in an electron beam ion trap to q=8-12+ prior to injection into the Penning trap. In combination with the Ramsey excitation scheme, this unique setup creating low energy, highly charged ions at a radioactive beam facility opens the door to unrivaled precision with gains of 1-2 orders of magnitude. The method is particularly suited for short-lived nuclides such as the superallowed {beta} emitter {sup 74}Rb (T{sub 1/2}=65 ms). The determination of its atomic mass and an improved Q{sub EC} value are presented.

  8. Efficacy of pheromone trapping of the sweetpotato weevil (Coleoptera: Brentidae): based on dose, septum age, attractive radius, and mass trapping.

    PubMed

    Reddy, Gadi V P; Wu, Shaohui; Mendi, Robert C; Miller, Ross H

    2014-06-01

    Pheromone dose, effective trapping distance, and longevity of the rubber septa loaded with sex pheromone of Cylas formicarius (F.) (Coleoptera: Brentidae) were evaluated for their impact on the efficacy of mass trapping of the insect in sweet potato fields in Guam in 2012-2013. The number of adults caught at different distances (10-100 m) was significantly different. Catches declined with increasing release distance from the trap in both downwind and upwind directions. While the maximum radius of attraction of pheromone-baited trap for C. formicarius in the field was 80 m, the effective distance for recapturing marked adults in the pheromone-baited Unitraps was 60 m. Pheromone lures were able to capture adults of C. formicarius after being stored in the laboratory for up to 98 d. The number of catches per trap per week was highest when lures were 0-14- and 15-28-d-old, and longer storage of septa led to a progressive reduction of catches. Pheromone traps baited with 100-μg lures captured significantly more adults compared with those loaded with 10-μg lures. In addition, effectiveness of pheromone trapping on damage to sweet potato was tested at two locations. Number of trapped adults, damage level at different times after trap installation, and yield production were evaluated. The number of C. formicarius adults collected in traps at both locations fluctuated dramatically among sampling dates and peaked on 13 September 2013, after which time the number of captures noticeably declined. This decrease was correlated to the increasing age and depletion of the pheromone lures. Pheromone traps significantly reduced feeding damage caused by weevils (<1 feeding hole per root in treatment; up to 38 feeding holes per root in the control) at both locations. Being consistent with damage levels, sweet potato yields in fields with traps were higher than those in untreated controls. We conclude that pheromone-baited traps are effective in reducing damage due to C. formicarius.

  9. A comb-sampling method for enhanced mass analysis in linear electrostatic ion traps

    SciTech Connect

    Greenwood, J. B.; Kelly, O.; Calvert, C. R.; Duffy, M. J.; King, R. B.; Belshaw, L.; Graham, L.; Alexander, J. D.; Williams, I. D.; Bryan, W. A.; Turcu, I. C. E.; Cacho, C. M.; Springate, E.

    2011-04-15

    In this paper an algorithm for extracting spectral information from signals containing a series of narrow periodic impulses is presented. Such signals can typically be acquired by pickup detectors from the image-charge of ion bunches oscillating in a linear electrostatic ion trap, where frequency analysis provides a scheme for high-resolution mass spectrometry. To provide an improved technique for such frequency analysis, we introduce the CHIMERA algorithm (Comb-sampling for High-resolution IMpulse-train frequency ExtRAaction). This algorithm utilizes a comb function to generate frequency coefficients, rather than using sinusoids via a Fourier transform, since the comb provides a superior match to the data. This new technique is developed theoretically, applied to synthetic data, and then used to perform high resolution mass spectrometry on real data from an ion trap. If the ions are generated at a localized point in time and space, and the data is simultaneously acquired with multiple pickup rings, the method is shown to be a significant improvement on Fourier analysis. The mass spectra generated typically have an order of magnitude higher resolution compared with that obtained from fundamental Fourier frequencies, and are absent of large contributions from harmonic frequency components.

  10. Gated Trapped Ion Mobility Spectrometry Coupled to Fourier Transform Ion Cyclotron Resonance Mass Spectrometry.

    PubMed

    Ridgeway, Mark E; Wolff, Jeremy J; Silveira, Joshua A; Lin, Cheng; Costello, Catherine E; Park, Melvin A

    2016-09-01

    Analysis of molecules by ion mobility spectrometry coupled with mass spectrometry (IMS-MS) provides chemical information on the three dimensional structure and mass of the molecules. The coupling of ion mobility to trapping mass spectrometers has historically been challenging due to the large differences in analysis time between the two devices. In this paper we present a modification of the trapped ion mobility (TIMS) analysis scheme termed "Gated TIMS" that allows efficient coupling to a Fourier Transform Ion Cyclotron Resonance (FT-ICR) analyzer. Analyses of standard compounds and the influence of source conditions on the TIMS distributions produced by ion mobility spectra of labile ubiquitin protein ions are presented. Ion mobility resolving powers up to 100 are observed. Measured collisional cross sections of ubiquitin ions are in excellent qualitative and quantitative agreement to previous measurements. Gated TIMS FT-ICR produces results comparable to those acquired using TIMS/time-of-flight MS instrument platforms as well as numerous drift tube IMS-MS studies published in the literature.

  11. Fundamental studies of ion injection and trapping of electrosprayed ions on a quadrupole ion trap mass spectrometer

    NASA Astrophysics Data System (ADS)

    Quarmby, Scott Thomas

    The quadrupole ion trap is a highly versatile and sensitive analytical mass spectrometer. Because of the advantages offered by the ion trap, there has been intense interest in coupling it to ionization techniques such as electrospray which form ions externally to the ion trap. In this work, experiments and computer simulations were employed to study the injection of electrosprayed ions into the ion trap of a Finnigan MAT LCQ LC/MS n mass spectrometer. The kinetic energy distribution of the ion beam was characterized and found to be relatively wide, a result of the high pressures from the atmospheric pressure source. One of the most important experimental parameters which affects ion injection efficiency is the RF voltage applied to the ring electrode. A theoretical model was fit to experimental data allowing the optimum RF voltage for trapping a given m/z ion to be predicted. Computer simulations of ion motion were performed to study the effect of various instrumental parameters on trapping efficiency. A commercially available ion optics program, SIMION v6.0, was chosen because it allowed the actual ion trap electrode geometry including endcap holes to be simulated. In contrast to previous computer simulations, SIMION provided the ability to start ions outside the ion trap and to simulate more accurately the injection of externally formed ions. The endcap holes were found to allow the RF field to penetrate out of the ion trap and affect ions as they approached the ion trap. From these simulations, a model for the process by which injected ions are trapped was developed. Using these computer simulations, techniques of improving trapping efficiency were investigated. Most previous techniques perturb ions which are already in the ion trap and therefore cannot be used to accumulate ions; the ability to accumulate ions is a necessity with ionization sources such as electrospray which form ions continuously. One such novel technique for improving trapping efficiency

  12. "Fast Excitation" CID in Quadrupole Ion Trap Mass Spectrometer

    SciTech Connect

    Murrell, J.; Despeyroux, D.; Lammert, Stephen {Steve} A; Stephenson Jr, James {Jim} L; Goeringer, Doug

    2003-01-01

    Collision-induced dissociation (CID) in a quadrupole ion trap mass spectrometer is usually performed by applying a small amplitude excitation voltage at the same secular frequency as the ion of interest. Here we disclose studies examining the use of large amplitude voltage excitations (applied for short periods of time) to cause fragmentation of the ions of interest. This process has been examined using leucine enkephalin as the model compound and the motion of the ions within the ion trap simulated using ITSIM. The resulting fragmentation information obtained is identical with that observed by conventional resonance excitation CID. ''Fast excitation'' CID deposits (as determined by the intensity ratio of the a{sub 4}/b{sub 4} ion of leucine enkephalin) approximately the same amount of internal energy into an ion as conventional resonance excitation CID where the excitation signal is applied for much longer periods of time. The major difference between the two excitation techniques is the higher rate of excitation (gain in kinetic energy) between successive collisions with helium atoms with ''fast excitation'' CID as opposed to the conventional resonance excitation CID. With conventional resonance excitation CID ions fragment while the excitation voltage is still being applied whereas for ''fast excitation'' CID a higher proportion of the ions fragment in the ion cooling time following the excitation pulse. The fragmentation of the (M + 17H){sup 17+} of horse heart myoglobin is also shown to illustrate the application of ''fast excitation'' CID to proteins.

  13. Monitoring Trace Contaminants in Air Via Ion Trap Mass Spectrometry

    NASA Technical Reports Server (NTRS)

    Palmer, Peter T.; Karr, Dane; Pearson, Richard; Valero, Gustavo; Wong, Carla

    1995-01-01

    Recent passage of the Clean Air Act with its stricter regulation of toxic gas emissions, and the ever-growing number of applications which require faster turnaround times between sampling and analysis are two major factors which are helping to drive the development of new instrument technologies for in-situ, on-line, real-time monitoring. The ion trap, with its small size, excellent sensitivity, and tandem mass spectrometry capability is a rapidly evolving technology which is well-suited for these applications. In this paper, we describe the use of a commercial ion trap instrument for monitoring trace levels of chlorofluorocarbons (CFCs) and volatile organic compounds (VOCs) in air. A number of sample introduction devices including a direct transfer line interface, short column GC, and a cryotrapping interface are employed to achieve increasing levels of sensitivity. MS, MS/MS, and MS/MS/MS methods are compared to illustrate trade-offs between sensitivity and selectivity. Filtered Noise Field (FNF) technology is found to be an excellent means for achieving lower detection limits through selective storage of the ion(s) of interest during ionization. Figures of merit including typical sample sizes, detection limits, and response times are provided. The results indicate the potential of these techniques for atmospheric assessments, the High Speed Research Program, and advanced life support monitoring applications for NASA.

  14. Monitoring Trace Contaminants in Air Via Ion Trap Mass Spectrometry

    NASA Technical Reports Server (NTRS)

    Palmer, Peter T.; Karr, Dane; Pearson, Richard; Valero, Gustavo; Wong, Carla

    1995-01-01

    Recent passage of the Clean Air Act with its stricter regulation of toxic gas emissions, and the ever-growing number of applications which require faster turnaround times between sampling and analysis are two major factors which are helping to drive the development of new instrument technologies for in-situ, on-line, real-time monitoring. The ion trap, with its small size, excellent sensitivity, and tandem mass spectrometry capability is a rapidly evolving technology which is well-suited for these applications. In this paper, we describe the use of a commercial ion trap instrument for monitoring trace levels of chlorofluorocarbons (CFCs) and volatile organic compounds (VOCs) in air. A number of sample introduction devices including a direct transfer line interface, short column GC, and a cryotrapping interface are employed to achieve increasing levels of sensitivity. MS, MS/MS, and MS/MS/MS methods are compared to illustrate trade-offs between sensitivity and selectivity. Filtered Noise Field (FNF) technology is found to be an excellent means for achieving lower detection limits through selective storage of the ion(s) of interest during ionization. Figures of merit including typical sample sizes, detection limits, and response times are provided. The results indicate the potential of these techniques for atmospheric assessments, the High Speed Research Program, and advanced life support monitoring applications for NASA.

  15. Masses of doubly charmed baryons in the extended on-mass-shell renormalization scheme

    NASA Astrophysics Data System (ADS)

    Sun, Zhi-Feng; Vacas, M. J. Vicente

    2016-05-01

    In this work, we investigate the mass corrections of the doubly charmed baryons up to N2L O in the extended-on-mass-shell (EOMS) renormalization scheme, comparing with the results of heavy baryon chiral perturbation theory. We find that the terms from the heavy baryon approach are a subset of those obtained in the EOMS scheme. By fitting the lattice data, we can determine the parameters m ˜, α , c1 and c7 from the Lagrangian, while in the heavy baryon approach no information on c1 can be obtained from the baryons mass. Correspondingly, the masses of mΞcc and mΩcc are predicted, in the EOMS scheme, extrapolating the results from different values of the charm quark and the pion masses of the lattice QCD calculations.

  16. Mass measurements on stable nuclides in the rare-earth region with the Penning-trap mass spectrometer TRIGA-TRAP

    SciTech Connect

    Ketelaer, J.; Audi, G.; Beyer, T.; Blaum, K.; Block, M.; Dworschak, M.; Herfurth, F.; Cakirli, R. B.; Casten, R. F.; Droese, C.; Eberhardt, K.; Eibach, M.; Smorra, C.; Minaya Ramirez, E.; Nagy, Sz.; Neidherr, D.; Noertershaeuser, W.; Wang, M.

    2011-07-15

    The masses of 15 stable nuclides in the rare-earth region have been measured with the Penning-trap mass spectrometer TRIGA-TRAP. This is the first series of absolute mass measurements linking these nuclides to the atomic-mass standard {sup 12}C. Previously, nuclear reaction studies almost exclusively determined the literature values of these masses in the Atomic-Mass Evaluation. The TRIGA-TRAP results show deviations on the order of 3-4 standard deviations from the latest published values of the Atomic-Mass Evaluation 2003 for some cases. However, the binding-energy differences that are important for nuclear structure studies have been confirmed and improved. The new masses are discussed in the context of valence proton-neutron interactions using double differences of binding energies, {delta}V{sub pn}(Z,N).

  17. Monitoring and mass-trapping methodologies using pheromones: the lesser date moth Batrachedra amydraula.

    PubMed

    Levi-Zada, A; Sadowsky, A; Dobrinin, S; Ticuchinski, T; David, M; Fefer, D; Dunkelblum, E; Byers, J A

    2017-05-11

    The lesser date moth (LDM) Batrachedra amydraula is a significant pest of date palm fruits. Previously, detection and monitoring of the pest was inaccurate due to high costs of sampling with lifting machines. We report a practical system for detection and monitoring of LDM based on pheromone traps and relevant models. Dose-response experiments with LDM pheromone traps indicated a 1 mg lure is optimal for monitoring. Delta traps with adhesive covering their entire inner surface gave the highest captures while trap colour was unimportant. Sampling pheromone traps throughout the night indicated male flight began at 1:00-2:00 and reached a peak 2 h before sunrise. Monitoring traps exposed all year long in Israel revealed three generations with different abundance. Trapping transects in a date plantation indicated interference from a monitoring trap became minimal at distances >27 m away. Inter-trap distances closer than this may lower efficiency of monitoring and mass trapping in control programs. Our estimate of the circular effective attraction radius (EARc) of a 1 mg delta trap for LDM (3.43 m) shows this bait is among the most attractive compared with baits for other insects. We developed encounter-rate equations with the pheromone trap EARc to model the interplay between population levels, trap density and captures that are useful for detection of invasive LDM and its control by mass trapping. The integrated methodologies are applicable to many pest species.

  18. Computerized scheme for assessing ultrasonographic features of breast masses.

    PubMed

    Kim, Kwang Gi; Cho, Seong Whi; Min, Seon Jung; Kim, Jong Hyo; Min, Byoung Goo; Bae, Kyongtae T

    2005-01-01

    To evaluate the ultrasonographic features of breast masses using a computerized scheme and to correlate the feature values with radiologists' grading. One hundred and seventy-five breast ultrasound images (one to five images per subject) from 61 women (age 17-89 years, mean 43 years) were studied. Thirty-eight of the 157 images were from 11 women with malignant lesions, and the remaining 137 were from 50 patients with benign lesions. Two breast imaging radiologists participated in an observer performance study and were asked to grade, on a scale of 3, shape (1: regular, 3: very irregular), border (1: sharp, 3: ill-defined), internal texture (1: homogeneous, 3: very heterogeneous), width/depth ratio (1: flat, 3: tall), posterior enhancement (1: strong, 3: none), and lateral shadowing (1: strong, 3: none). The computerized scheme analyzed the breast region within a region of interest that was placed by a radiologist and quantified the following parameters: shape (jag count, disperse, convex hull depth, and lobulation count), border (acutance, average maximum ascending gradient, and sigmoid curve fitting), texture (edge density, co-occurrence matrix, and fractal dimension), width-depth ratio, posterior enhancement, and lateral shadowing. Correlations between the radiologists and the computerized scheme for assessing parameters in corresponding categories were computed. Good agreement was seen in posterior enhancement (P < .001, r = 0.45), lateral shadowing (P < .001, r = 0.38), width-depth ratio (P < .001, r = 0.33), and shape features (all P < .001): jag count (r = 0.38), disperseness (r = 0.55), and convex hull depth (r = 0.44). The remaining parameters demonstrated a poor or weak correlation (r < 0.30). The radiologists and the computerized scheme correlated best in analysis of shape features and posterior enhancement. We have yet to determine the significance of these features for the implementation of a computer-aided diagnosis program for characterizing breast

  19. A "screened" electrostatic ion trap for enhanced mass resolution, mass accuracy, reproducibility, and upper mass limit in Fourier transform ion cyclotron resonance mass spectrometry.

    PubMed

    Wang, M; Marshall, A G

    1989-06-01

    Until now, it was thought that the optimal static electromagnetic ion trap for Fourier transform ion cyclotron resonance (FT-ICR) mass spectrometry should be designed to produce a quadrupolar electrical potential, for which the ion cyclotron frequency is independent of the ion's preexcitation location within the trap. However, a quadrupolar potential results in a transverse (to the magnetic field) electric field that increases linearly with distance from the center of the trap. That radially linear electric field shifts the observed ICR frequency, increases the ICR orbital radius, and ultimately limits the highest mass-to-charge ratio ion that can be contained within the trap. In this paper, we propose a new static electromagnetic ion "trap" in which grounded screens placed just inside the usual "trapping" plates produce a good approximation to a "particle-in-a-box" potential (rather than the quadrupolar "harmonic oscillator" potential). SIMION calculations confirm that the electric potential of the screened trap is near zero almost everywhere within the trap. For our screened orthorhombic (2.5 in. X 2 in. X 2 in.) trap, the experimental ICR frequency shift due to trapping voltage is reduced by a factor of approximately 100, and the experimental variation of ICR frequency with ICR radius is reduced by a factor of approximately 10 compared to a conventional (unscreened) 2-in. cubic ion trap.(ABSTRACT TRUNCATED AT 250 WORDS)

  20. Extending Penning trap mass measurements with SHIPTRAP to the heaviest elements

    SciTech Connect

    Block, M.; Ackermann, D.; Herfurth, F.; Hofmann, S.; Blaum, K.; Droese, C.; Marx, G.; Schweikhard, L.; Duellmann, Ch. E.; Eibach, M.; Eliseev, S.; Haettner, E.; Plass, W. R.; Scheidenberger, C.; Hessberger, F. P.; Ramirez, E. Minaya; Nesterenko, D.; and others

    2013-03-19

    Penning-trap mass spectrometry of radionuclides provides accurate mass values and absolute binding energies. Such mass measurements are sensitive indicators of the nuclear structure evolution far away from stability. Recently, direct mass measurements have been extended to the heavy elements nobelium (Z=102) and lawrencium (Z=103) with the Penning-trap mass spectrometer SHIPTRAP. The results probe nuclear shell effects at N=152. New developments will pave the way to access even heavier nuclides.

  1. Extending Penning trap mass measurements with SHIPTRAP to the heaviest elements

    NASA Astrophysics Data System (ADS)

    Block, M.; Ackermann, D.; Blaum, K.; Droese, C.; Düllmann, Ch. E.; Eibach, M.; Eliseev, S.; Haettner, E.; Herfurth, F.; Heßberger, F. P.; Hofmann, S.; Marx, G.; Ramirez, E. Minaya; Nesterenko, D.; Novikov, Yu. N.; Plaß, W. R.; Rodríguez, D.; Scheidenberger, C.; Schweikhard, L.; Thirolf, P. G.; Weber, C.

    2013-03-01

    Penning-trap mass spectrometry of radionuclides provides accurate mass values and absolute binding energies. Such mass measurements are sensitive indicators of the nuclear structure evolution far away from stability. Recently, direct mass measurements have been extended to the heavy elements nobelium (Z=102) and lawrencium (Z=103) with the Penning-trap mass spectrometer SHIPTRAP. The results probe nuclear shell effects at N=152. New developments will pave the way to access even heavier nuclides.

  2. An Energy Signature Scheme for Steam Trap Assessment and Flow Rate Estimation Using Pipe-Induced Acoustic Measurements

    SciTech Connect

    Olama, Mohammed M; Allgood, Glenn O; Kuruganti, Phani Teja; Lake, Joe E

    2012-01-01

    The US Congress has passed legislation dictating that all government agencies establish a plan and process for improving energy efficiencies at their sites. In response to this legislation, Oak Ridge National Laboratory (ORNL) has recently conducted a pilot study to explore the deployment of a wireless sensor system for a real-time measurement-based energy efficiency optimization framework within the steam distribution system within the ORNL campus. We make assessments on the real-time status of the distribution system by observing the state measurements of acoustic sensors mounted on the steam pipes/traps/valves. In this paper, we describe a spectral-based energy signature scheme that interprets acoustic vibration sensor data to estimate steam flow rates and assess steam traps health status. Experimental results show that the energy signature scheme has the potential to identify different steam trap health status and it has sufficient sensitivity to estimate steam flow rate. Moreover, results indicate a nearly quadratic relationship over the test region between the overall energy signature factor and flow rate in the pipe. The analysis based on estimated steam flow and steam trap status helps generate alerts that enable operators and maintenance personnel to take remedial action. The goal is to achieve significant energy-saving in steam lines by monitoring and acting on leaking steam pipes/traps/valves.

  3. Measurement of mass by optical forced oscillation of absorbing particles trapped in air

    NASA Astrophysics Data System (ADS)

    Lin, Jinda; Deng, Jianliao; Wei, Rong; Li, Yong-qing; Wang, Yuzhu

    2017-06-01

    We demonstrate the measurement of mass of the absorbing micro-particle trapped in air by optical forced oscillation. When the trapping light intensity is modulated sinusoidally, the particle in the trap undergoes forced oscillation and the amplitude of the oscillation depends directly on the modulated frequency. Based on a simple spring model, we fit the amplitudes versus the modulated frequencies and obtain the stiffness of the optical trap and the mass of the trapped particle. The fitting results show that, for a certain particle, the stiffness varies linearly with the trapping light intensity while the mass is consistent. The density of the micro-particle is then estimated and could be used to classify different kinds of absorbing particles, like C and CuO.

  4. Management of Cosmopolites sordidus and Metamasius hemipterus in banana by pheromone-based mass trapping.

    PubMed

    Alpizar, D; Fallas, M; Oehlschlager, A C; Gonzalez, L M

    2012-03-01

    Mass trapping Cosmopolites sordidus (Coleoptera, Curculionidae) using a pheromone-baited pitfall trap and Metamasius hemipterus (Coleoptera, Curculionidae) using a pheromone-sugarcane-baited open gallon trap was conducted in commercial banana. Four traps for each insect per hectare were placed in each of two 5-hectare plots of banana. Two additional 5-hectare plots were designated as controls and treated according to the plantation protocol. Capture rates of C. sordidus and M. hemipterus declined by >75 % over 10-12 months. In the banana growing region studied, corm damage was due primarily to C. sordidus, while only a minor amount of damage was attributable to M. hemipterus. Corm damage reduction in trapping plots was, thus, attributed primarily to C. sordidus trapping. In trapping plots, corm damage decreased by 61-64 % during the experiment. Banana bunch weights increased 23 % relative to control plots after 11-12 months of trapping. Fruit diameter did not vary between bunches harvested from trapping plots vs. control plots. Plant vigor, however, as determined by stem circumference at one meter above ground increased in plots with traps compared to control plots. Trapping for C. sordidus in two plantations of over 200 hectares each, reduced corm damage 62-86 % relative to pre-trapping levels. Insecticide control measures in place when the experiment commenced resulted in about 20-30 % corm damage, while use of pheromone trapping to manage C. sordidus lowered corm damage to 10 % or less. It is estimated that the increase in value of increased yield obtained in this trial (23 %) is about $4,240 USD per year per hectare, while the cost of pheromone trapping is approximately $185 USD per year per hectare. The trapping program becomes revenue neutral if bunch weights increase by an average of 1 % per year of trapping. Approximately 10 % of all plantation area in Costa Rica use the pheromone trapping system described here. The system also is used in Martinique

  5. High efficiency tandem mass spectrometry analysis using dual linear ion traps.

    PubMed

    Li, Linfan; Zhou, Xiaoyu; Hager, James W; Ouyang, Zheng

    2014-10-07

    Tandem mass spectrometry (MS/MS) plays an essential role in modern chemical analysis. It is used for differentiating isomers and isobars and suppressing chemical noise, which allows high precision quantitation. The MS/MS analysis has been typically applied by isolating the target precursor ions, while disregarding other ions, followed by a fragmentation process that produces the product ions. In this study, configurations of dual linear ion traps were explored to develop high efficiency MS/MS analysis. The ions trapped in the first linear ion trap were axially, mass-selectively transferred to the second linear ion trap for MS/MS analysis. Ions from multiple compounds simultaneously introduced into the mass spectrometer could be sequentially analyzed. This development enables highly efficient use of the sample. For miniature ion trap mass spectrometers with discontinuous atmospheric pressure interfaces, the analysis speed and the quantitation precision can be significantly improved.

  6. Conception of PIPERADE: A high-capacity Penning-trap mass separator for high isobaric contamination at DESIR

    NASA Astrophysics Data System (ADS)

    Minaya Ramirez, E.; Alfaurt, P.; Aouadi, M.; Ascher, P.; Blank, B.; Blaum, K.; Cam, J.-F.; Chauveau, P.; Daudin, L.; Delahaye, P.; Delalee, F.; Dupré, P.; El Abbeir, S.; Gerbaux, M.; Grévy, S.; Guérin, H.; Lunney, D.; Metz, F.; Naimi, S.; Perrot, L.; de Roubin, A.; Serani, L.; Thomas, B.; Thomas, J.-C.

    2016-06-01

    The DESIR (decay, excitation and storage of radioactive ions) facility at GANIL-SPIRAL2 will receive a large variety of exotic nuclei at low energy (up to 60 keV) with high intensities. However, the production methods of radioactive beams are non selective, limiting the purity of the beams of interest. Moreover, the high precision needed for nuclear structure and astrophysics studies using beta decay spectroscopy, laser spectroscopy and trap-based experiments at DESIR requires highly pure samples of exotic nuclei. The aim of the double-Pennig-trap mass separator PIPERADE is to deliver large and very pure samples of exotic nuclei to the different experiments in DESIR. New excitation schemes and a large inner diameter of the first trap will mitigate space charge effects to attempt trapping of up to 105 ions per pulse. The purification cycle will be performed in a few milliseconds so that short-lived nuclei can be purified. To extract the nuclides of interest from the large amount of isobaric contaminants, a resolving power of 105 is mandatory. Afterwards the ions of interest will be accumulated in the second trap until they constitute a sufficiently pure sample for the measurements. The status of the project is presented.

  7. Resolution of nuclear ground and isomeric states by a Penning trap mass spectrometer

    SciTech Connect

    Bollen, G.; Kluge, H.; Koenig, M.; Otto, T.; Savard, G.; Stolzenberg, H. ); Moore, R.B.; Rouleau, G. ); Audi, G. )

    1992-12-01

    Ground and isomeric states of a nucleus have been resolved for the first time by mass spectrometry. Measurements on [sup 78]Rb[sup [ital m],][ital g] and [sup 84]Rb[sup [ital m],][ital g] were performed using a tandem Penning trap mass spectrometer on-line with the isotope separator ISOLDE/CERN. The effects of ion-ion interaction were investigated for two ion species differing in mass and stored simultaneously in the trap.

  8. Development and Evaluation of a Variable-Temperature Quadrupole Ion Trap Mass Spectrometer

    NASA Astrophysics Data System (ADS)

    Derkits, David; Wiseman, Alex; Snead, Russell F.; Dows, Martina; Harge, Jasmine; Lamp, Jared A.; Gronert, Scott

    2016-02-01

    A new, variable-temperature mass spectrometer system is described. By applying polyimide heating tape to the end-cap electrodes of a Bruker (Bremen, Germany) Esquire ion trap, it is possible to vary the effective temperature of the system between 40 and 100°C. The modification does not impact the operation of the ion trap and the heater can be used for extended periods without degradation of the system. The accuracy of the ion trap temperatures was assessed by examining two gas-phase equilibrium processes with known thermochemistry. In each case, the variable-temperature ion trap provided data that were in good accord with literature data, indicating the effective temperature in the ion trap environment was being successfully modulated by the changes in the set-point temperatures on the end-cap electrodes. The new design offers a convenient and effective way to convert commercial ion trap mass spectrometers into variable-temperature instruments.

  9. Potential of mass trapping for long-term pest management and eradication of invasive species.

    PubMed

    El-Sayed, A M; Suckling, D M; Wearing, C H; Byers, J A

    2006-10-01

    Semiochemical-based pest management programs comprise three major approaches that are being used to provide environmentally friendly control methods of insect pests: mass trapping, "lure and kill," and mating disruption. In this article, we review the potential of mass trapping in long-term pest management as well as in the eradication of invasive species. We discuss similarities and differences between mass trapping and other two main approaches of semiochemical-based pest management programs. We highlight several study cases where mass trapping has been used either in long-term pest management [e.g., codling moth, Cydia pomonella (L.); pink bollworm, Pectinophora gossypiella (Saunders); bark beetles, palm weevils, corn rootworms (Diabrotica spp.); and fruit flies] or in eradication of invasive species [e.g., gypsy moth, Lymantria dispar (L.); and boll weevil, Anthonomus grandis grandis Boheman). We list the critical issues that affect the efficacy of mass trapping and compare these with previously published models developed to investigate mass trapping efficacy in pest control. We conclude that mass trapping has good potential to suppress or eradicate low-density, isolated pest populations; however, its full potential in pest management has not been adequately realized and therefore encourages further research and development of this technology.

  10. The State of the Art of Lethal Oviposition Trap-Based Mass Interventions for Arboviral Control

    PubMed Central

    Johnson, Brian J.; Ritchie, Scott A.; Fonseca, Dina M.

    2017-01-01

    The intensifying expansion of arboviruses highlights the need for effective invasive Aedes control. While mass-trapping interventions have long been discredited as inefficient compared to insecticide applications, increasing levels of insecticide resistance, and the development of simple affordable traps that target and kill gravid female mosquitoes, show great promise. We summarize the methodologies and outcomes of recent lethal oviposition trap-based mass interventions for suppression of urban Aedes and their associated diseases. The evidence supports the recommendation of mass deployments of oviposition traps to suppress populations of invasive Aedes, although better measures of the effects on disease control are needed. Strategies associated with successful mass-trap deployments include: (1) high coverage (>80%) of the residential areas; (2) pre-intervention and/or parallel source reduction campaigns; (3) direct involvement of community members for economic long-term sustainability; and (4) use of new-generation larger traps (Autocidal Gravid Ovitrap, AGO; Gravid Aedes Trap, GAT) to outcompete remaining water-holding containers. While to the best of our knowledge all published studies so far have been on Ae. aegypti in resource-poor or tropical settings, we propose that mass deployment of lethal oviposition traps can be used for focused cost-effective control of temperate Ae. albopictus pre-empting arboviral epidemics and increasing participation of residents in urban mosquito control. PMID:28075354

  11. The State of the Art of Lethal Oviposition Trap-Based Mass Interventions for Arboviral Control.

    PubMed

    Johnson, Brian J; Ritchie, Scott A; Fonseca, Dina M

    2017-01-08

    The intensifying expansion of arboviruses highlights the need for effective invasive Aedes control. While mass-trapping interventions have long been discredited as inefficient compared to insecticide applications, increasing levels of insecticide resistance, and the development of simple affordable traps that target and kill gravid female mosquitoes, show great promise. We summarize the methodologies and outcomes of recent lethal oviposition trap-based mass interventions for suppression of urban Aedes and their associated diseases. The evidence supports the recommendation of mass deployments of oviposition traps to suppress populations of invasive Aedes, although better measures of the effects on disease control are needed. Strategies associated with successful mass-trap deployments include: (1) high coverage (>80%) of the residential areas; (2) pre-intervention and/or parallel source reduction campaigns; (3) direct involvement of community members for economic long-term sustainability; and (4) use of new-generation larger traps (Autocidal Gravid Ovitrap, AGO; Gravid Aedes Trap, GAT) to outcompete remaining water-holding containers. While to the best of our knowledge all published studies so far have been on Ae. aegypti in resource-poor or tropical settings, we propose that mass deployment of lethal oviposition traps can be used for focused cost-effective control of temperate Ae. albopictus pre-empting arboviral epidemics and increasing participation of residents in urban mosquito control.

  12. Evaluation of the effectiveness of mass trapping with BG-sentinel traps for dengue vector control: a cluster randomized controlled trial in Manaus, Brazil.

    PubMed

    Degener, C M; Eiras, A E; Azara, T M F; Roque, R A; Rösner, S; Codeço, C T; Nobre, A A; Rocha, E S O; Kroon, E G; Ohly, J J; Geier, M

    2014-03-01

    The objective of this study was to assess the effectiveness of BG-Sentinel (BGS) traps for mass trapping at the household level to control the dengue vector, Aedes aegypti (L.), in Manaus (Brazil) by performing a cluster randomized controlled trial. After an initial questionnaire and baseline monitoring, 6 out of 12 clusters were randomly allocated to the intervention arm, where participating premises received one BGS trap for mass trapping. The other six clusters did not receive traps and were considered as the control arm. Biweekly monitoring with BGS in both arms assessed the impact of mass trapping. At the end of the study, a serological survey was conducted and a second questionnaire was conducted in the intervention arm. Entomological monitoring indicated that mass trapping with BGS traps significantly reduced the abundance of adult female Ae. aegypti during the first five rainy months. In the subsequent dry season when the mosquito population was lower, no effect of mass trapping was observed. Fewer Ae. aegypti females were measured in the intervention arm during the next rainy period, but no significant difference between arms was observed. The serological survey revealed that in participating houses of mass trapping areas recent dengue infections were less common than in control areas, although this effect was not statistically significant. The majority of participants responded positively to questions concerning user satisfaction. Our results suggest that BGS traps are a promising tool which might be deployed as part of dengue control programs; however, further investigations and larger scale studies are necessary.

  13. Photon-trap spectroscopy of mass-selected ions in an ion trap: optical absorption and magneto-optical effects.

    PubMed

    Terasaki, Akira; Majima, Takuya; Kondow, Tamotsu

    2007-12-21

    A novel experimental technique has been developed to observe a trace of optical absorption of free mass-selected ions. The technique combines a linear radio-frequency ion trap with a high-finesse optical cavity to perform cavity ring-down spectroscopy (photon-trap spectroscopy for generality), where the storage lifetime of photons in the cavity provides a sensitivity high enough to probe the trapped ions. Absorption spectra of the manganese ion Mn(+) are presented, showing hyperfine structures for the (7)P(2,3,4)<--(7)S(3) transitions in the ultraviolet range. Implementation of a solenoidal magnet allows us to observe the Zeeman splitting and the Faraday rotation as well.

  14. Isobar Separation in a Multiple-Reflection Time-of-Flight Mass Spectrometer by Mass-Selective Re-Trapping

    NASA Astrophysics Data System (ADS)

    Dickel, Timo; Plaß, Wolfgang R.; Lippert, Wayne; Lang, Johannes; Yavor, Mikhail I.; Geissel, Hans; Scheidenberger, Christoph

    2017-03-01

    A novel method for (ultra-)high-resolution spatial mass separation in time-of-flight mass spectrometers is presented. Ions are injected into a time-of-flight analyzer from a radio frequency (rf) trap, dispersed in time-of-flight according to their mass-to-charge ratios and then re-trapped dynamically in the same rf trap. This re-trapping technique is highly mass-selective and after sufficiently long flight times can provide even isobaric separation. A theoretical treatment of the method is presented and the conditions for optimum performance of the method are derived. The method has been implemented in a multiple-reflection time-of-flight mass spectrometer and mass separation powers (FWHM) in excess of 70,000, and re-trapping efficiencies of up to 35% have been obtained for the protonated molecular ion of caffeine. The isobars glutamine and lysine (relative mass difference of 1/4000) have been separated after a flight time of 0.2 ms only. Higher mass separation powers can be achieved using longer flight times. The method will have important applications, including isobar separation in nuclear physics and (ultra-)high-resolution precursor ion selection in multiple-stage tandem mass spectrometry.

  15. Isobar Separation in a Multiple-Reflection Time-of-Flight Mass Spectrometer by Mass-Selective Re-Trapping

    NASA Astrophysics Data System (ADS)

    Dickel, Timo; Plaß, Wolfgang R.; Lippert, Wayne; Lang, Johannes; Yavor, Mikhail I.; Geissel, Hans; Scheidenberger, Christoph

    2017-06-01

    A novel method for (ultra-)high-resolution spatial mass separation in time-of-flight mass spectrometers is presented. Ions are injected into a time-of-flight analyzer from a radio frequency (rf) trap, dispersed in time-of-flight according to their mass-to-charge ratios and then re-trapped dynamically in the same rf trap. This re-trapping technique is highly mass-selective and after sufficiently long flight times can provide even isobaric separation. A theoretical treatment of the method is presented and the conditions for optimum performance of the method are derived. The method has been implemented in a multiple-reflection time-of-flight mass spectrometer and mass separation powers (FWHM) in excess of 70,000, and re-trapping efficiencies of up to 35% have been obtained for the protonated molecular ion of caffeine. The isobars glutamine and lysine (relative mass difference of 1/4000) have been separated after a flight time of 0.2 ms only. Higher mass separation powers can be achieved using longer flight times. The method will have important applications, including isobar separation in nuclear physics and (ultra-)high-resolution precursor ion selection in multiple-stage tandem mass spectrometry. [Figure not available: see fulltext.

  16. Isobar Separation in a Multiple-Reflection Time-of-Flight Mass Spectrometer by Mass-Selective Re-Trapping.

    PubMed

    Dickel, Timo; Plaß, Wolfgang R; Lippert, Wayne; Lang, Johannes; Yavor, Mikhail I; Geissel, Hans; Scheidenberger, Christoph

    2017-03-15

    A novel method for (ultra-)high-resolution spatial mass separation in time-of-flight mass spectrometers is presented. Ions are injected into a time-of-flight analyzer from a radio frequency (rf) trap, dispersed in time-of-flight according to their mass-to-charge ratios and then re-trapped dynamically in the same rf trap. This re-trapping technique is highly mass-selective and after sufficiently long flight times can provide even isobaric separation. A theoretical treatment of the method is presented and the conditions for optimum performance of the method are derived. The method has been implemented in a multiple-reflection time-of-flight mass spectrometer and mass separation powers (FWHM) in excess of 70,000, and re-trapping efficiencies of up to 35% have been obtained for the protonated molecular ion of caffeine. The isobars glutamine and lysine (relative mass difference of 1/4000) have been separated after a flight time of 0.2 ms only. Higher mass separation powers can be achieved using longer flight times. The method will have important applications, including isobar separation in nuclear physics and (ultra-)high-resolution precursor ion selection in multiple-stage tandem mass spectrometry. Graphical Abstract ᅟ.

  17. Electron capture dissociation in a digital ion trap mass spectrometer.

    PubMed

    Ding, Li; Brancia, Francesco L

    2006-03-15

    Electron capture dissociation was implemented in a digital ion trap without using any magnetic field to focus the electrons. Since rectangular waveforms are employed in the DIT for both trapping and dipole excitation, electrons can be injected into the trap when the electric field is constant. Following deceleration, electrons reach the precursor ion cloud. The fragment ions produced by interactions with the electron beam are subsequently analyzed by resonant ejection. [Glu(1)]-Fibrinopeptide B and substance P were used to evaluate the performance of the current design. Fragmentation efficiency of 5.5% was observed for substance P peptide ions. Additionally, analysis of the monophosphorylated peptide FQ[pS]EEQQQTEDELQDK shows that in the resulting c- and z-type ions, the phosphate group is retained on the phophoserine residue, providing information on which amino acid residue the modification is located.

  18. SMILETRAP—A Penning trap facility for precision mass measurements using highly charged ions

    NASA Astrophysics Data System (ADS)

    Bergström, I.; Carlberg, C.; Fritioff, T.; Douysset, G.; Schönfelder, J.; Schuch, R.

    2002-07-01

    The precision of mass measurements in a Penning trap increases linearly with the charge of the ion. Therefore we have attached a Penning trap, named SMILETRAP, to the electron beam ion source CRYSIS at MSL. CRYSIS is via an isotope separator connected to an ion source that can deliver singly charged ions of practically any element. In CRYSIS charge state breeding occurs by intense electron bombardment. We have shown that it is possible to produce, catch and measure the cyclotron frequencies of ions in the charge region 1+ to 52+. The relevant observable in mass measurements using a Penning trap is the ratio of the cyclotron frequencies of the ion of interest and ion used as a mass reference. High precision requires that the two frequencies are measured after one another in the shortest possible time. For reasons of convenience the precision trap operates at room temperature. So far it has been believed that warm traps working at 4 K are required for high mass precision with exactly one ion in the trap at a time. In this paper we demonstrate that mass precision of a few parts in 10 10 also can be obtained in a warm trap at a pressure of about 5×10 -12 mbar by stabilizing the pressure in the He-dewar, the trap temperature and the frequency synthesizer. In order to reduce the influence of changes of the magnetic field to a level below 10 -10, the scanning of the frequencies close to the resonances of both the ion of interest and the reference ion is done in a total time <2 min. Trapping of ions is a statistical procedure, allowing more than one ion to be trapped in each measurement cycle. However, after completing the measurements it is possible to reject all information except for events based on 1 and 2 trapped ions. The procedures of producing, transporting, catching, exciting and measuring the cyclotron resonance frequencies of highly charged ions and the mass reference ions with the time-of-flight method are described. In routine measurements with 1 s excitation

  19. A new scheme to accumulate positrons in a Penning-Malmberg trap with a linac-based positron pulsed source

    NASA Astrophysics Data System (ADS)

    Dupré, P.

    2013-03-01

    The Gravitational Behaviour of Antimatter at Rest experiment (GBAR) is designed to perform a direct measurement of the weak equivalence principle on antimatter by measuring the acceleration of anti-hydrogen atoms in the gravitational field of the Earth. The experimental scheme requires a high density positronium (Ps) cloud as a target for antiprotons, provided by the Antiproton Decelerator (AD) - Extra Low Energy Antiproton Ring (ELENA) facility at CERN. The Ps target will be produced by a pulse of few 1010 positrons injected onto a positron-positronium converter. For this purpose, a slow positron source using an electron Linac has been constructed at Saclay. The present flux is comparable with that of 22Na-based sources using solid neon moderator. A new positron accumulation scheme with a Penning-Malmberg trap has been proposed taking advantage of the pulsed time structure of the beam. In the trap, the positrons are cooled by interaction with a dense electron plasma. The overall trapping efficiency has been estimated to be ˜70% by numerical simulations.

  20. Charge Breeding Techniques in an Electron Beam Ion Trap for High Precision Mass Spectrometry at TITAN

    NASA Astrophysics Data System (ADS)

    MacDonald, T. D.; Simon, M. C.; Bale, J. C.; Chowdhury, U.; Eibach, M.; Gallant, A. T.; Lennarz, A.; Simon, V. V.; Chaudhuri, A.; Grossheim, A.; Kwiatkowski, A. A.; Schultz, B. E.; Dilling, J.

    2012-10-01

    Penning trap mass spectrometry is the most accurate and precise method available for performing atomic mass measurements. TRIUMF's Ion Trap for Atomic and Nuclear science is currently the only facility to couple its Penning trap to a rare isotope facility and an electron beam ion trap (EBIT). The EBIT is a valuable tool for beam preparation: since the precision scales linearly with the charge state, it takes advantage of the precision gained by using highly charged ions. However, this precision gain is contingent on fast and efficient charge breeding. An optimization algorithm has been developed to identify the optimal conditions for running the EBIT. Taking only the mass number and half-life of the isotope of interest as inputs, the electron beam current density, charge breeding time, charge state, and electron beam energy are all specified to maximize this precision. An overview of the TITAN charge breeding program, and the results of charge breeding simulations will be presented.

  1. Ion trap mass spectrometry in the structural analysis of haemoglobin peptides modified by epichlorohydrin and diepoxybutane.

    PubMed

    Miraglia, Nadia; Basile, Adriana; Pieri, Maria; Acampora, Antonio; Malorni, Livia; De Giulio, Beatrice; Sannolo, Nicola

    2002-01-01

    Ion trap mass spectrometry has been shown to be particularly suitable for the structural analysis of high molecular weight peptides directly fragmented in the mass analyser without needing further sub-digestion reactions. Here we report the advantages of using multi-stage ion trap mass spectrometry in the structural characterisation of haemoglobin alkylated with epichlorohydrin and diepoxybutane. Alkylated globins were digested with trypsin and the peptide mixtures were analysed by MS(3). This technique allows the sequential fragmentation of peptides under analysis, giving rise to MS(3) product ion spectra with additional information with respect to MS(2) mass spectra. The results obtained complete the previously reported structural characterisation of alkylated haemoglobin, demonstrating the potential of ion trap mass spectrometry.

  2. Scheme for generating the singlet state of three atoms trapped in distant cavities coupled by optical fibers

    SciTech Connect

    Wang, Dong-Yang; Wen, Jing-Ji; Bai, Cheng-Hua; Hu, Shi; Cui, Wen-Xue; Wang, Hong-Fu; Zhu, Ai-Dong; Zhang, Shou

    2015-09-15

    An effective scheme is proposed to generate the singlet state with three four-level atoms trapped in three distant cavities connected with each other by three optical fibers, respectively. After a series of appropriate atom–cavity interactions, which can be arbitrarily controlled via the selective pairing of Raman transitions and corresponding optical switches, a three-atom singlet state can be successfully generated. The influence of atomic spontaneous decay, photon leakage of cavities and optical fibers on the fidelity of the state is numerically simulated showing that the three-atom singlet state can be generated with high fidelity by choosing the experimental parameters appropriately.

  3. Trapping planets in an evolving protoplanetary disk: preferred time, locations, and planet mass

    NASA Astrophysics Data System (ADS)

    Baillié, K.; Charnoz, S.; Pantin, E.

    2016-05-01

    Context. Planet traps are necessary to prevent forming planets from falling onto their host star by type I inward migration. Surface mass density and temperature gradient irregularities favor the apparition of traps (planet accumulation region) and deserts (planet depletion zone). These features are found at the dust sublimation lines and heat transition barriers. Aims: We study how planets may remain trapped or escape these traps as they grow and as the disk evolves viscously with time. Methods: We numerically model the temporal viscous evolution of a protoplanetary disk by coupling its dynamics, thermodynamics, geometry, and composition. The resulting midplane density and temperature profiles allow the modeling of the interactions of this type of evolving disk with potential planets, even before the steady state is reached. Results: We follow the viscous evolution of a minimum mass solar nebula and compute the Lindblad and corotation torques that this type of disk would exert on potential planets of various masses that are located within the planetary formation region. We determine the position of planet traps and deserts in relationship with the sublimation lines, shadowed regions, and heat transition barriers. We notice that the planet mass affects the trapping potential of the mentioned structures through the saturation of the corotation torque. Planets that are a few tens of Earth masses can be trapped at the sublimation lines until they reach a certain mass while planets that are more massive than 100 M⊕ can only be trapped permanently at the heat transition barriers. They may also open gaps beyond 5 au and enter type II migration. Conclusions: Coupling a bimodal planetary migration model with a self-consistent evolved disk, we were able to distinguish several potential planet populations after five million years of evolution: two populations of giant planets that could stay trapped around 5.5 and 9 au and possibly open gaps, some super-Earths trapped

  4. Ion sponge: a 3-dimentional array of quadrupole ion traps for trapping and mass-selectively processing ions in gas phase.

    PubMed

    Xu, Wei; Li, Linfan; Zhou, Xiaoyu; Ouyang, Zheng

    2014-05-06

    In this study, the concept of ion sponge has been explored for developing 3D arrays of large numbers of ion traps but with simple configurations. An ion sponge device with 484 trapping units in a volume of 10 × 10 × 3.2 cm has been constructed by simply stacking 9 meshes together. A single rf was used for trapping ions and mass-selective ion processing. The ion sponge provides a large trapping capacity and is highly transparent for transfer of ions, neutrals, and photons for gas phase ion processing. Multiple layers of quadrupole ion traps, with 121 trapping units in each layer, can operate as a single device for MS or MS/MS analysis, or as a series of mass-selective trapping devices with interlayer ion transfers facilitated by AC and DC voltages. Automatic sorting of ions to different trapping layers based on their mass-to-charge (m/z) ratios was achieved with traps of different sizes. Tandem-in-space MS/MS has also been demonstrated with precursor ions and fragment ions trapped in separate locations.

  5. Ion Sponge: A 3-Dimentional Array of Quadrupole Ion Traps for Trapping and Mass-Selectively Processing Ions in Gas Phase

    PubMed Central

    2015-01-01

    In this study, the concept of ion sponge has been explored for developing 3D arrays of large numbers of ion traps but with simple configurations. An ion sponge device with 484 trapping units in a volume of 10 × 10 × 3.2 cm has been constructed by simply stacking 9 meshes together. A single rf was used for trapping ions and mass-selective ion processing. The ion sponge provides a large trapping capacity and is highly transparent for transfer of ions, neutrals, and photons for gas phase ion processing. Multiple layers of quadrupole ion traps, with 121 trapping units in each layer, can operate as a single device for MS or MS/MS analysis, or as a series of mass-selective trapping devices with interlayer ion transfers facilitated by AC and DC voltages. Automatic sorting of ions to different trapping layers based on their mass-to-charge (m/z) ratios was achieved with traps of different sizes. Tandem-in-space MS/MS has also been demonstrated with precursor ions and fragment ions trapped in separate locations. PMID:24758328

  6. Microfabricated ion trap mass spectrometry for characterization of organics and potential biomarkers

    NASA Astrophysics Data System (ADS)

    Austin, Daniel

    Mass spectrometry is a powerful analytical technique with a strong history in planetary exploration, and is the method of choice for detection and identification of organic and biological molecules. MS instrumentation can also be combined with techniques such as gas chromatography, liquid chromatography, or chiral separation, which are particularly important for analysis of complex mixtures or possible homochirality. Ion traps have several inherent advantages, including speed of analysis (important for GC-MS), MS/MS capabilities (important to identification of unknown compounds), excellent sensitivity, and ease of coupling with ambient ionization techniques that are under development for biomolecule detection. We report on progress in using microfabrication techniques to produce radiofrequency quadrupole ion traps that are much smaller, lighter, and lower power than existing instruments. We produce ion traps using an assembly of two ceramic plates, the facing surfaces of which are lithographically patterned with electrodes. This approach allows great flexibility in the trap geometry, and we have demonstrated working mass spectrometers with quadrupole, linear, and toroidal trapping fields. The approach also allows correction of higher-order terms in the electric field. With this system, mass resolution of up to 1300 has been demonstrated, which is adequate for identification of a wide range of potential biomarkers. Capabilities such as tandem analysis have also been demonstrated. Of particular interest is an ion trap that contains both quadrupole and toroidal trapping regions simultaneously and coaxially. Ions can be trapped as a large reservoir in the toroidal region and introduced in small batches to the quadrupole region for mass analysis. This capability is particularly valuable where the sample of interest is very small, such as microfossil with trace organics, and where the organic inventory is both complex and unknown. Development and results of this device

  7. General mass scheme for jet production in DIS

    NASA Astrophysics Data System (ADS)

    Kotko, P.; Slominski, W.

    2012-11-01

    We propose a method for calculating DIS jet production cross sections in QCD at NLO accuracy with consistent treatment of heavy quarks. The scheme relies on the dipole subtraction method for jets, which we extend to all possible initial state splittings with heavy partons, so that the Aivazis-Collins-Olness-Tung massive collinear factorization scheme can be applied. As a first check of the formalism we recover the Aivazis-Collins-Olness-Tung result for the heavy quark structure function using a dedicated Monte Carlo program.

  8. Operational Parameters, Considerations, and Design Decisions for Resource-Constrained Ion Trap Mass Spectrometers

    NASA Technical Reports Server (NTRS)

    Danell, Ryan M.; VanAmerom, Friso H. W.; Pinnick, Veronica; Cotter, Robert J.; Brickerhoff, William; Mahaffy, Paul

    2011-01-01

    Mass spectrometers are increasingly finding applications in new and unique areas, often in situations where key operational resources (i.e. power, weight and size) are limited. One such example is the Mars Organic Molecule Analyzer (MOMA). This instrument is a joint venture between NASA and the European Space Agency (ESA) to develop an ion trap mass spectrometer for chemical analysis on Mars. The constraints on such an instrument are significant as are the performance requirements. While the ideal operating parameters for an ion trap are generally well characterized, methods to maintain analytical performance with limited power and system weight need to be investigated and tested. Methods Experiments have been performed on two custom ion trap mass spectrometers developed as prototypes for the MOMA instrument. This hardware consists of quadrupole ion trap electrodes that are 70% the size of common commercial instrumentation. The trapping RF voltage is created with a custom tank circuit that can be tuned over a range of RF frequencies and is driven using laboratory supplies and amplifiers. The entire instrument is controlled with custom Lab VIEW software that allows a high degree of flexibility in the definition of the scan function defining the ion trap experiment. Ions are typically generated via an internal electron ionization source, however, a laser desorption source is also in development for analysis of larger intact molecules. Preliminary Data The main goals in this work have been to reduce the power required to generate the radio frequency trapping field used in an ion trap mass spectrometer. Generally minimizing the power will also reduce the volume and mass of the electronics to support the instrument. In order to achieve optimum performance, commercial instruments typically utilize RF frequencies in the 1 MHz range. Without much concern for power usage, they simply generate the voltage required to access the mass range of interest. In order to reduce the

  9. Experimental and theoretical comparison of different optical excitation schemes for a compact coherent population trapping Rb vapor clock

    NASA Astrophysics Data System (ADS)

    Warren, Z.; Shahriar, M. S.; Tripathi, R.; Pati, G. S.

    2017-08-01

    We have investigated, theoretically as well as experimentally, the relative merits and demerits of using three different optical configurations for a compact coherent population trapping (CPT) vapor clock using 87Rb. These correspond to the following choices of polarizations for the two Raman beams: \\text{lin} \\parallel \\text{lin} , (σ,~σ ), and push-pull optical pumping (PPOP), applied on the D1 manifold. We have used a multi-level atomic model to study the dependence of the CPT spectrum on axial as well as transverse magnetic fields for these three schemes. Corresponding experimental studies have been performed using a laboratory scale CPT clock employing a two cm long, isotopically pure rubidium cell, loaded with a buffer gas. We observed a CPT contrast close to 20% with a sub-kilohertz linewidth by adopting the PPOP scheme. We discuss the strengths and weaknesses of each of the three optical excitation schemes, and present frequency-stability measurement data for the prototype clock.

  10. Experimental Characterization of Secular Frequency Scanning in Ion Trap Mass Spectrometers

    NASA Astrophysics Data System (ADS)

    Snyder, Dalton T.; Pulliam, Christopher J.; Wiley, Joshua S.; Duncan, Jason; Cooks, R. Graham

    2016-07-01

    Secular frequency scanning is implemented and characterized using both a benchtop linear ion trap and a miniature rectilinear ion trap mass spectrometer. Separation of tetraalkylammonium ions and those from a mass calibration mixture and from a pesticide mixture is demonstrated with peak widths approaching unit resolution for optimized conditions using the benchtop ion trap. The effects on the spectra of ion trap operating parameters, including waveform amplitude, scan direction, scan rate, and pressure are explored, and peaks at black holes corresponding to nonlinear (higher-order field) resonance points are investigated. Reverse frequency sweeps (increasing mass) on the Mini 12 are shown to result in significantly higher ion ejection efficiency and superior resolution than forward frequency sweeps that decrement mass. This result is accounted for by the asymmetry in ion energy absorption profiles as a function of AC frequency and the shift in ion secular frequency at higher amplitudes in the trap due to higher order fields. We also found that use of higher AC amplitudes in forward frequency sweeps biases ions toward ejection at points of higher order parametric resonance, despite using only dipolar excitation. Higher AC amplitudes also increase peak width and decrease sensitivity in both forward and reverse frequency sweeps. Higher sensitivity and resolution were obtained at higher trap pressures in the secular frequency scan, in contrast to conventional resonance ejection scans, which showed the opposite trend in resolution on the Mini 12. Mass range is shown to be naturally extended in secular frequency scanning when ejecting ions by sweeping the AC waveform through low frequencies, a method which is similar, but arguably superior, to the more usual method of mass range extension using low q resonance ejection.

  11. Higher-Pressure Ion Funnel Trap Interface for Orthogonal Time-of-Flight Mass Spectrometry

    PubMed Central

    Ibrahim, Yehia; Belov, Mikhail E.; Tolmachev, Aleksey V.; Prior, David C.; Smith, Richard D.

    2008-01-01

    A combined electrodynamic ion funnel and ion trap coupled to an orthogonal acceleration (oa)-time-of-flight mass spectrometer (oa-TOF MS) was developed and characterized. The ion trap was incorporated through the use of added terminal electrodynamic ion funnel electrodes enabling control over the axial DC gradient in the trap section. The ion trap operates efficiently at a pressure of 1 Torr, and measurements indicate a maximum charge capacity of ~3×107 charges. An order of magnitude increase in sensitivity was observed in the analysis of low concentration peptides mixtures with oa-TOF MS in the trapping mode as compared to the continuous regime. A signal increase in the trapping mode was accompanied by reduction in the background chemical noise, due to more efficient desolvation of e.g., solvent related clusters. Controlling the ion trap ejection time was found to result in efficient removal of singly charged species and improving signal-to-noise ratio (S/N) for the multiply charged analytes. PMID:17850113

  12. Bait station devices can improve mass trapping performance for the control of the Mediterranean fruit fly.

    PubMed

    Navarro-Llopis, Vicente; Primo, Jaime; Vacas, Sandra

    2015-07-01

    The use of traps and other attract-and-kill devices in pest management strategies to reduce Mediterranean fruit fly populations has proved to be efficient. Nevertheless, many farmers are concerned about the effect of these devices on the trees where they are hung. Direct field observations have revealed that fruit damage is higher in trees with traps than in trees without them. This work evaluates the efficacy of different types of attract-and-kill device to protect fruit of the single tree on which the device is placed. Results suggested that trees with traps had at least the same fruit damage than trees without them. When traps were baited with protein hydrolysate, fruit damage was even higher than in trees without traps. However, fruit damage was significantly diminished when efficient bait station devices were used. Although mass trapping is able to control fruit fly populations as a control method, trees with some types of trap and bait are more susceptible to fly puncture. However, bait station devices reduce fruit damage in the single trees where they are hung. Bait stations are more efficient in fruit protection because fruit flies are affected as soon as they contact the device. Some recommendations for the use of the different attract-and-kill devices are discussed. © 2014 Society of Chemical Industry.

  13. EBIT in the Magnetic Trapping Mode: Mass Spectrometry, Atomic Lifetime Measurements, and Charge Transfer Reactions of Highly Charged Atomic Ions

    SciTech Connect

    Schweikhard, L; Beiersdorfer, P; Trabert, E

    2001-07-10

    Although it may sound like a contradiction in terms, the electron beam ion trap (EBIT) works as an ion trap even when the electron beam is switched off. We present various experiments that exploit the ''magnetic trapping mode'' for investigations of ion confinement, charge exchange processes, atomic lifetime and ion mass measurements.

  14. Design of a Laser Ablation Ion Source for High-Precision Penning Trap Mass Spectrometry

    NASA Astrophysics Data System (ADS)

    Hunt, Curtis; Ratnayake, Ishara; Hawks, Paul; Bryce, Richard; Redshaw, Matthew

    2014-05-01

    High-precision atomic mass measurements provide important data for a wide range of fields including atomic, nuclear and neutrino physics, determination of fundamental constants, and metrology. At Central Michigan University we are building a Penning trap system that will utilize ions produced by external ion sources to allow access to a wide range of isotopes, including long-lived radioactive isotopes and isotopes with low natural abundances. The ions will be transported to a ``capture'' trap, before being transferred to double precision-measurement trap structure. In this poster we will present the design of a laser ablation ion source and the ion extraction and transport optics. We will report on the current status of the construction and operation of the ion source and the CMU Penning trap. This work supported in part by NSF award no. 1307233.

  15. High precision Penning trap mass spectrometry of rare isotopes produced by projectile fragmentation

    NASA Astrophysics Data System (ADS)

    Kwiatkowski, A. A.; Barquest, B. R.; Block, M.; Bollen, G.; Campbell, C. M.; Ferrer, R.; Lincoln, D. L.; Morrissey, D. J.; Pang, G. K.; Redshaw, M.; Ringle, R.; Schwarz, S.; Savory, J.

    2011-09-01

    The Low Energy Beam and Ion Trap (LEBIT) is the only present facility to combine high precision Penning trap mass spectrometry with fast beam projectile fragmentation. Located at the National Superconducting Cyclotron Laboratory (NSCL), LEBIT is able to measure radionuclides produced in a chemically independent process with minimal decay losses. Recent exotic mass measurements include 66As, 63-66Fe, and 32Si. 66As is a new candidate to test the Conserved Vector Current (CVC) hypothesis. The masses of the neutron-rich iron isotopes provide additional information about the mass surface and the subshell closure at N = 40. 32Si is a member of the A = 32, T = 2 quintet; its measurement permits the most stringent test of the validity of the isobaric multiplet mass equation (IMME). An overview of some recent measurements will be presented as well as advanced techniques for ion manipulation.

  16. Ion/molecule reactions, mass spectrometry and optical spectroscopy in a linear ion trap

    NASA Astrophysics Data System (ADS)

    Welling, M.; Schuessler, H. A.; Thompson, R. I.; Walther, H.

    1998-01-01

    A linear-geometry, radio-frequency, quadrupole ion trap has been developed to generate, purify, accumulate and study atomic and molecular ions in the gas phase. By employing a trap-based system, both reactant and product ions can be stored for significant time periods, which can both enhance the efficiency of gas-phase reaction processes and create an environment to observe collision products after vibrational and rotational excitations have had time to relax. Relaxation occurs via viscous cooling with a dilute buffer gas or via laser cooling. Furthermore, the setup is particularly useful for performing optical spectroscopy on the trapped ions. Atomic and molecular ovens are used to generate thermal beams of neutral species, which are then ionized by electron bombardment. The ions can be trapped, or they can be collided with neutral molecules (e.g. C60) under well defined experimental conditions. The collision energies are variable over a range from nearly 0 to 200 eV. This feature makes possible studies of complex formation, charge transfer and collision-induced fragmentation as a function of kinetic energy. A wide range of masses of up to 4000 u can be stored and manipulated with this apparatus. Two mass spectrometric techniques for the analysis of trapped ionic species are presented. In one method, parametric excitation of the secular motion is used to generate mass spectra with resolutions as high as 1 part in 800 with a simple experimental setup. The second method is capable of quickly generating mass spectra over the entire range of trapped masses, but has only moderate resolution. These spectra are generated by linearly sweeping the rf-trapping voltage to zero and detecting ions as their trap depth falls below a threshold value. In the trapping volume, which is 10 cm in length and 200 [mu]m in diameter, 106 ions can be loaded and stored, corresponding to an ion density above 108 cm-3. Such densities facilitate spectroscopy of the stored ions. Both laser

  17. Numerical solution of the gross-pitaevskii equation using an explicit finite-difference scheme: An application to trapped bose-einstein condensates

    PubMed

    Cerimele; Chiofalo; Pistella; Succi; Tosi

    2000-07-01

    We present the application of a fast, explicit time-marching scheme for the solution of the Gross-Pitaevskii equation in cylindrical geometry. The scheme is validated on simple analytical tests and demonstrated for two situations of physical interest in experiments on the Bose-Einstein condensation (BEC) of trapped alkali-metal vapors. It is tested by reproducing known results on the free expansion of a BEC after removing a cylindrical trap, and it is then used to address the formation of matter-wave pulses that result from gravity-induced transport of a condensate in an optical potential.

  18. Screening of drugs and toxic compounds with liquid chromatography-linear ion trap tandem mass spectrometry.

    PubMed

    Sauvage, François-Ludovic; Saint-Marcoux, Franck; Duretz, Bénédicte; Deporte, Didier; Lachatre, Gérard; Marquet, Pierre

    2006-09-01

    In clinical and forensic toxicology, general unknown screening is used to detect and identify exogenous compounds. In this study, we aimed to develop a comprehensive general unknown screening method based on liquid chromatography coupled with a hybrid triple-quadrupole linear ion trap mass spectrometer. After solid-phase extraction, separation was performed using gradient reversed-phase chromatography. The mass spectrometer was operated in the information-dependent acquisition mode, switching between a survey scan acquired in the Enhanced Mass Spectrometry mode with dynamic subtraction of background noise and a dependent scan obtained in the enhanced product ion scan mode. The complete cycle time was 1.36 s. A library of 1000 enhanced product ion-tandem mass spectrometry spectra in positive mode and 250 in negative mode, generated using 3 alternated collision tensions during each scan, was created by injecting pure solutions of drugs and toxic compounds. Comparison with HPLC-diode array detection and gas chromatography-mass spectrometry for the analysis of 36 clinical samples showed that linear ion trap tandem mass spectrometry could identify most of the compounds (94% of the total). Some compounds were detected only by 1 of the other 2 techniques. Specific clinical cases highlighted the advantages and limitations of the method. A unique combination of new operating modes provided by hybrid triple-quadrupole linear ion trap mass spectrometers and new software features allowed development of a comprehensive and efficient method for the general unknown screening of drugs and toxic compounds in blood or urine.

  19. Collision-induced dissociation of glycero phospholipids using electrospray ion-trap mass spectrometry.

    PubMed

    Larsen, A; Uran, S; Jacobsen, P B; Skotland, T

    2001-01-01

    Characterisation of phospholipids was achieved using collision-induced dissociation (CID) with an ion-trap mass spectrometer. The product ions were compared with those obtained with a triple quadrupole mass spectrometer. In the negative ion mode the product ions were mainly sn-1 and sn-2 lyso-phospholipids with neutral loss of ketene in combination with neutral loss of the polar head group. Less abundant product ions were sn-1 and sn-2 carboxylate anions. CID using a triple quadrupole mass spectrometer, however, gave primarily the sn-1 and sn-2 carboxylate anions together with lyso-phosphatidic acid with neutral loss of water. For the ion trap a charge-remote-type mechanism is proposed for formation of the lyso-phospholipid product ions by loss of alpha-hydrogen on the fatty acid moiety, electron rearrangement and neutral loss of ketene. A second mechanism involves nucleophilic attack of the phosphate oxygen on the sn-1 and sn-2 glycerol backbone to form carboxylate anions with neutral loss of cyclo lyso-phospholipids. CID (MS(3) and MS(4)) of the lyso-phospholipids using the ion-trap gave the same carboxylate anions as those obtained with a triple quadrupole instrument where multiple collisions in the collision cell are expected to occur. The data demonstrate that phospholipid species determination can be performed by using LC/MS(n) with an ion-trap mass spectrometer with detection of the lyso-phospholipid anions. The ion-trap showed no loss in sensitivity in full scan MS(n) compared to multiple reaction monitoring data acquisition. In combination with on-line liquid chromatography this feature makes the ion-trap useful in the scanning modes for rapid screening of low concentrations of phospholipid species in biological samples as recently described (Uran S, Larsen A, Jacobsen PB, Skotland T. J. Chromatogr. B 2001; 758: 265).

  20. A mass-conserving advection scheme for offline simulation of scalar transport in coastal ocean models

    NASA Astrophysics Data System (ADS)

    Gillibrand, P. A.; Herzfeld, M.

    2016-05-01

    We present a flux-form semi-Lagrangian (FFSL) advection scheme designed for offline scalar transport simulation with coastal ocean models using curvilinear horizontal coordinates. The scheme conserves mass, overcoming problems of mass conservation typically experienced with offline transport models, and permits long time steps (relative to the Courant number) to be used by the offline model. These attributes make the method attractive for offline simulation of tracers in biogeochemical or sediment transport models using archived flow fields from hydrodynamic models. We describe the FFSL scheme, and test it on two idealised domains and one real domain, the Great Barrier Reef in Australia. For comparison, we also include simulations using a traditional semi-Lagrangian advection scheme for the offline simulations. We compare tracer distributions predicted by the offline FFSL transport scheme with those predicted by the original hydrodynamic model, assess the conservation of mass in all cases and contrast the computational efficiency of the schemes. We find that the FFSL scheme produced very good agreement with the distributions of tracer predicted by the hydrodynamic model, and conserved mass with an error of a fraction of one percent. In terms of computational speed, the FFSL scheme was comparable with the semi-Lagrangian method and an order of magnitude faster than the full hydrodynamic model, even when the latter ran in parallel on multiple cores. The FFSL scheme presented here therefore offers a viable mass-conserving and computationally-efficient alternative to traditional semi-Lagrangian schemes for offline scalar transport simulation in coastal models.

  1. Development and Deployment of Retrofit PolarisQ Ion Trap Mass Spectrometer for Isotope Ratio Measurements

    SciTech Connect

    Thompson, Cyril V.; Whitten, William B.

    2015-11-01

    This report describes Oak Ridge National Laboratory’s (ORNL) FY15 progress in support of National Nuclear Security Administration’s (NNSA) Portable Mass Spectrometer project. A retrofit PolarisQ ion trap mass spectrometer (RPMS) has been assembled from components of two PolarisQ ion trap mass spectrometers used in previous isotope ratio programs. The retrofit mass spectrometer includes a custom Hastelloy vacuum chamber which is about ¼ the size of the standard aluminum vacuum chamber and reduces the instrument weight from the original by nine pounds. In addition, the new vacuum chamber can be independently heated to reduce impurities such as water, which reacts with UF6 to produce HF in the vacuum chamber. The analyzer and all components requiring service are mounted on the chamber lid, facilitating quick and easy replacement of consumable components such as the filament and electron multiplier.

  2. Photoelectron emission as an alternative electron impact ionization source for ion trap mass spectrometry.

    PubMed

    Gamez, Gerardo; Zhu, Liang; Schmitz, Thomas A; Zenobi, Renato

    2008-09-01

    Electron impact ionization has several known advantages; however, heated filament electron sources have pressure limitations and their power consumption can be significant for certain applications, such as in field-portable instruments. Herein, we evaluate a VUV krypton lamp as an alternative source for ionization inside the ion trap of a mass spectrometer. The observed fragmentation patterns are more characteristic of electron impact ionization than photoionization. In addition, mass spectra of analytes with ionization potentials higher than the lamp's photon energy (10.6 eV) can be easily obtained. A photoelectron impact ionization mechanism is suggested by the observed data allowed by the work function of the ion trap electrodes (4.5 eV), which is well within the lamp's photon energy. In this case, the photoelectrons emitted at the surface of the ion trap end-cap electrode are accelerated by the applied rf field to the ring electrode. This allows the photoelectrons to gain sufficient energy to ionize compounds with high ionization potentials to yield mass spectra characteristic of electron impact. In this manner, electron impact ionization can be used in ion trap mass spectrometers at low powers and without the limitations imposed by elevated pressures on heated filaments.

  3. Mean Flow Velocities and Mass Transport for Equatorially-Trapped Water Waves with an Underlying Current

    NASA Astrophysics Data System (ADS)

    Henry, David; Sastre-Gomez, Silvia

    2016-12-01

    In this paper we present an analysis of the mean flow velocities, and related mass transport, which are induced by certain equatorially-trapped water waves. In particular, we examine a recently-derived exact and explicit solution to the geophysical governing equations in the {β}-plane approximation at the equator which incorporates a constant underlying current.

  4. Mass measurements of short-lived isotopes in a penning trap

    SciTech Connect

    Kern, F.; Egelhof, P.; Hilberath, T.; Kalinowsky, H.; Kluge, H.h.; Kunz, K.; Schweikhard, L.; Stolzenberg, H.; Moore, R.B.; Audi, G.; and others

    1987-12-10

    A mass spectrometer has been set up at the on-line isotope separator ISOLDE at CERN/Geneva. Mass-separated radioactive ions are stored in a Penning trap. Their mass is determined by a measurement of the cyclotron frequency in the magnetic field of a superconducting magnet. A resolving power of up to 300.000 and a precision of some 10 keV were determined in case of mass measurements of neutron-deficient RB and Cs isotopes. The resonance of the isobars /sup 88/Sr and /sup 88/Rb were clearly resolved and evidence was obtained for an isomer in /sup 122/Cs.

  5. Identification of metallothionein subisoforms in HPLC using accurate mass and online sequencing by electrospray hybrid linear ion trap-orbital ion trap mass spectrometry.

    PubMed

    Mounicou, Sandra; Ouerdane, Laurent; L'Azou, Béatrice; Passagne, Isabelle; Ohayon-Courtès, Céline; Szpunar, Joanna; Lobinski, Ryszard

    2010-08-15

    A comprehensive approach to the characterization of metallothionein (MT) isoforms based on microbore HPLC with multimodal detection was developed. MTs were separated as Cd(7) complexes, detected by ICP MS and tentatively identified by molecular mass measured with 1-2 ppm accuracy using Orbital ion trap mass spectrometry. The identification was validated by accurate mass of the corresponding apo-MTs after postcolumn acidification and by their sequences acquired online by higher-energy collision dissociation MS/MS. The detection limits down to 10 fmol and 45 fmol could be obtained by ESI MS for apo- and Cd(7)-isoforms, respectively, and were lower than those obtained by ICP MS (100 fmol). The individual MT isoforms could be sequenced at levels as low as 200 fmol with the sequence coverage exceeding 90%. The approach was successfully applied to the identification of MT isoforms induced in a pig kidney cell line (LLC-PK(1)) exposed to CdS nanoparticles.

  6. Computer Modeling of an Ion Trap Mass Analyzer, Part I: Low Pressure Regime

    NASA Astrophysics Data System (ADS)

    Nikolić, Dragan; Madzunkov, Stojan M.; Darrach, Murray R.

    2015-12-01

    We present the multi-particle simulation program suite Computational Ion Trap Analyzer (CITA) designed to calculate the ion trajectories within a Paul quadrupole ion trap developed by the Jet Propulsion Laboratory (JPL). CITA uses an analytical expression of the electrodynamic field, employing up to six terms in multipole expansion and a modified velocity-Verlet method to numerically calculate ion trajectories. The computer code is multithreaded and designed to run on shared-memory architectures. CITA yields near real-time simulations with full propagation of 26 particles per second per core. As a consequence, a realistic numbers of trapped ions (100+ million) can be used and their trajectories modeled, yielding a representative prediction of mass spectrometer analysis of trace gas species. When the model is compared with experimental results conducted at low pressures using the conventional quadrupole and dipole excitation modes, there is an excellent agreement with the observed peak shapes. Owing to the program's efficiency, CITA has been used to explore regions of trapping stability that are of interest to experimental research. These results are expected to facilitate a fast and reliable modeling of ion dynamics in miniature quadrupole ion trap and improve the interpretation of observed mass spectra.

  7. Computer Modeling of an Ion Trap Mass Analyzer, Part I: Low Pressure Regime.

    PubMed

    Nikolić, Dragan; Madzunkov, Stojan M; Darrach, Murray R

    2015-12-01

    We present the multi-particle simulation program suite Computational Ion Trap Analyzer (CITA) designed to calculate the ion trajectories within a Paul quadrupole ion trap developed by the Jet Propulsion Laboratory (JPL). CITA uses an analytical expression of the electrodynamic field, employing up to six terms in multipole expansion and a modified velocity-Verlet method to numerically calculate ion trajectories. The computer code is multithreaded and designed to run on shared-memory architectures. CITA yields near real-time simulations with full propagation of 26 particles per second per core. As a consequence, a realistic numbers of trapped ions (100+ million) can be used and their trajectories modeled, yielding a representative prediction of mass spectrometer analysis of trace gas species. When the model is compared with experimental results conducted at low pressures using the conventional quadrupole and dipole excitation modes, there is an excellent agreement with the observed peak shapes. Owing to the program's efficiency, CITA has been used to explore regions of trapping stability that are of interest to experimental research. These results are expected to facilitate a fast and reliable modeling of ion dynamics in miniature quadrupole ion trap and improve the interpretation of observed mass spectra. Graphical Abstract ᅟ.

  8. EVOLUTIONARY TRACKS OF TRAPPED, ACCRETING PROTOPLANETS: THE ORIGIN OF THE OBSERVED MASS-PERIOD RELATION

    SciTech Connect

    Hasegawa, Yasuhiro; Pudritz, Ralph E. E-mail: pudritz@physics.mcmaster.ca

    2012-12-01

    The large number of observed exoplanets ({approx}>700) provides important constraints on their origin as deduced from the mass-period diagram of planets. The most surprising features in the diagram are (1) the (apparent) pileup of gas giants at a period of {approx}500 days ({approx}1 AU) and (2) the so-called mass-period relation, which indicates that planetary mass is an increasing function of orbital period. We construct the evolutionary tracks of growing planets at planet traps in evolving protoplanetary disks and show that they provide a good physical understanding of how these observational properties arise. The fundamental feature of our model is that inhomogeneities in protoplanetary disks give rise to multiple (up to 3) trapping sites for rapid (type I) planetary migration of planetary cores. The viscous evolution of disks results in the slow radial movement of the traps and their cores from large to small orbital periods. In our model, the slow inward motion of planet traps is coupled with the standard core accretion scenario for planetary growth. As planets grow, type II migration takes over. Planet growth and radial movement are ultimately stalled by the dispersal of gas disks via photoevaporation. Our model makes a number of important predictions: that distinct sub-populations of planets that reflect the properties of planet traps where they have grown result in the mass-period relation, that the presence of these sub-populations naturally explains a pileup of planets at {approx}1 AU, and that evolutionary tracks from the ice line do put planets at short periods and fill an earlier claimed {sup p}lanet desert{sup -}a sparse population of planets in the mass-semimajor axis diagram.

  9. Final Report - Advanced Ion Trap Mass Spectrometry Program - Oak Ridge National Laboratory - Sandia National Laboratory

    SciTech Connect

    Whitten, W.B.

    2002-12-18

    This report covers the three main projects that collectively comprised the Advanced Ion Trap Mass Spectrometry Program. Chapter 1 describes the direct interrogation of individual particles by laser desorption within the ion trap mass spectrometer analyzer. The goals were (1) to develop an ''intelligent trigger'' capable of distinguishing particles of biological origin from those of nonbiological origin in the background and interferent particles and (2) to explore the capability for individual particle identification. Direct interrogation of particles by laser ablation and ion trap mass spectrometry was shown to have good promise for discriminating between particles of biological origin and those of nonbiological origin, although detailed protocols and operating conditions were not worked out. A library of more than 20,000 spectra of various types of biological particles has been assembled. Methods based on multivariate analysis and on neural networks were used to discriminate between particles of biological origin and those of nonbiological origin. It was possible to discriminate between at least some species of bacteria if mass spectra of several hundred similar particles were obtained. Chapter 2 addresses the development of a new ion trap mass analyzer geometry that offers the potential for a significant increase in ion storage capacity for a given set of analyzer operating conditions. This geometry may lead to the development of smaller, lower-power field-portable ion trap mass spectrometers while retaining laboratory-scale analytical performance. A novel ion trap mass spectrometer based on toroidal ion storage geometry has been developed. The analyzer geometry is based on the edge rotation of a quadrupolar ion trap cross section into the shape of a torus. Initial performance of this device was poor, however, due to the significant contribution of nonlinear fields introduced by the rotation of the symmetric ion-trapping geometry. These nonlinear resonances

  10. Experimental validation of convection-diffusion discretisation scheme employed for computational modelling of biological mass transport

    PubMed Central

    2010-01-01

    Background The finite volume solver Fluent (Lebanon, NH, USA) is a computational fluid dynamics software employed to analyse biological mass-transport in the vasculature. A principal consideration for computational modelling of blood-side mass-transport is convection-diffusion discretisation scheme selection. Due to numerous discretisation schemes available when developing a mass-transport numerical model, the results obtained should either be validated against benchmark theoretical solutions or experimentally obtained results. Methods An idealised aneurysm model was selected for the experimental and computational mass-transport analysis of species concentration due to its well-defined recirculation region within the aneurysmal sac, allowing species concentration to vary slowly with time. The experimental results were obtained from fluid samples extracted from a glass aneurysm model, using the direct spectrophometric concentration measurement technique. The computational analysis was conducted using the four convection-diffusion discretisation schemes available to the Fluent user, including the First-Order Upwind, the Power Law, the Second-Order Upwind and the Quadratic Upstream Interpolation for Convective Kinetics (QUICK) schemes. The fluid has a diffusivity of 3.125 × 10-10 m2/s in water, resulting in a Peclet number of 2,560,000, indicating strongly convection-dominated flow. Results The discretisation scheme applied to the solution of the convection-diffusion equation, for blood-side mass-transport within the vasculature, has a significant influence on the resultant species concentration field. The First-Order Upwind and the Power Law schemes produce similar results. The Second-Order Upwind and QUICK schemes also correlate well but differ considerably from the concentration contour plots of the First-Order Upwind and Power Law schemes. The computational results were then compared to the experimental findings. An average error of 140% and 116% was demonstrated

  11. Ion trap mass spectrometry on a comet nucleus: the Ptolemy instrument and the Rosetta space mission.

    PubMed

    Todd, John F J; Barber, Simeon J; Wright, Ian P; Morgan, Geraint H; Morse, Andrew D; Sheridan, Simon; Leese, Mark R; Maynard, Jon; Evans, Suzanne T; Pillinger, Colin T; Drummond, Duncan L; Heys, Samantha C; Huq, S Ejaz; Kent, Barry J; Sawyer, Eric C; Whalley, Martin S; Waltham, Nicholas R

    2007-01-01

    In May 2014, the Rosetta spacecraft is scheduled to rendezvous with the comet Churyumov-Gerasimenko ('67P'). One of the instruments on board the 'Lander' which will descend on to the surface of the comet is a miniaturised GC/MS system that incorporates an ion trap mass spectrometer, specially developed for isotope ratio analysis. This article describes the development and optimisation of the ion trap for this unique application, and presents a summary of the range of pre-programmed experiments that will contribute to the characterisation of the solid and volatile cometary materials.

  12. A Generalized Mass Lumping Scheme for Maxwell's Wave Equation

    SciTech Connect

    Fisher, A; White, D; Rodrigue, G

    2004-01-15

    We are interested in the high order Vector Finite Element Method (VFEM) [1] solution to Maxwell's wave equation on both orthogonal and non-orthogonal meshes. This method discretizes the wave equation in the following manner, where M is the edge mass matrix and K is the edge stiffness matrix created using classical Nedelec edge elements.

  13. Fluorescence Imaging for Visualization of the Ion Cloud in a Quadrupole Ion Trap Mass Spectrometer

    NASA Astrophysics Data System (ADS)

    Talbot, Francis O.; Sciuto, Stephen V.; Jockusch, Rebecca A.

    2013-12-01

    Laser-induced fluorescence is used to visualize populations of gaseous ions stored in a quadrupole ion trap (QIT) mass spectrometer. Presented images include the first fluorescence image of molecular ions collected under conditions typically used in mass spectrometry experiments. Under these "normal" mass spectrometry conditions, the radial ( r) and axial ( z) full-width at half maxima (FWHM) of the detected ion cloud are 615 and 214 μm, respectively, corresponding to ~6 % of r 0 and ~3 % of z 0 for the QIT used. The effects on the shape and size of the ion cloud caused by varying the pressure of helium bath gas, the number of trapped ions, and the Mathieu parameter q z are visualized and discussed. When a "tickle voltage" is applied to the exit end-cap electrode, as is done in collisionally activated dissociation, a significant elongation in the axial, but not the radial, dimension of the ion cloud is apparent. Finally, using spectroscopically distinguishable fluorophores of two different m/ z values, images are presented that illustrate stratification of the ion cloud; ions of lower m/ z (higher q z ) are located in the center of the trapping region, effectively excluding higher m/ z (lower q z ) ions, which form a surrounding layer. Fluorescence images such as those presented here provide a useful reference for better understanding the collective behavior of ions in radio frequency (rf) trapping devices and how phenomena such as collisions and space-charge affect ion distribution.

  14. Identification and characterization of posttranslational modifications of proteins by MALDI ion trap mass spectrometry.

    PubMed

    Qin, J; Chait, B T

    1997-10-01

    Matrix-assisted laser desorption/ionization (MALDI) ion trap mass spectrometry is shown to be a powerful tool for the elucidation of protein modifications. Low-energy covalent bonds that originate from certain posttranslational modifications dissociate preferentially to produce characteristic mass spectrometric signatures that prove useful for the accurate, confident identification and characterization of such modifications. Because the MALDI ion trap is an authentic tandem mass spectrometer, it proves feasible to acquire secondary information to test hypotheses as to the nature and site of the putative modifications--further increasing the reliability of the tool. The method combines the advantageous features of MALDI (i.e., the ability to measure the same sample repeatedly, to measure unfractionated complex mixtures without the need for sample cleaning, and to determine peptide mixtures with subpicomole sensitivity) with the ease and the speed of the ion trap measurement. We demonstrate how the unique properties of MALDI ion trap MS can be used to address problems involving the determination of both native posttranslational modifications of proteins (e.g., disulfide mapping, glycosylation determination, and phosphorylation determination) and non-native chemical modifications of proteins (e.g., methionine oxidation and photo-cross-linking of proteins with DNA).

  15. CryoMPET: the Cryogenic Upgrade to TITAN's Mass Measurement Penning Trap

    NASA Astrophysics Data System (ADS)

    Leistenschneider, Erich; Titan Collaboration

    2016-09-01

    Atomic masses are key tools to understand the nature of nuclear forces. With the availability of beams of very exotic species, mass spectroscopy techniques have become more challenging. They need to be faster, more efficient, and still have to provide high enough precision to be of scientific value. The TITAN facility at TRIUMF has been performing precision mass measurements of radioactive nuclei for almost a decade. Its main equipment, the Measurement Penning Trap (MPET), employs the Time-of-Flight Ion Cyclotron Resonance technique to probe atomic masses of ions living as short as 10ms. A powerful way to increase the precision of such technique is to charge-breed the inspected ion, which, in order to prevent charge state decay through a typical measurement cycle, requires trap's vacuum level to be in the order of 1E-11 Torr. Otherwise, the ion's charge state will most likely decay via electron recapture from the trap's background gas. MPET is being redesigned to perform mass measurements of ions at charge states over +20. It will be integrated into a new cryogenic vacuum system and should be ready for commissioning in 2017. We will present the details of TITAN's new CryoMPET upgrade including its design concept and the status of its development.

  16. Production of high stellar-mass primordial black holes in trapped inflation

    NASA Astrophysics Data System (ADS)

    Cheng, Shu-Lin; Lee, Wolung; Ng, Kin-Wang

    2017-02-01

    Trapped inflation has been proposed to provide a successful inflation with a steep potential. We discuss the formation of primordial black holes in the trapped inflationary scenario. We show that primordial black holes are naturally produced during inflation with a steep trapping potential. In particular, we have given a recipe for an inflaton potential with which particle production can induce large non-Gaussian curvature perturbation that leads to the formation of high stellar-mass primordial black holes. These primordial black holes could be dark matter observed by the LIGO detectors through a binary black-hole merger. At the end, we have given an attempt to realize the required inflaton potential in the axion monodromy inflation, and discussed the gravitational waves sourced by the particle production.

  17. Gluon mass generation in the PT-BFM scheme

    NASA Astrophysics Data System (ADS)

    Aguilar, Arlene C.; Papavassiliou, Joannis

    2006-12-01

    In this article we study the general structure and special properties of the Schwinger-Dyson equation for the gluon propagator constructed with the pinch technique, together with the question of how to obtain infrared finite solutions, associated with the generation of an effective gluon mass. Exploiting the known all-order correspondence between the pinch technique and the background field method, we demonstrate that, contrary to the standard formulation, the non-perturbative gluon self-energy is transverse order-by-order in the dressed loop expansion, and separately for gluonic and ghost contributions. We next present a comprehensive review of several subtle issues relevant to the search of infrared finite solutions, paying particular attention to the role of the seagull graph in enforcing transversality, the necessity of introducing massless poles in the three-gluon vertex, and the incorporation of the correct renormalization group properties. In addition, we present a method for regulating the seagull-type contributions based on dimensional regularization; its applicability depends crucially on the asymptotic behavior of the solutions in the deep ultraviolet, and in particular on the anomalous dimension of the dynamically generated gluon mass. A linearized version of the truncated Schwinger-Dyson equation is derived, using a vertex that satisfies the required Ward identity and contains massless poles belonging to different Lorentz structures. The resulting integral equation is then solved numerically, the infrared and ultraviolet properties of the obtained solutions are examined in detail, and the allowed range for the effective gluon mass is determined. Various open questions and possible connections with different approaches in the literature are discussed.

  18. New mass measurement of {sup 6}Li and ppb-level systematic studies of the Penning trap mass spectrometer TITAN

    SciTech Connect

    Brodeur, M.; Ettenauer, S.; Smith, M.; Dilling, J.; Brunner, T.; Champagne, C.; Lapierre, A.; Ringle, R.; Ryjkov, V. L.; Delheij, P.; Audi, G.; Lunney, D.

    2009-10-15

    The frequency ratio of {sup 6}Li to {sup 7}Li was measured using the TITAN Penning trap mass spectrometer. This measurement resolves a 16-ppb discrepancy between the {sup 6}Li mass of 6.015 122 795(16) u from the Atomic Mass Evaluation 2003 (AME03), which is based on a measurement by JILATRAP, and the more recent measurement of 6.015 122 890(40) u by SMILETRAP. Our measurement agrees with SMILETRAP and a more precise mass value for {sup 6}Li of 6.015 122 889(26) u is presented along with systematic evaluations of the measurement uncertainties. This result makes {sup 6}Li a solid anchor point for future mass measurements on highly charged ions with m/q{approx}6.

  19. Ion/molecule reactions for detecting ammonia using miniature cylindrical ion trap mass spectrometers.

    PubMed

    Smith, Jonell N; Keil, Adam D; Noll, Robert J; Cooks, R Graham

    2011-01-07

    Gaseous ammonia, a common toxic industrial compound, is not detected readily in ion trap mass spectrometers because its molecular ion falls below the low-mass cutoff (~m/z 40) normally used when examining organic compounds. Instead, reactions of ammonia with halobenzene radical cations were used with internal electron ionization in two cylindrical ion trap miniature mass spectrometers to create a characteristic product ion by which to identify and quantify ammonia. Ammonia showed a linear response over the concentration range studied (parts per million [ppm] to parts per billion [ppb]) with limits of detection of 17 ppm and 220 ppb for experiments involving direct introduction and thermal desorption after pre-concentration, respectively. These values are comparable to ammonia's permissible exposure limit (50 ppm) and odor threshold (5 ppm). Receiver operating characteristic (ROC) curves were used to describe the method sensitivity, the probability of true positives, and the false positive rate for ammonia. A customized reaction scan function was created to select the species available for the ion/molecule reaction and set the amount of time the product ion could be accumulated in the trap. Product ion identity was verified using tandem mass spectrometry. Similar reactions with methylamine, ethylamine and the two nitriles, acetonitrile and benzonitrile, were explored.

  20. Development of a proton-transfer reaction ion trap mass spectrometer

    NASA Astrophysics Data System (ADS)

    Steeghs, M. M. L.; Sikkens, C.; Crespo, E.; Cristescu, S. M.; Harren, F. J. M.

    2007-04-01

    The development of a new proton-transfer reaction ion trap mass spectrometer (PIT-MS) from a commercially available ion trap system is presented and the advantages of using an ion trap over a quadrupole mass filter are explored. For our PIT-MS we determine the optimal kinetic energy parameter E/N (95 Td) to be significantly lower than for the more conventional proton-transfer reaction mass spectrometer (PTR-MS) (120 Td) with a quadrupole mass filter. This gives a theoretical increase in sensitivity of ~25% with respect to the generally used 120 Td. The limits of detection of the PIT-MS are still one order of magnitude higher than for the PTR-MS system, but better detection electronics are thought to improve this in the near future. The PIT-MS system is tested in a comparison with our PTR-MS on measurements of volatile compounds from an Elstar apple, where we show the time behavior and concentration determination of the PIT-MS to be reliable. In this comparison, we also show the applicability of and problems related to the use of collision induced dissociation (CID) analysis for the identification of compounds. The lower degree of fragmentation upon proton transfer is identified as an additional advantage of the use of low E/N-values.

  1. Advanced Automation for Ion Trap Mass Spectrometry-New Opportunities for Real-Time Autonomous Analysis

    NASA Technical Reports Server (NTRS)

    Palmer, Peter T.; Wong, C. M.; Salmonson, J. D.; Yost, R. A.; Griffin, T. P.; Yates, N. A.; Lawless, James G. (Technical Monitor)

    1994-01-01

    The utility of MS/MS for both target compound analysis and the structure elucidation of unknowns has been described in a number of references. A broader acceptance of this technique has not yet been realized as it requires large, complex, and costly instrumentation which has not been competitive with more conventional techniques. Recent advancements in ion trap mass spectrometry promise to change this situation. Although the ion trap's small size, sensitivity, and ability to perform multiple stages of mass spectrometry have made it eminently suitable for on-line, real-time monitoring applications, advance automation techniques are required to make these capabilities more accessible to non-experts. Towards this end we have developed custom software for the design and implementation of MS/MS experiments. This software allows the user to take full advantage of the ion trap's versatility with respect to ionization techniques, scan proxies, and ion accumulation/ejection methods. Additionally, expert system software has been developed for autonomous target compound analysis. This software has been linked to ion trap control software and a commercial data system to bring all of the steps in the analysis cycle under control of the expert system. These software development efforts and their utilization for a number of trace analysis applications will be described.

  2. The effective temperature of ions stored in a linear quadrupole ion trap mass spectrometer.

    PubMed

    Donald, William A; Khairallah, George N; O'Hair, Richard A J

    2013-06-01

    The extent of internal energy deposition into ions upon storage, radial ejection, and detection using a linear quadrupole ion trap mass spectrometer is investigated as a function of ion size (m/z 59 to 810) using seven ion-molecule thermometer reactions that have well characterized reaction entropies and enthalpies. The average effective temperatures of the reactants and products of the ion-molecule reactions, which were obtained from ion-molecule equilibrium measurements, range from 295 to 350 K and do not depend significantly on the number of trapped ions, m/z value, ion trap q z value, reaction enthalpy/entropy, or the number of vibrational degrees of freedom for the seven reactions investigated. The average of the effective temperature values obtained for all seven thermometer reactions is 318 ± 23 K, which indicates that linear quadrupole ion trap mass spectrometers can be used to study the structure(s) and reactivity of ions at near ambient temperature.

  3. Advanced Automation for Ion Trap Mass Spectrometry-New Opportunities for Real-Time Autonomous Analysis

    NASA Technical Reports Server (NTRS)

    Palmer, Peter T.; Wong, C. M.; Salmonson, J. D.; Yost, R. A.; Griffin, T. P.; Yates, N. A.; Lawless, James G. (Technical Monitor)

    1994-01-01

    The utility of MS/MS for both target compound analysis and the structure elucidation of unknowns has been described in a number of references. A broader acceptance of this technique has not yet been realized as it requires large, complex, and costly instrumentation which has not been competitive with more conventional techniques. Recent advancements in ion trap mass spectrometry promise to change this situation. Although the ion trap's small size, sensitivity, and ability to perform multiple stages of mass spectrometry have made it eminently suitable for on-line, real-time monitoring applications, advance automation techniques are required to make these capabilities more accessible to non-experts. Towards this end we have developed custom software for the design and implementation of MS/MS experiments. This software allows the user to take full advantage of the ion trap's versatility with respect to ionization techniques, scan proxies, and ion accumulation/ejection methods. Additionally, expert system software has been developed for autonomous target compound analysis. This software has been linked to ion trap control software and a commercial data system to bring all of the steps in the analysis cycle under control of the expert system. These software development efforts and their utilization for a number of trace analysis applications will be described.

  4. Linear mass scans in quadrupole ion traps using the inverse Mathieu q scan.

    PubMed

    Snyder, Dalton T; Pulliam, Christopher J; Cooks, R Graham

    2016-11-30

    Secular frequency scanning is a method of mass selectively scanning ions out of a quadrupole ion trap by linearly ramping the frequency of the resonance ejection signal through ion secular frequencies at constant rf amplitude and frequency. The method is electronically much simpler than resonance ejection but it requires a complex nonlinear calibration procedure to correlate mass-to-charge with time. A method of secular frequency scanning in quadrupole ion traps is described in which mass-to-charge is linear with time. This method, termed an "inverse Mathieu q scan", contrasts with linear frequency sweeping which requires a complex nonlinear mass calibration procedure. In the current method, mass scans are forced to be linear with time by scanning the frequency of the supplementary ac so that there is an inverse relationship between the ejected ion's Mathieu q parameter and time. In all cases, excellent mass spectral linearity is observed. The rf amplitude is shown to control both the scan range and the scan rate, whereas the ac amplitude and scan rate influence the mass resolution. The scan rate depends linearly on the rf amplitude, a unique feature of this scan. Although changes in either rf or ac amplitude affect the positions of peaks in time, they do not change the mass calibration procedure since this only requires a simple linear fit of m/z vs time. Space charge effects are shown to give rise to significant changes in resolution as well as to mass shifts. A method of secular frequency scanning which provides a linear mass scale has been demonstrated. The inverse Mathieu q scan offers a significant increase in mass range and power savings while maintaining access to linearity, paving the way for a mass spectrometer based completely on ac waveforms for ion isolation, ion activation, and ion ejection. Copyright © 2016 John Wiley & Sons, Ltd. Copyright © 2016 John Wiley & Sons, Ltd.

  5. iTRAQ reagent-based quantitative proteomic analysis on a linear ion trap mass spectrometer

    PubMed Central

    Griffin, Timothy J.; Xie, Hongwei; Bandhakavi, Sricharan; Popko, Jonathan; Mohan, Archana; Carlis, John V.; Higgins, LeeAnn

    2008-01-01

    For proteomic analysis using tandem mass spectrometry, linear ion trap instruments provide unsurpassed sensitivity, but unreliably detect low mass peptide fragments, precluding their use with iTRAQ reagent labeled samples. While the popular LTQ linear ion trap supports analyzing iTRAQ reagent labeled peptides via pulsed Q dissociation, PQD, its effectiveness remains questionable. Using a standard mixture, we found careful tuning of relative collision energy necessary for fragmenting iTRAQ reagent labeled peptides, and increasing microscan acquisition and repeat count improves quantification, but identifies somewhat fewer peptides. We developed software to calculate abundance ratios via summing reporter ion intensities across spectra matching to each protein, thereby providing maximized accuracy. Testing found results closely corresponded between analysis using optimized LTQ-PQD settings plus our software and using a Qstar instrument. Thus, we demonstrate the effectiveness of LTQ-PQD analyzing iTRAQ reagent labeled peptides, and provide guidelines for successful quantitative proteomic studies. PMID:17902639

  6. Numerical Compression Schemes for Proteomics Mass Spectrometry Data*

    PubMed Central

    Teleman, Johan; Dowsey, Andrew W.; Gonzalez-Galarza, Faviel F.; Perkins, Simon; Pratt, Brian; Röst, Hannes L.; Malmström, Lars; Malmström, Johan; Jones, Andrew R.; Deutsch, Eric W.; Levander, Fredrik

    2014-01-01

    The open XML format mzML, used for representation of MS data, is pivotal for the development of platform-independent MS analysis software. Although conversion from vendor formats to mzML must take place on a platform on which the vendor libraries are available (i.e. Windows), once mzML files have been generated, they can be used on any platform. However, the mzML format has turned out to be less efficient than vendor formats. In many cases, the naïve mzML representation is fourfold or even up to 18-fold larger compared with the original vendor file. In disk I/O limited setups, a larger data file also leads to longer processing times, which is a problem given the data production rates of modern mass spectrometers. In an attempt to reduce this problem, we here present a family of numerical compression algorithms called MS-Numpress, intended for efficient compression of MS data. To facilitate ease of adoption, the algorithms target the binary data in the mzML standard, and support in main proteomics tools is already available. Using a test set of 10 representative MS data files we demonstrate typical file size decreases of 90% when combined with traditional compression, as well as read time decreases of up to 50%. It is envisaged that these improvements will be beneficial for data handling within the MS community. PMID:24677029

  7. A New Framework to Compare Mass-Flux Schemes Within the AROME Numerical Weather Prediction Model

    NASA Astrophysics Data System (ADS)

    Riette, Sébastien; Lac, Christine

    2016-08-01

    In the Application of Research to Operations at Mesoscale (AROME) numerical weather forecast model used in operations at Météo-France, five mass-flux schemes are available to parametrize shallow convection at kilometre resolution. All but one are based on the eddy-diffusivity-mass-flux approach, and differ in entrainment/detrainment, the updraft vertical velocity equation and the closure assumption. The fifth is based on a more classical mass-flux approach. Screen-level scores obtained with these schemes show few discrepancies and are not sufficient to highlight behaviour differences. Here, we describe and use a new experimental framework, able to compare and discriminate among different schemes. For a year, daily forecast experiments were conducted over small domains centred on the five French metropolitan radio-sounding locations. Cloud base, planetary boundary-layer height and normalized vertical profiles of specific humidity, potential temperature, wind speed and cloud condensate were compared with observations, and with each other. The framework allowed the behaviour of the different schemes in and above the boundary layer to be characterized. In particular, the impact of the entrainment/detrainment formulation, closure assumption and cloud scheme were clearly visible. Differences mainly concerned the transport intensity thus allowing schemes to be separated into two groups, with stronger or weaker updrafts. In the AROME model (with all interactions and the possible existence of compensating errors), evaluation diagnostics gave the advantage to the first group.

  8. High-precision Penning-trap mass measurements of heavy xenon isotopes for nuclear structure studies

    SciTech Connect

    Neidherr, D.; Cakirli, R. B.; Audi, G.; Lunney, D.; Minaya-Ramirez, E.; Naimi, S.; Beck, D.; Herfurth, F.; Blaum, K.; Boehm, Ch.; George, S.; Breitenfeldt, M.; Rosenbusch, M.; Schweikhard, L.; Casten, R. F.; Herlert, A.; Kowalska, M.; Kellerbauer, A.; Schwarz, S.

    2009-10-15

    With the double Penning-trap mass spectrometer ISOLTRAP at ISOLDE/CERN the masses of the neutron-rich isotopes {sup 136-146}Xe were measured with a relative uncertainty of the order of 10{sup -8} to 10{sup -7}. In particular, the masses of {sup 144-146}Xe were measured for the first time. These new mass values allow one to extend calculations of the mass surface in this region. Proton-Neutron interaction strength, obtained from double differences of binding energies, relate to subtle structural effects, such as the onset of octupole correlations, the growth of collectivity, and its relation to the underlying shell model levels. In addition, they provide a test of density functional calculations.

  9. On the Masses of 28Si and the Proton Determined in a Penning Trap

    NASA Astrophysics Data System (ADS)

    Bergström, I.; Fritioff, T.; Schuch, R.; Schönfelder, J.

    The masses of the three silicon isotopes are important parameters for a re-definition of the kilogram based on atomic properties. Using the Penning trap mass spectrometer SMILETRAP at the Manne Siegbahn Laboratory the mass of 28Si was determined from the cyclotron frequencies of 28S14+, 28S13+ and 28S12+ using 12C6+, 12C5+ and 12C4+ as well as <$>{\\rm H}_2^+<$> as mass references. Since H2+ ions were used as intermediate mass reference the mass of the proton could be determined using in addition 20Ne10,9+ and 40Ar16+,14+ ions as mass references. By comparing the value of the proton mass determined this way with the accurate accepted value we could set an experimental limit of 0.35ppb for the total uncertainties in our mass determinations. A value of 27.976 926 533.9 (80) u was obtained for the mass of 28Si confirming the more accurate value obtained by the MIT-group using an entirely different method. Thus the mass of 28Si has been determined by using two very different methods agreeing within an uncertainty <0.35ppb

  10. RELATING BOTTOM QUARK MASS IN DR-BAR AND MS-BAR REGULARIZATION SCHEMES

    SciTech Connect

    Melnikov, Kirill

    2002-08-08

    The value of the bottom quark mass at Q = M{sub Z} in the {ovr DR} scheme is an important input for the analysis of supersymmetric models with a large value of tan {beta}. Conventionally, however, the running bottom quark mass extracted from experimental data is quoted in the {ovr MS} scheme at the scale Q = m{sub b}. We describe a two loop procedure for the conversion of the bottom quark mass from {ovr MS} to {ovr DR} scheme. The Particle Data Group value m{sub b}{sup {ovr MS}} (m{sub b}{sup {ovr MS}}) = 4.2 {+-} 0.2 GeV corresponds to a range of 2.65-3.03 GeV for m{sub b}{sup {ovr DR}} (M{sub Z}).

  11. High-sensitivity analysis and sequencing of peptides and proteins by quadrupole ion trap mass spectrometry.

    PubMed

    Marina, A; García, M A; Albar, J P; Yagüe, J; López de Castro, J A; Vázquez, J

    1999-01-01

    This paper describes experience with the commercially available LCQ quadrupole ion trap mass spectrometer applied to the off-line analysis of peptides and proteins. The standard front end of the electrospray probe was replaced with a micromanipulator which, with the aid of a magnifying device, allowed the use of a variety of miniaturized spraying interfaces. The low sample consumption and extended analysis times of these devices were ideally suitable to obtain improved results in terms of sensitivity and mass accuracy. This needed a careful optimization of the number of ions stored inside the trap (ion target parameter) and required spectrum averaging of many scans. A method is presented for the mathematical fitting of ZoomScan spectra to theoretical isotopic distributions, which allowed the mass determination of large peptides with more accuracy than that achieved by conventional deconvolution algorithms. A very simple on-line desalting configuration is also described which needed no external micro-high-performance liquid chromatographic pumps, and can be easily mounted using the built-in syringe delivery system of the LCQ. This set-up allowed extended analysis times of 'in-gel' protein digests in subpicomole amounts. Finally, the multiple fragmentation capabilities of the ion trap were found to be extremely useful for the analysis of peptide modifications such as phosphorylation and for sequencing individual peptides from highly complex MHC-bound peptide pools.

  12. Analysis of VX on soil particles using ion trap secondary ion mass spectrometry.

    PubMed

    Groenewold, G S; Appelhans, A D; Gresham, G L; Olson, J E; Jeffery, M; Wright, J B

    1999-07-01

    The direct detection of the nerve agent VX (methylphosphonothioic acid, S-[2-[bis(1-methylethyl)amino]ethyl] O-ethyl ester) on milligram quantities of soil particles has been achieved using ion trap secondary ion mass spectrometry (IT-SIMS). VX is highly adsorptive toward a wide variety of surfaces; this attribute makes detection using gas-phase approaches difficult but renders the compound very amenable to surface detection. An ion trap mass spectrometer, modified to perform SIMS, was employed in the present study. A primary ion beam (ReO4-) was fired on axis through the ion trap, where it impacted the soil particle samples. [VX + H]+, [VX + H]+ fragment ions, and ions from the chemical background were sputtered into the gas-phase environment of the ion trap, where they were either scanned out or isolated and fragmented (MS2). At a surface concentration of 0.4 monolayer, intact [VX + H]+, and its fragment ions, were readily observable above background. However, at lower concentrations, the secondary ion signal from VX became obscured by ions derived from the chemical background on the surface of the soil particles. MS2 analysis using the ion trap was employed to improve detection of lower concentrations of VX: detection of the 34S isotopic ion of [VX + H]+, present at a surface concentration of approximately 0.002 monolayer, was accomplished. The study afforded the opportunity to investigate the fragmentation chemistry of VX. Semiempirical calculations suggest strongly that the molecule is protonated at the N atom. Deuterium labeling showed that formation of the base peak ion (C2H4)N(i-C3H7)2+ involves transfer of the amino proton to the phosphonothioate moiety prior to, or concurrent with, C-S bond cleavage. To manage the risk associated with working with the compound, the vacuum unit of the IT-SIMS was located in a hood, connected by cables to the externally located electronics and computer.

  13. Laser-induced acoustic desorption coupled with a linear quadrupole ion trap mass spectrometer.

    PubMed

    Habicht, Steven C; Amundson, Lucas M; Duan, Penggao; Vinueza, Nelson R; Kenttämaa, Hilkka I

    2010-01-15

    In recent years, laser-induced acoustic desorption (LIAD) coupled with a Fourier transform ion cyclotron resonance (FT-ICR) mass spectrometer has been demonstrated to provide a valuable technique for the analysis of a wide variety of nonvolatile, thermally labile compounds, including analytes that could not previously be analyzed by mass spectrometry. Although FT-ICR instruments are very powerful, they are also large and expensive and, hence, mainly used as research instruments. In contrast, linear quadrupole ion trap (LQIT) mass spectrometers are common due to several qualities that make these instruments attractive for both academic and industrial settings, such as high sensitivity, large dynamic range, and experimental versatility. Further, the relatively small size of the instruments, comparatively low cost, and the lack of a magnetic field provide some distinct advantages over FT-ICR instruments. Hence, we have coupled the LIAD technique with a commercial LQIT, the Thermo Fischer Scientific LTQ mass spectrometer. The LQIT was modified for a LIAD probe by outfitting the removable back plate of the instrument with a 6 in. ConFlat flange (CFF) port, gate valve, and sample lock. Reagent ions were created using the LQIT's atmospheric pressure ionization source and trapped in the mass analyzer for up to 10 s to allow chemical ionization reactions with the neutral molecules desorbed via LIAD. These initial experiments focused on demonstrating the feasibility of performing LIAD in the LQIT. Hence, the results are compared to those obtained using an FT-ICR mass spectrometer. Despite the lower efficiency in the transfer of desorbed neutral molecules into the ion trap, and the smaller maximum number of available laser pulses, the intrinsically higher sensitivity of the LQIT resulted in a higher sensitivity relative to the FT-ICR.

  14. Mass analysis of mobility-selected ion populations using dual gate, ion mobility, quadrupole ion trap mass spectrometry.

    PubMed

    Clowers, Brian H; Hill, Herbert H

    2005-09-15

    An electrospray ionization, dual gate, ion mobility, quadrupole ion trap mass spectrometer (ESI-DG-IM-QIT-MS) was constructed and evaluated for its ability to select mobility-filtered ions prior to mass analysis. While modification of the common signal-averaged ion mobility experiment was required, no modifications to the QIT were necessary. The dual gate scanning mode of operation was used to acquire mobility spectra, whereas the single mobility monitoring experiment selectively filtered ions for concentration and subsequent fragmentation within the QIT. Ion mobility separation of positively charged peptides and negatively charged carbohydrates, followed by MS fragmentation, was demonstrated. For a 1-min acquisition time, it was possible to obtain complete de novo sequence information for the examined peptides. Fragmentation of the negative carbohydrate chlorine adducts yielded ions characteristic of cross-ring and glycosidic bond cleavage. Previous unions of atmospheric pressure ion mobility and mass spectrometry have been limited in their ability to reproducibly obtain MSn data for mobility separation ions. The union of high-pressure ion mobility with quadrupole ion trap mass spectrometry presents the unique opportunity to obtain more detailed information regarding the chemistries of gas-phase ions.

  15. Utility of Higher Harmonics in Electrospray Ionization Fourier Transform Electrostatic Linear Ion Trap Mass Spectrometry.

    PubMed

    Dziekonski, Eric T; Johnson, Joshua T; McLuckey, Scott A

    2017-03-30

    Mass resolution (M/ΔM fwhm) is observed to linearly increase with harmonic order in a Fourier transform electrostatic linear ion trap (ELIT) mass spectrometer. This behavior was predicted by Grosshans and Marshall for frequency-multiple detection in a Fourier transform ion cyclotron resonance mass spectrometer only for situations when the prominent mechanism for signal decay is ion ejection from the trap. As the analyzer pressure in our ELIT chamber is relatively high, such that collisional scattering and collision-induced dissociation are expected to underlie much of the ion loss, we sought to explore the relationship between harmonic order and mass resolution. Mass resolutions of 36 900 (fundamental), 75 850 (2nd harmonic), and 108 200 (3rd harmonic) were obtained for GdO(+) (avg. m/z 173.919) with a transient length of 300 ms. To demonstrate that the mass resolution was truly increasing with harmonic order, the unresolved isotopes at the fundamental distribution of cytochrome c(+8) (m/z ∼ 1549) were nearly baseline, resolved at the third harmonic (mass resolution ≈ 23 000) with a transient length of only 200 ms. This experiment demonstrates that, when the ion density is sufficiently low, ions with frequency differences of less than 4 Hz remain uncoalesced. Higher harmonics can be used to increase the effective mass resolution for a fixed transient length and thereby may enable the resolution of closely spaced masses, determination of a protein ion's charge state, and study of the onset of peak coalescence when the resolution at the fundamental frequency is insufficient.

  16. Improved Miniaturized Linear Ion Trap Mass Spectrometer Using Lithographically Patterned Plates and Tapered Ejection Slit

    NASA Astrophysics Data System (ADS)

    Tian, Yuan; Decker, Trevor K.; McClellan, Joshua S.; Bennett, Linsey; Li, Ailin; De la Cruz, Abraham; Andrews, Derek; Lammert, Stephen A.; Hawkins, Aaron R.; Austin, Daniel E.

    2017-08-01

    We present a new two-plate linear ion trap mass spectrometer that overcomes both performance-based and miniaturization-related issues with prior designs. Borosilicate glass substrates are patterned with aluminum electrodes on one side and wire-bonded to printed circuit boards. Ions are trapped in the space between two such plates. Tapered ejection slits in each glass plate eliminate issues with charge build-up within the ejection slit and with blocking of ions that are ejected at off-nominal angles. The tapered slit allows miniaturization of the trap features (electrode size, slit width) needed for further reduction of trap size while allowing the use of substrates that are still thick enough to provide ruggedness during handling, assembly, and in-field applications. Plate spacing was optimized during operation using a motorized translation stage. A scan rate of 2300 Th/s with a sample mixture of toluene and deuterated toluene (D8) and xylenes (a mixture of o-, m-, p-) showed narrowest peak widths of 0.33 Th (FWHM). [Figure not available: see fulltext.

  17. Improved Miniaturized Linear Ion Trap Mass Spectrometer Using Lithographically Patterned Plates and Tapered Ejection Slit.

    PubMed

    Tian, Yuan; Decker, Trevor K; McClellan, Joshua S; Bennett, Linsey; Li, Ailin; De la Cruz, Abraham; Andrews, Derek; Lammert, Stephen A; Hawkins, Aaron R; Austin, Daniel E

    2017-08-23

    We present a new two-plate linear ion trap mass spectrometer that overcomes both performance-based and miniaturization-related issues with prior designs. Borosilicate glass substrates are patterned with aluminum electrodes on one side and wire-bonded to printed circuit boards. Ions are trapped in the space between two such plates. Tapered ejection slits in each glass plate eliminate issues with charge build-up within the ejection slit and with blocking of ions that are ejected at off-nominal angles. The tapered slit allows miniaturization of the trap features (electrode size, slit width) needed for further reduction of trap size while allowing the use of substrates that are still thick enough to provide ruggedness during handling, assembly, and in-field applications. Plate spacing was optimized during operation using a motorized translation stage. A scan rate of 2300 Th/s with a sample mixture of toluene and deuterated toluene (D8) and xylenes (a mixture of o-, m-, p-) showed narrowest peak widths of 0.33 Th (FWHM). Graphical Abstract ᅟ.

  18. Infrared Multiphoton Dissociation of Peptide Cations in a Dual Pressure Linear Ion Trap Mass Spectrometer

    PubMed Central

    Gardner, Myles W.; Smith, Suncerae I.; Ledvina, Aaron R.; Madsen, James A.; Coon, Joshua J.; Schwartz, Jae C.; Stafford, George C.; Brodbelt, Jennifer S.

    2009-01-01

    A dual pressure linear ion trap mass spectrometer was modified to permit infrared multiphoton dissociation (IRMPD) in each of the two cells - the first a high pressure cell operated at nominally 5 × 10-3 Torr and the second a low pressure cell operated at nominally 3 × 10-4 Torr. When IRMPD was performed in the high pressure cell, most peptide ions did not undergo significant photodissociation; however, in the low pressure cell peptide cations were efficiently dissociated with less than 25 ms of IR irradiation regardless of charge state. IRMPD of peptide cations allowed the detection of low m/z product ions including the y1 fragments and immonium ions which are not typically observed by ion trap collision induced dissociation (CID). Photodissociation efficiencies of ~100% and MS/MS (tandem mass spectrometry) efficiencies of greater than 60% were observed for both multiply and singly protonated peptides. In general, higher sequence coverage of peptides was obtained using IRMPD over CID. Further, greater than 90% of the product ion current in the IRMPD mass spectra of doubly charged peptide ions was composed of singly charged product ions compared to the CID mass spectra in which the abundances of the multiply and singly charged product ions were equally divided. Highly charged primary product ions also underwent efficient photodissociation to yield singly charged secondary product ions, thus simplifying the IRMPD product ion mass spectra. PMID:19739654

  19. Infrared multiphoton dissociation of peptide cations in a dual pressure linear ion trap mass spectrometer.

    PubMed

    Gardner, Myles W; Smith, Suncerae I; Ledvina, Aaron R; Madsen, James A; Coon, Joshua J; Schwartz, Jae C; Stafford, George C; Brodbelt, Jennifer S

    2009-10-01

    A dual pressure linear ion trap mass spectrometer was modified to permit infrared multiphoton dissociation (IRMPD) in each of the two cells-the first a high pressure cell operated at nominally 5 x 10(-3) Torr and the second a low pressure cell operated at nominally 3 x 10(-4) Torr. When IRMPD was performed in the high pressure cell, most peptide ions did not undergo significant photodissociation; however, in the low pressure cell peptide cations were efficiently dissociated with less than 25 ms of IR irradiation regardless of charge state. IRMPD of peptide cations allowed the detection of low m/z product ions including the y(1) fragments and immonium ions which are not typically observed by ion trap collision induced dissociation (CID). Photodissociation efficiencies of approximately 100% and MS/MS (tandem mass spectrometry) efficiencies of greater than 60% were observed for both multiply and singly protonated peptides. In general, higher sequence coverage of peptides was obtained using IRMPD over CID. Further, greater than 90% of the product ion current in the IRMPD mass spectra of doubly charged peptide ions was composed of singly charged product ions compared to the CID mass spectra in which the abundances of the multiply and singly charged product ions were equally divided. Highly charged primary product ions also underwent efficient photodissociation to yield singly charged secondary product ions, thus simplifying the IRMPD product ion mass spectra.

  20. HYMACS, a hybrid mass flux convection scheme for use in non-hydrostatic NWP models

    NASA Astrophysics Data System (ADS)

    Küll, V.; Bott, A.

    2009-04-01

    Modelling of convection is a challenging task in numerical weather prediction (NWP). On the one hand, a proper forecast is needed to predict severe weather events related to convection. On the other hand, the parameterization of convection may become problematic at small grid sizes as used in contemporary operational NWP models. Classical mass flux convection schemes assume grid sizes much larger than the scale of the convective circulation. Thus, the convective mass transport is closed in the local grid column and no net mass transport occurs on the grid scale. In NWP models with grid sizes of a few kilometers, where convection is partially resolved, this approach leads to a conceptual problem. We therefore propose a hybrid mass flux convection scheme (HYMACS), in which only the small scale convective up- and downdrafts are parameterized, whereas the treatment of the larger scale environmental subsidence is left to the grid scale equations. Different to the classical schemes, HYMACS produces a net convective mass flux exerting pressure gradient forces to the grid scale model. We will present real cases of different meteorological situations simulated with HYMACS. As the hosting model we choose the operational NWP model of the German Meteorological Service. The results will be compared to those of classical convection schemes and observational data. We will also discuss the influence of parameterization details in HYMACS and of the choosen grid size.

  1. Prospects for the control of apple leaf midge Dasineura mali (Diptera: Cecidomyiidae) by mass trapping with pheromone lures.

    PubMed

    Lo, Peter L; Walker, James T S; Suckling, D Max

    2015-07-01

    Apple leaf midge, Dasineura mali (Kieffer), poses quarantine issues for some apple export markets because larvae occasionally pupate in the stem end and calyx of fruit. Pheromone-baited oil-filled containers were used in 1 ha orchard plots to trap adult male D. mali in order to test the potential for mass trapping to reduce populations. Mass-trapped plots had 97% fewer adult males in pheromone traps and 48% fewer larvae per shoot in the second D. mali generation compared with untreated areas. Oil traps caught on average 900 000 D. mali per plot over 11 weeks during the second and third generations. Catches averaged 9200 per trap at plot corners. By comparison, catches were 51% lower 10-25 m away along borders, 80% lower at the midpoint of borders and 95% lower >7 m from plot edges. Fruit infestation was low (four out of 8000 apples). The attractiveness of the pheromone, monophagous habit and low mobility of D. mali enhance the prospects for successful mass trapping. Countering this are high populations, multivoltinism and aspects of mating behaviour. Mass trapping would probably have been more effective had it been in place season long and conducted over successive years. It needs refinements and more study before becoming a feasible control option for D. mali. © 2014 Society of Chemical Industry.

  2. Identification of phosphorylation sites in proteins by nanospray quadrupole ion trap mass spectrometry.

    PubMed

    Ogueta, S; Rogado, R; Marina, A; Moreno, F; Redondo, J M; Vázquez, J

    2000-04-01

    A method is described for identifying serine phosphorylation sites in proteins, based on conventional (32)P labeling followed by electrophoretic separation, 'in-gel' digestion with a protease, peptide extraction, reversed-phase high-performance liquid chromatographic separation and collection and off-line analysis of the radioactive fractions by nanospray ion trap mass spectrometry. The method was successfully applied to the identification of three phosphorylation sites in two proteins which were subjected to in vitro phosphorylation under physiological conditions. Different combinations of the various scanning modes of the ion trap, including high-resolution, multiple subfragmentation (or MS(n)) and fast scan analysis, were employed to identify the phosphopeptides, determine their sequence and localize the exact site of phosphorylation. 'Blind' fragmentation using fast scans was used to analyze a phosphopeptide which was undetectable in other scanning modes. The sequence, phosphorylation site and double cysteine modification of the potassium adduct of a peptide containing 35 residues were also determined by multiple fragmentation. The results not only support the validity of the proposed method for routine identification of phosphorylation sites, but also demonstrate the exceptional capability of off-line ion trap mass spectrometry in combination with nanospray ionization for performing very detailed studies on the structure of peptides. Copyright 2000 John Wiley & Sons, Ltd.

  3. Measurement of Atmospheric Isoprene Concentrations using an Automated Cylindrical Ion Trap Mass Spectrometer

    NASA Astrophysics Data System (ADS)

    Edwards, G. D.; Shepson, P. B.; Grossenbacher, J. W.; Wells, J. M.; Patterson, G.; Barkett, D. J.

    2005-12-01

    Volatile organic compounds (VOCs) released from the biosphere have been shown to substantially influence both ozone and aerosol chemistry. However, field instruments for the detection of these trace gases are often limited by instrument portability and the ability to distinguish compounds of interest from background or other interfering compounds. We have developed an automated sampling system that is coupled to a lightweight, low power cylindrical ion trap mass spectrometer. This instrument was used for high frequency isoprene measurements at a recent field campaign at the University of Michigan Biological Station PROPHET lab. The inlet uses a sample loop and 6-port valves to trap ambient air samples without the aid of cryogens. VOCs are preconcentrated by sampling directly into a pre-cooled capillary column that is then heated by moving the column to a pre-heated region to obtain rapid separation of isoprene from other species. Isoprene eluting from the end of the column is then introduced to the mass spectrometer. The commercially available cylindrical ion trap (Minotaur 400) interfaced with our preconcentrator yields limits of detection of <80 ppt. The data obtained during the PROPHET 2005 campaign suggest the new inlet system, when coupled with the Minotaur 400 detector provides a feasible field instrument for the fast and accurate evaluation of trace gases over a variety of atmospheric conditions.

  4. Correlation between y-Type Ions Observed in Ion Trap and Triple Quadrupole Mass Spectrometers

    PubMed Central

    Sherwood, Carly A.; Eastham, Ashley; Lee, Lik Wee; Risler, Jenni; Vitek, Olga; Martin, Daniel B.

    2009-01-01

    Multiple reaction monitoring mass spectrometry (MRM-MS) is a technique for high-sensitivity targeted analysis. In proteomics, MRM-MS can be used to monitor and quantify a peptide based on the production of expected fragment peaks from the selected peptide precursor ion. The choice of which fragment ions to monitor in order to achieve maximum sensitivity in MRM-MS can potentially be guided by existing MS/MS spectra. However, because the majority of discovery experiments are performed on ion trap platforms, there is concern in the field regarding the generalizability of these spectra to MRM-MS on a triple quadrupole instrument. In light of this concern, many operators perform an optimization step to determine the most intense fragments for a target peptide on a triple quadrupole mass spectrometer. We have addressed this issue by targeting, on a triple quadrupole, the top six y-ion peaks from ion trap-derived consensus library spectra for 258 doubly charged peptides from three different sample sets and quantifying the observed elution curves. This analysis revealed a strong correlation between the y-ion peak rank order and relative intensity across platforms. This suggests that y-type ions obtained from ion trap-based library spectra are well-suited for generating MRM-MS assays for triple quadrupoles and that optimization is not required for each target peptide. PMID:19603825

  5. Correlation between y-type ions observed in ion trap and triple quadrupole mass spectrometers.

    PubMed

    Sherwood, Carly A; Eastham, Ashley; Lee, Lik Wee; Risler, Jenni; Vitek, Olga; Martin, Daniel B

    2009-09-01

    Multiple reaction monitoring mass spectrometry (MRM-MS) is a technique for high-sensitivity targeted analysis. In proteomics, MRM-MS can be used to monitor and quantify a peptide based on the production of expected fragment peaks from the selected peptide precursor ion. The choice of which fragment ions to monitor in order to achieve maximum sensitivity in MRM-MS can potentially be guided by existing MS/MS spectra. However, because the majority of discovery experiments are performed on ion trap platforms, there is concern in the field regarding the generalizability of these spectra to MRM-MS on a triple quadrupole instrument. In light of this concern, many operators perform an optimization step to determine the most intense fragments for a target peptide on a triple quadrupole mass spectrometer. We have addressed this issue by targeting, on a triple quadrupole, the top six y-ion peaks from ion trap-derived consensus library spectra for 258 doubly charged peptides from three different sample sets and quantifying the observed elution curves. This analysis revealed a strong correlation between the y-ion peak rank order and relative intensity across platforms. This suggests that y-type ions obtained from ion trap-based library spectra are well-suited for generating MRM-MS assays for triple quadrupoles and that optimization is not required for each target peptide.

  6. Effect of ion-neutral collision mechanism on the trapped-ion equation of motion: a new mass spectral line shape for high-mass trapped ions

    NASA Astrophysics Data System (ADS)

    Guan, Shenheng; Li, Guo-Zhong; Marshall, Alan G.

    1997-11-01

    The decay amplitude envelope of an ICR time-domain signal determines its corresponding Fourier transform mass spectral line shape. The commonly accepted FT-ICR frequency-domain unapodized Lorentzian spectral line shape originates from the Langevin ion-neutral collision model, in which an ion is treated as a point charge that induces an electric dipole moment in a neutral collision partner. The Langevin model provides a good description of reactions of low-energy collisions of low-mass positive ions with neutrals. However, the Langevin model is inappropriate for collisions of high-mass gas-phase biopolymer ions with low-mass neutrals. Here, we examine ion trajectories for both Langevin and hard-sphere ion-neutral collision models. For the Langevin model, collision frequency is independent of ion speed, leading to a linear differential equation of ion motion with a frictional damping term linearly proportional to ion velocity. For the hard-sphere model, collision frequency is proportional to ion speed and the frictional damping term is proportional to the square of ion velocity. We show that the resulting (non-linear) equation of ion motion leads to a non-exponential time-domain ICR signal whose amplitude envelope has the form, 1/(1 + [sigma]t), in which [sigma] is a constant. Dispersion-vs-absorption (DISPA) line shape analysis reveals that the `hard-sphere' spectral line shape resembles that of overlaid narrow and broad Lorentzians. We discuss several important implications of the new `hard-sphere' line shape for ICR spectral analysis, ICR signal processing, collision-based ion activation, and ion axialization. Finally, in the hard-sphere limit, a non-linear frictional damping term will also apply to ions in a Paul trap.

  7. 40 CFR 75.15 - Special provisions for measuring Hg mass emissions using the excepted sorbent trap monitoring...

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... mass emissions using the excepted sorbent trap monitoring methodology. 75.15 Section 75.15 Protection... EMISSION MONITORING Monitoring Provisions § 75.15 Special provisions for measuring Hg mass emissions using... Federal Hg mass emission reduction program that adopts the provisions of subpart I of this part, if the...

  8. Characterization of impurities in spiramycin by liquid chromatography/ion trap mass spectrometry.

    PubMed

    Pendela, Murali; Govaerts, Cindy; Diana, José; Hoogmartens, Jos; Van Schepdael, Ann; Adams, Erwin

    2007-01-01

    A reversed-phase liquid chromatography/tandem mass spectrometry method is described for the investigation of spiramycin and related substances. The method uses an XTerra C18 column (250 x 4.6 mm i.d.), 5 microm, and a mobile phase consisting of acetonitrile, methanol, water and ammonium acetate solution, pH 6.5. Mass spectral data were acquired on an LCQ ion trap mass spectrometer equipped with atmospheric pressure chemical ionization (APCI) operated in the positive ion mode. Using this method, the fragmentation behavior of spiramycin and its related substances was studied and the unknown impurities occurring in commercial samples were investigated. In total 17 compounds were identified, among which three reported as specified impurities in the European Pharmacopoeia. The other impurities showed mainly a modification in the forosamine sugar or in the substituent at C-3 and C-6 positions. In one impurity, the mycarose sugar is absent.

  9. Improved Scheme for Modeling Mass Transfer between Fracture and Matrix Continua with Particle Tracking Method

    SciTech Connect

    L. Pan; Y. Seol; G. Bodvarsson

    2004-04-29

    The dual-continuum random-walk particle tracking approach is an attractive simulation method for simulating transport in a fractured porous medium. In order to be truly successful for such a model, however, the key issue is to properly simulate the mass transfer between the fracture and matrix continua. In a recent paper, Pan and Bodvarsson (2002) proposed an improved scheme for simulating fracture-matrix mass transfer, by introducing the concept of activity range into the calculation of fracture-matrix particle-transfer probability. By comparing with analytical solutions, they showed that their scheme successfully captured the transient diffusion depth into the matrix without any additional subgrid (matrix) cells. This technical note presents an expansion of their scheme to cases in which significant water flow through the fracture-matrix interface exists. The dual-continuum particle tracker with this new scheme was found to be as accurate as a numerical model using a more detailed grid. The improved scheme can be readily incorporated into the existing particle-tracking code, while still maintaining the advantage of needing no additional matrix cells to capture transient features of particle penetration into the matrix.

  10. Multiview-based computer-aided detection scheme for breast masses

    SciTech Connect

    Zheng Bin; Leader, Joseph K.; Abrams, Gordon S.; Lu, Amy H.; Wallace, Luisa P.; Maitz, Glenn S.; Gur, David

    2006-09-15

    In this study, we developed and tested a new multiview-based computer-aided detection (CAD) scheme that aims to maintain the same case-based sensitivity level as a single-image-based scheme while substantially increasing the number of masses being detected on both ipsilateral views. An image database of 450 four-view examinations (1800 images) was assembled. In this database, 250 cases depicted malignant masses, of which 236 masses were visible on both views and 14 masses were visible only on one view. First, we detected suspected mass regions depicted on each image in the database using a single-image-based CAD. For each identified region (with detection score{>=}0.55), we then identified a matching strip of interest on the ipsilateral view based on the projected distance to the nipple along the centerline. By lowering CAD operating threshold inside the matching strip, we searched for a region located inside the strip and paired it with the original region. A multifeature-based artificial neural network scored the likelihood of the paired ''matched'' regions representing true-positive masses. All single (unmatched) regions except for those either with very high detection scores ({>=}0.85) or those located near the chest wall that cannot be matched on the other view were discarded. The original single-image-based CAD scheme detected 186 masses (74.4% case-based sensitivity) and 593 false-positive regions. Of the 186 identified masses, 91 were detected on two views (48.9%) and 95 were detected only on one view (51.1%). Of the false-positive detections, 54 were paired on the ipsilateral view inside the corresponding matching strips and the remaining 485 were not, which represented 539 case-based false-positive detections (0.3 per image). Applying the multiview-based CAD scheme, the same case-based sensitivity was maintained while cueing 169 of 186 masses (90.9%) on both views and at the same time reducing the case-based false-positive detection rate by 23.7% (from

  11. Evaluation of rock mass classification schemes: a case study from the Bowen Basin, Australia

    NASA Astrophysics Data System (ADS)

    Brook, Martin; Hebblewhite, Bruce; Mitra, Rudrajit

    2016-04-01

    The development of an accurate engineering geological model and adequate knowledge of spatial variation in rock mass conditions are important prerequisites for slope stability analyses, tunnel design, mine planning and risk management. Rock mass classification schemes such as Rock Mass Rating (RMR), Coal Mine Roof Rating (CMRR), Q-system and Roof Strength Index (RSI) have been used for a range of engineering geological applications, including transport tunnels, "hard rock" mining and underground and open-cut coal mines. Often, rock mass classification schemes have been evaluated on subaerial exposures, where weathering has affected joint characteristics and intact strength. In contrast, the focus of this evaluation of the above classification schemes is an underground coal mine in the Bowen Basin, central Queensland, Australia, 15 km east of the town of Moranbah. Rock mass classification was undertaken at 68 sites across the mine. Both the target coal seam and overlying rock show marked spatial variability in terms of RMR, CMRR and Q, but RSI showed limited sensitivity to changes in rock mass condition. Relationships were developed between different parameters with varying degrees of success. A mine-wide analysis of faulting was undertaken, and compared with in situ stress field and local-scale measurements of joint and cleat. While there are no unequivocal relationships between rock mass classification parameters and faulting, a central graben zone shows heterogeneous rock mass properties. The corollary is that if geological features can be accurately defined by remote sensing technologies, then this can assist in predicting rock mass conditions and risk management ahead of development and construction.

  12. Estimation of trapped mass by in-cylinder pressure resonance in HCCI engines

    NASA Astrophysics Data System (ADS)

    Luján, José Manuel; Guardiola, Carlos; Pla, Benjamín; Bares, Pau

    2016-01-01

    High pressure gradients at homogeneous charge compression ignition (HCCI) engines heavily excite the pressure resonance. The pressure resonant frequency depends on speed of sound in the cylinder, and thus on the bulk gas temperature. Present paper profits this relation estimating the trapped mass inside the cylinder. In contrast to other estimation methods in the literature, the presented method is based on the trace of the in-cylinder pressure during the cycle; therefore, it permits a cycle-to-cycle mass estimation, and avoids errors associated with other assumptions, such as heat transfer during compression or initial temperature of the in-cylinder gases. The proposed strategy only needs the pressure signal, a volume estimation and a composition assumption to obtain several trapped mass estimates during one cycle. These estimates can be later combined for providing an error estimate of the measurement, with the assumption of negligible blow-by. The method is demonstrated in two HCCI engines of different size, showing good performance in steady operation and presenting great potential to control transient operation.

  13. Dynamic collision-induced dissociation of peptides in a quadrupole ion trap mass spectrometer.

    PubMed

    Collin, Olivier L; Beier, Matthias; Jackson, Glen P

    2007-07-15

    The fragmentation of natural peptides using dynamic collision-induced dissociation (DCID), a novel fragmentation method for quadrupole ion traps, is demonstrated. Using leucine enkephalin as a diagnostic molecule, the fragmentation efficiencies and energetics of DCID are compared with other methods of collisional activation in ion traps such as conventional on-resonance excitation and high-amplitude short-time excitation (HASTE). A typical fragmentation efficiency of approximately 20% is achieved for DCID, which is significantly lower than conventional CID (maximum near 80%). Tandem mass spectra of two other peptides, substance P and oxidized insulin alpha-chain, demonstrate that product ion spectra for DCID are comparable to conventional or HASTE CID. Because DCID achieves fragmentation during the standard mass acquisition scan, no extra time is necessary for on-resonance excitation or product ion collection, so analysis times are reduced by a minimum of 10-15% depending on the scanning conditions. DCID therefore offers more tandem mass spectra per second than conventional methods of collisional activation, which could be highly advantageous for bottom-up proteomics separations.

  14. High-resolution methods for preserving the sum of mass fractions: improved χ-scheme and an alternative

    SciTech Connect

    Syamial, Madhava; Benyahia, Sofiane

    2013-11-20

    When high resolution convection schemes are used for discretizing chemical species mass balance equations, the mass fractions are not guaranteed to add to one. We show that a proposed remedy called χ-scheme (Darwish and Moukalled, Comput.Methods Appl.Mech. Engrg. 192 (2003): 1711) will degrade to a diffusive first-order scheme when a chemical species vanishes from the mixture, for example, because of chemical reactions. We propose an improvement to the χ-scheme to overcome this problem. Furthermore, a computationally efficient alternative scheme is proposed and evaluated with several examples, to quantify the improvements in the accuracy and the computational time.

  15. Development of a fully automatic scheme for detection of masses in whole breast ultrasound images.

    PubMed

    Ikedo, Yuji; Fukuoka, Daisuke; Hara, Takeshi; Fujita, Hiroshi; Takada, Etsuo; Endo, Tokiko; Morita, Takako

    2007-11-01

    Ultrasonography has been used for breast cancer screening in Japan. Screening using a conventional hand-held probe is operator dependent and thus it is possible that some areas of the breast may not be scanned. To overcome such problems, a mechanical whole breast ultrasound (US) scanner has been proposed and developed for screening purposes. However, another issue is that radiologists might tire while interpreting all images in a large-volume screening; this increases the likelihood that masses may remain undetected. Therefore, the aim of this study is to develop a fully automatic scheme for the detection of masses in whole breast US images in order to assist the interpretations of radiologists and potentially improve the screening accuracy. The authors database comprised 109 whole breast US imagoes, which include 36 masses (16 malignant masses, 5 fibroadenomas, and 15 cysts). A whole breast US image with 84 slice images (interval between two slice images: 2 mm) was obtained by the ASU-1004 US scanner (ALOKA Co., Ltd., Japan). The feature based on the edge directions in each slice and a method for subtracting between the slice images were used for the detection of masses in the authors proposed scheme. The Canny edge detector was applied to detect edges in US images; these edges were classified as near-vertical edges or near-horizontal edges using a morphological method. The positions of mass candidates were located using the near-vertical edges as a cue. Then, the located positions were segmented by the watershed algorithm and mass candidate regions were detected using the segmented regions and the low-density regions extracted by the slice subtraction method. For the removal of false positives (FPs), rule-based schemes and a quadratic discriminant analysis were applied for the distribution between masses and FPs. As a result, the sensitivity of the authors scheme for the detection of masses was 80.6% (29/36) with 3.8 FPs per whole breast image. The authors scheme

  16. Performance Evaluation of a Dual Linear Ion Trap-Fourier Transform Ion Cyclotron Resonance Mass Spectrometer for Proteomics Research

    PubMed Central

    Weisbrod, Chad R.; Hoopmann, Michael R.; Senko, Michael W.; Bruce, James E.

    2014-01-01

    A novel dual cell linear ion trap Fourier transform ion cyclotron resonance mass spectrometer (FT-ICR MS) and its performance characteristics are reported. A linear ion trap-Fourier transform ion cyclotron resonance mass spectrometer has been modified to incorporate a LTQ-Velos mass spectrometer. This modified instrument features efficient ion accumulation and fast MS/MS acquisition capabilities of dual cell linear RF ion trap instruments coupled to the high mass accuracy, resolution, and dynamic range of a FT-ICR for improved proteomic coverage. The ion accumulation efficiency is demonstrated to be an order of magnitude greater than that observed with LTQ-FT Ultra instrumentation. The proteome coverage with yeast was shown to increase over the previous instrument generation by 50% (100% increase on the peptide level). In addition, many lower abundance level yeast proteins were only detected with this modified instrument. This novel configuration also enables beam type CID fragmentation using a dual cell RF ion trap mass spectrometer. This technique involves accelerating ions between traps while applying an elevated DC offset to one of the traps to accelerate ions and induce fragmentation. This instrument design may serve as a useful option for labs currently considering purchasing new instrumentation or upgrading existing instruments. PMID:23590889

  17. Central ring electrode for trapping and excitation/detection in Fourier transform ion cyclotron resonance mass spectrometry.

    PubMed

    Ostrander, C M; Arkin, C R; Laude, D

    2001-01-01

    The use of a central trapping ring electrode for Fourier transform ion cyclotron resonance (FTICR) mass spectrometry is demonstrated. Ions are trapped with an oppositely biased static potential superimposed on both the excite and detect electrodes and maintained throughout the experiment, including the application of a dipolar rf excite waveform and the image current ion detection event. The use of a central trapping electrode for FTICR coupled with an open cell design retains the advantages of high ion throughput and gas conductance, while simplifying the electrode geometry and reducing the overall dimensions of the cell. This allows the central trapping electrode to be of utility in volume-limited vacuum chambers including FTICR instrument miniaturization. Presented here are the preliminary experimental results using the central trapping electrode as an FTICR cell in which the excitation and detection electrodes also create a trapping depression to constrain the z-axis motion of the ions. The cell overcomes the principle limitation of an earlier single trapping electrode design by producing a 91% effective potential well depth compared to 19% for the single trapping electrode and 33% for standard open cells. This allows the central trapping electrode configuration to achieve an order of magnitude improvement in ion capacity compared to more conventional open cell designs.

  18. Mode-shape-based mass detection scheme using mechanically diverse, indirectly coupled microresonator arrays

    NASA Astrophysics Data System (ADS)

    Glean, Aldo A.; Judge, John A.; Vignola, Joseph F.; Ryan, Teresa J.

    2015-02-01

    We explore vibration localization in arrays of microresonators used for ultrasensitive mass detection and describe an algorithm for identifying the location and amount of added mass using measurements of a vibration mode of the system. For a set of sensing elements coupled through a common shuttle mass, the inter-element coupling is shown to be proportional to the ratio of the element masses to the shuttle mass and to vary with the frequency mistuning between any two sensing elements. When any two elements have sufficiently similar frequencies, mass adsorption on one element can result in measurable changes to multiple modes of the system. We describe the effects on system frequencies and mode shapes due to added mass, in terms of mass ratio and frequency spacing. In cases in which modes are not fully localized, frequency-shift-based mass detection methods may give ambiguous results. The mode-shape-based detection algorithm presented uses a single measured mode shape and corresponding natural frequency to identify the location and amount of added mass. Mass detection in the presence of measurement noise is numerically simulated using a ten element sensor array. The accuracy of the detection scheme is shown to depend on the amplitude with which each element vibrates in the chosen mode.

  19. MOMA and other next-generation ion trap mass spectrometers for planetary exploration

    NASA Astrophysics Data System (ADS)

    Arevalo, R. D., Jr.; Brinckerhoff, W. B.; Getty, S.; Mahaffy, P. R.; van Amerom, F. H. W.; Danell, R.; Pinnick, V. T.; Li, X.; Grubisic, A.; Southard, A. E.; Hovmand, L.; Cottin, H.; Makarov, A.

    2016-12-01

    Since the 1970's, quadrupole mass spectrometer (QMS) systems have served as low-risk, cost-efficient means to explore the inner and outer reaches of the solar system. These legacy instruments have interrogated the compositions of the lunar exosphere (LADEE), surface materials on Mars (MSL), and the atmospheres of Venus (Pioneer Venus), Mars (MAVEN) and outer planets (Galileo and Cassini-Huygens). However, the in situ detection of organic compounds on Mars and Titan, coupled with ground-based measurements of amino acids in meteorites and a variety of organics in comets, has underlined the importance of molecular disambiguation in the characterization of high-priority planetary environments. The Mars Organic Molecule Analyzer (MOMA) flight instrument, centered on a linear ion trap, enables the in situ detection of volatile and non-volatile organics, but also the characterization of molecular structures through SWIFT ion isolation/excitation and tandem mass spectrometry (MSn). Like the SAM instrument on MSL, the MOMA investigation also includes a gas chromatograph (GC), thereby enabling the chemical separation of potential isobaric interferences based on retention times. The Linear Ion Trap Mass Spectrometer (LITMS; PI: William Brinckerhoff), developed to TRL 6 via the ROSES MatISSE Program, augments the core MOMA design and adds: expanded mass range (from 20 - 2000 Da); high-temperature evolved gas analysis (up to 1300°C); and, dual polarity detector assemblies (supporting the measurement of negative ions). The LITMS instrument will be tested in the field in 2017 through the Atacama Rover Astrobiology Drilling Studies (ARADS; PI: Brian Glass) ROSES PSTAR award. Following on these advancements, the Advanced Resolution Organic Molecule Analyzer (AROMA; PI: Ricardo Arevalo Jr.), supported through the ROSES PICASSO Program, combines a highly capable MOMA/LITMS-like linear ion trap and the ultrahigh resolution CosmOrbitrap mass analyzer developed by a consortium of five

  20. Analysis of glucosylceramides from various sources by liquid chromatography-ion trap mass spectrometry.

    PubMed

    Sugawara, Tatsuya; Aida, Kazuhiko; Duan, Jingjing; Hirata, Takashi

    2010-01-01

    Liquid chromatography-mass spectrometry is one of the most powerful methods for the identification and detection of chemical structures of lipids. In this study, we attempted to identify the chemical structures of glucosylceramides from maize, rice, mushroom (maitake) and sea cucumber by liquid chromatography-ion trap mass spectrometry. For structural analysis of glucosylceramides, [M+H]+, [M+H-18]+ or [M+H-162]+ in the positive scan mode was used for MS/MS analysis to obtain product ion spectra. The typical signals which are characteristic for the sphingoid base moieties were observed while the isomers could not be distinguished. This method should be useful for the structural determination of diverse glucosylceramide molecular species.

  1. The quantitation of procaine in equine plasma by liquid chromatography-linear ion trap mass spectrometry.

    PubMed

    Zientek, Keith D; Anderson, Danielle F; Wegner, Kirsten; Cole, Cynthia

    2007-03-01

    A method for the extraction and quantitation of procaine in equine plasma was developed for use with liquid chromatography-mass spectrometry (LC-MS). Procaine was isolated from equine plasma by liquid-liquid extraction at pH 11 with dichloromethane using procaine-d10 as an internal standard. Quantitation was achieved by LC-MS using a 3-microm C-18 column coupled to an electrospray ionization source on a linear ion-trap mass spectrometer. The limit of detection and limit of quantitation was determined to be 50 and 200 pg/mL, respectively. The lowest limit of detection determined by previous methods was 1 ng/mL. Administration samples were obtained as part of a larger study to determine a regulatory limit for procaine in racehorses and procaine concentrations were determined using this method.

  2. Rapid determination of drugs and semivolatile organics by direct thermal desorption ion trap mass spectrometry

    SciTech Connect

    Wise, M.B.; Ilgner, R.H.; Buchanan, M.V.; Guerin, M.R.

    1991-01-01

    Direct thermal desorption of analytes into an ion trap mass spectrometer (ITMS) is being investigated as a technique for the rapid screening of a wide variety of samples for target semivolatile organic compounds. This includes the direct detection of drugs in physiological fluids, semivolatile organic pollutants in water and waste samples, and air pollutants collected on sorbent cartridges. In order to minimize the analysis time, chromatographic separation is not performed on the sample prior to introduction into the ITMS. Instead, selective chemical ionization and tandem mass spectrometry (MS/MS) are used achieve the specificity required for the target analytes. Detection limits are typically 10--50 ppb using a 1 uL aliquot of a liquid sample without preconcentration. Sample turn-around time is 2 to 5 minutes and 3 to 5 target analytes can be quantitatively determined simultaneously. 6 figs.

  3. Automated Gain Control Ion Funnel Trap for Orthogonal Time-of-Flight Mass Spectrometry

    PubMed Central

    Ibrahim, Yehia M.; Belov, Mikhail E.; Liyu, Andrei V.; Smith, Richard D.

    2009-01-01

    Time-of-flight mass spectrometry (TOF MS) is increasingly used in proteomics research. Herein, we report on the development and characterization of a TOF MS instrument with improved sensitivity equipped with an electrodynamic ion funnel trap (IFT) that employs an automated gain control (AGC) capability. The IFT-TOF MS was coupled to a reversed-phase capillary liquid chromatography (RPLC) separation and evaluated in experiments with complex proteolytic digests. When applied to a global tryptic digest of Shewanella oneidensis proteins, an order-of-magnitude increase in sensitivity compared to that of the conventional continuous mode of operation was achieved due to efficient ion accumulation prior to TOF MS analysis. As a result of this sensitivity improvement and related improvement in mass measurement accuracy, the number of unique peptides identified in the AGC-IFT mode was 5-fold greater than that obtained in the continuous mode. PMID:18512944

  4. Detection of tyrosine phosphorylated peptides via skimmer collision-induced dissociation/ion trap mass spectrometry.

    PubMed

    Zolodz, Melissa D; Wood, Karl V

    2003-03-01

    Phosphorylation of proteins is an important post-translational protein modification in cellular response to environmental change and occurs in both prokaryotes and eukaryotes. Identification of the amino acid on individual proteins that become phosphorylated in response to extracellular stimulus is essential for understanding the mechanisms involved in the intracellular signals that these modifications facilitate. Most protein kinases catalyze the phosphorylation of proteins on serine, threonine or tyrosine. Although tyrosine phosphorylation is often the least abundant of the three major phosphorylation sites, it is important owing to its role in signal pathways. Currently available methods for the identification of phosphorylation sites can often miss low levels of tyrosine phosphorylations. This paper describes a method for the identification of phosphotyrosine-containing peptides using electrospray ionization on an ion trap mass spectrometer. Skimmer-activated collision-induced dissociation (CID) was used to generate the phosphotyrosine immonium ion at m/z 216. This method is gentle enough that the protonated molecule of the intact peptide is still observed. In-trap CID was employed for the verification of the phosphotyrosine immonium ion. Using this technique, low levels of phosphotyrosine-containing peptides can be identified from peptide mixtures separated by nanoflow micro liquid chromatography/mass spectrometry.

  5. Direct sampling ion trap mass spectrometry (DSITMS). Innovative technology summary report

    SciTech Connect

    1998-12-01

    This report describes the cost, performance, and other key characteristics of an innovative technology for determining the presence or absence, and measuring the concentration, of volatile organic compounds (VOCs) and semi-volatile organic compounds (SVOCs) in groundwater and soil, and in gaseous remediation process streams at hazardous waste sites. This new technology is Direct Sampling Ion Trap Mass Spectrometry (DSITMS). DSITMS introduces sample materials directly into an ion trap mass spectrometer by means of a very simple interface, such as a capillary restrictor or a polymer membrane. There is typically very little, if any, sample preparation and no chromatographic separation of the sample constituents. This means that the response of the instrument to the analytes or contaminants in a sample is nearly instantaneous, and that analytical methods based on DSITMS are fast. Analyses are typically completed in less than five minutes, and the analysis cost is generally 50% or less than the amount charged by commercial laboratories using Environmental Protection Agency (EPA) analysis methods.

  6. A Parallelization Scheme of the Periodic Signals Tracking Algorithm for Isochronous Mass Spectrometry on GPUs

    NASA Astrophysics Data System (ADS)

    Chen, Ruijiu; Wang, Meng; Yan, Xinliang; Yang, Qiong; Lam, Yihua; Yang, Lei; Zhang, Yuhu

    We developed a new program by using a parallelization scheme of the periodic signals tracking algorithm for isochronous mass spectrometry on GPUs. The computing time of data analysis can be reduced by a factor of ˜71 and ˜346 by using our new program on Tesla C1060 GPU and Tesla K20c GPU, compared to using old program on Xeon E5540 CPU. We succeed in performing real-time data analysis by using this new program.

  7. Developing a visual sensitive image features based CAD scheme to assist classification of mammographic masses

    NASA Astrophysics Data System (ADS)

    Wang, Yunzhi; Aghaei, Faranak; Tan, Maxine; Qiu, Yuchen; Liu, Hong; Zheng, Bin

    2017-03-01

    Computer-aided diagnosis (CAD) schemes of mammograms have been previously developed and tested. However, due to using "black-box" approaches with a large number of complicated features, radiologists have lower confidence to accept or consider CAD-cued results. In order to help solve this issue, this study aims to develop and evaluate a new CAD scheme that uses visual sensitive image features to classify between malignant and benign mammographic masses. A dataset of 301 masses detected on both craniocaudal (CC) and mediolateraloblique (MLO) view images was retrospectively assembled. Among them, 152 were malignant and 149 were benign. An iterative region-growing algorithm was applied to the special Gaussian-kernel filtered images to segment mass regions. Total 13 Image features were computed to mimic 5 categories of visually sensitive features that are commonly used by radiologists in classifying suspicious mammographic masses namely, mass size, shape factor, contrast, homogeneity and spiculation. We then selected one optimal feature in each of 5 feature categories by using a student t-test, and applied two logistic regression classifiers using either CC or MLO view images to distinguish between malignant and benign masses. Last, a fusion method of combining two classification scores was applied and tested. By applying a 10-fold cross-validation method, the area under receiver operating characteristic curves was 0.806+/-0.025. This study demonstrated a new approach to develop CAD scheme based on 5 visually sensitive image features. Combining with a "visual-aid" interface, CAD results are much more easily explainable to the observers and may increase their confidence to consider CAD-cued results.

  8. Hybrid quadrupole mass filter/quadrupole ion trap/time-of-flight-mass spectrometer for infrared multiple photon dissociation spectroscopy of mass-selected ions

    SciTech Connect

    Gulyuz, Kerim; Stedwell, Corey N.; Wang Da; Polfer, Nick C.

    2011-05-15

    We present a laboratory-constructed mass spectrometer optimized for recording infrared multiple photon dissociation (IRMPD) spectra of mass-selected ions using a benchtop tunable infrared optical parametric oscillator/amplifier (OPO/A). The instrument is equipped with two ionization sources, an electrospray ionization source, as well as an electron ionization source for troubleshooting. This hybrid mass spectrometer is composed of a quadrupole mass filter for mass selection, a reduced pressure ({approx}10{sup -5} Torr) quadrupole ion trap (QIT) for OPO irradiation, and a reflectron time-of-flight drift tube for detecting the remaining precursor and photofragment ions. A helium gas pulse is introduced into the QIT to temporarily increase the pressure and hence enhance the trapping efficiency of axially injected ions. After a brief pump-down delay, the compact ion cloud is subjected to the focused output from the continuous wave OPO. In a recent study, we implemented this setup in the study of protonated tryptophan, TrpH{sup +}, as well as collision-induced dissociation products of this protonated amino acid [W. K. Mino, Jr., K. Gulyuz, D. Wang, C. N. Stedwell, and N. C. Polfer, J. Phys. Chem. Lett. 2, 299 (2011)]. Here, we give a more detailed account on the figures of merit of such IRMPD experiments. The appreciable photodissociation yields in these measurements demonstrate that IRMPD spectroscopy of covalently bound ions can be routinely carried out using benchtop OPO setups.

  9. UV photodissociation of trapped ions following ion mobility separation in a Q-ToF mass spectrometer.

    PubMed

    Bellina, Bruno; Brown, Jeffery M; Ujma, Jakub; Murray, Paul; Giles, Kevin; Morris, Michael; Compagnon, Isabelle; Barran, Perdita E

    2014-12-21

    An ion mobility mass spectrometer has been modified to allow optical interrogation of ions with different mass-to-charge (m/z) ratios and/or mobilities (K). An ion gating and trapping procedure has been developed which allows us to store ions for several seconds enabling UV photodissociation (UVPD).

  10. Mass mosquito trapping for malaria control in western Kenya: study protocol for a stepped wedge cluster-randomised trial.

    PubMed

    Hiscox, Alexandra; Homan, Tobias; Mweresa, Collins K; Maire, Nicolas; Di Pasquale, Aurelio; Masiga, Daniel; Oria, Prisca A; Alaii, Jane; Leeuwis, Cees; Mukabana, Wolfgang R; Takken, Willem; Smith, Thomas A

    2016-07-26

    Increasing levels of insecticide resistance as well as outdoor, residual transmission of malaria threaten the efficacy of existing vector control tools used against malaria mosquitoes. The development of odour-baited mosquito traps has led to the possibility of controlling malaria through mass trapping of malaria vectors. Through daily removal trapping against a background of continued bed net use it is anticipated that vector populations could be suppressed to a level where continued transmission of malaria will no longer be possible. A stepped wedge cluster-randomised trial design was used for the implementation of mass mosquito trapping on Rusinga Island, western Kenya (the SolarMal project). Over the course of 2 years (2013-2015) all households on the island were provided with a solar-powered mosquito trapping system. A continuous health and demographic surveillance system combined with parasitological surveys three times a year, successive rounds of mosquito monitoring and regular sociological studies allowed measurement of intervention outcomes before, during and at completion of the rollout of traps. Data collection continued after achieving mass coverage with traps in order to estimate the longer term effectiveness of this novel intervention. Solar energy was exploited to provide electric light and mobile phone charging for each household, and the impacts of these immediate tangible benefits upon acceptability of and adherence to the use of the intervention are being measured. This study will be the first to evaluate whether the principle of solar-powered mass mosquito trapping could be an effective tool for elimination of malaria. If proven to be effective, this novel approach to malaria control would be a valuable addition to the existing strategies of long-lasting insecticide-treated nets and case management. Sociological studies provide a knowledge base for understanding the usage of this novel tool. Trialregister.nl: NTR3496 - SolarMal. Registered on

  11. Design and performance of an atmospheric pressure sampling interface for ion-trap/time-of-flight mass spectrometry

    SciTech Connect

    Setz, Patrick D.; Schmitz, Thomas A.; Zenobi, Renato

    2006-02-15

    An ion-trap/time-of-flight mass spectrometer in combination with an atmospheric pressure sampling interface was developed in order to simultaneously profit from the ease of sample handling at ambient pressure, from the storage and accumulation capabilities of an ion trap, and from the acquisition speed and sensitivity of a time-of-flight mass spectrometer. The sampling interface is an intermediate-pressure vacuum manifold that serves to enrich sampled analytes by jet separation with respect to the carrier gas (air) and simultaneously maintain vacuum conditions inside the ion-trap/time-of-flight instrument. Neutral analyte molecules are sampled and later ionized either by electron impact or chemical ionization. Ion accumulation is performed with a rf-only quadrupole ion trap with ground potential on the end caps during storage. For mass analysis, the trap's electrodes serve as a pulsed ion source for the attached linear time-of-flight mass spectrometer. In addition, laser desorbed molecules can also be sampled with this kind of instrument. Successful operation is shown by analyzing volatile substances (aniline, bromobenzene, styrene, and perfluorotributylamine), as well as laser-desorbed organic solids. Figures of merit include a sensitivity of 10 ppm, resolving power of 300 and demonstration of a mass spectrum of laser-desorbed anthracene with a signal-to-noise ratio of 270.

  12. A Consistent Treatment of TKE and Scalar Variance in an Eddy Diffusivity Mass Flux Scheme

    NASA Astrophysics Data System (ADS)

    Pressel, Kyle; Schneider, Tapio; Teixeira, Joao; Lam, Remi; Tan, Zhihong; Kaul, Colleen; Suselj, Kay; Witek, Marcin; Matheou, George

    2013-04-01

    Eddy Diffusivity Mass Flux (EDMF) schemes have shown significant utility in parameterizing boundary layer turbulent fluxes and as a basis for unifying the parameterization of boundary layer turbulence and clouds. EDMF schemes are based upon an updraft/environment decomposition of turbulent fluxes. A steady state bulk updraft model is used to represent the updraft, or mass flux, portion of the decomposed fluxes, while the environment component is represented with an eddy diffusivity closure. Typically, the eddy diffusivity closure is formulated as a 1.5 order closure requiring the solution of a prognostic equation for the turbulent kinetic energy (TKE). To date, however, EDMF schemes have not been formulated in a manner that formally separates the TKE in the environment from that in updraft. We present a new EDMF parameterization that respects the updraft/environment decomposition more formally. Orthogonally decomposing the TKE into updraft and environment components allows the eddy diffusivity closure for the environmental fluxes to be based on a prognostic equation for the environmental TKE. The updrafts interact with the environment by entraining environmental TKE and detraining mean updraft kinetic energy. The environmental TKE is then used to compute the environmental eddy diffusivity. We argue that an EDMF scheme formulated in this manner is more energetically and conceptually consistent. This formalism is then extended to provide a consistent parameterization of scalar variances. Applying this new formalism has several benefits. First, it removes the need to include the updraft buoyancy flux in the TKE equation, hence conceptually simplifying the EDMF scheme. Second, under relaxation of the requirement that updrafts occupy only a small area fraction, the environmental TKE obeys the limit that as updraft area fraction goes to unity the environmental TKE goes to zero. This second benefit has clear advantages for extension of the EDMF framework to scale

  13. Infrared ion spectroscopy in a modified quadrupole ion trap mass spectrometer at the FELIX free electron laser laboratory

    NASA Astrophysics Data System (ADS)

    Martens, Jonathan; Berden, Giel; Gebhardt, Christoph R.; Oomens, Jos

    2016-10-01

    We report on modifications made to a Paul-type quadrupole ion trap mass spectrometer and discuss its application in infrared ion spectroscopy experiments. Main modifications involve optical access to the trapped ions and hardware and software coupling to a variety of infrared laser sources at the FELIX infrared free electron laser laboratory. In comparison to previously described infrared ion spectroscopy experiments at the FELIX laboratory, we find significant improvements in efficiency and sensitivity. Effects of the trapping conditions of the ions on the IR multiple photon dissociation spectra are explored. Enhanced photo-dissociation is found at lower pressures in the ion trap. Spectra obtained under reduced pressure conditions are found to more closely mimic those obtained in the high-vacuum conditions of an Fourier transform ion cyclotron resonance mass spectrometer. A gas-mixing system is described enabling the controlled addition of a secondary gas into helium buffer gas flowing into the trap and allows for ion/molecule reactions in the trap. The electron transfer dissociation (ETD) option of the mass spectrometer allows for IR structure characterization of ETD-generated peptide dissociation products.

  14. Infrared ion spectroscopy in a modified quadrupole ion trap mass spectrometer at the FELIX free electron laser laboratory.

    PubMed

    Martens, Jonathan; Berden, Giel; Gebhardt, Christoph R; Oomens, Jos

    2016-10-01

    We report on modifications made to a Paul-type quadrupole ion trap mass spectrometer and discuss its application in infrared ion spectroscopy experiments. Main modifications involve optical access to the trapped ions and hardware and software coupling to a variety of infrared laser sources at the FELIX infrared free electron laser laboratory. In comparison to previously described infrared ion spectroscopy experiments at the FELIX laboratory, we find significant improvements in efficiency and sensitivity. Effects of the trapping conditions of the ions on the IR multiple photon dissociation spectra are explored. Enhanced photo-dissociation is found at lower pressures in the ion trap. Spectra obtained under reduced pressure conditions are found to more closely mimic those obtained in the high-vacuum conditions of an Fourier transform ion cyclotron resonance mass spectrometer. A gas-mixing system is described enabling the controlled addition of a secondary gas into helium buffer gas flowing into the trap and allows for ion/molecule reactions in the trap. The electron transfer dissociation (ETD) option of the mass spectrometer allows for IR structure characterization of ETD-generated peptide dissociation products.

  15. Shedding light on the mercury mass discrepancy by weighing Hg 52+ ions in a Penning trap

    NASA Astrophysics Data System (ADS)

    Fritioff, T.; Bluhme, H.; Schuch, R.; Bergström, I.; Björkhage, M.

    2003-07-01

    In their nuclear tables Audi and Wapstra have pointed out a serious mass discrepancy between their extrapolated values for the mercury isotopes and those from a direct measurement by the Manitoba group. The values deviate by as much as 85 ppb from each other with claimed uncertainties of about 16 and 7 ppb, respectively. In order to decide which values are correct the masses of the 198Hg and 204Hg isotopes have been measured in the Stockholm Penning trap mass spectrometer SMILETRAP using 52+ ions. This charge state corresponds to a filled Ni electron configuration for which the electron binding energy can be accurately calculated. The mass values obtained are 197.966 768 44(43) u for 198Hg and 203.973 494 10(39) u for 204Hg. These values agree with those measured by the Manitoba group, with a 3 times lower uncertainty. This measurement was made possible through the implementation of a cooling technique of the highly charged mercury ions during charge breeding in the electron beam ion source used for producing the Hg 52+ ions.

  16. Optical trapping

    PubMed Central

    Neuman, Keir C.; Block, Steven M.

    2006-01-01

    Since their invention just over 20 years ago, optical traps have emerged as a powerful tool with broad-reaching applications in biology and physics. Capabilities have evolved from simple manipulation to the application of calibrated forces on—and the measurement of nanometer-level displacements of—optically trapped objects. We review progress in the development of optical trapping apparatus, including instrument design considerations, position detection schemes and calibration techniques, with an emphasis on recent advances. We conclude with a brief summary of innovative optical trapping configurations and applications. PMID:16878180

  17. Caution on the use of liquid nitrogen traps in stable hydrogen isotope-ratio mass spectrometry

    USGS Publications Warehouse

    Coplen, T.B.; Qi, H.

    2010-01-01

    An anomalous stable hydrogen isotopic fractionation of 4 ??? in gaseous hydrogen has been correlated with the process of adding liquid nitrogen (LN2) to top off the dewar of a stainless-steel water trap on a gaseous hydrogen-water platinum equilibration system. Although the cause of this isotopic fractionation is unknown, its effect can be mitigated by (1) increasing the capacity of any dewars so that they do not need to be filled during a daily analytic run, (2) interspersing isotopic reference waters among unknowns, and (3) applying a linear drift correction and linear normalization to isotopic results with a program such as Laboratory Information Management System (LIMS) for Light Stable Isotopes. With adoption of the above guidelines, measurement uncertainty can be substantially improved. For example, the long-term (months to years) ??2H reproducibility (1?? standard deviation) of nine local isotopic reference waters analyzed daily improved substantially from about 1 ??? to 0.58 ???. This isotopically fractionating mechanism might affect other isotope-ratio mass spectrometers in which LN2 is used as a moisture trap for gaseous hydrogen. ?? This article not subject to U.S. Copyright. Published 2010 by the American Chemical Society.

  18. Caution on the use of liquid nitrogen traps in stable hydrogen isotope-ratio mass spectrometry

    USGS Publications Warehouse

    Coplen, Tyler B.; Qi, Haiping

    2010-01-01

    An anomalous stable hydrogen isotopic fractionation of 4 ‰ in gaseous hydrogen has been correlated with the process of adding liquid nitrogen (LN2) to top off the dewar of a stainless-steel water trap on a gaseous hydrogen-water platinum equilibration system. Although the cause of this isotopic fractionation is unknown, its effect can be mitigated by (1) increasing the capacity of any dewars so that they do not need to be filled during a daily analytic run, (2) interspersing isotopic reference waters among unknowns, and (3) applying a linear drift correction and linear normalization to isotopic results with a program such as Laboratory Information Management System (LIMS) for Light Stable Isotopes. With adoption of the above guidelines, measurement uncertainty can be substantially improved. For example, the long-term (months to years) δ2H reproducibility (1& sigma; standard deviation) of nine local isotopic reference waters analyzed daily improved substantially from about 1‰ to 0.58 ‰. This isotopically fractionating mechanism might affect other isotope-ratio mass spectrometers in which LN2 is used as a moisture trap for gaseous hydrogen

  19. Direct Monitoring of Trace Atmospheric Species via Ion Trap Mass Spectrometry

    NASA Technical Reports Server (NTRS)

    Palmer, P. T.; Pearson, Richard; Saimonson, Jay D.; Wong, Carla M.; Lawless, James G. (Technical Monitor)

    1994-01-01

    There is an ever-increasing emphasis on the part of government agencies, academia, and industry on enhancing our understanding of atmospheric processes and assessing the impact of human activities on these processes. While issues such as the ozone hole and rising levels of greenhouse gases have received major attention. relatively little is known about the types, concentrations, sources, and sinks of hydrocarbons in the troposphere and stratosphere. Such information would be of tremendous utility in assessing the roles of various anthropogenic and biogenic processes on global carbon cycles. An ion trap mass spectrometer has been developed for monitoring trace levels of hydrocarbons in the atmosphere on NASA's DC-8 "flying laboratory". This aircraft is used to provide measurements in support of a number of "Mission to Planet Earth" activities and tropospheric chemistry experiments. In past missions, specific compounds have been monitored via highly specialized instrumentation, fast GO, or collection of whole air samples for subsequent ground-based analysis. The ion trap has several features. including small size. excellent sensitivity, and broad applicability, which make it highly atttrat:ive for atmospheric monitoring. The design of this instrument, its air sampling interface. and the various complications associated with aircraft-deployment will be described. Data showing the sensitivity of the instrument for detecting hydrocarbons at mixing ratios below one part-per-billion, and the use of MS/MS for direct, on-line, real-time monitoring will be presented.

  20. Multi-residue determination of pesticides in vegetables by gas chromatography/ion trap mass spectrometry.

    PubMed

    Tao, C-J; Hu, J-Y; Li, J-Z; Zheng, S-S; Liu, W; Li, C-J

    2009-01-01

    To monitor possible contamination of edible vegetables by common pesticides, an analytical method using gas chromatography combined with ion trap spectrometry (GC-IT/MS) was developed to measure simultaneously up to 39 pesticide residues, belonging to organophosphors, organochlorines, pyrethroids or carbamates classes, left on four kinds of popular vegetables. The procedure entails addition of acetone, dichloromethane, and sodium chloride to a small amount of vegetable, then the mixture was shaken intensively and centrifuged for phase separation. An aliquot of the organic layer was cleanup using solid-phase extraction (SPE) cartridges filled with graphitized carbon black (GCB) in combination with acidic aluminum oxide. Gas chromatography with ion trap mass spectrometer was then used for qualitative and quantitative determination of the pesticides. The GCB combination with acidic aluminum oxide was found more suitable than florisil, aluminum oxide and silicon dioxide for sample cleanup with recoveries above 70% for most pesticides in removing the majority of co-extracted matrices. Variation coefficients of the repeatability typically smaller than 20% have been achieved for a wide range of the investigated pesticides. A set of critical instrument parameters for the GC-IT/MS Varian system in the MS mode was established. Based on optimization work conducted in this study, the 39 pesticides were separated successively with the limits of detection between 0.02 and 0.1 mg/kg.

  1. Development of a Linear Ion Trap Mass Spectrometer (LITMS) Investigation for Future Planetary Surface Missions

    NASA Technical Reports Server (NTRS)

    Brinckerhoff, W.; Danell, R.; Van Ameron, F.; Pinnick, V.; Li, X.; Arevalo, R.; Glavin, D.; Getty, S.; Mahaffy, P.; Chu, P.; hide

    2014-01-01

    Future surface missions to Mars and other planetary bodies will benefit from continued advances in miniature sensor and sample handling technologies that enable high-performance chemical analyses of natural samples. Fine-scale (approx.1 mm and below) analyses of rock surfaces and interiors, such as exposed on a drill core, will permit (1) the detection of habitability markers including complex organics in association with their original depositional environment, and (2) the characterization of successive layers and gradients that can reveal the time-evolution of those environments. In particular, if broad-based and highly-sensitive mass spectrometry techniques could be brought to such scales, the resulting planetary science capability would be truly powerful. The Linear Ion Trap Mass Spectrometer (LITMS) investigation is designed to conduct fine-scale organic and inorganic analyses of short (approx.5-10 cm) rock cores such as could be acquired by a planetary lander or rover arm-based drill. LITMS combines both pyrolysis/gas chromatograph mass spectrometry (GCMS) of sub-sampled core fines, and laser desorption mass spectrometry (LDMS) of the intact core surface, using a common mass analyzer, enhanced from the design used in the Mars Organic Molecule Analyzer (MOMA) instrument on the 2018 ExoMars rover. LITMS additionally features developments based on the Sample Analysis at Mars (SAM) investigation on MSL and recent NASA-funded prototype efforts in laser mass spectrometry, pyrolysis, and precision subsampling. LITMS brings these combined capabilities to achieve its four measurement objectives: (1) Organics: Broad Survey Detect organic molecules over a wide range of molecular weight, volatility, electronegativity, concentration, and host mineralogy. (2) Organic: Molecular Structure Characterize internal molecular structure to identify individual compounds, and reveal functionalization and processing. (3) Inorganic Host Environment Assess the local chemical

  2. Exploring a Plume-Based Mass-Flux Scheme in the Boundary-Layer Gray Zone

    NASA Astrophysics Data System (ADS)

    Weismüller, M.; Heus, T.; Neggers, R.

    2015-12-01

    We investigate the behavior of plume-based mass flux parameterizations in the gray zone of boundary layer convection, to inform the development of scale-aware and scale-adaptive parameterizations. To this end, the Eddy Diffusivity Mass Flux scheme with multiple plumes, named ED(MF)n, is implemented in a Large-Eddy Simulation (LES) model. This way, the LES is used as a non-hydrostatic larger-scale model, providing a convenient platform for investigating the behavior of parameterizations across the boundary-layer gray zone. First, as a feasibility study, a single plume is launched in every column of the LES in an offline, diagnostic way, without affecting the simulation. We find that the plumes are sensitive to the LES columns in which they rise, feeling the presence of LES clouds. A plume budget analysis shows that the plume termination height is mostly determined by the mixing term, and not so much by the buoyancy term. Then, the ED(MF)n is made interactive with the resolved flow, replacing the LES-subgrid scheme. The work performed by the scheme reduces with increasing LES resolution, due to the size-filtering applied in the ED(MF)n framework. An encouraging result is that the total specific humidity flux is conserved across the investigated range of LES resolutions, covering the gray zone between 10m (large-eddy resolving) and 10km (regional-scale). The sensitivity of the results to various model parameters is assessed.

  3. Fast Screening of Polycyclic Aromatic Hydrocarbons using Trapped Ion Mobility Spectrometry - Mass Spectrometry

    PubMed Central

    Castellanos, A.; Benigni, P.; Hernandez, D. R.; DeBord, J. D.; Ridgeway, M. E.; Park, M. A.

    2014-01-01

    In the present paper, we showed the advantages of trapped ion mobility spectrometry coupled too mass spectrometry (TIMS-MS) combined with theoretical calculations for fast identification (millisecond timescale) of polycyclic aromatic hydrocarbons (PAH) compounds from complex mixtures. Accurate PAH collision cross sections (CCS, in nitrogen as a bath gas) are reported for the most commonly encountered PAH compounds and the ability to separate PAH geometric isomers is shown for three isobaric pairs with mobility resolution exceeding 150 (3–5 times higher than conventional IMS devices). Theoretical candidate structures (optimized at the DFT/B3LYP level) are proposed for the most commonly encountered PAH compounds showing good agreement with the experimental CCS values (<5%). The potential of TIMS-MS for the separation and identification of PAH compounds from complex mixtures without the need of lengthy pre-separation steps is illustrated for the case of a complex soil mixture. PMID:25558291

  4. An expert system/ion trap mass spectrometry approach for life support systems monitoring

    NASA Technical Reports Server (NTRS)

    Palmer, Peter T.; Wong, Carla M.; Yost, Richard A.; Johnson, Jodie V.; Yates, Nathan A.; Story, Michael

    1992-01-01

    Efforts to develop sensor and control system technology to monitor air quality for life support have resulted in the development and preliminary testing of a concept based on expert systems and ion trap mass spectrometry (ITMS). An ITMS instrument provides the capability to identify and quantitate a large number of suspected contaminants at trace levels through the use of a variety of multidimensional experiments. An expert system provides specialized knowledge for control, analysis, and decision making. The system is intended for real-time, on-line, autonomous monitoring of air quality. The key characteristics of the system, performance data and analytical capabilities of the ITMS instrument, the design and operation of the expert system, and results from preliminary testing of the system for trace contaminant monitoring are described.

  5. An expert system/ion trap mass spectrometry approach for life support systems monitoring

    NASA Technical Reports Server (NTRS)

    Palmer, Peter T.; Wong, Carla M.; Yost, Richard A.; Johnson, Jodie V.; Yates, Nathan A.; Story, Michael

    1992-01-01

    Efforts to develop sensor and control system technology to monitor air quality for life support have resulted in the development and preliminary testing of a concept based on expert systems and ion trap mass spectrometry (ITMS). An ITMS instrument provides the capability to identify and quantitate a large number of suspected contaminants at trace levels through the use of a variety of multidimensional experiments. An expert system provides specialized knowledge for control, analysis, and decision making. The system is intended for real-time, on-line, autonomous monitoring of air quality. The key characteristics of the system, performance data and analytical capabilities of the ITMS instrument, the design and operation of the expert system, and results from preliminary testing of the system for trace contaminant monitoring are described.

  6. Quantification of Fumaria officinalis isoquinoline alkaloids by nonaqueous capillary electrophoresis-electrospray ion trap mass spectrometry.

    PubMed

    Sturm, Sonja; Strasser, Eva-Maria; Stuppner, Hermann

    2006-04-21

    A capillary electrophoresis (CE) method using non-aqueous (NA) separation solutions combined with an ion trap mass spectrometer (MS and MS/MS) as detection device is presented for the separation, identification and quantification of isoquinoline alkaloids from Fumaria officinalis. The best results were obtained with a mixture of acetonitrile-methanol (9:1, v/v) containing 60mM ammonium acetate and 2.2M acetic acid as running electrolyte and an applied voltage of 30 kV. Electrospray MS measurements were performed in the positive ionization mode with isopropanol-water (1:1, v/v) as sheath liquid at a flow rate of 3 microl/min. Alkaloids were detected as [M+H](+)-ions and showed typical fragmentation patterns in MS/MS experiments. The developed assay was used for the quantification of seven isoquinoline alkaloids representing different structural subtypes in Fumariae herba extracts and F. herba containing phytopharmaceuticals.

  7. Plasticizer contamination from vacuum system O-rings in a quadrupole ion trap mass spectrometer.

    PubMed

    Verge, Kent M; Agnes, George R

    2002-08-01

    The outgassing of plasticizers from Buna-N and Viton o-rings under vacuum lead to undesired ion-molecule chemistry in an Electrospray Quadrupole Ion Trap Mass Spectrometer. In experiments with the helium bath gas pressure >1.2 mTorr, or whenever analyte ions were stored for >100 ms, extensive loss of analyte ions by proton transfer or adduction with o-ring plasticizers bis(2-ethylhexyl) phthalate and bis(2-ethylhexyl) adipate occurred. A temporary solution to this contamination problem was found to be overnight refluxing in hexane of all the o-rings in the vacuum system. This procedure alleviated this plasticizer contamination for approximately 100 hours of operation. These results, and those that lead to identification of the contamination as plasticizers outgassing from o-rings are described.

  8. Effects of Various Interventions, Including Mass Trapping with Passive Pitfall Traps, on Low-Level Bed Bug Populations in Apartments.

    PubMed

    Cooper, Richard; Wang, Changlu; Singh, Narinderpal

    2016-04-01

    Two experiments were conducted to evaluate the effects of various interventions on low-level bed bug, Cimex lectularius L., populations in occupied apartments. The first experiment was conducted in occupied apartments under three intervention conditions: never treated (Group I), recently treated with no further treatment (Group II), and recently treated with continued treatment (Group III). Each apartment was monitored with pitfall-style traps (interceptors) installed at beds and upholstered furniture (sleeping and resting areas) along with ∼18 additional interceptors throughout the apartment. The traps were inspected every 2 wk. After 22 wk, bed bugs had been eliminated (zero trap catch for eight consecutive weeks and none detected in visual inspections) in 96, 87, and 100% of the apartments in Groups I, II, and III, respectively. The second experiment investigated the impact of interceptors as a control measure in apartments with low-level infestations. In the treatment group, interceptors were continuously installed at and away from sleeping and resting areas and were inspected every 2 wk for 16 wk. In the control group, interceptors were placed in a similar fashion as the treatment group but were only placed during 6–8 and 14–16 wk to obtain bed bug counts. Bed bug counts were significantly lower at 8 wk in the treatment group than in the control group. At 16 wk, bed bugs were eliminated in 50% of the apartments in the treatment group. The implications of our results in the development of bed bug management strategies and monitoring protocols are discussed.

  9. Determination of Collision Cross Sections Using a Fourier Transform Electrostatic Linear Ion Trap Mass Spectrometer.

    PubMed

    Dziekonski, Eric T; Johnson, Joshua T; Lee, Kenneth W; McLuckey, Scott A

    2017-07-11

    Collision cross sections (CCSs) were determined from the frequency-domain linewidths in a Fourier transform electrostatic linear ion trap. With use of an ultrahigh-vacuum precision leak valve and nitrogen gas, transients were recorded as the background pressure in the mass analyzer chamber was varied between 4× 10(-8) and 7 × 10(-7) Torr. The energetic hard-sphere ion-neutral collision model, described by Xu and coworkers, was used to relate the recorded image charge to the CCS of the molecule. In lieu of our monoisotopically isolating the mass of interest, the known relative isotopic abundances were programmed into the Lorentzian fitting algorithm such that the linewidth was extracted from a sum of Lorentzians. Although this works only if the isotopic distribution is known a priori, it prevents ion loss, preserves the high signal-to-noise ratio, and minimizes the experimental error on our homebuilt instrument. Six tetraalkylammonium cations were used to correlate the CCS measured in the electrostatic linear ion trap with that measured by drift-tube ion mobility spectrometry, for which there was an excellent correlation (R (2) ≈ 0.9999). Although the absolute CCSs derived with our method differ from those reported, the extracted linear correlation can be used to correct the raw CCS. With use of [angiotensin II](2+) and reserpine, the corrected CCSs (334.9 ± 2.1 and 250.1 ± 0.5, respectively) were in good agreement with the reported ion mobility spectrometry CCSs (335 and 254.3, respectively). With sufficient signal-to-noise ratio, the CCSs determined are reproducible to within a fraction of a percent, comparable to the uncertainties reported on dedicated ion mobility instruments. Graphical Abstract ᅟ.

  10. Determination of Collision Cross Sections Using a Fourier Transform Electrostatic Linear Ion Trap Mass Spectrometer

    NASA Astrophysics Data System (ADS)

    Dziekonski, Eric T.; Johnson, Joshua T.; Lee, Kenneth W.; McLuckey, Scott A.

    2017-07-01

    Collision cross sections (CCSs) were determined from the frequency-domain linewidths in a Fourier transform electrostatic linear ion trap. With use of an ultrahigh-vacuum precision leak valve and nitrogen gas, transients were recorded as the background pressure in the mass analyzer chamber was varied between 4× 10-8 and 7 × 10-7 Torr. The energetic hard-sphere ion-neutral collision model, described by Xu and coworkers, was used to relate the recorded image charge to the CCS of the molecule. In lieu of our monoisotopically isolating the mass of interest, the known relative isotopic abundances were programmed into the Lorentzian fitting algorithm such that the linewidth was extracted from a sum of Lorentzians. Although this works only if the isotopic distribution is known a priori, it prevents ion loss, preserves the high signal-to-noise ratio, and minimizes the experimental error on our homebuilt instrument. Six tetraalkylammonium cations were used to correlate the CCS measured in the electrostatic linear ion trap with that measured by drift-tube ion mobility spectrometry, for which there was an excellent correlation (R 2 ≈ 0.9999). Although the absolute CCSs derived with our method differ from those reported, the extracted linear correlation can be used to correct the raw CCS. With use of [angiotensin II]2+ and reserpine, the corrected CCSs (334.9 ± 2.1 and 250.1 ± 0.5, respectively) were in good agreement with the reported ion mobility spectrometry CCSs (335 and 254.3, respectively). With sufficient signal-to-noise ratio, the CCSs determined are reproducible to within a fraction of a percent, comparable to the uncertainties reported on dedicated ion mobility instruments.

  11. Deconvolution of Mixture Spectra from Ion-Trap Data-Independent-Acquisition Tandem Mass Spectrometry

    PubMed Central

    Bern, Marshall; Finney, Gregory; Hoopmann, Michael R.; Merrihew, Gennifer; Toth, Michael J.; MacCoss, Michael J.

    2010-01-01

    Data-independent tandem mass spectrometry isolates and fragments all of the molecular species within a given mass-to-charge window, regardless of whether a precursor ion was detected within the window. For shotgun proteomics on complex protein mixtures, data-independent MS/MS offers certain advantages over the traditional data-dependent MS/MS: identification of low-abundance peptides with insignificant precursor peaks; more direct relative quantification, free of biases caused by competing precursors and dynamic exclusion; and faster throughput due to simultaneous fragmentation of multiple peptides. However, data-independent MS/MS, especially on low-resolution ion-trap instruments, strains standard peptide identification programs, because of less precise knowledge of the peptide precursor mass and large numbers of spectra composed of two or more peptides. Here we describe a computer program called DeMux that deconvolves mixture spectra and improves the peptide identification rate by ~25%. We compare the number of identifications made by data-independent and data-dependent MS/MS at the peptide and protein levels: conventional data-dependent MS/MS makes a greater number of identifications but is less reproducible from run to run. PMID:20039681

  12. Miniaturized system of a gas chromatograph coupled with a Paul ion trap mass spectrometer

    NASA Technical Reports Server (NTRS)

    Shortt, B. J.; Darrach, M. R.; Holland, Paul M.; Chutjian, A.

    2005-01-01

    Miniature gas chromatography (GC) and miniature mass spectrometry (MS) instrumentation has been developed to identify and quantify the chemical compounds present in complex mixtures of gases. The design approach utilizes micro-GC components coupled with a Paul quadrupole ion trap (QIT) mass spectrometer. Inherent to the system are high sensitivity, good dynamic range, good QIT resolution, low GC flow-rates to minimize vacuum requirements and the need for consumables; and the use of a modular approach to adapt to volatile organic compounds dissolved in water or present in sediment. Measurements are reported on system response to gaseous species at concentrations varying over four orders of magnitude. The ability of the system to deal with complicated mixtures is demonstrated, and future improvements are discussed. The GC/QIT system described herein has a mass, volume and power that are, conservatively, one-twentieth of those of commercial off-the-shelf systems. Potential applications are to spacecraft cabin-air monitoring, robotic planetary exploration and trace-species detection for residual gas analysis and environmental monitoring.

  13. Characterization of environmental samples using ion trap-secondary ion mass spectrometry

    SciTech Connect

    Groenewold, G.S.; Appelhans, A.D.; Ingram, J.C.

    1998-02-01

    The detection of chemical warfare agent residues on environmental surfaces is an important analytical activity because of the potential for proliferation of these weapons, and for environmental monitoring in areas where they are stored. Historically, one of the most widely used agents has been bis(2-chloroethyl) sulfide, also known as mustard gas and HD. It was initially used in combat in 1917; by the end of the First World War, more than 16% of all casualties were due to chemicals, in most cases mustard. Manufacture of mustard is continuing to this day; consequently, there are ongoing opportunities for exposure. 2-Chloroethyl ethyl sulfide (CEES) is used as a simulant for mustard (HD) in a study to develop secondary ion mass spectrometry (SIMS) for rapid, semi-quantitative detection of mustard on soil. Using SIMS with single stage mass spectrometry, a signature for CEES can be unequivocally observed only at the highest concentrations (0.1 monolayer and above). Selectivity and sensitivity are markedly improved employing multiple-stage mass spectrometry using an ion trap. C{sub 2}H{sub 5}SC{sub 2}H{sub 4}{sup +} from CEES eliminates C{sub 2}H{sub 4} and H{sub 2}S, which are highly diagnostic. CEES was detected at 0.0012 monolayer on soil. A single analysis could be conducted in under 5 minutes.

  14. Initial pulse of Siberian Traps sills as the trigger of the end-Permian mass extinction.

    PubMed

    Burgess, S D; Muirhead, J D; Bowring, S A

    2017-07-31

    Mass extinction events are short-lived and characterized by catastrophic biosphere collapse and subsequent reorganization. Their abrupt nature necessitates a similarly short-lived trigger, and large igneous province magmatism is often implicated. However, large igneous provinces are long-lived compared to mass extinctions. Therefore, if large igneous provinces are an effective trigger, a subinterval of magmatism must be responsible for driving deleterious environmental effects. The onset of Earth's most severe extinction, the end-Permian, coincided with an abrupt change in the emplacement style of the contemporaneous Siberian Traps large igneous province, from dominantly flood lavas to sill intrusions. Here we identify the initial emplacement pulse of laterally extensive sills as the critical deadly interval. Heat from these sills exposed untapped volatile-fertile sediments to contact metamorphism, likely liberating the massive greenhouse gas volumes needed to drive extinction. These observations suggest that large igneous provinces characterized by sill complexes are more likely to trigger catastrophic global environmental change than their flood basalt- and/or dike-dominated counterparts.Although the mass end-Permian extinction is linked to large igneous provinces, its trigger remains unclear. Here, the authors propose that the abrupt change from flood lavas to sills resulted in the heating of sediments and led to the release of large-scale greenhouse gases to drive the end-Permian extinction.

  15. Secondary Ion Mass Spectrometry of Zeolite Materials: Observation of Abundant Aluminosilicate Oligomers Using an Ion Trap

    SciTech Connect

    Groenewold, Gary Steven; Kessinger, Glen Frank; Scott, Jill Rennee; Gianotto, Anita Kay; Appelhans, Anthony David; Delmore, James Edward

    2000-12-01

    Oligomeric oxyanions were observed in the secondary ion mass spectra (SIMS) of zeolite materials. The oxyanions have the general composition AlmSinO2(m+n)H(m-1)- (m + n = 2 to 8) and are termed dehydrates. For a given mass, multiple elemental compositions are possible because (Al + H) is an isovalent and isobaric substitute for Si. Using 18 keV Ga+ as a projectile, oligomer abundances are low relative to the monomers. Oligomer abundance can be increased by using the polyatomic projectile ReO4- (~5 keV). Oligomer abundance can be further increased using an ion trap (IT-) SIMS; in this instrument, long ion lifetimes (tens of ms) and relatively high He pressure result in significant collisional stabilization and increased high-mass abundance. The dehydrates rapidly react with adventitious H2O present in the IT-SIMS to form mono-, di-, and trihydrates. The rapidity of the reaction and comparison to aluminum oxyanion hydration suggest that H2O adds to the aluminosilicate oxyanions in a dissociative fashion, forming covalently bound product ions. In addition to these findings, it was noted that production of abundant oligomeric aluminosilicates could be significantly increased by substituting the countercation (NH4+) with the larger alkali ions Rb+ and Cs+. This constitutes a useful tactic for generating large aluminosilicate oligomers for surface characterization and ion-molecule reactivity studies.

  16. Miniaturized system of a gas chromatograph coupled with a Paul ion trap mass spectrometer

    NASA Technical Reports Server (NTRS)

    Shortt, B. J.; Darrach, M. R.; Holland, Paul M.; Chutjian, A.

    2005-01-01

    Miniature gas chromatography (GC) and miniature mass spectrometry (MS) instrumentation has been developed to identify and quantify the chemical compounds present in complex mixtures of gases. The design approach utilizes micro-GC components coupled with a Paul quadrupole ion trap (QIT) mass spectrometer. Inherent to the system are high sensitivity, good dynamic range, good QIT resolution, low GC flow-rates to minimize vacuum requirements and the need for consumables; and the use of a modular approach to adapt to volatile organic compounds dissolved in water or present in sediment. Measurements are reported on system response to gaseous species at concentrations varying over four orders of magnitude. The ability of the system to deal with complicated mixtures is demonstrated, and future improvements are discussed. The GC/QIT system described herein has a mass, volume and power that are, conservatively, one-twentieth of those of commercial off-the-shelf systems. Potential applications are to spacecraft cabin-air monitoring, robotic planetary exploration and trace-species detection for residual gas analysis and environmental monitoring.

  17. 4-Neutrino mass schemes and the likelihood of (3+1)-mass spectra

    NASA Astrophysics Data System (ADS)

    Grimus, W.; Schwetz, T.

    2001-04-01

    We examine the (3+1)-class of 4-neutrino mass spectra within a rigorous statistical analysis based on the Bayesian approach to probability. The data of the Bugey, CDHS and KARMEN experiments are combined by using a likelihood function. Our statistical approach allows us to incorporate solar and atmospheric neutrino data and also the result of the CHOOZ experiment via inequalities which involve elements of the neutrino mixing matrix and are derived from these data. For any short-baseline Δ m^2 we calculate a bound on the LSND transition amplitude A_{μ;e} and find that, in the Δ m^2 A_{μ;e} plane, there is no overlap between the 99% CL region allowed by the latest LSND analysis and the region allowed by our bound on A_{μ;e} at 95% CL; there are some small overlap regions if we take the bound at 99% CL. Therefore, we conclude that, with the existing data, the (3+1)-neutrino mass spectra are not very likely. However, treating the (2+2)-spectra with our method, we find that they are well compatible with all data.

  18. The effectiveness of habitat modification schemes for enhancing beneficial insects: Assessing the importance of trap cropping management approach

    NASA Astrophysics Data System (ADS)

    Trisnawati, Indah; Azis, Abdul

    2017-06-01

    Many farms in regions of intensive crop production lack the habitats that historically provided resources to beneficial insects, and this lack has compromised the ability of farmers to rely on natural enemies for pest control. One of the strategies to boost populations of existing or naturally occurring beneficial insects is to supply them with appropriate habitat and alternative food sources, such as diversifying trap crop systems and plant populations in or around fields include perennials and flowering plants. Trap cropping using insectary plant that attracts beneficial insects as natural enemies, especially flowering plants, made for provision of habitat for predators or parasitoids that are useful for biological control. Perimeter trap cropping (PTC) is a method of integrated pest management in which the main crop is surrounded with a perimeter trap crop that is more attractive to pests. We observed PTC habitat modification and conventionaly-managed tobacco farms in Purwosari Village, Pasuruan (East Java) to evaluate the effectiveness of habitat modification management prescription (perimeter trap crop using flowering plant Crotalaria juncea) on agroecosystem natural enemies. Field tests were conducted in natural enemies (predator and parasitoid) abundance dynamic and diversity on tobacco field in Purwoasri, Pasuruan. Yellow pan trap, sweep net and hand collecting methods were applied in each 10 days during tobacco growth stage (vegetative, generative until reproductive/harvesting. The results showed that application perimeter trap crop with C. juncea in tobacco fields able to help arthropod conservation of natural enemies on all tobacco growth stages. These results were evidenced the increase in abundance of predators and parasitoids and the increased value of the Diversity Index (H') and Evenness Index (EH) in all tobacco growth phases. Composition of predator and parasitoid in the habitat modification field were more diverse than in the conventional field

  19. Real-Time Quantitative Analysis of H2, He, O2, and Ar by Quadrupole Ion Trap Mass Spectrometry

    NASA Technical Reports Server (NTRS)

    Ottens, Andrew K.; Harrison, W. W.; Griffin, Timothy P.; Helms, William R.; Voska, N. (Technical Monitor)

    2002-01-01

    The use of a quadrupole ion trap mass spectrometer for quantitative analysis of hydrogen and helium as well as other permanent gases is demonstrated. The customized instrument utilizes the mass selective instability mode of mass analysis as with commercial instruments; however, this instrument operates at a greater RF trapping frequency and without a buffer gas. With these differences, a useable mass range from 2 to over 50 Da is achieved, as required by NASA for monitoring the Space Shuttle during a launch countdown. The performance of the ion trap is evaluated using part-per-million concentrations of hydrogen, helium, oxygen and argon mixed into a nitrogen gas stream. Relative accuracy and precision when quantitating the four analytes were better than the NASA-required minimum of 10% error and 5% deviation, respectively. Limits of detection were below the NASA requirement of 25-ppm hydrogen and 100-ppm helium; those for oxygen and argon were slightly higher than the requirement. The instrument provided adequate performance at fast data recording rates, demonstrating the utility of an ion trap mass spectrometer as a real-time quantitative monitoring device for permanent gas analysis.

  20. Real-Time Quantitative Analysis of H2, He, O2, and Ar by Quadrupole Ion Trap Mass Spectrometry

    NASA Technical Reports Server (NTRS)

    Ottens, Andrew K.; Harrison, W. W.; Griffin, Timothy P.; Helms, William R.; Voska, N. (Technical Monitor)

    2002-01-01

    The use of a quadrupole ion trap mass spectrometer for quantitative analysis of hydrogen and helium as well as other permanent gases is demonstrated. The customized instrument utilizes the mass selective instability mode of mass analysis as with commercial instruments; however, this instrument operates at a greater RF trapping frequency and without a buffer gas. With these differences, a useable mass range from 2 to over 50 Da is achieved, as required by NASA for monitoring the Space Shuttle during a launch countdown. The performance of the ion trap is evaluated using part-per-million concentrations of hydrogen, helium, oxygen and argon mixed into a nitrogen gas stream. Relative accuracy and precision when quantitating the four analytes were better than the NASA-required minimum of 10% error and 5% deviation, respectively. Limits of detection were below the NASA requirement of 25-ppm hydrogen and 100-ppm helium; those for oxygen and argon were slightly higher than the requirement. The instrument provided adequate performance at fast data recording rates, demonstrating the utility of an ion trap mass spectrometer as a real-time quantitative monitoring device for permanent gas analysis.

  1. A laser desorption-electron impact ionization ion trap mass spectrometer for real-time analysis of single atmospheric particles

    NASA Astrophysics Data System (ADS)

    Simpson, E. A.; Campuzano-Jost, P.; Hanna, S. J.; Robb, D. B.; Hepburn, J. H.; Blades, M. W.; Bertram, A. K.

    2009-04-01

    A novel aerosol ion trap mass spectrometer combining pulsed IR laser desorption with electron impact (EI) ionization for single particle studies is described. The strengths of this instrument include a two-step desorption and ionization process to minimize matrix effects; electron impact ionization, a universal and well-characterized ionization technique; vaporization and ionization inside the ion trap to improve sensitivity; and an ion trap mass spectrometer for MSn experiments. The instrument has been used for mass spectral identification of laboratory generated pure aerosols in the 600 nm-1.1 [mu]m geometric diameter range of a variety of aromatic and aliphatic compounds, as well as for tandem mass spectrometry studies (up to MS3) of single caffeine particles. We investigate the effect of various operational parameters on the mass spectrum and fragmentation patterns. The single particle detection limit of the instrument was found to be a 325 nm geometric diameter particle (8.7 × 107 molecules or 22 fg) for 2,4-dihydroxybenzoic acid. Lower single particle detection limits are predicted to be attainable by modifying the EI pulse. The use of laser desorption-electron impact (LD-EI) in an ion trap is a promising technique for determining the size and chemical composition of single aerosol particles in real time.

  2. Novel ion traps using planar resistive electrodes: implications for miniaturized mass analyzers.

    PubMed

    Austin, Daniel E; Peng, Ying; Hansen, Brett J; Miller, Ivan W; Rockwood, Alan L; Hawkins, Aaron R; Tolley, Samuel E

    2008-10-01

    In radiofrequency ion traps, electric fields are produced by applying time-varying potentials between machined metal electrodes. The electrode shape constitutes a boundary condition and defines the field shape. This paper presents a new approach to making ion traps in which the electrodes consist of two ceramic discs, the facing surfaces of which are lithographically imprinted with sets of concentric metal rings and overlaid with a resistive material. A radial potential function can be applied to the resistive material such that the potential between the plates is quadrupolar, and ions are trapped between the plates. The electric field is independent of geometry and can be optimized electronically. The trap can produce any trapping field geometry, including both a toroidal trapping geometry and the traditional Paul-trap field. Dimensionally smaller ion trajectories, as would be produced in a miniaturized ion trap, can be achieved by increasing the potential gradient on the resistive material and operating the trap at higher frequency, rather than by making any physical changes to the trap or the electrodes. Obstacles to miniaturization of ion traps, such as fabrication tolerances, surface smoothness, electrode alignment, limited access for ionization or ion injection, and small trapping volume are addressed using this design.

  3. Increasing the Trapping Mass Range to m/z = 109—A Major Step Toward High Resolution Mass Analysis of Intact RNA, DNA and Viruses

    PubMed Central

    Wang, Xinyu; Chen, Huijuan; Lee, Jeonghoon; Reilly, Peter T. A.

    2012-01-01

    This work demonstrates sampling of singly-charged particles up to 200 nm in diameter at atmospheric pressure into vacuum and trapping large numbers (>106) at a point in front of the end cap electrode of a linear quadrupole ion guide/trap for on-demand injection into the acceleration region of a time-of-flight mass spectrometer in a well-collimated ion packet. This procedure was shown to yield trapping efficiencies that ranged from 4–5 percent for 10 nm diameter urea particles (~ 400 kDa) to 1 percent for 200 nm urea particles (~ 3 × 109 Da). Analysis of the inlet optimization procedure suggests that the inlet can be adapted to sample and trap beyond the 200 nm range. Review of the most likely places for ion loss in the sampling process suggests that the sampling and trapping efficiencies can be improved well beyond the 4–5 percent shown. Moreover, it suggests that sampling of smaller than 10 nm ions could achieve efficiencies in the 10’s of percent range thereby suggesting new levels of sensitivity can be achieved for small ions (< 200 kDa). Finally, demonstration of trapping large numbers of 200 nm (3 × 109 Da) ions for on-demand ejection in well collimated temporally discrete ion packets is a prelude to resolved mass analysis in that range. PMID:23129992

  4. Two-loop matching factors for light quark masses and three-loop mass anomalous dimensions in the RI/SMOM schemes

    SciTech Connect

    Sturm, C.; Almeida, L.

    2010-04-26

    Light quark masses can be determined through lattice simulations in regularization invariant momentum-subtraction (RI/MOM) schemes. Subsequently, matching factors, computed in continuum perturbation theory, are used in order to convert these quark masses from a RI/MOM scheme to the {ovr MS} scheme. We calculate the two-loop corrections in QCD to these matching factors as well as the three-loop mass anomalous dimensions for the RI/SMOM and RI/SMOM{sub {gamma}{mu}} schemes. These two schemes are characterized by a symmetric subtraction point. Providing the conversion factors in the two different schemes allows for a better understanding of the systematic uncertainties. The two-loop expansion coefficients of the matching factors for both schemes turn out to be small compared to the traditional RI/MOM schemes. For n{sub f} = 3 quark flavors they are about 0.6%-0.7% and 2%, respectively, of the leading order result at scales of about 2 GeV. Therefore, they will allow for a significant reduction of the systematic uncertainty of light quark mass determinations obtained through this approach. The determination of these matching factors requires the computation of amputated Green's functions with the insertions of quark bilinear operators. As a by-product of our calculation we also provide the corresponding results for the tensor operator.

  5. Two-loop matching factors for light quark masses and three-loop mass anomalous dimensions in the regularization invariant symmetric momentum-subtraction schemes

    SciTech Connect

    Almeida, Leandro G.; Sturm, Christian

    2010-09-01

    Light quark masses can be determined through lattice simulations in regularization invariant momentum-subtraction (RI/MOM) schemes. Subsequently, matching factors, computed in continuum perturbation theory, are used in order to convert these quark masses from a RI/MOM scheme to the MS scheme. We calculate the two-loop corrections in QCD to these matching factors as well as the three-loop mass anomalous dimensions for the RI/SMOM and RI/SMOM{sub {gamma}{sub {mu}} }schemes. These two schemes are characterized by a symmetric subtraction point. Providing the conversion factors in the two different schemes allows for a better understanding of the systematic uncertainties. The two-loop expansion coefficients of the matching factors for both schemes turn out to be small compared to the traditional RI/MOM schemes. For n{sub f}=3 quark flavors they are about 0.6%-0.7% and 2%, respectively, of the leading order result at scales of about 2 GeV. Therefore, they will allow for a significant reduction of the systematic uncertainty of light quark mass determinations obtained through this approach. The determination of these matching factors requires the computation of amputated Green's functions with the insertions of quark bilinear operators. As a by-product of our calculation we also provide the corresponding results for the tensor operator.

  6. MSM, an Efficient Workflow for Metabolite Identification Using Hybrid Linear Ion Trap Orbitrap Mass Spectrometer

    NASA Astrophysics Data System (ADS)

    Cho, Robert; Huang, Yingying; Schwartz, Jae C.; Chen, Yan; Carlson, Timothy J.; Ma, Ji

    2012-05-01

    Identification of drug metabolites can often yield important information regarding clearance mechanism, pharmacologic activity, or toxicity for drug candidate molecules. Additionally, the identification of metabolites can provide beneficial structure-activity insight to help guide lead optimization efforts towards molecules with optimal metabolic profiles. There are challenges associated with detecting and identifying metabolites in the presence of complex biological matrices, and new LC-MS technologies have been developed to meet these challenges. In this report, we describe the development of an experimental approach that applies unique features of the hybrid linear ion trap Orbitrap mass spectrometer to streamline in vitro and in vivo metabolite identification experiments. The approach, referred to as MSM, utilizes multiple collision cells, dissociation methods, mass analyzers, and detectors. With multiple scan types and different dissociation modes built into one experimental method, along with flexible post-acquisition analysis options, the MSM workflow offers an attractive option to fast and reliable identification of metabolites in different kinds of in vitro and in vivo samples. The MSM workflow was successfully applied to metabolite identification analysis of verapamil in both in vitro rat hepatocyte incubations and in vivo rat bile samples.

  7. MALDI-TOF mass spectrometry analysis of amphipol-trapped membrane proteins.

    PubMed

    Bechara, Chérine; Bolbach, Gérard; Bazzaco, Paola; Sharma, K Shivaji; Durand, Grégory; Popot, Jean-Luc; Zito, Francesca; Sagan, Sandrine

    2012-07-17

    Amphipols (APols) are amphipathic polymers with the ability to substitute detergents to keep membrane proteins (MPs) soluble and functional in aqueous solutions. APols also protect MPs against denaturation. Here, we have examined the ability of APol-trapped MPs to be analyzed by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF-MS). For that purpose, we have used ionic and nonionic APols and as model proteins (i) the transmembrane domain of Escherichia coli outer membrane protein A, a β-barrel, eubacterial MP, (ii) Halobacterium salinarum bacteriorhodopsin, an α-helical archaebacterial MP with a single cofactor, and (iii, iv) two eukaryotic MP complexes comprising multiple subunits and many cofactors, cytochrome b(6)f from the chloroplast of the green alga Chlamydomonas reinhardtii and cytochrome bc(1) from beef heart mitochondria. We show that these MP/APol complexes can be readily analyzed by MALDI-TOF-MS; most of the subunits and some lipids and cofactors were identified. APols alone, even ionic ones, had no deleterious effects on MS signals and were not detected in mass spectra. Thus, the combination of MP stabilization by APols and MS analyses provides an interesting new approach to investigating supramolecular interactions in biological membranes.

  8. Global nickel anomaly links Siberian Traps eruptions and the latest Permian mass extinction.

    PubMed

    Rampino, Michael R; Rodriguez, Sedelia; Baransky, Eva; Cai, Yue

    2017-09-29

    Anomalous peaks of nickel abundance have been reported in Permian-Triassic boundary sections in China, Israel, Eastern Europe, Spitzbergen, and the Austrian Carnic Alps. New solution ICP-MS results of enhanced nickel from P-T boundary sections in Hungary, Japan, and Spiti, India suggest that the nickel anomalies at the end of the Permian were a worldwide phenomenon. We propose that the source of the nickel anomalies at the P-T boundary were Ni-rich volatiles released by the Siberian volcanism, and by coeval Ni-rich magma intrusions. The peaks in nickel abundance correlate with negative δ(13)C and δ(18)O anomalies, suggesting that explosive reactions between magma and coal during the Siberian flood-basalt eruptions released large amounts of CO2 and CH4 into the atmosphere, causing severe global warming and subsequent mass extinction. The nickel anomalies may provide a timeline in P-T boundary sections, and the timing of the peaks supports the Siberian Traps as a contributor to the latest Permian mass extinction.

  9. Degradation study of enniatins by liquid chromatography-triple quadrupole linear ion trap mass spectrometry.

    PubMed

    Serrano, A B; Meca, G; Font, G; Ferrer, E

    2013-12-15

    Enniatins A, A1, B and B1 (ENs) are mycotoxins produced by Fusarium spp. and are normal contaminants of cereals and derivate products. In this study, the stability of ENs was evaluated during food processing by simulation of pasta cooking. Thermal treatments at different incubation times (5, 10 and 15 min) and different pH (4, 7 and 10) were applied in an aqueous system and pasta resembling system (PRS). The concentrations of the targeted mycotoxins were determined using liquid chromatography coupled to tandem mass spectrometry. High percentages of ENs reduction (81-100%) were evidenced in the PRS after the treatments at 5, 10 and 15 min of incubation. In contrast to the PRS, an important reduction of the ENs was obtained in the aqueous system after 15 min of incubation (82-100%). In general, no significant differences were observed between acid, neutral and basic solutions. Finally, several ENs degradation products were identified using the technique of liquid chromatography-triple quadrupole linear ion trap mass spectrometry.

  10. Planetary populations in the mass-period diagram: A statistical treatment of exoplanet formation and the role of planet traps

    SciTech Connect

    Hasegawa, Yasuhiro; Pudritz, Ralph E. E-mail: pudritz@physics.mcmaster.ca

    2013-11-20

    The rapid growth of observed exoplanets has revealed the existence of several distinct planetary populations in the mass-period diagram. Two of the most surprising are (1) the concentration of gas giants around 1 AU and (2) the accumulation of a large number of low-mass planets with tight orbits, also known as super-Earths and hot Neptunes. We have recently shown that protoplanetary disks have multiple planet traps that are characterized by orbital radii in the disks and halt rapid type I planetary migration. By coupling planet traps with the standard core accretion scenario, we showed that one can account for the positions of planets in the mass-period diagram. In this paper, we demonstrate quantitatively that most gas giants formed at planet traps tend to end up around 1 AU, with most of these being contributed by dead zones and ice lines. We also show that a large fraction of super-Earths and hot Neptunes are formed as 'failed' cores of gas giants—this population being constituted by comparable contributions from dead zone and heat transition traps. Our results are based on the evolution of forming planets in an ensemble of disks where we vary only the lifetimes of disks and their mass accretion rates onto the host star. We show that a statistical treatment of the evolution of a large population of planetary cores caught in planet traps accounts for the existence of three distinct exoplanetary populations—the hot Jupiters, the more massive planets around r = 1 AU, and the short-period super-Earths and hot Neptunes. There are very few populations that feed into the large orbital radii characteristic of the imaged Jovian planet, which agrees with recent surveys. Finally, we find that low-mass planets in tight orbits become the dominant planetary population for low-mass stars (M {sub *} ≤ 0.7 M {sub ☉}).

  11. Segmentation techniques evaluation based on a single compact breast mass classification scheme

    NASA Astrophysics Data System (ADS)

    Matheus, Bruno R. N.; Marcomini, Karem D.; Schiabel, Homero

    2016-03-01

    In this work some segmentation techniques are evaluated by using a simple centroid-based classification system regarding breast mass delineation in digital mammography images. The aim is to determine the best one for future CADx developments. Six techniques were tested: Otsu, SOM, EICAMM, Fuzzy C-Means, K-Means and Level-Set. All of them were applied to segment 317 mammography images from DDSM database. A single compact set of attributes was extracted and two centroids were defined, one for malignant and another for benign cases. The final classification was based on proximity with a given centroid and the best results were presented by the Level-Set technique with a 68.1% of Accuracy, which indicates this method as the most promising for breast masses segmentation aiming a more precise interpretation in schemes CADx.

  12. Quantification of Tetramethylenedisulfotetramine (TETS) in Various Food Matrices by Solid Phase Extraction Liquid ChromatographyIon Trap Mass Spectrometry

    DTIC Science & Technology

    2017-04-01

    QUANTIFICATION OF TETRAMETHYLENEDISULFOTETRAMINE (TETS) IN VARIOUS FOOD MATRICES BY SOLID-PHASE EXTRACTION...Quantification of Tetramethylenedisulfotetramine (TETS) in Various Food Matrices by Solid-Phase Extraction Liquid Chromatography–Ion Trap Mass...method for the quantitation of TETS as spiked into various food matrices , including fruit juices, egg, hot dog, chicken nuggets, turkey deli meat, and

  13. Mass trapping is as effective as ground bait sprays for the control of Anastrepha (Diptera: Tephritidae) fruit flies in mango orchards.

    PubMed

    Villalobos, Jorge; Flores, Salvador; Liedo, Pablo; Malo, Edi A

    2017-10-01

    Anastrepha fruit flies are considered one of the main phytosanitary problems for the fresh fruit industry in the USA, Caribbean islands and Latin America. Since 1994, the Mexican government has implemented the National Fruit Fly Program using an area-wide integrated pest management approach. In this paper, we evaluate the effectiveness of mass trapping and compare it with ground GF-120 spraying against Anastrepha obliqua and Anastrepha ludens populations in mango cv. Ataulfo orchards. Multilure® traps baited with Ceratrap® or Biolure® captured significantly more fruit flies than Captor 300 in field cage tests. Mass trapping and ground GF-120 spray significantly suppressed fruit fly populations compared with untreated plots. In Multilure traps placed in untreated plots, we captured significantly more fruit flies than in treated plots with mass trapping or GF-120 sprays. Plots treated with either mass trapping or GF-120 sprays reduced the percentage of infested fruit significantly compared with untreated plots. There was no difference between mass trapping and GF-120 ground bait spraying. Our results demonstrate that mass trapping was as effective as GF-120 ground spraying for the control of fruit flies in mango cv. Ataulfo orchards. The suppression effect of mass trapping was similar to GF-120 ground bait spraying. © 2017 Society of Chemical Industry. © 2017 Society of Chemical Industry.

  14. A new and fast image feature selection method for developing an optimal mammographic mass detection scheme

    PubMed Central

    Tan, Maxine; Pu, Jiantao; Zheng, Bin

    2014-01-01

    Purpose: Selecting optimal features from a large image feature pool remains a major challenge in developing computer-aided detection (CAD) schemes of medical images. The objective of this study is to investigate a new approach to significantly improve efficacy of image feature selection and classifier optimization in developing a CAD scheme of mammographic masses. Methods: An image dataset including 1600 regions of interest (ROIs) in which 800 are positive (depicting malignant masses) and 800 are negative (depicting CAD-generated false positive regions) was used in this study. After segmentation of each suspicious lesion by a multilayer topographic region growth algorithm, 271 features were computed in different feature categories including shape, texture, contrast, isodensity, spiculation, local topological features, as well as the features related to the presence and location of fat and calcifications. Besides computing features from the original images, the authors also computed new texture features from the dilated lesion segments. In order to select optimal features from this initial feature pool and build a highly performing classifier, the authors examined and compared four feature selection methods to optimize an artificial neural network (ANN) based classifier, namely: (1) Phased Searching with NEAT in a Time-Scaled Framework, (2) A sequential floating forward selection (SFFS) method, (3) A genetic algorithm (GA), and (4) A sequential forward selection (SFS) method. Performances of the four approaches were assessed using a tenfold cross validation method. Results: Among these four methods, SFFS has highest efficacy, which takes 3%–5% of computational time as compared to GA approach, and yields the highest performance level with the area under a receiver operating characteristic curve (AUC) = 0.864 ± 0.034. The results also demonstrated that except using GA, including the new texture features computed from the dilated mass segments improved the AUC

  15. A new and fast image feature selection method for developing an optimal mammographic mass detection scheme.

    PubMed

    Tan, Maxine; Pu, Jiantao; Zheng, Bin

    2014-08-01

    Selecting optimal features from a large image feature pool remains a major challenge in developing computer-aided detection (CAD) schemes of medical images. The objective of this study is to investigate a new approach to significantly improve efficacy of image feature selection and classifier optimization in developing a CAD scheme of mammographic masses. An image dataset including 1600 regions of interest (ROIs) in which 800 are positive (depicting malignant masses) and 800 are negative (depicting CAD-generated false positive regions) was used in this study. After segmentation of each suspicious lesion by a multilayer topographic region growth algorithm, 271 features were computed in different feature categories including shape, texture, contrast, isodensity, spiculation, local topological features, as well as the features related to the presence and location of fat and calcifications. Besides computing features from the original images, the authors also computed new texture features from the dilated lesion segments. In order to select optimal features from this initial feature pool and build a highly performing classifier, the authors examined and compared four feature selection methods to optimize an artificial neural network (ANN) based classifier, namely: (1) Phased Searching with NEAT in a Time-Scaled Framework, (2) A sequential floating forward selection (SFFS) method, (3) A genetic algorithm (GA), and (4) A sequential forward selection (SFS) method. Performances of the four approaches were assessed using a tenfold cross validation method. Among these four methods, SFFS has highest efficacy, which takes 3%-5% of computational time as compared to GA approach, and yields the highest performance level with the area under a receiver operating characteristic curve (AUC) = 0.864 ± 0.034. The results also demonstrated that except using GA, including the new texture features computed from the dilated mass segments improved the AUC results of the ANNs optimized

  16. Volcanism, Impacts and Mass Extinctions: A case study of the Deccan Traps and its global effects

    NASA Astrophysics Data System (ADS)

    Keller, G.

    2012-12-01

    The nature and causes of mass extinctions in the geological past have remained topics of intense scientific debate for the past three decades. Central to this debate is the question of whether one, or several large bolide impacts, the eruption of large igneous provinces (LIP) or a combination of the two were the primary mechanisms driving the environmental changes that are universally regarded as the proximate causes for four of the five major Phanerozoic extinction events. Recent years have seen a revolution in our understanding of interplanetary environments, LIP eruptions and their environmental effects such that the simple impact-kill scenario no longer seems an adequate explanation for the Cretaceous-Tertiary boundary (KTB) or any other mass extinction. The KTB is the only mass extinction associated with both impact (Chixculub) and flood basalts (Deccan Traps) and therefore an excellent case study to evaluate the potential causes and effects. Deccan eruptions likely occurred as "pulses", with some gigantic megaflows 1500 km across India and with estimated volumes >10,000 km3 that may have erupted over very short time intervals. For comparison, the largest historical basalt eruption in 1783 in Iceland (Laki) ejected some 15 km3 of lava in about a year. A single Deccan megaflow would have been equivalent to 667 Laki. The vast amount of carbon and sulphur dioxides injected into the atmosphere from just one Deccan megaflow would have been on the same order of magnitude as those estimated for the Chicxulub impact. Deccan Traps erupted in three main phases with 6% total Deccan volume in phase-1 (base C30n), 80% in phase-2 (C29r) and 14% in phase-3 (C29n). Phase-2 and phase-3 each produced four giant megaflows leading to the KTB mass extinction and the long delayed biotic recovery, respectively. Data from infra- and intertrappean sediments of these megaflows drilled in the Krishna-Godavari Basin by India's Oil and Natural Gas Corporation reveal swift and devastating

  17. Evaluating the temporal link between Siberian Traps magmatism and the end-Permian mass extinction (Invited)

    NASA Astrophysics Data System (ADS)

    Burgess, S. D.; Bowring, S. A.

    2013-12-01

    Interest in Large Igneous Provinces as agents for massive climatic and biological change is steadily increasing, though the temporal constraints on both are seldom precise enough to allow detailed testing of a causal relationship. The end-Permian mass extinction is one of the most biologically important and intensely studied events in Earth history and has been linked to many possible trigger mechanisms, from voluminous volcanism to bolide impact. Proposed kill mechanisms range from acidic and/or anoxic oceans to a cocktail of toxic gases, although the link between trigger and kill mechanisms is unconstrained due to the lack of a high-precision timeline. Critical to assessing the plausibility of different trigger and kill mechanisms is an accurate age model for the biotic crisis and the perturbations to the global carbon cycle and ocean chemistry. Recent work using the EARTHTIME U/Pb tracer solution has refined the timing of the onset and duration of the marine mass extinction event and the earliest Triassic recovery at the GSSP for the Permian-Triassic boundary in Meishan, China. This work constrains the mass extinction duration to less than 100 kyr and provides an accurate and precise time point for the onset of extinction, against which the timing of potential trigger mechanisms may be compared. For more than two decades, eruption and emplacement of the Siberian traps has been implicated as a potential trigger of the end-Permian extinction. In this scenario, magmatism drives the biotic crisis through mobilization of volatiles from the sedimentary rock with which intruding and erupting magmas interact. Massive volatile release is believed to trigger major changes in atmospheric chemistry and temperature, both of which have been proposed as kill mechanisms. Current temporal constrains on the timing and duration of the Siberian magmatism are an order of magnitude less precise than those for the mass extinction event and associated environmental perturbations

  18. A Dual Source Ion Trap Mass Spectrometer for the Mars Organic Molecule Analyzer of ExoMars 2018

    NASA Technical Reports Server (NTRS)

    Brickerhoff, William B.; vanAmerom, F. H. W.; Danell, R. M.; Arevalo, R.; Atanassova, M.; Hovmand, L.; Mahaffy, P. R.; Cotter, R. J.

    2011-01-01

    We present details on the objectives, requirements, design and operational approach of the core mass spectrometer of the Mars Organic Molecule Analyzer (MOMA) investigation on the 2018 ExoMars mission. The MOMA mass spectrometer enables the investigation to fulfill its objective of analyzing the chemical composition of organic compounds in solid samples obtained from the near surface of Mars. Two methods of ionization are realized, associated with different modes of MOMA operation, in a single compact ion trap mass spectrometer. The stringent mass and power constraints of the mission have led to features such as low voltage and low frequency RF operation [1] and pulse counting detection.

  19. In situ chemical ionization in ion trap mass spectrometry--the beneficial influence of isobutane as a reagent gas.

    PubMed

    Bouchonnet, Stéphane; Kinani, Saïd; Sablier, Michel; Pirnay, Stéphane

    2007-01-01

    We report a comparison of the ionization yields provided by the most common reagents (methane, ammonia, methanol, acetonitrile, isobutane) performing in situ chemical ionization with an ion trap mass spectrometer. Four molecules were chosen in the medical field to illustrate experimental results: alprazolam, diazepam, flunitrazepam and acetaminophen. Under usual operational conditions, relative abundances of protonated ions appreciably depend on the reagents. The greatest abundance of MH+ ions was obtained with isobutane while observed intensities for MH+ ions varied from 73% for methanol and ammonia to about 23% for acetonitrile and methane. Results were temptatively rationalized comparing energies of formation of the reagent ions and storage efficiency in the trapping field.

  20. Separation and characterization of unknown impurities in cefonicid sodium by trap-free two-dimensional liquid chromatography combined with ion trap time-of-flight mass spectrometry.

    PubMed

    Wang, Jian; Xu, Yu; Zhang, Yunfeng; Wang, Hong; Zhong, Weihui

    2017-09-30

    Seven unknown antibiotic impurities in cefonicid sodium were separated and characterized by a trap-free two-dimensional liquid chromatography coupled to high-resolution ion-trap time-of-flight mass spectrometry (2D-LC/IT-TOF MS) using both positive and negative modes of electrospray ionization. Trap-free 2D-LC and an online demineralization technique made it possible to characterize cefonicid sodium under the conditions of the official standard, and the TIC chromatogram obtained by LC/MS was in conformity with the LC chromatogram obtained by the official analytical method in the peak sequence of impurities. In the first dimension, the column was a GRACE Alltima C18 (250 mm × 4.6 mm, 5 μm), and the gradient elution used 0.02 mol·L(-1) ammonium dihydrogen phosphate solution and methanol as mobile phase. In the second dimension, the analytical column was a Shimadzu Shim-pack GISS C18 (50 mm × 2.1 mm, 1.9 μm) with 10 mmol·L(-1) ammonium formate solution and methanol as mobile phase. Full scan LC/MS was first executed to obtain the exact m/z values of the molecules. Then LC/MS(2) and LC-MS(3) experiments were performed on the compounds of interest. The structures of seven unknown degradation products in cefonicid sodium were deduced based on the high-resolution MS(n) data using both positive and negative mode. The problem of incompatibility between the non-volatile salt mobile phase and mass spectrometry was solved completely by multidimensional heart-cutting approaches and an online demineralization technique, which is worthy of widespread use and application for the advantages of stability and repeatability. Copyright © 2017 John Wiley & Sons, Ltd.

  1. Use of Early Ripening Cultivars to Avoid Infestation and Mass Trapping to Manage Drosophila suzukii (Diptera: Drosophilidae) in Vaccinium corymbosum (Ericales: Ericaceae).

    PubMed

    Hampton, Emily; Koski, Carissa; Barsoian, Olivia; Faubert, Heather; Cowles, Richard S; Alm, Steven R

    2014-10-01

    Use of early ripening highbush blueberry cultivars to avoid infestation and mass trapping were evaluated for managing spotted wing drosophila, Drosophila suzukii (Matsumura). Fourteen highbush blueberry cultivars were sampled for spotted wing drosophila infestation. Most 'Earliblue', 'Bluetta', and 'Collins' fruit were harvested before spotted wing drosophila oviposition commenced, and so escaped injury. Most fruit from 'Bluejay', 'Blueray', and 'Bluehaven' were also harvested before the first week of August, after which spotted wing drosophila activity led to high levels of blueberry infestation. In a separate experiment, damage to cultivars was related to the week in which fruit were harvested, with greater damage to fruit observed as the season progressed. Attractant traps placed within blueberry bushes increased nearby berry infestation by 5%, irrespective of cultivar and harvest date. The significant linear reduction in infestation with increasing distance from the attractant trap suggests that traps are influencing fly behavior to at least 5.5 m. Insecticides applied to the exterior of traps, compared with untreated traps, revealed that only 10-30% of flies visiting traps enter the traps and drown. Low trap efficiency may jeopardize surrounding fruits by increasing local spotted wing drosophila activity. To protect crops, traps for mass trapping should be placed in a perimeter outside fruit fields and insecticides need to be applied to the surface of traps or on nearby fruit to function as an attract-and-kill strategy.

  2. Characterization of impurities in tylosin using dual liquid chromatography combined with ion trap mass spectrometry.

    PubMed

    Chopra, Shruti; Van Schepdael, Ann; Hoogmartens, Jos; Adams, Erwin

    2013-03-15

    Investigation of unknown impurities in a tylosin sample was performed using liquid chromatography coupled to mass spectrometry (LC/MS). Separation was performed according to the recently described LC-UV method of Ashenafi et al. (2011) [14]. This method was reported to have a good selectivity as it was able to separate the four main components of tylosin from the already known and 23 unknown impurities. However, as this method uses a mobile phase with non-volatile constituents, direct characterization of these impurities using LC/MS was not possible. The impurity fractions were therefore first collected and then desalted before sending them to the MS. Identification of the impurities in the tylosin sample was performed with a quadruple ion trap (IT) MS, with an electrospray ionization (ESI) source in the positive ion mode. The structure of the impurities was deduced by comparing their fragmentation pattern with those of the main components of tylosin. As several peaks in the LC-UV method contained multiple compounds, using this method in total 41 new impurities were (partly) characterized. Copyright © 2012 Elsevier B.V. All rights reserved.

  3. Determination of cannabinoids in cannabis products using liquid chromatography-ion trap mass spectrometry.

    PubMed

    Stolker, A A M; van Schoonhoven, J; de Vries, A J; Bobeldijk-Pastorova, I; Vaes, W H J; van den Berg, R

    2004-11-26

    A method was developed and validated for the simultaneous determination of five cannabinoids, viz. cannabidiol (CBD), cannabidiol acid (CBD-COOH), cannabinol (CBN), delta9-tetrahydrocannabinol (THC), and 3'-carboxy-delta9-all-trans-tetrahydrocannabinol (THC-COOH) in cannabis products. The cannabinoids were extracted from the grinded cannabis samples with a mixture of methanol-chloroform and analysed using liquid chromatography with ion-trap-mass-spectrometry (LC-IT-MSn). For quantification the two most abundant diagnostic MS-MS ions of the analyte in the sample and external standard were monitored. For confirmation purposes the EU criteria as described in Commission Decision 2002/657/EC were followed. Fully satisfactory results were obtained, that is, unequivocal confirmation according to the most stringent EU criteria was possible. The limits of quantification were 0.1 g/kg for CBD, 0.04 g/kg for CBD-COOH, 0.03 g/kg for CBN, 0.28 g/kg for THC and 9.9 g/kg for THC-COOH. The repeatabilities, defined by R.S.D., were 2% for CBN, THC and THC-COOH at the concentration levels of respectively 0.023, 3.3 and 113 g/kg and 5% for CBD-COOH at the level of 0.34 g/kg (n = 6).

  4. Detection of griseofulvin in a marine strain of Penicillium waksmanii by ion trap mass spectrometry.

    PubMed

    Petit, K E; Mondeguer, F; Roquebert, M F; Biard, J F; Pouchus, Y F

    2004-07-01

    A marine strain of Penicillium waksmanii Zaleski was isolated from a sample of seawater from shellfish-farming area in the Loire estuary (France). The in vitro marine culture showed an important antifungal activity. Bioassay-guided fractionation was used to purify the crude extract. Dereplication by electrospray-ion trap/mass spectrometry (ESI-IT/MS) afforded the identification of the antifungal compound, after a semi-purification consisting of two stages. A comparison of the ionic composition between the active and the non-active fractions allowed the detection of a monocharged ion at m/z 353 containing a chlorine atom, which could be attributed to the antifungal griseofulvin [C17H17ClO6+H]+. Multi-stage fragmentation (MSn) confirmed the identity of the m/z 353 ion of the antifungal fraction as griseofulvin. It is the first description of griseofulvin production by a strain of P. waksmanii and the first chemical study of a strain of this species isolated from marine temperate cold water.

  5. [Determination of 21 fragrance allergens in toys by gas chromatography-ion trap mass spectrometry].

    PubMed

    Lü, Qing; Zang, Qing; Bai, Hua; Li, Haiyu; Kang, Suyuan; Wang, Chao

    2012-05-01

    A method of gas chromatography-ion trap mass spectrometry (GC-IT-MS) was developed for the determination of 21 fragrance allergens in sticker toys, plush toys and plastic toys. The experimental conditions, such as sample pretreatment conditions, and the analytical conditions of GC-IT-MS, were optimized. The sticker toy samples and plush toy samples were extracted with acetone by ultrasonic wave, and the extracts were separated on an Agilent HP-1 MS column (50 m x 0.2 mm x 0.5 microm), then determined by IT-MS and quantified by external standard method. The plastic toy samples were extracted by the dissolution-precipitation approach, cleaned up with an Envi-carb solid phase extraction column and concentrated by rotary evaporation and nitrogen blowing, then determined by GC-IT-MS and quantified by external standard method. The calibration curves showed good linearity in the range of 0.002-50 mg/L with the correlation coefficients greater than 0.996 8. The limits of quantification (LOQ, S/N > 10) were 0.02-40 mg/kg. The average recoveries of the target compounds spiked in the sample at three concentration levels were in the range of 82.2%-110.8% with the relative standard deviations (RSDs) of 0.6%-10.5%. These results show that this method is accurate and sensitive for the qualitative and quantitative determination of the 21 fragrance allergens in the 3 types of toys.

  6. Rapid determination of nicotine in urine by direct thermal desorption ion trap mass spectrometry

    SciTech Connect

    Wise, M.B.; Ilgner, R.H.; Guerin, M.R.

    1990-01-01

    The measurement of nicotine and cotinine in physiological fluids (urine, blood serum, and saliva) is widely used as a means of assessing human exposure to environmental tobacco smoke (ETS). Although numerous analytical methods exist for these measurements, they generally involve extensive sample preparation which increases cost and decreases sample throughput. We report the use of thermal desorption directly into an ion trap mass spectrometer (ITMS) for the rapid determination of nicotine and cotinine in urine. A 1{mu}L aliquot of urine is injected into a specially designed inlet and flash vaporized directly into an ITMS through an open-split capillary restrictor interface. Isobutane chemical ionization is used to generate (M+H){sup +} ions of the analytes and collision induced dissociation is used to generate characteristic fragment ions which are used to confirm their identity. Quantification is achieved by integrating the ion current for the characteristic ions and comparing with an external working curve. Detection limits are approximately 50 pg per analyte and the sample turnaround time is approximately 3 minutes without the need for extensive sample preparation. 12 refs., 5 figs.

  7. Determination of alpha-amanitin in serum and liver by multistage linear ion trap mass spectrometry.

    PubMed

    Filigenzi, Michael S; Poppenga, Robert H; Tiwary, Asheesh K; Puschner, Birgit

    2007-04-18

    This paper describes a rapid LC-MS/MS/MS method for the analysis of alpha-amanitin in serum and liver. Serum was initially prepared by precipitation of proteins with acetonitrile and subsequent removal of acetonitrile with methylene chloride. Liver was prepared by homogenization with aqueous acetonitrile and subsequent removal of acetonitrile using methylene chloride. For both matrices, the aqueous phase was then extracted using mixed-mode C18/cation exchange SPE cartridges and analyzed on a linear ion trap LC-MS system. Standards were prepared in extracts of control matrix. Seven replicate fortifications of serum at 0.001 mug/g (1 ng/g) of alpha-amanitin gave a mean recovery of 95% with 8.8% CV (relative standard deviation) and a calculated method detection limit of 0.26 ng/g. Seven replicates of control liver fortified at 1 ng/g gave a mean recovery of 98% with 17% CV and a calculated method detection limit of 0.50 ng/g. This is the first report of a positive mass spectrometric identification and quantitation of alpha-amanitin in serum and liver from suspect human and animal intoxications.

  8. Glass buildings on river banks as ``polarized light traps'' for mass-swarming polarotactic caddis flies

    NASA Astrophysics Data System (ADS)

    Kriska, György; Malik, Péter; Szivák, Ildikó; Horváth, Gábor

    2008-05-01

    The caddis flies Hydropsyche pellucidula emerge at dusk from the river Danube and swarm around trees and bushes on the river bank. We document here that these aquatic insects can also be attracted en masse to the vertical glass surfaces of buildings on the river bank. The individuals lured to dark, vertical glass panes land, copulate, and remain on the glass for hours. Many of them are trapped by the partly open, tiltable windows. In laboratory choice experiments, we showed that ovipositing H. pellucidula are attracted to highly and horizontally polarized light stimulating their ventral eye region and, thus, have positive polarotaxis. In the field, we documented that highly polarizing vertical black glass surfaces are significantly more attractive to both female and male H. pellucidula than weakly polarizing white ones. Using video polarimetry, we measured the reflection-polarization characteristics of vertical glass surfaces of buildings where caddis flies swarmed. We propose that after its emergence from the river, H. pellucidula is attracted to buildings by their dark silhouettes and the glass-reflected, horizontally polarized light. After sunset, this attraction may be strengthened by positive phototaxis elicited by the buildings’ lights. The novelty of this visual ecological phenomenon is that the attraction of caddis flies to vertical glass surfaces has not been expected because vertical glass panes do not resemble the horizontal surface of waters from which these insects emerge and to which they must return to oviposit.

  9. Simulation of lean NOx trap performance with microkinetic chemistry and without mass transfer.

    SciTech Connect

    Larson, Rich; Daw, C. Stuart; Pihl, Josh A.; Chakravarthy, V. Kalyana

    2011-08-01

    A microkinetic chemical reaction mechanism capable of describing both the storage and regeneration processes in a fully formulated lean NO{sub x} trap (LNT) is presented. The mechanism includes steps occurring on the precious metal, barium oxide (NO{sub x} storage), and cerium oxide (oxygen storage) sites of the catalyst. The complete reaction set is used in conjunction with a transient plug flow reactor code to simulate not only conventional storage/regeneration cycles with a CO/H{sub 2} reductant, but also steady flow temperature sweep experiments that were previously analyzed with just a precious metal mechanism and a steady state code. The results show that NO{sub x} storage is not negligible during some of the temperature ramps, necessitating a re-evaluation of the precious metal kinetic parameters. The parameters for the entire mechanism are inferred by finding the best overall fit to the complete set of experiments. Rigorous thermodynamic consistency is enforced for parallel reaction pathways and with respect to known data for all of the gas phase species involved. It is found that, with a few minor exceptions, all of the basic experimental observations can be reproduced with these purely kinetic simulations, i.e., without including mass-transfer limitations. In addition to accounting for normal cycling behavior, the final mechanism should provide a starting point for the description of further LNT phenomena such as desulfation and the role of alternative reductants.

  10. Decomposition of cyclohexane ion induced by intense femtosecond laser fields by ion-trap time-of-flight mass spectrometry.

    PubMed

    Yamazaki, Takao; Watanabe, Yusuke; Kanya, Reika; Yamanouchi, Kaoru

    2016-01-14

    Decomposition of cyclohexane cations induced by intense femtosecond laser fields at the wavelength of 800 nm is investigated by ion-trap time-of-flight mass spectrometry in which cyclohexane cations C6H12 (+) stored in an ion trap are irradiated with intense femtosecond laser pulses and the generated fragment ions are recorded by time-of-flight mass spectrometry. The various fragment ion species, C5Hn (+) (n = 7, 9), C4Hn (+) (n = 5-8), C3Hn (+) (n = 3-7), C2Hn (+) (n = 2-6), and CH3 (+), identified in the mass spectra show that decomposition of C6H12 (+) proceeds efficiently by the photo-irradiation. From the laser intensity dependences of the yields of the fragment ion species, the numbers of photons required for producing the respective fragment ions are estimated.

  11. Improved differential diagnosis of breast masses on ultrasonographic images with a computer-aided diagnosis scheme for determining histological classifications.

    PubMed

    Kashikura, Yumi; Nakayama, Ryohei; Hizukuri, Akiyoshi; Noro, Aya; Nohara, Yuki; Nakamura, Takashi; Ito, Minori; Kimura, Hiroko; Yamashita, Masako; Hanamura, Noriko; Ogawa, Tomoko

    2013-04-01

    A computer-aided diagnosis (CAD) scheme for determining histological classifications of breast masses is expected to be useful for clinicians in making a differential diagnosis. The purpose of this study was to evaluate the usefulness of using the CAD scheme on ultrasonographic images. The database consisted of 390 breast ultrasonographic images with masses. Three experienced clinicians independently provided subjective ratings on the likelihood of malignancy for each of the 390 masses. Fifty benign masses (25 cysts and 25 fibroadenomas) and 50 malignant masses (25 noninvasive ductal carcinomas and 25 invasive ductal carcinomas) were selected as unknown cases for an observer study based on a stratified randomization method with the ratings. The likelihood of the histological classification in each unknown case was evaluated by the CAD scheme with image features that clinicians commonly use for describing masses. In the observer study, seven observers provided their confidence levels regarding the malignancy of the unknown case before and after viewing the likelihood of the histological classification. The usefulness of the CAD scheme was evaluated with a multireader multicase receiver operating characteristic (ROC) analysis. The areas under the ROC curves (AUCs) for all observers were improved by use of the CAD scheme. The average AUC increased from 0.716 without to 0.864 with the CAD scheme (P = .006). The presentation of the likelihood of the histological classification evaluated by the CAD scheme improved the clinicians' performance and therefore would be useful in making a differential diagnosis of masses on ultrasonographic images. Copyright © 2013 AUR. Published by Elsevier Inc. All rights reserved.

  12. Liquid chromatography with electrospray ion trap mass spectrometry for the determination of five azaspiracids in shellfish.

    PubMed

    Lehane, M; Braña-Magdalena, A; Moroney, C; Furey, A; James, K J

    2002-03-15

    Azaspiracid poisoning (AZP) is a new human toxic syndrome that is caused by the consumption of shellfish that have been feeding on harmful marine microalgae. A liquid chromatography-mass spectrometry (LC-MS) method has been developed for the determination of the three most prevalent toxins, azaspiracid (AZA1), 8-methylazaspiracid (AZA2) and 22-demethylazaspiracid (AZA3) as well as the isomeric hydroxylated analogues, AZA4 and AZA5. Separation of five azaspiracids was achieved on a C18 column (Luna-2, 150 x 2 mm, 5 microm) with isocratic elution using acetonitrile-water containing trifluoroacetic acid and ammonium acetate as eluent modifiers. Using an electrospray ionisation (ESI) source with an ion-trap mass spectrometer, the spectra showed the protonated molecules, [M+H]+, with most major product ions due to the sequential loss of two water molecules. A characteristic fragmentation pathway that was observed in each azaspiracid was due to the cleavage of the A-ring at C9-C10 for each toxin. It was possible to select unique ion combinations to distinguish between the isomeric azaspiracids, AZA4 and AZA5. Highly sensitive LC-MS3 analytical methods were compared and the detection limits were 5-40 pg on-column. Linear calibrations were obtained for AZA1 in shellfish in the range 0.05-1.00 microg/ml (r2 = 0.9974) and good reproducibility was observed with a relative standard deviation (%RSD) of 1.8 for 0.9 microg AZAI/ml (n=5). The %RSD values for the minor toxins, AZA4 and AZA5, using LC-MS3 (A-ring fragmentation) were 12.3 and 8.1 (0.02 microg/ml; n=7), respectively. The selectivity of toxin determination was enhanced using LC-MS-MS with high energy WideBand activation.

  13. An efficient light trapping scheme based on textured conductive photonic crystal back reflector for performance improvement of amorphous silicon solar cells

    SciTech Connect

    Chen, Peizhuan; Hou, Guofu Huang, Qian; Zhao, Jing; Zhang, Jianjun Ni, Jian; Zhang, Xiaodan; Zhao, Ying; Fan, QiHua

    2014-08-18

    An efficient light trapping scheme named as textured conductive photonic crystal (TCPC) has been proposed and then applied as a back-reflector (BR) in n-i-p hydrogenated amorphous silicon (a-Si:H) solar cell. This TCPC BR combined a flat one-dimensional photonic crystal and a randomly textured surface of chemically etched ZnO:Al. Total efficiency enhancement was obtained thanks to the sufficient conductivity, high reflectivity and strong light scattering of the TCPC BR. Unwanted intrinsic losses of surface plasmon modes are avoided. An initial efficiency of 9.66% for a-Si:H solar cell was obtained with short-circuit current density of 14.74 mA/cm{sup 2}, fill factor of 70.3%, and open-circuit voltage of 0.932 V.

  14. Penning trap mass measurements of {sup 99-109}Cd with the ISOLTRAP mass spectrometer, and implications for the rp process

    SciTech Connect

    Breitenfeldt, M.; Schweikhard, L.; Audi, G.; Lunney, D.; Naimi, S.; Beck, D.; Herfurth, F.; Blaum, K.; George, S.; Herlert, A.; Kowalska, M.; Kellerbauer, A.; Kluge, H.-J.; Neidherr, D.; Schatz, H.; Schwarz, S.

    2009-09-15

    Penning trap mass measurements of neutron-deficient Cd isotopes {sup 99-109}Cd have been performed with the ISOLTRAP mass spectrometer at ISOLDE/CERN, all with relative mass uncertainties below 3{center_dot}10{sup -8}. A new mass evaluation has been performed. The mass of {sup 99}Cd has been determined for the first time, which extends the region of accurately known mass values toward the doubly magic nucleus {sup 100}Sn. The implication of the results on the reaction path of the rp process in stellar x-ray bursts is discussed. In particular, the uncertainty of the abundance and the overproduction created by the rp-process for the mass A=99 are demonstrated by reducing the uncertainty of the proton-separation energy of {sup 100}InS{sub p}({sup 100}In) by a factor of 2.5.

  15. Stability and accuracy of a semi-implicit Godunov scheme for mass transport

    NASA Astrophysics Data System (ADS)

    Bradford, Scott F.

    2004-06-01

    Semi-implicit, Godunov-type models are adapted for solving the two-dimensional, time-dependent, mass transport equation on a geophysical scale. The method uses Van Leer's MUSCL reconstruction in conjunction with an explicit, predictor-corrector method to discretize and integrate the advection and lateral diffusion portions of the governing equation to second-order spatial and temporal accuracy. Three classical schemes are investigated for computing advection: Lax-Wendroff, Warming-Beam, and Fromm. The proposed method uses second order, centred finite differences to spatially discretize the diffusion terms. In order to improve model stability and efficiency, vertical diffusion is implicitly integrated with the Crank-Nicolson method and implicit treatment of vertical diffusion in the predictor is also examined. Semi-discrete and Von Neumann analyses are utilized to compare the stability as well as the amplitude and phase accuracy of the proposed method with other explicit and semi-implicit schemes. Some linear, two-dimensional examples are solved and predictions are compared with the analytical solutions. Computational effort is also examined to illustrate the improved efficiency of the proposed model.

  16. Mating Disruption or Mass Trapping, Compared With Chemical Insecticides, for Suppression of Chilo suppressalis (Lepidoptera: Crambidae) in Northeastern China.

    PubMed

    Chen, Ri-Zhao; Klein, Michael G; Sheng, Cheng-Fa; Li, Qi-Yun; Li, Yu; Li, Lan-Bing; Hung, Xing

    2014-10-01

    Asiatic rice borer, Chilo suppressalis (Walker), larvae cause extensive crop losses worldwide. Because chemical control is problematic, and sex pheromone applications are a valuable management tactic in China, judicious timing of a minimal density of pheromone dispensers is important in developing a cost-effective C. suppressalis IPM program. During June-October in 2011, 20, 30, 40, and 50 dispensers per hectare for mass trapping, and 200, 300, 400, and 500 dispensers per hectare for mating disruption were placed in northeastern China rice fields. Based on those results, only the two highest mass trapping densities were used in 2012-2013. The 40, 50, and 500 dispenser densities reduced egg masses to <2.0 per 100 tillers, compared with >9.5 in the insecticide-treated plots in 2011-2013. The reduced oviposition resulted in >85% reduction of larval damage, which was comparable with the currently used insecticides, dimethoate and deltamethrin (0.35 kg/ha), which gave no egg reduction, but ≍80 and 89% reduction in larval damage. The 40 and 500 densities are recommended to Chinese rice farmers for mass trapping and mating disruption programs, respectively. © 2014 Entomological Society of America.

  17. Mass-manufacturable polymer microfluidic device for dual fiber optical trapping.

    PubMed

    De Coster, Diane; Ottevaere, Heidi; Vervaeke, Michael; Van Erps, Jürgen; Callewaert, Manly; Wuytens, Pieter; Simpson, Stephen H; Hanna, Simon; De Malsche, Wim; Thienpont, Hugo

    2015-11-30

    We present a microfluidic chip in Polymethyl methacrylate (PMMA) for optical trapping of particles in an 80µm wide microchannel using two counterpropagating single-mode beams. The trapping fibers are separated from the sample fluid by 70µm thick polymer walls. We calculate the optical forces that act on particles flowing in the microchannel using wave optics in combination with non-sequential ray-tracing and further mathematical processing. Our results are compared with a theoretical model and the Mie theory. We use a novel fabrication process that consists of a premilling step and ultraprecision diamond tooling for the manufacturing of the molds and double-sided hot embossing for replication, resulting in a robust microfluidic chip for optical trapping. In a proof-of-concept demonstration, we show the trapping capabilities of the hot embossed chip by trapping spherical beads with a diameter of 6µm, 8µm and 10µm and use the power spectrum analysis of the trapped particle displacements to characterize the trap strength.

  18. A mass conserving and multi-tracer efficient transport scheme in the online integrated Enviro-HIRLAM model

    NASA Astrophysics Data System (ADS)

    Sørensen, B.; Kaas, E.; Korsholm, U. S.

    2012-11-01

    In this paper a new advection scheme for the online coupled chemical-weather prediction model Enviro-HIRLAM is presented. The new scheme is based on the locally mass conserving semi-Lagrangian method (LMCSL), where the original two-dimensional scheme has been extended to a fully three-dimensional version. This means that the three-dimensional semi-implicit semi-Lagrangian scheme which is currently used in Enviro-HIRLAM, is largely unchanged. The HIRLAM model is a computationally efficient hydrostatic operational short term numerical weather prediction model, which is used as the base for the online integrated Enviro-HIRLAM. The new scheme is shown to be efficient, mass conserving, and shape-preserving while only requiring minor alterations to the original code. It still retains the stability at long time steps, which the semi-Lagrangian schemes are known for, while handling the emissions of chemical species accurately. Several mass conserving filters have been tested to assess the optimal balance of accuracy vs. efficiency.

  19. A mass-conserving and multi-tracer efficient transport scheme in the online integrated Enviro-HIRLAM model

    NASA Astrophysics Data System (ADS)

    Sørensen, B.; Kaas, E.; Korsholm, U. S.

    2013-07-01

    In this paper a new advection scheme for the online coupled chemical-weather prediction model Enviro-HIRLAM is presented. The new scheme is based on the locally mass-conserving semi-Lagrangian method (LMCSL), where the original two-dimensional scheme has been extended to a fully three-dimensional version. This means that the three-dimensional semi-implicit semi-Lagrangian scheme which is currently used in Enviro-HIRLAM is largely unchanged. The HIRLAM model is a computationally efficient hydrostatic operational short-term numerical weather prediction model, which is used as the base for the online integrated Enviro-HIRLAM. The new scheme is shown to be efficient, mass conserving, and shape preserving, while only requiring minor alterations to the original code. It still retains the stability at long time steps, which the semi-Lagrangian schemes are known for, while handling the emissions of chemical species accurately. Several mass-conserving filters have been tested to assess the optimal balance of accuracy vs. efficiency.

  20. New cascarosides from Rhamnus purshiana and fragmentation studies of the class by ion trap mass spectrometry.

    PubMed

    Demarque, Daniel P; Pinho, Danielle R; Callejon, Daniel R; de Oliveira, Gibson G; Silva, Denise B; Carollo, Carlos A; Lopes, Norberto P

    2017-07-30

    Anthrone and oxanthrone are important anthraquinone derivatives present in medicinal plants which are used in therapeutics as laxatives. Some of these plants need to be stored at least one year before they can be used in order to oxidize anthrones into oxanthrones, so to avoid severe diarrhea and dehydration. Therefore, this work aimed to characterize fragmentation reactions between these anthraquinones to provide an easy way to differentiate between the two classes, since it is necessary and important to discriminate and identify these derivatives in laxative plants and phytotherapic drugs. Anthrone (cascarosides A-D) and oxanthrone (10-hydroxycascaroside A and B) derivatives were isolated and identified by NMR ((1) H, (13) C, DEPT, NOESY) and used for fragmentation study by direct infusion on an electrospray ionization (ESI) ion trap mass spectrometer (AmazonSL, Bruker) in positive and negative mode. The additional hydroxyl at C-10 in oxanthrones allowed McLafferty-type rearrangements to form the quinone group in positive mode, while in negative mode the second sugar loss infringed the odd-electron rule and formed a radical fragment. No differences in fragmentation reactions were found between diastereoisomeric pairs, although the additional oxygen at C-10 of oxanthrones allowed a different fragmentation pattern. The proposed fragmentation patterns can be used to differentiate anthrones from oxanthrones in both ion modes. In addition, they can be applied to differentiate these compounds in anthraquinone-rich plants and phytotherapic drugs. Finally, herein, the strategy applied allowed us to identify new natural products. Copyright © 2017 John Wiley & Sons, Ltd. Copyright © 2017 John Wiley & Sons, Ltd.

  1. Screening of new huprines--inhibitors of acetylcholinesterases by electrospray ionization ion trap mass spectrometry.

    PubMed

    Ziemianin, Anna; Ronco, Cyril; Dolé, Romain; Jean, Ludovic; Renard, Pierre-Yves; Lange, Catherine M

    2012-11-01

    Acetylcholinesterase inhibitors (AChEI) are one of the drugs families validated for clinical use in the treatment of Alzheimer's disease (AD). For this reason, finding new more potent and more selective AChEIs is always of interest. Since 1961, the inhibitory activity of AChEI is evaluated through the Ellman's method. Herein, we reported a MS-based evaluation of potential new AChEI with the determination of their inhibitory activity (IC(50) and K(I)). Compared to the Ellman's method, that uses the substrate analog acetylthiocholine, the electrospray ionization ion trap mass spectrometry (ESI-IT-MS) consists in monitoring the conversion ratio of a low concentration of the natural substrate - acetylcholine to choline. We present here the inhibition activity of huprine X and six of its derivates (bearing different functional groups at position 9) towards the recombinant human (rhAChE) and Electrophorus electricus acetylcholinesterase (EelAChE). Mechanisms of action of selected inhibitors were evaluated by means of Lineweaver-Burk plot analysis. The Michaelis-Menten constants (K(M)), inhibitory constants (K(I)) were examined as well as the IC(50) to allow classifying a series of huprine derivatives by inhibition potency by a comparison with a reference (huprine X). Our results demonstrate that these drugs are very potent AChE inhibitors, especially (±)-huprine 6 with an inhibitory activity on recombinant human AChE (rhAChE) in the picomolar range. This study reveals the interest of huprine compounds in the treatment of AD. Copyright © 2012. Published by Elsevier B.V.

  2. Characterization of VX on concrete using ion trap secondary ionization mass spectrometry.

    PubMed

    Groenewold, G S; Appelhans, A D; Gresham, G L; Olson, J E; Jeffery, M; Weibel, M

    2000-01-01

    The nerve agent VX (O-ethyl S-2-diisopropylaminoethyl methyl phosphonothiolate) was analyzed on the surface of concrete samples using an ion trap secondary ion mass spectrometer (IT-SIMS). It was found that VX could be detected down to an absolute quantity of 5 ng on a concrete chip, or to a surface coverage of 0.0004 monolayers on crushed concrete. To achieve these levels of detection, the m/z 268-->128 ion fragmentation was measured using MS2, where m/z 268 corresponds to [VX + H]+, and 128 corresponds to a diisopropylvinylammonium isomer, that is formed by the elimination of the phosphonothiolate moiety. Detection at these levels was accomplished by analyzing samples that had been recently exposed to VX, i.e., within an hour. When the VX-exposed concrete samples were aged, the SIMS signature for intact VX had disappeared, which signaled the degradation of the compound on the concrete surface. The VX signature was replaced by ions which are interpreted in terms of VX degradation products, which appear to be somewhat long lived on the concrete surface. These compounds include ethylmethylphosphonic acid (EMPA), diisopropyl taurine (DIPT), diisopropylaminoethanethiol (DESH), bis(diisopropylaminoethane) disulfide [(DES)2], and a particularly tenacious compound that may correspond to diisopropylvinylamine (DIVA), or an isomer thereof. It was found that the thiolamine-derived degradation products DIPT, DESH, and (DES)2 were removed with isopropyl alcohol extraction. However, the DIVA-related degradation product was observed to strongly adhere to the concrete surface for longer than one week. Although quantitation was not possible in this set of experiments, the results clearly show the rapid degradation of VX on concrete, as well as the surface sensitivity of the IT-SIMS for intact VX and its adsorptive degradation products.

  3. Linear ion-trap mass spectrometric characterization of human pituitary nitrotyrosine-containing proteins

    NASA Astrophysics Data System (ADS)

    Zhan, Xianquan; Desiderio, Dominic M.

    2007-01-01

    The nitric oxide-mediated Tyr-nitration of endogenous proteins is associated with several pathological and physiological processes. In order to investigate the presence - and potential roles - of Tyr-nitration in the human pituitary, a large-format two-dimensional gel separation plus a Western blot against a specific anti-3-nitrotyrosine antibody were used to separate and detect nitroproteins from a human pituitary proteome. The nitroproteins were subjected to in-gel trypsin digestion, and high-sensitivity vacuum matrix-assisted laser desorption/ionization (vMALDI) linear ion-trap tandem mass spectrometry was used to analyze the tryptic peptides. Those MS/MS data were used to determine the amino acid sequence and the specific nitration site of each tryptic nitropeptide, and were matched to corresponding proteins with Bioworks TuboSEQUEST software. Compared to our previous study, 16 new nitrotyrosine-immunoreactive positive Western blot spots were found within the area pI 3.0-10 and Mr 10-100 kDa. Four new nitroproteins were discovered: the stanniocalcin 1 precursor--involved in calcium and phosphate metabolism; mitochondrial co-chaperone protein HscB, which might act as a co-chaperone in iron-sulfur cluster assembly in mitochrondria; progestin and adipoQ receptor family member III--a seven-transmembrane receptor; proteasome subunit alpha type 2--involved in an ATP/ubiquitin-dependent non-lysosomal proteolytic pathway. Those data demonstrate that nitric oxide-mediated Tyr-nitration might participate in various biochemical, metabolic, and pathological processes in the human pituitary.

  4. Mass Spectrometry Parameters Optimization for the 46 Multiclass Pesticides Determination in Strawberries with Gas Chromatography Ion-Trap Tandem Mass Spectrometry

    NASA Astrophysics Data System (ADS)

    Fernandes, Virgínia C.; Vera, Jose L.; Domingues, Valentina F.; Silva, Luís M. S.; Mateus, Nuno; Delerue-Matos, Cristina

    2012-12-01

    Multiclass analysis method was optimized in order to analyze pesticides traces by gas chromatography with ion-trap and tandem mass spectrometry (GC-MS/MS). The influence of some analytical parameters on pesticide signal response was explored. Five ion trap mass spectrometry (IT-MS) operating parameters, including isolation time (IT), excitation voltage (EV), excitation time (ET), maximum excitation energy or " q" value (q), and isolation mass window (IMW) were numerically tested in order to maximize the instrument analytical signal response. For this, multiple linear regression was used in data analysis to evaluate the influence of the five parameters on the analytical response in the ion trap mass spectrometer and to predict its response. The assessment of the five parameters based on the regression equations substantially increased the sensitivity of IT-MS/MS in the MS/MS mode. The results obtained show that for most of the pesticides, these parameters have a strong influence on both signal response and detection limit. Using the optimized method, a multiclass pesticide analysis was performed for 46 pesticides in a strawberry matrix. Levels higher than the limit established for strawberries by the European Union were found in some samples.

  5. Infrared atmospheric pressure MALDI ion trap mass spectrometry of frozen samples using a Peltier-cooled sample stage.

    PubMed

    Von Seggern, Christopher E; Gardner, Ben D; Cotter, Robert J

    2004-10-01

    Infrared atmospheric pressure matrix-assisted laser desorption/ionization on an ion trap mass spectrometer is used to analyze frozen samples generated using a Peltier-cooled sample stage. This allows for the analysis of samples in water without the addition of matrix, in near-native conditions, and with minimal loss of water due to evaporation. Analysis of frozen samples is extended to study peptides, carbohydrates, and glycolipids.

  6. Characterization of the chemical composition of white chrysanthemum flowers of Hangzhou by using high-performance ion trap mass spectrometry.

    PubMed

    Zhou, Xiahui; Chen, Xiaocheng; Wu, Xin; Cao, Gang; Zhang, Junjie

    2016-04-01

    In this study, high-performance liquid chromatography coupled with amaZon SL high-performance ion trap mass spectrometry was used to analyze the target components in white chrysanthemum flowers of Hangzhou. Twenty-one components were detected and identified in both white chrysanthemum flowers of Hangzhou samples by using target compound analysis. Furthermore, seven new compounds in white chrysanthemum flowers of Hangzhou were found and identified by analyzing the fragment ion behavior in the mass spectra. The established method can be expedient for the global quality investigation of complex components in herbal medicines and food. © 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  7. Determination of metaldehyde in suspected cases of animal poisoning using gas chromatography-ion trap mass spectrometry.

    PubMed

    Jones, A; Charlton, A

    1999-11-01

    A method was developed to detect the molluscicide metaldehyde in samples of stomach contents for forensic toxicology investigations. Gas chromatography-ion trap mass spectrometry in full-scan mode was used to identify and quantify metaldehyde. The limit of detection based on mass chromatograms for the m/z 89 ion was 3 microg/g. Mean recoveries from six different spiked samples were 74% at 25 microg/g and 94% at 500 microg/g. The relative standard deviation of six replicate determinations of a sample containing 632 microg/g metaldehyde was 7.3%.

  8. Multi-scale and angular analysis of ray-optical light trapping schemes in thin-film solar cells: micro lens array, V-shaped configuration, and double parabolic trapper.

    PubMed

    Cho, Changsoon; Lee, Jung-Yong

    2013-03-11

    An efficient light trapping scheme is a key to enhancing the power conversion efficiency (PCE) of thin-film photovoltaic (PV) cells by compensating for the insufficient light absorption. To handle optical components from nano-scale to micro-scale seamlessly, a multi-scale optical simulation is carefully designed in this study and is used to qualitatively analyze the light trapping performances of a micro lens array (MLA), a V-shaped configuration, and the newly proposed scheme, which is termed a double parabolic trapper (DPT) according to both daily and annual movement of the sun. DPT has the potential to enhance the PCE significantly, from 5.9% to 8.9%, for PCDTBT:PC(70)BM-based polymer solar cells by perfectly trapping the incident light between two parabolic PV cells.

  9. Mars Organic Molecule Analyzer (MOMA) Mass Spectrometer Flight Model and Future Ion Trap-Based Planetary Instruments

    NASA Astrophysics Data System (ADS)

    Brinckerhoff, W. B.; van Amerom, F. H. W.; Danell, R.; Pinnick, V. T.; Arevalo, R. D., Jr.; Li, X.; Grubisic, A.; Getty, S.; Hovmand, L.; Mahaffy, P. R.

    2015-12-01

    The Mars Organic Molecule Analyzer (MOMA) investigation on the 2018 ExoMars rover will examine the chemical composition of samples acquired from depths of up to two meters below the martian surface, where organics may be protected from radiative and oxidative degradation. MOMA combines pyrolysis gas chromatography mass spectrometry (GCMS) of bulk powder samples and Mars ambient laser desorption mass spectrometry (LDMS) surface analysis, using a single ion trap MS. This dual source design enables MOMA to detect compounds over a wide range of molecular weights and volatilities. The structure of any detected organics may be further examined using MOMA's tandem mass spectrometry (MS/MS) mode. The flight model (FM) ion trap sensor and electronics have been assembled under the extremely clean and sterile conditions required by ExoMars, and have met or exceeded all performance specifications during initial functional tests. After Mars ambient thermal cycling and calibration, the FM will be delivered as a subsystem of MOMA to rover integration in mid-2016. There MOMA will join complementary rover instruments such as the Raman and MicrOmega spectrometers designed to analyze common drill samples. Following the MOMA design, linear ion trap mass spectrometer (LITMS)-based instruments are under development for future missions. LITMS adds enhanced capabilities such as precision (point-by-point) analysis of drill cores, negative ion detection, a wider mass range, and higher temperature pyrolysis with precision evolved gas analysis, while remaining highly compact and robust. Each of the capabilities of LITMS has been demonstrated on breadboard hardware. The next phase will realize an end-to-end brassboard at flight scale that will meet stringent technology readiness level (TRL) 6 criteria, indicating readiness for development toward missions to Mars, comets, asteroids, outer solar system moons, and beyond.

  10. Quantitative determination of phencyclidine in pigmented and nonpigmented hair by ion-trap mass spectrometry.

    PubMed

    Slawson, M H; Wilkins, D G; Foltz, R L; Rollins, D E

    1996-10-01

    A sensitive and specific method has been developed for the quantitative analysis of phencyclidine (PCP) in pigmented and nonpigmented rat hair. After the addition of PCP-d5 as the internal standard, hair samples (10 mg) were digested overnight in 1N NaOH at 30 degrees C. Digested solutions were then extracted using a solid-phase procedure with Bond Elut CertifyTM extraction columns. Reconstituted extracts were analyzed on a Finnigan ion trap (MagnumTM) mass spectrometer in the electron ionization mode using helium as the carrier gas, and a DB-5 MS (30 m x 0.25-mm i.d.; 25-microns film thickness) capillary column. The assay is linear from 0.1 to 50 ng/mg with a correlation coefficient of > 0.99 and is capable of detecting 25 pg of PCP on column. The accuracy of this assay was estimated using fortified hair standards at PCP concentrations of 0.5 and 10 ng/mg. Intra-assay coefficients of variation were determined to be less than 6% at 0.5, 2, and 10 ng/mg. Interassay coefficients of variation were determined to be less than 15% at 0.5, 2, and 10 ng/mg. The method has been used to evaluate PCP incorporation into Long-Evans rat hair but could also be used to evaluate the incorporation of PCP into human hair. Male rats were shaved prior to dosing such that both pigmented and nonpigmented hair was collected. Animals were administered 12 mg/kg PCP by intraperitoneal injection daily for five days. Fourteen days after the first dose, pigmented and nonpigmented hair were collected and analyzed for PCP. The mean plus or minus the standard error of the mean (n = 5) concentrations of PCP in pigmented and nonpigmented hair were 14.33 +/- 1.43 ng/mg of hair and 0.47 +/- 0.04 ng/mg of hair, respectively. This method is also being used to evaluate PCP as a model xenobiotic for studies of the incorporation of xenobiotics into hair.

  11. Mass conservative BDF-discontinuous Galerkin/explicit finite volume schemes for coupling subsurface and overland flows

    NASA Astrophysics Data System (ADS)

    Sochala, P.; Ern, A.; Piperno, S.

    2009-05-01

    Robust and accurate schemes are designed to simulate the coupling between subsurface and overland flows. The coupling conditions at the interface enforce the continuity of both the normal flux and the pressure. Richards' equation governing the subsurface flow is discretized using a Backward Differentiation Formula and a symmetric interior penalty Discontinuous Galerkin method. The kinematic wave equation governing the overland flow is discretized using a Godunov scheme. Both schemes individually are mass conservative and can be used within single-step or multi-step coupling algorithms that ensure overall mass conservation owing to a specific design of the interface fluxes in the multi-step case. Numerical results are presented to illustrate the performances of the proposed algorithms.

  12. Determination of vanillin, ethyl vanillin, and coumarin in infant formula by liquid chromatography-quadrupole linear ion trap mass spectrometry.

    PubMed

    Shen, Yan; Han, Chao; Liu, Bin; Lin, Zhengfeng; Zhou, Xiujin; Wang, Chengjun; Zhu, Zhenou

    2014-02-01

    A simple, precise, accurate, and validated liquid chromatography-quadrupole linear ion trap mass spectrometry method was developed for the determination of vanillin, ethyl vanillin, and coumarin in infant formula samples. Following ultrasonic extraction with methanol/water (1:1, vol/vol), and clean-up on an HLB solid-phase extraction cartridge (Waters Corp., Milford, MA), samples were separated on a Waters XSelect HSS T3 column (150 × 2.1-mm i.d., 5-μm film thickness; Waters Corp.), with 0.1% formic acid solution-acetonitrile as mobile phase at a flow rate of 0.25 mL/min. Quantification of the target was performed by the internal standard approach, using isotopically labeled compounds for each chemical group, to correct matrix effects. Data acquisition was carried out in multiple reaction monitoring transitions mode, monitoring 2 multiple reaction monitoring transitions to ensure an accurate identification of target compounds in the samples. Additional identification and confirmation of target compounds were performed using the enhanced product ion modus of the linear ion trap. The novel liquid chromatography-quadrupole linear ion trap mass spectrometry platform offers the best sensitivity and specificity for characterization and quantitative determination of vanillin, ethyl vanillin, and coumarin in infant formula and fulfills the quality criteria for routine laboratory application.

  13. U-Pb geochronology of the Deccan Traps and relation to the end-Cretaceous mass extinction

    NASA Astrophysics Data System (ADS)

    Schoene, Blair; Samperton, Kyle M.; Eddy, Michael P.; Keller, Gerta; Adatte, Thierry; Bowring, Samuel A.; Khadri, Syed F. R.; Gertsch, Brian

    2015-04-01

    Despite the growing number of mass extinction events correlated with large igneous provinces, the mechanisms by which volcanic eruptions can lead to ecosystem collapse and biologic turnover remain poorly understood. A better understanding of these events requires high-resolution timelines for volcanic outpourings, geochemical and isotopic proxy records, and biostratigraphic data that cover the extinction and recovery intervals. It has long been known that the Cretaceous-Paleogene mass extinction event broadly correlates with the eruption of the Deccan Traps, but high-precision geochronology from these basalts has remained elusive, despite the role the traps could have played in ecosystem decline and recovery and the importance of assessing their timing relative to the Chicxulub impact event. We have applied high-precision U-Pb CA-ID-TIMS geochronology to rocks from within the Deccan Traps that constrain the onset and termination of the main phase of volcanism. Because of the rarity of zircon in basalt, dated material includes both in situ zircon-bearing segregation veins within basalt flows and also volcanic ash beds found between individual basalt flows. The latter likely derive from distant, higher-Si explosive volcanic vents during periods of basaltic quiescence. We show that the duration of the main phase of the Deccan, which included >1.1 million cubic km of basalt, erupted in ~750 kyr and began ~250 kyr prior to recently published dates [1] for the Cretaceous-Paleogene mass extinction event. When combined with published paleomagnetic data from the Deccan traps [2,3], our data place the main phase of Deccan eruptions precisely within the geomagnetic polarity timescale and thus permit correlation of their onset with other stratigraphic records that lack geochronology. Our ages improve on the precision of existing geochronology for the Deccan Traps by 1-2 orders of magnitude and are a crucial starting point for more quantitative estimates of volcanic gas

  14. Towards a mass and volume conserving interface reinitialization scheme for a diffuse interface methodology (for shock-particle interaction)

    NASA Astrophysics Data System (ADS)

    Zhang, Ju; Jackson, Thomas L.; Sridharan, Prashanth; Balachandar, S.

    2017-01-01

    Recent work using a diffuse interface numerical method for multiphase problems is found to have relatively poor conservation properties of the particles. A novel constrained interface reinitialization scheme is proposed and demonstrated to be effective in conserving particle mass and particle volume when appropriate.

  15. CID of singly charged antioxidants applied in lubricants by means of a 3D ion trap and a linear ion trap-Orbitrap mass spectrometer.

    PubMed

    Kassler, Alexander; Pittenauer, Ernst; Doerr, Nicole; Allmaier, Guenter

    2011-06-01

    The aim of this study was to investigate the fragmentation behavior induced by low-energy collision-induced dissociation (LE-CID) of four selected antioxidants applied in lubricants, by two different types of ion trap mass spectrometers: a three-dimensional ion trap (3D-IT) and a linear IT (LIT) Orbitrap MS. Two sterically hindered phenols and two aromatic amines were selected as model compounds representing different antioxidant classes and were characterized by positive-ion electrospray ionization (ESI) and LE-CID. Various types of molecular ions (e.g. [M](+•) , [M + H](+) , [M + NH(4) ](+) or [M + Na](+) ) were used as precursor ions generating a significant number of structurally relevant product ions. Furthermore, the phenolic compounds were analyzed by negative-ion ESI. For both IT types applied for fragmentation, the antioxidants exhibited the same unusual LE-CID behavior: (1) they formed stable radical product ions and (2) CC bond cleavages of aliphatic substituents were observed and their respective cleavage sites depended on the precursor ion selected. This fragmentation provided information on the type of structural isomer usually not obtainable for branched aliphatic substituents utilizing LE-CID. Comparing the two instruments, the main benefit of applying the LIT-Orbitrap was direct access to elemental composition of product ions enabling unambiguous interpretation of fragmentation trees not obtainable by the 3D-IT device (e.g. loss of isobaric neutrals). It should be emphasized that the types of product ions formed do not depend on the type of IT analyzer applied. For characterizing degradation products of antioxidants, the LIT-Orbitrap hybrid system, allowing the determination of accurate m/z values for product ions, is the method of choice.

  16. Identification of isomers and control of ionization and dissociation processes using dual-mass-spectrometer scheme and genetic algorithm optimization

    NASA Astrophysics Data System (ADS)

    Chen, Zhou; Tong, Qiu-Nan; Zhang, Cong-Cong; Hu, Zhan

    2015-04-01

    Identification of acetone and its two isomers, and the control of their ionization and dissociation processes are performed using a dual-mass-spectrometer scheme. The scheme employs two sets of time of flight mass spectrometers to simultaneously acquire the mass spectra of two different molecules under the irradiation of identically shaped femtosecond laser pulses. The optimal laser pulses are found using closed-loop learning method based on a genetic algorithm. Compared with the mass spectra of the two isomers that are obtained with the transform limited pulse, those obtained under the irradiation of the optimal laser pulse show large differences and the various reaction pathways of the two molecules are selectively controlled. The experimental results demonstrate that the scheme is quite effective and useful in studies of two molecules having common mass peaks, which makes a traditional single mass spectrometer unfeasible. Project supported by the National Basic Research Program of China (Grant No. 2013CB922200) and the National Natural Science Foundation of China (Grant No. 11374124).

  17. Detection of Chemical/Biological Agents and Stimulants using Quadrupole Ion Trap Mass Spectrometry

    SciTech Connect

    Harmon, S.H.; Hart, K.J.; Vass, A.A.; Wise, M.B.; Wolf, D.A.

    1999-06-14

    Detection of Chemical/Biological Agents and Simulants A new detector for chemical and biological agents is being developed for the U. S. Army under the Chemical and Biological Mass Spectrometer Block II program. The CBMS Block II is designed to optimize detection of both chemical and biological agents through the use of direct sampling inlets [I], a multi- ported sampling valve and a turbo- based vacuum system to support chemical ionization. Unit mass resolution using air as the buffer gas [2] has been obtained using this design. Software to control the instrument and to analyze the data generated from the instrument has also been newly developed. Detection of chemical agents can be accomplished. using the CBMS Block II design via one of two inlets - a l/ I 6'' stainless steel sample line -Chemical Warfare Air (CW Air) or a ground probe with enclosed capillary currently in use by the US Army - CW Ground. The Block II design is capable of both electron ionization and chemical ionization. Ethanol is being used as the Cl reagent based on a study indicating best performance for the Biological Warfare (BW) detection task (31). Data showing good signal to noise for 500 pg of methyl salicylate injected into the CW Air inlet, 50 ng of dimethylmethylphosphonate exposed to the CW Ground probe and 5 ng of methyl stearate analyzed using the pyrolyzer inlet were presented. Biological agents are sampled using a ''bio-concentrator'' unit that is designed to concentrate particles in the low micron range. Particles are collected in the bottom of a quartz pyrolyzer tube. An automated injector is being developed to deliver approximately 2 pL of a methylating reagent, tetramethylamonium- hydroxide to 'the collected particles. Pyrolysis occurs by rapid heating to ca. 55OOC. Biological agents are then characterized by their fatty acid methyl ester profiles and by other biomarkers. A library of ETOH- Cl/ pyrolysis MS data of microorganisms used for a recently published study [3] has been

  18. Identification of free radicals in oxidized and glycoxidized phosphatidylethanolamines by spin trapping combined with tandem mass spectrometry.

    PubMed

    Simões, Cláudia; Domingues, Pedro; Domingues, Maria Rosario M

    2012-04-30

    Nonenzymatic glycation of phosphatidylethanolamines (PEs) seems to a have a role in angiogenesis and atherosclerosis. Glycated PEs are more easily oxidized, enhancing oxidative stress. This study aims to evaluate the influence of glycation on the formation of intermediate radical species during oxidation of glycated PEs. In the present study, the radical intermediaries formed during the oxidation of palmitoyl-lineoyl phosphatidylethanolamine (PLPE) and glycated PLPE (gPLPE) were trapped using a spin trap (DMPO) and the radical adducts were analyzed by electrospray ionization mass spectrometry (ESI-MS) and tandem mass spectrometry (ESI-MS/MS). Mass spectra were acquired using a electrospray Q-TOF 2 mass spectrometer. Several spin adducts of PLPE and gPLPE were identified, corresponding to carbon- and oxygen-centered radicals. Interpretation of the MS/MS spectra showed the existence of different sites where radical formation occurred, at the sn-2 acyl chain, ethanolamine moiety (particularly in C-1) and, in the case of glycated derivatives, also in the glucose moiety (particularly in C-3, C-4 and C-5). These results suggested the presence of more sites susceptible to oxidation in glycated PLPE, which may be responsible for the increase in the oxidative reaction rate occurring in glycated compounds. Copyright © 2012 John Wiley & Sons, Ltd.

  19. Improving Hydrological Models by Applying Air Mass Boundary Identification in a Precipitation Phase Determination Scheme

    NASA Astrophysics Data System (ADS)

    Feiccabrino, James; Lundberg, Angela; Sandström, Nils

    2013-04-01

    Many hydrological models determine precipitation phase using surface weather station data. However, there are a declining number of augmented weather stations reporting manually observed precipitation phases, and a large number of automated observing systems (AOS) which do not report precipitation phase. Automated precipitation phase determination suffers from low accuracy in the precipitation phase transition zone (PPTZ), i.e. temperature range -1° C to 5° C where rain, snow and mixed precipitation is possible. Therefore, it is valuable to revisit surface based precipitation phase determination schemes (PPDS) while manual verification is still widely available. Hydrological and meteorological approaches to PPDS are vastly different. Most hydrological models apply surface meteorological data into one of two main PPDS approaches. The first is a single rain/snow threshold temperature (TRS), the second uses a formula to describe how mixed precipitation phase changes between the threshold temperatures TS (below this temperature all precipitation is considered snow) and TR (above this temperature all precipitation is considered rain). However, both approaches ignore the effect of lower tropospheric conditions on surface precipitation phase. An alternative could be to apply a meteorological approach in a hydrological model. Many meteorological approaches rely on weather balloon data to determine initial precipitation phase, and latent heat transfer for the melting or freezing of precipitation falling through the lower troposphere. These approaches can improve hydrological PPDS, but would require additional input data. Therefore, it would be beneficial to link expected lower tropospheric conditions to AOS data already used by the model. In a single air mass, rising air can be assumed to cool at a steady rate due to a decrease in atmospheric pressure. When two air masses meet, warm air is forced to ascend the more dense cold air. This causes a thin sharp warming (frontal

  20. High-Capacity Ion Trap Coupled to a Time-of-Flight Mass Spectrometer for Comprehensive Linked Scans with no Scanning Losses

    PubMed Central

    Myung, Sunnie; Cohen, Herbert; Fenyo, David; Padovan, Julio C.; Krutchinsky, Andrew N.

    2010-01-01

    A high-capacity ion trap coupled to a time-of-flight (TOF) mass spectrometer has been developed to carry out comprehensive linked scan analysis of all stored ions in the ion trap. The approach involves a novel tapered geometry high-capacity ion trap that can store more than 106 ions (range 800-4000 m/z) without degrading its performance. Ions are stored and scanned out from the high-capacity ion trap as a function of m/z, collisionally fragmented and analyzed by TOF. Accurate mass analysis is achieved on both the precursor and fragment ions of all species ejected from the ion trap. We demonstrate the approach for comprehensive linked-scan identification of phosphopeptides in mixtures with their corresponding unphosphorylated peptides. PMID:21516228

  1. Selective linkage detection of O-sialoglycan isomers by negative electrospray ionization ion trap tandem mass spectrometry.

    PubMed

    Casal, Enriqueta; Lebrón-Aguilar, Rosa; Moreno, Francisco Javier; Corzo, Nieves; Quintanilla-López, Jesús Eduardo

    2010-04-15

    Sialylated O-linked oligosaccharides are involved in many biological processes, such as cell-cell interactions, cell-substance adhesion, and virus-host interactions. These activities depend on their structure, which is frequently determined by tandem mass spectrometry. However, these spectra are frequently analyzer-dependent, which makes it difficult to develop widely applicable analytical methods. In order to deepen the origin of this behavior, two couples of isomers of sialylated O-linked oligosaccharides, NeuAc alpha2-3Gal beta1-3GalNAc-ol/Gal beta1-3(NeuAc alpha2-6)GalNAc-ol and NeuGc alpha2-3Gal beta1-3GalNAc-ol/Gal beta1-3(NeuGc alpha2-6)GalNAc-ol, were analyzed by liquid chromatography/negative electrospray ionization ion trap tandem mass spectrometry (LC/ESI(-)-MS(n)) using both an ion trap and a triple quadrupole mass spectrometer. Results clearly showed that while ions obtained in the triple quadrupole instrument fitted very well with the standard fragmentation routes, in the ion trap several intense ions could not be explained by these rules, specially a fragment at m/z 597. Furthermore, this ion was observed in the mass spectrum of those isomers that sialic acid binds to GalNAc by an alpha2-6 linkage. From the MS(3) spectrum of this ion an unexpected structure was deduced, and it led to propose alternative fragmentation pathways. Molecular mechanics calculations suggested that the found atypical route could be promoted by a hydrogen bond located only in alpha2-6-linked oligosaccharides. It has also been demonstrated that this process follows a slow kinetic, explaining why it cannot be observed using an ion beam-type mass analyzer. In conclusion, ion traps seem to be more appropriate than triple quadrupoles to develop a reliable analytical method to distinguish between isomeric O-linked glycans.

  2. U-Pb geochronology of the Deccan Traps and relation to the end-Cretaceous mass extinction

    NASA Astrophysics Data System (ADS)

    Schoene, Blair; Samperton, Kyle M.; Eddy, Michael P.; Keller, Gerta; Adatte, Thierry; Bowring, Samuel A.; Khadri, Syed F. R.; Gertsch, Brian

    2015-01-01

    The Chicxulub asteroid impact (Mexico) and the eruption of the massive Deccan volcanic province (India) are two proposed causes of the end-Cretaceous mass extinction, which includes the demise of nonavian dinosaurs. Despite widespread acceptance of the impact hypothesis, the lack of a high-resolution eruption timeline for the Deccan basalts has prevented full assessment of their relationship to the mass extinction. Here we apply uranium-lead (U-Pb) zircon geochronology to Deccan rocks and show that the main phase of eruptions initiated ~250,000 years before the Cretaceous-Paleogene boundary and that >1.1 million cubic kilometers of basalt erupted in ~750,000 years. Our results are consistent with the hypothesis that the Deccan Traps contributed to the latest Cretaceous environmental change and biologic turnover that culminated in the marine and terrestrial mass extinctions.

  3. Earth history. U-Pb geochronology of the Deccan Traps and relation to the end-Cretaceous mass extinction.

    PubMed

    Schoene, Blair; Samperton, Kyle M; Eddy, Michael P; Keller, Gerta; Adatte, Thierry; Bowring, Samuel A; Khadri, Syed F R; Gertsch, Brian

    2015-01-09

    The Chicxulub asteroid impact (Mexico) and the eruption of the massive Deccan volcanic province (India) are two proposed causes of the end-Cretaceous mass extinction, which includes the demise of nonavian dinosaurs. Despite widespread acceptance of the impact hypothesis, the lack of a high-resolution eruption timeline for the Deccan basalts has prevented full assessment of their relationship to the mass extinction. Here we apply uranium-lead (U-Pb) zircon geochronology to Deccan rocks and show that the main phase of eruptions initiated ~250,000 years before the Cretaceous-Paleogene boundary and that >1.1 million cubic kilometers of basalt erupted in ~750,000 years. Our results are consistent with the hypothesis that the Deccan Traps contributed to the latest Cretaceous environmental change and biologic turnover that culminated in the marine and terrestrial mass extinctions. Copyright © 2015, American Association for the Advancement of Science.

  4. Precise MS light-quark masses from lattice QCD in the regularization invariant symmetric momentum-subtraction scheme

    SciTech Connect

    Gorbahn, Martin; Jaeger, Sebastian

    2010-12-01

    We compute the conversion factors needed to obtain the MS and renormalization-group-invariant (RGI) up, down, and strange quark masses at next-to-next-to-leading order from the corresponding parameters renormalized in the recently proposed RI/SMOM and RI/SMOM{sub {gamma}{sub {mu}} }renormalization schemes. This is important for obtaining the MS masses with the best possible precision from numerical lattice QCD simulations, because the customary RI{sup (')}/MOM scheme is afflicted with large irreducible uncertainties both on the lattice and in perturbation theory. We find that the smallness of the known one-loop matching coefficients is accompanied by even smaller two-loop contributions. From a study of residual scale dependences, we estimate the resulting perturbative uncertainty on the light-quark masses to be about 2% in the RI/SMOM scheme and about 3% in the RI/SMOM{sub {gamma}{sub {mu}} }scheme. Our conversion factors are given in fully analytic form, for general covariant gauge and renormalization point. We provide expressions for the associated anomalous dimensions.

  5. Inclusive B-meson production at the LHC in the general-mass variable-flavor-number scheme

    SciTech Connect

    Kniehl, B. A.; Kramer, G.; Schienbein, I.

    2011-11-01

    We calculate the next-to-leading-order cross section for the inclusive production of B mesons in pp collisions in the general-mass variable-flavor-number scheme, an approach that takes into account the finite mass of the b quarks. We use realistic evolved nonperturbative fragmentation functions obtained from fits to e{sup +}e{sup -} data and compare our results for the transverse-momentum and rapidity distributions at a center-of-mass energy of 7 TeV with recent data from the CMS Collaboration at the CERN LHC. We find good agreement, in particular, at large values of p{sub T}.

  6. Finnigan ion trap mass spectrometer detection limits and thermal energy analyzer interface status report and present capabilities

    SciTech Connect

    Alcaraz, A.; Andresen, B.; Martin, W.

    1990-10-18

    A new Finnigan ion trap mass spectrometer was purchased and installed at LLNL. Over a period of several months the instrument was tested under a variety of conditions utilizing a capillary gas chromatography interface which allowed separated organic compounds to be carried directly into the ion source of the mass spectrometer. This direct interface allowed maximum analytical sensitivity. A variety of critical tests were performed in order to optimize the sensitivity of the system under a variety of analysis conditions. These tests altered the critical time cycles of the ionization, ion trapping, and detection. Various carrier gas pressures were also employed in order to ascertain the overall sensitivity of the instrument. In addition we have also interfaced a thermal energy analyzer (TEA) to the gas chromatograph in order to simultaneously detect volatile nitrogen containing compounds while mass spectral data is being acquired. This is the first application at this laboratory of simultaneous ultra-trace detections while utilizing two orthogonal analytical techniques. In particular, explosive-related compound and/or residues are of interest to the general community in water, soil and gas sampler. In this paper are highlighted a few examples of the analytical power of this new GC-TEA-ITMS technology.

  7. Decomposition of cyclohexane ion induced by intense femtosecond laser fields by ion-trap time-of-flight mass spectrometry

    SciTech Connect

    Yamazaki, Takao; Watanabe, Yusuke; Kanya, Reika; Yamanouchi, Kaoru

    2016-01-14

    Decomposition of cyclohexane cations induced by intense femtosecond laser fields at the wavelength of 800 nm is investigated by ion-trap time-of-flight mass spectrometry in which cyclohexane cations C{sub 6}H{sub 12}{sup +} stored in an ion trap are irradiated with intense femtosecond laser pulses and the generated fragment ions are recorded by time-of-flight mass spectrometry. The various fragment ion species, C{sub 5}H{sub n}{sup +} (n = 7, 9), C{sub 4}H{sub n}{sup +} (n = 5–8), C{sub 3}H{sub n}{sup +} (n = 3–7), C{sub 2}H{sub n}{sup +} (n = 2–6), and CH{sub 3}{sup +}, identified in the mass spectra show that decomposition of C{sub 6}H{sub 12}{sup +} proceeds efficiently by the photo-irradiation. From the laser intensity dependences of the yields of the fragment ion species, the numbers of photons required for producing the respective fragment ions are estimated.

  8. Precision Penning Trap Mass Spectrometry of ^32S, ^84,86Kr and ^129,132Xe

    NASA Astrophysics Data System (ADS)

    Redshaw, Matthew

    2005-05-01

    Using a phase coherent technique to measure the cyclotron frequency of single ions in a Penning trap [1], we have performed mass measurements on ^32S and the two most abundant krypton and xenon isotopes ^84Kr, ^86Kr, ^ 129Xe and ^132Xe, to relative precisions of 0.1 ppb. This is a factor of ˜10-100 improvement in precision over current values [2]. [1] M.P. Bradley, J.V. Porto, S. Rainville, J.K. Thompson, and D.E. Pritchard, PRL 83, 4510 (1999). [2] G. Audi, A.H. Wapstra, and C. Thibault, Nucl Phys A729, 337 (2003).

  9. Analysis of high mass-to-charge ions in a quadrupole ion trap mass spectrometer via an end-cap quadrupolar direct current downscan.

    PubMed

    Prentice, Boone M; McLuckey, Scott A

    2012-09-04

    A method for performing mass-selective instability analysis in a three-dimensional (3-D) quadrupole ion trap is described that involves scanning a direct current (dc) voltage applied to the end-cap electrodes while holding the radio frequency (rf) potential at a fixed value. Rather than eject at the ß(z) = 1 instability line by ramping the amplitude of the drive rf potential applied to the ring electrode, as with the original mass-selective instability scan, this approach effects ion ejection along the ß(z) = 0 instability line in a process identical in principle (though it varies in its method of implementation) to the previously termed "downscan" ( Todd , J. F. J. ; Penman , A. D. ; Smith , R. D. Int. J. Mass Spectrom. Ion Processes 1991 , 106 , 117 - 135 ). A linear scan of the dc amplitude results in a nonlinear mass scale, unlike the conventional resonance ejection scan with a linear scan of the rf amplitude, and the ejection of ions in the direction of high mass-to-charge (m/z) to low m/z. However, the downscan offers some advantages over the traditional rf scan for ions of high m/z values. These include a larger scannable mass range, as well as the opportunity for improved resolution at high mass. These characteristics are demonstrated with ions of m/z 10(4)-10(5).

  10. Protein identification via ion-trap collision-induced dissociation and examination of low-mass product ions.

    PubMed

    Bowers, Jeremiah J; Liu, Jian; Gunawardena, Harsha P; McLuckey, Scott A

    2008-01-01

    A whole-protein tandem mass spectrometry approach for protein identification based on precursor ion charge state concentration via ion/ion reactions, ion-trap collisional activation, ion/ion proton-transfer reactions involving the product ions, and mass analysis over a narrow m/z range (up to m/z 2000) is described and evaluated. The experiments were carried out with a commercially available electrospray ion-trap instrument that has been modified to allow for ion/ion reactions. Reaction conditions and the approach to searching protein databases were developed with the assumption that the resolving power of the mass analyzer is insufficient to distinguish charge states on the basis of the isotope spacings. Ions derived from several charge states of cytochrome c, myoglobin, ribonuclease A, and ubiquitin were used to evaluate the approach for protein identification and to develop a two-step procedure to database searching to optimize specificity. The approach developed with the model proteins was then applied to whole cell lysate fractions of Saccharomyces cerevisiae. The results are illustrated with examples of assignments made for three a priori unknown proteins, each selected randomly from a lysate fraction. Two of the three proteins were assigned to species present in the database, whereas one did not match well any database entry. The combination of the mass measurement and the product ion masses suggested the possibility for the oxidation of two methionine residues of a protein in the database. The examples show that this limited whole-protein characterization approach can provide insights that might otherwise be lacking with approaches based on complete enzymatic digestion.

  11. A Quadrupole Ion Trap Mass Spectrometer for Quantitative Analysis of Nitrogen-Purged Compartments within the Space Shuttle

    NASA Technical Reports Server (NTRS)

    Ottens, Andrew K.; Griffin, Timothy P.; Helms, William R.; Yost, Richard A.; Steinrock, T. (Technical Monitor)

    2001-01-01

    To enter orbit, the Space Shuttle burns 1.8 million liters of liquid hydrogen combined with 0.8 million liters of liquid oxygen through three rocket engines mounted in the aft. NASA monitors the nitrogen-purged aft compartment for increased levels of hydrogen or oxygen in order to detect and determine the severity of a cryogenic fuel leak. Current monitoring is accomplished with a group of mass spectrometer systems located as much as 400 feet away from the Shuttle. It can take up to 45 seconds for gas to reach the mass spectrometer, which precludes monitoring for leaks in the final moments before liftoff (the orbiter engines are started at T-00:06 seconds). To remedy the situation, NASA is developing a small rugged mass spectrometer to be used as point-sensors around the Space Shuttle. As part of this project, numerous mass analyzer technologies are being investigated. Presented here are the preliminary results for one such technology, quadrupole ion trap mass spectrometry (QITMS). A compact QITMS system has been developed in-house at the University of Florida for monitoring trace levels of four primary gases, hydrogen, helium, oxygen, and argon, all in a nitrogen background. Since commercially available QITMS systems are incapable of mass analysis at m/z(exp 2), the home-built system is preferred for the evaluation of QITMS technology.

  12. Determination of pesticides associated with suspended sediments in the San Joaquin River, California, USA, using gas chromatography-ion trap mass spectrometry

    USGS Publications Warehouse

    Bergamaschi, B.A.; Baston, D.S.; Crepeau, K.L.; Kuivila, K.M.

    1999-01-01

    An analytical method useful for the quantification of a range of pesticides and pesticide degradation products associated with suspended sediments was developed by testing a variety of extraction and cleanup schemes. The final extraction and cleanup methods chosen for use are suitable for the quantification of the listed pesticides using gas chromatography-ion trap mass spectrometry and the removal of interfering coextractable organic material found in suspended sediments. Methylene chloride extraction followed by Florisil cleanup proved most effective for separation of coextractives from the pesticide analytes. Removal of elemental sulfur was accomplished with tetrabutylammonium hydrogen sulfite. The suitability of the method for the analysis of a variety of pesticides was evaluated, and the method detection limits (MDLs) were determined (0.1-6.0 ng/g dry weight of sediment) for 21 compounds. Recovery of pesticides dried onto natural sediments averaged 63%. Analysis of duplicate San Joaquin River suspended-sediment samples demonstrated the utility of the method for environmental samples with variability between replicate analyses lower than between environmental samples. Eight of 21 pesticides measured were observed at concentrations ranging from the MDL to more than 80 ng/g dry weight of sediment and exhibited significant temporal variability. Sediment-associated pesticides, therefore, may contribute to the transport of pesticides through aquatic systems and should be studied separately from dissolved pesticides.

  13. Efficacy of new mass-trapping devices against Bactrocera oleae (Diptera tephritidae) for minimizing pesticide input in agroecosystems.

    PubMed

    Noce, Maria E; Belfiore, Tiziana; Scalercio, Stefano; Vizzarri, Veronica; Iannotta, Nino

    2009-06-01

    Decreasing pesticide use in olive groves is central to controlling pathogens and pests such as Bactrocera oleae. This has led to the development of mass trapping devices which not only minimize pesticide use but, with improved efficacy of attractants, also decrease costs associated with pest control and ensures that the quality of olive oil is safe for human consumption. This study was undertaken to test a new device which utilizes reduced quantities of both insecticide (lambda-cyalothrin) as well as the female olive fly pheromone (1,7-dioxaspiro-(5.5)-undecane). The new device was tested against an older device manufactured by the same company. The use of plastic polymers as substrate for encapsulating the pheromone allowed for a slower pheromone release, prolonging the efficacy and duration and thus reducing costs. The density of adult populations was monitored using yellow chromotropic traps that were checked every ten days and the degree of olive infestation, as determined by preimago stages, was assessed by analyzing 100 drupes per plot. Infestation analyses were performed every ten days. The control plot had the lowest density of adults and the highest drupe infestation rate. The new devices were more effective than the older devices in both attracting adults and controlling infestation of drupes. Moreover, the new devices containing reduced amounts of pheromone and insecticide were cheaper and exhibited longer functional efficacy. In addition to the slower release of attractants, the plastic polymers used in these newer devices were also more resistant to mechanical and weather degradations. Results demonstrate that mass trapping can indeed be an effective means of controlling B. oleae via eco-sustainable olive farming.

  14. Rapid analysis of animal drug residues by microcolumn solid-phase extraction and thermal desorption-ion trap mass spectrometry

    SciTech Connect

    Barshick, S.A.; Buchanan, M.V.

    1994-11-01

    A new approach was developed for the rapid and quantitative determination of an anthelmintic drug, phenothiazine, in milk. The technique involves a simple extraction procedure using a C{sub 18} microcolumn disc, followed by thermal desorption of the analyte from the disc directly into an ion trap mass spectrometer. The compounds are selectively ionized by isobutane chemical ionization and detected by tandem mass spectrometry. With this approach, 10 ppb detection limits were achieved with as little as 100 {mu}L mild and only 10 min of analysis time. This approach was used to analyze samples of milk taken from a cow administered a one-time therapeutic dose of phenothiazine. The target compound could be detected at 56 post-dosage, corresponding to a concentration of 30 ppb. 13 refs., 3 figs., 2 tabs.

  15. Analysis of environmental contaminates in hair using an ion trap mass spectrometer with a filtered noise field waveboard

    SciTech Connect

    Alcaraz, A.; Hulsey, S.S.; Frantz, C.E.; Andresen, B.D.

    1994-12-31

    A variety of methods have been established using mass spectrometry (MS) for the analysis of chemicals in hair. Much of this past work has been focused on the detection of drugs of abuse. Human hair has been analyzed either directly by probe distillation (DIP) with some preliminary clean-up using HPLC or solid phase extraction (SPE). However, established drug analysis methods do not apply for the detection of some environmental contaminates. In this study, the authors selected 2,4,6-trinitrotoluene (TNT) and malathion as the target compounds. In addition two types of hair samples were analyzed: (1) human hair fortified with either TNT or malathion and (2) hair from mice who ingested the same analytes. The analytical method was DIP-EI-MS/MS with an ion trap mass spectrometer equipped with a filtered noise field wave board.

  16. An electrodynamic ion funnel interface for greater sensitivity and higher throughput with linear ion trap mass spectrometers

    NASA Astrophysics Data System (ADS)

    Page, Jason S.; Tang, Keqi; Smith, Richard D.

    2007-09-01

    An electrospray ionization interface incorporating an electrodynamic ion funnel has been designed and implemented on a linear ion trap mass spectrometer (Thermo Electron, LTQ). We found ion transmission to be greatly improved by replacing the standard capillary-skimmer interface with the capillary-ion funnel interface. An infusion study using a serial dilution of a reserpine solution showed that ion injection (accumulation) times to fill the ion trap at a given automatic gain control (AGC) target value were reduced by ~90% which resulted in an ~10-fold increase in peak intensities. In liquid chromatography tandem MS (LC-MS/MS) experiments performed using a global protein digest sample from the bacterium, Shewanella oneidensis, more peptides and proteins were identified when the ion funnel interface was used in place of the standard interface. This improvement was most pronounced at lower sample concentrations, where extended ion accumulation times are required, resulting in an ~2-fold increase in the number of protein identifications. Implementation of the ion funnel interface on a LTQ Fourier transform (FT) mass spectrometer showed a ~25-50% reduction in spectrum acquisition time. The duty cycle improvement in this case was due to the ion accumulation event contributing a larger portion to the total spectrum acquisition time.

  17. Potential of needle trap microextraction-portable gas chromatography-mass spectrometry for measurement of atmospheric volatile compounds

    NASA Astrophysics Data System (ADS)

    Feijó Barreira, Luís Miguel; Xue, Yu; Duporté, Geoffroy; Parshintsev, Jevgeni; Hartonen, Kari; Jussila, Matti; Kulmala, Markku; Riekkola, Marja-Liisa

    2016-08-01

    Volatile organic compounds (VOCs) play a key role in atmospheric chemistry and physics. They participate in photochemical reactions in the atmosphere, which have direct implications on climate through, e.g. aerosol particle formation. Forests are important sources of VOCs, and the limited resources and infrastructures often found in many remote environments call for the development of portable devices. In this research, the potential of needle trap microextraction and portable gas chromatography-mass spectrometry for the study of VOCs at forest site was evaluated. Measurements were performed in summer and autumn 2014 at the Station for Measuring Ecosystem-Atmosphere Relations (SMEAR II) in Hyytiälä, Finland. During the first part of the campaign (summer) the applicability of the developed method was tested for the determination of monoterpenes, pinonaldehyde, aldehydes, amines and anthropogenic compounds. The temporal variation of aerosol precursors was determined, and evaluated against temperature and aerosol number concentration data. The most abundant monoterpenes, pinonaldehyde and aldehydes were successfully measured, their relative amounts being lower during days when particle number concentration was higher. Ethylbenzene, p- and m-xylene were also found when wind direction was from cities with substantial anthropogenic activity. An accumulation of VOCs in the snow cover was observed in the autumn campaign. Results demonstrated the successful applicability of needle trap microextraction and portable gas chromatography-mass spectrometry for the rapid in situ determination of organic gaseous compounds in the atmosphere.

  18. An improved thin-layer chromatography/mass spectrometry coupling using a surface sampling probe electrospray ion trap system

    SciTech Connect

    Ford, Michael J; Van Berkel, Gary J

    2004-01-01

    A combined surface sampling probe/electrospray emitter coupled with an ion trap mass spectrometer was used for the direct read out of unmodified reversed-phase C18 thin-layer chromatography (TLC) plates. The operation of the surface sampling electrospray ionization interface in positive and negative ionization modes was demonstrated through the direct analysis of TLC plates on which a commercial test mix comprised of four dye compounds viz., rhodamine B, fluorescein, naphthol blue black, and fast green FCF, and an extract of the caffeine-containing plant Ilex vomitoria, were spotted and developed. Acquisition of full-scan mass spectra and automated collection of MS/MS product ion spectra while scanning a development lane along the surface of a TLC plate demonstrated the advantages of using an ion trap in this combination. Details of the sampling system, benefits of analyzing a developed lane in both positive ion and negative ion modes, levels of detection while surface scanning, surface scan speed effects, and the utility of three-dimensional data display, are also discussed.

  19. Sympathetic cooling of a mass-mismatched two-ion chain in a double-well trap potential

    SciTech Connect

    Hasegawa, Taro

    2011-05-15

    Sympathetic cooling of two-ion system, in which one is laser-cooled and the other is sympathetically cooled and their masses are mismatched, in a linear rf trap with a double-well potential is proposed. The double-well potential consists of two wells, and there is one ion in each well. The axial frequencies of the two wells and the spatial interval between them are experimentally controllable. By theoretical analysis, the normal modes of the small oscillations around the equilibrium are derived, and a measure of the sympathetic cooling rate is obtained. As a result, it is found that the sympathetic cooling rate is fast when the frequency of the axial motion of the sympathetically cooled ion is close to that of the laser-cooled ion. In the double-well potential, the sympathetic cooling rate of the ion species whose mass is much heavier or lighter than that of the laser-cooled ion can be fast. The sympathetic cooling rate of C{sub 60}{sup +} by the laser-cooled Ba{sup +} in the double-well potential is estimated to be about 80 times faster than in the conventional setup. The double-well potential may be made by the microfabricated electrode configuration or by the optical dipole force trap.

  20. An improved thin-layer chromatography/mass spectrometry coupling using a surface sampling probe electrospray ion trap system.

    PubMed

    Ford, Michael J; Van Berkel, Gary J

    2004-01-01

    A combined surface sampling probe/electrospray emitter coupled with an ion trap mass spectrometer was used for the direct read out of unmodified reversed-phase C18 thin-layer chromatography (TLC) plates. The operation of the surface sampling electrospray ionization interface in positive and negative ionization modes was demonstrated through the direct analysis of TLC plates on which a commercial test mix comprised of four dye compounds viz., rhodamine B, fluorescein, naphthol blue black, and fast green FCF, and an extract of the caffeine-containing plant Ilex vomitoria, were spotted and developed. Acquisition of full-scan mass spectra and automated collection of MS/MS product ion spectra while scanning a development lane along the surface of a TLC plate demonstrated the advantages of using an ion trap in this combination. Details of the sampling system, benefits of analyzing a developed lane in both positive ion and negative ion modes, levels of detection while surface scanning, surface scan speed effects, and the utility of three-dimensional data display, are also discussed. Copyright 2004 John Wiley & Sons, Ltd.

  1. Quantitative analysis of cytokinins in plants by high performance liquid chromatography: electronspray ionization ion trap mass spectrometry.

    PubMed

    Chen, Weiqi; Gai, Ying; Liu, Shichang; Wang, Renxiao; Jiang, Xiangning

    2010-10-01

    The present paper introduces a highly sensitive and selective method for simultaneous quantification of 12 cytokinins (free form and their conjugates). The method includes a protocol of extraction with methanol/water/formic acid (15/4/1, v/v/v) to the micro-scale samples, pre-purification with solid phase extraction (SPE) cartridges of the extracts, separation with a high performance liquid chromatography (HPLC) and detection by an electrospray ionization ion trap mass spectrometry (ESI-Ion trap-MS) system in a consecutive ion monitoring (CRM) mode at the three stage fragmentation of mass spectrometry (MS(3) ). The lowest detection level of the cytokinins of the method reaches 0.1-2.0 pg with a very wide range of linear regression from 1-512 pg, at the coefficient factors of 0.98-0.99. The feasibility of this method has been proven in the application of the method to the analysis of the trace-amount contents of cytokinins in the micro-scale samples of various types of plant materials, such as aerial parts of rice and poplar leaves etc. 12 endogenous cytokinins had been identified and quantified in the plant tissues, with an acceptable relatively higher recovery rate from 40% to 70%.

  2. Electrospray/Ion Trap Mass Spectrometry for the Detection and Identification of Organisms

    SciTech Connect

    McLuckey, Scott A.; Stephenson, James L., Jr.

    1997-12-31

    Current electrospray ion trap methodology for rapid mixture analysis of proteins used for the identification of microorganisms is described. Development of ion/ion reaction techniques (e.g. reactions of multiply-charged protein cations with singly-charged anions) from both a fundamental and practical approach are presented, detailing the necessary steps and considerations involved in complex mixture analysis. Data describing the reduction of the initial charge states of electrospray ions to arbitrarily low values, the utility of ion/ion reactions for mixture separation on the millisecond time scale, and effects of excess singly-charged reactants on detection and storage efficiency are illustrated.

  3. Weak interaction studies with an on-line Penning trap mass spectrometer.

    SciTech Connect

    Barber, R. C.; Buchinger, F.; Crawford, J. E.; Feng, X.; Gulick, S.; Hackman, G.; Hardy, J. C.; Lee, J. K. P.; Moore, R. B.; Savard, G.; Sharma, K. S.; Uusitalo, J.

    1999-03-10

    Superallowed {beta}-decays are a sensitive probe of the fundamental aspects of the weak interaction. Such decays are used to stringently test the CVC hypothesis, deduce a precise value of the weak vector coupling constant, test the unitarity of the CKM matrix and look for deviation from the V-A structure for the weak interaction. The ability to efficiently capture and store short-lived superallowed beta-emitters in ion traps will help to elucidate discrepancies in the most precise unitarity test of the CKM matrix and tighten the present limits on interactions outside the standard V-A form.

  4. Broad-Spectrum Drug Screening Using Liquid Chromatography-Hybrid Triple-Quadrupole Linear Ion Trap Mass Spectrometry.

    PubMed

    Stone, Judy

    2016-01-01

    Urine is processed with a simple C18 solid-phase extraction (SPE) and reconstituted in mobile phase. The liquid chromatography system (LC) injects 10 μL of extracted sample onto a reverse-phase LC column for gradient analysis with ammonium formate/acetonitrile mobile phases. Drugs in the column eluent become charged in the ion source using positive electrospray ionization (ESI). Pseudomolecular ions (M + H) are analyzed by a hybrid triple-quadrupole linear ion trap (QqQ and QqLIT) mass spectrometer using an SRM-IDA-EPI acquisition. An initial 125 compound selected ion monitoring (SRM) survey scan (triple quadrupole or QqQ mode) is processed by the information-dependent acquisition (IDA) algorithm. The IDA algorithm selects SRM signals from the survey scan with a peak height above the threshold (the three most abundant SRM signals above 1000 cps) to define precursor ions for subsequent dependent scanning. In the dependent QqLIT scan(s), selected precursor ion(s) are passed through the first quadrupole (Q1), fragmented with three different collision energies in the collision cell (Q2 or q), and product ions are collected in the third quadrupole (Q3), now operating as a linear ion trap (LIT). The ions are scanned out of the LIT in a mass dependent manner to produce a full-scan product ion spectrum (m/z 50-700) defined as an Enhanced (meaning acquired in LIT mode) Product Ion (EPI) spectrum (Mueller et al., Rapid Commun Mass Spectrom 19:1332-1338, 2005). Each EPI spectrum is linked to its precursor ion and to the associated SRM peak from the survey scan. EPI spectra are automatically searched against a 125 drug library of reference EPI spectra for identification. When the duty cycle is complete (one survey scan of 125 SRMs plus 0-3 dependent IDA-EPI scans) the mass spectrometer begins another survey scan of the 125 SRMs.

  5. Incorporation of the Mass Concentration and the New Snow Albedo Schemes into the Global Forecasting Model, GEOS-5 and the Impact of the New Schemes over Himalayan Glaciers

    NASA Technical Reports Server (NTRS)

    Yasunari, Teppei

    2012-01-01

    Recently the issue on glacier retreats comes up and many factors should be relevant to the issue. The absorbing aerosols such as dust and black carbon (BC) are considered to be one of the factors. After they deposited onto the snow surface, it will reduce snow albedo (called snow darkening effect) and probably contribute to further melting of glacier. The Goddard Earth Observing System version 5 (GEOS-5) has developed at NASA/GSFC. However, the original snowpack model used in the land surface model in the GEOS-5 did not consider the snow darkening effect. Here we developed the new snow albedo scheme which can consider the snow darkening effect. In addition, another scheme on calculating mass concentrations on the absorbing aerosols in snowpack was also developed, in which the direct aerosol depositions from the chemical transport model in the GEOS-5 were used. The scheme has been validated with the observed data obtained at backyard of the Institute of Low Temperature Science, Hokkaido University, by Dr. Teruo Aoki (Meteorological Research Institute) et aL including me. The observed data was obtained when I was Ph.D. candidate. The original GEOS-5during 2007-2009 over the Himalayas and Tibetan Plateau region showed more reductions of snow than that of the new GEOS-5 because the original one used lower albedo settings. On snow cover fraction, the new GEOS-5 simulated more realistic snow-covered area comparing to the MODIS snow cover fraction. The reductions on snow albedo, snow cover fraction, and snow water equivalent were seen with statistically significance if we consider the snow darkening effect comparing to the results without the snow darkening effect. In the real world, debris cover, inside refreezing process, surface flow of glacier, etc. affect glacier mass balance and the simulated results immediately do not affect whole glacier retreating. However, our results indicate that some surface melting over non debris covered parts of the glacier would be

  6. Improving performance of content-based image retrieval schemes in searching for similar breast mass regions: an assessment.

    PubMed

    Wang, Xiao-Hui; Park, Sang Cheol; Zheng, Bin

    2009-02-21

    This study aims to assess three methods commonly used in content-based image retrieval (CBIR) schemes and investigate the approaches to improve scheme performance. A reference database involving 3000 regions of interest (ROIs) was established. Among them, 400 ROIs were randomly selected to form a testing dataset. Three methods, namely mutual information, Pearson's correlation and a multi-feature-based k-nearest neighbor (KNN) algorithm, were applied to search for the 15 'the most similar' reference ROIs to each testing ROI. The clinical relevance and visual similarity of searching results were evaluated using the areas under receiver operating characteristic (ROC) curves (A(Z)) and average mean square difference (MSD) of the mass boundary spiculation level ratings between testing and selected ROIs, respectively. The results showed that the A(Z) values were 0.893 +/- 0.009, 0.606 +/- 0.021 and 0.699 +/- 0.026 for the use of KNN, mutual information and Pearson's correlation, respectively. The A(Z) values increased to 0.724 +/- 0.017 and 0.787 +/- 0.016 for mutual information and Pearson's correlation when using ROIs with the size adaptively adjusted based on actual mass size. The corresponding MSD values were 2.107 +/- 0.718, 2.301 +/- 0.733 and 2.298 +/- 0.743. The study demonstrates that due to the diversity of medical images, CBIR schemes using multiple image features and mass size-based ROIs can achieve significantly improved performance.

  7. Study on Trap Levels in SrSi2AlO2N3:Eu(2+),Ln(3+) Persistent Phosphors Based on Host-Referred Binding Energy Scheme and Thermoluminescence Analysis.

    PubMed

    Zhuang, Yixi; Lv, Ying; Li, Ye; Zhou, Tianliang; Xu, Jian; Ueda, Jumpei; Tanabe, Setsuhisa; Xie, Rong-Jun

    2016-11-21

    We investigated the effect of trivalent lanthanide substitution on a novel oxynitride persistent phosphor SrSi2AlO2N3:Eu(2+),Ln(3+), which shows green persistent luminescence for more than 2 h. First, an energy level diagram by using the host-referred binding energy (HRBE) scheme was constructed. The location of the energy levels of all divalent and trivalent lanthanides referred to the energy band of the host SrSi2AlO2N3 was estimated. Then, thermoluminescence (TL) measurements in the target persistent phosphors were performed to obtain direct experimental results on the trap depth. We found that the trap levels based on the TL measurements coincided well with the 4f ground states of divalent lanthanide codopants in SrSi2AlO2N3:Eu(2+),Ln(3+). The result strongly suggests the effective traps for persistent luminescence in SrSi2AlO2N3:Eu(2+),Ln(3+) could be due to the aliovalent substitution of Ln(3+) for Sr(2+), which can be controlled by selecting suitable codopant Ln(3+). The work shows the HRBE scheme may offer a way to understand the nature of defects in the persistent phosphor as well as a possible guideline to design new persistent phosphors with required trap depths.

  8. A new Fourier transform based CBIR scheme for mammographic mass classification: a preliminary invariance assessment

    NASA Astrophysics Data System (ADS)

    Gundreddy, Rohith Reddy; Tan, Maxine; Qui, Yuchen; Zheng, Bin

    2015-03-01

    The purpose of this study is to develop and test a new content-based image retrieval (CBIR) scheme that enables to achieve higher reproducibility when it is implemented in an interactive computer-aided diagnosis (CAD) system without significantly reducing lesion classification performance. This is a new Fourier transform based CBIR algorithm that determines image similarity of two regions of interest (ROI) based on the difference of average regional image pixel value distribution in two Fourier transform mapped images under comparison. A reference image database involving 227 ROIs depicting the verified soft-tissue breast lesions was used. For each testing ROI, the queried lesion center was systematically shifted from 10 to 50 pixels to simulate inter-user variation of querying suspicious lesion center when using an interactive CAD system. The lesion classification performance and reproducibility as the queried lesion center shift were assessed and compared among the three CBIR schemes based on Fourier transform, mutual information and Pearson correlation. Each CBIR scheme retrieved 10 most similar reference ROIs and computed a likelihood score of the queried ROI depicting a malignant lesion. The experimental results shown that three CBIR schemes yielded very comparable lesion classification performance as measured by the areas under ROC curves with the p-value greater than 0.498. However, the CBIR scheme using Fourier transform yielded the highest invariance to both queried lesion center shift and lesion size change. This study demonstrated the feasibility of improving robustness of the interactive CAD systems by adding a new Fourier transform based image feature to CBIR schemes.

  9. Multistage fragmentation of ion trap mass spectrometry system and pseudo-MS3 of triple quadrupole mass spectrometry characterize certain (E)-3-(dimethylamino)-1-arylprop-2-en-1-ones: a comparative study.

    PubMed

    Abdelhameed, Ali S; Kadi, Adnan A; Abdel-Aziz, Hatem A; Angawi, Rihab F; Attwa, Mohamed W; Al-Rashood, Khalid A

    2014-01-01

    A new approach was recently introduced to improve the structure elucidation power of tandem mass spectrometry simulating the MS(3) of ion trap mass spectrometry system overcoming the different drawbacks of the latter. The fact that collision induced dissociation in the triple quadrupole mass spectrometer system provides richer fragment ions compared to those achieved in the ion trap mass spectrometer system utilizing resonance excitation. Moreover, extracting comprehensive spectra in the ion trap needs multistage fragmentation, whereas similar fragment ions may be acquired from one stage product ion scan using the triple quadrupole mass spectrometer. The new strategy was proven to enhance the qualitative performance of tandem mass spectrometry for structural elucidation of different chemical entities. In the current study we are endeavoring to prove our hypothesis of the efficiency of the new pseudo-MS(3) technique via its comparison with the MS(3) mode of ion trap mass spectrometry system. Ten pharmacologically and synthetically important (E)-3-(dimethylamino)-1-arylprop-2-en-1-ones (enaminones 4a-j) were chosen as model compounds for this study. This strategy permitted rigorous identification of all fragment ions using triple quadrupole mass spectrometer with sufficient specificity. It can be used to elucidate structures of different unknown components. The data presented in this paper provide clear evidence that our new pseudo-MS(3) may simulate the MS(3) of ion trap spectrometry system.

  10. Imaging MS methodology for more chemical information in less data acquisition time utilizing a hybrid linear ion trap-orbitrap mass spectrometer.

    PubMed

    Perdian, D C; Lee, Young Jin

    2010-11-15

    A novel mass spectrometric imaging method is developed to reduce the data acquisition time and provide rich chemical information using a hybrid linear ion trap-orbitrap mass spectrometer. In this method, the linear ion trap and orbitrap are used in tandem to reduce the acquisition time by incorporating multiple linear ion trap scans during an orbitrap scan utilizing a spiral raster step plate movement. The data acquisition time was decreased by 43-49% in the current experiment compared to that of orbitrap-only scans; however, 75% or more time could be saved for higher mass resolution and with a higher repetition rate laser. Using this approach, a high spatial resolution of 10 μm was maintained at ion trap imaging, while orbitrap spectra were acquired at a lower spatial resolution, 20-40 μm, all with far less data acquisition time. Furthermore, various MS imaging methods were developed by interspersing MS/MS and MS(n) ion trap scans during orbitrap scans to provide more analytical information on the sample. This method was applied to differentiate and localize structural isomers of several flavonol glycosides from an Arabidopsis flower petal in which MS/MS, MS(n), ion trap, and orbitrap images were all acquired in a single data acquisition.

  11. Imaging MS Methodology for More Chemical Information in Less Data Acquisition Time Utilizing a Hybrid Linear Ion Trap-Orbitrap Mass Spectrometer

    SciTech Connect

    Perdian, D. C.; Lee, Young Jin

    2010-11-15

    A novel mass spectrometric imaging method is developed to reduce the data acquisition time and provide rich chemical information using a hybrid linear ion trap-orbitrap mass spectrometer. In this method, the linear ion trap and orbitrap are used in tandem to reduce the acquisition time by incorporating multiple linear ion trap scans during an orbitrap scan utilizing a spiral raster step plate movement. The data acquisition time was decreased by 43-49% in the current experiment compared to that of orbitrap-only scans; however, 75% or more time could be saved for higher mass resolution and with a higher repetition rate laser. Using this approach, a high spatial resolution of 10 {micro}m was maintained at ion trap imaging, while orbitrap spectra were acquired at a lower spatial resolution, 20-40 {micro}m, all with far less data acquisition time. Furthermore, various MS imaging methods were developed by interspersing MS/MS and MSn ion trap scans during orbitrap scans to provide more analytical information on the sample. This method was applied to differentiate and localize structural isomers of several flavonol glycosides from an Arabidopsis flower petal in which MS/MS, MSn, ion trap, and orbitrap images were all acquired in a single data acquisition.

  12. Comprehensive identification of walnut polyphenols by liquid chromatography coupled to linear ion trap-Orbitrap mass spectrometry.

    PubMed

    Regueiro, Jorge; Sánchez-González, Claudia; Vallverdú-Queralt, Anna; Simal-Gándara, Jesús; Lamuela-Raventós, Rosa; Izquierdo-Pulido, Maria

    2014-01-01

    Epidemiologic studies and clinical trials have demonstrated consistent benefits of walnut consumption on coronary heart disease risk and other chronic diseases. Walnuts (Juglans regia L.) have been described previously as a rich source of polyphenols with a broad array of different structures. However, an accurate screening of its complete phenolic profile is still lacking. In the present work, liquid chromatography coupled with electrospray ionization hybrid linear trap quadrupole-Orbitrap mass spectrometry (LC-LTQ-Orbitrap) was applied for a comprehensive identification of phenolic compounds in walnuts. A total of 120 compounds, including hydrolysable and condensed tannins, flavonoids and phenolic acids were identified or tentatively identified on the base of their retention times, accurate mass measurements and subsequent mass fragmentation data, or by comparing with reference substances and literature. The peak area of each signal in mass chromatograms was used to provide semiquantitative information for comparison purposes. The most abundant ions were observed for ellagitannins, ellagic acid and its derivatives. Furthermore, the high-resolution MS analysis revealed the presence of eight polyphenols that have never been reported in walnuts: stenophyllanin C, malabathrin A, eucalbanin A, cornusiin B, heterophylliin E, pterocarinin B, reginin A and alienanin B. Copyright © 2013 Elsevier Ltd. All rights reserved.

  13. Quasi-trapping chemical ionization source based on a commercial VUV lamp for time-of-flight mass spectrometry.

    PubMed

    Chen, Ping; Hou, Keyong; Hua, Lei; Xie, Yuanyuan; Zhao, Wuduo; Chen, Wendong; Chen, Chuang; Li, Haiyang

    2014-02-04

    The application of VUV lamp-based single photon ionization (SPI) was limited due to low photon energy and poor photon flux density. In this work, we designed a quasi-trapping chemical ionization (QT-CI) source with a commercial VUV 10.6 eV krypton lamp for time-of-flight mass spectrometry. The three electrode configuration ion source with RF voltage on the second electrode constitutes a quasi-trapping region, which has two features: accelerating the photoelectrons originated from the photoelectric effect with VUV light to trigger the chemical ionization through ion-molecule reaction and increasing the collisions between reactant ion O2(+) and analyte molecules to enhance the efficiency of chemical ionization. Compared to single SPI based on VUV krypton lamp, the QT-CI ion source not only apparently improved the sensitivity (e.g., 12-118 fold enhancement were achieved for 13 molecules, including aromatic hydrocarbon, chlorinated hydrocarbon, hydrogen sulfide, etc.) but also extended the range of ionizable molecules with ionization potential (IP) higher than 10.6 eV, such as propane, dichloroethane, and trichloromethane.

  14. An electrodynamic ion funnel interface for greater sensitivity and higher throughput with linear ion trap mass spectrometers

    SciTech Connect

    Page, Jason S.; Tang, Keqi; Smith, Richard D.

    2007-09-01

    An electrospray ionization interface incorporating an electrodynamic ion funnel has been designed and implemented in conjunction with a linear ion trap mass spectrometer (Thermo Electron, LTQ). We found ion transmission to be greatly improved by replacing the standard capillary-skimmer interface with the capillary-ion funnel interface. An infusion study using a serial dilution of a reserpine solution showed that ion injection times to fill the ion trap were reduced by ~90% which resulted in an ~10-fold increase in reported peak intensities. In liquid chromatography (LC)-MS and LC tandem MS (MS/MS) experiments performed using a proteomic sample from the bacterium, Shewanella oneidensis, the ion funnel interface provided an ~7-fold reduction in ion injection (accumulation) times. In a series of LC-MS/MS experiments we found that more dilute S. oneidensis samples provided more peptide and protein identifications when the ion funnel interface was used in place of the standard interface. This improvement was most pronounced at lower sample concentrations, where extended ion accumulation times are required, resulting in an ~2-fold increase in the number of protein identifications. Implementation of the ion funnel interface with a LTQ Fourier transform (FT) MS requiring much greater ion populations resulted in spectrum acquisition times reduced by ~25 to 50%.

  15. Determination of omeprazole in human plasma by liquid chromatography-electrospray quadrupole linear ion trap mass spectrometry.

    PubMed

    Wang, Jian; Wang, Yingwu; Fawcett, J Paul; Wang, Yan; Gu, Jingkai

    2005-09-15

    An analytical method for the determination of omeprazole in human plasma has been developed based on liquid chromatography mass spectrometry. The analyte and internal standard sildenafil are extracted from plasma by liquid-liquid extraction using diethyl ether:dichloromethane (60:40, v/v) and separated by reversed phase high-performance liquid chromatography (HPLC) using acetonitrile:methanol:10 mM ammonium acetate (37.5:37.5:25, v/v/v) as mobile phase. Detection is carried out by multiple reaction monitoring on a Q TRAP LC/MS/MS system (Q TRAP). The method has a chromatographic run time of 3.5 min and is linear within the range 0.50-800 ng/mL. Intra- and inter-day precision expressed as relative standard deviation ranged from 0.4 to 8.5% and from 1.2 to 6.8%, respectively. Assay expressed as relative error was <5.7%. The method has been applied in a bioequivalence study of two capsule formulations of omeprazole.

  16. Resonance activation and collision-induced-dissociation of ions using rectangular wave dipolar potentials in a digital ion trap mass spectrometer.

    PubMed

    Xu, Fuxing; Wang, Liang; Dai, Xinhua; Fang, Xiang; Ding, Chuan-Fan

    2014-04-01

    Collision-induced dissociation (CID) of ions by resonance activation in a quadrupole ion trap is usually accomplished by resonance exciting the ions to higher kinetic energy, whereby the high kinetic energy ions collide with a bath gas, such as helium or argon, inside the trap and dissociate to fragments. A new ion activation method using a well-defined rectangular wave dipolar potential formed by dividing down the trapping rectangular waveform is developed and examined herein. The mass-selected parent ions are resonance excited to high kinetic energies by simply changing the frequency of the rectangular wave dipolar potential and dissociation proceeds. A relationship between the ion mass and the activation waveform frequency is also identified and described. This highly efficient (CID) procedure can be realized by simply changing the waveform frequency of the dipolar potential, which could certainly simplify tandem mass spectrometry analysis methods.

  17. Quantitative analysis of [Dmt(1)]DALDA in ovine plasma by capillary liquid chromatography-nanospray ion-trap mass spectrometry.

    PubMed

    Wan, Haibao; Umstot, Edward S; Szeto, Hazel H; Schiller, Peter W; Desiderio, Dominic M

    2004-04-15

    The synthetic opioid peptide analog Dmt-D-Arg-Phe-Lys-NH(2) ([Dmt(1)]DALDA; [Dmt= 2',6'-dimethyltyrosine) is a highly potent and selective mu opioid-receptor agonist. A very sensitive and robust capillary liquid chromatography/nanospray ion-trap (IT) mass spectrometry method has been developed to quantify [Dmt(1)]DALDA in ovine plasma, using deuterated [Dmt(1)]DALDA as the internal standard. The standard MS/MS spectra of d(0)- and d(5)-[Dmt(1)]DALDA were obtained, and the collision energy was experimentally optimized to 25%. The product ion [ M + 2H-NH(3)](2+) (m/z 312.2) was used to identify and to quantify the synthetic opioid peptide analog in ovine plasma samples. The MS/MS detection sensitivity for [Dmt(1)]DALDA was 625 amol. A calibration curve was constructed, and quantitative analysis was performed on a series of ovine plasma samples.

  18. The detection of piroxicam, tenoxicam and their metabolites in equine urine by electrospray ionisation ion trap mass spectrometry.

    PubMed

    McKinney, Andrew R; Suann, Craig J; Stenhouse, Allen M

    2004-01-01

    An investigation has been conducted into the metabolism and urinary excretion of orally administered piroxicam and tenoxicam in the horse. The major component detected in urine after the administration of piroxicam was 5'-hydroxypiroxicam, which was detectable up to 24 h post-administration. Unchanged piroxicam was present only as a minor component. In contrast, unchanged tenoxicam was the major component observed after the administration of tenoxicam, being detectable for 72 h post-administration, while 5'-hydroxytenoxicam was a minor component. Phase II beta-glucuronide conjugation in each case was found to be negligible. The ion trap mass spectral characteristics of piroxicam, tenoxicam, 5'-hydroxypiroxicam and 5'-hydroxytenoxicam under electrospray ionisation conditions were examined in some detail.

  19. Detection of lysergic acid diethylamide (LSD) in urine by gas chromatography-ion trap tandem mass spectrometry.

    PubMed

    Sklerov, J H; Kalasinsky, K S; Ehorn, C A

    1999-10-01

    A confirmatory method for the detection and quantitation of lysergic acid diethylamide (LSD) is presented. The method employs gas chromatography-tandem mass spectrometry (GC-MS-MS) using an internal ionization ion trap detector for sensitive MS-MS-in-time measurements of LSD extracted from urine. Following a single-step solid-phase extraction of 5 mL of urine, underivatized LSD can be measured with limits of quantitation and detection of 80 and 20 pg/mL, respectively. Temperature-programmed on-column injections of urine extracts were linear over the concentration range 20-2000 pg/mL (r2 = 0.999). Intraday and interday coefficients of variation were < 6% and < 13%, respectively. This procedure has been applied to quality-control specimens and LSD-positive samples in this laboratory. Comparisons with alternate GC-MS methods and extraction procedures are discussed.

  20. Surface-activated chemical ionization ion trap mass spectrometry in the analysis of amphetamines in diluted urine samples.

    PubMed

    Cristoni, Simone; Bernardi, Luigi Rossi; Gerthoux, Piermario; Gonella, Elisabetta; Mocarelli, Paolo

    2004-01-01

    A new ionization method, named surface-activated chemical ionization (SACI), was employed for the analysis of five amphetamines (3,4-methylenedioxyamphetamine (MDA), 3,4-methylenedioxymethamphetamine (MDMA), 3,4-methylenedioxyethylamphetamine (MDE), amphetamine and methamphetamine) by ion trap mass spectrometry. The results so obtained have been compared with those achieved by using atmospheric pressure chemical ionization (APCI) and electrospray ionization (ESI) using the same instrument, clearly showing that SACI is the most sensitive of the three. The limit of detection and linearity range for SACI were compared with those obtained using APCI and ESI, showing that the new SACI approach provides the best results for both criteria. SACI was used to analyze MDA, MDMA MDE, amphetamine and methamphetamine in four urine samples, and the quantitation results are compared with those achieved using ESI.

  1. Complete structural characterization of ceramides as [M-H](-) ions by multiple-stage linear ion trap mass spectrometry.

    PubMed

    Hsu, Fong-Fu

    2016-11-01

    Ceramide is a huge lipid family consisting of diversified structures including various modifications in the fatty acyl chain and the long chain base (LCB). In this contribution, negative-ion ESI linear ion-trap multiple-stage mass spectrometric method (LIT MS(n)) towards complete structural determination of ceramides in ten major families characterized as the [M-H](-) ions is described. Multiple sets of fragment ions reflecting the fatty acyl chain and LCB were observed in the CID MS(2) spectrum, while the sequential MS(3) and MS(4) spectra contain structural information for locating the double bond and the functional groups, permitting realization of the fragmentation processes. Thereby, differentiation of ceramide molecules varied by chain length, the LCB (sphingosine, phytosphigosine, 6-hydroxy-sphingosine), and by the modification (α-hydroxy-, β-hydroxy-, ω-hydroxy-FA) can be achieved; and many isomeric structures in the biological specimen can be revealed in detail.

  2. Using liquid chromatography-ion trap mass spectrometry to determine pharmaceutical residues in Taiwanese rivers and wastewaters.

    PubMed

    Chen, Hsin-Chang; Wang, Pi-Lien; Ding, Wang-Hsien

    2008-06-01

    To establish their environmental concentrations and to support surface water protection programs, we have undertaken a preliminary study of the concentrations of selected acidic and neutral pharmaceutical residues (clofibric acid, ketoprofen, ibuprofen, diclofenac and carbamazepine) in Taiwanese river and wastewater samples. These pharmaceutical residues were extracted from the water samples through the Oasis HLB solid-phase extraction (SPE). The analytes were then identified and quantified using liquid chromatography-ion trap mass spectrometry with dual-polarity electrospray ionization in the product ion scan mode. The limits of quantification (LOQs) ranged between 0.5 and 20 ngl(-1) for 250 ml samples of water. We investigated the intra- and interbatch precision and accuracy at two levels of concentration. The selected analytes were detected at concentrations ranging from <0.5 to 960 ngl(-1) in wastewater treatment plant effluents and river water samples.

  3. Characterization of primaquine imidazolidin-4-ones with antimalarial activity by electrospray ionization-ion trap mass spectrometry

    NASA Astrophysics Data System (ADS)

    Vale, Nuno; Moreira, Rui; Gomes, Paula

    2008-02-01

    The extensive characterization by electrospray ionization-ion trap mass spectrometry (ESI-MSn) of 20 imidazolidin-4-ones derived from the antimalarial primaquine was well obtained. These compounds are being under investigation as potential antimalarials, as they have been previously found to be active against rodent P. berghei malaria and to be highly stable under physiological conditions. Experiments by collision-induced dissociation (CID) in the nozzle-skimmer region or by tandem-MS have shown the title compounds to be remarkably stable. Mechanisms are proposed to explain the major fragmentations observed in ESI-MSn experiments. Overall, this work represents an unprecedented contribution to a deeper insight into imidazolidin-4-one antimalarials based on a classic 8-aminoquinolinic scaffold. Data herein reported and discussed may be an useful guide for future studies on therapeutically relevant molecules possessing either the 8-aminoquinoline or the imidazolidin-4-one motifs.

  4. Dual electrospray ion source for electron-transfer dissociation on a hybrid linear ion trap-orbitrap mass spectrometer.

    PubMed

    Williams, D Keith; McAlister, Graeme C; Good, David M; Coon, Joshua J; Muddiman, David C

    2007-10-15

    A dual electrospray ionization source (ESI) has been modified to simultaneously produce cations and anions, one from each emitter, for performing rapid electron-transfer dissociation (ETD) ion/ion reactions on a hybrid linear ion trap-orbitrap mass spectrometer. Unlike the pulsed dual ESI sources that were used to generate ETD reagent ions, this source separates the emitters in space, rather than time, by physically switching which one is in front of the atmospheric inlet. The new arrangement allows for substantially enhanced spray stability and decreased switching times (

  5. Direct determination of polycyclic aromatic hydrocarbons in solid matrices using laser desorption/laser photoionization ion trap mass spectrometry.

    PubMed

    Specht, A A; Blades, M W

    2003-06-01

    The development and characterization of a new instrument for solid sampling which couples IR laser desorption followed by UV laser photo-ionization and analysis using an ion trap mass spectrometer has been investigated. For calibration, a new type of solid sample preparation involving activated charcoal as the solid substrate was used. This solid sample provided a steady signal for several thousand laser shots, which allowed optimization of the experimental procedure. It was found that both the IR and UV intensity and the delay between them play an important role in both the magnitude and type of signals observed. A method of gas phase accumulation with multiple laser shots was examined. Finally, this technique was demonstrated to be effective in providing direct qualitative information for N.I.S.T. SRM 1944 river sediment sample with no sample pre-treatment.

  6. A quadrupole ion trap mass spectrometer for in-situ UHV analyses on Earth and other planetary environments

    NASA Astrophysics Data System (ADS)

    Cox, S. E.; Madzunkov, S. M.; Simcic, J.; Farley, K. A.

    2014-12-01

    The JPL quadrupole ion trap mass spectrometer presents an exceptional opportunity for combining cutting edge terrestrial geochemical research with the next generation of extraterrestrial science. The QIT is a small mass spectrometer that filters particles of different mass by electron ionization and subsequent separation with a quadrupole RF field. The latest version is capable of achieving very high resolution (R > 1000) without an increase in power consumption through the addition of a dipole RF to augment the primary quadrupole field. Crucially, we demonstrate the ability to achieve this resolution with high sensitivity (> 1014 cps/Torr), and at UHV without the addition of a cooling gas. In this mode, the high sensitivity and extremely low background allow the measurement of a large number of species in very small samples. Most laboratory instruments are too heavy, large, and energy-intensive to fly on spacecraft in their optimal forms. As a result, instruments for spaceflight have traditionally been heavily-modified versions of terrestrial instruments, designed to be lighter, smaller, and more efficient than their terrestrial counterparts, at the expense of analytical capabilities. The JPL QIT, in contrast, weighs less than 1 kg, is only a few cm in size, and consumes less than 30W. Only the accompanying UHV system and supporting electronics must be extensively redesigned for spaceflight, and NASA already possesses pumps capable of fulfilling this need. The opportunity for parallel development for terrestrial and extraterrestrial labs and the capability of direct comparison between planetary science and terrestrial geochemistry will benefit both fields.

  7. Identification of cephapirin metabolites and degradants in bovine milk by electrospray ionization--ion trap tandem mass spectrometry.

    PubMed

    Heller, D N; Kaplan, D A; Rummel, N G; von Bredow, J

    2000-12-01

    Liquid chromatography-ion trap tandem mass spectrometry (LC-MS/MS) with electrospray ionization was used to identify cephapirin metabolites and degradants in milk from cows dosed with cephapirin. The milk was extracted according to a previously published procedure. Structures for various components were tentatively identified by their molecular weight, product ion mass spectra, and/or correspondence to standard mass spectra. These components may have occurred as metabolites or as degradants that occurred on storage or during extraction. Compounds identified in the milk included cephapirin, desacetylcephapirin, cephapirin lactone, hydrolyzed cephapirin, and a reduced cephapirin lactone that has not previously been reported. Methylcephapirin was also identified, possibly as a trace contaminant in the formulation. Analysis of incurred milk extracts showed that cephapirin and desacetylcephapirin are the major residues in milk. Desacetylcephapirin residues persisted about as long as the parent drug. The detection limit for both residues by LC-MS/MS was approximately 1 ng/mL in milk. These results have implications for microbiological methods or rapid test kits, if such methods or kits respond to cephapirin metabolites and degradants present in the milk.

  8. Top-Down Proteomics on a Chromatographic Time Scale Using Linear Ion Trap Fourier Transform Hybrid Mass Spectrometers

    PubMed Central

    Parks, Bryan A.; Jiang, Lihua; Thomas, Paul M.; Wenger, Craig D.; Roth, Michael J.; Boyne, Michael T.; Burke, Patricia V.; Kwast, Kurt E.; Kelleher, Neil L.

    2008-01-01

    Proteomics has grown significantly with the aid of new technologies that consistently are becoming more streamlined. While processing of proteins from a whole cell lysate is typically done in a bottom-up fashion utilizing MS/MS of peptides from enzymatically digested proteins, top-down proteomics is becoming a viable alternative that until recently has been limited largely to offline analysis by tandem mass spectrometry. Here we describe a method for high-resolution tandem mass spectrometery of intact proteins on a chromatographic time scale. In a single liquid chromatography–tandem mass spectrometry (LC–MS/MS) run, we have identified 22 yeast proteins with molecular weights from 14 to 35 kDa. Using anion exchange chromatography to fractionate a whole cell lysate before online LC–MS/MS, we have detected 231 metabolically labeled (14N/15N) protein pairs from Saccharomyces cerevisiae. Thirty-nine additional proteins were identified and characterized from LC–MS/MS of selected anion exchange fractions. Automated localization of multiple acetylations on Histone H4 was also accomplished on an LC time scale from a complex protein mixture. To our knowledge, this is the first demonstration of top-down proteomics (i.e., many identifications) on linear ion trap Fourier transform (LTQ FT) systems using high-resolution MS/MS data obtained on a chromatographic time scale. PMID:17915963

  9. Simultaneous analysis of strychnine and brucine and their major metabolites by liquid chromatography-electrospray ion trap mass spectrometry.

    PubMed

    Chen, Xueguo; Lai, Yongquan; Cai, Zongwei

    2012-04-01

    A liquid chromatography-electrospray ionization-ion trap mass spectrometry (LC-ESI-ITMS) method was developed for the simultaneous analysis of strychnine, brucine and their major metabolites. Strychnine and brucine were individually incubated with rat liver S9 fraction. The incubation samples were pooled together and analyzed with LC-ESI-ITMS in positive ion and full-scan detection mode. The calibration curves of strychnine and brucine in rat liver showed good linearity in ranges of 0.020 to 8.0 µg/mL for strychnine and 0.020 to 8.5 µg/mL for brucine. The limits of detections were both 0.008 µg/mL and the recoveries were 88.3 and 83.2% for strychnine and brucine, respectively. Two metabolites were identified as strychnine N-oxide and brucine N-oxide by comparing the molecular mass, retention time, full-scan mass spectra, tandem MS and MS(3) spectra with those of strychnine and brucine. The developed method provided high sensitivity and selectivity for the determination of poisonous alkaloids and their major metabolites and can be applied in the determination of samples in forensic and clinically toxicological cases.

  10. Some Rare Earth Elements Analysis by Microwave Plasma Torch Coupled with the Linear Ion Trap Mass Spectrometry

    PubMed Central

    Xiong, Xiaohong; Jiang, Tao; Qi, Wenhao; Zuo, Jun; Yang, Meiling; Fei, Qiang; Xiao, Saijin; Yu, Aimin; Zhu, Zhiqiang; Chen, Huanwen

    2015-01-01

    A sensitive mass spectrometric analysis method based on the microwave plasma technique is developed for the fast detection of trace rare earth elements (REEs) in aqueous solution. The plasma was produced from a microwave plasma torch (MPT) under atmospheric pressure and was used as ambient ion source of a linear ion trap mass spectrometer (LTQ). Water samples were directly pneumatically nebulized to flow into the plasma through the central tube of MPT. For some REEs, the generated composite ions were detected in both positive and negative ion modes and further characterized in tandem mass spectrometry. Under the optimized conditions, the limit of detection (LOD) was at the level 0.1 ng/mL using MS2 procedure in negative mode. A single REE analysis can be completed within 2~3 minutes with the relative standard deviation ranging between 2.4% and 21.2% (six repeated measurements) for the 5 experimental runs. Moreover, the recovery rates of these REEs are between the range of 97.6%–122.1%. Two real samples have also been analyzed, including well and orange juice. These experimental data demonstrated that this method is a useful tool for the field analysis of REEs in water and can be used as an alternative supplement of ICP-MS. PMID:26421013

  11. Background-free beta-decay half-life measurements by in-trap decay and high-resolution MR-ToF mass analysis

    NASA Astrophysics Data System (ADS)

    Wolf, R. N.; Atanasov, D.; Blaum, K.; Kreim, S.; Lunney, D.; Manea, V.; Rosenbusch, M.; Schweikhard, L.; Welker, A.; Wienholtz, F.; Zuber, K.

    2016-06-01

    In-trap decay in ISOLTRAP's radiofrequency quadrupole (RFQ) ion beam cooler and buncher was used to determine the lifetime of short-lived nuclides. After various storage times, the remaining mother nuclides were mass separated from accompanying isobaric contaminations by the multi-reflection time-of-flight mass separator (MR-ToF MS), allowing for a background-free ion counting. A feasibility study with several online measurements shows that the applications of the ISOLTRAP setup can be further extended by exploiting the high resolving power of the MR-ToF MS in combination with in-trap decay and single-ion counting.

  12. External interface for trap-and-release membrane introduction mass spectrometry applied to the detection of inorganic chloramines and chlorobenzenes in water.

    PubMed

    Riter, L S; Charles, L; Turowski, M; Cooks, R G

    2001-01-01

    Construction and evaluation of an external configuration trap-and-release membrane introduction system for mass spectrometry is described. This novel interface allows independent control of the temperature of the membrane and eliminates the dependence of membrane heating efficiency on its position in the ion source. The external trap-and-release MIMS configuration is successfully applied to detection of inorganic chloramines and chlorobenzenes. The method is shown to give temporal resolution of volatile vs. semi-volatile compounds, which increases its sensitivity for semi-volatiles in the presence of volatiles and provides an additional selectivity parameter. Further selectivity is provided by tandem mass spectrometry. Copyright 2001 John Wiley & Sons, Ltd.

  13. Detection and Characterization of Low Abundance Glycopeptides Via Higher-Energy C-Trap Dissociation and Orbitrap Mass Analysis

    NASA Astrophysics Data System (ADS)

    Hart-Smith, Gene; Raftery, Mark J.

    2012-01-01

    Broad-scale mass spectrometric analyses of glycopeptides are constrained by the considerable complexity inherent to glycoproteomics, and techniques are still being actively developed to address the associated analytical difficulties. Here we apply Orbitrap mass analysis and higher-energy C-trap dissociation (HCD) to facilitate detailed insights into the compositions and heterogeneity of complex mixtures of low abundance glycopeptides. By generating diagnostic oxonium product ions at mass measurement errors of <5 ppm, highly selective glycopeptide precursor ion detections are made at sub-fmol limits of detection: analyses of proteolytic digests of a hen egg glycoprotein mixture detect 88 previously uncharacterized glycopeptides from 666 precursor ions selected for MS/MS, with only one false positive due to co-fragmentation of a non-glycosylated peptide with a glycopeptide. We also demonstrate that by (1) identifying multiple series of glycoforms using high mass accuracy single stage MS spectra, and (2) performing product ion scans at optimized HCD collision energies, the identification of peptide + N-acetylhexosamine (HexNAc) ions (Y1 ions) can be readily achieved at <5 ppm mass measurement errors. These data allow base peptide sequences and glycan compositional information to be attained with high confidence, even for glycopeptides that produce weak precursor ion signals and/or low quality MS/MS spectra. The glycopeptides characterized from low fmol abundances using these methods allow two previously unreported glycosylation sites on the Gallus gallus protein ovoglycoprotein (amino acids 82 and 90) to be confirmed; considerable glycan heterogeneities at amino acid 90 of ovoglycoprotein, and amino acids 34 and 77 of Gallus gallus ovomucoid are also revealed.

  14. Analysis of Microorganisms by Oxidative and Non-Oxidative Pyrolysis Gas Chromatography Ion Trap Mass Spectrometry.

    DTIC Science & Technology

    1992-04-01

    Bacillus subtilis, Bacillus pumilus , Bacillus lichenformis, and Bacillus amyloliquefaciens by Pyrolysis-gas Liquid Chromatography, Deoxyribonucleic...FIGURES Number Page 1. Curie point pyrolysis GC-ITD data for Bacillus subtilis ................... 16 2. Total Ion Chromatograms for Bacillus subtilis...under oxidative and non-oxidative pyrolysis conditions ................................... 17 3. Total Lipid Mass Spectra for Bacillus subtilis under

  15. Determining the site of spin trapping of the equine myoglobin radical by combined use of EPR, electrophoretic purification, and mass spectrometry.

    PubMed

    Harris, Michael N; Burchiel, Scott W; Winyard, Paul G; Engen, John R; Mobarak, Charlotte D; Timmins, Graham S

    2002-12-01

    Although myoglobin protein radicals are thought important intermediates in peroxide-induced toxicity, the site of spin trapping of this radical in equine myoglobin using the trap 3,5-dibromo-4-nitrosobenzene sulfonate (DBNBS) is unclear. We have combined EPR, electrophoretic adduct purification, and mass spectrometry approaches to unambiguously determine the site of trapping to be Tyr-103 and suggest that reports of trapping at Trp-7 or Trp-14 may be due to nonradical addition to proteolytically derived Trp-containing peptides with DBNBS. The technique developed here of combining electrophoretic separation of DBNBS adducts with MS of resultant peptides will also allow proteomic-like approaches to determining identities and sites of radical formation and translocation on complex mixtures of proteins.

  16. A New Approach to Develop Computer-Aided Diagnosis Scheme of Breast Mass Classification Using Deep Learning Technology.

    PubMed

    Qiu, Yuchen; Yan, Shiju; Gundreddy, Rohith Reddy; Wang, Yunzhi; Cheng, Samuel; Liu, Hong; Zheng, Bin

    2017-04-18

    To develop and test a deep learning based computer-aided diagnosis (CAD) scheme of mammograms for classifying between malignant and benign masses. An image dataset involving 560 regions of interest (ROIs) extracted from digital mammograms was used. After down-sampling each ROI from 512×512 to 64×64 pixel size, we applied an 8 layer deep learning network that involves 3 pairs of convolution-max-pooling layers for automatic feature extraction and a multiple layer perceptron (MLP) classifier for feature categorization to process ROIs. The 3 pairs of convolution layers contain 20, 10, and 5 feature maps, respectively. Each convolution layer is connected with a max-pooling layer to improve the feature robustness. The output of the sixth layer is fully connected with a MLP classifier, which is composed of one hidden layer and one logistic regression layer. The network then generates a classification score to predict the likelihood of ROI depicting a malignant mass. A four-fold cross validation method was applied to train and test this deep learning network. The results revealed that this CAD scheme yields an area under the receiver operation characteristic curve (AUC) of 0.696±0.044, 0.802±0.037, 0.836±0.036, and 0.822±0.035 for fold 1 to 4 testing datasets, respectively. The overall AUC of the entire dataset is 0.790±0.019. This study demonstrates the feasibility of applying a deep learning based CAD scheme to classify between malignant and benign breast masses without a lesion segmentation, image feature computation and selection process.

  17. A novel ion trap that enables high duty cycle and wide m/z range on an orthogonal injection TOF mass spectrometer.

    PubMed

    Loboda, Alexander V; Chernushevich, Igor V

    2009-07-01

    Although TOF analyzers with orthogonal ion injection provide the whole spectrum without scanning, their duty cycle is low compared with scanning analyzers in single ion monitoring mode. Typical duty cycle is in the range of 5% to 30% depending on the instrument geometry and ion m/z value. We present here a novel trapping/releasing setup, which offers the duty cycle near 100% over a wide range. Operation in the mass range from m/z 120 to almost 2000 is demonstrated. Ions are trapped in a short linear ion trap at the end of the collision cell in an axial pseudopotential well created by additional rf ("AC") voltage applied to all four rods of the trap with the same amplitude and phase. The pseudopotential created by AC field is mass dependent, and by ramping down the AC voltage, ions can be released from the trap sequentially from high m/z to low, while all ions are gaining the same kinetic energy. Upon entering the TOF accelerator, ions with lower m/z catch up with heavier ions, and the AC ramp parameters can be selected to make all ions meet in the center of the TOF extraction region, resulting in sensitivity gains from 3 to 14 without loss of mass accuracy or resolution.

  18. Area-wide mass trapping by pheromone-based attractants for the control of sugar beet weevil (Bothynoderes punctiventris Germar, Coleoptera: Curculionidae).

    PubMed

    Drmić, Zrinka; Tóth, Miklós; Lemić, Darija; Grubišić, Dinka; Pospišil, Milan; Bažok, Renata

    2017-10-01

    Owing to the changing climate, narrow crop rotation, and changes in insecticide application practice, sugar beet weevil (SBW) (Bothynoderes punctiventris Germar) has become the most important economic pest in sugar beet. To develop alternative control methods, an area-wide (AW) control program using aggregation pheromones was implemented over 4 years on an area of 6 and 14.8 km(2) in east Croatia. The mass trapping of SBW on the 'old' sugar beet fields reduced the population from 0.73% to 11.59%. Owing to the strong attack, mass trapping was not effective enough to avoid an insecticide application. However, it significantly reduced the number of insecticide applications, the amount of insecticide used, and the damage compared to the fields outside the mass trapping area. This is the first study to implement an AW program for SBW. It may not be possible to state from this study that trapping alone can reduce the SBW population below the economic threshold level. However, the data do suggest that trapping can play an important role in the reduction of insecticide applications and in creating an integrated pest management plan for dealing with SBW under similar circumstances. © 2017 Society of Chemical Industry. © 2017 Society of Chemical Industry.

  19. Factors determining the performance of triple quadrupole, quadrupole ion trap and sector field mass spectrometer in electrospray ionization mass spectrometry. 2. Suitability for de novo sequencing.

    PubMed

    Premstaller, A; Huber, C G

    2001-01-01

    The sequence coverage by fragment ions resulting from collision-induced dissociation in a triple stage quadrupole (TSQ) and a quadrupole ion trap (QIT) mass spectrometer of 10-20-mer oligonucleotides was investigated. While (a-B) and w ion series were the most abundant on both instruments, additional ion series of sequence relevance were preferably formed in the TSQ. Thus, a total number of 83 fragment ions were used to deduce the complete sequence of a 10-mer oligonucleotide of mixed sequence from a tandem mass spectrum recorded on the TSQ. The complete sequence was also encoded in the 28 fragments that were obtained from the QIT under comparable fragmentation conditions. Spectrum complexity increased considerably at the cost of signal-to-noise ratio upon fragmentation of a 20-mer oligonucleotide in the TSQ, whereas spectrum interpretation with longer oligonucleotides was significantly more straightforward in spectra recorded on the QIT. The extent of fragmentation had to be optimized by appropriate setting of collision energy and choice of precursor ion charge state in order to obtain full sequence coverage by fragments for de novo sequencing. Moreover, full sequence information was also dependent on base sequence because of the low tendency of backbone cleavage at thymidines. Tandem mass spectrometry on the QIT yielded redundant information that was successfully utilized to deduce the complete sequence of 20-mer oligonucleotides with high confidence. Copyright 2001 John Wiley & Sons, Ltd.

  20. Screening of Carotenoids in Tomato Fruits by Using Liquid Chromatography with Diode Array-Linear Ion Trap Mass Spectrometry Detection.

    PubMed

    Gentili, Alessandra; Caretti, Fulvia; Ventura, Salvatore; Pérez-Fernández, Virginia; Venditti, Alessandro; Curini, Roberta

    2015-08-26

    This paper presents an analytical strategy for a large-scale screening of carotenoids in tomato fruits by exploiting the potentialities of the triple quadrupole-linear ion trap hybrid mass spectrometer (QqQLIT). The method involves separation on C30 reversed-phase column and identification by means of diode array detection (DAD) and atmospheric pressure chemical ionization-mass spectrometry (APCI-MS). The authentic standards of six model compounds were used to optimize the separative conditions and to predict the chromatographic behavior of untargeted carotenoids. An information dependent acquisition (IDA) was performed with (i) enhanced-mass scan (EMS) as the survey scan, (ii) enhanced-resolution (ER) scan to obtain the exact mass of the precursor ions (16-35 ppm), and (iii) enhanced product ion (EPI) scan as dependent scan to obtain structural information. LC-DAD-multiple reaction monitoring (MRM) chromatograms were also acquired for the identification of targeted carotenoids occurring at low concentrations; for the first time, the relative abundance between the MRM transitions (ion ratio) was used as an extra tool for the MS distinction of structural isomers and the related families of geometrical isomers. The whole analytical strategy was high-throughput, because a great number of experimental data could be acquired with few analytical steps, and cost-effective, because only few standards were used; when applied to characterize some tomato varieties ('Tangerine', 'Pachino', 'Datterino', and 'Camone') and passata of 'San Marzano' tomatoes, our method succeeded in identifying up to 44 carotenoids in the 'Tangerine'" variety.

  1. Thermally Accelerated Oxidative Degradation of Quercetin Using Continuous Flow Kinetic Electrospray-Ion Trap-Time of Flight Mass Spectrometry

    NASA Astrophysics Data System (ADS)

    Barnes, Jeremy S.; Foss, Frank W.; Schug, Kevin A.

    2013-10-01

    Thermally accelerated oxidative degradation of aqueous quercetin at pH 5.9 and 7.4 was kinetically measured using an in-house built online continuous flow device made of concentric capillary tubes, modified to fit to the inlet of an electrospray ionization-ion trap-time-of-flight-mass spectrometer (ESI-IT-TOF-MS). Time-resolved mass spectral measurements ranging from 2 to 21 min were performed in the negative mode to track intermediate degradation products and to evaluate the degradation rate of the deprotonated quercetin ion, [Q-H]-. Upon heating solutions in the presence of dissolved oxygen, degradation of [Q-H]- was observed and was accelerated by an increase in pH and temperature. Regardless of the condition, the same degradation pathways were observed. Degradation mechanisms and structures were determined using higher order tandem mass spectrometry (up to MS3) and high mass accuracy. The observed degradation mechanisms included oxidation, hydroxylation, and ring-cleavage by nucleophilic attack. A chalcan-trione structure formed by C-ring opening after hydroxylation at C2 was believed to be a precursor for other degradation products, formed by hydroxylation at the C2, C3, and C4 carbons from attack by nucleophilic species. This resulted in A-type and B-type ions after cross-ring cleavage of the C-ring. Based on time of appearance and signal intensity, nucleophilic attack at C3 was the preferred degradation pathway, which generated 2,4,6-trihydroxymandelate and 2,4,6-trihydroxyphenylglyoxylate ions. Overall, 23 quercetin-related ions were observed.

  2. Quantitation of isobaric phosphatidylcholine species in human plasma using a hybrid quadrupole linear ion-trap mass spectrometer.

    PubMed

    Zacek, Petr; Bukowski, Michael; Rosenberger, Thad A; Picklo, Matthew

    2016-12-01

    Phosphatidylcholine (PC) species in human plasma are used as biomarkers of disease. PC biomarkers are often limited by the inability to separate isobaric PCs. In this work, we developed a targeted shotgun approach for analysis of isobaric and isomeric PCs. This approach is comprised of two MS methods: a precursor ion scanning (PIS) of mass m/z 184 in positive mode (PIS m/z +184) and MS(3) fragmentation in negative mode, both performed on the same instrument, a hybrid triple quadrupole ion-trap mass spectrometer. The MS(3) experiment identified the FA composition and the relative abundance of isobaric and sn-1, sn-2 positional isomeric PC species, which were subsequently combined with absolute quantitative data obtained by PIS m/z +184 scan. This approach was applied to the analysis of a National Institute of Standards and Technology human blood plasma standard reference material (SRM 1950). We quantified more than 70 PCs and confirmed that a majority are present in isobaric and isomeric mixtures. The FA content determined by this method was comparable to that obtained using GC with flame ionization detection, supporting the quantitative nature of this MS method. This methodology will provide more in-depth biomarker information for clinical and mechanistic studies.

  3. Quantitation of isobaric phosphatidylcholine species in human plasma using a hybrid quadrupole linear ion-trap mass spectrometer[S

    PubMed Central

    Zacek, Petr; Bukowski, Michael; Rosenberger, Thad A.; Picklo, Matthew

    2016-01-01

    Phosphatidylcholine (PC) species in human plasma are used as biomarkers of disease. PC biomarkers are often limited by the inability to separate isobaric PCs. In this work, we developed a targeted shotgun approach for analysis of isobaric and isomeric PCs. This approach is comprised of two MS methods: a precursor ion scanning (PIS) of mass m/z 184 in positive mode (PIS m/z +184) and MS3 fragmentation in negative mode, both performed on the same instrument, a hybrid triple quadrupole ion-trap mass spectrometer. The MS3 experiment identified the FA composition and the relative abundance of isobaric and sn-1, sn-2 positional isomeric PC species, which were subsequently combined with absolute quantitative data obtained by PIS m/z +184 scan. This approach was applied to the analysis of a National Institute of Standards and Technology human blood plasma standard reference material (SRM 1950). We quantified more than 70 PCs and confirmed that a majority are present in isobaric and isomeric mixtures. The FA content determined by this method was comparable to that obtained using GC with flame ionization detection, supporting the quantitative nature of this MS method. This methodology will provide more in-depth biomarker information for clinical and mechanistic studies. PMID:27688258

  4. Structural Characterization of Unsaturated Glycerophospholipids by Multiple-stage Linear Ion-trap Mass Spectrometry with Electrospray Ionization

    PubMed Central

    Hsu, Fong-Fu; Turk, John

    2008-01-01

    Structural elucidation of glycerophospholipids (GPLs), including the polar head group, the position of double bond(s) along the fatty acyl substituents, and the positions of acyl groups on the glycerol backbone using multiple-stage liner ion-trap (LIT) mass spectrometric approach is described in this paper. While the product-ion spectra from MSn (n = 2, 3) on the [M + Li]+ or [M − H + 2Li]+ ions of GPL are readily applicable for discerning the phospholipid classes and for identifying and locating the fatty acid substituents on the glycerol backbone, the structural information from further dissociation of the dilithiated fatty acid cations produced from MSn (n = 3,4) on the [M − H + 2Li]+ ion of GPLs, as well as from further dissociation of the monolithiated fragment ion that bears the unsaturated fatty acid moiety produced from subsequent MSn (n= 3,4) on the [M + Li]+ ions of GPLs affords assignment of the position of double bond(s) along the fatty acyl groups. The application of the present method in the structural characterization of GPL molecules from the lipid extracts of biological origin, including mixtures of phosphatidylglycerol and of phosphatidylserine without prior chromatographic separation, is also demonstrated. Since lithiated molecular species of GPL are readily formed by ESI, this multiple-stage LIT mass spectrometric approach provides a direct means for the near-complete structural characterization of all the GPLs, including the molecules in the lysophospholipid and plasmalogen subclasses. PMID:18771936

  5. Using Metal Complex Ion-Molecule Reactions in a Miniature Rectilinear Ion Trap Mass Spectrometer to Detect Chemical Warfare Agents

    NASA Astrophysics Data System (ADS)

    Graichen, Adam M.; Vachet, Richard W.

    2013-06-01

    The gas-phase reactions of a series of coordinatively unsaturated [Ni(L)n]y+ complexes, where L is a nitrogen-containing ligand, with chemical warfare agent (CWA) simulants in a miniature rectilinear ion trap mass spectrometer were investigated as part of a new approach to detect CWAs. Results show that upon entering the vacuum system via a poly(dimethylsiloxane) (PDMS) membrane introduction, low concentrations of several CWA simulants, including dipropyl sulfide (simulant for mustard gas), acetonitrile (simulant for the nerve agent tabun), and diethyl phosphite (simulant for nerve agents sarin, soman, tabun, and VX), can react with metal complex ions generated by electrospray ionization (ESI), thereby providing a sensitive means of detecting these compounds. The [Ni(L)n]2+ complexes are found to be particularly reactive with the simulants of mustard gas and tabun, allowing their detection at low parts-per-billion (ppb) levels. These detection limits are well below reported exposure limits for these CWAs, which indicates the applicability of this new approach, and are about two orders of magnitude lower than electron ionization detection limits on the same mass spectrometer. The use of coordinatively unsaturated metal complexes as reagent ions offers the possibility of further tuning the ion-molecule chemistry so that desired compounds can be detected selectively or at even lower concentrations.

  6. Averaging peak-to-peak voltage detector for absolute mass determination of single particles with quadrupole ion traps

    SciTech Connect

    Peng, W.-P.; Lee, Yuan T.; Ting, Joseph W.; Chang, H.-C.

    2005-02-01

    A sine wave that controls a quadrupole ion trap is generated from a low voltage source, boosted to high voltage through a transformer. Since not even the best transformers can keep a flat amplitude response with respect to frequency, knowing the accurate peak-to-peak value of the sine wave is paramount when the frequency is varied. We have developed an averaging peak-to-peak voltage detector for such measurements and demonstrated that the device is an essential tool to make possible high-precision mass determination of single charged microparticles with masses greater than 1x10{sup 11} u. Tests of the detector with sine waves from a FLUKE 5720A standard source in the neighborhood of 1400 V{sub pp} and frequencies ranging from 100 to 700 Hz showed a measurement accuracy better than 10 ppm. The detector settled within 5 s after each reset to 5 digits of DVM rock-steady reading, and the calibration against the same source after 3 weeks of continuous use of the circuit produced a mere overall 1 ppm difference.

  7. Using metal complex ion-molecule reactions in a miniature rectilinear ion trap mass spectrometer to detect chemical warfare agents.

    PubMed

    Graichen, Adam M; Vachet, Richard W

    2013-06-01

    The gas-phase reactions of a series of coordinatively unsaturated [Ni(L)n](y+) complexes, where L is a nitrogen-containing ligand, with chemical warfare agent (CWA) simulants in a miniature rectilinear ion trap mass spectrometer were investigated as part of a new approach to detect CWAs. Results show that upon entering the vacuum system via a poly(dimethylsiloxane) (PDMS) membrane introduction, low concentrations of several CWA simulants, including dipropyl sulfide (simulant for mustard gas), acetonitrile (simulant for the nerve agent tabun), and diethyl phosphite (simulant for nerve agents sarin, soman, tabun, and VX), can react with metal complex ions generated by electrospray ionization (ESI), thereby providing a sensitive means of detecting these compounds. The [Ni(L)n](2+) complexes are found to be particularly reactive with the simulants of mustard gas and tabun, allowing their detection at low parts-per-billion (ppb) levels. These detection limits are well below reported exposure limits for these CWAs, which indicates the applicability of this new approach, and are about two orders of magnitude lower than electron ionization detection limits on the same mass spectrometer. The use of coordinatively unsaturated metal complexes as reagent ions offers the possibility of further tuning the ion-molecule chemistry so that desired compounds can be detected selectively or at even lower concentrations.

  8. Collision induced dissociation of protonated N-nitrosodimethylamine by ion trap mass spectrometry: Ultimate carcinogens in gas phase

    NASA Astrophysics Data System (ADS)

    Kulikova, Natalia; Baker, Michael; Gabryelski, Wojciech

    2009-12-01

    Collision induced dissociation of protonated N-nitrosodimethylamine (NDMA) and isotopically labeled N-nitrosodimethyl-d6-amine (NDMA-d6) was investigated by sequential ion trap mass spectrometry to establish mechanisms of gas phase reactions leading to intriguing products of this potent carcinogen. The fragmentation of (NDMA + H+) occurs via two dissociation pathways. In the alkylation pathway, homolytic cleavage of the N-O bond of N-dimethyl, N'-hydroxydiazenium ion generates N-dimethyldiazenium distonic ion which reacts further by a CH3 radical loss to form methanediazonium ion. Both methanediazonium ion and its precursor are involved in ion/molecule reactions. Methanediazonium ion showed to be capable of methylating water and methanol molecules in the gas phase of the ion trap and N-dimethyldiazenium distonic ion showed to abstract a hydrogen atom from a solvent molecule. In the denitrosation pathway, a tautomerization of N-dimethyl, N'-hydroxydiazenium ion to N-nitrosodimethylammonium intermediate ion results in radical cleavage of the N-N bond of the intermediate ion to form N-dimethylaminium radical cation which reacts further through [alpha]-cleavage to generate N-methylmethylenimmonium ion. Although the reactions of NDMA in the gas phase are different to those for enzymatic conversion of NDMA in biological systems, each activation method generates the same products. We will show that collision induced dissociation of N-nitrosodiethylamine (NDEA) and N-nitrosodipropylamine (NDPA) is also a feasible approach to gain information on formation, stability, and reactivity of alkylating agents originating from NDEA and NDPA. Investigating such biologically relevant, but highly reactive intermediates in the condensed phase is hampered by the short life-times of these transient species.

  9. Simultaneous determination of triprolidine and pseudoephedrine in human plasma by liquid chromatography-ion trap mass spectrometry.

    PubMed

    Shakya, Ashok K; Arafat, Tawfiq A; Abuawwad, Ahmad N; Melhim, Munther; Al-Ghani, Jafar; Yacoub, Mahmoud J

    2009-12-15

    A highly efficient, selective and specific method for simultaneous quantitation of triprolidine and pseudoephedrine in human plasma by liquid chromatography-ion trap-tandem mass spectrometry coupled with electro spray ionization (LC-ESI-ion trap-tandem MS) has been validated and successfully applied to a clinical pharmacokinetic study. Both targeted compounds together with the internal standard (gabapentin) were extracted from the plasma by direct protein precipitation. Chromatographic separation was achieved on a C(18) ACE((R)) column (50.0mmx2.1mm, 5mum, Advance Chromatography Technologies, Aberdeen, UK), using an isocratic mobile phase, consisting of water, methanol and formic acid (55:45:0.5, v/v/v), at a flow-rate of 0.3mL/min. The transition monitored (positive mode) was m/z 279.1-->m/z 208.1 for triprolidine, m/z 165.9-->m/z 148.0 for pseudoephedrine and m/z 172.0-->m/z 154.0 for gabapentin (IS). This method had a chromatographic run time of 5.0min and a linear calibration curves ranged from 0.2 to 20.0ng/mL for triprolidine and 5.0-500.0ng/mL for pseudoephedrine. The within- and between-batch accuracy and precision (expressed as coefficient of variation, %C.V.) evaluated at four quality control levels were within 94.3-106.3% and 1.0-9.6% respectively. The mean recoveries of triprolidine, pseudoephedrine and gabapentin were 93.6, 76.3 and 82.0% respectively. Stability of triprolidine and pseudoephedrine was assessed under different storage conditions. The validated method was successfully employed for the bioequivalence study of triprolidine and pseudoephedrine formulation in twenty six volunteers under fasting conditions.

  10. Liquid chromatography-electrospray quadrupole ion-trap mass spectrometry of nine pesticides in fruits.

    PubMed

    Soler, Carla; Mañes, Jordi; Picó, Yolanda

    2004-09-03

    A liquid chromatographic method, with electrospray ionization tandem mass spectrometry (LC-ESI-MS-MS), has been developed for determining acrinathrin, carbosulfan, cyproconazole, lambda-cyhalothrin, kresoxim methyl, pyrifenox, pyriproxyfen, propanil, and tebufenpyrad in fruits. The ions prominent in ESI spectra were [M + H]+ and [M + Na]+. In the mass analyzer, collision-induced dissociation fragmentation involved common pathways, for example, product ions of [M + H]+ resulted from the cleavage of the carbamic group or an oxygen bound. The utility of the method is demonstrated by the analysis of crude extracts obtained by matrix solid-phase dispersion (MSPD) using C18 as dispersant and dichloromethane-methanol as eluent, and by solid-liquid extraction (SLE) with ethyl acetate and anhydrous sodium sulfate. Mean recoveries ranged from 51.5 to 108%, with relative standard deviations <16%, were obtained for MSPD and from 59 to 101% with relative standard deviation <17% for SLE. However, for most compounds, limits of quantification are better by SLE (0.01-4.4 mg kg(-1)) than by MSPD (0.05-2 mg kg(-1)). During the validation process, the procedure was tested for matrix effects, blanks and stability of the system. Considerably matrix effects in the ESI ionization process were detected by comparing standard calibration, and matrix calibration. Because of this, detected residues were quantified from interpolation against calibration data obtained using matrix matched standards.

  11. Evaluating Multiplexed Quantitative Phosphopeptide Analysis on a Hybrid Quadrupole Mass Filter/Linear Ion Trap/Orbitrap Mass Spectrometer

    PubMed Central

    2015-01-01

    As a driver for many biological processes, phosphorylation remains an area of intense research interest. Advances in multiplexed quantitation utilizing isobaric tags (e.g., TMT and iTRAQ) have the potential to create a new paradigm in quantitative proteomics. New instrumentation and software are propelling these multiplexed workflows forward, which results in more accurate, sensitive, and reproducible quantitation across tens of thousands of phosphopeptides. This study assesses the performance of multiplexed quantitative phosphoproteomics on the Orbitrap Fusion mass spectrometer. Utilizing a two-phosphoproteome model of precursor ion interference, we assessed the accuracy of phosphopeptide quantitation across a variety of experimental approaches. These methods included the use of synchronous precursor selection (SPS) to enhance TMT reporter ion intensity and accuracy. We found that (i) ratio distortion remained a problem for phosphopeptide analysis in multiplexed quantitative workflows, (ii) ratio distortion can be overcome by the use of an SPS-MS3 scan, (iii) interfering ions generally possessed a different charge state than the target precursor, and (iv) selecting only the phosphate neutral loss peak (single notch) for the MS3 scan still provided accurate ratio measurements. Remarkably, these data suggest that the underlying cause of interference may not be due to coeluting and cofragmented peptides but instead from consistent, low level background fragmentation. Finally, as a proof-of-concept 10-plex experiment, we compared phosphopeptide levels from five murine brains to five livers. In total, the SPS-MS3 method quantified 38 247 phosphopeptides, corresponding to 11 000 phosphorylation sites. With 10 measurements recorded for each phosphopeptide, this equates to more than 628 000 binary comparisons collected in less than 48 h. PMID:25521595

  12. Wavelet-based method for time-domain noise analysis and reduction in a frequency-scan ion trap mass spectrometer.

    PubMed

    Chou, Szu-Wei; Shiu, Guo-Rung; Chang, Huan-Cheng; Peng, Wen-Ping

    2012-11-01

    We adopt an orthogonal wavelet packet decomposition (OWPD) filtering approach to cancel harmonic interference noises arising from an AC power source in time domain and remove the resulting rf voltage interference noise from the mass spectra acquired by using a charge detection frequency-scan quadrupole ion trap mass spectrometer. With the use of a phase lock resampling technique, the transform coefficients of the rf interference in signals become a constant, exhibiting a shift of the baseline in different rf phases. The rf interference is therefore removable by shifting the baselines back to zero in OWPD coefficients. The approach successfully reduces the time-domain background noise from 1367 electrons (rms) to 408 electrons (rms) (an improvement of 70 %) and removes the high frequency noise components in the charge detection ion trap mass spectrometry. Unlike other smoothing or averaging methods commonly used in the mass-to-charge (m/Ze) domain, our approach does not cause any distortion of original signals.

  13. POLAR ORGANIC CHEMICAL INTEGRATIVE SAMPLING AND LIQUID CHROMATOGRAPHY-ELECTROSPRAY/ION-TRAP MASS SPECTROMETRY FOR ASSESSING SELECTED PRESCRIPTION AND ILLICIT DRUGS IN TREATED SEWAGE EFFLUENTS

    EPA Science Inventory

    The purpose of the research presented in this paper is two-fold: (1) to demonstrate the 4 coupling of two state-of-the-art techniques: a time-weighted polar organic integrative sampler (POCIS) and micro-liquid chromatography-electrospray/ion trap mass spectrometry (u-LC-6 ES/ITMS...

  14. POLAR ORGANIC CHEMICAL INTEGRATIVE SAMPLING AND LIQUID CHROMATOGRAPHY-ELECTROSPRAY/ION-TRAP MASS SPECTROMETRY FOR ASSESSING SELECTED PRESCRIPTION AND ILLICIT DRUGS IN TREATED SEWAGE EFFLUENTS

    EPA Science Inventory

    The purpose of the research presented in this paper is two-fold: (1) to demonstrate the 4 coupling of two state-of-the-art techniques: a time-weighted polar organic integrative sampler (POCIS) and micro-liquid chromatography-electrospray/ion trap mass spectrometry (u-LC-6 ES/ITMS...

  15. Solvent-driven electron trapping and mass transport in reduced graphites to access perfect graphene

    PubMed Central

    Vecera, Philipp; Holzwarth, Johannes; Edelthalhammer, Konstantin F.; Mundloch, Udo; Peterlik, Herwig; Hauke, Frank; Hirsch, Andreas

    2016-01-01

    Herein, we report on a significant discovery, namely, the quantitative discharging of reduced graphite forms, such as graphite intercalation compounds, graphenide dispersions and graphenides deposited on surfaces with the simple solvent benzonitrile. Because of its comparatively low reduction potential, benzonitrile is reduced during this process to the radical anion, which exhibits a red colour and serves as a reporter molecule for the quantitative determination of negative charges on the carbon sheets. Moreover, this discovery reveals a very fundamental physical–chemical phenomenon, namely a quantitative solvent reduction induced and electrostatically driven mass transport of K+ ions from the graphite intercalation compounds into the liquid. The simple treatment of dispersed graphenides suspended on silica substrates with benzonitrile leads to the clean conversion to graphene. This unprecedented procedure represents a rather mild, scalable and inexpensive method for graphene production surpassing previous wet-chemical approaches. PMID:27506380

  16. Solvent-driven electron trapping and mass transport in reduced graphites to access perfect graphene

    NASA Astrophysics Data System (ADS)

    Vecera, Philipp; Holzwarth, Johannes; Edelthalhammer, Konstantin F.; Mundloch, Udo; Peterlik, Herwig; Hauke, Frank; Hirsch, Andreas

    2016-08-01

    Herein, we report on a significant discovery, namely, the quantitative discharging of reduced graphite forms, such as graphite intercalation compounds, graphenide dispersions and graphenides deposited on surfaces with the simple solvent benzonitrile. Because of its comparatively low reduction potential, benzonitrile is reduced during this process to the radical anion, which exhibits a red colour and serves as a reporter molecule for the quantitative determination of negative charges on the carbon sheets. Moreover, this discovery reveals a very fundamental physical-chemical phenomenon, namely a quantitative solvent reduction induced and electrostatically driven mass transport of K+ ions from the graphite intercalation compounds into the liquid. The simple treatment of dispersed graphenides suspended on silica substrates with benzonitrile leads to the clean conversion to graphene. This unprecedented procedure represents a rather mild, scalable and inexpensive method for graphene production surpassing previous wet-chemical approaches.

  17. High-precision isotopic analysis of palmitoylcarnitine by liquid chromatography/electrospray ionization ion-trap tandem mass spectrometry.

    PubMed

    Guo, ZengKui; Yarasheski, Kevin; Jensen, Michael D

    2006-01-01

    Single quadrupole gas chromatography/mass spectrometry (GC/MS) has been widely used for isotopic analysis in metabolic investigations using stable isotopes as tracers. However, its inherent shortcomings prohibit it from broader use, including low isotopic precision and the need for chemical derivatization of the analyte. In order to improve isotopic detection power, liquid chromatography/electrospray ionization ion-trap tandem mass spectrometry (LC/ESI-itMS2) has been evaluated for its isotopic precision and chemical sensitivity for the analysis of [13C]palmitoylcarnitine. Over the enrichment range of 0.4-10 MPE (molar % excess), the isotopic response of LC/ESI-itMS2 to [13C]palmitoylcarnitine was linear (r = 1.00) and the average isotopic precision (standard deviation, SD) was 0.11 MPE with an average coefficient of variation (CV) of 5.6%. At the lower end of isotopic enrichments (0.4-0.9 MPE), the isotopic precision was 0.05 MPE (CV = 8%). Routine analysis of rat skeletal muscle [13C4]palmitoylcarnitine demonstrated an isotopic precision of 0.03 MPE for gastrocnemius (n = 16) and of 0.02 MPE for tibialis anterior (n = 16). The high precision enabled the detection of a small (0.08 MPE) but significant (P = 0.01) difference in [13C4]palmitoylcarnitine enrichments between the two muscles, 0.51 MPE (CV = 5.8%) and 0.43 MPE (CV = 4.6%), respectively. Therefore, the system demonstrated an isotopic lower detection limit (LDL) of < or =0.1 MPE (2 x SD) that has been impossible previously with other organic mass spectrometry instruments. LC/ESI-itMS2 systems have the potential to advance metabolic investigations using stable isotopes to a new level by significantly increasing the isotopic solving power.

  18. The Standard Model Results from a Scheme to Protect the Mass of the Scalar Bosons

    NASA Astrophysics Data System (ADS)

    Chaves, M.

    2005-08-01

    The masses of phenomenological scalar bosons are not protected against large contributions due to quantum loops involving the hypothetical very high energy theory that we assume is the true theory. Here I present a generalization of Yang-Mills theories that treats vector and scalar bosons on the same footing and results in Ward identities and current conservations that protect the masses of the scalars. It is remarkable that that the Standard Model obtains immediately upon choosing an appropriate gauge symmetry and allowing for one scalar field and one vector field to possess large vacuum expectation values. The Standard Model then appears as the unitary gauge of the chosen gauge symmetry. Due to the vectorial VEV there is a small breaking of the Lorentz invariance.

  19. Liquid chromatography tandem mass spectrometric quantitation of sulfamethazine and its metabolites: direct analysis of swine urine by triple quadrupole and by ion trap mass spectrometry.

    PubMed

    Bartolucci, G; Pieraccini, G; Villanelli, F; Moneti, G; Triolo, A

    2000-01-01

    This work describes a new method for the quantitation of trace amounts of sulfamethazine (SMZ) and its main metabolite, N4-acetylsulfamethazine (Ac-SMZ), in swine urine, using high-performance liquid chromatography (HPLC) tandem mass spectrometric analysis of crude urine after addition of internal standard and simple dilution with water. The aim was to determine whether residues of this sulfamidic drug, normally administered to swine in order to prevent infectious diseases, were present in urine at levels lower than those permitted by regulatory authorities before human consumption (EU Project SMT, contract number CT 96-2092). A 10 microL volume of diluted urine was injected into a very short, narrow-bore chromatographic column (Zorbax SB-C18 2.1 i. d. x30 mm length, 3.5 microm pore size). Elution of the analytes of interest was achieved in less than seven minutes using a rapid gradient (from 20 to 80% methanol in 3 minutes). Either a PE Sciex API 365 triple quadrupole (QqQ), operated in the selected reaction monitoring (SRM) mode, or a Finnigan LCQ ion trap (IT) mass spectrometer, operated in narrow-range product ion scan, was used as the final detector. Electrospray (ESI) was used as the ionization technique. A comparison of the two tandem mass spectrometers was performed by analyzing the same set of test samples, at three concentration levels, on three different days. Linearity of responses of the calibration standards, intra- and inter-assay precision of the samples, specificity and limits of detection were evaluated for both systems. Both the QqQ and the IT instrument was suitable for rapid, sensitive and specific determination of the analytes, although the overall performance of the QqQ was slightly superior in terms of linearity, precision and sensitivity.

  20. Appropriate choice of collision-induced dissociation energy for qualitative analysis of notoginsenosides based on liquid chromatography hybrid ion trap time-of-flight mass spectrometry.

    PubMed

    Wang, Guang-Ji; Fu, Han-Xu; Xiao, Jing-Cheng; Ye, Wei; Rao, Tai; Shao, Yu-Hao; Kang, Dian; Xie, Lin; Liang, Yan

    2016-04-01

    Liquid chromatography hybrid ion trap/time-of-flight mass spectrometry possessesd both the MS(n) ability of ion trap and the excellent resolution of a time-of-flight, and has been widely used to identify drug metabolites and determine trace multi-components for in natural products. Collision energy, one of the most important factors in acquiring MS(n) information, could be set freely in the range of 10%-400%. Herein, notoginsenosides were chosen as model compounds to build a novel methodology for the collision energy optimization. Firstly, the fragmental patterns of the representatives for the authentic standards of protopanaxadiol-type and protopanaxatriol-type notoginsenosides authentic standards were obtained based on accurate MS(2) and MS(3) measurements via liquid chromatography hybrid ion trap/time-of-flight mass spectrometry. Then the extracted ion chromatograms of characteristic product ions of notoginsenosides in Panax Notoginseng Extract, which were produced under a series of collision energies and, were compared to screen out the optimum collision energies values for MS(2) and MS(3). The results demonstrated that the qualitative capability of liquid chromatography hybrid ion trap/time-of-flight mass spectrometry was greatly influenced by collision energies, and 50% of MS(2) collision energy was found to produce the highest collision-induced dissociation efficiency for notoginsenosides. BesidesAddtionally, the highest collision-induced dissociation efficiency appeared when the collision energy was set at 75% in the MS(3) stage.

  1. Identifying the site of spin-trapping in proteins by a combination of liquid chromatography, ELISA and off-line tandem mass spectrometry

    PubMed Central

    Lardinois, Olivier M.; Detweiler, Charles D.; Tomer, Kenneth B.; Mason, Ronald P.; Deterding, Leesa J.

    2008-01-01

    An off-line mass spectrometry method that combines immuno-spin trapping and chromatographic procedures has been developed for selective detection of the nitrone spin trap 5,5-dimethyl-1-pyrroline-N-oxide (DMPO) covalently attached to proteins, an attachment which occurs only subsequent to DMPO trapping of free radicals. In this technique, the protein-DMPO nitrone adducts are digested to peptides with proteolytic agents, peptides from the enzymatic digest are separated by HPLC, and enzyme-linked immunosorbent assays (ELISA) using polyclonal anti-DMPO nitrone antiserum are used to detect the eluted HPLC fractions that contain DMPO nitrone adducts. The fractions showing positive ELISA signals are then concentrated and characterized by tandem mass spectrometry (MS/MS). This method, which constitutes the first liquid chromatography-ELISA-mass spectrometry (LC-ELISA-MS)-based strategy for selective identification of DMPO-trapped protein residues in complex peptide mixtures, facilitates location and preparative fractionation of DMPO nitrone adducts for further structural characterization. The strategy is demonstrated for human hemoglobin, horse heart myoglobin and sperm whale myoglobin, three globin proteins known to form DMPO-trappable protein radicals upon treatment with H2O2. The results demonstrate the power of the new experimental strategy to select DMPO-labeled peptides and identify sites of DMPO covalent attachments. PMID:18160050

  2. Application of Liquid Chromatography/Ion Trap Mass Spectrometry Technique to Determine Ergot Alkaloids in Grain Products

    PubMed Central

    Szymczyk, Krystyna; Jędrzejczak, Renata; Roszko, Marek

    2015-01-01

    Summary A liquid chromatography/ion trap mass spectrometry-based method to determine six ergot alkaloids and their isomers is presented. The samples were cleaned on neutral alumina-based solid-phase extraction cartridges. The following method parameters were obtained (depending on the analyte and spiking level): method recovery from 63.0 to 104.6%, relative standard deviation below 18%, linear range from 1 to 325 µg/kg, linear correlation coefficient not less than 0.98. The developed analytical procedure was applied to determine the levels of ergot alkaloids in 65 samples of selected rye-based food products (flour – 34 samples, bran – 12 samples, rye – 18 samples, flakes – 1 sample). Measurable levels of alkaloids were found in majority of the analysed samples, particularly in rye flour. Additionally, alkaloids were determined in ergot sclerotia isolated from rye grains. Total content was nearly 0.01% (97.9 mg/kg). However, the alkaloid profile was dominated by ergocristine at 45.6% (44.7 mg/kg), an alkaloid not commonly found in the tested food products. Ergocorninine at 0.2% (0.2 mg/kg) was the least abundant alkaloid. PMID:27904328

  3. Evaluation of the site(s) of glycation in human proinsulin by ion-trap LCQ electrospray ionization mass spectrometry.

    PubMed

    McKillop, Aine M; Meade, Angela; Flatt, Peter R; O'Harte, Finbarr P M

    2003-05-15

    The glycation of beta cell proteins is known to occur under hyperglycemic states. The site(s) of glycation in human proinsulin was investigated following exposure to a hyperglycemic environment under reducing conditions in vitro. Proinsulin and glycated proinsulin were separated by reversed-phase high-performance liquid chromatography (RP-HPLC) and identified using LCQ ion-trap electrospray ionization mass spectrometry. This revealed a major peak (>70% total) of monoglycated proinsulin (M(r) 9552.2 Da), a second peak (approximately 27%) of nonglycated proinsulin (M(r) 9389.8 Da), and a third minor peptide peak (approximately 3%) corresponding to diglycated proinsulin (M(r) 9717.9 Da). Following reduction of disulphide bridges with dithiothreitol, intact peptides were incubated with endoproteinase Glu-C to release nine daughter fragments for LC-MS analysis. This strategy revealed an N-terminal fragment of monoglycated proinsulin Phe(1)-Glu(13), which contained a single glucitol adduct (M(r) 1642.0 Da). A similar treatment of small amounts of purified diglycated proinsulin revealed a fragment with Phe(1)-Glu(13) linked by a disulphide bridge to Gln(70)-Glu(82) containing two glucitol adducts (M(r) 3292.7 Da). In summary, these studies indicate that the major site of glycation in proinsulin, like insulin, is the amino terminal Phe(1) residue. However, small amounts of diglycated proinsulin occur naturally, involving an additional site of glycation located between Gln(70) and Glu(82).

  4. Identification and quantification of active alkaloids in Catharanthus roseus by liquid chromatography-ion trap mass spectrometry.

    PubMed

    Chen, Qinhua; Zhang, Wenpeng; Zhang, Yulin; Chen, Jing; Chen, Zilin

    2013-08-15

    Catharanthus roseus is an important dicotyledonous medicinal plant that produces anticancer compounds. The active alkaloids vinblastine, vindoline, ajmalicine, catharanthine, and vinleurosine were identified by direct-injection ion trap-mass spectrometry (IT-MS) for collecting MS(1-2) spectra. The determinations of five alkaloids were accomplished by liquid chromatography (LC) with UV and MS detections. The analytes provided good signals corresponding to the protonated molecular ions [M+H](+) and product ions. The precursor ions and product ions for quantification of vinblastine, vindoline, ajmalicine, catharanthine, and vinleurosine were m/z 825→807, 457→397, 353→144, 337→144 and 809→748 by LC-IT-MS, respectively. Two methods were used to evaluate a number of validation characteristics (repeatability, LOD, calibration range, and recovery). MS provided a high selectivity and sensitivity for determination of five alkaloids in positive mode. After optimisation of the methods, separation, identification and quantification of the five components in C. roseus were comprehensively accomplished by HPLC with UV and MS detection.

  5. Structural characterization of metabolites of the X-ray contrast agent iopromide in activated sludge using ion trap mass spectrometry.

    PubMed

    Pérez, Sandra; Eichhorn, Peter; Celiz, Mary Dawn; Aga, Diana S

    2006-03-15

    Identification of degradation products of environmental contaminants is a challenging task because not only are they present in very low concentrations but they are also mixed with complex matrixes that interfere with detection. This work illustrates a simple approach using ion trap mass spectrometry combined with H/D-exchange experiments to elucidate the structures of iopromide metabolites formed during biodegradation in activated sludge. Iopromide is an X-ray contrast agent that has been detected frequently in effluents of wastewater treatment plants and in surface waters due to its persistence and high usage. Three metabolites produced by oxidation of the primary alcohols (forming carboxylates) on the side chains of iopromide were identified in a batch reactor with mixed liquor from a conventional activated sludge. Derivatization of the carboxylic acid to form a methyl ester and interpretation of the MS2 data of this derivative aided in the confirmation of the identities of these metabolites. Furthermore, one metabolite formed by dehydroxylation at the two side chains was identified in a batch reactor with mixed liquor from a nitrifying activated sludge. The MS2 fragmentation pattern of iopromide and its metabolites revealed that the iodinated ring remains intact and that minor transformations in the structure occur during biodegradation of iopromide in biological wastewater treatment plants.

  6. Action spectroscopy of SrCl{sup +} using an integrated ion trap time-of-flight mass spectrometer

    SciTech Connect

    Puri, Prateek Schowalter, Steven J.; Hudson, Eric R.; Kotochigova, Svetlana; Petrov, Alexander

    2014-07-07

    The photodissociation cross-section of SrCl{sup +} is measured in the spectral range of 36 000–46 000 cm{sup −1} using a modular time-of-flight mass spectrometer (TOF-MS). By irradiating a sample of trapped SrCl{sup +} molecular ions with a pulsed dye laser, X{sup 1}Σ{sup +} state molecular ions are electronically excited to the repulsive wall of the A{sup 1}Π state, resulting in dissociation. Using the TOF-MS, the product fragments are detected and the photodissociation cross-section is determined for a broad range of photon energies. Detailed ab initio calculations of the SrCl{sup +} molecular potentials and spectroscopic constants are also performed and are found to be in good agreement with experiment. The spectroscopic constants for SrCl{sup +} are also compared to those of another alkaline earth halogen, BaCl{sup +}, in order to highlight structural differences between the two molecular ions. This work represents the first spectroscopy and ab initio calculations of SrCl{sup +}.

  7. Analysis of 40 weight loss compounds adulterated in health supplements by liquid chromatography quadrupole linear ion trap mass spectrometry.

    PubMed

    Zeng, Yun; Xu, Yimin; Kee, Chee-Leong; Low, Min-Yong; Ge, Xiaowei

    2016-01-01

    In this study, a liquid chromatography-tandem mass spectrometry (LC-MS/MS) with scheduled multiple reaction monitoring (MRM) enhanced product ion (EPI) method was developed for simultaneous determination of 40 compounds with weight loss effect, including bisacodyl, phenolphthalein, and sibutramine and its metabolites, etc. They might be adulterated in health supplements to get prominent weight loss effect. The samples were analyzed using a Q-Trap 5500 coupled with high performance liquid chromatography (HPLC) and a CORTECS ultra performance liquid chromatography (UPLC) C18 column (100 mm x 2.1 mm x1.6 µm). Scheduled MRM was used as survey scan, MS2 spectra acquired in the EPI mode were used to perform library searching to increase the confidence of detection. Limits of detection were less than 10 ng/g for the majority of the analytes. A total of 447 weight loss products were tested in our laboratory in the past three years. Among these samples, 119 samples were found to be adulterated with one or more weight loss compounds, including sibutramine, its metabolites benzyl sibutramine and desmethyl sibutramine; phenolphthalein; bisacodyl; furosemide; liothyronine (T3); and thyroxine (T4). Copyright © 2015 John Wiley & Sons, Ltd. Copyright © 2015 John Wiley & Sons, Ltd.

  8. Headspace-trap gas chromatography-mass spectrometry for determination of sulphur mustard and related compounds in soil.

    PubMed

    Røen, Bent T; Unneberg, Erik; Tørnes, John Aa; Lundanes, Elsa

    2010-04-02

    Methods for trace determination of sulphur mustard (HD) and some related cyclic sulphur compounds in soil samples have been developed using headspace-trap in combination with gas chromatography-mass spectrometry (GC-MS). Two quite different types of soil were employed in the method optimisation (sandy loam and silty clay loam). Prior to analysis, water saturated with sodium chloride was added to the samples, at a water to soil ratio of 1:1. A detection limit of 3 ng/g was achieved for HD, while the cyclic sulphur compounds 1,4-thioxane, 1,3-dithiolane and 1,4-dithiane could be detected at 0.2-0.7 ng/g. The methods were validated in the concentration range from the limit of quantification (LOQ) to hundred times LOQ. The within assay precision at fifty times LOQ was 6.9-7.3% relative standard deviation (RSD) for determination of the cyclic sulphur compounds, and 15% RSD for determination of HD. Recoveries were in the range of 43-60% from the two soil types. As the technique requires very little sample preparation, the total time for sample handling and analysis was less than 1h. The technique was successfully employed for the determination of cyclic sulphur compounds in a sediment sample from an old dumping site for chemical munitions, known to contain HD degradation products. Copyright (c) 2010 Elsevier B.V. All rights reserved.

  9. Isolation and quantification by high-performance liquid chromatography-ion-trap mass spectrometry of androgen sulfoconjugates in human urine.

    PubMed

    Strahm, Emmanuel; Kohler, Isabelle; Rudaz, Serge; Martel, Sophie; Carrupt, Pierre-Alain; Veuthey, Jean-Luc; Saugy, Martial; Saudan, Christophe

    2008-07-04

    Together with steroid glucuronides, sulfoconjugates may be used as markers of steroid administration as well as endogenous steroid production. A fast and sensitive analytical procedure has been developed for the simultaneous separation, determination and quantification of sulfate and glucuronide derivatives of testosterone (T), epitestosterone (E), androsterone (A), etiocholanolone (Etio) and dehydroepiandrosterone (DHEA) in human urine. First, a weak anion-exchange solid-phase extraction support (SPE Oasis WAX) was used for complete and rapid separation of sulfates and glucuronides in two extracts after loading of urine sample (2 mL). Then sulfates were analyzed directly by high-performance liquid chromatography-ion-trap mass spectrometry (LC-MS/MS) with electrospray ionization in negative mode. Chromatographic separation of the targeted sulfoconjugates was achieved using a Waters XBridge C18 column (150 mm x 4.6 mm I.D., 5 microm) with gradient elution. Assay validation demonstrated good performance for instance for T sulfate (TS) and E sulfate (ES) in terms of trueness (89-107%), repeatability (3.4-22%) and intermediate precision (5.8-22%) over the range of 2-200 ng/mL (corresponding to 1.5-147 ng/mL as free steroids). Results obtained on biological samples demonstrated the suitability of this analytical strategy for direct measurement of androgen sulfoconjugates and glucuroconjugates in human urine.

  10. Detection of cw-related species in complex aerosol particles deposited on surfaces with an ion trap-based aerosol mass spectrometer

    SciTech Connect

    Harris, William A; Reilly, Pete; Whitten, William B

    2007-01-01

    A new type of aerosol mass spectrometer was developed by minimal modification of an existing commercial ion trap to analyze the semivolatile components of aerosols in real time. An aerodynamic lens-based inlet system created a well-collimated particle beam that impacted into the heated ionization volume of the commercial ion trap mass spectrometer. The semivolatile components of the aerosols were thermally vaporized and ionized by electron impact or chemical ionization in the source. The nascent ions were extracted and injected into the ion trap for mass analysis. The utility of this instrument was demonstrated by identifying semivolatile analytes in complex aerosols. This study is part of an ongoing effort to develop methods for identifying chemical species related to CW agent exposure. Our efforts focused on detection of CW-related species doped on omnipresent aerosols such as house dust particles vacuumed from various surfaces found in any office building. The doped aerosols were sampled directly into the inlet of our mass spectrometer from the vacuumed particle stream. The semivolatile analytes were deposited on house dust and identified by positive ion chemical ionization mass spectrometry up to 2.5 h after deposition. Our results suggest that the observed semivolatile species may have been chemisorbed on some of the particle surfaces in submonolayer concentrations and may remain hours after deposition. This research suggests that identification of trace CW agent-related species should be feasible by this technique.

  11. Identification of new oxycodone metabolites in human urine by capillary electrophoresis-multiple-stage ion-trap mass spectrometry.

    PubMed

    Baldacci, A; Caslavska, J; Wey, A B; Thormann, W

    2004-10-08

    Capillary electrophoresis-electrospray ionization multiple-stage ion-trap mass spectrometry (CE-MSn) and computer simulation of fragmentation are demonstrated to be effective tools to detect and identify phase I and phase II metabolites of oxycodone (OCOD) in human urine. OCOD is a strong analgesic used for the management of moderate to severe mainly postoperative or cancer-related pain whose metabolism in man is largely unknown. Using an aqueous pH 9 ammonium acetate buffer and CE-MSn (n < or = 5), OCOD and its phase I metabolites produced by O-demethylation, N-demethylation, 6-ketoreduction and N-oxidation (such as oxymorphone, noroxycodone, noroxymorphone, 6-oxycodol, nor-6-oxycodol, oxycodone-N-oxide and 6-oxycodol-N-oxide) and phase II conjugates with glucuronic acid of several of these compounds could be detected in alkaline solid-phase extracts of a patient urine that was collected during a pharmacotherapy episode with daily ingestion of 240-320 mg of OCOD chloride. The data for three known OCOD metabolites for which the standards had to be synthesized in-house, 6-oxycodol, nor-6-oxycodol and oxycodone-N-oxide, were employed to identify two new metabolites, the N-oxidized derivative of 6-oxycodol and an O-glucuronide of this compound. CE-MSn and computer simulation of fragmentation also led to the identification of the N-glucuronide of noroxymorphone, another novel OCOD metabolite for which no standard compound or mass spectra library data were available.

  12. Identification of Carcinogen DNA Adducts in Human Saliva by Linear Quadrupole Ion Trap/Multistage Tandem Mass Spectrometry

    PubMed Central

    Bessette, Erin E.; Spivack, Simon D.; Goodenough, Angela K.; Wang, Tao; Pinto, Shailesh; Kadlubar, Fred F.; Turesky, Robert J.

    2010-01-01

    DNA adducts of carcinogens derived from tobacco smoke and cooked meat were identified, by liquid chromatography-electrospray ionization/multi-stage tandem mass spectrometry (LC-ESI/MS/MSn), in saliva samples from 37 human volunteers on unrestricted diets. The N-(deoxyguanosin-8-yl) (dG-C8) adducts of the heterocyclic aromatic amines 2-amino-1-methyl-6-phenylimidazo[4,5-b]pyridine (PhIP); 2-amino-9H-pyrido[2,3-b]indole (AαC); 2-amino-3,8-dimethylmidazo[4,5-f]quinoxaline (MeIQx); and the aromatic amine, 4-aminobiphenyl (4-ABP) were characterized and quantified, by LC-ESI/MS/MSn, employing consecutive reaction monitoring at the MS3 scan stage mode with a linear quadrupole ion trap (LIT) mass spectrometer (MS). DNA adducts of PhIP were found most frequently: dG-C8-PhIP was detected in saliva samples from 13 of 29 ever-smokers and in saliva samples from 2 of 8 never-smokers. dG-C8-AαC and dG-C8-MeIQx were identified solely in saliva samples of 3 current smokers, and dG-C8-4-ABP was detected in saliva from 2 current-smokers. The levels of these different adducts ranged from 1 to 9 adducts per 108 DNA bases. These findings demonstrate that PhIP is a significant DNA-damaging agent in humans. Saliva appears to be a promising biological fluid in which to assay DNA adducts of tobacco and dietary carcinogens, by selective LIT MS techniques. PMID:20443584

  13. Comprehensive Lipidome Analysis by Shotgun Lipidomics on a Hybrid Quadrupole-Orbitrap-Linear Ion Trap Mass Spectrometer

    NASA Astrophysics Data System (ADS)

    Almeida, Reinaldo; Pauling, Josch Konstantin; Sokol, Elena; Hannibal-Bach, Hans Kristian; Ejsing, Christer S.

    2015-01-01

    Here we report on the application of a novel shotgun lipidomics platform featuring an Orbitrap Fusion mass spectrometer equipped with an automated nanoelectrospray ion source. To assess the performance of the platform for in-depth lipidome analysis, we evaluated various instrument parameters, including its high resolution power unsurpassed by any other contemporary Orbitrap instrumentation, its dynamic quantification range and its efficacy for in-depth structural characterization of molecular lipid species by quadrupole-based higher-energy collisional dissociation (HCD), and ion trap-based resonant-excitation collision-induced dissociation (CID). This evaluation demonstrated that FTMS analysis with a resolution setting of 450,000 allows distinguishing isotopes from different lipid species and features a linear dynamic quantification range of at least four orders of magnitude. Evaluation of fragmentation analysis demonstrated that combined use of HCD and CID yields complementary fragment ions of molecular lipid species. To support global lipidome analysis, we designed a method, termed MSALL, featuring high resolution FTMS analysis for lipid quantification, and FTMS2 analysis using both HCD and CID and ITMS3 analysis utilizing dual CID for in-depth structural characterization of molecular glycerophospholipid species. The performance of the MSALL method was benchmarked in a comparative analysis of mouse cerebellum and hippocampus. This analysis demonstrated extensive lipidome quantification covering 311 lipid species encompassing 20 lipid classes, and identification of 202 distinct molecular glycerophospholipid species when applying a novel high confidence filtering strategy. The work presented here validates the performance of the Orbitrap Fusion mass spectrometer for in-depth lipidome analysis.

  14. Characterization of moenomycin antibiotics from medicated chicken feed by ion-trap mass spectrometry with electrospray ionization.

    PubMed

    Eichhorn, Peter; Aga, Diana S

    2005-01-01

    The antimicrobial moenomycin, commonly used as a growth promoter in livestock, was isolated from medicated chicken feed. The purified extract was subjected to reversed-phase liquid chromatographic separation followed by structural characterization using ion-trap mass spectrometry (ITMS), which allowed identification of five moenomycins (A, A12, C1, C3, and C4) as the major components. The fragmentation patterns of the protonated and deprotonated moenomycin molecules, as well as of a series of sodium adducts, were investigated using ITMS after electrospray ionization. While the protonated molecules [M+H]+ proved highly unstable and underwent extensive in-source fragmentation, isolation and activation of the [M--H]- ions (m/z 1580 for moenomycin-A) yielded simple mass spectra with a dominant base peak corresponding to the loss of the carboxy-glycol and the C25-hydrocarbon chain (m/z 1152 for moenomycin-A). Further study of this fragment ion in an MS3 experiment gave rise to a peculiar product ion (m/z 902 for moenomycin-A) that was attributed to the expulsion of a carbohydrate moiety representing a central building block of the linear molecule. In positive ion mode the generation of the mono-sodiated adduct ions, [M+Na]+, was promoted by amending the mobile phase with 100 microM sodium acetate, but this also resulted in higher adducts of the type [M+2Na--H]+ and [M+3Na--2H]+ arising from the formation of the sodium salts of the phosphate acid diester and subsequently of the carboxylic acid. Substantial differences among the fragment-rich product ion profiles of the three species were observed, and could in part be traced back to the mode of complexation of the additional sodium cation(s). (c) 2005 John Wiley & Sons, Ltd.

  15. Identification of carcinogen DNA adducts in human saliva by linear quadrupole ion trap/multistage tandem mass spectrometry.

    PubMed

    Bessette, Erin E; Spivack, Simon D; Goodenough, Angela K; Wang, Tao; Pinto, Shailesh; Kadlubar, Fred F; Turesky, Robert J

    2010-07-19

    DNA adducts of carcinogens derived from tobacco smoke and cooked meat were identified by liquid chromatography-electrospray ionization/multistage tandem mass spectrometry (LC-ESI/MS/MS(n)) in saliva samples from 37 human volunteers on unrestricted diets. The N-(deoxyguanosin-8-yl) (dG-C8) adducts of the heterocyclic aromatic amines 2-amino-1-methyl-6-phenylimidazo[4,5-b]pyridine (PhIP), 2-amino-9H-pyrido[2,3-b]indole (AalphaC), 2-amino-3,8-dimethylmidazo[4,5-f]quinoxaline (MeIQx), and the aromatic amine, 4-aminobiphenyl (4-ABP), were characterized and quantified by LC-ESI/MS/MS(n), employing consecutive reaction monitoring at the MS(3) scan stage mode with a linear quadrupole ion trap (LIT) mass spectrometer (MS). DNA adducts of PhIP were found most frequently: dG-C8-PhIP was detected in saliva samples from 13 of 29 ever-smokers and in saliva samples from 2 of 8 never-smokers. dG-C8-AalphaC and dG-C8-MeIQx were identified solely in saliva samples of three current smokers, and dG-C8-4-ABP was detected in saliva from two current smokers. The levels of these different adducts ranged from 1 to 9 adducts per 10(8) DNA bases. These findings demonstrate that PhIP is a significant DNA-damaging agent in humans. Saliva appears to be a promising biological fluid in which to assay DNA adducts of tobacco and dietary carcinogens by selective LIT MS techniques.

  16. Comprehensive lipidome analysis by shotgun lipidomics on a hybrid quadrupole-orbitrap-linear ion trap mass spectrometer.

    PubMed

    Almeida, Reinaldo; Pauling, Josch Konstantin; Sokol, Elena; Hannibal-Bach, Hans Kristian; Ejsing, Christer S

    2015-01-01

    Here we report on the application of a novel shotgun lipidomics platform featuring an Orbitrap Fusion mass spectrometer equipped with an automated nanoelectrospray ion source. To assess the performance of the platform for in-depth lipidome analysis, we evaluated various instrument parameters, including its high resolution power unsurpassed by any other contemporary Orbitrap instrumentation, its dynamic quantification range and its efficacy for in-depth structural characterization of molecular lipid species by quadrupole-based higher-energy collisional dissociation (HCD), and ion trap-based resonant-excitation collision-induced dissociation (CID). This evaluation demonstrated that FTMS analysis with a resolution setting of 450,000 allows distinguishing isotopes from different lipid species and features a linear dynamic quantification range of at least four orders of magnitude. Evaluation of fragmentation analysis demonstrated that combined use of HCD and CID yields complementary fragment ions of molecular lipid species. To support global lipidome analysis, we designed a method, termed MS(ALL), featuring high resolution FTMS analysis for lipid quantification, and FTMS(2) analysis using both HCD and CID and ITMS(3) analysis utilizing dual CID for in-depth structural characterization of molecular glycerophospholipid species. The performance of the MS(ALL) method was benchmarked in a comparative analysis of mouse cerebellum and hippocampus. This analysis demonstrated extensive lipidome quantification covering 311 lipid species encompassing 20 lipid classes, and identification of 202 distinct molecular glycerophospholipid species when applying a novel high confidence filtering strategy. The work presented here validates the performance of the Orbitrap Fusion mass spectrometer for in-depth lipidome analysis.

  17. Evaluation and Quantitation of Intact Wax Esters of Human Meibum by Gas-Liquid Chromatography-Ion Trap Mass Spectrometry

    PubMed Central

    Butovich, Igor A.; Arciniega, Juan C.; Lu, Hua; Molai, Mike

    2012-01-01

    Purpose. Wax esters (WE) of human meibum are one of the largest group of meibomian lipids. Their complete characterization on the level of individual intact lipid species has not been completed yet. We obtained detailed structural information on previously uncharacterized meibomian WE. Methods. Intact WE were separated and analyzed by means of high-temperature capillary gas-liquid chromatography (GLC) in combination with low voltage (30 eV) electron ionization ion trap mass spectrometry (ITMS). 3D (mass-to-charge ratio [m/z] versus lipid sample weight versus signal intensity) calibration plots were used for quantitation of WE. Results. We demonstrated that GLC-ITMS was suitable for analyzing unpooled/underivatized WE collected from 14 individual donors. More than 100 of saturated and unsaturated WE (SWE and UWE, respectively) were detected. On average, UWE represented about 82% of the total WE pool. About 90% of UWE were based on oleic acid, while less than 10% were based on palmitoleic acid. The amounts of poly-UWE were <3% of their mono-UWA counterparts. SWE were based primarily on C16–C18 fatty acids (FA) in overall molar ratios of 22:65:13. A pool of C16:0-FA was comprised of a 20:80 (mol/mol) mixture of straight chain and iso-branched isomers, while the corresponding ratio for C18:0-FA was 43:57. Interestingly, C17:0-FA was almost exclusively branched, with anteiso- and iso-isomers found in a ratio of 93:7. Conclusions. GLC-ITMS can be used successfully to analyze more than 100 individual species of meibomian WE, which were shown to comprise 41 ± 8% (wt/wt) of meibum, which made them the largest group of lipids in meibum. PMID:22531701

  18. Fragmentation pathways of synthetic and naturally occurring coumarin derivatives by ion trap and quadrupole time-of-flight mass spectrometry.

    PubMed

    Liang, Xianrui; Han, Xiaomei

    2015-09-15

    Synthetic and natural coumarin derivatives possess a wide range of biological activities. Fragmentation pathway studies are important in identifying both naturally occurring coumarins and synthetic coumarins with novel structures and properties. The fragmentation pathways of eleven coumarin derivatives are investigated by electrospray ionization (ESI) ion-trap mass spectrometry (ESI-ITMS(n) ) and ESI quadrupole time-of-flight mass spectrometry (QTOFMS) in positive mode. Compounds 1-9 in this study were newly synthesized in our laboratory. Compounds 10 and 11 were isolated from the root of Zanthoxylum armatum. The major fragmentation pathways for 11 coumarin derivatives are greatly affected by the heterocyclic ring structures and the side-chain substituents. Typical losses of small neutral molecules, such as CH3 CH2 OH, CH2 =CH2 , CO, and H2 O, are observed for compounds 1-5. Compounds 6-9 share similar fragmentation pathways through losses of CO, aromatic rings, and the coumarin skeleton. The main product ions at m/z 205, 219, and 220 observed for compounds 10 and 11 are produced by the loss of C5 H12 O2 , C4 H10 O2 , and the C4 H9 O2 radical, respectively. The fragmentation pathways of 11 coumarin derivatives are elucidated based on ITMS(n) and QTOFMS spectral data. Differences in the structures of the heterocyclic rings and side-chain substituents strongly affect the fragmentation pathways of the coumarins. The present results will facilitate further research into the fragmentation pathways and structural characterization of these classes of compounds with diverse structures. Copyright © 2015 John Wiley & Sons, Ltd. Copyright © 2015 John Wiley & Sons, Ltd.

  19. Search for efficient laser resonance ionization schemes of tantalum using a newly developed time-of-flight mass-spectrometer in KISS

    NASA Astrophysics Data System (ADS)

    Mukai, M.; Hirayama, Y.; Ishiyama, H.; Jung, H. S.; Miyatake, H.; Oyaizu, M.; Watanabe, Y. X.; Kimura, S.; Ozawa, A.; Jeong, S. C.; Sonoda, T.

    2016-06-01

    The technique of laser resonance ionization is employed for an element-selective ionization of multi-nucleon transfer reaction products which are stopped and neutralized in a gas cell filled with argon gas at 50 kPa. We have been searching for efficient laser ionization schemes for refractory elements of Z = 73-78 using a time-of-flight mass-spectrometer (TOF-MS) chamber. To evaluate the isotope shift and ionization efficiency for each candidate of the ionization scheme, isotope separation using the TOF-MS was devised. The TOF-MS was designed to separate the isotopes using two-stage linear acceleration with a mass resolving power M / ΔM of >350. A mass resolving power of 250 was experimentally confirmed by measuring the TOF of laser-ionized tantalum (Z = 73) ions with mass number 181. We searched for a laser resonance ionization scheme of tantalum using the TOF-MS.

  20. Renormalization scheme dependence of the two-loop QCD corrections to the neutral Higgs-boson masses in the MSSM.

    PubMed

    Borowka, S; Hahn, T; Heinemeyer, S; Heinrich, G; Hollik, W

    Reaching a theoretical accuracy in the prediction of the lightest MSSM Higgs-boson mass, [Formula: see text], at the level of the current experimental precision requires the inclusion of momentum-dependent contributions at the two-loop level. Recently two groups presented the two-loop QCD momentum-dependent corrections to [Formula: see text] (Borowka et al., Eur Phys J C 74(8):2994, 2014; Degrassi et al., Eur Phys J C 75(2):61, 2015), using a hybrid on-shell-[Formula: see text] scheme, with apparently different results. We show that the differences can be traced back to a different renormalization of the top-quark mass, and that the claim in Ref. Degrassi et al. (Eur Phys J C 75(2):61, 2015) of an inconsistency in Ref. Borowka et al. (Eur Phys J C 74(8):2994, 2014) is incorrect. We furthermore compare consistently the results for [Formula: see text] obtained with the top-quark mass renormalized on-shell and [Formula: see text]. The latter calculation has been added to the FeynHiggs package and can be used to estimate missing higher-order corrections beyond the two-loop level.

  1. Discovery of {sup 229}Rn and the Structure of the Heaviest Rn and Ra Isotopes from Penning-Trap Mass Measurements

    SciTech Connect

    Neidherr, D.; Boehm, Ch.; Audi, G.; Lunney, D.; Minaya-Ramirez, E.; Naimi, S.; Beck, D.; Herfurth, F.; Blaum, K.; George, S.; Kellerbauer, A.; Breitenfeldt, M.; Rosenbusch, M.; Schweikhard, L.; Cakirli, R. B.; Casten, R. F.; Herlert, A.; Kowalska, M.; Noah, E.; Penescu, L.

    2009-03-20

    The masses of the neutron-rich radon isotopes {sup 223-229}Rn have been determined for the first time, using the ISOLTRAP setup at CERN ISOLDE. In addition, this experiment marks the first discovery of a new nuclide, {sup 229}Rn, by Penning-trap mass measurement. The new, high-accuracy data allow a fine examination of the mass surface, via the valence-nucleon interaction {delta}V{sub pn}. The results reveal intriguing behavior, possibly reflecting either a N=134 subshell closure or an octupolar deformation in this region.

  2. Scheme for the direct analysis of organics in the environment by tandem mass spectrometry

    SciTech Connect

    Hunt, D.F.; Shabanowitz, J.; Harvey, T.M.; Coates, M.

    1985-01-01

    Direct analysis of hazardous organic chemicals in the environment by tandem mass spectrometry is described. Liquid and solid chemical wastes and residues from lyophilized aqueous solutions are volatilized directly into the ion source of a triple quadrupole instrument. All or most wet chemical and chromatographic separation steps are eliminated. Analysis of phthalates, aromatic hydrocarbons, chlorocarbons, phenols, amines, and carboxylic acids by functional group and molecular weight is accomplished by using the technique of collision-activated dissociation and a series of 0.5-s neutral loss and parent ion scans under data system control on a triple quadrupole instrument. Both knowns and unknowns are characterized, detection limits are at the 10-100 ppb level, and the total analysis time per sample is typically only 25-30 min.

  3. Screening for DNA adducts by data-dependent constant neutral loss-triple stage mass spectrometry with a linear quadrupole ion trap mass spectrometer.

    PubMed

    Bessette, Erin E; Goodenough, Angela K; Langouët, Sophie; Yasa, Isil; Kozekov, Ivan D; Spivack, Simon D; Turesky, Robert J

    2009-01-15

    A two-dimensional linear quadrupole ion trap mass spectrometer (LIT/MS) was employed to simultaneously screen for DNA adducts of environmental, dietary, and endogenous genotoxicants, by data-dependent constant neutral loss scanning followed by triple-stage mass spectrometry (CNL-MS3). The loss of the deoxyribose (dR) from the protonated DNA adducts ([M + H - 116]+) in the MS/MS scan mode triggered the acquisition of MS3 product ion spectra of the aglycone adducts [BH2]+. Five DNA adducts of the tobacco carcinogen 4-aminobiphenyl (4-ABP) were detected in human hepatocytes treated with 4-ABP, and three DNA adducts of the cooked-meat carcinogen 2-amino-3,8-dimethylimidazo[4,5-f]quinoxaline (MeIQx) were identified in the livers of rats exposed to MeIQx, by the CNL-MS3 scan mode. Buccal cell DNA from tobacco smokers was screened for DNA adducts of various classes of carcinogens in tobacco smoke including 4-ABP, 2-amino-9H-pyrido[2,3-b]indole (AalphaC), and benzo[a]pyrene (BaP); the cooked-meat carcinogens MeIQx, AalphaC, and 2-amino-1-methyl-6-phenylmidazo[4,5-b]pyridine (PhIP); and the lipid peroxidation products acrolein (AC) and trans-4-hydroxynonenal (HNE). The CNL-MS3 scanning technique can be used to simultaneously screen for multiple DNA adducts derived from different classes of carcinogens, at levels of adduct modification approaching 1 adduct per 108 unmodified DNA bases, when 10 microg of DNA is employed for the assay.

  4. Screening for DNA Adducts by Data-Dependent Constant Neutral Loss - Triple Stage (MS3) Mass Spectrometry with a Linear Quadrupole Ion Trap Mass Spectrometer

    PubMed Central

    Bessette, Erin E.; Goodenough, Angela K.; Langouët, Sophie; Yasa, Isil; Kozekov, Ivan D.; Spivack, Simon D.; Turesky, Robert J.

    2009-01-01

    A 2-dimensional linear quadrupole ion trap mass spectrometer (LIT/MS) was employed to simultaneously screen for DNA adducts of environmental, dietary, and endogenous genotoxicants, by data-dependent constant neutral loss scanning followed by triple-stage mass spectrometry (CNL-MS3). The loss of the deoxyribose (dR) from the protonated DNA adducts ([M+H-116]+) in the MS/MS scan mode triggered the acquisition of MS3 product ion spectra of the aglycone adducts [BH2+]. Five DNA adducts of the tobacco carcinogen 4-aminobiphenyl (4-ABP) were detected in human hepatocytes treated with 4-ABP, and three DNA adducts of the cooked-meat carcinogen 2-amino-3,8-dimethylimidazo[4,5-f]quinoxaline (MeIQx) were identified in the livers of rats exposed to MeIQx, by the CNL-MS3 scan mode. Buccal-cell DNA from tobacco smokers was screened for DNA adducts of various classes of carcinogens in tobacco smoke including 4-ABP, 2-amino-9H-pyrido[2,3-b]indole (AαC), and benzo[a]pyrene (BaP); the cooked-meat carcinogens MeIQx, AαC, and 2-amino-1-methyl-6-phenylmidazo[4,5-b]pyridine (PhIP); and the lipid peroxidation products acrolein (AC) and trans-4-hydroxynonenal (HNE). The CNL-MS3 scanning technique can be used to simultaneously screen for multiple DNA adducts derived from different classes of carcinogens, at levels of adduct modification approaching 1 adduct per 108 unmodified DNA bases, when 10 μg of DNA are employed for the assay. PMID:19086795

  5. Rapid separation and identification of furocoumarins in Angelica dahurica by high-performance liquid chromatography with diode-array detection, time-of-flight mass spectrometry and quadrupole ion trap mass spectrometry.

    PubMed

    Zhang, Hai; Gong, Chungui; Lv, Lei; Xu, Yuanjie; Zhao, Liang; Zhu, Zhenyu; Chai, Yifeng; Zhang, Guoqing

    2009-07-01

    High-performance liquid chromatography with diode-array detection (HPLC/DAD), time-of-flight mass spectrometry (HPLC/TOFMS) and quadrupole ion trap mass spectrometry (HPLC/QITMS) were used for separation, identification and structural analysis of furocoumarins in Angelica dahurica. Two furocoumarins (imperatorin and isoimperatorin) in Angelica dahurica extract were identified unambiguously by comparing their relative retention times, characteristic ultraviolet information and accurate mass measurement. A formula database of known furocoumarins in Angelica dahurica was established, against which the other 21 furocoumarins were identified effectively based on the accurate extract masses and formulae acquired by HPLC/TOFMS. In order to distinguish the isomers, multi-stage mass spectrometry (MSn, ion trap mass spectrometry) was used. General fragmentation behavior of the furocoumarins in the ion trap mass spectrometer was studied by the two furocoumarin standards, and their fragmentation rules in MS(n) spectra were summarized. These deduced fragmentation rules of furocoumarins were successfully implemented in distinguishing the three groups of isomers in Angelica dahurica by HPLC/QITMS. By using the three different analytical techniques, 23 furocoumarins in Angelica dahurica were tentatively identified within 30 min. Finally, HPLC/TOFMS fingerprints of Angelica dahurica were established by which it can be concluded that a rapid and effective method based on the three analytical techniques for identification of chemical components was established. This can provide help for further quality control of Angelica dahurica and pharmacology mechanism study of furocoumarins in Angelica dahurica.

  6. Generation of Vibrational Entangled Coherent States of Two Trapped Ions

    NASA Astrophysics Data System (ADS)

    Lin, Li-Hua; Jiang, Yun-Kun; Yang, Zhen-Biao; Ye, Sai-Yun

    2005-10-01

    We propose a scheme for the generation of entangled coherent states for the center-of-mass and relative vibrational modes of two trapped ions. In the scheme the ions are simultaneously illuminated by a single standing-wave laser tuned to the carrier. The scheme allows the production of an entangled coherent states with a considerably high speed as long as a laser field of sufficiently high intensity is available. The project supported by National Natural Science Foundation of China under Grant No. 10225421 and the Funds from Fuzhou University

  7. Online Quantification of Criegee Intermediates of α-Pinene Ozonolysis by Stabilization with Spin Traps and Proton-Transfer Reaction Mass Spectrometry Detection.

    PubMed

    Giorio, Chiara; Campbell, Steven J; Bruschi, Maurizio; Tampieri, Francesco; Barbon, Antonio; Toffoletti, Antonio; Tapparo, Andrea; Paijens, Claudia; Wedlake, Andrew J; Grice, Peter; Howe, Duncan J; Kalberer, Markus

    2017-03-07

    Biogenic alkenes, which are among the most abundant volatile organic compounds in the atmosphere, are readily oxidized by ozone. Characterizing the reactivity and kinetics of the first-generation products of these reactions, carbonyl oxides (often named Criegee intermediates), is essential in defining the oxidation pathways of organic compounds in the atmosphere but is highly challenging due to the short lifetime of these zwitterions. Here, we report the development of a novel online method to quantify atmospherically relevant Criegee intermediates (CIs) in the gas phase by stabilization with spin traps and analysis with proton-transfer reaction mass spectrometry. Ozonolysis of α-pinene has been chosen as a proof-of-principle model system. To determine unambiguously the structure of the spin trap adducts with α-pinene CIs, the reaction was tested in solution, and reaction products were characterized with high-resolution mass spectrometry, electron paramagnetic resonance, and nuclear magnetic resonance spectroscopy. DFT calculations show that addition of the Criegee intermediate to the DMPO spin trap, leading to the formation of a six-membered ring adduct, occurs through a very favorable pathway and that the product is significantly more stable than the reactants, supporting the experimental characterization. A flow tube set up has been used to generate spin trap adducts with α-pinene CIs in the gas phase. We demonstrate that spin trap adducts with α-pinene CIs also form in the gas phase and that they are stable enough to be detected with online mass spectrometry. This new technique offers for the first time a method to characterize highly reactive and atmospherically relevant radical intermediates in situ.

  8. Profiling N-glycans of the egg jelly coat of the sea urchin Paracentrotus lividus by MALDI-TOF mass spectrometry and capillary liquid chromatography electrospray ionization-ion trap tandem mass spectrometry systems.

    PubMed

    Şahar, Umut; Deveci, Remziye

    2017-05-01

    Sea urchin eggs are surrounded by a carbohydrate-rich layer, termed the jelly coat, that consists of polysaccharides and glycoproteins. In the present study, we describe two mass spectrometric strategies to characterize the N-glycosylation of the Paracentrotus lividus egg jelly coat, which has an alecithal-type extracellular matrix like mammalian eggs. Egg jelly was isolated, lyophilized, and dialyzed, followed by peptide N-glycosidase F (PNGase-F) treatment to release N-glycans from their protein chain. These N-glycans were then derivatized by permethylation reaction, and analyzed by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) and capillary liquid chromatography electrospray ionization-ion trap tandem mass spectroscopy (CapLC ESI-Ion trap-MS/MS). N-glycans in the egg jelly coat glycoproteins were indicated by sodiated molecules at m/z 1579.8, 1783.9, 1988.0, 2192.0, and 2397.1 for permethylated oligosaccharides on MALDI-TOF MS. Fragmentation and structural characterization of these oligosaccharides were performed by ESI-Ion trap MS/MS. Then, MALDI-TOF-MS and ESI-Ion trap-MS/MS spectra were interpreted using the GlycoWorkbench software suite, a tool for building, displaying, and profiling glycan masses, to identify the original oligosaccharide structures. The oligosaccharides of the isolated egg jelly coat were mainly of the high mannose type. © 2017 Wiley Periodicals, Inc.

  9. [Determination of sodium cyclamate in liquor by high performance liquid chromatography-tandem mass spectrometry with linear trap technology].

    PubMed

    Fang, Huiwen; Zhou, Yuan; Lu, Yuepeng; Jiang, Xiaoming; Yang, Yong

    2012-03-01

    An accurate determination of quantitative and confirmative method for sodium cyclamate in liquor by high performance liquid chromatography-tandem mass spectrometry (HPLC-MS/MS) with linear trap technology has been established. Without pretreatment, the sample was directly injected after filtering through a 0.2 microm micro filter. The HPLC separation was performed on an Atlantis dC18 column (150 mm x 2.1 mm, 3 microm) by gradient elution with methanol and water containing 0.1% (v/v) formic acid. The eluent was determined and confirmed in multiple reaction monitoring-enhanced product ion (MRM-EPI) scan mode. The acquired data from MRM for the quantitative determination, and the product ion spectra were used for library search for qualitative confirmatory analysis. External standard was used for the quantitative determination of sodium cyclamate in liquor, and good linearity (r = 0.9991) was obtained over the range of 1.320 - 132.0 microg/L. The limit of detection (LOD, S/N = 3) for sodium cyclamate was 0.1 microg/L. The average recoveries ranged from 96.38% to 107.2% at the spiked levels of 2.640, 26.40 and 100.0 microg/L with the relative standard deviations (RSDs) less than 9%. The matching degrees of the spectra for all positive samples were higher than 92%. The method is simple, accurate and efficient for the determination of sodium cyclamate in liquor and particularly suitable for confirmatory analysis of positive samples.

  10. A Generic Multiple Reaction Monitoring Based Approach for Plant Flavonoids Profiling Using a Triple Quadrupole Linear Ion Trap Mass Spectrometry

    NASA Astrophysics Data System (ADS)

    Yan, Zhixiang; Lin, Ge; Ye, Yang; Wang, Yitao; Yan, Ru

    2014-06-01

    Flavonoids are one of the largest classes of plant secondary metabolites serving a variety of functions in plants and associating with a number of health benefits for humans. Typically, they are co-identified with many other secondary metabolites using untargeted metabolomics. The limited data quality of untargeted workflow calls for a shift from the breadth-first to the depth-first screening strategy when a specific biosynthetic pathway is focused on. Here we introduce a generic multiple reaction monitoring (MRM)-based approach for flavonoids profiling in plants using a hybrid triple quadrupole linear ion trap (QTrap) mass spectrometer. The approach includes four steps: (1) preliminary profiling of major aglycones by multiple ion monitoring triggered enhanced product ion scan (MIM-EPI); (2) glycones profiling by precursor ion triggered EPI scan (PI-EPI) of major aglycones; (3) comprehensive aglycones profiling by combining MIM-EPI and neutral loss triggered EPI scan (NL-EPI) of major glycone; (4) in-depth flavonoids profiling by MRM-EPI with elaborated MRM transitions. Particularly, incorporation of the NH3 loss and sugar elimination proved to be very informative and confirmative for flavonoids screening. This approach was applied for profiling flavonoids in Astragali radix ( Huangqi), a famous herb widely used for medicinal and nutritional purposes in China. In total, 421 flavonoids were tentatively characterized, among which less than 40 have been previously reported in this medicinal plant. This MRM-based approach provides versatility and sensitivity that required for flavonoids profiling in plants and serves as a useful tool for plant metabolomics.

  11. Multiresidue analysis of 50 pesticides in grape, pomegranate, and mango by gas chromatography-ion trap mass spectrometry.

    PubMed

    Savant, Rahul H; Banerjee, Kaushik; Utture, Sagar C; Patil, Sangram H; Dasgupta, Soma; Ghaste, Manoj S; Adsule, Pandurang G

    2010-02-10

    A selective and sensitive multiresidue analysis method is reported for simultaneous determination of 50 pesticides of different chemical classes in three commercially important fruits of different nature viz. grape, pomegranate, and mango. The sample preparation method involves extraction of a 10 g sample with 10 mL of ethyl acetate; cleanup by dispersive solid phase extraction with primary secondary amine (PSA, 25 mg) for grape and PSA + graphitized carbon black (25 + 5 mg) for pomegranate and mango; and determination by gas chromatography-ion trap mass spectrometry through multiple reaction monitoring (MRM). Sample preparation under acidified (pH 4) and cold (<4 degrees C) conditions, use of PTV-large volume injection (20 microL) through multibaffled liner and chromatographic separation on a short 10 m VF-5MS capillary column gave a satisfactory response for all of the analytes including relatively unstable compounds such as captan, captafol, folpet, endrine, and iprodione within 31.8 min. The limit of quantification (LOQ) of most of the compounds was

  12. A generic multiple reaction monitoring based approach for plant flavonoids profiling using a triple quadrupole linear ion trap mass spectrometry.

    PubMed

    Yan, Zhixiang; Lin, Ge; Ye, Yang; Wang, Yitao; Yan, Ru

    2014-06-01

    Flavonoids are one of the largest classes of plant secondary metabolites serving a variety of functions in plants and associating with a number of health benefits for humans. Typically, they are co-identified with many other secondary metabolites using untargeted metabolomics. The limited data quality of untargeted workflow calls for a shift from the breadth-first to the depth-first screening strategy when a specific biosynthetic pathway is focused on. Here we introduce a generic multiple reaction monitoring (MRM)-based approach for flavonoids profiling in plants using a hybrid triple quadrupole linear ion trap (QTrap) mass spectrometer. The approach includes four steps: (1) preliminary profiling of major aglycones by multiple ion monitoring triggered enhanced product ion scan (MIM-EPI); (2) glycones profiling by precursor ion triggered EPI scan (PI-EPI) of major aglycones; (3) comprehensive aglycones profiling by combining MIM-EPI and neutral loss triggered EPI scan (NL-EPI) of major glycone; (4) in-depth flavonoids profiling by MRM-EPI with elaborated MRM transitions. Particularly, incorporation of the NH3 loss and sugar elimination proved to be very informative and confirmative for flavonoids screening. This approach was applied for profiling flavonoids in Astragali radix (Huangqi), a famous herb widely used for medicinal and nutritional purposes in China. In total, 421 flavonoids were tentatively characterized, among which less than 40 have been previously reported in this medicinal plant. This MRM-based approach provides versatility and sensitivity that required for flavonoids profiling in plants and serves as a useful tool for plant metabolomics.

  13. Determination of glycoalkaloids and relative aglycones by nonaqueous capillary electrophoresis coupled with electrospray ionization-ion trap mass spectrometry.

    PubMed

    Bianco, Giuliana; Schmitt-Kopplin, Philippe; De Benedetto, Giuseppe; Kettrup, Antonius; Cataldi, Tommaso R I

    2002-09-01

    Glycoalkaloids are naturally occurring nitrogen-containing compounds present in many species of the family Solanaceae, including cultivated and wild potatoes (Solanum spp.), tomatoes (Lycopersicon spp.), etc. These compounds have pharmacological and toxicological effects on humans due to their significant anticholinesterase activity and disruption of cell membranes. Herein is reported the development of a capillary electrophoresis (CE) method using nonaqueous (NA) separation solutions in combination with ion trap mass spectrometry (MS and MS/MS) detection for the identification and quantification of glycoalkaloids and their relative aglycones. A mixture 90:10 v/v of MeCN-MeOH containing 50 mM ammonium acetate and 1.2 M acetic acid (applied voltage of 25.5 kV) was selected as a good compromise for the separation and detection of these compounds. The electrospray MS measurements were carried out in the positive ionization mode using a coaxial sheath liquid, methanol-water (1:1) with 1% of acetic acid at a flow rate of 2.5 microL/min. Under optimized experimental conditions, the predominant ion was the protonated molecular ion ([M+H](+)) of solanidine (m/z = 398), tomatidine (m/z = 416), chaconine (m/z = 852), solanine (m/z = 868), and tomatine (m/z = 1034). MS/MS experiments were carried out systematically by changing the relative collisional energy and monitoring the intensities of the fragment ions that were not high enough to allow better quantification than with the mother ions. The method was used for analyzing glycoalkaloids in potato extracts.

  14. Generic detection of basic taxoids in wood of European Yew (Taxus baccata) by liquid chromatography-ion trap mass spectrometry.

    PubMed

    Kite, Geoffrey C; Rowe, Emily R; Veitch, Nigel C; Turner, Jill E; Dauncey, Elizabeth A

    2013-02-01

    The occurrence of the cardiotoxin taxine (comprising taxine B and several other basic taxoids) in leaves of Taxus baccata L. (European yew) is well known and has led to public concerns about the safety of eating or drinking from utensils crafted from the wood of this poisonous species. The occurrence of basic taxoids in the heartwood of T. baccata had not been examined in detail, although the bark is known to contain 2'β-deacetoxyaustrospicatine. Initial examination of heartwood extracts for 2'β-deacetoxyaustrospicatine by liquid chromatography-mass spectrometry (LC-MS) revealed the presence of this basic taxoid at about 0.0007% dry weight, using a standard isolated from bark. Analyses for taxine B, however, proved negative at the extract concentration analysed. Observing other basic taxoids within the heartwood extracts was facilitated by developing generic LC-MS methods that utilised a fragment arising from the N-containing acyl group of basic taxoids as a reporter ion. Of the various MS strategies available on a hybrid ion trap-orbitrap instrument that allowed observation of this reporter ion, combining all-ion collisions with high resolution ion filtering by the orbitrap was most effective, both in terms of the number of basic taxoids detected and sensitivity. Numerous basic taxoids, in addition to 2'β-deacetoxyaustrospicatine, were revealed by this method in heartwood extracts of T. baccata. Red wine readily extracted the basic taxoids from heartwood while coffee extracted them less efficiently. Contamination with basic taxoids could also be detected in soft cheese that had been spread onto wood. The generic LC-MS method for detecting basic taxoids complements specific methods for detecting taxine B when investigating yew poisoning cases in which the analysis of complex extracts may be required or taxine B has not been detected.

  15. Characterization of the synthesis of N,N-dimethyltryptamine by reductive amination using gas chromatography ion trap mass spectrometry.

    PubMed

    Brandt, Simon D; Moore, Sharon A; Freeman, Sally; Kanu, Abu B

    2010-07-01

    The present study established an impurity profile of a synthetic route to the hallucinogenic N,N-dimethyltryptamine (DMT). The synthesis was carried out under reductive amination conditions between tryptamine and aqueous formaldehyde in the presence of acetic acid followed by reduction with sodium cyanoborohydride. Analytical characterization of this synthetic route was carried out by gas chromatography ion trap mass spectrometry using electron- and chemical-ionization modes. Methanol was employed as a liquid CI reagent and the impact of stoichiometric modifications on side-products formation was also investigated. Tryptamine 1, DMT 2, 2-methyltetrahydro-β-carboline (2-Me-THBC, 3), N-methyl-N-cyanomethyltryptamine (MCMT, 4), N-methyltryptamine (NMT, 5), 2-cyanomethyl-tetrahydro-β-carboline (2-CM-THBC, 6) and tetrahydro-β-carboline (THBC, 7) have been detected under a variety of conditions. Replacement of formaldehyde solution with paraformaldehyde resulted in incomplete conversion of the starting material whereas a similar replacement of sodium cyanoborohydride with sodium borohydride almost exclusively produced THBC instead of the expected DMT. Compounds 1 to 7 were quantified and the limits of detection were 28.4, 87.7, 21.5, 23.4, 41.1, 36.6, and 34.9 ng mL(-1), respectively. The limits of quantification for compounds 1 to 7 were 32.4, 88.3, 25.4, 24.6, 41.4, 39.9, and 37.0 µg mL(-1), respectively. Linearity was observed in the range of 20.8-980 µg mL(-1) with correlation coefficients > 0.99. The application holds great promise in the area of forensic chemistry where development of reliable analytical methods for the detection, identification, and quantification of DMT are crucial and also in pharmaceutical analysis where DMT might be prepared for use in human clinical studies.

  16. Palladium-based Mass-Tag Cell Barcoding with a Doublet-Filtering Scheme and Single Cell Deconvolution Algorithm

    PubMed Central

    Zunder, Eli R.; Finck, Rachel; Behbehani, Gregory K.; Amir, El-ad D.; Krishnaswamy, Smita; Gonzalez, Veronica D.; Lorang, Cynthia G.; Bjornson, Zach; Spitzer, Matthew H.; Bodenmiller, Bernd; Fantl, Wendy J.; Pe’er, Dana; Nolan, Garry P.

    2015-01-01

    SUMMARY Mass-tag cell barcoding (MCB) labels individual cell samples with unique combinatorial barcodes, after which they are pooled for processing and measurement as a single multiplexed sample. The MCB method eliminates variability between samples in antibody staining and instrument sensitivity, reduces antibody consumption, and shortens instrument measurement time. Here, we present an optimized MCB protocol with several improvements over previously described methods. The use of palladium-based labeling reagents expands the number of measurement channels available for mass cytometry and reduces interference with lanthanide-based antibody measurement. An error-detecting combinatorial barcoding scheme allows cell doublets to be identified and removed from the analysis. A debarcoding algorithm that is single cell-based rather than population-based improves the accuracy and efficiency of sample deconvolution. This debarcoding algorithm has been packaged into software that allows rapid and unbiased sample deconvolution. The MCB procedure takes 3–4 h, not including sample acquisition time of ~1 h per million cells. PMID:25612231

  17. Direct Analysis of Organic Compounds in Liquid Using a Miniature Photoionization Ion Trap Mass Spectrometer with Pulsed Carrier-Gas Capillary Inlet

    NASA Astrophysics Data System (ADS)

    Lu, Xinqiong; Yu, Quan; Zhang, Qian; Ni, Kai; Qian, Xiang; Tang, Fei; Wang, Xiaohao

    2017-08-01

    A miniature ion trap mass spectrometer with capillary direct sampling and vacuum ultraviolet photoionization source was developed to conduct trace analysis of organic compounds in liquids. Self-aspiration sampling is available where the samples are drawn into the vacuum chamber through a capillary with an extremely low flow rate (less than 1 μL/min), which minimizes sample consumption in each analysis to tens of micrograms. A pulsed gas-assisted inlet was designed and optimized to promote sample transmission in the tube and facilitate the cooling of ions, thereby improving instrument sensitivity. A limit of detection of 2 ppb could be achieved for 2,4-dimethylaniline in a methanol solution. The sampling system described in the present study is specifically suitable for a miniature photoionization ion trap mass spectrometer that can perform rapid and online analysis for liquid samples.

  18. New perspectives in laser analytics: Resonance-enhanced multiphoton ionization in a Paul ion trap combined with a time-of-flight mass spectrometer

    NASA Astrophysics Data System (ADS)

    Bisling, Peter; Heger, Hans Jörg; Michaelis, Walfried; Weitkamp, Claus; Zobel, Harald

    1995-04-01

    A new laser analytical device has been developed that is based on resonance-enhanced multiphoton ionization in the very center of a radio-frequency quadrupole ion trap. Applications in speciation anlaysis of biological and enviromental samples and in materials science will all benefit from laser-optical selectivity in the resonance excitation process, combined with mass-spectropic sensivity which is further enhanced by the ion accumulation and storage capability.

  19. Trapping in TITANs Cooler Penning Trap

    NASA Astrophysics Data System (ADS)

    Kootte, Brian; Lascar, Daniel; Paul, Stefan; Gwinner, Gerald; Dilling, Jens; Titan Collaboration

    2016-09-01

    Penning trap mass spectrometry provides an excellent means of determining the masses of nuclei to high precision. Highly Charged Ions (HCIs) have been successfully used at TRIUMFs Ion Trap for Atomic and Nuclear science (TITAN) to enhance the precision of mass measurements for short-lived species. The gain in precision can theoretically scale with the charge state of the ion, but recent measurements of beam properties have shown that the process of charge breeding ions to higher charge states increases the energy spread of the ion bunch sent to the Penning trap. This reduces the gain from using HCIs. In order to maximize the precision of mass measurements, we are currently performing offline commissioning of a Cooler PEnning Trap (CPET) with the purpose of sympathetically cooling HCI bunches to an energy of 1 eV/q using a plasma of electrons. This will require implementing a nested potential configuration to trap the ions and electrons in the same region so they can interact via coulomb scattering. Recent progress in testing the trapping of electrons and singly charged ions in CPET, leading towards the cooling of HCIs prior to mass measurements in TITANs will be discussed.

  20. Reducing mass peak instability caused by the phase changes of RF and AC signals in a rectilinear ion-trap analyzer

    NASA Astrophysics Data System (ADS)

    Lu, Xinqiong; Ni, Kai; Yu, Quan; Xu, Wenchao; Qian, Xiang; Wang, Xiaohao

    2017-03-01

    For an ion trap with resonance ejection, peak intensity and peak position of the acquired mass spectra are affected by the phase difference between the radio frequency (RF) and auxiliary alternating current (AC) potentials. To ensure measurement stability, RF and AC phase-locking is commonly used in commercial ion trap mass spectrometers. In this study, a compact electronic control system was developed to accurately regulate the RF and AC phases and was employed in a photoionization rectilinear ion trap (RIT) mass spectrometer. We found that the phase-locking method was defective in multicomponent analysis because the optimal RF and AC phase difference was usually different for different m/z peaks. After studying and characterizing the relationship between the peaks and the RF and AC phases, a correction method based on data processing was used to improve the peaks' stability and accuracy. The results show that the fluctuations of both peak intensity and peak position were significantly reduced and that the instrument presented satisfying reproducibility and quantitative ability.

  1. Automation of nanoflow liquid chromatography-tandem mass spectrometry for proteome analysis by using a strong cation exchange trap column.

    PubMed

    Jiang, Xiaogang; Feng, Shun; Tian, Ruijun; Han, Guanghui; Jiang, Xinning; Ye, Mingliang; Zou, Hanfa

    2007-02-01

    An approach was developed to automate sample introduction for nanoflow LC-MS/MS (microLC-MS/MS) analysis using a strong cation exchange (SCX) trap column. The system consisted of a 100 microm id x 2 cm SCX trap column and a 75 microm id x 12 cm C18 RP analytical column. During the sample loading step, the flow passing through the SCX trap column was directed to waste for loading a large volume of sample at high flow rate. Then the peptides bound on the SCX trap column were eluted onto the RP analytical column by a high salt buffer followed by RP chromatographic separation of the peptides at nanoliter flow rate. It was observed that higher performance of separation could be achieved with the system using SCX trap column than with the system using C18 trap column. The high proteomic coverage using this approach was demonstrated in the analysis of tryptic digest of BSA and yeast cell lysate. In addition, this system was also applied to two-dimensional separation of tryptic digest of human hepatocellular carcinoma cell line SMMC-7721 for large scale proteome analysis. This system was fully automated and required minimum changes on current microLC-MS/MS system. This system represented a promising platform for routine proteome analysis.

  2. Miniaturized GC/MS instrumentation for in situ measurements: micro gas chromatography coupled with miniature quadrupole array and paul ion trap mass spectrometers

    NASA Technical Reports Server (NTRS)

    Holland, P.; Chutjian, A.; Darrach, M.; Orient, O.

    2002-01-01

    Miniaturized chemical instrumentation is needed for in situ measurements in planetary exploration and other spaceflight applications where factors such as reduction in payload requirements and enhanced robustness are important. In response to this need, we are 'continuing to develop miniaturized GC/MS instrumentation which combines chemical separations by gas chromatography (GC) with mass spectrometry (MS) to provide positive identification of chemical compounds in complex mixtures of gases, such as those found in the International Space Station's cabin atmosphere. Our design approach utilizes micro gas chromatography components coupled with either a miniature quadrupole mass spectrometer array (QMSA) or compact, high-resolution Paul ion trap.

  3. Miniaturized GC/MS instrumentation for in situ measurements: micro gas chromatography coupled with miniature quadrupole array and paul ion trap mass spectrometers

    NASA Technical Reports Server (NTRS)

    Holland, P.; Chutjian, A.; Darrach, M.; Orient, O.

    2002-01-01

    Miniaturized chemical instrumentation is needed for in situ measurements in planetary exploration and other spaceflight applications where factors such as reduction in payload requirements and enhanced robustness are important. In response to this need, we are 'continuing to develop miniaturized GC/MS instrumentation which combines chemical separations by gas chromatography (GC) with mass spectrometry (MS) to provide positive identification of chemical compounds in complex mixtures of gases, such as those found in the International Space Station's cabin atmosphere. Our design approach utilizes micro gas chromatography components coupled with either a miniature quadrupole mass spectrometer array (QMSA) or compact, high-resolution Paul ion trap.

  4. Spin readout of trapped electron qubits

    NASA Astrophysics Data System (ADS)

    Peng, Pai; Matthiesen, Clemens; Häffner, Hartmut

    2017-01-01

    We propose a scheme to read out the spin of a single electron quantum bit in a surface Paul trap using oscillating magnetic-field gradients. The readout sequence is composed of cooling, driving, amplification, and detection of the electron's motion. We study the scheme in the presence of noise and trap anharmonicities at liquid-helium temperatures. An analysis of the four procedures shows short measurement times (25 μ s ) and high fidelities (99.7 % ) are achievable with realistic experimental parameters. Our scheme performs the function of fluorescence detection in ion trapping schemes, highlighting the potential to build all-electric quantum computers based on trapped electron-spin qubits.

  5. Triggers of Permo-Triassic boundary mass extinction in South China: The Siberian Traps or Paleo-Tethys ignimbrite flare-up?

    NASA Astrophysics Data System (ADS)

    He, Bin; Zhong, Yu-Ting; Xu, Yi-Gang; Li, Xian-Hua

    2014-09-01

    Assessment of the synchroneity between the Siberian Traps and the Permo-Triassic boundary (PTB) mass extinction has led to the proposition that the Siberian flood volcanism was responsible for the severest biotic crisis in the Phanerozoic. However, recent studies suggest that the Siberian Traps may have postdated the main extinction horizon. In this paper, we demonstrate, using stratigraphy, a time and intensity coincidence between PTB volcanic ash and the main extinction horizon. Geochemistry of the PTB volcanic ashes in five sections in South China indicates that they were derived from continental magmatic arc. Zircons extracted from the PTB volcanic ashes have negative εHf(t) (- 12.9 to - 2.0) and δ18O (6.8 to 10.9‰), consistent with an acidic volcanism and a crustal-derived origin, and therefore exclude a genetic link between the PTB mass extinction and the Siberian Traps. On the basis of spatial variation in the number of the PTB volcanic ash layers and the thickness of the ash layers in South China, we propose that the PTB volcanic ash may be related to Paleo-Tethys continental arc magmatism in the Kunlun area. Ignimbrite flare-up related to rapid plate subduction during the final assemblage of the Pangea super-continent may have generated a volcanic winter, which eventually triggered the collapse of ecosystem and ultimately mass extinction at the end of the Permian. The Siberian Traps may have been responsible for a greenhouse effect and so have been responsible for both a second pulse of the extinction event and Early Triassic ecological evolution.

  6. Quadrupole ion traps.

    PubMed

    March, Raymond E

    2009-01-01

    The extraordinary story of the three-dimensional radiofrequency quadrupole ion trap, accompanied by a seemingly unintelligible theoretical treatment, is told in some detail because of the quite considerable degree of commercial success that quadrupole technology has achieved. The quadrupole ion trap, often used in conjunction with a quadrupole mass filter, remained a laboratory curiosity until 1979 when, at the American Society for Mass Spectrometry Conference in Seattle, George Stafford, Jr., of Finnigan Corp., learned of the Masters' study of Allison Armitage of a combined quadrupole ion trap/quadrupole mass filter instrument for the observation of electron impact and chemical ionization mass spectra of simple compounds eluting from a gas chromatograph. Stafford developed subsequently the mass-selective axial instability method for obtaining mass spectra from the quadrupole ion trap alone and, in 1983, Finnigan Corp. announced the first commercial quadrupole ion trap instrument as a detector for a gas chromatograph. In 1987, confinement of ions generated externally to the ion trap was demonstrated and, soon after, the new technique of electrospray ionization was shown to be compatible with the ion trap. Copyright 2009 Wiley Periodicals, Inc.

  7. Enhancing structural characterisation of glucuronidated O-linked glycans using negative mode ion trap higher energy collision-induced dissociation mass spectrometry.

    PubMed

    Ashwood, Christopher; Abrahams, Jodie L; Nevalainen, Helena; Packer, Nicolle H

    2017-05-30

    High protein production and secretion with eukaryotic glycosylation machinery make T. reesei RUT-C30 a suitable expression host for recombinant proteins. The N-glycosylation of secreted proteins of RUT-C30 is known to vary depending on culture nutrients but O-glycosylation has been less extensively studied. O-Glycans and glycopeptides from secreted proteins were separated by porous graphitised carbon and C-18 liquid chromatography, respectively. O-Glycans were analysed in negative ion mode by electrospray ionisation linear ion trap mass spectrometry and glycopeptides in positive ion mode by electrospray ionisation hybrid quadrupole-orbitrap mass spectrometry. Tandem mass spectrometry was used on O-glycans and glycopeptides including ion trap higher energy collision-induced dissociation (tHCD) to detect glycan fragments not detectable with standard ion trap fragmentation. tHCD allowed targeted MS(3) experiments to be performed on structures containing hexuronic acid, which was not possible with ion trap CID, validating this novel O-glycan composition. Positive mode C18-LC/ESI-MS/MS was used to identify and characterise glycopeptides found to be modified with this class of O-glycans, identifying cellobiohydrolase I as a carrier of these novel O-glycans. Negative mode ion trap higher energy collision-induced dissociation allowed detection and targeted MS(3) experiments to be performed on the hexuronic acid substituent of O-glycan structures, which was not possible with ion trap CID, validating the novel O-glycan composition to include hexuronic acid. Using glycopeptide analysis, this novel O-glycan composition was found to be present on the catalytic domain of cellobiohydrolase I, the most abundant secreted protein by T. reesei. These are the first reported O-glycans to contain acidic sugars in fungi and they could have significant implications for cellobiohydrolase I structure and activity as well as the activity of recombinant proteins expressed in this host system

  8. Mutual information-based template matching scheme for detection of breast masses: from mammography to digital breast tomosynthesis.

    PubMed

    Mazurowski, Maciej A; Lo, Joseph Y; Harrawood, Brian P; Tourassi, Georgia D

    2011-10-01

    Development of a computational decision aid for a new medical imaging modality typically is a long and complicated process. It consists of collecting data in the form of images and annotations, development of image processing and pattern recognition algorithms for analysis of the new images and finally testing of the resulting system. Since new imaging modalities are developed more rapidly than ever before, any effort for decreasing the time and cost of this development process could result in maximizing the benefit of the new imaging modality to patients by making the computer aids quickly available to radiologists that interpret the images. In this paper, we make a step in this direction and investigate the possibility of translating the knowledge about the detection problem from one imaging modality to another. Specifically, we present a computer-aided detection (CAD) system for mammographic masses that uses a mutual information-based template matching scheme with intelligently selected templates. We presented principles of template matching with mutual information for mammography before. In this paper, we present an implementation of those principles in a complete computer-aided detection system. The proposed system, through an automatic optimization process, chooses the most useful templates (mammographic regions of interest) using a large database of previously collected and annotated mammograms. Through this process, the knowledge about the task of detecting masses in mammograms is incorporated in the system. Then, we evaluate whether our system developed for screen-film mammograms can be successfully applied not only to other mammograms but also to digital breast tomosynthesis (DBT) reconstructed slices without adding any DBT cases for training. Our rationale is that since mutual information is known to be a robust inter-modality image similarity measure, it has high potential of transferring knowledge between modalities in the context of the mass detection

  9. Analysis of lignans in Schisandra chinensis and rat plasma by high-performance liquid chromatography diode-array detection, time-of-flight mass spectrometry and quadrupole ion trap mass spectrometry.

    PubMed

    Lou, Ziyang; Zhang, Hai; Gong, Chungui; Zhu, Zhenyu; Zhao, Liang; Xu, Yuanjie; Wang, Bin; Zhang, Guoqing

    2009-03-01

    High-performance liquid chromatography/diode-array detection (HPLC/DAD), time-of-flight mass spectrometry (HPLC/TOFMS) and quadrupole ion trap mass spectrometry (HPLC/QIT-MS) were used for separation, identification and structural analysis of lignans in Schisandra chinensis and rat plasma after oral administration of the herbal extract. Six lignans in Schisandra chinensis extract were identified unambiguously by comparing the retention time, their characteristic ultraviolet (UV) absorption and accurate mass measurement. A formula database of known lignans in Schisandra chinensis was established, against which the other 15 lignans were identified effectively based on the accurate extract masses and formulae acquired by HPLC/TOFMS. In order to distinguish the isomers, multi-stage mass spectrometry (ion trap mass spectrometry, MSn) was also used. The fragmentation behavior of the lignans in the ion trap mass spectrometer was studied by the six lignan standards, and their fragmentation rules in MSn spectra were summarized. These deduced fragmentation rules of lignans were successfully implemented in distinguishing the three groups of isomers in Schisandra chinensis by HPLC/QIT-MS. By using the three different analytical techniques, 21 lignans in Schisandra chinensis were identified within 30 min. After oral administration of the extract, 11 lignans in rat plasma were detected and identified by comparing their retention time, characteristic UV absorption and accurate mass measurement of peaks in HPLC/TOFMS chromatograms of the herbal extract. Finally, HPLC/TOFMS fingerprints of Schisandra chinensis in vitro and rat plasma in vivo were established. It is concluded that a rapid and effective method based on three analytical techniques for identification of chemical components was established, which is useful for rapid identification of multiple components in Schisandra chinensis in vitro and in vivo. In addition, it can provide help for further pharmacology and action

  10. Simulation of Duty Cycle-Based Trapping and Ejection of Massive Ions Using Linear Digital Quadrupoles: the Enabling Technology for High Resolution Time-of-Flight Mass Spectrometry in the Ultra High Mass Range.

    PubMed

    Lee, Jeonghoon; Marino, Maxwell A; Koizumi, Hideya; Reilly, Peter T A

    2011-06-15

    Duty cycle-based trapping and extraction processes have been investigated for linear digitally-driven multipoles by simulating ion trajectories. The duty cycles of the applied waveforms were adjusted so that an effective trapping or ejection electric field was created between the rods and the grounded end cap electrodes. By manipulating the duty cycles of the waveforms, the potentials of the multipole rods can be set equal for part of the waveform cycle. When all rods are negative for this period, the device traps positive ions and when all are positive, it ejects them in focused trajectories. Four Linac II electrodes[1] have been added between the quadrupole rods along the asymptotes to create an electric field along the symmetry axis for collecting the ions near the exit end cap electrode and prompt ejection. This method permits the ions to be collected and then ejected in a concentrated and collimated plug into the acceleration region of a time-of-flight mass spectrometer (TOFMS). Our method has been shown to be independent of mass. Because the resolution of orthogonal acceleration TOFMS depends primarily on the dispersion of the ions injected into the acceleration region and not on the ion mass, this technology will enable high resolution in the ultrahigh mass range (m/z > 20,000).

  11. Simulation of Duty Cycle-Based Trapping and Ejection of Massive Ions Using Linear Digital Quadrupoles: the Enabling Technology for High Resolution Time-of-Flight Mass Spectrometry in the Ultra High Mass Range

    PubMed Central

    Lee, Jeonghoon; Marino, Maxwell A.; Koizumi, Hideya; Reilly, Peter T. A.

    2011-01-01

    Duty cycle-based trapping and extraction processes have been investigated for linear digitally-driven multipoles by simulating ion trajectories. The duty cycles of the applied waveforms were adjusted so that an effective trapping or ejection electric field was created between the rods and the grounded end cap electrodes. By manipulating the duty cycles of the waveforms, the potentials of the multipole rods can be set equal for part of the waveform cycle. When all rods are negative for this period, the device traps positive ions and when all are positive, it ejects them in focused trajectories. Four Linac II electrodes[1] have been added between the quadrupole rods along the asymptotes to create an electric field along the symmetry axis for collecting the ions near the exit end cap electrode and prompt ejection. This method permits the ions to be collected and then ejected in a concentrated and collimated plug into the acceleration region of a time-of-flight mass spectrometer (TOFMS). Our method has been shown to be independent of mass. Because the resolution of orthogonal acceleration TOFMS depends primarily on the dispersion of the ions injected into the acceleration region and not on the ion mass, this technology will enable high resolution in the ultrahigh mass range (m/z > 20,000). PMID:21731427

  12. Identifying interacting proteins of a Caenorhabditis elegans voltage-gated chloride channel CLH-1 using GFP-Trap and mass spectrometry.

    PubMed

    Zhou, Zi-Liang; Jiang, Jing; Yin, Jiang-An; Cai, Shi-Qing

    2014-06-25

    Chloride channels belong to a superfamily of ion channels that permit passive passage of anions, mainly chloride, across cell membrane. They play a variety of important physiological roles in regulation of cytosolic pH, cell volume homeostasis, organic solute transport, cell migration, cell proliferation, and differentiation. However, little is known about the functional regulation of these channels. In this study, we generated an integrated transgenic worm strain expressing green fluorescence protein (GFP) fused CLC-type chloride channel 1 (CLH-1::GFP), a voltage-gated chloride channel in Caenorhabditis elegans (C. elegans). CLH-1::GFP was expressed in some unidentified head neurons and posterior intestinal cells of C. elegans. Interacting proteins of CLH-1::GFP were purified by GFP-Trap, a novel system for efficient isolation of GFP fusion proteins and their interacting factors. Mass spectrometry (MS) analysis revealed that a total of 27 high probability interacting proteins were co-trapped with CLHp-1::GFP. Biochemical evidence showed that eukaryotic translation elongation factor 1 (EEF-1), one of these co-trapped proteins identified by MS, physically interacted with CLH-1, in consistent with GFP-Trap experiments. Further immunostaining data revealed that the protein level of CLH-1 was significantly increased upon co-expression with EEF-1. These results suggest that the combination of GFP-Trap purification with MS is an excellent tool to identify novel interacting proteins of voltage-gated chloride channels in C. elegans. Our data also show that EEF-1 is a regulator of voltage-gated chloride channel CLH-1.

  13. Development of a linear ion trap/orthogonal-time-of-flight mass spectrometer for time-dependent observation of product ions by ultraviolet photodissociation of peptide ions.

    PubMed

    Kim, Tae-Young; Schwartz, Jae C; Reilly, James P

    2009-11-01

    A hybrid linear ion trap/orthogonal time-of-flight (TOF) mass spectrometer has been developed to observe time-dependent vacuum ultraviolet photodissociation product ions. In this apparatus, a reflectron TOF mass analyzer is orthogonally interfaced to an LTQ using rf-only octopole and dc quadrupole ion guides. Precursor ions are generated by electrospray ionization and isolated in the ion trap. Subsequently they are directed to the TOF source where photodissociation occurs and product ions are extracted for mass analysis. To detect photodissociation product ions having axially divergent trajectories, a large rectangular detector is utilized. With variation of the time between photodissociation and orthogonal extraction in the TOF source, product ions formed over a range of times after photoexcitation can be sampled. Time-dependent observation of product ions following 157 nm photodissociation of a singly charged tryptic peptide ion (NWDAGFGR) showed that prompt photofragment ions (x- and v-type ions) dominate the tandem mass spectrum up to 1 micros after the laser shot, but the intensities of low energy thermal fragment ions (y-type ions) become comparable several microseconds later. Different proton mobilization time scales were observed for arginine- and lysine-terminated tryptic peptides.

  14. Determination of the proton mass from a measurement of the cyclotron frequencies of D+ and H2+ in a Penning trap

    NASA Astrophysics Data System (ADS)

    Solders, A.; Bergström, I.; Nagy, Sz.; Suhonen, M.; Schuch, R.

    2008-07-01

    We determine the cyclotron frequency ratio of H2+ and D+ , applying the two-pulse Ramsey-excitation technique in the Penning-trap mass spectrometer SMILETRAP. The final result, based on probing more than 100 000 ions, is a frequency ratio of 0.999 231 659 33(17). Using a value of the D+ mass recently measured by the Seattle group, we obtain so far the most precise experimental H2+ mass value of 2.015 101 497 16(34) u. From this value a proton mass value of 1.007 276 466 95(18) u (0.18 ppb relative uncertainty) could be derived, in good agreement with the value of 1.007 276 466 89(14) u published by Van Dyck [R. S. Van Dyck, Jr., D. L. Farnham, S. L. Zafonte, and P. B. Schwinberg, in Trapped Charged Particles and Fundamental Physics, edited by D. E. Dubin and D. Schneider, AIP Conf. Proc. No. 457 (AIP, Woodbury, NY, 1999)].

  15. High-precision Penning trap mass measurements of 9,10Be and the one-neutron halo nuclide 11Be

    NASA Astrophysics Data System (ADS)

    Ringle, R.; Brodeur, M.; Brunner, T.; Ettenauer, S.; Smith, M.; Lapierre, A.; Ryjkov, V. L.; Delheij, P.; Drake, G. W. F.; Lassen, J.; Lunney, D.; Dilling, J.

    2009-05-01

    Penning trap mass measurements of 9Be, 10Be (t1 / 2 = 1.51 My), and the one-neutron halo nuclide 11Be (t1 / 2 = 13.8 s) have been performed using TITAN at TRIUMF. The resulting 11Be mass excess (ME = 20 177.60 (58) keV) is in agreement with the current Atomic Mass Evaluation (AME03) [G. Audi, et al., Nucl. Phys. A 729 (2003) 337] value, but is over an order of magnitude more precise. The precision of the mass values of 9,10Be have been improved by about a factor of four and reveal a ≈ 2 σ deviation from the AME mass values. Results of new atomic physics calculations are presented for the isotope shift of 11Be relative to 9Be, and it is shown that the new mass values essentially remove atomic mass uncertainties as a contributing factor in determining the relative nuclear charge radius from the isotope shift. The new mass values of 10,11Be also allow for a more precise determination of the single-neutron binding energy of the halo neutron in 11Be.

  16. The usefulness of a computer-aided diagnosis scheme for improving the performance of clinicians to diagnose non-mass lesions on breast ultrasonographic images.

    PubMed

    Shibusawa, Mai; Nakayama, Ryohei; Okanami, Yuko; Kashikura, Yumi; Imai, Nao; Nakamura, Takashi; Kimura, Hiroko; Yamashita, Masako; Hanamura, Noriko; Ogawa, Tomoko

    2016-07-01

    The purpose of this study was to evaluate the usefulness of a computer-aided diagnosis (CAD) scheme for improving the performance of clinicians to diagnose non-mass lesions appearing as hypoechoic areas on breast ultrasonographic images. The database included 97 ultrasonographic images with hypoechoic areas: 48 benign cases [benign lesion with benign mammary tissue or fibrocystic disease (n = 20), fibroadenoma (n = 11), and intraductal papilloma (n = 17)] and 49 malignant cases [ductal carcinoma in situ (n = 17) and invasive ductal carcinoma (n = 32)]. Seven clinicians, three expert breast surgeons, and four general surgeons participated in the observer study. They were asked their confidence level concerning the possibility of malignancy in all 97 cases with and without the use of the CAD scheme. Receiver operating characteristic (ROC) analysis was performed to evaluate the usefulness of the CAD scheme. The areas under the ROC curve (AUC) improved for all observers when they used the CAD scheme and increased from 0.649 to 0.783 (P = 0.0167). Notably, the AUC for the general surgeon group increased from 0.625 to 0.793 (P = 0.045). This study showed that the performance of clinicians to diagnose non-mass lesions appearing as hypoechoic areas on breast ultrasonographic images was improved by the use of a CAD scheme.

  17. Microfabricated ion trap array

    DOEpatents

    Blain, Matthew G.; Fleming, James G.

    2006-12-26

    A microfabricated ion trap array, comprising a plurality of ion traps having an inner radius of order one micron, can be fabricated using surface micromachining techniques and materials known to the integrated circuits manufacturing and microelectromechanical systems industries. Micromachining methods enable batch fabrication, reduced manufacturing costs, dimensional and positional precision, and monolithic integration of massive arrays of ion traps with microscale ion generation and detection devices. Massive arraying enables the microscale ion traps to retain the resolution, sensitivity, and mass range advantages necessary for high chemical selectivity. The reduced electrode voltage enables integration of the microfabricated ion trap array with on-chip circuit-based rf operation and detection electronics (i.e., cell phone electronics). Therefore, the full performance advantages of the microfabricated ion trap array can be realized in truly field portable, handheld microanalysis systems.

  18. Metabolite Profile of Salidroside in Rats by Ultraperformance Liquid Chromatography Coupled with Quadrupole Time-of-Flight Mass Spectrometry and High-Performance Liquid Chromatography Coupled with Quadrupole-Linear Ion Trap Mass Spectrometry.

    PubMed

    Hu, Zhiwei; Wang, Ziming; Liu, Yong; Wu, Yan; Han, Xuejiao; Zheng, Jian; Yan, Xiufeng; Wang, Yang

    2015-10-21

    In the present work, the salidroside metabolite profile in rat urine was investigated, and subsequently the metabolic pathways of salidroside were proposed. After administrations of salidroside at an oral dose of 100 or 500 mg/kg, rat urine samples were collected and pretreated with methanol to precipitate the proteins. The pretreated samples were analyzed by an Acquity ultraperformance liquid chromatography (UPLC) coupled with an HSS T3 column and detected by quadrupole time-of-flight mass spectrometry (Q-TOF-MS) or high-performance liquid chromatography coupled with hybrid triple-quadrupole linear ion trap mass spectrometry (HPLC/Q-trap-MS). A total of eight metabolites were detected and identified on the basis of the characteristics of their protonated ions in the urine samples. The results elucidated that salidroside was metabolized via glucuronidation, sulfation, deglycosylation, hydroxylation, methylation, and dehydroxylation pathways in vivo.

  19. Generation of cluster states in ion-trap systems

    SciTech Connect

    Zheng Shibiao

    2006-06-15

    We propose two schemes for the generation of four-qubit cluster states in ion-trap systems. The first scheme is based on resonant sideband excitation, while the second scheme does not use the vibrational mode as the memory. The schemes can be realized with presently available ion-trap techniques.

  20. A numerical approach for modelling fault-zone trapped waves

    NASA Astrophysics Data System (ADS)

    Gulley, A. K.; Kaipio, J. P.; Eccles, J. D.; Malin, P. E.

    2017-08-01

    We develop a computationally efficient approach to compute the waveforms and the dispersion curves for fault-zone trapped waves guided by arbitrary transversely isotropic across-fault velocity models. The approach is based on a Green's function type representation for FL and FR type fault-zone trapped waves. The model can be used for simulation of the waveforms generated by both infinite line sources (2-D) and point sources (3-D). The numerical scheme is based on a high order finite element approximation and, to increase computational efficiency, we make use of absorbing boundary conditions and mass lumping of finite element matrices.

  1. Structure elucidation of degradation products of the antibiotic amoxicillin with ion trap MS(n) and accurate mass determination by ESI TOF.

    PubMed

    Nägele, Edgar; Moritz, Ralf

    2005-10-01

    Today, it is necessary to identify relevant compounds appearing in discovery and development of new drug substances in the pharmaceutical industry. For that purpose, the measurement of accurate molecular mass and empirical formula calculation is very important for structure elucidation in addition to other available analytical methods. In this work, the identification and confirmation of degradation products in a finished dosage form of the antibiotic drug amoxicillin obtained under stress conditions will be demonstrated. Structure elucidation is performed utilizing liquid chromatography (LC) ion trap MS/MS and MS3 together with accurate mass measurement of the molecular ions and of the collision induced dissociation (CID) fragments by liquid chromatography electro spray ionization time-of-flight mass spectrometry (LC/ESI-TOF).

  2. Quantitative analysis of methadone and two major metabolites in hair by positive chemical ionization ion trap mass spectrometry.

    PubMed

    Wilkins, D G; Nagasawa, P R; Gygi, S P; Foltz, R L; Rollins, D E

    1996-10-01

    A sensitive and specific method for the quantitative determination of D,L-methadone (MD) and its metabolites, D,L-2-ethyl-1,5-dimethyl-3, 3-diphenylpyrrolinium (EDDP) and D,L-2-ethyl-5-methyl-3, 3-diphenyl-1-pyrroline (EMDP), in hair has been developed. Deuterated internal standards of MD, EMDP, and EDDP were added to 20-mg hair samples and digested overnight at room temperature with 1N sodium hydroxide. Calibration standards containing known concentrations of MD, EMDP, and EDDP dried onto human hair were also digested. Digest solutions were extracted by a liquid-liquid extraction procedure and analyzed with splitless injection on a Finnigan MagnumTM ion trap mass spectrometer. Chromatographic separation was achieved with helium carrier gas on a DB-5MS-30M-0.25-micron capillary column. Positive chemicaionization was used with acetone as the reagent gas. The assay was linear from 0.5 ng/mg (MD and EDDP) or 1.0 ng/mg (EMDP) to 50.0 ng/mg of human hair with correlation coefficients greater than 0.99. Intra-assay and interassay coefficients of variation were determined to be less than 20% for all three analytes at 2.0 and 10.0 ng/mg of hair. Recovery was estimated to be greater than 70% (MD and EDDP) and 53% (EMDP) at 2.0 and 10.0 ng/mg of hair. The method has been applied to the analysis of both human and rat hair. Male long-Evans rats were shaved prior to dosing to obtain their drug-free hair. Animals were then administered 15 mg/kg MD by intraperitoneal injection daily for five days. Fourteen days after the first dose, hair was collected and analyzed for MD, EMDP, and EDDP. The mean plus standard error of the mean (SEM; n = 3) concentrations of MD and EDDP in pigmented hair were 31.1 ng/mg +/- 9.6 ng/mg and 8.6 +/- 2.4 ng/mg, respectively. EMDP was detected in the hair of one of three rats. In another experiment, hair was collected from two human subjects who had received long-term methadone therapy for the treatment of heroin addiction. Subject A received 60 mg of

  3. Sensitive and comprehensive detection of chemical warfare agents in air by atmospheric pressure chemical ionization ion trap tandem mass spectrometry with counterflow introduction.

    PubMed

    Seto, Yasuo; Sekiguchi, Hiroshi; Maruko, Hisashi; Yamashiro, Shigeharu; Sano, Yasuhiro; Takayama, Yasuo; Sekioka, Ryoji; Yamaguchi, Shintaro; Kishi, Shintaro; Satoh, Takafumi; Sekiguchi, Hiroyuki; Iura, Kazumitsu; Nagashima, Hisayuki; Nagoya, Tomoki; Tsuge, Kouichiro; Ohsawa, Isaac; Okumura, Akihiko; Takada, Yasuaki; Ezawa, Naoya; Watanabe, Susumu; Hashimoto, Hiroaki

    2014-05-06

    A highly sensitive and specific real-time field-deployable detection technology, based on counterflow air introduction atmospheric pressure chemical ionization, has been developed for a wide range of chemical warfare agents (CWAs) comprising gaseous (two blood agents, three choking agents), volatile (six nerve gases and one precursor agent, five blister agents), and nonvolatile (three lachrymators, three vomiting agents) agents in air. The approach can afford effective chemical ionization, in both positive and negative ion modes, for ion trap multiple-stage mass spectrometry (MS(n)). The volatile and nonvolatile CWAs tested provided characteristic ions, which were fragmented into MS(3) product ions in positive and negative ion modes. Portions of the fragment ions were assigned by laboratory hybrid mass spectrometry (MS) composed of linear ion trap and high-resolution mass spectrometers. Gaseous agents were detected by MS or MS(2) in negative ion mode. The limits of detection for a 1 s measurement were typically at or below the microgram per cubic meter level except for chloropicrin (submilligram per cubic meter). Matrix effects by gasoline vapor resulted in minimal false-positive signals for all the CWAs and some signal suppression in the case of mustard gas. The moisture level did influence the measurement of the CWAs.

  4. [Rapid screening and confirming carcinogenic banned azo colorants in textiles by high performance liquid chromatography-linear ion trap/orbitrap high-resolution mass spectrometry].

    PubMed

    Yun, Huan; Liu, Xin; Wang, Jing; Yan, Hua; Cui, Fengyun; Zhang, Zhaohui

    2013-09-01

    A method of high performance liquid chromatography-linear ion trap/orbitrap highresolution mass spectrometry (HPLC-LTP/Orbitrap MS) was ued to screen and confirm-banned azo colorants in textiles rapidly. The analytes were reduced to carcinogenic aromatic amines with sodium dithionite in citrate buffer solution. The reduced solution was extracted bydiatomite, and loadd onto an Acquity UPLC BEH C18 column (50 mm x 2.1 MM. 1.7 microm) with a gradient elution of methanol and 0.1% (v/v) methane acid aqueous solution, and finally detected by linear ion trap/orbitrap high-resolution mass spectrometry in positive ESI mode. In mass spectrometry method, the MS spectrum of high-resolution and the collision induced dissociation (CID) spectrum of data-dependent scan mode were used for screening analysis and conformation, respectively. The calibration curves showed a good linearity in the range of 0.05 -2.00 mg/b, and the correlation coefficients (r) were higher than 0.99. By detecting spiked samples, the limits of quantification were 0.08 mg/kg for all the residues and the recoveries were in the range of 65.5% - 111.5% with the relative standard deviations (RSDs) between 0.87% and 2.49%. The results indicate that the method is simple, rapid, sensitive and suitable for the qualitative and quantitative analysis of carcinogenic aromatic amines in textiles.

  5. Generation of highly charged peptide and protein ions by atmospheric pressure matrix-assisted infrared laser desorption/ionization ion trap mass spectrometry.

    PubMed

    König, Simone; Kollas, Oliver; Dreisewerd, Klaus

    2007-07-15

    We show that highly charged ions can be generated if a pulsed infrared laser and a glycerol matrix are employed for atmospheric pressure matrix-assisted laser desorption/ionization mass spectrometry with a quadrupole ion trap. Already for small peptides like bradykinin, doubly protonated ions form the most abundant analyte signal in the mass spectra. The center of the charge-state distribution increases with the size of the analyte. For example, insulin is detected with a most abundant ion signal corresponding to a charge state of four, whereas for cytochrome c, the 10 times protonated ion species produces the most intense signal. Myoglobin is observed with up to 13 charges. The high m/z ratios allow us to use the Paul trap for the detection of MALDI-generated protein ions that are, owing to their high molecular weight, not amenable in their singly protonated charge state. Formation of multiple charges critically depends on the addition of diluted acid to the analyte-matrix solution. Tandem mass spectra generated by collision-induced dissociation of doubly charged peptides are also presented. The findings allow speculations about the involvement of electrospray ionization processes in these MALDI experiments.

  6. Identification of epoxide functionalities in protonated monofunctional analytes by using ion/molecule reactions and collision-activated dissociation in different ion trap tandem mass spectrometers.

    PubMed

    Eismin, Ryan J; Fu, Mingkun; Yem, Sonoeun; Widjaja, Fanny; Kenttämaa, Hilkka I

    2012-01-01

    A mass spectrometric method has been delineated for the identification of the epoxide functionalities in unknown monofunctional analytes. This method utilizes gas-phase ion/molecule reactions of protonated analytes with neutral trimethyl borate (TMB) followed by collision-activated dissociation (CAD) in an ion trapping mass spectrometer (tested for a Fourier-transform ion cyclotron resonance and a linear quadrupole ion trap). The ion/molecule reaction involves proton transfer from the protonated analyte to TMB, followed by addition of the analyte to TMB and elimination of methanol. Based on literature, this reaction allows the general identification of oxygen-containing analytes. Vinyl and phenyl epoxides can be differentiated from other oxygen-containing analytes, including other epoxides, based on the loss of a second methanol molecule upon CAD of the addition/methanol elimination product. The only other analytes found to undergo this elimination are some amides but they also lose O = B-R (R = group bound to carbonyl), which allows their identification. On the other hand, other epoxides can be differentiated from vinyl and phenyl epoxides and from other monofunctional analytes based on the loss of (CH(3)O)(2)BOH or formation of protonated (CH(3)O)(2)BOH upon CAD of the addition/methanol elimination product. For propylene oxide and 2,3-dimethyloxirane, the (CH(3)O)(2)BOH fragment is more basic than the hydrocarbon fragment, and the diagnostic ion (CH(3)O)(2)BOH (2) (+) is formed. These reactions involve opening of the epoxide ring. The only other analytes found to undergo (CH(3)O)(2)BOH elimination are carboxylic acids, but they can be differentiated from the rest based on several published ion/molecule reaction methods. Similar results were obtained in the Fourier-transform ion cyclotron resonance and linear quadrupole ion trap mass spectrometer.

  7. Metabonomic Study of Biochemical Changes in Human Hair of Heroin Abusers by Liquid Chromatography Coupled with Ion Trap-Time of Flight Mass Spectrometry.

    PubMed

    Xie, Pu; Wang, Tie-jie; Yin, Guo; Yan, Yan; Xiao, Li-he; Li, Qing; Bi, Kai-shun

    2016-01-01

    Hair analysis is with the advantage of non-invasive collection and long surveillance window. The present study employed a sensitive and reliable liquid chromatography coupled with ion trap-time of flight mass spectrometry method to study the metabonomic characters in the hair of 58 heroin abusers and 72 non-heroin abusers. Results indicated that certain endogenous metabolites, such as sorbitol and cortisol, were accelerated, and the level of arachidonic acid, glutathione, linoleic acid, and myristic acid was decreased in hair of heroin abusers. The metabonomic study is helpful for further understanding of heroin addiction and clinical diagnosis.

  8. Quantitative comparison of a flared and a standard heated metal capillary inlet with a voltage-assisted air amplifier on an electrospray ionization linear ion trap mass spectrometer.

    PubMed

    Dixon, R Brent; Muddiman, David C

    2007-01-01

    The performance characteristics (i.e., ion abundance and electrospray ion current) of a flared and blunt-ended heated metal capillary were evaluated with a voltage-assisted air amplifier on a linear ion trap mass spectrometer (LTQ-MS). The results demonstrated that a standard capillary afforded higher ion abundance than a flared capillary, thus further work is necessary to investigate conditions for which significant benefits with the flared capillary will be observed. The compatibility of a voltage-assisted air amplifier is explored for both types of capillaries and in all cases resulted in improved ion abundance and spray current.

  9. Quantification of prominent volatile compounds responsible for muskmelon and watermelon aroma by purge and trap extraction followed by gas chromatography-mass spectrometry determination.

    PubMed

    Fredes, Alejandro; Sales, Carlos; Barreda, Mercedes; Valcárcel, Mercedes; Roselló, Salvador; Beltrán, Joaquim

    2016-01-01

    A dynamic headspace purge-and-trap (DHS-P&T) methodology for the determination and quantification of 61 volatile compounds responsible for muskmelon and watermelon aroma has been developed and validated. The methodology is based on the application of purge-and-trap extraction followed by gas chromatography coupled to (ion trap) mass spectrometry detection. For this purpose two different P&T sorbent cartridges have been evaluated. The influence of different extraction factors (sample weight, extraction time, and purge flow) on extraction efficiency has been studied and optimised using response surface methodology. Precision, expressed as repeatability, has been evaluated by analysing six replicates of real samples, showing relative standard deviations between 3% and 27%. Linearity has been studied in the range of 10-6130 ng mL(-1) depending on the compound response, showing coefficients of correlation between 0.995 and 0.999. Detection limits ranged between 0.1 and 274 ng g(-1). The methodology developed is well suited for analysis of large numbers of muskmelon and watermelon samples in plant breeding programs.

  10. Selective injection and isolation of ions in quadrupole ion trap mass spectrometry using notched waveforms created using the inverse Fourier transform

    SciTech Connect

    Soni, M.H.; Cooks, R.G. )

    1994-08-01

    Broad-band excitation of ions is accomplished in the quadrupole ion trap mass spectrometer using notched waveforms created by the SWIFT (stored waveform inverse Fourier transform) technique. A series of notched SWIFT pulses are applied during the period of ion injection from an external Cs[sup +] source to resonantly eject all ions whose resonance frequencies fall within the frequency range of the pulse while injecting only those analyte ions whose resonance frequencies fall within the limits of the notch. This allows selective injection and accumulation of the ions of interest and continuous ejection of the unwanted ions. This is shown to result in significant improvement in S/N ratio, resolution, and sensitivity for the analyte ions of interest. Selective ion injection is demonstrated by injecting the protonated molecules of peptides VSV and gramicidin S and the intact cation of l-carnitine hydrochloride, using singly notched SWIFT pulses. Multiply notched SWIFT pulses are used to simultaneously inject ions of different m/z values of l-carnitine hydrochloride into the ion trap. A new coarse/fine ion isolation procedure, which employs a doubly notched SWIFT pulse, is demonstrated for isolating ions of a single m/z value of 4-bromobiphenyl from a population of trapped ions. 36 refs., 10 figs., 2 tabs.

  11. Galvanostatic Rejuvenation of Electrochromic WO3 Thin Films: Ion Trapping and Detrapping Observed by Optical Measurements and by Time-of-Flight Secondary Ion Mass Spectrometry.

    PubMed

    Baloukas, Bill; Arvizu, Miguel A; Wen, Rui-Tao; Niklasson, Gunnar A; Granqvist, Claes G; Vernhes, Richard; Klemberg-Sapieha, Jolanta E; Martinu, Ludvik

    2017-05-24

    Electrochromic (EC) smart windows are able to decrease our energy footprint while enhancing indoor comfort and convenience. However, the limited durability of these windows, as well as their cost, result in hampered market introduction. Here, we investigate thin films of the most widely studied EC material, WO3. Specifically, we combine optical measurements (using spectrophotometry in conjunction with variable-angle spectroscopic ellipsometry) with time-of-flight secondary ion mass spectrometry and atomic force microscopy. Data were taken on films in their as-deposited state, after immersion in a Li-ion-conducting electrolyte, after severe degradation by harsh voltammetric cycling and after galvanostatic rejuvenation to regain the original EC performance. Unambiguous evidence was found for the trapping and detrapping of Li ions in the films, along with a thickness increase or decrease during degradation and rejuvenation, respectively. It was discovered that (i) the trapped ions exhibited a depth gradient; (ii) following the rejuvenation procedure, a small fraction of the Li ions remained trapped in the film and gave rise to a weak short-wavelength residual absorption; and (iii) the surface roughness of the film was larger in the degraded state than in its virgin and rejuvenated states. These data provide important insights into the degradation mechanisms of EC devices and into means of achieving improved durability.

  12. Trapping Ring Electrode Cell: A FTICR Mass Spectrometer Cell for Improved Signal-to-Noise and Resolving Power

    PubMed Central

    Weisbrod, Chad R.; Kaiser, Nathan K.; Skulason, Gunnar E.; Bruce, James E.

    2010-01-01

    A novel FTICR cell called the trapping ring electrode cell (TREC) has been conceived, simulated, developed, and tested. The performance of the TREC is compared to a closed cylindrical cell at different excited cyclotron radii. The TREC permits the ability to maintain coherent ion motion at larger initial excited cyclotron radii by decreasing the change in radial electric field with respect to z-axis position in the cell. This is accomplished through postexcitation modulation of the trapping potentials applied to segmented trap plates. Resolving power approaching the theoretical limit was achieved using the novel TREC technology; over 420 000 resolving power was observed on melittin [M + 4H]4+ species when employed under modest magnetic field strength (3T) and a data acquisition duration of 13 s. A 10-fold gain in signal-to-noise ratio is demonstrated over the closed cylindrical cell optimized with common potentials on all ring electrodes. The observed frequency drift during signal acquisition over long time periods was also significantly reduced, resulting in improved resolving power. PMID:18681460

  13. Application of electrospray ionization hybrid ion trap/time-of-flight mass spectrometry in the rapid characterization of quinocetone metabolites formed in vitro.

    PubMed

    Liu, Zhao-Ying; Huang, Ling-Li; Chen, Dong-Mei; Dai, Meng-Hong; Tao, Yan-Fei; Wang, Yu-Lian; Yuan, Zong-Hui

    2010-02-01

    The application of electrospray ionization hybrid ion trap/time-of-flight mass spectrometry coupled with high-performance liquid chromatography (LC/MS-IT-TOF) in the rapid characterization of in vitro metabolites of quinocetone was developed. Metabolites formed in rat liver microsomes were separated using a VP-ODS column with gradient elution. Multiple scans of metabolites in MS and MS(2) modes and accurate mass measurements were automatically performed simultaneously through data-dependent acquisition in only a 30-min analysis. Most measured mass errors were less than 10 ppm for both protonated molecules and fragment ions using external mass calibration. The elemental compositions of all fragment ions of quinocetone and its metabolites could be rapidly assigned based upon the known compositional elements of protonated molecules. The structure of metabolites were elucidated based on the combination of three techniques: agreement between their proposed structure, the accurate masses, and the elemental composition of ions in their mass spectra; comparison of their changes in accurate molecular masses and fragment ions with those of parent drug or metabolite; and the elemental compositions of lost mass numbers in proposed fragmentation pathways. Twenty-seven phase I metabolites were identified as 11 reduction metabolites, three direct hydroxylation metabolites, and 13 metabolites with a combination of reduction and hydroxylation. All metabolites except the N-oxide reduction metabolite M6 are new metabolites of quinocetone, which were not previously reported. The ability to conduct expected biotransformation profiling via tandem mass spectrometry coupled with accurate mass measurement, all in a single experimental run, is one of the most attractive features of this methodology. The results demonstrate the use of LC/MS-IT-TOF approach appears to be rapid, efficient, and reliable in structural characterization of drug metabolites.

  14. Mass measurements in the vicinity of the r p-process and the {nu} p-process paths with the Penning trap facilities JYFLTRAP and SHIPTRAP

    SciTech Connect

    Weber, C.; Elomaa, V.-V.; Aeystoe, J.; Eronen, T.; Hager, U.; Hakala, J.; Jokinen, A.; Kankainen, A.; Moore, I. D.; Penttilae, H.; Rahaman, S.; Rissanen, J.; Saastamoinen, A.; Sonoda, T.; Ferrer, R.; Froehlich, C.; Ackermann, D.; Block, M.; Dworschak, M.; Herfurth, F.

    2008-11-15

    The masses of very neutron-deficient nuclides close to the astrophysical r p- and {nu} p-process paths have been determined with the Penning trap facilities JYFLTRAP at JYFL/Jyvaeskylae and SHIPTRAP at GSI/Darmstadt. Isotopes from yttrium (Z=39) to palladium (Z=46) have been produced in heavy-ion fusion-evaporation reactions. In total, 21 nuclides were studied, and almost half of the mass values were experimentally determined for the first time: {sup 88}Tc, {sup 90-92}Ru, {sup 92-94}Rh, and {sup 94,95}Pd. For the {sup 95}Pd{sup m}, (21/2{sup +}) high-spin state, a first direct mass determination was performed. Relative mass uncertainties of typically {delta}m/m=5x10{sup -8} were obtained. The impact of the new mass values has been studied in {nu} p-process nucleosynthesis calculations. The resulting reaction flow and the final abundances are compared with those obtained with the data of the Atomic Mass Evaluation 2003.

  15. Three-dimensional thermal and fluid mixing analysis using the mass-flow-weighted skew-upwind differencing scheme. Final report. [PWR

    SciTech Connect

    Hassan, Y.A.

    1985-02-01

    The upwind finite difference scheme used in the COMMIX-1A code to approximate the convective transport term was shown to contribute more artificial diffusivity to the computed temperature field than the total physical diffusivity that could be inferred from experimental observations of the thermal mixing processes. With aim to reduce such numerical error, a new finite difference scheme called the mass-flow-weighted skew-upwind approach was developed, incorporated in COMMIX-1A, and evaluated by comparison with known analytical solutions and experimental data. This report describes the follow-on activities pursued to demonstrate the applicability of the new finite difference scheme to simulations of pressurized thermal shock events. These activities include benchmarking the code against the Creare one-fifth-scale test 51 and simulating mixing in the full-scale cold leg and downcomer of a Babcock and Wilcox plant using both the upwind and the mass-flow-weighted skew-upwind finite difference scehmes. The new scheme is shown to considerably reduce the amount of artifical diffusivity contributed to the computed temperature field by the convective term approximation.

  16. Histologic diagnosis of pancreatic masses using 25-gauge endoscopic ultrasound needles with and without a core trap: a multicenter randomized trial.

    PubMed

    Kamata, Ken; Kitano, Masayuki; Yasukawa, Satoru; Kudo, Masatoshi; Chiba, Yasutaka; Ogura, Takeshi; Higuchi, Kazuhide; Fukutake, Nobuyasu; Ashida, Reiko; Yamasaki, Tomoaki; Nebiki, Hiroko; Hirose, Satoru; Hoki, Noriyuki; Asada, Masanori; Yazumi, Shujiro; Takaoka, Makoto; Okazaki, Kazuichi; Matsuda, Fumihiro; Okabe, Yoshihiro; Yanagisawa, Akio

    2016-07-01

    Endoscopic ultrasound-guided fine needle aspiration (EUS-FNA) with 25-gauge needles yields small volume samples that are mainly processed for cytology. Using 25-gauge needles with a core trap may overcome this limitation. This trial compared 25-gauge needles with and without a core trap in terms of their ability to obtain histologic samples from solid pancreatic masses. Consecutive patients with solid pancreatic masses who presented to eight Japanese referral centers for EUS-FNA in April - September 2013 were randomized to undergo sampling with a 25-gauge needle with a core trap (ProCore) or a standard 25-gauge needle. Tissue samples were fixed in formalin and processed for histologic evaluation. For the purpose of this study only samples obtained with the first needle pass were used for comparison of: (i) accuracy for the diagnosis of malignancy, (ii) rate of samples with preserved tissue architecture adequate for histologic evaluation, and (iii) sample cellularity. A total of 214 patients were enrolled. Compared to the first pass with a standard needle (n = 108), the first pass with the ProCore needle (n = 106) provided samples that were more often adequate for histologic evaluation (81.1 % vs. 69.4 %; P = 0.048) and had superior cellularity (rich/moderate/poor, 36 %/27 %/37 % vs. 19 %/26 %/55 %; P = 0.003). There were no significant differences between the two needles in sensitivity (75.6 % vs. 69.0 %, P = 0.337) and accuracy (79.2 % vs. 75.9 %, P = 0.561) for the diagnosis of malignancy. In patients with solid pancreatic masses, a 25-gauge EUS-FNA needle with a core trap provides histologic samples of better quality than a standard 25-gauge needle. There was no difference in accuracy for the diagnosis of malignancy between the needles. UMIN000010021. © Georg Thieme Verlag KG Stuttgart · New York.

  17. Characterization of the impurities and isomers in cefetamet pivoxil hydrochloride by liquid chromatography/time-of-flight mass spectrometry and ion trap mass spectrometry.

    PubMed

    Wang, Dandan; Wang, Fan; Wang, Jian

    2015-01-01

    Ten impurities and isomers in cefetamet pivoxil hydrochloride drug substance made in China were separated and identified by HPLC-MS(n) (TOF and TRAP). Their fragmentation patterns and structural assignment were studied based on the HPLC-MS(n) data. Among the ten impurities and isomers, impurity VII was isolated by preparative HPLC, and its structure was confirmed by (1)H NMR data. Copyright © 2015 Elsevier B.V. All rights reserved.

  18. The use of online heart-cutting high-performance liquid chromatography coupled with linear ion trap mass spectrometry in the identification of impurities in vidarabine monophosphate.

    PubMed

    Wang, Hang; Xu, Tongzhou; Yuan, Jiaojian

    2017-04-01

    It is difficult to identify unknown impurities in nucleotide analogues by mass spectrometry because mass-spectrometry-incompatible mobile phases need to be used to separate the major ingredient from impurities. In this study, vidarabine monophosphate was selected, and unknown impurities were identified by online heart-cutting two-dimensional high-performance liquid chromatography and linear ion trap mass spectrometry. The one-dimensional reversed-phase column was filled with a mobile phase containing nonvolatile salt. In two-dimensional high-performance liquid chromatography, we used an Acclaim Q1 column with volatile salt, and the detection wavelength was 260 nm. The mass spectrum was scanned in positive- and negative-ion mode. The online heart-cutting and online demineralization technique ensured that the mobile phase was compatible with mass spectrometry; seven impurities were identified by MS(2) and MS(3) fragments. The mass fragmentation patterns of these impurities were investigated. The two isomers were semiprepared and complemented by nuclear magnetic resonance. The results were further compared with those of normal-phase high-performance liquid chromatography with mass spectrometry. The online heart-cutting two-dimensional high-performance liquid chromatography with mass spectrometry was superior in identifying more impurities. The method solves the problem of incompatibility between the mobile phase and mass spectrometry, so it is suitable for identifying unknown impurities. This method may also be used for investigating impurities in other nucleotide analogues. © 2017 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  19. Developing optical traps for ultra-sensitive analysis

    SciTech Connect

    Zhao, X.; Vieira, D.J.; Guckert, R. |; Crane, S.

    1998-09-01

    The authors describe the coupling of a magneto-optical trap to a mass separator for the ultra-sensitive detection of selected radioactive species. As a proof of principle test, they have demonstrated the trapping of {approximately} 6 million {sup 82} Rb (t{sub 1/2} = 75 s) atoms using an ion implantation and heated foil release method for introducing the sample into a trapping cell with minimal gas loading. Gamma-ray counting techniques were used to determine the efficiencies of each step in the process. By far the weakest step in the process is the efficiency of the optical trap itself (0.3%). Further improvements in the quality of the nonstick dryfilm coating on the inside of the trapping cell and the possible use of larger diameter laser beams are indicated. In the presence of a large background of scattered light, this initial work achieved a detection sensitivity of {approximately} 4,000 trapped atoms. Improved detection schemes using a pulsed trap and gated photon detection method are outlined. Application of this technology to the areas of environmental monitoring and nuclear proliferation are foreseen.

  20. High-throughput walkthrough detection portal for counter terrorism: detection of triacetone triperoxide (TATP) vapor by atmospheric-pressure chemical ionization ion trap mass spectrometry.

    PubMed

    Takada, Yasuaki; Nagano, Hisashi; Suzuki, Yasutaka; Sugiyama, Masuyuki; Nakajima, Eri; Hashimoto, Yuichiro; Sakairi, Minoru

    2011-09-15

    With the aim of improving security, a high-throughput portal system for detecting triacetone triperoxide (TATP) vapor emitted from passengers and luggage was developed. The portal system consists of a push-pull air sampler, an atmospheric-pressure chemical ionization (APCI) ion source, and an explosives detector based on mass spectrometry. To improve the sensitivity of the explosives detector, a novel linear ion trap mass spectrometer with wire electrodes (wire-LIT) is installed in the portal system. TATP signals were clearly obtained 2 s after the subject under detection passed through the portal system. Preliminary results on sensitivity and throughput show that the portal system is a useful tool for preventing the use of TATP-based improvised explosive devices by screening persons in places where many people are coming and going.

  1. Determination of carnitine and acylcarnitines in urine by high-performance liquid chromatography-electrospray ionization ion trap tandem mass spectrometry.

    PubMed

    Vernez, Laurence; Hopfgartner, Gérard; Wenk, Markus; Krähenbühl, Stephan

    2003-01-17

    A high-performance liquid chromatography-mass spectrometry method has been developed for the simultaneous determination of native carnitine and eight acylcarnitines in urine. The procedure uses a solid-phase extraction on a cation-exchange column and the separation is performed without derivatization within 17 min on a reversed-phase C8 column in the presence of a volatile ion-pairing reagent. The detector was an ion trap mass spectrometer and quantification was carried out in the MS-MS mode. Validation was done for aqueous standards at ranges between 0.75 and 200 micromol/l, depending on the compound. Carnitine was quantified in urine and comparison with a radioenzymatic assay gave a satisfactory correlation (R2 = 0.981). The assay could be successfully applied to the diagnostic of pathological acylcarnitines profile of metabolic disorders in urines of patients suffering from different organic acidurias.

  2. Anatoxins and degradation products, determined using hybrid quadrupole time-of-flight and quadrupole ion-trap mass spectrometry: forensic investigations of cyanobacterial neurotoxin poisoning.

    PubMed

    James, Kevin J; Crowley, Janet; Hamilton, Brett; Lehane, Mary; Skulberg, Olav; Furey, Ambrose

    2005-01-01

    The potent neurotoxins from cyanobacteria, anatoxin-a (AN), its methyl analogue, homoanatoxin-a (HMAN), and their degradation products, have been studied using nano-electrospray hybrid quadrupole time-of-flight mass spectrometry (QqTOF-MS). The anatoxin degradation products, which are readily produced in vivo by either reduction or epoxidation, were also examined in this study. The high mass accuracy QqTOF-MS data was used to confirm formula assignments for major product ions and quadrupole ion-trap (QIT)-MS was used to construct fragmentation pathways for anatoxins. Significant differences between these fragmentation pathways were observed. Comparisons between the spectra of compounds that differ in side-chain length (the AN and HMAN series) were used to identify ions that are characteristic of the homologues. The application to forensic samples in which the principal neurotoxin had undergone rapid biodegradation has been demonstrated and used to confirm anatoxin poisoning of dogs. Copyright 2005 John Wiley & Sons, Ltd.

  3. Simultaneous doping analysis of main urinary metabolites of anabolic steroids in horse by ion-trap gas chromatography-tandem mass spectrometry.

    PubMed

    Yamada, Masayuki; Aramaki, Sugako; Kurosawa, Masahiko; Kijima-Suda, Isao; Saito, Koichi; Nakazawa, Hiroyuki

    2008-09-01

    The use of anabolic steroids in racehorses is strictly regulated. We have developed a method for the simultaneous analysis of 11 anabolic steroids: fluoxymesterone, 17alpha-methyltestosterone, mestanolone, methandienone, methandriol, oxymetholone, boldenone, furazabol, methenolone, nandrolone, and stanozolol, for possible application to a doping test in racehorses. We selected 15 kinds of target substances for a doping test from the main metabolites of these anabolic steroids, and established a method for simultaneous analysis. Urine was hydrolyzed and subjected to solid-phase extraction. Then, the residue from the extracts was derivatized by trimethylsilylation. The derivatized samples were subjected to ion-trap gas chromatography-tandem mass spectrometry, and their mass chromatograms and product ion spectra were obtained. The limit of detection of the target substances was 5-50 ng/mL, and the mean recovery and coefficient of variation were 71.3-104.8% and 1.1-9.5%, respectively.

  4. Profiling of phenolic constituents in Polygonum multiflorum Thunb. by combination of ultra-high-pressure liquid chromatography with linear ion trap-Orbitrap mass spectrometry.

    PubMed

    Qiu, Xiaohui; Zhang, Jing; Huang, Zhihai; Zhu, Dayuan; Xu, Wen

    2013-05-31

    A simple and effective method was developed for characterization of phenolic constituents in the roots of Polygonum multiflorum by combination of ultra-high-pressure liquid chromatography with linear ion trap-Orbitrap tandem mass spectrometry (UHPLC-LTQ-Orbitrap). Stilbenes, anthraquinones, tannins and naphthalenes were differentiated by diagnostic fragment ions with accurate mass measurements and characteristic fragmentation pathways. Based on the proposed strategy, fifty-nine constituents were characterized or tentatively identified, of which twenty-two constituents were the first to be reported in P. multiflorum and twelve compounds were characterized as potential new compounds. The identification and structure elucidation of these chemicals provided essential data for further phytochemical studies and quality control of P. multiflorum. The results also demonstrated that our novel method can be extended to screen and characterize other phenolic constituents and their metabolites in botanical extracts.

  5. Methanol chemical ionization quadrupole ion trap mass spectrometry of O-ethyl S-[2-(diisopropylamino)ethyl] methylphosphonothiolate (VX) and its degradation products.

    PubMed

    Rohrbaugh, D K

    2000-10-06

    Mass spectrometric analysis of O-ethyl S-[2-(diisopropylamino)ethyl] methylphosphonothiolate (VX) degradation products by electron ionization produces extensive fragmentation with little or no molecular ion information making product identification difficult. Milder chemical ionization (CI) is commonly used to provide molecular mass and structure confirmation. In this study, methanol was used as a CI reagent in combination with an ion trap detector for detection and identification of over 30 compounds present in a thermally degraded sample of VX. The use of methanol provides superior results for this class of compounds with less fragmentation than commonly observed with gas reagents and offers logistical advantages for on-site analysis by being easier to transport and safer to use than gas cylinders.

  6. Determination of non-ionic polyethoxylated surfactants in wastewater and river water by mixed hemimicelle extraction and liquid chromatography-ion trap mass spectrometry.

    PubMed

    Cantero, Manuel; Rubio, Soledad; Pérez-Bendito, Dolores

    2005-03-04

    The capability of hemimicelles-based solid phase extraction (SPE)/liquid chromatography/atmospheric pressure chemical ionisation in positive mode, ion trap mass spectrometry (LC/(APCl+-IT)-MS) for the concentration, separation and quantitation of non-ionic surfactants has been investigated. Concentration was based on the formation of mixed aggregates of analytes [alkylphenol ethoxylates (APE, octyl and nonyl) and alkyl ethoxylates (AE, C12-C16)] with the anionic surfactant sodium dodecyl sulphate (SDS) that is adsorbed on alumina. Parameters affecting SPE were investigated on the basis that hemimicelles are dynamic entities in equilibrium with the aqueous phase. The performance of ion trap mass spectrometry for MS and MS/MS quantitation of non-ionic homologues was assessed. Recoveries of analytes from wastewater influent and effluent and river water samples ranged between 91 and 98% and were found independent on the length of the alkyl chain under the optimised conditions. Anionic surfactants did not interfere to the levels found in environmental samples. The detection limits ranged between 14 and 111 ng/l for wastewater influent, 10 and 40 for wastewater effluent and 4 and 35 for river water, after concentration of 250, 500 and 750 ml of sample, respectively. The approach was applied to the determination of AE and APE in influent and effluent samples from four wastewater treatment plants and four river samples. The concentrations of individual non-ionic surfactants found ranged between 0.3 and 373 microg/l.

  7. Screening and characterization of reactive compounds with in vitro peptide-trapping and liquid chromatography/high-resolution accurate mass spectrometry.

    PubMed

    Wei, Cong; Chupak, Louis S; Philip, Thomas; Johnson, Benjamin M; Gentles, Robert; Drexler, Dieter M

    2014-02-01

    The present study describes a novel methodology for the detection of reactive compounds using in vitro peptide-trapping and liquid chromatography-high-resolution accurate mass spectrometry (LC-HRMS). Compounds that contain electrophilic groups can covalently bind to nucleophilic moieties in proteins and form adducts. Such adducts are thought to be associated with drug-mediated toxicity and therefore represent potential liabilities in drug discovery programs. In addition, reactive compounds identified in biological screening can be associated with data that can be misinterpreted if the reactive nature of the compound is not appreciated. In this work, to facilitate the triage of hits from high-throughput screening (HTS), a novel assay was developed to monitor the formation of covalent peptide adducts by compounds suspected to be chemically reactive. The assay consists of in vitro incubations of test compounds (under conditions of physiological pH) with synthetically prepared peptides presenting a variety of nucleophilic moieties such as cysteine, lysine, histidine, arginine, serine, and tyrosine. Reaction mixtures were analyzed using full-scan LC-HRMS, the data were interrogated using postacquisition data mining, and modified amino acids were identified by subsequent LC-HRMS/mass spectrometry. The study demonstrated that in vitro nucleophilic peptide trapping followed by LC-HRMS analysis is a useful approach for screening of intrinsically reactive compounds identified from HTS exercises, which are then removed from follow-up processes, thus obviating the generation of data from biochemical activity assays.

  8. Rapid method for the determination of non-steroidal anti-inflammatory drugs in animal tissue by liquid chromatography-mass spectrometry with ion-trap detector.

    PubMed

    Igualada, Carmen; Moragues, Francisco; Pitarch, Jorge

    2007-03-14

    A rapid and new liquid chromatography-mass spectrometry with ion-trap detection method for the determination of meloxicam (MLX), flunixin meglumine (FLU), carprofen (CPF), and tolfenamic acid (TOLF) in animal tissue is described. MRLs between 10 and 500 microg kg(-1) in muscle and between 65 and 1000 microg kg(-1) in liver, from different animal species have been established in the EU for these compounds. After chemical hydrolysis, an organic extraction from homogenised tissue was performed. Final extract was injected in a liquid chromatograph with an ion-trap mass spectrometer with electrospray interface. Four identification points (one precursor and two product ions) and a minimum of one ion ratio was monitored for each compound. For quantitative purposes flunixin-D3 (FLU-D3) was used as internal standard. The method was validated using fortified blank muscle and liver from different animal species according to the 2002/657/EC European decision criteria. The decision limits (CCalpha) and detection capabilities (CCbeta) were determined and their values were at concentrations near the MRL for each substance.

  9. Automated trace determination of earthy-musty odorous compounds in water samples by on-line purge-and-trap-gas chromatography-mass spectrometry.

    PubMed

    Salemi, Amir; Lacorte, Sílvia; Bagheri, Habib; Barceló, Damià

    2006-12-15

    An automated technique based on purge-and-trap coupled to gas chromatography with mass spectrometric detection has been developed and optimized for the trace determination of five of the most important water odorants; 2-isopropyl-3-methoxypyrazine, 2-isobutyl-3-methoxypyrazine, 2-methylisoborneol, 2,4,6-trichloroanisole and geosmin. The extraction method was absolutely solvent-free. Analytes were purged from 20 ml of water sample containing sodium chloride at room temperature by a flow of He and trapped on a Tenax sorbent. The desorption step was performed with helium and temperature programming and desorbed analytes were directly transferred to a gas chromatograph coupled to a mass spectrometer for separation and determination. The method was reproducible (RSD<8%) and linear over the calibration range (10-200 ngl(-1)). The relative recoveries of the analytes from ground water sample were calculated and were between 80 and 103% and limits of detection (LOD) below odor thresholds were achieved for most of the compounds.

  10. Structural studies on archaeal phytanyl-ether lipids isolated from membranes of extreme halophiles by linear ion-trap multiple-stage tandem mass spectrometry with electrospray ionization.

    PubMed

    Hsu, Fong-Fu; Lobasso, Simona; Turk, John; Corcelli, Angela

    2013-04-10

    The structures of archaeal glycerophospholipids and glycolipids are unique in that they consist of phytanyl substituents ether linked to the glycerol backbone, imparting stability to the molecules. In this contribution, we described multiple-stage linear ion-trap combined with high resolution mass spectrometry toward structural characterization of this lipid family desorbed as lithiated adduct ions or as the [M-H](-) and [M-2H](2-) ions by ESI. MS(n) on various forms of the lithiated adduct ions yielded rich structurally informative ions leading to complete structure identification of this lipid family, including the location of the methyl branches of the phytanyl chain. By contrast, structural information deriving from MS(n) on the [M-H](-) and [M-2H](2-) ions is not complete. The fragmentation pathways in an ion-trap, including unusual internal loss of glycerol moiety and internal loss of hexose found for this lipid family were proposed. This mass spectrometric approach provides a simple tool to facilitate confident characterization of this unique lipid family. Copyright © 2013 Elsevier B.V. All rights reserved.

  11. Detection of stanozolol and its metabolites in equine urine by liquid chromatography-electrospray ionization ion trap mass spectrometry.

    PubMed

    McKinney, Andrew R; Suann, Craig J; Dunstan, Anthony J; Mulley, Stephen L; Ridley, Damon D; Stenhouse, Allen M

    2004-11-05

    The equine phase I and phase II metabolism of the synthetic anabolic steroid stanozolol was investigated following its administration by intramuscular injection to a thoroughbred gelding. The major phase I biotransformations were hydroxylation at C16 and one other site, while phase II metabolism in the form of sulfate and beta-glucuronide conjugation was extensive. An analytical procedure was developed for the detection of stanozolol and its metabolites in equine urine using solid phase extraction, acid solvolysis of phase II conjugates and analysis by positive ion electrospray ionization ion trap LC-MS.

  12. Characterization of gallotannins from Astronium species by flow injection analysis- electrospray ionization-ion trap-tandem mass spectrometry and matrix-assisted laser desorption/ionization time-of- flight mass spectrometry.

    PubMed

    da Silva, Viviane Cândida; Napolitano, Assunta; Eletto, Daniela; Rodrigues, Clenilson Martins; Pizza, Cosimo; Vilegas, Wagner

    2011-01-01

    The species Astronium urundeuva (Allemao) Engl. and Astronium graveolens Jacq., which are used in Brazilian folk medicine to treat allergies, inflammation, diarrhea and ulcers, were investigated for their composition. The aim of this study was to define a rapid and reliable analytical approach, based on the flow-injection analysis-electrospray ionization-ion trap-tandem mass spectrometry (FIA-ESI-IT-MS-MS) and matrix-assisted laser desorption/ionization-time-of-flight mass spectrometry (MALDI-ToF-MS), to investigate the full range of hydrolyzable tannins present in the extracts of these Astronium species. The MALDI-ToF-MS analysis allowed us to ascertain the presence of hydrolysable tannins in both Astronium species as a series of gallotannins with degrees of polymerization of 7 to 13 galloyl units. Moreover, the analysis by FIA-ESI-IT-MS-MS, as well as confirming this result and chemically defining gallotannins as galloylglucose compounds, highlighted the presence of further classes of hydrolysable tannins, such as hexahydrodiphenoyl esters of glucose and some gallic acid derivatives, providing information about their structure by a careful study of their fragmentation patterns. Finally, the evaluation of the number of positional isomers of gallotannins occurring in both Astronium species was obtained by high-performance liquid chromatography-electrospray ionization-ion trap mass spectrometry (HPLC/ESI-IT-MS). This is the first mass spectrometric evidence relating to the existence of gallotannins in Astronium genus.

  13. A Novel Phase-Coherent Programmable Clock for High-Precision Arbitrary Waveform Generation Applied to Digital Ion Trap Mass Spectrometry

    SciTech Connect

    Koizumi, Hideya; Jatko, William Bruce; Andrews Jr, William H; Whitten, William B; Reilly, Pete

    2010-01-01

    Digital ion trap (DIT) mass spectrometry requires the ability to precisely and accurately produce waveforms. The quality of the mass spectra produced in terms of resolution and mass accuracy depend on the resolution and precision of the applied waveforms. This publication reveals a novel method for the production of arbitrary waveforms in general and then applies the method to the production of DIT waveforms. Arbitrary waveforms can be created by varying the clock frequency input to a programmable read only memory that is then input to a digital-to-analog converter (DAC). The arbitrary waveform is composed of a defined number of points that are triggered to be written after programmed numbers of clock cycles to define the arbitrary waveform. The novelty introduced here is that the direct digital synthesis (DDS) generated clock frequency can be precisely changed as the arbitrary waveform is written because we have developed a method to rapidly switch the DDS frequency exactly at the end of the output clock cycle allowing exact timing of multiple transitions to produce precise and temporally complex waveforms. Changing the frequency only at the end of the output clock cycle is a phase coherent process that permits precise timing between each point in the arbitrary waveform. The waveform generation technique was demonstrated by creating a prototype that was used to operate a digital ion trap mass spectrometer. The jitter in the phase-coherent DDS TTL output that was used as the frequency variable clock was 20 ps. This jitter represents the realizable limit of precision for waveform generation. The rectangular waveforms used to operate the mass spectrometer were created with counters that increased the jitter to 100 ps. The mass resolution achieved was 5000 at m/z = 414. This resolution corresponds to a jitter of 275 ps assuming DC fluctuations and overshoots in the waveform are insignificant. Resolution should improve with increasing mass because the waveforms have

  14. Inclusive photoproduction of bottom quarks for low and medium pT in the general-mass variable-flavour-number scheme

    NASA Astrophysics Data System (ADS)

    Kramer, G.; Spiesberger, H.

    2016-02-01

    We present predictions for b-quark production in photoproduction and compare with experimental data from HERA. Our theoretical predictions are obtained at next-to-leading-order in the general-mass variable-flavor-number scheme, an approach which takes into account the finite mass of the b quarks. We use realistic evolved nonperturbative fragmentation functions obtained from fits to e+e- data. We find in general good agreement of data with both the GM-VFNS and the FFNS calculations, while the more precise ZEUS data seem to prefer the GM-VFNS predictions.

  15. Measurement of Trap Length for an Optical Trap

    NASA Technical Reports Server (NTRS)

    Wrbanek, Susan Y.

    2009-01-01

    The trap length along the beam axis for an optical trap formed with an upright, oil-immersion microscope was measured. The goals for this effort were twofold. It was deemed useful to understand the depth to which an optical trap can reach for purposes of developing a tool to assist in the fabrication of miniature devices. Additionally, it was desired to know whether the measured trap length favored one or the other of two competing theories to model an optical trap. The approach was to trap a microsphere of known size and mass and raise it from its initial trap position. The microsphere was then dropped by blocking the laser beam for a pre-determined amount of time. Dropping the microsphere in a free-fall mode from various heights relative to the coverslip provides an estimate of how the trapping length changes with depth in water in a sample chamber on a microscope slide. While it was not possible to measure the trap length with sufficient precision to support any particular theory of optical trap formation, it was possible to find regions where the presence of physical boundaries influenced optical traps, and determine that the trap length, for the apparatus studied, is between 6 and 7 m. These results allow more precise control using optical micromanipulation to assemble miniature devices by providing information about the distance over which an optical trap is effective.

  16. Performance characteristics of an automated gas chromatograph-ion trap mass spectrometer system used for the 1995 Southern Oxidants Study field investigation in Nashville, Tennessee

    NASA Astrophysics Data System (ADS)

    Daughtrey, E. Hunter; Adams, Jeffrey R.; Oliver, Karen D.; Kronmiller, Keith G.; McClenny, William A.

    1998-09-01

    A trailer-deployed automated gas chromatograph-mass spectrometer (autoGC-MS) system capable of making continuous hourly measurements was used to determine volatile organic compounds (VOCs) in ambient air at New Hendersonville, Tennessee, and Research Triangle Park, North Carolina, in 1995. The system configuration, including the autoGC-MS, trailer and transfer line, siting, and sampling plan and schedule, is described. The autoGC-MS system employs a pair of matched sorbent traps to allow simultaneous sampling and desorption. Desorption is followed by Stirling engine cryofocusing and subsequent GC separation and mass spectral identification and quantification. Quality control measurements described include evaluating precision and accuracy of replicate analyses of independently supplied audit and round-robin canisters and determining the completeness of the data sets taken in Tennessee. Data quality objectives for precision (±10%) and accuracy (±20%) of 10- to 20-ppbv audit canisters and a completeness of >75% data capture were met. Quality assurance measures used in reviewing the data set include retention time stability, calibration checks, frequency distribution checks, and checks of the mass spectra. Special procedures and tests were used to minimize sorbent trap artifacts, to verify the quality of a standard prepared in our laboratory, and to prove the integrity of the insulated, heated transfer line. A rigorous determination of total system blank concentration levels using humidified scientific air spiked with ozone allowed estimation of method detection limits, ranging from 0.01 to 1.0 ppb C, for most of the 100 target compounds, which were a composite list of the target compounds for the Photochemical Assessment Monitoring Station network, those for Environmental Protection Agency method TO-14, and selected oxygenated VOCs.

  17. Optimized precursor ion selection for labile ions in a linear ion trap mass spectrometer and its impact on quantification using selected reaction monitoring.

    PubMed

    Lee, Hyun-Seok; Shin, Kyong-Oh; Jo, Sung-Chan; Lee, Yong-Moon; Yim, Yong-Hyeon

    2014-12-01

    The fragmentation of fragile ions during the application of an isolation waveform for precursor ion selection and the resulting loss of isolated ion intensity is well-known in ion trap mass spectrometry (ITMS). To obtain adequate ion intensity in the selected reaction monitoring (SRM) of fragile precursor ions, a wider ion isolation width is required. However, the increased isolation width significantly diminishes the selectivity of the channels chosen for SRM, which is a serious problem for samples with complex matrices. The sensitive and selective quantification of many lipid molecules, including ceramides from real biological samples, using a linear ion trap mass spectrometer is also hindered by the same problem because of the ease of water loss from protonated ceramide ions. In this study, a method for the reliable quantification of ceramides using SRM with near unity precursor ion isolation has been developed for ITMS by utilizing alternative precursor ions generated by in-source dissociation. The selected precursor ions allow the isolation of ions with unit mass width and the selective analysis of ceramides using SRM with negligible loss of sensitivity. The quantification of C18:0-, C24:0- and C24:1-ceramides using the present method shows excellent linearity over the concentration ranges from 6 to 100, 25 to 1000 and 25 to 1000 nM, respectively. The limits of detection of C18:0-, C24:0- and C24:1-ceramides were 0.25, 0.25 and 5 fmol, respectively. The developed method was successfully applied to quantify ceramides in fetal bovine serum.

  18. Multiresidue Screening of Veterinary Drugs in Meat, Milk, Egg, and Fish Using Liquid Chromatography Coupled with Ion Trap Time-of-Flight Mass Spectrometry.

    PubMed

    Kang, JeongWoo; Park, Su-Jeong; Park, Hae-Chul; Hossain, Md Akil; Kim, Myeong-Ae; Son, Seong-Wan; Lim, Chae-Mi; Kim, Tae-Wan; Cho, Byung-Hoon

    2017-06-01

    New approaches to veterinary drug screening based on liquid chromatography-mass spectrometry (LC-MS/MS) and time-of-flight mass spectrometry (ToF/MS) are rapid and have high selectivity and sensitivity. In this study, we developed a multiresidue method for screening over 100 veterinary drug residues using ion trap (IT)-ToF/MS. The screened compounds comprised major drug classes used in veterinary practice, representing the following: amphenicols, anthelmintics, benzimidazoles, β-lactams, coccidiostats, ionophores, macrolides, non-steroidal anti-inflammatory drugs, quinolones, sulfonamides, tetracyclines, and tranquilizers. The method was developed based on chromatographic retention time, specific accurate mass, isotope distribution, and fragment data. Each compound was validated at three levels, and the mass accuracy, accuracy, and repeatability were calculated. All parameters showed acceptable values and conformed to the Commission Decision 2002/657/EC criteria. This screening method can simultaneously analyze over 100 veterinary drugs in meat, milk, eggs, and fish in a single analytical run.

  19. [Screening and confirmation of 24 hormones in cosmetics by ultra high performance liquid chromatography-linear ion trap/orbitrap high resolution mass spectrometry].

    PubMed

    Li, Zhaoyong; Wang, Fengmei; Niu, Zengyuan; Luo, Xin; Zhang, Gang; Chen, Junhui

    2014-05-01

    A method of ultra high performance liquid chromatography-linear ion trap/orbitrap high resolution mass spectrometry (UPLC-LTQ/Orbitrap MS) was established to screen and confirm 24 hormones in cosmetics. Various cosmetic samples were extracted with methanol. The extract was loaded onto a Waters ACQUITY UPLC BEH C18 column (50 mm x 2.1 mm, 1.7 microm) using a gradient elution of acetonitrile/water containing 0.1% (v/v) formic acid for the separation. The accurate mass of quasi-molecular ion was acquired by full scanning of electrostatic field orbitrap. The rapid screening was carried out by the accurate mass of quasi-molecular ion. The confirmation analysis for targeted compounds was performed with the retention time and qualitative fragments obtained by data dependent scan mode. Under the optimal conditions, the 24 hormones were routinely detected with mass accuracy error below 3 x 10(-6) (3 ppm), and good linearities were obtained in their respective linear ranges with correlation coefficients higher than 0.99. The LODs (S/N = 3) of the 24 compounds were < or = 10 microg/kg, which can meet the requirements for the actual screening of cosmetic samples. The developed method was applied to screen the hormones in 50 cosmetic samples. The results demonstrate that the method is a useful tool for the rapid screening and identification of the hormones in cosmetics.

  20. Control of strobilurin fungicides in wheat using direct analysis in real time accurate time-of-flight and desorption electrospray ionization linear ion trap mass spectrometry.

    PubMed

    Schurek, Jakub; Vaclavik, Lukas; Hooijerink, H Dick; Lacina, Ondrej; Poustka, Jan; Sharman, Matthew; Caldow, Marianne; Nielen, Michel W F; Hajslova, Jana

    2008-12-15

    Ambient mass spectrometry has been used for the analysis of strobilurin residues in wheat. The use of this novel, challenging technique, employing a direct analysis in a real time (DART) ion-source coupled with a time-of-flight mass spectrometer (TOF MS) and a desorption electrospray ionization (DESI) source coupled with a linear ion trap tandem MS (LIT MS(n)), permitted a direct screen of the occurrence of target fungicides in treated grains in less than 1 min. For quantification purpose by DART-TOF MS, an ethyl acetate extract had to be prepared. With the use of a prochloraz as an internal standard, the performance characteristics obtained by repeated analyses of extract, spiked at 50 microg kg(-1) with six strobilurins (azoxystrobin, picoxystrobin, dimoxystrobin, kresoxim-methyl, pyraclostrobin, and trifloxystrobin), were in the following range: recoveries 78-92%, repeatability (RSD) 8-15%, linearity (R(2)) 0.9900-0.9978. The analysis of wheat with incurred strobilurin residues demonstrated good trueness of data generated by the DART-TOF MS method; the results were in a good agreement with those obtained by the conventional approach, i.e., by the QuEChERS sample handling procedure followed by identification/quantification employing high-performance liquid chromatography coupled with tandem mass spectrometry (LC-MS/MS). Tandem mass spectrometry using DESI-LIT MS(n) provided a sufficient number of product ions for confirmation of the identity of azoxystrobin and pyraclostrobin in incurred wheat samples.

  1. Characterization of fortimicin aminoglycoside profiles produced from Micromonospora olivasterospora DSM 43868 by high-performance liquid chromatography-electrospray ionization-ion trap-mass spectrometry.

    PubMed

    Huong, Nguyen Lan; Hoang, Nguyen Huu; Hong, Sung-Yong; Sohng, Jae Kyung; Yoon, Yeo Joon; Park, Je Won

    2016-02-01

    In this study, an efficient high-performance liquid chromatography (HPLC)-electrospray ionization (ESI)-ion trap-tandem mass spectrometry (MS/MS) was developed for the identification of the biosynthetic congeners involved in the aminocyclitol aminoglycosidic fortimicin pathway from Micromonospora olivasterospora fermentation. The usage of both acid extraction (pH ∼2.5) followed by an cationic-exchanging SPE cleanup and pentafluoropropionic acid mediated ion-pairing chromatography with ESI-ion trap-MS/MS detection was determined to be sufficiently practical to profile the fortimicin (FOR) congeners produced in a culture broth. The limit of the quantification for the fortimicin A (FOR-A) standard spiked in the culture broth was ∼1.6 ng mL(-1). The average recovery rate was 93.6%, and the intra- and inter-day precisions were <5% with accuracy in the range from 87.1 to 94.2%. Moreover, the epimeric mixtures including FOR-KH, FOR-KR, and FOR-B were separately resolved through a macrocyclic glycopeptide (teicoplanin)-bonded chiral column. As a result, ten natural FOR pseudodisaccharide analogs were identified and semi-quantified in descending order as follows: FOR-A, FOR-B, DCM, FOR-KH plus FOR-KR, FOR-KK1, FOR-AP, FOR-KL1, FOR-AO, and FOR-FU-10. This is the first report on both the simultaneous characterization of diverse structurally closely related FORs derived from bacterial fermentation using HPLC-ESI-ion trap-MS/MS analysis and the chromatographic separation of the three FOR epimers.

  2. Rapid detection and characterization of reactive drug metabolites in vitro using several isotope-labeled trapping agents and ultra-performance liquid chromatography/time-of-flight mass spectrometry.

    PubMed

    Rousu, Timo; Pelkonen, Olavi; Tolonen, Ari

    2009-03-01

    Reactive metabolites are believed to be one of the main reasons for unexpected drug-induced toxicity issues, by forming covalent adducts with cell proteins or DNA. Due to their high reactivity and short lifespan they are not directly detected by traditional analytical methods, but are most traditionally analyzed by liquid chromatography/tandem mass spectrometry (LC/MS/MS) after chemical trapping with nucleophilic agents such as glutathione. Here, a simple but very efficient assay was built up for screening reactive drug metabolites, utilizing stable isotope labeled glutathione, potassium cyanide and semicarbazide as trapping agents and highly sensitive ultra-performance liquid chromatography/time-of-flight mass spectrometry (UPLC/TOFMS) as an analytical tool. A group of twelve structurally different compounds was used as a test set, and a large number of trapped metabolites were detected for most of them, including many conjugates not reported previously. Glutathione-trapped metabolites were detected for nine of the twelve test compounds, whereas cyanide-trapped metabolites were found for eight and semicarbazide-trapped for three test compounds. The high mass accuracy of TOFMS provided unambiguous identification of change in molecular formula by formation of a reactive metabolite. In addition, use of a mass defect filter was found to be a usable tool when mining the trapped conjugates from the acquired data. The approach was shown to provide superior detection sensitivity in comparison to traditional methods based on neutral loss or precursor ion scanning with a triple quadrupole mass spectrometer, and clearly more efficient detection and characterization of reactive drug metabolites with a simpler test setup. Copyright (c) 2009 John Wiley & Sons, Ltd.

  3. Quantification of urinary o,o'-dityrosine, a biomarker for oxidative damage to proteins, by high performance liquid chromatography with triple quadrupole tandem mass spectrometry. A comparison with ion-trap tandem mass spectrometry.

    PubMed

    Orhan, Hilmi; Coolen, Stefan; Meerman, John H N

    2005-11-15

    We recently described an isotope dilution reversed-phase liquid chromatography-atmospheric pressure chemical ionization-ion-trap-tandem mass spectrometry (HPLC-APCI-MS/MS) method for the quantitative determination of oxidized amino acids in human urine, including o,o'-dityrosine, a specific marker of protein oxidation. In the present study, we investigated the possibility to use a triple quadrupole instrument for the analysis of this biomarker in urine. The two instruments were compared in terms of sensitivity, specificity and reproducibility. Results showed that the triple quadrupole instrument reaches 2.5-fold higher sensitivity (LOD=0.01 microM) compared to the previously used ion-trap instrument. Precision of the present assay is as follows: in-day variation is 4.6% and inter-day variation is 17%. The currently developed method was applied to a group of smoker urine samples. The mean urinary o,o'-dityrosine concentration was 0.08+/-0.01 microM. Expressed per urinary creatinine concentration, this corresponds to 10.1+/-0.4 micromol/mol creatinine. This is comparable to the previously reported values of 5.8+/-0.3 micromol/mol creatinine in non-smokers night-time urines, and 12.3+/-5 micromol/mol creatinine in day-time urines measured by the ion-trap instrument.

  4. Simultaneous determination of eight common odors in natural water body using automatic purge and trap coupled to gas chromatography with mass spectrometry.

    PubMed

    Deng, Xuwei; Liang, Gaodao; Chen, Jun; Qi, Min; Xie, Ping

    2011-06-17

    Production and fate of taste and odor (T&O) compounds in natural waters are a pressing environmental issue. Simultaneous determination of these complex compounds (covering a wide range of boiling points) has been difficult. A simple and sensitive method for the determination of eight malodors products of cyanobacterial blooms was developed using automatic purge and trap (P&T) coupled with gas chromatography-mass spectrometry (GC-MS). This extraction and concentration technique is solvent-free. Dimethylsulfide (DMS), dimethyltrisulfide (DMTS), 2-isopropyl-3-methoxypyrazine (IPMP), 2-isobutyl-3-methoxypyrazine (IBMP), 2-methylisoborneol (MIB), β-cyclocitral, geosmin (GSM) and β-ionone were separated within 15.3 min. P&T uses trap #07 and high-purity nitrogen purge gas. The calibration curves of the eight odors show good linearity in the range of 1-500 ng/L with a correlation coefficient above 0.999 (levels=8) and with residuals ranging from approximately 83% to 124%. The limits of detection (LOD) (S/N=3) are all below 1.5 ng/L that of GSM is even lower at 0.08 ng/L. The relative standard deviations (RSD) are between 3.38% and 8.59% (n=5) and recoveries of the analytes from water samples of a eutrophic lake are between 80.54% and 114.91%. This method could be widely employed for monitoring these eight odors in natural waters.

  5. A selective and sensitive method for quantitation of lysergic acid diethylamide (LSD) in whole blood by gas chromatography-ion trap tandem mass spectrometry.

    PubMed

    Libong, Danielle; Bouchonnet, Stéphane; Ricordel, Ivan

    2003-01-01

    A gas chromatography-ion trap tandem mass spectrometry (GC-ion trap MS-MS) method for detection and quantitation of LSD in whole blood is presented. The sample preparation process, including a solid-phase extraction step with Bond Elut cartridges, was performed with 2 mL of whole blood. Eight microliters of the purified extract was injected with a cold on-column injection method. Positive chemical ionization was performed using acetonitrile as reagent gas; LSD was detected in the MS-MS mode. The chromatograms obtained from blood extracts showed the great selectivity of the method. GC-MS quantitation was performed using lysergic acid methylpropylamide as the internal standard. The response of the MS was linear for concentrations ranging from 0.02 ng/mL (detection threshold) to 10.0 ng/mL. Several parameters such as the choice of the capillary column, the choice of the internal standard and that of the ionization mode (positive CI vs. EI) were rationalized. Decomposition pathways under both ionization modes were studied. Within-day and between-day stability were evaluated.

  6. Rapid quantification of four major bioactive alkaloids in Corydalis decumbens (Thunb.) Pers. by pressurised liquid extraction combined with liquid chromatography-triple quadrupole linear ion trap mass spectrometry.

    PubMed

    Shen, Yan; Han, Chao; Jiang, Yongxiang; Zhou, Xiujin; Zhu, Zhenou; Lei, Xinxiang

    2011-05-30

    A new method based on pressurised liquid extraction (PLE) followed by liquid chromatography-triple quadrupole linear ion trap mass spectrometry (LC-QTrap-MS) analysis has been developed for the identification and quantification of four major alkaloids in extracts of Corydalis decumbens (Thunb.) Pers. PLE extractions were performed using 90% ethanol; temperature was set at 100°C and pressure at 1500 psi. HPLC analysis was performed on a Waters XBridge™ C(18) column (150 mm × 2.1mm i.d., 3.5 μm) eluted by a mobile phase of acetonitrile and 0.2% acetic acid. Data acquisition was carried out in multiple reaction monitoring transitions (MRMs) mode, monitoring two MRM transitions to ensure an accurate identification of target compounds in the samples. Additional identification and confirmation of target compounds were performed using the enhanced product ion modus (EPI) of the linear ion trap. The novel LC-QTrap-MS platform offers the best sensitivity and specificity for characterization and quantitative determination of the four alkaloids in C. decumbens (Thunb.) Pers. and fulfils the quality criteria for routine laboratory application.

  7. An integrated approach for profiling oxidative metabolites and glutathione adducts using liquid chromatography coupled with ultraviolet detection and triple quadrupole-linear ion trap mass spectrometry.

    PubMed

    Chen, Guiying; Cheng, Zhongzhe; Zhang, Kerong; Jiang, Hongliang; Zhu, Mingshe

    2016-09-10

    The use of liquid chromatography (LC) coupled with triple quadrupole linear ion trap (Qtrap) mass spectrometry (MS) for both quantitative and qualitative analysis in drug metabolism and pharmacokinetic studies is of great interest. Here, a new Qtrap-based analytical methodology for simultaneous detection, structural characterization and semi-quantitation of in vitro oxidative metabolites and glutathione trapped reactive metabolites was reported. In the current study, combined multiple ion monitoring and multiple reaction monitoring were served as surveying scans to trigger product ion spectral acquisition of oxidative metabolites and glutathione adduct, respectively. Then, detection of metabolites and recovery of their MS/MS spectra were accomplished using multiple data mining approaches. Additionally, on-line ultraviolet (UV) detection was employed to determine relative concentrations of major metabolites. Analyses of metabolites of clozapine and nomifensine in rat liver microsomes not only revealed multiple oxidative metabolites and glutathione adducts, but also identified their major oxidative metabolism and bioactivation pathways. The results demonstrated that the LC/UV/MS method enabled Qtrap to perform the comprehensive profiling of oxidative metabolites and glutathione adducts in vitro.

  8. Use of a Hand-Portable Gas Chromatograph-Toroidal Ion Trap Mass Spectrometer for Self-Chemical Ionization Identification of Degradation Products Related to O-ethyl S-(2-diisopropylaminoethyl) Methyl Phosphonothiolate (VX)

    DTIC Science & Technology

    2011-01-01

    M+H]+ in a triple quadrupole instrument [19], and methanol CI using an ion trap instrument [6] led to observation of a m/z 128 product ion. 4...products produce poorly diagnostic electron ionization (EI) mass spectra by transmission quadrupole mass spectrometry. Thus, chemical ionization (CI) is...is used with a quadrupole mass filter detector [1]. When EI is used in this man- ner, unimolecular decomposition is the norm, producing neutral and

  9. Standing on the shoulders of giants. Trojan Earths and vortex trapping in low mass self-gravitating protoplanetary disks of gas and solids

    NASA Astrophysics Data System (ADS)

    Lyra, W.; Johansen, A.; Klahr, H.; Piskunov, N.

    2009-01-01

    Context: Centimeter and meter-sized solid particles in protoplanetary disks are trapped within long-lived, high-pressure regions, creating opportunities for collapse into planetesimals and planetary embryos. Aims: We aim to study the effect of the high-pressure regions generated in the gaseous disks by a giant planet perturber. These regions consist of gas retained in tadpole orbits around the stable Lagrangian points as a gap is carved, and the Rossby vortices launched at the edges of the gap. Methods: We performed global simulations of the dynamics of gas and solids in a low mass non-magnetized self-gravitating thin protoplanetary disk. We employed the Pencil code to solve the Eulerian hydro equations, tracing the solids with a large number of Lagrangian particles, usually 100 000. To compute the gravitational potential of the swarm of solids, we solved the Poisson equation using particle-mesh methods with multiple fast Fourier transforms. Results: Huge particle concentrations are seen in the Lagrangian points of the giant planet, as well as in the vortices they induce at the edges of the carved gaps. For 1 cm to 10 cm radii, gravitational collapse occurs in the Lagrangian points in less than 200 orbits. For 5 cm particles, a 2M⊕ planet is formed. For 10 cm, the final maximum collapsed mass is around 3M⊕. The collapse of the 1 cm particles is indirect, following the timescale of gas depletion from the tadpole orbits. Vortices are excited at the edges of the gap, primarily trapping particles of 30 cm radii. The rocky planet that is formed is as massive as 17M⊕, constituting a Super-Earth. Collapse does not occur for 40 cm onwards. By using multiple particle species, we find that gas drag modifies the streamlines in the tadpole region around the classical L4 and L5 points. As a result, particles of different radii have their stable points shifted to different locations. Collapse therefore takes longer and produces planets of lower mass. Three super-Earths are

  10. Computer-assisted diagnosis of mammographic masses using an information-theoretic image retrieval scheme with BIRADs-based relevance feedback

    NASA Astrophysics Data System (ADS)

    Tourassi, Georgia D.; Floyd, Carey E., Jr.

    2004-05-01

    The purpose of the study was to develop and evaluate a content-based image retrieval (CBIR) approach for computer-assisted diagnosis of masses detected in screening mammograms. The system follows an information theoretic retrieval scheme with a BIRADS-based relevance feedback (RF) algorithm. Initially, a knowledge databank of 365 mammographic regions of interest (ROIs) was created. They were all 512x512 pixel ROIs extracted from DDSM mammograms digitized using the Lumisys digitizer. The ROIs were extracted around the known locations of the annotated masses. Specifically, there were 177 ROIs depicting a biopsy-proven malignant mass and 188 ROIs with a benign mass. Subsequently, the CBIR algorithm was implemented using mutual information (MI) as the similarity metric for image retrieval. The CBIR algorithm formed the basis of a knowledge-based CAD system. Given a databank of mammographic masses with known pathology, a query mass was evaluated. Based on their information content, all similar masses in the databank were retrieved. A relevance feedback algorithm based on BIRADS findings was implemented to determine the relevance factor of the retrieved masses. Finally, a decision index was calculated using the query's k best matches. The decision index effectively combined the similarity metric of the retrieved cases and their relevance factor into a prediction regarding the malignancy status of the mass depicted in the query ROI. ROC analysis was to evaluate diagnostic performance. Performance improved dramatically with the incorporation of the relevance feedback algorithm. Overall, the CAD system achieved ROC area index AZ= 0.86+/-0.02 for the diagnosis of masses in screening mammograms.

  11. Gated charged-particle trap

    DOEpatents

    Benner, W. Henry

    1999-01-01

    The design and operation of a new type of charged-particle trap provides simultaneous measurements of mass, charge, and velocity of large electrospray ions. The trap consists of a detector tube mounted between two sets of center-bored trapping plates. Voltages applied to the trapping plates define symmetrically-opposing potential valleys which guide axially-injected ions to cycle back and forth through the charge-detection tube. A low noise charge-sensitive amplifier, connected to the tube, reproduces the image charge of individual ions as they pass through the detector tube. Ion mass is calculated from measurement of ion charge and velocity following each passage through the detector.

  12. Determination of 19 volatile organic compounds in wastewater effluents from different treatments by purge and trap followed by gas-chromatography coupled to mass spectrometry.

    PubMed

    Barco-Bonilla, Nieves; Plaza-Bolaños, Patricia; Fernández-Moreno, José Luis; Romero-González, Roberto; Frenich, Antonia